-- dump date 20140619_022049 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_178030.1 57236915 3230657 1..1323 1 NC_003912.7 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1323 dnaA 3230657 dnaA Campylobacter jejuni RM1221 chromosomal replication initiation protein YP_178030.1 1 D 195099 CDS YP_178031.1 57236916 3230658 1483..2550 1 NC_003912.7 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2550 dnaN 3230658 dnaN Campylobacter jejuni RM1221 DNA polymerase III subunit beta YP_178031.1 1483 D 195099 CDS YP_178032.1 57236917 3230659 2579..4888 1 NC_003912.7 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4888 gyrB 3230659 gyrB Campylobacter jejuni RM1221 DNA gyrase subunit B YP_178032.1 2579 D 195099 CDS YP_178033.1 57236918 3230660 complement(4914..5255) 1 NC_003912.7 identified by similarity to GB:AAN53794.1; hypothetical protein 5255 3230660 CJE0004 Campylobacter jejuni RM1221 hypothetical protein YP_178033.1 4914 R 195099 CDS YP_178034.1 57236919 3230661 complement(5258..6496) 1 NC_003912.7 identified by match to protein family HMM PF00174; match to protein family HMM PF03404; molybdopterin oxidoreductase 6496 3230661 CJE0005 Campylobacter jejuni RM1221 molybdopterin oxidoreductase YP_178034.1 5258 R 195099 CDS YP_178035.1 57236920 3230662 6707..8008 1 NC_003912.7 identified by similarity to GP:28204350; match to protein family HMM PF03553; Na+/H+ antiporter family protein 8008 3230662 CJE0006 Campylobacter jejuni RM1221 Na+/H+ antiporter family protein YP_178035.1 6707 D 195099 CDS YP_178036.1 57236921 3230663 8142..12632 1 NC_003912.7 identified by similarity to SP:P39812; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898; match to protein family HMM TIGR01612; glutamate synthase large subunit 12632 gltB 3230663 gltB Campylobacter jejuni RM1221 glutamate synthase large subunit YP_178036.1 8142 D 195099 CDS YP_178037.1 57236922 3230664 12642..14087 1 NC_003912.7 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 14087 gltD 3230664 gltD Campylobacter jejuni RM1221 glutamate synthase subunit beta YP_178037.1 12642 D 195099 CDS YP_178038.1 57236923 3230665 complement(14088..14663) 1 NC_003912.7 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 14663 rnhB 3230665 rnhB Campylobacter jejuni RM1221 ribonuclease HII YP_178038.1 14088 R 195099 CDS YP_178039.1 57236924 3230666 complement(14696..14935) 1 NC_003912.7 identified by similarity to GP:10505056; match to protein family HMM PF00633; match to protein family HMM TIGR00426; competence protein ComEA 14935 comEA 3230666 comEA Campylobacter jejuni RM1221 competence protein ComEA YP_178039.1 14696 R 195099 CDS YP_178040.1 57236925 3230667 complement(15000..15551) 1 NC_003912.7 identified by similarity to GP:22450191; match to protein family HMM PF00301; match to protein family HMM PF02915; rubrerythrin 15551 rbr 3230667 rbr Campylobacter jejuni RM1221 rubrerythrin YP_178040.1 15000 R 195099 CDS YP_178041.1 57236926 3230668 15807..17483 1 NC_003912.7 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 17483 ilvD 3230668 ilvD Campylobacter jejuni RM1221 dihydroxy-acid dehydratase YP_178041.1 15807 D 195099 CDS YP_178042.1 57236927 3230670 complement(17983..19209) 1 NC_003912.7 identified by similarity to OMNI:HP0711; hypothetical protein 19209 3230670 CJE0015 Campylobacter jejuni RM1221 hypothetical protein YP_178042.1 17983 R 195099 CDS YP_178043.1 57236928 3230671 19287..19961 1 NC_003912.7 identified by match to protein family HMM TIGR00364; ExsB 19961 3230671 CJE0016 Campylobacter jejuni RM1221 ExsB YP_178043.1 19287 D 195099 CDS YP_178044.1 57236929 3230672 complement(19982..21508) 1 NC_003912.7 identified by similarity to PIR:D71920; match to protein family HMM PF02600; DsbB family disulfide bond formation protein 21508 3230672 CJE0017 Campylobacter jejuni RM1221 DsbB family disulfide bond formation protein YP_178044.1 19982 R 195099 CDS YP_178045.1 57236930 3230673 complement(21520..21687) 1 NC_003912.7 hypothetical protein 21687 3230673 CJE0018 Campylobacter jejuni RM1221 hypothetical protein YP_178045.1 21520 R 195099 CDS YP_178046.1 57236931 3230674 complement(21793..23574) 1 NC_003912.7 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 23574 3230674 CJE0019 Campylobacter jejuni RM1221 methyl-accepting chemotaxis protein YP_178046.1 21793 R 195099 CDS YP_178047.1 57236932 3230675 complement(23564..24478) 1 NC_003912.7 identified by similarity to SP:P14532; match to protein family HMM PF03150; cytochrome C551 peroxidase 24478 ccpA-1 3230675 ccpA-1 Campylobacter jejuni RM1221 cytochrome C551 peroxidase YP_178047.1 23564 R 195099 CDS YP_178048.1 57236933 3230676 complement(24542..25420) 1 NC_003912.7 identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase 25420 3230676 CJE0021 Campylobacter jejuni RM1221 fumarylacetoacetate hydrolase YP_178048.1 24542 R 195099 CDS YP_178049.1 57236934 3230677 complement(25533..26435) 1 NC_003912.7 identified by match to protein family HMM PF00849; RNA pseudouridylate synthase 26435 3230677 CJE0022 Campylobacter jejuni RM1221 RNA pseudouridylate synthase YP_178049.1 25533 R 195099 CDS YP_178050.1 57236935 3230678 26513..27841 1 NC_003912.7 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 27841 purB-1 3230678 purB-1 Campylobacter jejuni RM1221 adenylosuccinate lyase YP_178050.1 26513 D 195099 CDS YP_178051.1 57236936 3230679 27857..30226 1 NC_003912.7 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 30226 nrdA 3230679 nrdA Campylobacter jejuni RM1221 ribonucleotide-diphosphate reductase subunit alpha YP_178051.1 27857 D 195099 CDS YP_178052.1 57236937 3230680 complement(30265..31650) 1 NC_003912.7 identified by match to protein family HMM PF00375; sodium/dicarboxylate symporter 31650 3230680 CJE0025 Campylobacter jejuni RM1221 sodium/dicarboxylate symporter YP_178052.1 30265 R 195099 CDS YP_178053.1 57236938 3230681 complement(31770..32393) 1 NC_003912.7 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 32393 thyX 3230681 thyX Campylobacter jejuni RM1221 FAD-dependent thymidylate synthase YP_178053.1 31770 R 195099 CDS YP_178054.1 57236939 3230682 32513..34144 1 NC_003912.7 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 34144 pyrG 3230682 pyrG Campylobacter jejuni RM1221 CTP synthetase YP_178054.1 32513 D 195099 CDS YP_178055.1 57236940 3230683 34131..35702 1 NC_003912.7 identified by similarity to OMNI:HP0348; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 35702 recJ 3230683 recJ Campylobacter jejuni RM1221 single-stranded-DNA-specific exonuclease RecJ YP_178055.1 34131 D 195099 CDS YP_178056.1 57236941 3230684 35798..36793 1 NC_003912.7 identified by similarity to GP:443453; match to protein family HMM PF00710; match to protein family HMM TIGR00520; L-asparaginase 36793 ansA 3230684 ansA Campylobacter jejuni RM1221 L-asparaginase YP_178056.1 35798 D 195099 CDS YP_178057.1 57237045 3230794 43241..44638 1 NC_003912.7 hypothetical protein 44638 3230794 CJE0030 Campylobacter jejuni RM1221 hypothetical protein YP_178057.1 43241 D 195099 CDS YP_178058.1 57237046 3230795 44699..48472 1 NC_003912.7 identified by similarity to PIR:D71810; type II restriction-modification enzyme 48472 3230795 CJE0031 Campylobacter jejuni RM1221 type II restriction-modification enzyme YP_178058.1 44699 D 195099 CDS YP_178059.1 57237047 3230796 48472..50928 1 NC_003912.7 hypothetical protein 50928 3230796 CJE0032 Campylobacter jejuni RM1221 hypothetical protein YP_178059.1 48472 D 195099 CDS YP_178060.1 57237048 3230797 complement(50958..51659) 1 NC_003912.7 identified by similarity to GP:28805357; match to protein family HMM PF04402; hypothetical protein 51659 3230797 CJE0033 Campylobacter jejuni RM1221 hypothetical protein YP_178060.1 50958 R 195099 CDS YP_178061.1 57237049 3230798 complement(51656..52858) 1 NC_003912.7 identified by match to protein family HMM PF00083; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter 52858 3230798 CJE0034 Campylobacter jejuni RM1221 Bcr/CflA subfamily drug resistance transporter YP_178061.1 51656 R 195099 CDS YP_178062.1 57237050 3230799 52961..54310 1 NC_003912.7 identified by similarity to OMNI:NTL01HP01063; hypothetical protein 54310 3230799 CJE0035 Campylobacter jejuni RM1221 hypothetical protein YP_178062.1 52961 D 195099 CDS YP_178063.1 57237051 3230800 complement(54334..55377) 1 NC_003912.7 identified by match to protein family HMM PF00034; cytochrome C family protein 55377 3230800 CJE0036 Campylobacter jejuni RM1221 cytochrome C family protein YP_178063.1 54334 R 195099 CDS YP_178064.1 57237052 3230801 complement(55555..56202) 1 NC_003912.7 hypothetical protein 56202 3230801 CJE0037 Campylobacter jejuni RM1221 hypothetical protein YP_178064.1 55555 R 195099 CDS YP_178065.1 57237053 3230802 complement(56202..58010) 1 NC_003912.7 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 58010 typA 3230802 typA Campylobacter jejuni RM1221 GTP-binding protein TypA YP_178065.1 56202 R 195099 CDS YP_178066.1 57237054 3230803 58145..58468 1 NC_003912.7 hypothetical protein 58468 3230803 CJE0039 Campylobacter jejuni RM1221 hypothetical protein YP_178066.1 58145 D 195099 CDS YP_178067.1 57237055 3230804 58487..60277 1 NC_003912.7 hypothetical protein 60277 3230804 CJE0040 Campylobacter jejuni RM1221 hypothetical protein YP_178067.1 58487 D 195099 CDS YP_178068.1 57237056 3230805 60330..61214 1 NC_003912.7 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 61214 flgD 3230805 flgD Campylobacter jejuni RM1221 flagellar basal body rod modification protein YP_178068.1 60330 D 195099 CDS YP_178069.1 57237057 3230806 61218..62855 1 NC_003912.7 identified by similarity to SP:Q44767; match to protein family HMM PF00460; flagellar hook protein 62855 flgE-1 3230806 flgE-1 Campylobacter jejuni RM1221 flagellar hook protein YP_178069.1 61218 D 195099 CDS YP_178070.1 57237058 3230807 complement(62859..64730) 1 NC_003912.7 hypothetical protein 64730 3230807 CJE0043 Campylobacter jejuni RM1221 hypothetical protein YP_178070.1 62859 R 195099 CDS YP_178071.1 57237059 3230808 complement(64687..65451) 1 NC_003912.7 identified by similarity to GB:AAP76601.1; hypothetical protein 65451 3230808 CJE0044 Campylobacter jejuni RM1221 hypothetical protein YP_178071.1 64687 R 195099 CDS YP_178072.1 57237060 3230809 65697..65789 1 NC_003912.7 hypothetical protein 65789 3230809 CJE0045 Campylobacter jejuni RM1221 hypothetical protein YP_178072.1 65697 D 195099 CDS YP_178073.1 57237061 3230811 complement(67407..68423) 1 NC_003912.7 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 68423 mnmA 3230811 mnmA Campylobacter jejuni RM1221 tRNA-specific 2-thiouridylase MnmA YP_178073.1 67407 R 195099 CDS YP_178074.1 57237062 3230812 complement(68423..69028) 1 NC_003912.7 identified by match to protein family HMM PF03641; lysine decarboxylase 69028 3230812 CJE0049 Campylobacter jejuni RM1221 lysine decarboxylase YP_178074.1 68423 R 195099 CDS YP_178075.1 57237063 3230813 complement(69149..69307) 1 NC_003912.7 hypothetical protein 69307 3230813 CJE0050 Campylobacter jejuni RM1221 hypothetical protein YP_178075.1 69149 R 195099 CDS YP_178076.1 57237064 3230814 complement(69304..70296) 1 NC_003912.7 hypothetical protein 70296 3230814 CJE0051 Campylobacter jejuni RM1221 hypothetical protein YP_178076.1 69304 R 195099 CDS YP_178077.1 57237065 3230815 complement(70366..70638) 1 NC_003912.7 hypothetical protein 70638 3230815 CJE0052 Campylobacter jejuni RM1221 hypothetical protein YP_178077.1 70366 R 195099 CDS YP_178078.1 57237066 3230816 complement(70677..70880) 1 NC_003912.7 hypothetical protein 70880 3230816 CJE0053 Campylobacter jejuni RM1221 hypothetical protein YP_178078.1 70677 R 195099 CDS YP_178079.1 57237067 3230817 71013..71867 1 NC_003912.7 identified by similarity to GP:2909664; HmcD domain-containing protein 71867 3230817 CJE0054 Campylobacter jejuni RM1221 HmcD domain-containing protein YP_178079.1 71013 D 195099 CDS YP_178080.1 57237068 3230818 71852..72448 1 NC_003912.7 identified by similarity to GP:2909665; match to protein family HMM PF03412; peptidase 72448 3230818 CJE0055 Campylobacter jejuni RM1221 peptidase YP_178080.1 71852 D 195099 CDS YP_178081.1 57237069 3230819 complement(72497..73318) 1 NC_003912.7 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliY 73318 fliY 3230819 fliY Campylobacter jejuni RM1221 flagellar motor switch protein FliY YP_178081.1 72497 R 195099 CDS YP_178082.1 57237070 3230820 complement(73336..74415) 1 NC_003912.7 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 74415 fliM 3230820 fliM Campylobacter jejuni RM1221 flagellar motor switch protein FliM YP_178082.1 73336 R 195099 CDS YP_178083.1 57237071 3230821 complement(74415..75107) 1 NC_003912.7 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 75107 fliA 3230821 fliA Campylobacter jejuni RM1221 flagellar biosynthesis sigma factor YP_178083.1 74415 R 195099 CDS YP_178084.1 57237072 3230822 complement(75088..75444) 1 NC_003912.7 hypothetical protein 75444 3230822 CJE0059 Campylobacter jejuni RM1221 hypothetical protein YP_178084.1 75088 R 195099 CDS YP_178085.1 57237073 3230823 complement(75463..76329) 1 NC_003912.7 identified by similarity to GP:6952812; match to protein family HMM PF00991; ParaA family ATPase 76329 3230823 CJE0060 Campylobacter jejuni RM1221 ParaA family ATPase YP_178085.1 75463 R 195099 CDS YP_178086.1 57237074 3230824 complement(76322..77776) 1 NC_003912.7 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 77776 flhF 3230824 flhF Campylobacter jejuni RM1221 flagellar biosynthesis regulator FlhF YP_178086.1 76322 R 195099 CDS YP_178087.1 57237075 3230825 complement(77786..78259) 1 NC_003912.7 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 78259 folK 3230825 folK Campylobacter jejuni RM1221 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_178087.1 77786 R 195099 CDS YP_178088.1 57237076 3230826 complement(78262..78741) 1 NC_003912.7 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 78741 aroQ 3230826 aroQ Campylobacter jejuni RM1221 3-dehydroquinate dehydratase YP_178088.1 78262 R 195099 CDS YP_178089.1 57237077 3230827 78832..80061 1 NC_003912.7 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; chlorohydrolase 80061 3230827 CJE0064 Campylobacter jejuni RM1221 chlorohydrolase YP_178089.1 78832 D 195099 CDS YP_178090.1 57237078 3230828 80049..80945 1 NC_003912.7 identified by similarity to GP:1655731; match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type 80945 sppA 3230828 sppA Campylobacter jejuni RM1221 signal peptide peptidase SppA, 36K type YP_178090.1 80049 D 195099 CDS YP_178091.1 57237079 3230829 81097..82053 1 NC_003912.7 identified by similarity to OMNI:NTL01CE0721; hypothetical protein 82053 3230829 CJE0066 Campylobacter jejuni RM1221 hypothetical protein YP_178091.1 81097 D 195099 CDS YP_178092.1 57237080 3230830 complement(82050..82208) 1 NC_003912.7 hypothetical protein 82208 3230830 CJE0067 Campylobacter jejuni RM1221 hypothetical protein YP_178092.1 82050 R 195099 CDS YP_178093.1 57237081 3230832 complement(83090..83746) 1 NC_003912.7 identified by similarity to OMNI:HP0137; match to protein family HMM PF02589; hypothetical protein 83746 3230832 CJE0069 Campylobacter jejuni RM1221 hypothetical protein YP_178093.1 83090 R 195099 CDS YP_178094.1 57237082 3230833 complement(83739..85178) 1 NC_003912.7 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273; iron-sulfur cluster binding protein 85178 3230833 CJE0070 Campylobacter jejuni RM1221 iron-sulfur cluster binding protein YP_178094.1 83739 R 195099 CDS YP_178095.1 57237083 3230834 complement(85175..85915) 1 NC_003912.7 identified by match to protein family HMM PF02754; hypothetical protein 85915 3230834 CJE0071 Campylobacter jejuni RM1221 hypothetical protein YP_178095.1 85175 R 195099 CDS YP_178096.1 57237084 3230835 complement(86025..87722) 1 NC_003912.7 identified by similarity to SP:P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 87722 lctP 3230835 lctP Campylobacter jejuni RM1221 L-lactate permease YP_178096.1 86025 R 195099 CDS YP_178097.1 57237085 3230836 complement(87894..88463) 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ00072; match to protein family HMM PF03499; cytolethal distending toxin, subunit C 88463 cdtC 3230836 cdtC Campylobacter jejuni RM1221 cytolethal distending toxin, subunit C YP_178097.1 87894 R 195099 CDS YP_178098.1 57237086 3230837 complement(88474..89271) 1 NC_003912.7 identified by similarity to GP:416215; match to protein family HMM PF03372; cytolethal distending toxin, subunit B 89271 cdtB 3230837 cdtB Campylobacter jejuni RM1221 cytolethal distending toxin, subunit B YP_178098.1 88474 R 195099 CDS YP_178099.1 57237087 3230838 complement(89268..90074) 1 NC_003912.7 identified by similarity to SP:Q46100; match to protein family HMM PF03498; cytolethal distending toxin, subunit A 90074 cdtA 3230838 cdtA Campylobacter jejuni RM1221 cytolethal distending toxin, subunit A YP_178099.1 89268 R 195099 CDS YP_178100.1 57237088 3230839 90151..90420 1 NC_003912.7 identified by similarity to GP:29338518; hypothetical protein 90420 3230839 CJE0076 Campylobacter jejuni RM1221 hypothetical protein YP_178100.1 90151 D 195099 CDS YP_178101.1 57237089 3230840 90421..91983 1 NC_003912.7 identified by similarity to SP:P11026; match to protein family HMM PF01654; cytochrome d ubiquinol oxidase, subunit I 91983 cydA 3230840 cydA Campylobacter jejuni RM1221 cytochrome d ubiquinol oxidase, subunit I YP_178101.1 90421 D 195099 CDS YP_178102.1 57237090 3230841 91983..93107 1 NC_003912.7 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase, subunit II 93107 cydB 3230841 cydB Campylobacter jejuni RM1221 cytochrome d ubiquinol oxidase, subunit II YP_178102.1 91983 D 195099 CDS YP_178103.1 57237091 3230842 93117..93221 1 NC_003912.7 hypothetical protein 93221 3230842 CJE0079 Campylobacter jejuni RM1221 hypothetical protein YP_178103.1 93117 D 195099 CDS YP_178104.1 57237092 3230843 complement(93301..93996) 1 NC_003912.7 identified by similarity to OMNI:NTL01PH00693; match to protein family HMM PF01177; match to protein family HMM TIGR00035; aspartate racemase 93996 3230843 CJE0080 Campylobacter jejuni RM1221 aspartate racemase YP_178104.1 93301 R 195099 CDS YP_178105.1 57237093 3230844 complement(94116..94811) 1 NC_003912.7 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 94811 ung 3230844 ung Campylobacter jejuni RM1221 uracil-DNA glycosylase YP_178105.1 94116 R 195099 CDS YP_178106.1 57237094 3230845 95082..96488 1 NC_003912.7 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 96488 aspA 3230845 aspA Campylobacter jejuni RM1221 aspartate ammonia-lyase YP_178106.1 95082 D 195099 CDS YP_178107.1 57237095 3230846 96514..97842 1 NC_003912.7 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 97842 dcuA 3230846 dcuA Campylobacter jejuni RM1221 anaerobic C4-dicarboxylate transporter YP_178107.1 96514 D 195099 CDS YP_178108.1 57237096 3230847 97948..99309 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00016; match to protein family HMM PF04141; lipoprotein 99309 3230847 CJE0084 Campylobacter jejuni RM1221 lipoprotein YP_178108.1 97948 D 195099 CDS YP_178109.1 57237097 3230848 99319..99687 1 NC_003912.7 lipoprotein 99687 3230848 CJE0085 Campylobacter jejuni RM1221 lipoprotein YP_178109.1 99319 D 195099 CDS YP_178110.1 57237098 3230849 99711..100334 1 NC_003912.7 identified by similarity to OMNI:HP1457; lipoprotein 100334 3230849 CJE0086 Campylobacter jejuni RM1221 lipoprotein YP_178110.1 99711 D 195099 CDS YP_178111.1 57237099 3230850 100417..101754 1 NC_003912.7 hypothetical protein 101754 3230850 CJE0087 Campylobacter jejuni RM1221 hypothetical protein YP_178111.1 100417 D 195099 CDS YP_178112.1 57237100 3230851 101764..102966 1 NC_003912.7 hypothetical protein 102966 3230851 CJE0088 Campylobacter jejuni RM1221 hypothetical protein YP_178112.1 101764 D 195099 CDS YP_178113.1 57237101 3230852 103125..103433 1 NC_003912.7 identified by similarity to SP:P02422; similarity to EGAD:23167; match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 103433 rplU 3230852 rplU Campylobacter jejuni RM1221 50S ribosomal protein L21 YP_178113.1 103125 D 195099 CDS YP_178114.1 57237102 3230853 103444..103698 1 NC_003912.7 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 103698 rpmA 3230853 rpmA Campylobacter jejuni RM1221 50S ribosomal protein L27 YP_178114.1 103444 D 195099 CDS YP_178115.1 57237103 3230854 103805..104857 1 NC_003912.7 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 104857 obgE 3230854 obgE Campylobacter jejuni RM1221 GTPase ObgE YP_178115.1 103805 D 195099 CDS YP_178116.1 57237104 3230855 104962..105717 1 NC_003912.7 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 105717 proB 3230855 proB Campylobacter jejuni RM1221 gamma-glutamyl kinase YP_178116.1 104962 D 195099 CDS YP_178117.1 57237105 3230856 105791..106708 1 NC_003912.7 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 106708 fmt 3230856 fmt Campylobacter jejuni RM1221 methionyl-tRNA formyltransferase YP_178117.1 105791 D 195099 CDS YP_178118.1 57237106 3230857 106671..107324 1 NC_003912.7 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 107324 3230857 CJE0094 Campylobacter jejuni RM1221 biotin--protein ligase YP_178118.1 106671 D 195099 CDS YP_178119.1 57237107 3230858 107321..108106 1 NC_003912.7 identified by similarity to SP:P37522; match to protein family HMM PF00991; ParA family chromosome partitioning ATPase 108106 3230858 CJE0095 Campylobacter jejuni RM1221 ParA family chromosome partitioning ATPase YP_178119.1 107321 D 195099 CDS YP_178120.1 57237108 3230859 108112..108948 1 NC_003912.7 identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family chromosome partitioning protein 108948 3230859 CJE0096 Campylobacter jejuni RM1221 ParB family chromosome partitioning protein YP_178120.1 108112 D 195099 CDS YP_178121.1 57237109 3230860 109009..109434 1 NC_003912.7 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' 109434 3230860 CJE0097 Campylobacter jejuni RM1221 F0F1 ATP synthase subunit B' YP_178121.1 109009 D 195099 CDS YP_178122.1 57237110 3230861 109445..109957 1 NC_003912.7 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 109957 3230861 CJE0098 Campylobacter jejuni RM1221 F0F1 ATP synthase subunit B YP_178122.1 109445 D 195099 CDS YP_178123.1 57237111 3230862 109960..110481 1 NC_003912.7 Produces ATP from ADP in the presence of a proton gradient across the membrane. The delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 110481 atpH 3230862 atpH Campylobacter jejuni RM1221 F0F1 ATP synthase subunit delta YP_178123.1 109960 D 195099 CDS YP_178124.1 57237112 3230863 110495..112000 1 NC_003912.7 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 112000 atpA 3230863 atpA Campylobacter jejuni RM1221 F0F1 ATP synthase subunit alpha YP_178124.1 110495 D 195099 CDS YP_178125.1 57237113 3230864 112009..112893 1 NC_003912.7 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 112893 atpG 3230864 atpG Campylobacter jejuni RM1221 F0F1 ATP synthase subunit gamma YP_178125.1 112009 D 195099 CDS YP_178126.1 57237114 3230865 112919..114316 1 NC_003912.7 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 114316 atpD 3230865 atpD Campylobacter jejuni RM1221 F0F1 ATP synthase subunit beta YP_178126.1 112919 D 195099 CDS YP_178127.1 57237115 3230866 114320..114709 1 NC_003912.7 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 114709 atpC 3230866 atpC Campylobacter jejuni RM1221 F0F1 ATP synthase subunit epsilon YP_178127.1 114320 D 195099 CDS YP_178128.1 57237116 3230867 114709..115263 1 NC_003912.7 identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 115263 3230867 CJE0104 Campylobacter jejuni RM1221 MotA/TolQ/ExbB proton channel family protein YP_178128.1 114709 D 195099 CDS YP_178129.1 57237117 3230868 115272..115661 1 NC_003912.7 identified by similarity to SP:P18784; match to protein family HMM PF02472; TonB system transport protein ExbD 115661 3230868 CJE0105 Campylobacter jejuni RM1221 TonB system transport protein ExbD YP_178129.1 115272 D 195099 CDS YP_178130.1 57237118 3230869 115664..116443 1 NC_003912.7 TonB domain-containing protein 116443 3230869 CJE0106 Campylobacter jejuni RM1221 TonB domain-containing protein YP_178130.1 115664 D 195099 CDS YP_178131.1 57237119 3230870 116453..117661 1 NC_003912.7 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 117661 tolB 3230870 tolB Campylobacter jejuni RM1221 translocation protein TolB YP_178131.1 116453 D 195099 CDS YP_178132.1 57237120 3230871 117738..118235 1 NC_003912.7 identified by similarity to SP:P07176; match to protein family HMM PF00691; peptidoglycan-associated lipoprotein Omp18 118235 3230871 CJE0108 Campylobacter jejuni RM1221 peptidoglycan-associated lipoprotein Omp18 YP_178132.1 117738 D 195099 CDS YP_178133.1 57237121 3230872 118239..119186 1 NC_003912.7 identified by similarity to OMNI:HP1124; hypothetical protein 119186 3230872 CJE0109 Campylobacter jejuni RM1221 hypothetical protein YP_178133.1 118239 D 195099 CDS YP_178134.1 57237122 3230873 119201..119770 1 NC_003912.7 identified by similarity to SP:P30856; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 119770 slyD 3230873 slyD Campylobacter jejuni RM1221 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD YP_178134.1 119201 D 195099 CDS YP_178135.1 57237123 3230874 119770..120690 1 NC_003912.7 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-ACP transacylase 120690 fabD 3230874 fabD Campylobacter jejuni RM1221 malonyl CoA-ACP transacylase YP_178135.1 119770 D 195099 CDS YP_178136.1 57237124 3230875 120687..121376 1 NC_003912.7 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 121376 mtnA 3230875 mtnA Campylobacter jejuni RM1221 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_178136.1 120687 D 195099 CDS YP_178137.1 57237125 3230876 121373..122128 1 NC_003912.7 identified by match to protein family HMM PF01171; PP-loop family protein 122128 3230876 CJE0113 Campylobacter jejuni RM1221 PP-loop family protein YP_178137.1 121373 D 195099 CDS YP_178138.1 57237126 3230877 122133..122654 1 NC_003912.7 identified by similarity to GB:AAD11442.1; pyrazinamidase/nicotinamidase 122654 3230877 CJE0114 Campylobacter jejuni RM1221 pyrazinamidase/nicotinamidase YP_178138.1 122133 D 195099 CDS YP_178139.1 57237127 3230878 122654..123268 1 NC_003912.7 identified by similarity to OMNI:HP0951; recombination protein RecO 123268 3230878 CJE0115 Campylobacter jejuni RM1221 recombination protein RecO YP_178139.1 122654 D 195099 CDS YP_178140.1 57237128 3230879 123265..123672 1 NC_003912.7 identified by similarity to GP:28974225; match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease 123672 3230879 CJE0116 Campylobacter jejuni RM1221 metalloprotease YP_178140.1 123265 D 195099 CDS YP_178141.1 57237129 3230880 123796..124485 1 NC_003912.7 hypothetical protein 124485 3230880 CJE0117 Campylobacter jejuni RM1221 hypothetical protein YP_178141.1 123796 D 195099 CDS YP_178142.1 57237130 3230881 complement(124510..125436) 1 NC_003912.7 identified by similarity to SP:P25717; match to protein family HMM PF01207; tRNA-dihydrouridine synthase B 125436 dusB 3230881 dusB Campylobacter jejuni RM1221 tRNA-dihydrouridine synthase B YP_178142.1 124510 R 195099 CDS YP_178143.1 57237131 3230882 complement(125433..126419) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00875; hypothetical protein 126419 3230882 CJE0119 Campylobacter jejuni RM1221 hypothetical protein YP_178143.1 125433 R 195099 CDS YP_178144.1 57237132 3230883 complement(126409..126771) 1 NC_003912.7 identified by similarity to SP:P18274; match to protein family HMM PF01258; dnaK suppressor protein 126771 3230883 CJE0120 Campylobacter jejuni RM1221 dnaK suppressor protein YP_178144.1 126409 R 195099 CDS YP_178145.1 57237133 3230884 complement(126783..127244) 1 NC_003912.7 identified by similarity to GP:28202370; match to protein family HMM PF02590; hypothetical protein 127244 3230884 CJE0121 Campylobacter jejuni RM1221 hypothetical protein YP_178145.1 126783 R 195099 CDS YP_178146.1 57237134 3230885 complement(127234..128076) 1 NC_003912.7 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 128076 accD 3230885 accD Campylobacter jejuni RM1221 acetyl-CoA carboxylase subunit beta YP_178146.1 127234 R 195099 CDS YP_178147.1 57237135 3230886 complement(128085..128807) 1 NC_003912.7 identified by similarity to SP:P22783; match to protein family HMM PF00459; inositol monophosphatase 128807 3230886 CJE0123 Campylobacter jejuni RM1221 inositol monophosphatase YP_178147.1 128085 R 195099 CDS YP_178148.1 57237136 3230887 complement(128807..131026) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00596; match to protein family HMM PF01103; OMP85 family outer membrane protein 131026 3230887 CJE0124 Campylobacter jejuni RM1221 OMP85 family outer membrane protein YP_178148.1 128807 R 195099 CDS YP_178149.1 57237137 3230888 131103..131930 1 NC_003912.7 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 131930 tyrA 3230888 tyrA Campylobacter jejuni RM1221 prephenate dehydrogenase YP_178149.1 131103 D 195099 CDS YP_178150.1 57237138 3230889 132010..133383 1 NC_003912.7 identified by match to protein family HMM PF01551; M24/M37 family peptidase 133383 3230889 CJE0126 Campylobacter jejuni RM1221 M24/M37 family peptidase YP_178150.1 132010 D 195099 CDS YP_178151.1 57237139 3230890 133383..134267 1 NC_003912.7 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 134267 lpxC 3230890 lpxC Campylobacter jejuni RM1221 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_178151.1 133383 D 195099 CDS YP_178152.1 57237140 3230891 134306..134707 1 NC_003912.7 identified by similarity to GP:2314199; hypothetical protein 134707 3230891 CJE0128 Campylobacter jejuni RM1221 hypothetical protein YP_178152.1 134306 D 195099 CDS YP_178153.1 57237141 3230892 134716..135594 1 NC_003912.7 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 135594 thrB 3230892 thrB Campylobacter jejuni RM1221 homoserine kinase YP_178153.1 134716 D 195099 CDS YP_178154.1 57237142 3230893 135619..135876 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00373; match to protein family HMM PF04296; hypothetical protein 135876 3230893 CJE0130 Campylobacter jejuni RM1221 hypothetical protein YP_178154.1 135619 D 195099 CDS YP_178155.1 57237143 3230894 135863..138478 1 NC_003912.7 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 138478 infB 3230894 infB Campylobacter jejuni RM1221 translation initiation factor IF-2 YP_178155.1 135863 D 195099 CDS YP_178156.1 57237144 3230895 138475..138837 1 NC_003912.7 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 138837 rbfA 3230895 rbfA Campylobacter jejuni RM1221 ribosome-binding factor A YP_178156.1 138475 D 195099 CDS YP_178157.1 57237145 3230896 138827..139249 1 NC_003912.7 identified by similarity to SP:Q9ZM44; match to protein family HMM PF02576; hypothetical protein 139249 3230896 CJE0133 Campylobacter jejuni RM1221 hypothetical protein YP_178157.1 138827 D 195099 CDS YP_178158.1 57237146 3230897 139354..141342 1 NC_003912.7 identified by similarity to SP:P15005; McrBC restriction endonuclease system, McrB subunit 141342 3230897 CJE0134 Campylobacter jejuni RM1221 McrBC restriction endonuclease system, McrB subunit YP_178158.1 139354 D 195099 CDS YP_178159.1 57237147 3230898 141335..142666 1 NC_003912.7 hypothetical protein 142666 3230898 CJE0135 Campylobacter jejuni RM1221 hypothetical protein YP_178159.1 141335 D 195099 CDS YP_178160.1 57237148 3230899 complement(142655..143458) 1 NC_003912.7 identified by similarity to PIR:T46653; match to protein family HMM PF00950; cation ABC transporter permease 143458 3230899 CJE0136 Campylobacter jejuni RM1221 cation ABC transporter permease YP_178160.1 142655 R 195099 CDS YP_178161.1 57237149 3230900 complement(143451..144305) 1 NC_003912.7 identified by similarity to SP:Q9XDA6; match to protein family HMM PF00005; cation ABC transporter ATP-binding protein 144305 3230900 CJE0137 Campylobacter jejuni RM1221 cation ABC transporter ATP-binding protein YP_178161.1 143451 R 195099 CDS YP_178162.1 57237150 3230901 complement(144318..145208) 1 NC_003912.7 identified by match to protein family HMM PF01297; cation ABC transporter periplasmic cation-binding protein 145208 3230901 CJE0138 Campylobacter jejuni RM1221 cation ABC transporter periplasmic cation-binding protein YP_178162.1 144318 R 195099 CDS YP_178163.1 57237151 3230902 145477..145806 1 NC_003912.7 hypothetical protein 145806 3230902 CJE0139 Campylobacter jejuni RM1221 hypothetical protein YP_178163.1 145477 D 195099 CDS YP_178164.1 57237152 3230903 145824..147446 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01441; match to protein family HMM PF00015; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 147446 3230903 CJE0140 Campylobacter jejuni RM1221 methyl-accepting chemotaxis protein YP_178164.1 145824 D 195099 CDS YP_178165.1 57237153 3230904 147581..149362 1 NC_003912.7 identified by similarity to PIR:G82508; match to protein family HMM PF05787; match to protein family HMM TIGR01409; hypothetical protein 149362 3230904 CJE0141 Campylobacter jejuni RM1221 hypothetical protein YP_178165.1 147581 D 195099 CDS YP_178166.1 57237154 3230905 complement(149400..150338) 1 NC_003912.7 identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 150338 trxB 3230905 trxB Campylobacter jejuni RM1221 thioredoxin-disulfide reductase YP_178166.1 149400 R 195099 CDS YP_178167.1 57237155 3230906 complement(150472..150786) 1 NC_003912.7 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 150786 trx 3230906 trx Campylobacter jejuni RM1221 thioredoxin YP_178167.1 150472 R 195099 CDS YP_178168.1 57237156 3230907 complement(150843..151181) 1 NC_003912.7 identified by similarity to SP:O25499; match to protein family HMM PF02021; hypothetical protein 151181 3230907 CJE0144 Campylobacter jejuni RM1221 hypothetical protein YP_178168.1 150843 R 195099 CDS YP_178169.1 57237157 3230908 complement(151181..152428) 1 NC_003912.7 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 152428 hom 3230908 hom Campylobacter jejuni RM1221 homoserine dehydrogenase YP_178169.1 151181 R 195099 CDS YP_178170.1 57237158 3230909 complement(152432..153634) 1 NC_003912.7 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 153634 3230909 CJE0146 Campylobacter jejuni RM1221 aspartate aminotransferase YP_178170.1 152432 R 195099 CDS YP_178171.1 57237159 3230910 complement(153646..154452) 1 NC_003912.7 identified by similarity to OMNI:HP0555; hypothetical protein 154452 3230910 CJE0147 Campylobacter jejuni RM1221 hypothetical protein YP_178171.1 153646 R 195099 CDS YP_178172.1 57237160 3230911 complement(154446..155384) 1 NC_003912.7 identified by similarity to OMNI:HP0554; hypothetical protein 155384 3230911 CJE0148 Campylobacter jejuni RM1221 hypothetical protein YP_178172.1 154446 R 195099 CDS YP_178173.1 57237161 3230912 complement(155377..156060) 1 NC_003912.7 identified by match to protein family HMM PF00588; RNA methyltransferase 156060 3230912 CJE0149 Campylobacter jejuni RM1221 RNA methyltransferase YP_178173.1 155377 R 195099 CDS YP_178174.1 57237162 3230913 complement(156074..156898) 1 NC_003912.7 identified by similarity to SP:Q9ZLS8; match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase 156898 3230913 CJE0150 Campylobacter jejuni RM1221 tetrapyrrole methylase YP_178174.1 156074 R 195099 CDS YP_178175.1 57237163 3230914 complement(156901..157101) 1 NC_003912.7 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 157101 rpmE 3230914 rpmE Campylobacter jejuni RM1221 50S ribosomal protein L31 YP_178175.1 156901 R 195099 CDS YP_178176.1 57237164 3230915 complement(157180..157836) 1 NC_003912.7 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 157836 3230915 CJE0152 Campylobacter jejuni RM1221 16S ribosomal RNA methyltransferase RsmE YP_178176.1 157180 R 195099 CDS YP_178177.1 57237165 3230916 complement(157838..158245) 1 NC_003912.7 hypothetical protein 158245 3230916 CJE0153 Campylobacter jejuni RM1221 hypothetical protein YP_178177.1 157838 R 195099 CDS YP_178178.1 57237166 3230917 complement(158245..158670) 1 NC_003912.7 identified by match to protein family HMM PF00034; cytochrome C family protein 158670 3230917 CJE0154 Campylobacter jejuni RM1221 cytochrome C family protein YP_178178.1 158245 R 195099 CDS YP_178179.1 57237167 3230918 complement(158670..159251) 1 NC_003912.7 6-pyruvoyl tetrahydrobiopterin synthase-like protein 159251 3230918 CJE0155 Campylobacter jejuni RM1221 6-pyruvoyl tetrahydrobiopterin synthase-like protein YP_178179.1 158670 R 195099 CDS YP_178180.1 57237168 3230919 complement(159248..159991) 1 NC_003912.7 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 159991 3230919 CJE0156 Campylobacter jejuni RM1221 radical SAM domain-containing protein YP_178180.1 159248 R 195099 CDS YP_178181.1 57237169 3230920 complement(159994..160956) 1 NC_003912.7 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 160956 moaA 3230920 moaA Campylobacter jejuni RM1221 molybdenum cofactor biosynthesis protein A YP_178181.1 159994 R 195099 CDS YP_178182.1 57237170 3230921 complement(160969..161484) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP01266; hypothetical protein 161484 3230921 CJE0158 Campylobacter jejuni RM1221 hypothetical protein YP_178182.1 160969 R 195099 CDS YP_178183.1 57237171 3230922 complement(161481..161978) 1 NC_003912.7 identified by similarity to OMNI:HP1359; hypothetical protein 161978 3230922 CJE0159 Campylobacter jejuni RM1221 hypothetical protein YP_178183.1 161481 R 195099 CDS YP_178184.1 57237172 3230923 complement(161969..162853) 1 NC_003912.7 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 162853 ubiA 3230923 ubiA Campylobacter jejuni RM1221 prenyltransferase YP_178184.1 161969 R 195099 CDS YP_178185.1 57237173 3230924 162924..163793 1 NC_003912.7 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 163793 miaA 3230924 miaA Campylobacter jejuni RM1221 tRNA delta(2)-isopentenylpyrophosphate transferase YP_178185.1 162924 D 195099 CDS YP_178186.1 57237174 3230925 complement(163779..164342) 1 NC_003912.7 identified by similarity to OMNI:NTL03CP0535; match to protein family HMM PF02659; hypothetical protein 164342 3230925 CJE0162 Campylobacter jejuni RM1221 hypothetical protein YP_178186.1 163779 R 195099 CDS YP_178187.1 57237175 3230926 complement(164700..164882) 1 NC_003912.7 hypothetical protein 164882 3230926 CJE0163 Campylobacter jejuni RM1221 hypothetical protein YP_178187.1 164700 R 195099 CDS YP_178188.1 57237176 3230927 165146..165808 1 NC_003912.7 identified by similarity to SP:P09157; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe 165808 sodB 3230927 sodB Campylobacter jejuni RM1221 superoxide dismutase, Fe YP_178188.1 165146 D 195099 CDS YP_178189.1 57237177 3230928 complement(165836..167041) 1 NC_003912.7 identified by match to protein family HMM PF03435; saccharopine dehydrogenase 167041 3230928 CJE0165 Campylobacter jejuni RM1221 saccharopine dehydrogenase YP_178189.1 165836 R 195099 CDS YP_178190.1 57237178 3230929 complement(167083..167991) 1 NC_003912.7 identified by match to protein family HMM PF00005; iron ABC transporter ATP binding subunit 167991 3230929 CJE0166 Campylobacter jejuni RM1221 iron ABC transporter ATP binding subunit YP_178190.1 167083 R 195099 CDS YP_178191.1 57237179 3230930 complement(167975..169591) 1 NC_003912.7 identified by match to protein family HMM PF00528; iron ABC transporter permease 169591 3230930 CJE0167 Campylobacter jejuni RM1221 iron ABC transporter permease YP_178191.1 167975 R 195099 CDS YP_178192.1 57237180 3230931 complement(169591..170595) 1 NC_003912.7 identified by similarity to GP:2125893; match to protein family HMM PF01547; iron ABC transporter periplasmic iron-binding protein 170595 3230931 CJE0168 Campylobacter jejuni RM1221 iron ABC transporter periplasmic iron-binding protein YP_178192.1 169591 R 195099 CDS YP_178193.1 57237181 3230932 complement(170606..170815) 1 NC_003912.7 hypothetical protein 170815 3230932 CJE0169 Campylobacter jejuni RM1221 hypothetical protein YP_178193.1 170606 R 195099 CDS YP_178194.1 57237182 3230933 170945..171796 1 NC_003912.7 identified by similarity to GP:14571873; match to protein family HMM PF04187; TonB-dependent colicin lipoprotein 171796 3230933 CJE0170 Campylobacter jejuni RM1221 TonB-dependent colicin lipoprotein YP_178194.1 170945 D 195099 CDS YP_178195.1 57237183 3230934 171793..174060 1 NC_003912.7 identified by similarity to GP:14571875; match to protein family HMM PF00593; TonB-dependent colicin receptor protein 174060 3230934 CJE0171 Campylobacter jejuni RM1221 TonB-dependent colicin receptor protein YP_178195.1 171793 D 195099 CDS YP_178196.1 57237184 3230935 174072..174833 1 NC_003912.7 identified by similarity to SP:P18783; match to protein family HMM PF01618; TonB system transport protein ExbB 174833 exbB-1 3230935 exbB-1 Campylobacter jejuni RM1221 TonB system transport protein ExbB YP_178196.1 174072 D 195099 CDS YP_178197.1 57237185 3230936 174820..175230 1 NC_003912.7 identified by similarity to SP:P18784; match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 175230 3230936 CJE0173 Campylobacter jejuni RM1221 biopolymer ExbD/TolR family transporter YP_178197.1 174820 D 195099 CDS YP_178198.1 57237186 3230937 175232..175978 1 NC_003912.7 identified by similarity to GB:AAK67308.1; match to protein family HMM TIGR01352; TonB-dependent colicin receptor protein 175978 3230937 CJE0174 Campylobacter jejuni RM1221 TonB-dependent colicin receptor protein YP_178198.1 175232 D 195099 CDS YP_178199.1 57237187 3230938 176030..177229 1 NC_003912.7 in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transporter 177229 3230938 CJE0175 Campylobacter jejuni RM1221 transporter YP_178199.1 176030 D 195099 CDS YP_178200.1 57237188 3230939 177400..178686 1 NC_003912.7 identified by similarity to GP:29895731; match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; transporter 178686 3230939 CJE0176 Campylobacter jejuni RM1221 transporter YP_178200.1 177400 D 195099 CDS YP_178201.1 57237189 3230940 complement(178700..179884) 1 NC_003912.7 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase 179884 3230940 CJE0177 Campylobacter jejuni RM1221 Ser/Thr protein phosphatase YP_178201.1 178700 R 195099 CDS YP_178202.1 57237190 3230941 complement(179894..180103) 1 NC_003912.7 identified by match to protein family HMM PF03831; PhnA domain-containing protein 180103 3230941 CJE0178 Campylobacter jejuni RM1221 PhnA domain-containing protein YP_178202.1 179894 R 195099 CDS YP_178203.1 57237191 3230942 complement(180096..180815) 1 NC_003912.7 identified by similarity to SP:P43932; match to protein family HMM PF03741; TerC family integral membrane protein 180815 3230942 CJE0179 Campylobacter jejuni RM1221 TerC family integral membrane protein YP_178203.1 180096 R 195099 CDS YP_178204.1 57237192 3230943 complement(180887..181453) 1 NC_003912.7 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 181453 purN 3230943 purN Campylobacter jejuni RM1221 phosphoribosylglycinamide formyltransferase YP_178204.1 180887 R 195099 CDS YP_178205.1 57237193 3230944 complement(181444..182814) 1 NC_003912.7 identified by similarity to SP:Q9ZJM4; match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; hypothetical protein 182814 3230944 CJE0181 Campylobacter jejuni RM1221 hypothetical protein YP_178205.1 181444 R 195099 CDS YP_178206.1 57237194 3230945 complement(182798..183496) 1 NC_003912.7 identified by similarity to OMNI:CT0467; match to protein family HMM PF01936; hypothetical protein 183496 3230945 CJE0182 Campylobacter jejuni RM1221 hypothetical protein YP_178206.1 182798 R 195099 CDS YP_178207.1 57237195 3230946 complement(183498..185003) 1 NC_003912.7 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-related protein 185003 3230946 CJE0183 Campylobacter jejuni RM1221 Mg chelatase-related protein YP_178207.1 183498 R 195099 CDS YP_178208.1 57237196 3230947 complement(185000..185527) 1 NC_003912.7 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 185527 def 3230947 def Campylobacter jejuni RM1221 peptide deformylase YP_178208.1 185000 R 195099 CDS YP_178209.1 57237197 3230948 complement(185563..186147) 1 NC_003912.7 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 186147 clpP 3230948 clpP Campylobacter jejuni RM1221 ATP-dependent Clp protease proteolytic subunit YP_178209.1 185563 R 195099 CDS YP_178210.1 57237198 3230949 complement(186147..187481) 1 NC_003912.7 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 187481 tig 3230949 tig Campylobacter jejuni RM1221 trigger factor YP_178210.1 186147 R 195099 CDS YP_178211.1 57237199 3230950 187625..188197 1 NC_003912.7 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 188197 folE 3230950 folE Campylobacter jejuni RM1221 GTP cyclohydrolase I YP_178211.1 187625 D 195099 CDS YP_178212.1 57237200 3230951 188197..189582 1 NC_003912.7 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 189582 fliI 3230951 fliI Campylobacter jejuni RM1221 flagellum-specific ATP synthase YP_178212.1 188197 D 195099 CDS YP_178213.1 57237201 3230952 complement(189585..190922) 1 NC_003912.7 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 190922 purF 3230952 purF Campylobacter jejuni RM1221 amidophosphoribosyltransferase YP_178213.1 189585 R 195099 CDS YP_178214.1 57237202 3230953 complement(190924..191652) 1 NC_003912.7 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 191652 dapB 3230953 dapB Campylobacter jejuni RM1221 dihydrodipicolinate reductase YP_178214.1 190924 R 195099 CDS YP_178215.1 57237203 3230954 complement(191715..192896) 1 NC_003912.7 identified by match to protein family HMM PF00004; recombination factor protein RarA 192896 3230954 CJE0191 Campylobacter jejuni RM1221 recombination factor protein RarA YP_178215.1 191715 R 195099 CDS YP_178216.1 57237204 3230955 complement(192896..194023) 1 NC_003912.7 hypothetical protein 194023 3230955 CJE0192 Campylobacter jejuni RM1221 hypothetical protein YP_178216.1 192896 R 195099 CDS YP_178217.1 57237205 3230956 complement(194157..194504) 1 NC_003912.7 hypothetical protein 194504 3230956 CJE0193 Campylobacter jejuni RM1221 hypothetical protein YP_178217.1 194157 R 195099 CDS YP_178218.1 57237206 3230957 complement(194603..195208) 1 NC_003912.7 identified by similarity to OMNI:PG0424; hypothetical protein 195208 3230957 CJE0194 Campylobacter jejuni RM1221 hypothetical protein YP_178218.1 194603 R 195099 CDS YP_178219.1 57237207 3230958 complement(195177..195500) 1 NC_003912.7 hypothetical protein 195500 3230958 CJE0195 Campylobacter jejuni RM1221 hypothetical protein YP_178219.1 195177 R 195099 CDS YP_178220.1 57237208 3230960 197273..199267 1 NC_003912.7 identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733; OPT family oligopeptide transporter 199267 3230960 CJE0197 Campylobacter jejuni RM1221 OPT family oligopeptide transporter YP_178220.1 197273 D 195099 CDS YP_178221.1 57237209 3230961 199341..200144 1 NC_003912.7 identified by similarity to SP:P31054; match to protein family HMM PF02673; match to protein family HMM TIGR00753; undecaprenol kinase 200144 3230961 CJE0198 Campylobacter jejuni RM1221 undecaprenol kinase YP_178221.1 199341 D 195099 CDS YP_178222.1 57237210 3230962 200275..202083 1 NC_003912.7 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 202083 thrS 3230962 thrS Campylobacter jejuni RM1221 threonyl-tRNA synthetase YP_178222.1 200275 D 195099 CDS YP_178223.1 57237211 3230963 202080..202598 1 NC_003912.7 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 202598 infC 3230963 infC Campylobacter jejuni RM1221 translation initiation factor IF-3 YP_178223.1 202080 D 195099 CDS YP_178224.1 57237212 3230964 202637..203728 1 NC_003912.7 identified by similarity to SP:P24582; match to protein family HMM PF02086; D12 class N6 adenine-specific DNA methyltransferase 203728 3230964 CJE0201 Campylobacter jejuni RM1221 D12 class N6 adenine-specific DNA methyltransferase YP_178224.1 202637 D 195099 CDS YP_178225.1 57237213 3230965 203768..203869 1 NC_003912.7 hypothetical protein 203869 3230965 CJE0202 Campylobacter jejuni RM1221 hypothetical protein YP_178225.1 203768 D 195099 CDS YP_178226.1 57237214 3230966 203805..203918 1 NC_003912.7 hypothetical protein 203918 3230966 CJE0203 Campylobacter jejuni RM1221 hypothetical protein YP_178226.1 203805 D 195099 CDS YP_178227.1 57237215 3230967 203958..204083 1 NC_003912.7 hypothetical protein 204083 3230967 CJE0204 Campylobacter jejuni RM1221 hypothetical protein YP_178227.1 203958 D 195099 CDS YP_178228.1 57237216 3230968 204203..204649 1 NC_003912.7 hypothetical protein 204649 3230968 CJE0205 Campylobacter jejuni RM1221 hypothetical protein YP_178228.1 204203 D 195099 CDS YP_178229.1 57237217 3230969 204813..205043 1 NC_003912.7 hypothetical protein 205043 3230969 CJE0206 Campylobacter jejuni RM1221 hypothetical protein YP_178229.1 204813 D 195099 CDS YP_178230.1 57237218 3230970 205106..205345 1 NC_003912.7 hypothetical protein 205345 3230970 CJE0207 Campylobacter jejuni RM1221 hypothetical protein YP_178230.1 205106 D 195099 CDS YP_178231.1 57237219 3230971 205424..205606 1 NC_003912.7 identified by similarity to GB:CAA11507.1; hypothetical protein 205606 3230971 CJE0208 Campylobacter jejuni RM1221 hypothetical protein YP_178231.1 205424 D 195099 CDS YP_178232.1 57237220 3230972 complement(205700..205882) 1 NC_003912.7 hypothetical protein 205882 3230972 CJE0209 Campylobacter jejuni RM1221 hypothetical protein YP_178232.1 205700 R 195099 CDS YP_178233.1 57237221 3230973 205926..206042 1 NC_003912.7 hypothetical protein 206042 3230973 CJE0210 Campylobacter jejuni RM1221 hypothetical protein YP_178233.1 205926 D 195099 CDS YP_178234.1 57237222 3230974 206043..206246 1 NC_003912.7 identified by similarity to GP:886953; pathogenicity domain-containing protein 206246 3230974 CJE0211 Campylobacter jejuni RM1221 pathogenicity domain-containing protein YP_178234.1 206043 D 195099 CDS YP_178235.1 57237223 3230975 206505..206687 1 NC_003912.7 identified by similarity to SP:P76017; pathogenicity protein,-like protein 206687 3230975 CJE0212 Campylobacter jejuni RM1221 pathogenicity protein,-like protein YP_178235.1 206505 D 195099 CDS YP_178236.1 57237224 3230976 complement(207115..207315) 1 NC_003912.7 hypothetical protein 207315 3230976 CJE0213 Campylobacter jejuni RM1221 hypothetical protein YP_178236.1 207115 R 195099 CDS YP_178237.1 57237225 3230977 207469..207564 1 NC_003912.7 hypothetical protein 207564 3230977 CJE0214 Campylobacter jejuni RM1221 hypothetical protein YP_178237.1 207469 D 195099 CDS YP_178238.1 57237226 3230978 207610..208239 1 NC_003912.7 identified by similarity to SP:P14819; match to protein family HMM PF00717; phage repressor protein 208239 3230978 CJE0215 Campylobacter jejuni RM1221 phage repressor protein YP_178238.1 207610 D 195099 CDS YP_178239.1 57237227 3230979 208320..208640 1 NC_003912.7 hypothetical protein 208640 3230979 CJE0216 Campylobacter jejuni RM1221 hypothetical protein YP_178239.1 208320 D 195099 CDS YP_178240.1 57237228 3230980 208650..208844 1 NC_003912.7 identified by similarity to GP:29424997; hypothetical protein 208844 3230980 CJE0217 Campylobacter jejuni RM1221 hypothetical protein YP_178240.1 208650 D 195099 CDS YP_178241.1 57237229 3230981 complement(208876..208992) 1 NC_003912.7 hypothetical protein 208992 3230981 CJE0218 Campylobacter jejuni RM1221 hypothetical protein YP_178241.1 208876 R 195099 CDS YP_178242.1 57237230 3230982 209029..209211 1 NC_003912.7 hypothetical protein 209211 3230982 CJE0219 Campylobacter jejuni RM1221 hypothetical protein YP_178242.1 209029 D 195099 CDS YP_178243.1 57237231 3230983 complement(209239..210054) 1 NC_003912.7 identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; DNA adenine methylase 210054 dam 3230983 dam Campylobacter jejuni RM1221 DNA adenine methylase YP_178243.1 209239 R 195099 CDS YP_178244.1 57237232 3230984 complement(210256..210744) 1 NC_003912.7 identified by similarity to SP:Q57777; phage virion morphogenesis protein 210744 3230984 CJE0221 Campylobacter jejuni RM1221 phage virion morphogenesis protein YP_178244.1 210256 R 195099 CDS YP_178245.1 57237233 3230985 complement(210748..212964) 1 NC_003912.7 identified by similarity to OMNI:WD0570; match to protein family HMM TIGR01369; match to protein family HMM TIGR01760; TP901 family tail tape measure protein 212964 3230985 CJE0222 Campylobacter jejuni RM1221 TP901 family tail tape measure protein YP_178245.1 210748 R 195099 CDS YP_178246.1 57237234 3230986 212985..213311 1 NC_003912.7 hypothetical protein 213311 3230986 CJE0223 Campylobacter jejuni RM1221 hypothetical protein YP_178246.1 212985 D 195099 CDS YP_178247.1 57237235 3230987 complement(213298..213396) 1 NC_003912.7 hypothetical protein 213396 3230987 CJE0224 Campylobacter jejuni RM1221 hypothetical protein YP_178247.1 213298 R 195099 CDS YP_178248.1 57237236 3230988 complement(213423..213662) 1 NC_003912.7 identified by similarity to GP:15278360; hypothetical protein 213662 3230988 CJE0225 Campylobacter jejuni RM1221 hypothetical protein YP_178248.1 213423 R 195099 CDS YP_178249.1 57237237 3230989 complement(213815..214324) 1 NC_003912.7 phage major tail tube protein 214324 3230989 CJE0226 Campylobacter jejuni RM1221 phage major tail tube protein YP_178249.1 213815 R 195099 CDS YP_178250.1 57237238 3230990 complement(214351..215544) 1 NC_003912.7 identified by similarity to SP:P22501; major tail sheath protein 215544 3230990 CJE0227 Campylobacter jejuni RM1221 major tail sheath protein YP_178250.1 214351 R 195099 CDS YP_178251.1 57237239 3230991 complement(215555..216568) 1 NC_003912.7 hypothetical protein 216568 3230991 CJE0228 Campylobacter jejuni RM1221 hypothetical protein YP_178251.1 215555 R 195099 CDS YP_178252.1 57237240 3230992 complement(216668..217039) 1 NC_003912.7 identified by similarity to OMNI:NTL03ST1666; hypothetical protein 217039 3230992 CJE0229 Campylobacter jejuni RM1221 hypothetical protein YP_178252.1 216668 R 195099 CDS YP_178253.1 57237241 3230993 complement(217036..217542) 1 NC_003912.7 hypothetical protein 217542 3230993 CJE0230 Campylobacter jejuni RM1221 hypothetical protein YP_178253.1 217036 R 195099 CDS YP_178254.1 57237242 3230994 complement(217552..218631) 1 NC_003912.7 identified by similarity to GB:AAP04455.1; tail fiber protein H 218631 3230994 CJE0231 Campylobacter jejuni RM1221 tail fiber protein H YP_178254.1 217552 R 195099 CDS YP_178255.1 57237243 3230995 complement(218631..219251) 1 NC_003912.7 identified by similarity to GB:AAL23025.1; phage tail protein 219251 3230995 CJE0232 Campylobacter jejuni RM1221 phage tail protein YP_178255.1 218631 R 195099 CDS YP_178256.1 57237244 3230996 complement(219248..220414) 1 NC_003912.7 identified by similarity to OMNI:PP3054; match to protein family HMM PF04865; baseplate assembly protein J 220414 3230996 CJE0233 Campylobacter jejuni RM1221 baseplate assembly protein J YP_178256.1 219248 R 195099 CDS YP_178257.1 57237245 3230997 complement(220411..220692) 1 NC_003912.7 identified by similarity to GP:8670757; match to protein family HMM PF04965; baseplate assembly protein W 220692 3230997 CJE0234 Campylobacter jejuni RM1221 baseplate assembly protein W YP_178257.1 220411 R 195099 CDS YP_178258.1 57237246 3230998 complement(220698..220889) 1 NC_003912.7 hypothetical protein 220889 3230998 CJE0235 Campylobacter jejuni RM1221 hypothetical protein YP_178258.1 220698 R 195099 CDS YP_178259.1 57237247 3230999 complement(220898..221530) 1 NC_003912.7 identified by similarity to SP:P31340; match to protein family HMM PF04717; match to protein family HMM TIGR01644; baseplate assembly protein V 221530 3230999 CJE0236 Campylobacter jejuni RM1221 baseplate assembly protein V YP_178259.1 220898 R 195099 CDS YP_178260.1 57237248 3231000 complement(221530..221844) 1 NC_003912.7 identified by similarity to GP:8670755; hypothetical protein 221844 3231000 CJE0237 Campylobacter jejuni RM1221 hypothetical protein YP_178260.1 221530 R 195099 CDS YP_178261.1 57237249 3231001 complement(221847..221969) 1 NC_003912.7 hypothetical protein 221969 3231001 CJE0238 Campylobacter jejuni RM1221 hypothetical protein YP_178261.1 221847 R 195099 CDS YP_178262.1 57237250 3231002 complement(221956..222192) 1 NC_003912.7 lipoprotein 222192 3231002 CJE0239 Campylobacter jejuni RM1221 lipoprotein YP_178262.1 221956 R 195099 CDS YP_178263.1 57237251 3231003 complement(222201..222542) 1 NC_003912.7 hypothetical protein 222542 3231003 CJE0240 Campylobacter jejuni RM1221 hypothetical protein YP_178263.1 222201 R 195099 CDS YP_178264.1 57237252 3231004 complement(222553..222942) 1 NC_003912.7 hypothetical protein 222942 3231004 CJE0241 Campylobacter jejuni RM1221 hypothetical protein YP_178264.1 222553 R 195099 CDS YP_178265.1 57238717 3232505 complement(223009..223182) 1 NC_003912.7 hypothetical protein 223182 3232505 CJE0242 Campylobacter jejuni RM1221 hypothetical protein YP_178265.1 223009 R 195099 CDS YP_178266.1 57237253 3231005 223091..223525 1 NC_003912.7 hypothetical protein 223525 3231005 CJE0243 Campylobacter jejuni RM1221 hypothetical protein YP_178266.1 223091 D 195099 CDS YP_178267.1 57237254 3231006 223527..224342 1 NC_003912.7 identified by similarity to SP:Q01267; Mu-like prophage I protein 224342 3231006 CJE0244 Campylobacter jejuni RM1221 Mu-like prophage I protein YP_178267.1 223527 D 195099 CDS YP_178268.1 57237255 3231007 224507..224872 1 NC_003912.7 hypothetical protein 224872 3231007 CJE0245 Campylobacter jejuni RM1221 hypothetical protein YP_178268.1 224507 D 195099 CDS YP_178269.1 57237256 3231008 224875..225852 1 NC_003912.7 identified by similarity to OMNI:PSPTO3407; hypothetical protein 225852 3231008 CJE0246 Campylobacter jejuni RM1221 hypothetical protein YP_178269.1 224875 D 195099 CDS YP_178270.1 57237257 3231009 226028..226426 1 NC_003912.7 identified by similarity to SP:O60488; hypothetical protein 226426 3231009 CJE0247 Campylobacter jejuni RM1221 hypothetical protein YP_178270.1 226028 D 195099 CDS YP_178271.1 57237258 3231010 226419..227018 1 NC_003912.7 hypothetical protein 227018 3231010 CJE0248 Campylobacter jejuni RM1221 hypothetical protein YP_178271.1 226419 D 195099 CDS YP_178272.1 57237259 3231011 227105..228688 1 NC_003912.7 identified by match to protein family HMM TIGR01630; phage uncharacterized protein 228688 3231011 CJE0249 Campylobacter jejuni RM1221 phage uncharacterized protein YP_178272.1 227105 D 195099 CDS YP_178273.1 57237260 3231012 228698..230068 1 NC_003912.7 hypothetical protein 230068 3231012 CJE0250 Campylobacter jejuni RM1221 hypothetical protein YP_178273.1 228698 D 195099 CDS YP_178274.1 57237261 3231013 230070..231308 1 NC_003912.7 identified by similarity to SP:Q01259; match to protein family HMM PF04233; prophage MuSo1, F protein 231308 3231013 CJE0251 Campylobacter jejuni RM1221 prophage MuSo1, F protein YP_178274.1 230070 D 195099 CDS YP_178275.1 57237262 3231014 231434..231808 1 NC_003912.7 identified by similarity to GB:AAP04463.1; phage tail protein 231808 3231014 CJE0252 Campylobacter jejuni RM1221 phage tail protein YP_178275.1 231434 D 195099 CDS YP_178276.1 57237263 3231015 231801..231992 1 NC_003912.7 identified by similarity to GP:915369; match to protein family HMM PF05489; tail protein X 231992 3231015 CJE0253 Campylobacter jejuni RM1221 tail protein X YP_178276.1 231801 D 195099 CDS YP_178277.1 57237264 3231016 231986..232963 1 NC_003912.7 identified by similarity to SP:P21679; tail protein D 232963 3231016 CJE0254 Campylobacter jejuni RM1221 tail protein D YP_178277.1 231986 D 195099 CDS YP_178278.1 57237265 3231017 complement(232960..233244) 1 NC_003912.7 identified by similarity to SP:Q47588; DNA-binding protein 233244 3231017 CJE0255 Campylobacter jejuni RM1221 DNA-binding protein YP_178278.1 232960 R 195099 CDS YP_178279.1 57237266 3231018 233338..234009 1 NC_003912.7 identified by similarity to SP:P39658; match to protein family HMM PF04231; extracellular deoxyribonuclease 234009 dns 3231018 dns Campylobacter jejuni RM1221 extracellular deoxyribonuclease YP_178279.1 233338 D 195099 CDS YP_178280.1 57237267 3231019 complement(234001..234276) 1 NC_003912.7 identified by similarity to GP:4587560; hypothetical protein 234276 3231019 CJE0257 Campylobacter jejuni RM1221 hypothetical protein YP_178280.1 234001 R 195099 CDS YP_178281.1 57237268 3231020 complement(234323..234772) 1 NC_003912.7 identified by similarity to GB:AAA32406.1; hypothetical protein 234772 3231020 CJE0258 Campylobacter jejuni RM1221 hypothetical protein YP_178281.1 234323 R 195099 CDS YP_178282.1 57237269 3231021 complement(234769..235461) 1 NC_003912.7 hypothetical protein 235461 3231021 CJE0259 Campylobacter jejuni RM1221 hypothetical protein YP_178282.1 234769 R 195099 CDS YP_178283.1 57237270 3231022 complement(235461..235730) 1 NC_003912.7 hypothetical protein 235730 3231022 CJE0260 Campylobacter jejuni RM1221 hypothetical protein YP_178283.1 235461 R 195099 CDS YP_178284.1 57237271 3231023 complement(235727..236689) 1 NC_003912.7 hypothetical protein 236689 3231023 CJE0261 Campylobacter jejuni RM1221 hypothetical protein YP_178284.1 235727 R 195099 CDS YP_178285.1 57237272 3231024 complement(236798..237184) 1 NC_003912.7 identified by similarity to PIR:AI1363; match to protein family HMM TIGR01671; hypothetical protein 237184 3231024 CJE0262 Campylobacter jejuni RM1221 hypothetical protein YP_178285.1 236798 R 195099 CDS YP_178286.1 57237273 3231025 complement(237181..237453) 1 NC_003912.7 hypothetical protein 237453 3231025 CJE0263 Campylobacter jejuni RM1221 hypothetical protein YP_178286.1 237181 R 195099 CDS YP_178287.1 57237274 3231026 complement(237517..237696) 1 NC_003912.7 hypothetical protein 237696 3231026 CJE0264 Campylobacter jejuni RM1221 hypothetical protein YP_178287.1 237517 R 195099 CDS YP_178288.1 57237275 3231027 complement(237693..238178) 1 NC_003912.7 identified by similarity to SP:P06023; host-nuclease inhibitor protein Gam 238178 3231027 CJE0265 Campylobacter jejuni RM1221 host-nuclease inhibitor protein Gam YP_178288.1 237693 R 195099 CDS YP_178289.1 57237276 3231028 complement(238285..238626) 1 NC_003912.7 identified by similarity to OMNI:AF2353; hypothetical protein 238626 3231028 CJE0266 Campylobacter jejuni RM1221 hypothetical protein YP_178289.1 238285 R 195099 CDS YP_178290.1 57237277 3231029 complement(238722..238907) 1 NC_003912.7 hypothetical protein 238907 3231029 CJE0267 Campylobacter jejuni RM1221 hypothetical protein YP_178290.1 238722 R 195099 CDS YP_178291.1 57237278 3231030 complement(238891..239094) 1 NC_003912.7 hypothetical protein 239094 3231030 CJE0268 Campylobacter jejuni RM1221 hypothetical protein YP_178291.1 238891 R 195099 CDS YP_178292.1 57237279 3231031 complement(239097..240020) 1 NC_003912.7 identified by similarity to SP:P03763; bacteriophage DNA transposition protein B 240020 3231031 CJE0269 Campylobacter jejuni RM1221 bacteriophage DNA transposition protein B YP_178292.1 239097 R 195099 CDS YP_178293.1 57237280 3231032 complement(240090..242162) 1 NC_003912.7 identified by match to protein family HMM PF00665; bacteriophage DNA transposition protein A 242162 3231032 CJE0270 Campylobacter jejuni RM1221 bacteriophage DNA transposition protein A YP_178293.1 240090 R 195099 CDS YP_178294.1 57237281 3231033 complement(242162..242362) 1 NC_003912.7 hypothetical protein 242362 3231033 CJE0271 Campylobacter jejuni RM1221 hypothetical protein YP_178294.1 242162 R 195099 CDS YP_178295.1 57237282 3231034 242507..243139 1 NC_003912.7 identified by similarity to GB:AAL25916.1; match to protein family HMM PF00717; match to protein family HMM PF01381; transcriptional regulator 243139 3231034 CJE0272 Campylobacter jejuni RM1221 transcriptional regulator YP_178295.1 242507 D 195099 CDS YP_178296.1 57237283 3231035 243155..244132 1 NC_003912.7 hypothetical protein 244132 3231035 CJE0273 Campylobacter jejuni RM1221 hypothetical protein YP_178296.1 243155 D 195099 CDS YP_178297.1 57237284 3231037 244537..245565 1 NC_003912.7 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 245565 argC 3231037 argC Campylobacter jejuni RM1221 N-acetyl-gamma-glutamyl-phosphate reductase YP_178297.1 244537 D 195099 CDS YP_178298.1 57237285 3231038 245575..246021 1 NC_003912.7 identified by match to protein family HMM PF00583; acetyltransferase 246021 3231038 CJE0276 Campylobacter jejuni RM1221 acetyltransferase YP_178298.1 245575 D 195099 CDS YP_178299.1 57237286 3231039 246031..246870 1 NC_003912.7 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 246870 argB 3231039 argB Campylobacter jejuni RM1221 acetylglutamate kinase YP_178299.1 246031 D 195099 CDS YP_178300.1 57237287 3231040 246880..248061 1 NC_003912.7 identified by similarity to SP:P18544; match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine aminotransferase 248061 argD 3231040 argD Campylobacter jejuni RM1221 acetylornithine aminotransferase YP_178300.1 246880 D 195099 CDS YP_178301.1 57237288 3231041 complement(248081..248710) 1 NC_003912.7 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 248710 pcm 3231041 pcm Campylobacter jejuni RM1221 protein-L-isoaspartate O-methyltransferase YP_178301.1 248081 R 195099 CDS YP_178302.1 57237289 3231042 248799..249347 1 NC_003912.7 identified by match to protein family HMM PF00132; hypothetical protein 249347 3231042 CJE0280 Campylobacter jejuni RM1221 hypothetical protein YP_178302.1 248799 D 195099 CDS YP_178303.1 57237290 3231043 complement(249316..250686) 1 NC_003912.7 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 250686 3231043 CJE0281 Campylobacter jejuni RM1221 nicotinate phosphoribosyltransferase YP_178303.1 249316 R 195099 CDS YP_178304.1 57237291 3231044 complement(250676..251698) 1 NC_003912.7 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 251698 nrdF 3231044 nrdF Campylobacter jejuni RM1221 ribonucleotide-diphosphate reductase subunit beta YP_178304.1 250676 R 195099 CDS YP_178305.1 57237292 3231045 complement(251701..252123) 1 NC_003912.7 identified by similarity to OMNI:HP1258; hypothetical protein 252123 3231045 CJE0283 Campylobacter jejuni RM1221 hypothetical protein YP_178305.1 251701 R 195099 CDS YP_178306.1 57237293 3231046 complement(252124..252732) 1 NC_003912.7 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 252732 pyrE 3231046 pyrE Campylobacter jejuni RM1221 orotate phosphoribosyltransferase YP_178306.1 252124 R 195099 CDS YP_178307.1 57237294 3231047 complement(252735..253292) 1 NC_003912.7 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 253292 frr 3231047 frr Campylobacter jejuni RM1221 ribosome recycling factor YP_178307.1 252735 R 195099 CDS YP_178308.1 57237295 3231048 complement(253308..253679) 1 NC_003912.7 identified by similarity to SP:P33582; match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 253679 secG 3231048 secG Campylobacter jejuni RM1221 preprotein translocase subunit SecG YP_178308.1 253308 R 195099 CDS YP_178309.1 57237296 3231049 complement(253783..254478) 1 NC_003912.7 identified by similarity to SP:O25578; match to protein family HMM PF01027; hypothetical protein 254478 3231049 CJE0287 Campylobacter jejuni RM1221 hypothetical protein YP_178309.1 253783 R 195099 CDS YP_178310.1 57237297 3231050 254639..255274 1 NC_003912.7 identified by similarity to SP:P17582; match to protein family HMM PF00484; carbonic anhydrase 255274 cynT 3231050 cynT Campylobacter jejuni RM1221 carbonic anhydrase YP_178310.1 254639 D 195099 CDS YP_178311.1 57237298 3231051 255271..257154 1 NC_003912.7 identified by similarity to SP:P77253; match to protein family HMM PF00924; mechanosensitive ion channel family protein 257154 3231051 CJE0289 Campylobacter jejuni RM1221 mechanosensitive ion channel family protein YP_178311.1 255271 D 195099 CDS YP_178312.1 57237299 3231052 complement(257177..258148) 1 NC_003912.7 identified by similarity to SP:P05343; match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; NifU family protein 258148 3231052 CJE0290 Campylobacter jejuni RM1221 NifU family protein YP_178312.1 257177 R 195099 CDS YP_178313.1 57237300 3231053 complement(258158..259339) 1 NC_003912.7 catalyzes the removal of sulfur from cysteine to form alanine; cysteine desulfurase 259339 3231053 CJE0291 Campylobacter jejuni RM1221 cysteine desulfurase YP_178313.1 258158 R 195099 CDS YP_178314.1 57237301 3231055 complement(260051..261217) 1 NC_003912.7 identified by similarity to GP:23498399; hypothetical protein 261217 3231055 CJE0293 Campylobacter jejuni RM1221 hypothetical protein YP_178314.1 260051 R 195099 CDS YP_178315.1 57237302 3231056 261376..261567 1 NC_003912.7 identified by similarity to SP:P55874; match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 261567 rpmI 3231056 rpmI Campylobacter jejuni RM1221 50S ribosomal protein L35 YP_178315.1 261376 D 195099 CDS YP_178316.1 57237303 3231057 261661..262014 1 NC_003912.7 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 262014 rplT 3231057 rplT Campylobacter jejuni RM1221 50S ribosomal protein L20 YP_178316.1 261661 D 195099 CDS YP_178317.1 57237304 3231058 complement(262073..262555) 1 NC_003912.7 identified by similarity to GP:27352453; hypothetical protein 262555 3231058 CJE0296 Campylobacter jejuni RM1221 hypothetical protein YP_178317.1 262073 R 195099 CDS YP_178318.1 57237305 3231060 263633..264490 1 NC_003912.7 identified by similarity to GP:28203787; hypothetical protein 264490 3231060 CJE0298 Campylobacter jejuni RM1221 hypothetical protein YP_178318.1 263633 D 195099 CDS YP_178319.1 57237306 3231061 264521..264997 1 NC_003912.7 hypothetical protein 264997 3231061 CJE0299 Campylobacter jejuni RM1221 hypothetical protein YP_178319.1 264521 D 195099 CDS YP_178320.1 57237307 3231062 complement(264966..266276) 1 NC_003912.7 identified by match to protein family HMM PF00083; major facilitator superfamily protein 266276 3231062 CJE0300 Campylobacter jejuni RM1221 major facilitator superfamily protein YP_178320.1 264966 R 195099 CDS YP_178321.1 57237308 3231063 complement(266260..266436) 1 NC_003912.7 hypothetical protein 266436 3231063 CJE0301 Campylobacter jejuni RM1221 hypothetical protein YP_178321.1 266260 R 195099 CDS YP_178322.1 57237309 3231064 266529..267002 1 NC_003912.7 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 267002 moaC 3231064 moaC Campylobacter jejuni RM1221 molybdenum cofactor biosynthesis protein MoaC YP_178322.1 266529 D 195099 CDS YP_178323.1 57237310 3231065 266980..267243 1 NC_003912.7 identified by similarity to SP:O25237; hypothetical protein 267243 3231065 CJE0303 Campylobacter jejuni RM1221 hypothetical protein YP_178323.1 266980 D 195099 CDS YP_178324.1 57237311 3231066 267257..268393 1 NC_003912.7 hypothetical protein 268393 3231066 CJE0304 Campylobacter jejuni RM1221 hypothetical protein YP_178324.1 267257 D 195099 CDS YP_178325.1 57237312 3231067 complement(268412..269191) 1 NC_003912.7 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 269191 xth 3231067 xth Campylobacter jejuni RM1221 exodeoxyribonuclease III YP_178325.1 268412 R 195099 CDS YP_178326.1 57237313 3231068 269288..270826 1 NC_003912.7 identified by match to protein family HMM PF00884; match to protein family HMM PF02418; sulfatase 270826 3231068 CJE0306 Campylobacter jejuni RM1221 sulfatase YP_178326.1 269288 D 195099 CDS YP_178327.1 57237314 3231069 270823..271179 1 NC_003912.7 identified by similarity to SP:P00556; match to protein family HMM PF01219; diacylglycerol kinase 271179 dgkA 3231069 dgkA Campylobacter jejuni RM1221 diacylglycerol kinase YP_178327.1 270823 D 195099 CDS YP_178328.1 57237315 3231070 271176..271403 1 NC_003912.7 hypothetical protein 271403 3231070 CJE0308 Campylobacter jejuni RM1221 hypothetical protein YP_178328.1 271176 D 195099 CDS YP_178329.1 57237316 3231071 271412..272407 1 NC_003912.7 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 272407 pyrC 3231071 pyrC Campylobacter jejuni RM1221 dihydroorotase YP_178329.1 271412 D 195099 CDS YP_178330.1 57237317 3231072 272329..275679 1 NC_003912.7 identified by similarity to OMNI:BBQ67; match to protein family HMM TIGR01612; D12 class N6 adenine-specific DNA methyltransferase 275679 3231072 CJE0310 Campylobacter jejuni RM1221 D12 class N6 adenine-specific DNA methyltransferase YP_178330.1 272329 D 195099 CDS YP_178331.1 57237318 3231073 complement(275685..276398) 1 NC_003912.7 hypothetical protein 276398 3231073 CJE0311 Campylobacter jejuni RM1221 hypothetical protein YP_178331.1 275685 R 195099 CDS YP_178332.1 57237319 3231074 complement(276479..278467) 1 NC_003912.7 identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM PF05581; methyl-accepting chemotaxis protein 278467 3231074 CJE0312 Campylobacter jejuni RM1221 methyl-accepting chemotaxis protein YP_178332.1 276479 R 195099 CDS YP_178333.1 57237320 3231075 278663..279538 1 NC_003912.7 identified by similarity to SP:P24198; match to protein family HMM PF02535; zinc transporter ZupT 279538 3231075 CJE0313 Campylobacter jejuni RM1221 zinc transporter ZupT YP_178333.1 278663 D 195099 CDS YP_178334.1 57237321 3231076 complement(279637..281616) 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ00137; match to protein family HMM PF00015; methyl-accepting chemotaxis protein 281616 3231076 CJE0314 Campylobacter jejuni RM1221 methyl-accepting chemotaxis protein YP_178334.1 279637 R 195099 CDS YP_178335.1 57237322 3231077 complement(281817..282326) 1 NC_003912.7 hypothetical protein 282326 3231077 CJE0315 Campylobacter jejuni RM1221 hypothetical protein YP_178335.1 281817 R 195099 CDS YP_178336.1 57237323 3231078 complement(282326..282835) 1 NC_003912.7 hypothetical protein 282835 3231078 CJE0316 Campylobacter jejuni RM1221 hypothetical protein YP_178336.1 282326 R 195099 CDS YP_178337.1 57237324 3231079 complement(282869..283957) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00232; match to protein family HMM PF01145; SPFH domain-containing protein 283957 3231079 CJE0317 Campylobacter jejuni RM1221 SPFH domain-containing protein YP_178337.1 282869 R 195099 CDS YP_178338.1 57237325 3231080 complement(283970..284884) 1 NC_003912.7 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 284884 ilvE 3231080 ilvE Campylobacter jejuni RM1221 branched-chain amino acid aminotransferase YP_178338.1 283970 R 195099 CDS YP_178339.1 57237326 3231081 285060..285266 1 NC_003912.7 identified by match to protein family HMM PF01361; 4-oxalocrotonate tautomerase 285266 3231081 CJE0319 Campylobacter jejuni RM1221 4-oxalocrotonate tautomerase YP_178339.1 285060 D 195099 CDS YP_178340.1 57237327 3231082 285263..285718 1 NC_003912.7 identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 285718 3231082 CJE0320 Campylobacter jejuni RM1221 anti-oxidant AhpCTSA family protein YP_178340.1 285263 D 195099 CDS YP_178341.1 57237328 3231083 285718..286809 1 NC_003912.7 identified by similarity to OMNI:NTL01AA00490; match to protein family HMM PF02677; hypothetical protein 286809 3231083 CJE0321 Campylobacter jejuni RM1221 hypothetical protein YP_178341.1 285718 D 195099 CDS YP_178342.1 57237329 3231084 286903..287343 1 NC_003912.7 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 287343 fabZ 3231084 fabZ Campylobacter jejuni RM1221 (3R)-hydroxymyristoyl-ACP dehydratase YP_178342.1 286903 D 195099 CDS YP_178343.1 57237330 3231085 287343..288134 1 NC_003912.7 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 288134 lpxA 3231085 lpxA Campylobacter jejuni RM1221 UDP-N-acetylglucosamine acyltransferase YP_178343.1 287343 D 195099 CDS YP_178344.1 57237331 3231086 288127..289350 1 NC_003912.7 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 289350 clpX 3231086 clpX Campylobacter jejuni RM1221 ATP-dependent protease ATP-binding subunit ClpX YP_178344.1 288127 D 195099 CDS YP_178345.1 57237332 3231087 289361..290401 1 NC_003912.7 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 290401 mreB 3231087 mreB Campylobacter jejuni RM1221 rod shape-determining protein MreB YP_178345.1 289361 D 195099 CDS YP_178346.1 57237333 3231088 290391..291140 1 NC_003912.7 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 291140 3231088 CJE0326 Campylobacter jejuni RM1221 rod shape-determining protein MreC YP_178346.1 290391 D 195099 CDS YP_178347.1 57237334 3231089 291401..294670 1 NC_003912.7 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 294670 carB 3231089 carB Campylobacter jejuni RM1221 carbamoyl phosphate synthase large subunit YP_178347.1 291401 D 195099 CDS YP_178348.1 57237335 3231090 294667..295089 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00845; hypothetical protein 295089 3231090 CJE0328 Campylobacter jejuni RM1221 hypothetical protein YP_178348.1 294667 D 195099 CDS YP_178349.1 57237336 3231091 complement(295090..296067) 1 NC_003912.7 Important for the balance of metabolites in the pentose-phosphate pathway; transaldolase 296067 tal 3231091 tal Campylobacter jejuni RM1221 transaldolase YP_178349.1 295090 R 195099 CDS YP_178350.1 57237337 3231092 complement(296067..296690) 1 NC_003912.7 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB 296690 serB 3231092 serB Campylobacter jejuni RM1221 phosphoserine phosphatase SerB YP_178350.1 296067 R 195099 CDS YP_178351.1 57237338 3231093 complement(296690..297211) 1 NC_003912.7 identified by similarity to SP:P39802; match to protein family HMM PF01584; chemotaxis protein CheW 297211 cheW 3231093 cheW Campylobacter jejuni RM1221 chemotaxis protein CheW YP_178351.1 296690 R 195099 CDS YP_178352.1 57237339 3231094 complement(297216..299525) 1 NC_003912.7 identified by similarity to GP:3493635; match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis protein CheA 299525 cheA 3231094 cheA Campylobacter jejuni RM1221 chemotaxis protein CheA YP_178352.1 297216 R 195099 CDS YP_178353.1 57237340 3231095 complement(299529..300485) 1 NC_003912.7 identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV 300485 cheV 3231095 cheV Campylobacter jejuni RM1221 chemotaxis protein CheV YP_178353.1 299529 R 195099 CDS YP_178354.1 57237341 3231096 complement(300478..301113) 1 NC_003912.7 identified by similarity to OMNI:HP0394; hypothetical protein 301113 3231096 CJE0334 Campylobacter jejuni RM1221 hypothetical protein YP_178354.1 300478 R 195099 CDS YP_178355.1 57237342 3231097 complement(301246..301731) 1 NC_003912.7 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 301731 greA 3231097 greA Campylobacter jejuni RM1221 transcription elongation factor GreA YP_178355.1 301246 R 195099 CDS YP_178356.1 57237343 3231098 complement(301743..302837) 1 NC_003912.7 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 302837 lpxB 3231098 lpxB Campylobacter jejuni RM1221 lipid-A-disaccharide synthase YP_178356.1 301743 R 195099 CDS YP_178357.1 57237344 3231099 complement(302934..303686) 1 NC_003912.7 identified by similarity to GP:558481; similarity to PIR:C41161; major antigenic peptide PEB3 303686 3231099 CJE0337 Campylobacter jejuni RM1221 major antigenic peptide PEB3 YP_178357.1 302934 R 195099 CDS YP_178358.1 57237345 3231101 305377..306153 1 NC_003912.7 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 306153 surE 3231101 surE Campylobacter jejuni RM1221 stationary phase survival protein SurE YP_178358.1 305377 D 195099 CDS YP_178359.1 57237346 3231102 306146..306796 1 NC_003912.7 identified by match to protein family HMM PF00899; thiF family protein 306796 3231102 CJE0340 Campylobacter jejuni RM1221 thiF family protein YP_178359.1 306146 D 195099 CDS YP_178360.1 57237347 3231103 complement(306871..307251) 1 NC_003912.7 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 307251 panD 3231103 panD Campylobacter jejuni RM1221 aspartate alpha-decarboxylase YP_178360.1 306871 R 195099 CDS YP_178361.1 57237348 3231104 complement(307248..308096) 1 NC_003912.7 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 308096 panC 3231104 panC Campylobacter jejuni RM1221 pantoate--beta-alanine ligase YP_178361.1 307248 R 195099 CDS YP_178362.1 57237349 3231105 complement(308107..308931) 1 NC_003912.7 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 308931 panB 3231105 panB Campylobacter jejuni RM1221 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_178362.1 308107 R 195099 CDS YP_178363.1 57237350 3231106 309148..309909 1 NC_003912.7 identified by similarity to SP:P14489; match to protein family HMM PF00905; beta-lactamase 309909 3231106 CJE0344 Campylobacter jejuni RM1221 beta-lactamase YP_178363.1 309148 D 195099 CDS YP_178364.1 57237351 3231107 complement(310007..310891) 1 NC_003912.7 identified by similarity to SP:P09833; match to protein family HMM PF00005; molybdenum ABC transporter ATP-binding protein 310891 modC 3231107 modC Campylobacter jejuni RM1221 molybdenum ABC transporter ATP-binding protein YP_178364.1 310007 R 195099 CDS YP_178365.1 57237352 3231108 complement(310901..311569) 1 NC_003912.7 identified by similarity to SP:P37731; match to protein family HMM PF00528; molybdenum ABC transporter permease 311569 modB 3231108 modB Campylobacter jejuni RM1221 molybdenum ABC transporter permease YP_178365.1 310901 R 195099 CDS YP_178366.1 57237353 3231109 complement(311562..311963) 1 NC_003912.7 identified by match to protein family HMM PF03459; TOBE domain-containing protein 311963 3231109 CJE0347 Campylobacter jejuni RM1221 TOBE domain-containing protein YP_178366.1 311562 R 195099 CDS YP_178367.1 57237354 3231110 complement(311960..312709) 1 NC_003912.7 identified by similarity to SP:Q08383; match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdenum ABC transporter periplasmic molybdenum-binding protein 312709 modA 3231110 modA Campylobacter jejuni RM1221 molybdenum ABC transporter periplasmic molybdenum-binding protein YP_178367.1 311960 R 195099 CDS YP_178368.1 57237355 3231111 complement(312763..313449) 1 NC_003912.7 identified by match to protein family HMM TIGR02072; biotin biosynthesis protein BioC 313449 3231111 CJE0349 Campylobacter jejuni RM1221 biotin biosynthesis protein BioC YP_178368.1 312763 R 195099 CDS YP_178369.1 57237356 3231112 complement(313446..314057) 1 NC_003912.7 identified by similarity to OMNI:NTL01PM1904; match to protein family HMM PF04301; hypothetical protein 314057 3231112 CJE0350 Campylobacter jejuni RM1221 hypothetical protein YP_178369.1 313446 R 195099 CDS YP_178370.1 57237357 3231113 complement(314054..315196) 1 NC_003912.7 identified by similarity to SP:P53556; match to protein family HMM PF00155; 8-amino-7-oxononanoate synthase 315196 bioF 3231113 bioF Campylobacter jejuni RM1221 8-amino-7-oxononanoate synthase YP_178370.1 314054 R 195099 CDS YP_178371.1 57237358 3231114 315263..316546 1 NC_003912.7 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate transaminase 316546 bioA 3231114 bioA Campylobacter jejuni RM1221 adenosylmethionine--8-amino-7-oxononanoate transaminase YP_178371.1 315263 D 195099 CDS YP_178372.1 57237359 3231115 complement(316533..317138) 1 NC_003912.7 identified by match to protein family HMM TIGR00347; dethiobiotin synthetase 317138 bioD 3231115 bioD Campylobacter jejuni RM1221 dethiobiotin synthetase YP_178372.1 316533 R 195099 CDS YP_178373.1 57237360 3231116 complement(317148..317462) 1 NC_003912.7 identified by similarity to SP:P14319; match to protein family HMM PF00893; SMR family multidrug efflux pump 317462 3231116 CJE0354 Campylobacter jejuni RM1221 SMR family multidrug efflux pump YP_178373.1 317148 R 195099 CDS YP_178374.1 57237361 3231117 complement(317465..317803) 1 NC_003912.7 identified by match to protein family HMM PF00893; SMR family multidrug efflux pump 317803 3231117 CJE0355 Campylobacter jejuni RM1221 SMR family multidrug efflux pump YP_178374.1 317465 R 195099 CDS YP_178375.1 57237362 3231118 317935..318471 1 NC_003912.7 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 318471 rplY 3231118 rplY Campylobacter jejuni RM1221 50S ribosomal protein L25/general stress protein Ctc YP_178375.1 317935 D 195099 CDS YP_178376.1 57237363 3231119 318468..319013 1 NC_003912.7 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 319013 pth 3231119 pth Campylobacter jejuni RM1221 peptidyl-tRNA hydrolase YP_178376.1 318468 D 195099 CDS YP_178377.1 57237364 3231120 319015..320073 1 NC_003912.7 identified by similarity to GP:12228593; match to protein family HMM PF03739; hypothetical protein 320073 3231120 CJE0358 Campylobacter jejuni RM1221 hypothetical protein YP_178377.1 319015 D 195099 CDS YP_178378.1 57237365 3231121 320117..321325 1 NC_003912.7 identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 321325 lysA 3231121 lysA Campylobacter jejuni RM1221 diaminopimelate decarboxylase YP_178378.1 320117 D 195099 CDS YP_178379.1 57237366 3231122 321327..322094 1 NC_003912.7 identified by match to protein family HMM TIGR01460; HAD family hydrolase 322094 3231122 CJE0360 Campylobacter jejuni RM1221 HAD family hydrolase YP_178379.1 321327 D 195099 CDS YP_178380.1 57237367 3231123 322082..323155 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ00292; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807; chorismate mutase/prephenate dehydratase 323155 pheA 3231123 pheA Campylobacter jejuni RM1221 chorismate mutase/prephenate dehydratase YP_178380.1 322082 D 195099 CDS YP_178381.1 57237368 3231124 323145..324239 1 NC_003912.7 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 324239 hisC 3231124 hisC Campylobacter jejuni RM1221 histidinol-phosphate aminotransferase YP_178381.1 323145 D 195099 CDS YP_178382.1 57237369 3231125 324291..325973 1 NC_003912.7 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 325973 fliF 3231125 fliF Campylobacter jejuni RM1221 flagellar MS-ring protein YP_178382.1 324291 D 195099 CDS YP_178383.1 57237370 3231126 325973..327001 1 NC_003912.7 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 327001 fliG 3231126 fliG Campylobacter jejuni RM1221 flagellar motor switch protein G YP_178383.1 325973 D 195099 CDS YP_178384.1 57237371 3231127 327009..327839 1 NC_003912.7 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 327839 fliH 3231127 fliH Campylobacter jejuni RM1221 flagellar assembly protein H YP_178384.1 327009 D 195099 CDS YP_178385.1 57237372 3231128 327832..329679 1 NC_003912.7 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 329679 dxs 3231128 dxs Campylobacter jejuni RM1221 1-deoxy-D-xylulose-5-phosphate synthase YP_178385.1 327832 D 195099 CDS YP_178386.1 57237373 3231129 329765..330175 1 NC_003912.7 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 330175 3231129 CJE0367 Campylobacter jejuni RM1221 FUR family transcriptional regulator YP_178386.1 329765 D 195099 CDS YP_178387.1 57237374 3231130 330221..331417 1 NC_003912.7 hypothetical protein 331417 3231130 CJE0368 Campylobacter jejuni RM1221 hypothetical protein YP_178387.1 330221 D 195099 CDS YP_178388.1 57237375 3231131 331420..332127 1 NC_003912.7 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 332127 ubiE 3231131 ubiE Campylobacter jejuni RM1221 ubiquinone/menaquinone biosynthesis methyltransferase YP_178388.1 331420 D 195099 CDS YP_178389.1 57237376 3231132 332124..333287 1 NC_003912.7 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 333287 xseA 3231132 xseA Campylobacter jejuni RM1221 exodeoxyribonuclease VII large subunit YP_178389.1 332124 D 195099 CDS YP_178390.1 57237377 3231133 333297..334373 1 NC_003912.7 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 334373 serC 3231133 serC Campylobacter jejuni RM1221 phosphoserine aminotransferase YP_178390.1 333297 D 195099 CDS YP_178391.1 57237378 3231134 334370..334720 1 NC_003912.7 identified by match to protein family HMM PF01042; endoribonuclease L-PSP family protein 334720 3231134 CJE0372 Campylobacter jejuni RM1221 endoribonuclease L-PSP family protein YP_178391.1 334370 D 195099 CDS YP_178392.1 57237379 3231135 complement(334717..335691) 1 NC_003912.7 FabH; beta-ketoacyl-ACP synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-ACP synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase III 335691 fabH 3231135 fabH Campylobacter jejuni RM1221 3-oxoacyl-ACP synthase III YP_178392.1 334717 R 195099 CDS YP_178393.1 57237380 3231136 complement(335684..336670) 1 NC_003912.7 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 336670 plsX 3231136 plsX Campylobacter jejuni RM1221 glycerol-3-phosphate acyltransferase PlsX YP_178393.1 335684 R 195099 CDS YP_178394.1 57237381 3231137 complement(336676..336822) 1 NC_003912.7 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 336822 rpmF 3231137 rpmF Campylobacter jejuni RM1221 50S ribosomal protein L32 YP_178394.1 336676 R 195099 CDS YP_178395.1 57237382 3231138 complement(336846..337199) 1 NC_003912.7 identified by similarity to OMNI:HP0199; hypothetical protein 337199 3231138 CJE0376 Campylobacter jejuni RM1221 hypothetical protein YP_178395.1 336846 R 195099 CDS YP_178396.1 57237383 3231139 complement(337200..337613) 1 NC_003912.7 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 337613 ndk 3231139 ndk Campylobacter jejuni RM1221 nucleoside diphosphate kinase YP_178396.1 337200 R 195099 CDS YP_178397.1 57237384 3231140 complement(337726..338010) 1 NC_003912.7 identified by similarity to GP:1518927; match to protein family HMM PF00037; ferredoxin, 4Fe-4S 338010 3231140 CJE0378 Campylobacter jejuni RM1221 ferredoxin, 4Fe-4S YP_178397.1 337726 R 195099 CDS YP_178398.1 57237385 3231141 338216..338812 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ00310; match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 338812 3231141 CJE0379 Campylobacter jejuni RM1221 anti-oxidant AhpCTSA family protein YP_178398.1 338216 D 195099 CDS YP_178399.1 57237386 3231142 338931..340019 1 NC_003912.7 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 340019 flhB 3231142 flhB Campylobacter jejuni RM1221 flagellar biosynthesis protein FlhB YP_178399.1 338931 D 195099 CDS YP_178400.1 57237387 3231143 complement(340025..340768) 1 NC_003912.7 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 340768 motB 3231143 motB Campylobacter jejuni RM1221 flagellar motor protein MotB YP_178400.1 340025 R 195099 CDS YP_178401.1 57237388 3231144 complement(340771..341547) 1 NC_003912.7 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 341547 3231144 CJE0382 Campylobacter jejuni RM1221 flagellar motor protein MotA YP_178401.1 340771 R 195099 CDS YP_178402.1 57237389 3231145 complement(341564..344203) 1 NC_003912.7 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 344203 polA 3231145 polA Campylobacter jejuni RM1221 DNA polymerase I YP_178402.1 341564 R 195099 CDS YP_178403.1 57237390 3231146 344367..345728 1 NC_003912.7 identified by match to protein family HMM PF00083; major facilitator family transporter 345728 3231146 CJE0384 Campylobacter jejuni RM1221 major facilitator family transporter YP_178403.1 344367 D 195099 CDS YP_178404.1 57237391 3231147 345725..346732 1 NC_003912.7 identified by match to protein family HMM PF01156; inosine-uridine preferring nucleoside hydrolase 346732 3231147 CJE0385 Campylobacter jejuni RM1221 inosine-uridine preferring nucleoside hydrolase YP_178404.1 345725 D 195099 CDS YP_178405.1 57237392 3231148 complement(346688..347131) 1 NC_003912.7 identified by similarity to OMNI:NTL01MM0466; hypothetical protein 347131 3231148 CJE0386 Campylobacter jejuni RM1221 hypothetical protein YP_178405.1 346688 R 195099 CDS YP_178406.1 57237393 3231149 complement(347131..347727) 1 NC_003912.7 hypothetical protein 347727 3231149 CJE0387 Campylobacter jejuni RM1221 hypothetical protein YP_178406.1 347131 R 195099 CDS YP_178407.1 57237394 3231150 complement(347708..348391) 1 NC_003912.7 hypothetical protein 348391 3231150 CJE0388 Campylobacter jejuni RM1221 hypothetical protein YP_178407.1 347708 R 195099 CDS YP_178408.1 57237395 3231151 complement(348435..348986) 1 NC_003912.7 hypothetical protein 348986 3231151 CJE0389 Campylobacter jejuni RM1221 hypothetical protein YP_178408.1 348435 R 195099 CDS YP_178409.1 57237396 3231152 complement(348988..351810) 1 NC_003912.7 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 351810 uvrA 3231152 uvrA Campylobacter jejuni RM1221 excinuclease ABC subunit A YP_178409.1 348988 R 195099 CDS YP_178410.1 57237397 3231153 complement(351883..352668) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00210; match to protein family HMM PF01925; hypothetical protein 352668 3231153 CJE0391 Campylobacter jejuni RM1221 hypothetical protein YP_178410.1 351883 R 195099 CDS YP_178411.1 57237398 3231154 352768..352881 1 NC_003912.7 hypothetical protein 352881 3231154 CJE0392 Campylobacter jejuni RM1221 hypothetical protein YP_178411.1 352768 D 195099 CDS YP_178412.1 57237399 3231155 complement(352896..352994) 1 NC_003912.7 hypothetical protein 352994 3231155 CJE0393 Campylobacter jejuni RM1221 hypothetical protein YP_178412.1 352896 R 195099 CDS YP_178413.1 57237400 3231156 353084..354334 1 NC_003912.7 identified by similarity to SP:Q02001; match to protein family HMM PF00425; anthranilate synthase component I 354334 trpE 3231156 trpE Campylobacter jejuni RM1221 anthranilate synthase component I YP_178413.1 353084 D 195099 CDS YP_178414.1 57237401 3231157 354331..355932 1 NC_003912.7 identified by similarity to SP:P00904; match to protein family HMM PF00117; match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM TIGR00566; match to protein family HMM TIGR01245; anthranilate synthase component II 355932 trpD 3231157 trpD Campylobacter jejuni RM1221 anthranilate synthase component II YP_178414.1 354331 D 195099 CDS YP_178415.1 57237402 3231158 355919..356518 1 NC_003912.7 identified by match to protein family HMM PF00697; N-(5'phosphoribosyl)anthranilate isomerase 356518 trpF 3231158 trpF Campylobacter jejuni RM1221 N-(5'phosphoribosyl)anthranilate isomerase YP_178415.1 355919 D 195099 CDS YP_178416.1 57237403 3231159 356515..357693 1 NC_003912.7 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 357693 trpB 3231159 trpB Campylobacter jejuni RM1221 tryptophan synthase subunit beta YP_178416.1 356515 D 195099 CDS YP_178417.1 57237404 3231160 357686..358435 1 NC_003912.7 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 358435 trpA 3231160 trpA Campylobacter jejuni RM1221 tryptophan synthase subunit alpha YP_178417.1 357686 D 195099 CDS YP_178418.1 57237405 3231161 358506..358928 1 NC_003912.7 hypothetical protein 358928 3231161 CJE0399 Campylobacter jejuni RM1221 hypothetical protein YP_178418.1 358506 D 195099 CDS YP_178419.1 57237406 3231162 358928..359236 1 NC_003912.7 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 359236 fliN 3231162 fliN Campylobacter jejuni RM1221 flagellar motor switch protein YP_178419.1 358928 D 195099 CDS YP_178420.1 57237407 3231163 359237..360034 1 NC_003912.7 identified by similarity to GB:AAG29563.1; hypothetical protein 360034 3231163 CJE0401 Campylobacter jejuni RM1221 hypothetical protein YP_178420.1 359237 D 195099 CDS YP_178421.1 57237408 3231164 complement(360031..361491) 1 NC_003912.7 identified by match to protein family HMM PF02541; Ppx/GppA family phosphatase 361491 3231164 CJE0402 Campylobacter jejuni RM1221 Ppx/GppA family phosphatase YP_178421.1 360031 R 195099 CDS YP_178422.1 57237409 3231165 complement(361491..361736) 1 NC_003912.7 identified by similarity to SP:P00208; match to protein family HMM PF00037; ferredoxin, 4Fe-4S 361736 3231165 CJE0403 Campylobacter jejuni RM1221 ferredoxin, 4Fe-4S YP_178422.1 361491 R 195099 CDS YP_178423.1 57237410 3231166 complement(361849..362520) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00378; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 362520 3231166 CJE0404 Campylobacter jejuni RM1221 DNA-binding response regulator YP_178423.1 361849 R 195099 CDS YP_178424.1 57237411 3231167 complement(362599..362916) 1 NC_003912.7 identified by match to protein family HMM TIGR00526; FolB domain-containing protein 362916 3231167 CJE0405 Campylobacter jejuni RM1221 FolB domain-containing protein YP_178424.1 362599 R 195099 CDS YP_178425.1 57237412 3231168 complement(362901..363509) 1 NC_003912.7 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 363509 3231168 CJE0406 Campylobacter jejuni RM1221 glycerol-3-phosphate acyltransferase PlsY YP_178425.1 362901 R 195099 CDS YP_178426.1 57237413 3231169 363710..364735 1 NC_003912.7 identified by similarity to SP:P14532; match to protein family HMM PF03150; cytochrome C551 peroxidase 364735 ccpA-2 3231169 ccpA-2 Campylobacter jejuni RM1221 cytochrome C551 peroxidase YP_178426.1 363710 D 195099 CDS YP_178427.1 57237414 3231170 complement(364719..364829) 1 NC_003912.7 hypothetical protein 364829 3231170 CJE0408 Campylobacter jejuni RM1221 hypothetical protein YP_178427.1 364719 R 195099 CDS YP_178428.1 57237415 3231171 364829..366166 1 NC_003912.7 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 366166 glmM 3231171 glmM Campylobacter jejuni RM1221 phosphoglucosamine mutase YP_178428.1 364829 D 195099 CDS YP_178429.1 57237416 3231172 366159..366629 1 NC_003912.7 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 366629 lspA 3231172 lspA Campylobacter jejuni RM1221 lipoprotein signal peptidase YP_178429.1 366159 D 195099 CDS YP_178430.1 57237417 3231173 366613..367065 1 NC_003912.7 identified by similarity to SP:Q9ZJD5; match to protein family HMM PF03653; match to protein family HMM TIGR00701; hypothetical protein 367065 3231173 CJE0411 Campylobacter jejuni RM1221 hypothetical protein YP_178430.1 366613 D 195099 CDS YP_178431.1 57237418 3231174 complement(367039..368409) 1 NC_003912.7 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 368409 3231174 CJE0412 Campylobacter jejuni RM1221 coproporphyrinogen III oxidase YP_178431.1 367039 R 195099 CDS YP_178432.1 57237419 3231175 368537..368788 1 NC_003912.7 hypothetical protein 368788 3231175 CJE0413 Campylobacter jejuni RM1221 hypothetical protein YP_178432.1 368537 D 195099 CDS YP_178433.1 57237420 3231176 complement(368811..370289) 1 NC_003912.7 identified by similarity to GP:18496808; match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system, outer membrane lipoprotein CmeC 370289 cmeC 3231176 cmeC Campylobacter jejuni RM1221 RND efflux system, outer membrane lipoprotein CmeC YP_178433.1 368811 R 195099 CDS YP_178434.1 57237421 3231177 complement(370282..373404) 1 NC_003912.7 identified by similarity to GP:18496807; match to protein family HMM PF00873; match to protein family HMM TIGR00915; RND efflux system, inner membrane transporter CmeB 373404 cmeB 3231177 cmeB Campylobacter jejuni RM1221 RND efflux system, inner membrane transporter CmeB YP_178434.1 370282 R 195099 CDS YP_178435.1 57237422 3231178 complement(373404..374507) 1 NC_003912.7 identified by similarity to SP:P31223; similarity to GB:AAL74244.1; match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND efflux system, membrane fusion protein CmeA 374507 cmeA 3231178 cmeA Campylobacter jejuni RM1221 RND efflux system, membrane fusion protein CmeA YP_178435.1 373404 R 195099 CDS YP_178436.1 57237423 3231179 complement(374601..375233) 1 NC_003912.7 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 375233 3231179 CJE0417 Campylobacter jejuni RM1221 TetR family transcriptional regulator YP_178436.1 374601 R 195099 CDS YP_178437.1 57237424 3231180 complement(375220..376596) 1 NC_003912.7 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding domain-containing protein 376596 3231180 CJE0418 Campylobacter jejuni RM1221 iron-sulfur cluster-binding domain-containing protein YP_178437.1 375220 R 195099 CDS YP_178438.1 57237425 3231181 376756..376968 1 NC_003912.7 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 376968 rpsU 3231181 rpsU Campylobacter jejuni RM1221 30S ribosomal protein S21 YP_178438.1 376756 D 195099 CDS YP_178439.1 57237426 3231182 377088..377693 1 NC_003912.7 identified by similarity to GP:12228587; hypothetical protein 377693 3231182 CJE0420 Campylobacter jejuni RM1221 hypothetical protein YP_178439.1 377088 D 195099 CDS YP_178440.1 57237427 3231183 377703..378872 1 NC_003912.7 identified by match to protein family HMM PF03738; glutathionylspermidine synthase 378872 3231183 CJE0421 Campylobacter jejuni RM1221 glutathionylspermidine synthase YP_178440.1 377703 D 195099 CDS YP_178441.1 57237428 3231184 378875..379810 1 NC_003912.7 Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 379810 3231184 CJE0422 Campylobacter jejuni RM1221 2-hydroxyacid dehydrogenase YP_178441.1 378875 D 195099 CDS YP_178442.1 57237429 3231185 379800..380291 1 NC_003912.7 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 380291 3231185 CJE0423 Campylobacter jejuni RM1221 nucleotide-binding protein YP_178442.1 379800 D 195099 CDS YP_178443.1 57237430 3231186 380300..380776 1 NC_003912.7 lipoprotein 380776 3231186 CJE0424 Campylobacter jejuni RM1221 lipoprotein YP_178443.1 380300 D 195099 CDS YP_178444.1 57237431 3231187 380787..381611 1 NC_003912.7 hypothetical protein 381611 3231187 CJE0425 Campylobacter jejuni RM1221 hypothetical protein YP_178444.1 380787 D 195099 CDS YP_178445.1 57237432 3231188 381611..383323 1 NC_003912.7 identified by match to protein family HMM PF00004; ATPase, AAA family protein 383323 3231188 CJE0426 Campylobacter jejuni RM1221 ATPase, AAA family protein YP_178445.1 381611 D 195099 CDS YP_178446.1 57237433 3231189 complement(383288..383860) 1 NC_003912.7 identified by match to protein family HMM PF05252; hypothetical protein 383860 3231189 CJE0427 Campylobacter jejuni RM1221 hypothetical protein YP_178446.1 383288 R 195099 CDS YP_178447.1 57237434 3231190 complement(383860..384753) 1 NC_003912.7 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 384753 3231190 CJE0428 Campylobacter jejuni RM1221 sulfite oxidase subunit YedY YP_178447.1 383860 R 195099 CDS YP_178448.1 57237435 3231191 complement(384809..385609) 1 NC_003912.7 hypothetical protein 385609 3231191 CJE0429 Campylobacter jejuni RM1221 hypothetical protein YP_178448.1 384809 R 195099 CDS YP_178449.1 57237436 3231192 complement(385591..386430) 1 NC_003912.7 OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 386430 pyrF 3231192 pyrF Campylobacter jejuni RM1221 orotidine 5'-phosphate decarboxylase YP_178449.1 385591 R 195099 CDS YP_178450.1 57237437 3231193 complement(386427..386825) 1 NC_003912.7 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 386825 nusB 3231193 nusB Campylobacter jejuni RM1221 transcription antitermination protein NusB YP_178450.1 386427 R 195099 CDS YP_178451.1 57237438 3231194 complement(386825..387289) 1 NC_003912.7 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 387289 ribH 3231194 ribH Campylobacter jejuni RM1221 6,7-dimethyl-8-ribityllumazine synthase YP_178451.1 386825 R 195099 CDS YP_178452.1 57237439 3231195 complement(387286..388101) 1 NC_003912.7 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 388101 kdsA 3231195 kdsA Campylobacter jejuni RM1221 2-dehydro-3-deoxyphosphooctonate aldolase YP_178452.1 387286 R 195099 CDS YP_178453.1 57237440 3231196 complement(388098..389030) 1 NC_003912.7 identified by similarity to SP:Q9ZJZ2; match to protein family HMM PF00892; integral membrane protein 389030 3231196 CJE0434 Campylobacter jejuni RM1221 integral membrane protein YP_178453.1 388098 R 195099 CDS YP_178454.1 57237441 3231197 389132..390514 1 NC_003912.7 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 390514 engA 3231197 engA Campylobacter jejuni RM1221 GTP-binding protein EngA YP_178454.1 389132 D 195099 CDS YP_178455.1 57237442 3231198 390501..390998 1 NC_003912.7 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 390998 aroK 3231198 aroK Campylobacter jejuni RM1221 shikimate kinase YP_178455.1 390501 D 195099 CDS YP_178456.1 57237443 3231199 390995..391954 1 NC_003912.7 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 391954 trpS 3231199 trpS Campylobacter jejuni RM1221 tryptophanyl-tRNA synthetase YP_178456.1 390995 D 195099 CDS YP_178457.1 57237444 3231200 391965..393200 1 NC_003912.7 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 393200 serS 3231200 serS Campylobacter jejuni RM1221 seryl-tRNA synthetase YP_178457.1 391965 D 195099 CDS YP_178458.1 57237445 3231201 393210..395672 1 NC_003912.7 identified by match to protein family HMM PF00515; hypothetical protein 395672 3231201 CJE0439 Campylobacter jejuni RM1221 hypothetical protein YP_178458.1 393210 D 195099 CDS YP_178459.1 57237446 3231202 complement(395703..396338) 1 NC_003912.7 identified by similarity to GP:25989709; hypothetical protein 396338 3231202 CJE0440 Campylobacter jejuni RM1221 hypothetical protein YP_178459.1 395703 R 195099 CDS YP_178460.1 57237447 3231203 complement(396436..397878) 1 NC_003912.7 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 397878 pyk 3231203 pyk Campylobacter jejuni RM1221 pyruvate kinase YP_178460.1 396436 R 195099 CDS YP_178461.1 57237448 3231204 complement(397927..399273) 1 NC_003912.7 malate:quinone oxidoreductase 399273 3231204 CJE0442 Campylobacter jejuni RM1221 malate:quinone oxidoreductase YP_178461.1 397927 R 195099 CDS YP_178462.1 57237449 3231205 complement(399391..400020) 1 NC_003912.7 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 400020 3231205 CJE0443 Campylobacter jejuni RM1221 pantothenate kinase YP_178462.1 399391 R 195099 CDS YP_178463.1 57237450 3231206 complement(400007..400297) 1 NC_003912.7 tram-like protein 400297 3231206 CJE0444 Campylobacter jejuni RM1221 tram-like protein YP_178463.1 400007 R 195099 CDS YP_178464.1 57237451 3231207 complement(400294..401292) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00790; lipoprotein 401292 3231207 CJE0445 Campylobacter jejuni RM1221 lipoprotein YP_178464.1 400294 R 195099 CDS YP_178465.1 57237452 3231208 complement(401289..401867) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00791; hypothetical protein 401867 3231208 CJE0446 Campylobacter jejuni RM1221 hypothetical protein YP_178465.1 401289 R 195099 CDS YP_178466.1 57237453 3231209 402011..402295 1 NC_003912.7 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 402295 gatC 3231209 gatC Campylobacter jejuni RM1221 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_178466.1 402011 D 195099 CDS YP_178467.1 57237454 3231210 402363..402926 1 NC_003912.7 identified by match to protein family HMM PF02674; cvpA family protein 402926 3231210 CJE0448 Campylobacter jejuni RM1221 cvpA family protein YP_178467.1 402363 D 195099 CDS YP_178468.1 57237455 3231211 402928..403401 1 NC_003912.7 identified by similarity to SP:P06975; match to protein family HMM PF01475; ferric uptake regulation protein 403401 fur 3231211 fur Campylobacter jejuni RM1221 ferric uptake regulation protein YP_178468.1 402928 D 195099 CDS YP_178469.1 57237456 3231212 403402..404907 1 NC_003912.7 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 404907 lysS 3231212 lysS Campylobacter jejuni RM1221 lysyl-tRNA synthetase YP_178469.1 403402 D 195099 CDS YP_178470.1 57237457 3231213 404904..406148 1 NC_003912.7 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 406148 glyA 3231213 glyA Campylobacter jejuni RM1221 serine hydroxymethyltransferase YP_178470.1 404904 D 195099 CDS YP_178471.1 57237458 3231214 406145..406690 1 NC_003912.7 identified by similarity to OMNI:HP0184; hypothetical protein 406690 3231214 CJE0452 Campylobacter jejuni RM1221 hypothetical protein YP_178471.1 406145 D 195099 CDS YP_178472.1 57237459 3231215 406704..407540 1 NC_003912.7 identified by similarity to GP:12228583; hypothetical protein 407540 3231215 CJE0453 Campylobacter jejuni RM1221 hypothetical protein YP_178472.1 406704 D 195099 CDS YP_178473.1 57237460 3231216 407537..408325 1 NC_003912.7 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 408325 aroE 3231216 aroE Campylobacter jejuni RM1221 shikimate 5-dehydrogenase YP_178473.1 407537 D 195099 CDS YP_178474.1 57237461 3231217 complement(408400..409299) 1 NC_003912.7 lipoprotein 409299 3231217 CJE0455 Campylobacter jejuni RM1221 lipoprotein YP_178474.1 408400 R 195099 CDS YP_178475.1 57237462 3231218 409389..410204 1 NC_003912.7 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 410204 lgt 3231218 lgt Campylobacter jejuni RM1221 prolipoprotein diacylglyceryl transferase YP_178475.1 409389 D 195099 CDS YP_178476.1 57237463 3231219 410273..411055 1 NC_003912.7 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 411055 frdC 3231219 frdC Campylobacter jejuni RM1221 fumarate reductase cytochrome b-556 subunit YP_178476.1 410273 D 195099 CDS YP_178477.1 57237464 3231220 411039..413030 1 NC_003912.7 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 413030 frdA 3231220 frdA Campylobacter jejuni RM1221 fumarate reductase flavoprotein subunit YP_178477.1 411039 D 195099 CDS YP_178478.1 57237465 3231221 413023..413748 1 NC_003912.7 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 413748 frdB 3231221 frdB Campylobacter jejuni RM1221 fumarate reductase iron-sulfur subunit YP_178478.1 413023 D 195099 CDS YP_178479.1 57237466 3231222 413776..415962 1 NC_003912.7 GTP-binding protein 415962 3231222 CJE0460 Campylobacter jejuni RM1221 GTP-binding protein YP_178479.1 413776 D 195099 CDS YP_178480.1 57237467 3231223 416072..417781 1 NC_003912.7 GTP-binding protein 417781 3231223 CJE0461 Campylobacter jejuni RM1221 GTP-binding protein YP_178480.1 416072 D 195099 CDS YP_178481.1 57237468 3231224 417781..418485 1 NC_003912.7 identified by similarity to GP:17864805; hypothetical protein 418485 3231224 CJE0462 Campylobacter jejuni RM1221 hypothetical protein YP_178481.1 417781 D 195099 CDS YP_178482.1 57237469 3231225 418621..419349 1 NC_003912.7 identified by similarity to OMNI:NTL03PA02264; hypothetical protein 419349 3231225 CJE0463 Campylobacter jejuni RM1221 hypothetical protein YP_178482.1 418621 D 195099 CDS YP_178483.1 57237470 3231226 419351..421072 1 NC_003912.7 oxidoreductase 421072 3231226 CJE0464 Campylobacter jejuni RM1221 oxidoreductase YP_178483.1 419351 D 195099 CDS YP_178484.1 57237471 3231227 complement(421045..421155) 1 NC_003912.7 hypothetical protein 421155 3231227 CJE0465 Campylobacter jejuni RM1221 hypothetical protein YP_178484.1 421045 R 195099 CDS YP_178485.1 57237472 3231228 421278..421973 1 NC_003912.7 hypothetical protein 421973 3231228 CJE0466 Campylobacter jejuni RM1221 hypothetical protein YP_178485.1 421278 D 195099 CDS YP_178486.1 57237473 3231229 complement(422080..422784) 1 NC_003912.7 hypothetical protein 422784 3231229 CJE0467 Campylobacter jejuni RM1221 hypothetical protein YP_178486.1 422080 R 195099 CDS YP_178487.1 57237474 3231230 422892..423254 1 NC_003912.7 identified by match to protein family HMM PF01230; HIT family protein 423254 3231230 CJE0468 Campylobacter jejuni RM1221 HIT family protein YP_178487.1 422892 D 195099 CDS YP_178488.1 57237475 3231231 423328..423900 1 NC_003912.7 identified by similarity to OMNI:HP1286; match to protein family HMM PF04264; hypothetical protein 423900 3231231 CJE0469 Campylobacter jejuni RM1221 hypothetical protein YP_178488.1 423328 D 195099 CDS YP_178489.1 57237476 3231232 complement(423905..424861) 1 NC_003912.7 identified by similarity to OMNI:VCA0560; hypothetical protein 424861 3231232 CJE0470 Campylobacter jejuni RM1221 hypothetical protein YP_178489.1 423905 R 195099 CDS YP_178490.1 57237477 3231233 complement(424922..425131) 1 NC_003912.7 hypothetical protein 425131 3231233 CJE0471 Campylobacter jejuni RM1221 hypothetical protein YP_178490.1 424922 R 195099 CDS YP_178491.1 57237478 3231234 425298..425717 1 NC_003912.7 hypothetical protein 425717 3231234 CJE0472 Campylobacter jejuni RM1221 hypothetical protein YP_178491.1 425298 D 195099 CDS YP_178492.1 57237479 3231235 425760..426020 1 NC_003912.7 hypothetical protein 426020 3231235 CJE0473 Campylobacter jejuni RM1221 hypothetical protein YP_178492.1 425760 D 195099 CDS YP_178493.1 57237480 3231236 426020..426553 1 NC_003912.7 lipoprotein 426553 3231236 CJE0474 Campylobacter jejuni RM1221 lipoprotein YP_178493.1 426020 D 195099 CDS YP_178494.1 57237481 3231237 426676..428253 1 NC_003912.7 identified by similarity to SP:P75790; match to protein family HMM PF00005; ABC transporter ATP-binding protein 428253 3231237 CJE0475 Campylobacter jejuni RM1221 ABC transporter ATP-binding protein YP_178494.1 426676 D 195099 CDS YP_178495.1 57237482 3231238 428246..428578 1 NC_003912.7 hypothetical protein 428578 3231238 CJE0476 Campylobacter jejuni RM1221 hypothetical protein YP_178495.1 428246 D 195099 CDS YP_178496.1 57237483 3231239 428655..429038 1 NC_003912.7 identified by similarity to GP:552054; hypothetical protein 429038 3231239 CJE0477 Campylobacter jejuni RM1221 hypothetical protein YP_178496.1 428655 D 195099 CDS YP_178497.1 57237484 3231240 complement(429082..429666) 1 NC_003912.7 identified by similarity to OMNI:HP1485; match to protein family HMM PF01205; hypothetical protein 429666 3231240 CJE0478 Campylobacter jejuni RM1221 hypothetical protein YP_178497.1 429082 R 195099 CDS YP_178498.1 57238718 3232506 429669..429782 1 NC_003912.7 hypothetical protein 429782 3232506 CJE0479 Campylobacter jejuni RM1221 hypothetical protein YP_178498.1 429669 D 195099 CDS YP_178499.1 57237485 3231241 429793..431019 1 NC_003912.7 identified by similarity to OMNI:NTL01HP01148; hypothetical protein 431019 3231241 CJE0480 Campylobacter jejuni RM1221 hypothetical protein YP_178499.1 429793 D 195099 CDS YP_178500.1 57237486 3231242 431012..431749 1 NC_003912.7 hypothetical protein 431749 3231242 CJE0481 Campylobacter jejuni RM1221 hypothetical protein YP_178500.1 431012 D 195099 CDS YP_178501.1 57237487 3231243 complement(438113..439321) 1 NC_003912.7 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 439321 murD 3231243 murD Campylobacter jejuni RM1221 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_178501.1 438113 R 195099 CDS YP_178502.1 57237488 3231244 complement(439321..440382) 1 NC_003912.7 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 440382 mraY 3231244 mraY Campylobacter jejuni RM1221 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_178502.1 439321 R 195099 CDS YP_178503.1 57237489 3231245 440462..441940 1 NC_003912.7 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 441940 pgm 3231245 pgm Campylobacter jejuni RM1221 phosphoglyceromutase YP_178503.1 440462 D 195099 CDS YP_178504.1 57237490 3231246 442012..442755 1 NC_003912.7 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 442755 fabG 3231246 fabG Campylobacter jejuni RM1221 3-ketoacyl-ACP reductase YP_178504.1 442012 D 195099 CDS YP_178505.1 57237491 3231247 442765..443172 1 NC_003912.7 identified by similarity to OMNI:NTL01FN0973; hypothetical protein 443172 3231247 CJE0486 Campylobacter jejuni RM1221 hypothetical protein YP_178505.1 442765 D 195099 CDS YP_178506.1 57237492 3231248 443391..443486 1 NC_003912.7 hypothetical protein 443486 3231248 CJE0487 Campylobacter jejuni RM1221 hypothetical protein YP_178506.1 443391 D 195099 CDS YP_178507.1 57237493 3231249 443615..445345 1 NC_003912.7 identified by match to protein family HMM PF00890; match to protein family HMM PF02910; succinate dehydrogenase, flavoprotein subunit 445345 sdhA 3231249 sdhA Campylobacter jejuni RM1221 succinate dehydrogenase, flavoprotein subunit YP_178507.1 443615 D 195099 CDS YP_178508.1 57237494 3231250 445342..446307 1 NC_003912.7 identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384; succinate dehydrogenase, iron-sulfur protein subunit 446307 sdhB 3231250 sdhB Campylobacter jejuni RM1221 succinate dehydrogenase, iron-sulfur protein subunit YP_178508.1 445342 D 195099 CDS YP_178509.1 57237495 3231251 446311..447168 1 NC_003912.7 identified by similarity to GP:3378542; match to protein family HMM PF02754; succinate dehydrogenase, C subunit 447168 sdhC 3231251 sdhC Campylobacter jejuni RM1221 succinate dehydrogenase, C subunit YP_178509.1 446311 D 195099 CDS YP_178510.1 57237496 3231252 complement(447192..447857) 1 NC_003912.7 identified by match to protein family HMM PF03070; TenA/Thi-4 family protein 447857 3231252 CJE0491 Campylobacter jejuni RM1221 TenA/Thi-4 family protein YP_178510.1 447192 R 195099 CDS YP_178511.1 57237497 3231253 447835..447951 1 NC_003912.7 hypothetical protein 447951 3231253 CJE0492 Campylobacter jejuni RM1221 hypothetical protein YP_178511.1 447835 D 195099 CDS YP_178512.1 57237498 3231254 447970..448203 1 NC_003912.7 carries the fatty acid chain in fatty acid biosynthesis; ACP 448203 acpP 3231254 acpP Campylobacter jejuni RM1221 ACP YP_178512.1 447970 D 195099 CDS YP_178513.1 57237499 3231255 448230..449444 1 NC_003912.7 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase II 449444 fabF 3231255 fabF Campylobacter jejuni RM1221 3-oxoacyl-ACP synthase II YP_178513.1 448230 D 195099 CDS YP_178514.1 57237500 3231256 449446..450384 1 NC_003912.7 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 450384 accA 3231256 accA Campylobacter jejuni RM1221 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_178514.1 449446 D 195099 CDS YP_178515.1 57237501 3231258 452673..453269 1 NC_003912.7 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; NUDIX domain-containing protein 453269 3231258 CJE0497 Campylobacter jejuni RM1221 NUDIX domain-containing protein YP_178515.1 452673 D 195099 CDS YP_178516.1 57237502 3231259 complement(453301..454398) 1 NC_003912.7 identified by similarity to GP:1840146; match to protein family HMM PF00015; methyl-accepting chemotaxis protein 454398 3231259 CJE0498 Campylobacter jejuni RM1221 methyl-accepting chemotaxis protein YP_178516.1 453301 R 195099 CDS YP_178517.1 57237503 3231260 complement(454408..454623) 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ00422; match to protein family HMM PF04325; hypothetical protein 454623 3231260 CJE0499 Campylobacter jejuni RM1221 hypothetical protein YP_178517.1 454408 R 195099 CDS YP_178518.1 57237504 3231261 complement(454808..455002) 1 NC_003912.7 required for 70S ribosome assembly; 50S ribosomal protein L28 455002 rpmB 3231261 rpmB Campylobacter jejuni RM1221 50S ribosomal protein L28 YP_178518.1 454808 R 195099 CDS YP_178519.1 57237505 3231262 455142..455789 1 NC_003912.7 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 455789 rpe 3231262 rpe Campylobacter jejuni RM1221 ribulose-phosphate 3-epimerase YP_178519.1 455142 D 195099 CDS YP_178520.1 57237506 3231263 455855..456556 1 NC_003912.7 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 456556 3231263 CJE0502 Campylobacter jejuni RM1221 DNA polymerase III subunit epsilon YP_178520.1 455855 D 195099 CDS YP_178521.1 57237507 3231264 456731..458023 1 NC_003912.7 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 458023 thiC 3231264 thiC Campylobacter jejuni RM1221 thiamine biosynthesis protein ThiC YP_178521.1 456731 D 195099 CDS YP_178522.1 57237508 3231265 complement(458015..458533) 1 NC_003912.7 hypothetical protein 458533 3231265 CJE0504 Campylobacter jejuni RM1221 hypothetical protein YP_178522.1 458015 R 195099 CDS YP_178523.1 57237509 3231266 complement(458523..459050) 1 NC_003912.7 identified by similarity to GP:12228461; hypothetical protein 459050 3231266 CJE0505 Campylobacter jejuni RM1221 hypothetical protein YP_178523.1 458523 R 195099 CDS YP_178524.1 57237510 3231267 complement(459047..460006) 1 NC_003912.7 hypothetical protein 460006 3231267 CJE0506 Campylobacter jejuni RM1221 hypothetical protein YP_178524.1 459047 R 195099 CDS YP_178525.1 57237511 3231268 complement(460008..460658) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00254; match to protein family HMM PF04028; hypothetical protein 460658 3231268 CJE0507 Campylobacter jejuni RM1221 hypothetical protein YP_178525.1 460008 R 195099 CDS YP_178526.1 57237512 3231269 complement(460621..461922) 1 NC_003912.7 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 461922 miaB 3231269 miaB Campylobacter jejuni RM1221 (dimethylallyl)adenosine tRNA methylthiotransferase YP_178526.1 460621 R 195099 CDS YP_178527.1 57237513 3231270 complement(461919..462161) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00252; hypothetical protein 462161 3231270 CJE0509 Campylobacter jejuni RM1221 hypothetical protein YP_178527.1 461919 R 195099 CDS YP_178528.1 57237514 3231271 462289..463377 1 NC_003912.7 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 463377 nusA 3231271 nusA Campylobacter jejuni RM1221 transcription elongation factor NusA YP_178528.1 462289 D 195099 CDS YP_178529.1 57237515 3231272 complement(463393..464580) 1 NC_003912.7 identified by similarity to GP:2613096; similarity to OMNI:CT0102; match to protein family HMM PF04332; transporter 464580 3231272 CJE0511 Campylobacter jejuni RM1221 transporter YP_178529.1 463393 R 195099 CDS YP_178530.1 57237516 3231273 464655..465701 1 NC_003912.7 identified by similarity to GB:AAP77588.1; match to protein family HMM PF04055; match to protein family HMM TIGR00423; hypothetical protein 465701 3231273 CJE0512 Campylobacter jejuni RM1221 hypothetical protein YP_178530.1 464655 D 195099 CDS YP_178531.1 57237517 3231274 465701..466921 1 NC_003912.7 identified by match to protein family HMM PF05193; peptidase 466921 3231274 CJE0513 Campylobacter jejuni RM1221 peptidase YP_178531.1 465701 D 195099 CDS YP_178532.1 57237518 3231275 466911..468734 1 NC_003912.7 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 468734 recG 3231275 recG Campylobacter jejuni RM1221 ATP-dependent DNA helicase RecG YP_178532.1 466911 D 195099 CDS YP_178533.1 57237519 3231276 complement(468731..469114) 1 NC_003912.7 identified by similarity to GB:AAP76761.1; hypothetical protein 469114 3231276 CJE0515 Campylobacter jejuni RM1221 hypothetical protein YP_178533.1 468731 R 195099 CDS YP_178534.1 57237520 3231277 469210..469806 1 NC_003912.7 identified by similarity to GP:4585799; match to protein family HMM PF00027; transcriptional regulator 469806 3231277 CJE0516 Campylobacter jejuni RM1221 transcriptional regulator YP_178534.1 469210 D 195099 CDS YP_178535.1 57237521 3231278 469822..470523 1 NC_003912.7 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 470523 3231278 CJE0517 Campylobacter jejuni RM1221 His/Glu/Gln/Arg/opine ABC transporter permease YP_178535.1 469822 D 195099 CDS YP_178536.1 57237522 3231279 470516..471172 1 NC_003912.7 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 471172 3231279 CJE0518 Campylobacter jejuni RM1221 His/Glu/Gln/Arg/opine ABC transporter permease YP_178536.1 470516 D 195099 CDS YP_178537.1 57237523 3231280 471174..471911 1 NC_003912.7 identified by similarity to SP:P48243; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 471911 3231280 CJE0519 Campylobacter jejuni RM1221 amino acid ABC transporter ATP-binding protein YP_178537.1 471174 D 195099 CDS YP_178538.1 57237524 3231281 472565..473764 1 NC_003912.7 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 473764 tuf 3231281 tuf Campylobacter jejuni RM1221 elongation factor Tu YP_178538.1 472565 D 195099 CDS YP_178539.1 57237525 3231282 473817..473975 1 NC_003912.7 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 473975 rpmG 3231282 rpmG Campylobacter jejuni RM1221 50S ribosomal protein L33 YP_178539.1 473817 D 195099 CDS YP_178540.1 57237526 3231283 474082..474261 1 NC_003912.7 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 474261 secE 3231283 secE Campylobacter jejuni RM1221 preprotein translocase subunit SecE YP_178540.1 474082 D 195099 CDS YP_178541.1 57237527 3231284 474271..474804 1 NC_003912.7 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 474804 nusG 3231284 nusG Campylobacter jejuni RM1221 transcription antitermination protein NusG YP_178541.1 474271 D 195099 CDS YP_178542.1 57237528 3231285 474830..475255 1 NC_003912.7 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 475255 rplK 3231285 rplK Campylobacter jejuni RM1221 50S ribosomal protein L11 YP_178542.1 474830 D 195099 CDS YP_178543.1 57237529 3231286 475310..476011 1 NC_003912.7 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 476011 rplA 3231286 rplA Campylobacter jejuni RM1221 50S ribosomal protein L1 YP_178543.1 475310 D 195099 CDS YP_178544.1 57237530 3231287 476163..476642 1 NC_003912.7 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 476642 rplJ 3231287 rplJ Campylobacter jejuni RM1221 50S ribosomal protein L10 YP_178544.1 476163 D 195099 CDS YP_178545.1 57237531 3231288 476663..477040 1 NC_003912.7 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 477040 rplL 3231288 rplL Campylobacter jejuni RM1221 50S ribosomal protein L7/L12 YP_178545.1 476663 D 195099 CDS YP_178546.1 57237532 3231289 477149..481285 1 NC_003912.7 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 481285 rpoB 3231289 rpoB Campylobacter jejuni RM1221 DNA-directed RNA polymerase subunit beta YP_178546.1 477149 D 195099 CDS YP_178547.1 57237533 3231290 481278..485831 1 NC_003912.7 identified by similarity to SP:O83270; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR01369; match to protein family HMM TIGR01612; DNA-directed RNA polymerase, beta' subunit 485831 rpoC 3231290 rpoC Campylobacter jejuni RM1221 DNA-directed RNA polymerase, beta' subunit YP_178547.1 481278 D 195099 CDS YP_178548.1 57237534 3231291 complement(485862..486623) 1 NC_003912.7 identified by match to protein family HMM PF01614; IclR family transcriptional regulator 486623 3231291 CJE0530 Campylobacter jejuni RM1221 IclR family transcriptional regulator YP_178548.1 485862 R 195099 CDS YP_178549.1 57237535 3231292 complement(486631..486771) 1 NC_003912.7 hypothetical protein 486771 3231292 CJE0531 Campylobacter jejuni RM1221 hypothetical protein YP_178549.1 486631 R 195099 CDS YP_178550.1 57237536 3231293 486853..487761 1 NC_003912.7 identified by similarity to SP:Q04796; match to protein family HMM PF00701; dihydrodipicolinate synthase 487761 3231293 CJE0532 Campylobacter jejuni RM1221 dihydrodipicolinate synthase YP_178550.1 486853 D 195099 CDS YP_178551.1 57237537 3231295 489202..490488 1 NC_003912.7 identified by similarity to SP:Q44470; match to protein family HMM PF00083; tartrate transporter 490488 3231295 CJE0534 Campylobacter jejuni RM1221 tartrate transporter YP_178551.1 489202 D 195099 CDS YP_178552.1 57237538 3231296 490489..491277 1 NC_003912.7 identified by match to protein family HMM PF00106; short chain dehydrogenase 491277 3231296 CJE0535 Campylobacter jejuni RM1221 short chain dehydrogenase YP_178552.1 490489 D 195099 CDS YP_178553.1 57237539 3231297 491288..492544 1 NC_003912.7 identified by match to protein family HMM PF00083; match to protein family HMM TIGR00885; L-fucose permease 492544 fucP 3231297 fucP Campylobacter jejuni RM1221 L-fucose permease YP_178553.1 491288 D 195099 CDS YP_178554.1 57237540 3231298 492528..493298 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ00461; hypothetical protein 493298 3231298 CJE0537 Campylobacter jejuni RM1221 hypothetical protein YP_178554.1 492528 D 195099 CDS YP_178555.1 57237541 3231299 493299..493616 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ00462; match to protein family HMM PF05336; hypothetical protein 493616 3231299 CJE0538 Campylobacter jejuni RM1221 hypothetical protein YP_178555.1 493299 D 195099 CDS YP_178556.1 57237542 3231300 493630..495069 1 NC_003912.7 NAD-linked; aldehyde dehydrogenase A 495069 aldA 3231300 aldA Campylobacter jejuni RM1221 aldehyde dehydrogenase A YP_178556.1 493630 D 195099 CDS YP_178557.1 57237543 3231301 495397..495783 1 NC_003912.7 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 495783 rpsL 3231301 rpsL Campylobacter jejuni RM1221 30S ribosomal protein S12 YP_178557.1 495397 D 195099 CDS YP_178558.1 57237544 3231302 495853..496323 1 NC_003912.7 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 496323 rpsG 3231302 rpsG Campylobacter jejuni RM1221 30S ribosomal protein S7 YP_178558.1 495853 D 195099 CDS YP_178559.1 57237545 3231303 496336..498411 1 NC_003912.7 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 498411 fusA 3231303 fusA Campylobacter jejuni RM1221 elongation factor G YP_178559.1 496336 D 195099 CDS YP_178560.1 57237546 3231304 498700..499902 1 NC_003912.7 identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 499902 3231304 CJE0544 Campylobacter jejuni RM1221 phage integrase family site specific recombinase YP_178560.1 498700 D 195099 CDS YP_178561.1 57237547 3231305 complement(499899..500069) 1 NC_003912.7 identified by match to protein family HMM TIGR01764; DNA binding domain-containing protein 500069 3231305 CJE0545 Campylobacter jejuni RM1221 DNA binding domain-containing protein YP_178561.1 499899 R 195099 CDS YP_178562.1 57237548 3231306 complement(500062..500604) 1 NC_003912.7 identified by match to protein family HMM PF00805; hypothetical protein 500604 3231306 CJE0546 Campylobacter jejuni RM1221 hypothetical protein YP_178562.1 500062 R 195099 CDS YP_178563.1 57237549 3231307 complement(500614..500805) 1 NC_003912.7 hypothetical protein 500805 3231307 CJE0547 Campylobacter jejuni RM1221 hypothetical protein YP_178563.1 500614 R 195099 CDS YP_178564.1 57237550 3231308 complement(501182..501799) 1 NC_003912.7 identified by similarity to GB:AAM53132.1; phage anti-repressor protein 501799 3231308 CJE0548 Campylobacter jejuni RM1221 phage anti-repressor protein YP_178564.1 501182 R 195099 CDS YP_178565.1 57237551 3231309 complement(501935..502330) 1 NC_003912.7 hypothetical protein 502330 3231309 CJE0549 Campylobacter jejuni RM1221 hypothetical protein YP_178565.1 501935 R 195099 CDS YP_178566.1 57237552 3231310 complement(502374..503126) 1 NC_003912.7 identified by similarity to GB:CAA65779.1; match to protein family HMM PF01555; site-specific DNA-methyltransferase 503126 3231310 CJE0550 Campylobacter jejuni RM1221 site-specific DNA-methyltransferase YP_178566.1 502374 R 195099 CDS YP_178567.1 57237553 3231311 complement(503107..503547) 1 NC_003912.7 identified by similarity to OMNI:NTL01LI2568; hypothetical protein 503547 3231311 CJE0551 Campylobacter jejuni RM1221 hypothetical protein YP_178567.1 503107 R 195099 CDS YP_178568.1 57237554 3231312 complement(503622..503732) 1 NC_003912.7 hypothetical protein 503732 3231312 CJE0552 Campylobacter jejuni RM1221 hypothetical protein YP_178568.1 503622 R 195099 CDS YP_178569.1 57237555 3231313 complement(503790..504053) 1 NC_003912.7 hypothetical protein 504053 3231313 CJE0553 Campylobacter jejuni RM1221 hypothetical protein YP_178569.1 503790 R 195099 CDS YP_178570.1 57237556 3231314 complement(504034..504729) 1 NC_003912.7 hypothetical protein 504729 3231314 CJE0554 Campylobacter jejuni RM1221 hypothetical protein YP_178570.1 504034 R 195099 CDS YP_178571.1 57237557 3231315 complement(504729..505466) 1 NC_003912.7 hypothetical protein 505466 3231315 CJE0555 Campylobacter jejuni RM1221 hypothetical protein YP_178571.1 504729 R 195099 CDS YP_178572.1 57237558 3231316 complement(505468..506322) 1 NC_003912.7 hypothetical protein 506322 3231316 CJE0556 Campylobacter jejuni RM1221 hypothetical protein YP_178572.1 505468 R 195099 CDS YP_178573.1 57237559 3231317 complement(506324..506551) 1 NC_003912.7 identified by similarity to GP:9944309; hypothetical protein 506551 3231317 CJE0557 Campylobacter jejuni RM1221 hypothetical protein YP_178573.1 506324 R 195099 CDS YP_178574.1 57237560 3231318 complement(506542..506799) 1 NC_003912.7 hypothetical protein 506799 3231318 CJE0558 Campylobacter jejuni RM1221 hypothetical protein YP_178574.1 506542 R 195099 CDS YP_178575.1 57237561 3231319 complement(506790..507059) 1 NC_003912.7 hypothetical protein 507059 3231319 CJE0559 Campylobacter jejuni RM1221 hypothetical protein YP_178575.1 506790 R 195099 CDS YP_178576.1 57237562 3231320 complement(507286..507393) 1 NC_003912.7 hypothetical protein 507393 3231320 CJE0560 Campylobacter jejuni RM1221 hypothetical protein YP_178576.1 507286 R 195099 CDS YP_178577.1 57237563 3231321 complement(507621..507893) 1 NC_003912.7 hypothetical protein 507893 3231321 CJE0561 Campylobacter jejuni RM1221 hypothetical protein YP_178577.1 507621 R 195099 CDS YP_178578.1 57237564 3231322 508148..508843 1 NC_003912.7 identified by similarity to OMNI:CT1793; hypothetical protein 508843 3231322 CJE0562 Campylobacter jejuni RM1221 hypothetical protein YP_178578.1 508148 D 195099 CDS YP_178579.1 57237565 3231323 complement(508862..509233) 1 NC_003912.7 hypothetical protein 509233 3231323 CJE0563 Campylobacter jejuni RM1221 hypothetical protein YP_178579.1 508862 R 195099 CDS YP_178580.1 57237566 3231324 complement(509223..509756) 1 NC_003912.7 hypothetical protein 509756 3231324 CJE0564 Campylobacter jejuni RM1221 hypothetical protein YP_178580.1 509223 R 195099 CDS YP_178581.1 57237567 3231325 complement(509753..510418) 1 NC_003912.7 hypothetical protein 510418 3231325 CJE0565 Campylobacter jejuni RM1221 hypothetical protein YP_178581.1 509753 R 195099 CDS YP_178582.1 57237568 3231326 complement(510498..511151) 1 NC_003912.7 identified by similarity to GP:27359896; match to protein family HMM PF01223; DNA/RNA non-specific endonuclease 511151 3231326 CJE0566 Campylobacter jejuni RM1221 DNA/RNA non-specific endonuclease YP_178582.1 510498 R 195099 CDS YP_178583.1 57237569 3231327 complement(511157..511849) 1 NC_003912.7 hypothetical protein 511849 3231327 CJE0567 Campylobacter jejuni RM1221 hypothetical protein YP_178583.1 511157 R 195099 CDS YP_178584.1 57237570 3231328 complement(511857..512645) 1 NC_003912.7 identified by similarity to GP:29337437; hypothetical protein 512645 3231328 CJE0568 Campylobacter jejuni RM1221 hypothetical protein YP_178584.1 511857 R 195099 CDS YP_178585.1 57237571 3231329 complement(512642..513376) 1 NC_003912.7 identified by similarity to GB:AAN53719.1; match to protein family HMM PF00717; phage repressor protein 513376 3231329 CJE0569 Campylobacter jejuni RM1221 phage repressor protein YP_178585.1 512642 R 195099 CDS YP_178586.1 57237572 3231330 513488..513712 1 NC_003912.7 hypothetical protein 513712 3231330 CJE0570 Campylobacter jejuni RM1221 hypothetical protein YP_178586.1 513488 D 195099 CDS YP_178587.1 57237573 3231331 513709..514137 1 NC_003912.7 hypothetical protein 514137 3231331 CJE0571 Campylobacter jejuni RM1221 hypothetical protein YP_178587.1 513709 D 195099 CDS YP_178588.1 57237574 3231332 514134..514511 1 NC_003912.7 lipoprotein 514511 3231332 CJE0572 Campylobacter jejuni RM1221 lipoprotein YP_178588.1 514134 D 195099 CDS YP_178589.1 57237575 3231333 514508..515509 1 NC_003912.7 hypothetical protein 515509 3231333 CJE0573 Campylobacter jejuni RM1221 hypothetical protein YP_178589.1 514508 D 195099 CDS YP_178590.1 57237576 3231334 515520..516167 1 NC_003912.7 hypothetical protein 516167 3231334 CJE0574 Campylobacter jejuni RM1221 hypothetical protein YP_178590.1 515520 D 195099 CDS YP_178591.1 57237577 3231335 516185..516565 1 NC_003912.7 hypothetical protein 516565 3231335 CJE0575 Campylobacter jejuni RM1221 hypothetical protein YP_178591.1 516185 D 195099 CDS YP_178592.1 57237578 3231336 516565..516951 1 NC_003912.7 identified by similarity to SP:Q9T1T1; hypothetical protein 516951 3231336 CJE0576 Campylobacter jejuni RM1221 hypothetical protein YP_178592.1 516565 D 195099 CDS YP_178593.1 57237579 3231337 516948..518240 1 NC_003912.7 identified by similarity to SP:P27753; terminase B protein 518240 3231337 CJE0577 Campylobacter jejuni RM1221 terminase B protein YP_178593.1 516948 D 195099 CDS YP_178594.1 57237580 3231338 518230..518502 1 NC_003912.7 hypothetical protein 518502 3231338 CJE0578 Campylobacter jejuni RM1221 hypothetical protein YP_178594.1 518230 D 195099 CDS YP_178595.1 57237581 3231339 518483..520021 1 NC_003912.7 hypothetical protein 520021 3231339 CJE0579 Campylobacter jejuni RM1221 hypothetical protein YP_178595.1 518483 D 195099 CDS YP_178596.1 57237582 3231340 520014..520217 1 NC_003912.7 hypothetical protein 520217 3231340 CJE0580 Campylobacter jejuni RM1221 hypothetical protein YP_178596.1 520014 D 195099 CDS YP_178597.1 57237583 3231341 520207..520854 1 NC_003912.7 hypothetical protein 520854 3231341 CJE0581 Campylobacter jejuni RM1221 hypothetical protein YP_178597.1 520207 D 195099 CDS YP_178598.1 57237584 3231342 520865..521242 1 NC_003912.7 hypothetical protein 521242 3231342 CJE0582 Campylobacter jejuni RM1221 hypothetical protein YP_178598.1 520865 D 195099 CDS YP_178599.1 57237585 3231343 521507..522718 1 NC_003912.7 hypothetical protein 522718 3231343 CJE0583 Campylobacter jejuni RM1221 hypothetical protein YP_178599.1 521507 D 195099 CDS YP_178600.1 57237586 3231344 522718..526419 1 NC_003912.7 hypothetical protein 526419 3231344 CJE0584 Campylobacter jejuni RM1221 hypothetical protein YP_178600.1 522718 D 195099 CDS YP_178601.1 57237587 3231345 complement(526698..527543) 1 NC_003912.7 hypothetical protein 527543 3231345 CJE0585 Campylobacter jejuni RM1221 hypothetical protein YP_178601.1 526698 R 195099 CDS YP_178602.1 57237588 3231346 complement(527553..527759) 1 NC_003912.7 hypothetical protein 527759 3231346 CJE0586 Campylobacter jejuni RM1221 hypothetical protein YP_178602.1 527553 R 195099 CDS YP_178603.1 57237589 3231347 527979..529013 1 NC_003912.7 hypothetical protein 529013 3231347 CJE0587 Campylobacter jejuni RM1221 hypothetical protein YP_178603.1 527979 D 195099 CDS YP_178604.1 57237590 3231348 529013..529417 1 NC_003912.7 hypothetical protein 529417 3231348 CJE0588 Campylobacter jejuni RM1221 hypothetical protein YP_178604.1 529013 D 195099 CDS YP_178605.1 57237591 3231349 529395..529592 1 NC_003912.7 hypothetical protein 529592 3231349 CJE0589 Campylobacter jejuni RM1221 hypothetical protein YP_178605.1 529395 D 195099 CDS YP_178606.1 57237592 3231350 529595..532237 1 NC_003912.7 hypothetical protein 532237 3231350 CJE0590 Campylobacter jejuni RM1221 hypothetical protein YP_178606.1 529595 D 195099 CDS YP_178607.1 57237593 3231351 532338..532688 1 NC_003912.7 hypothetical protein 532688 3231351 CJE0591 Campylobacter jejuni RM1221 hypothetical protein YP_178607.1 532338 D 195099 CDS YP_178608.1 57237594 3231352 532701..533336 1 NC_003912.7 hypothetical protein 533336 3231352 CJE0592 Campylobacter jejuni RM1221 hypothetical protein YP_178608.1 532701 D 195099 CDS YP_178609.1 57237595 3231353 533333..533716 1 NC_003912.7 hypothetical protein 533716 3231353 CJE0593 Campylobacter jejuni RM1221 hypothetical protein YP_178609.1 533333 D 195099 CDS YP_178610.1 57237596 3231354 533709..534083 1 NC_003912.7 identified by similarity to OMNI:NTL03ST1666; hypothetical protein 534083 3231354 CJE0594 Campylobacter jejuni RM1221 hypothetical protein YP_178610.1 533709 D 195099 CDS YP_178611.1 57237597 3231355 534080..535360 1 NC_003912.7 hypothetical protein 535360 3231355 CJE0595 Campylobacter jejuni RM1221 hypothetical protein YP_178611.1 534080 D 195099 CDS YP_178612.1 57238719 3232507 535302..535409 1 NC_003912.7 hypothetical protein 535409 3232507 CJE0596 Campylobacter jejuni RM1221 hypothetical protein YP_178612.1 535302 D 195099 CDS YP_178613.1 57237598 3231356 535409..535867 1 NC_003912.7 hypothetical protein 535867 3231356 CJE0597 Campylobacter jejuni RM1221 hypothetical protein YP_178613.1 535409 D 195099 CDS YP_178614.1 57238304 3232078 535929..536348 1 NC_003912.7 hypothetical protein 536348 3232078 CJE0598 Campylobacter jejuni RM1221 hypothetical protein YP_178614.1 535929 D 195099 CDS YP_178615.1 57238720 3232508 536266..536463 1 NC_003912.7 hypothetical protein 536463 3232508 CJE0599 Campylobacter jejuni RM1221 hypothetical protein YP_178615.1 536266 D 195099 CDS YP_178616.1 57238303 3232077 536456..536947 1 NC_003912.7 hypothetical protein 536947 3232077 CJE0600 Campylobacter jejuni RM1221 hypothetical protein YP_178616.1 536456 D 195099 CDS YP_178617.1 57238302 3232076 537061..538671 1 NC_003912.7 hypothetical protein 538671 3232076 CJE0601 Campylobacter jejuni RM1221 hypothetical protein YP_178617.1 537061 D 195099 CDS YP_178618.1 57238301 3232075 538788..538937 1 NC_003912.7 hypothetical protein 538937 3232075 CJE0602 Campylobacter jejuni RM1221 hypothetical protein YP_178618.1 538788 D 195099 CDS YP_178619.1 57238300 3232074 538943..539644 1 NC_003912.7 identified by similarity to OMNI:NTL01HP01386; hypothetical protein 539644 3232074 CJE0603 Campylobacter jejuni RM1221 hypothetical protein YP_178619.1 538943 D 195099 CDS YP_178620.1 57238299 3232073 539634..540008 1 NC_003912.7 identified by similarity to SP:P56132; match to protein family HMM PF03692; hypothetical protein 540008 3232073 CJE0604 Campylobacter jejuni RM1221 hypothetical protein YP_178620.1 539634 D 195099 CDS YP_178621.1 57238298 3232072 539981..541258 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00259; lipoprotein 541258 3232072 CJE0605 Campylobacter jejuni RM1221 lipoprotein YP_178621.1 539981 D 195099 CDS YP_178622.1 57238297 3232071 541255..542031 1 NC_003912.7 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 542031 trpC 3232071 trpC Campylobacter jejuni RM1221 indole-3-glycerol-phosphate synthase YP_178622.1 541255 D 195099 CDS YP_178623.1 57238296 3232070 542041..542526 1 NC_003912.7 identified by match to protein family HMM PF01230; Hit family protein 542526 3232070 CJE0607 Campylobacter jejuni RM1221 Hit family protein YP_178623.1 542041 D 195099 CDS YP_178624.1 57238295 3232069 542516..543514 1 NC_003912.7 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 543514 3232069 CJE0608 Campylobacter jejuni RM1221 tRNA 2-selenouridine synthase YP_178624.1 542516 D 195099 CDS YP_178625.1 57238294 3232067 complement(545084..545995) 1 NC_003912.7 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 545995 hemH 3232067 hemH Campylobacter jejuni RM1221 ferrochelatase YP_178625.1 545084 R 195099 CDS YP_178626.1 57238293 3232066 complement(545992..546858) 1 NC_003912.7 identified by match to protein family HMM PF01408; Gfo/Idh/MocA family oxidoreductase 546858 3232066 CJE0611 Campylobacter jejuni RM1221 Gfo/Idh/MocA family oxidoreductase YP_178626.1 545992 R 195099 CDS YP_178627.1 57238292 3232065 complement(546863..547936) 1 NC_003912.7 identified by match to protein family HMM PF01041; DegT/DnrJ/EryC1/StrS aminotransferase 547936 3232065 CJE0612 Campylobacter jejuni RM1221 DegT/DnrJ/EryC1/StrS aminotransferase YP_178627.1 546863 R 195099 CDS YP_178628.1 57238291 3232064 548051..550579 1 NC_003912.7 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 550579 alaS 3232064 alaS Campylobacter jejuni RM1221 alanyl-tRNA synthetase YP_178628.1 548051 D 195099 CDS YP_178629.1 57238290 3232063 550579..551130 1 NC_003912.7 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 551130 maf 3232063 maf Campylobacter jejuni RM1221 Maf-like protein YP_178629.1 550579 D 195099 CDS YP_178630.1 57238289 3232062 551127..553058 1 NC_003912.7 identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin-binding protein 1A 553058 pbpA 3232062 pbpA Campylobacter jejuni RM1221 penicillin-binding protein 1A YP_178630.1 551127 D 195099 CDS YP_178631.1 57238288 3232061 complement(553086..555659) 1 NC_003912.7 identified by similarity to SP:Q9RA63; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent chaperone protein ClpB 555659 clpB 3232061 clpB Campylobacter jejuni RM1221 ATP-dependent chaperone protein ClpB YP_178631.1 553086 R 195099 CDS YP_178632.1 57238287 3232060 complement(555771..556061) 1 NC_003912.7 identified by similarity to OMNI:NTL01TE1575; match to protein family HMM PF02583; hypothetical protein 556061 3232060 CJE0617 Campylobacter jejuni RM1221 hypothetical protein YP_178632.1 555771 R 195099 CDS YP_178633.1 57238286 3232059 556188..557522 1 NC_003912.7 identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 557522 ctpA 3232059 ctpA Campylobacter jejuni RM1221 carboxyl-terminal protease YP_178633.1 556188 D 195099 CDS YP_178634.1 57238285 3232058 557524..558234 1 NC_003912.7 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 558234 purC 3232058 purC Campylobacter jejuni RM1221 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_178634.1 557524 D 195099 CDS YP_178635.1 57238284 3232057 558243..558488 1 NC_003912.7 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, purS protein 558488 purS 3232057 purS Campylobacter jejuni RM1221 phosphoribosylformylglycinamidine synthase, purS protein YP_178635.1 558243 D 195099 CDS YP_178636.1 57238283 3232056 558490..559137 1 NC_003912.7 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 559137 purQ 3232056 purQ Campylobacter jejuni RM1221 phosphoribosylformylglycinamidine synthase I YP_178636.1 558490 D 195099 CDS YP_178637.1 57238282 3232055 559221..560330 1 NC_003912.7 identified by similarity to OMNI:NTL01HP01259; hypothetical protein 560330 3232055 CJE0622 Campylobacter jejuni RM1221 hypothetical protein YP_178637.1 559221 D 195099 CDS YP_178638.1 57238281 3232054 560311..561003 1 NC_003912.7 identified by similarity to SP:O25903; match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase 561003 3232054 CJE0623 Campylobacter jejuni RM1221 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_178638.1 560311 D 195099 CDS YP_178639.1 57238280 3232053 560997..561365 1 NC_003912.7 identified by similarity to SP:P37002; match to protein family HMM PF02537; match to protein family HMM TIGR00494; hypothetical protein 561365 3232053 CJE0624 Campylobacter jejuni RM1221 hypothetical protein YP_178639.1 560997 D 195099 CDS YP_178640.1 57238279 3232052 561438..563264 1 NC_003912.7 molecular chaperone; heat shock protein 90 563264 htpG 3232052 htpG Campylobacter jejuni RM1221 heat shock protein 90 YP_178640.1 561438 D 195099 CDS YP_178641.1 57238278 3232051 563261..563578 1 NC_003912.7 identified by similarity to OMNI:NTL01OI2305; hypothetical protein 563578 3232051 CJE0626 Campylobacter jejuni RM1221 hypothetical protein YP_178641.1 563261 D 195099 CDS YP_178642.1 57238277 3232050 563578..564012 1 NC_003912.7 hypothetical protein 564012 3232050 CJE0627 Campylobacter jejuni RM1221 hypothetical protein YP_178642.1 563578 D 195099 CDS YP_178643.1 57238276 3232049 564133..565785 1 NC_003912.7 identified by match to protein family HMM PF02690; Na/Pi-cotransporter 565785 3232049 CJE0628 Campylobacter jejuni RM1221 Na/Pi-cotransporter YP_178643.1 564133 D 195099 CDS YP_178644.1 57238275 3232048 complement(565800..567539) 1 NC_003912.7 identified by similarity to SP:P08149; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 567539 3232048 CJE0629 Campylobacter jejuni RM1221 penicillin-binding protein YP_178644.1 565800 R 195099 CDS YP_178645.1 57238274 3232047 complement(567597..567893) 1 NC_003912.7 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 567893 fliE 3232047 fliE Campylobacter jejuni RM1221 flagellar hook-basal body protein FliE YP_178645.1 567597 R 195099 CDS YP_178646.1 57238273 3232046 complement(567900..568394) 1 NC_003912.7 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 568394 flgC 3232046 flgC Campylobacter jejuni RM1221 flagellar basal body rod protein FlgC YP_178646.1 567900 R 195099 CDS YP_178647.1 57238272 3232045 complement(568404..568835) 1 NC_003912.7 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 568835 flgB 3232045 flgB Campylobacter jejuni RM1221 flagellar basal body rod protein FlgB YP_178647.1 568404 R 195099 CDS YP_178648.1 57238271 3232044 complement(568915..569817) 1 NC_003912.7 identified by similarity to GB:AAP78169.1; match to protein family HMM PF02618; hypothetical protein 569817 3232044 CJE0633 Campylobacter jejuni RM1221 hypothetical protein YP_178648.1 568915 R 195099 CDS YP_178649.1 57238270 3232043 569831..572401 1 NC_003912.7 identified by similarity to OMNI:HP0586; hypothetical protein 572401 3232043 CJE0634 Campylobacter jejuni RM1221 hypothetical protein YP_178649.1 569831 D 195099 CDS YP_178650.1 57238269 3232042 572518..574722 1 NC_003912.7 identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178; isocitrate dehydrogenase, NADP-dependent 574722 icd 3232042 icd Campylobacter jejuni RM1221 isocitrate dehydrogenase, NADP-dependent YP_178650.1 572518 D 195099 CDS YP_178651.1 57238268 3232041 574719..575621 1 NC_003912.7 identified by similarity to SP:P49814; match to protein family HMM PF00056; match to protein family HMM PF02866; malate dehydrogenase 575621 mdh 3232041 mdh Campylobacter jejuni RM1221 malate dehydrogenase YP_178651.1 574719 D 195099 CDS YP_178652.1 57238267 3232040 575622..576785 1 NC_003912.7 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 576785 sucC 3232040 sucC Campylobacter jejuni RM1221 succinyl-CoA synthetase subunit beta YP_178652.1 575622 D 195099 CDS YP_178653.1 57238266 3232039 576795..577664 1 NC_003912.7 identified by similarity to SP:P07459; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthase, alpha subunit 577664 sucD 3232039 sucD Campylobacter jejuni RM1221 succinyl-CoA synthase, alpha subunit YP_178653.1 576795 D 195099 CDS YP_178654.1 57238265 3232038 577678..577989 1 NC_003912.7 identified by similarity to GP:2935178; match to protein family HMM PF00037; 2-oxoglutarate-acceptor oxidoreductase subunit OorD 577989 oorD 3232038 oorD Campylobacter jejuni RM1221 2-oxoglutarate-acceptor oxidoreductase subunit OorD YP_178654.1 577678 D 195099 CDS YP_178655.1 57238264 3232037 577998..579122 1 NC_003912.7 Couples the complete acetyl-CoA oxidation to aromatic ring reduction by the use of the low-potential electron shuttle ferredoxin; 2-oxoglutarate-acceptor oxidoreductase subunit OorA 579122 oorA 3232037 oorA Campylobacter jejuni RM1221 2-oxoglutarate-acceptor oxidoreductase subunit OorA YP_178655.1 577998 D 195099 CDS YP_178656.1 57238263 3232036 579123..579968 1 NC_003912.7 Catalyzes the two-electron reduction of the C2 and C3(1) diene system of 15,16-dihydrobiliverdin; 2-oxoglutarate-acceptor oxidoreductase subunit OorB 579968 oorB 3232036 oorB Campylobacter jejuni RM1221 2-oxoglutarate-acceptor oxidoreductase subunit OorB YP_178656.1 579123 D 195099 CDS YP_178657.1 57238262 3232035 579965..580522 1 NC_003912.7 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; 2-oxoglutarate-acceptor oxidoreductase subunit OorC 580522 oorC 3232035 oorC Campylobacter jejuni RM1221 2-oxoglutarate-acceptor oxidoreductase subunit OorC YP_178657.1 579965 D 195099 CDS YP_178658.1 57238261 3232034 580661..580924 1 NC_003912.7 hypothetical protein 580924 3232034 CJE0643 Campylobacter jejuni RM1221 hypothetical protein YP_178658.1 580661 D 195099 CDS YP_178659.1 57238260 3232033 580927..581463 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00225; hypothetical protein 581463 3232033 CJE0644 Campylobacter jejuni RM1221 hypothetical protein YP_178659.1 580927 D 195099 CDS YP_178660.1 57238259 3232032 581477..582370 1 NC_003912.7 identified by similarity to SP:Q53479; match to protein family HMM PF00348; polyprenyl synthetase 582370 3232032 CJE0645 Campylobacter jejuni RM1221 polyprenyl synthetase YP_178660.1 581477 D 195099 CDS YP_178661.1 57238258 3232031 582370..583668 1 NC_003912.7 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 583668 hemA 3232031 hemA Campylobacter jejuni RM1221 glutamyl-tRNA reductase YP_178661.1 582370 D 195099 CDS YP_178662.1 57238257 3232030 583652..585361 1 NC_003912.7 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 585361 proS 3232030 proS Campylobacter jejuni RM1221 prolyl-tRNA synthetase YP_178662.1 583652 D 195099 CDS YP_178663.1 57238256 3232029 585358..585747 1 NC_003912.7 hypothetical protein 585747 3232029 CJE0648 Campylobacter jejuni RM1221 hypothetical protein YP_178663.1 585358 D 195099 CDS YP_178664.1 57238255 3232028 585744..586667 1 NC_003912.7 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 586667 hemC 3232028 hemC Campylobacter jejuni RM1221 porphobilinogen deaminase YP_178664.1 585744 D 195099 CDS YP_178665.1 57238254 3232027 586664..588466 1 NC_003912.7 identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 588466 3232027 CJE0650 Campylobacter jejuni RM1221 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_178665.1 586664 D 195099 CDS YP_178666.1 57238253 3232026 588622..588987 1 NC_003912.7 possibly involved in flagella export; flagellar protein FlaG 588987 flaG 3232026 flaG Campylobacter jejuni RM1221 flagellar protein FlaG YP_178666.1 588622 D 195099 CDS YP_178667.1 57238252 3232025 588990..590900 1 NC_003912.7 Also called hook-associated protein 2; involved in flagellin assembly; flagellar capping protein 590900 fliD 3232025 fliD Campylobacter jejuni RM1221 flagellar capping protein YP_178667.1 588990 D 195099 CDS YP_178668.1 57238251 3232024 590912..591298 1 NC_003912.7 flagellin specific chaperone; flagellar protein FliS 591298 fliS 3232024 fliS Campylobacter jejuni RM1221 flagellar protein FliS YP_178668.1 590912 D 195099 CDS YP_178669.1 57238250 3232023 591279..591554 1 NC_003912.7 hypothetical protein 591554 3232023 CJE0654 Campylobacter jejuni RM1221 hypothetical protein YP_178669.1 591279 D 195099 CDS YP_178670.1 57238249 3232022 591986..592555 1 NC_003912.7 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 592555 efp 3232022 efp Campylobacter jejuni RM1221 elongation factor P YP_178670.1 591986 D 195099 CDS YP_178671.1 57238248 3232021 592715..593407 1 NC_003912.7 identified by similarity to OMNI:CC1200; hypothetical protein 593407 3232021 CJE0656 Campylobacter jejuni RM1221 hypothetical protein YP_178671.1 592715 D 195099 CDS YP_178672.1 57238247 3232020 593394..594347 1 NC_003912.7 identified by similarity to PIR:AF0329; hypothetical protein 594347 3232020 CJE0657 Campylobacter jejuni RM1221 hypothetical protein YP_178672.1 593394 D 195099 CDS YP_178673.1 57238246 3232019 594357..595361 1 NC_003912.7 identified by similarity to OMNI:CC1198; hypothetical protein 595361 3232019 CJE0658 Campylobacter jejuni RM1221 hypothetical protein YP_178673.1 594357 D 195099 CDS YP_178674.1 57238245 3232018 595486..596772 1 NC_003912.7 identified by similarity to PIR:C95236; hypothetical protein 596772 3232018 CJE0659 Campylobacter jejuni RM1221 hypothetical protein YP_178674.1 595486 D 195099 CDS YP_178675.1 57238244 3232017 596783..597580 1 NC_003912.7 identified by similarity to OMNI:PP1699; hypothetical protein 597580 3232017 CJE0660 Campylobacter jejuni RM1221 hypothetical protein YP_178675.1 596783 D 195099 CDS YP_178676.1 57238243 3232016 complement(597577..598662) 1 NC_003912.7 identified by similarity to OMNI:EF0906; hypothetical protein 598662 3232016 CJE0661 Campylobacter jejuni RM1221 hypothetical protein YP_178676.1 597577 R 195099 CDS YP_178677.1 57238242 3232015 complement(598659..599891) 1 NC_003912.7 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 599891 proA 3232015 proA Campylobacter jejuni RM1221 gamma-glutamyl phosphate reductase YP_178677.1 598659 R 195099 CDS YP_178678.1 57238241 3232014 599962..600897 1 NC_003912.7 identified by match to protein family HMM PF00070; pyridine nucleotide-disulphide oxidoreductase 600897 3232014 CJE0663 Campylobacter jejuni RM1221 pyridine nucleotide-disulphide oxidoreductase YP_178678.1 599962 D 195099 CDS YP_178679.1 57238240 3232012 complement(602453..603382) 1 NC_003912.7 identified by similarity to GP:27360586; hypothetical protein 603382 3232012 CJE0666 Campylobacter jejuni RM1221 hypothetical protein YP_178679.1 602453 R 195099 CDS YP_178680.1 57238239 3232011 603536..604912 1 NC_003912.7 unwinds double stranded DNA; replicative DNA helicase 604912 dnaB 3232011 dnaB Campylobacter jejuni RM1221 replicative DNA helicase YP_178680.1 603536 D 195099 CDS YP_178681.1 57238238 3232010 605017..605577 1 NC_003912.7 hypothetical protein 605577 3232010 CJE0668 Campylobacter jejuni RM1221 hypothetical protein YP_178681.1 605017 D 195099 CDS YP_178682.1 57238237 3232009 605568..605774 1 NC_003912.7 hypothetical protein 605774 3232009 CJE0669 Campylobacter jejuni RM1221 hypothetical protein YP_178682.1 605568 D 195099 CDS YP_178683.1 57238236 3232008 605904..606971 1 NC_003912.7 identified by similarity to GP:4155226; GTP-binding protein 606971 3232008 CJE0670 Campylobacter jejuni RM1221 GTP-binding protein YP_178683.1 605904 D 195099 CDS YP_178684.1 57238235 3232007 606982..607152 1 NC_003912.7 hypothetical protein 607152 3232007 CJE0671 Campylobacter jejuni RM1221 hypothetical protein YP_178684.1 606982 D 195099 CDS YP_178685.1 57238234 3232006 607166..607471 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00661; hypothetical protein 607471 3232006 CJE0672 Campylobacter jejuni RM1221 hypothetical protein YP_178685.1 607166 D 195099 CDS YP_178686.1 57238233 3232004 608545..609417 1 NC_003912.7 identified by similarity to SP:P52133; transcriptional regulator 609417 3232004 CJE0674 Campylobacter jejuni RM1221 transcriptional regulator YP_178686.1 608545 D 195099 CDS YP_178687.1 57238232 3232003 609716..610735 1 NC_003912.7 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 610735 ribB 3232003 ribB Campylobacter jejuni RM1221 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein YP_178687.1 609716 D 195099 CDS YP_178688.1 57238231 3232002 610747..611190 1 NC_003912.7 identified by match to protein family HMM PF02637; GatB/Yqey family protein 611190 3232002 CJE0676 Campylobacter jejuni RM1221 GatB/Yqey family protein YP_178688.1 610747 D 195099 CDS YP_178689.1 57238230 3232001 611208..612908 1 NC_003912.7 catalyzes the formation of 2-acetolactate from pyruvate, leucine resistant; also known as acetolactate synthase 3 large subunit; acetolactate synthase 3 catalytic subunit 612908 ilvB 3232001 ilvB Campylobacter jejuni RM1221 acetolactate synthase 3 catalytic subunit YP_178689.1 611208 D 195099 CDS YP_178690.1 57238229 3232000 612905..613369 1 NC_003912.7 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 613369 ilvH 3232000 ilvH Campylobacter jejuni RM1221 acetolactate synthase 3 regulatory subunit YP_178690.1 612905 D 195099 CDS YP_178691.1 57238228 3231999 613366..614331 1 NC_003912.7 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 614331 lpxD 3231999 lpxD Campylobacter jejuni RM1221 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_178691.1 613366 D 195099 CDS YP_178692.1 57238227 3231998 complement(614320..615348) 1 NC_003912.7 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 615348 queA 3231998 queA Campylobacter jejuni RM1221 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_178692.1 614320 R 195099 CDS YP_178693.1 57238226 3231997 complement(615341..616078) 1 NC_003912.7 identified by similarity to SP:P27857; match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC 616078 tatC 3231997 tatC Campylobacter jejuni RM1221 Sec-independent protein translocase TatC YP_178693.1 615341 R 195099 CDS YP_178694.1 57238225 3231996 complement(616071..616487) 1 NC_003912.7 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 616487 tatB 3231996 tatB Campylobacter jejuni RM1221 sec-independent translocase YP_178694.1 616071 R 195099 CDS YP_178695.1 57238224 3231995 complement(616545..617612) 1 NC_003912.7 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 617612 3231995 CJE0683 Campylobacter jejuni RM1221 coproporphyrinogen III oxidase YP_178695.1 616545 R 195099 CDS YP_178696.1 57238223 3231994 617713..618183 1 NC_003912.7 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 618183 nidH 3231994 nidH Campylobacter jejuni RM1221 dinucleoside polyphosphate hydrolase YP_178696.1 617713 D 195099 CDS YP_178697.1 57238222 3231993 618185..619387 1 NC_003912.7 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 619387 3231993 CJE0685 Campylobacter jejuni RM1221 aspartate kinase YP_178697.1 618185 D 195099 CDS YP_178698.1 57238221 3231992 619388..619924 1 NC_003912.7 identified by similarity to PIR:F64673; hypothetical protein 619924 3231992 CJE0686 Campylobacter jejuni RM1221 hypothetical protein YP_178698.1 619388 D 195099 CDS YP_178699.1 57238220 3231991 619930..620529 1 NC_003912.7 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 620529 3231991 CJE0687 Campylobacter jejuni RM1221 DNA polymerase III subunit delta' YP_178699.1 619930 D 195099 CDS YP_178700.1 57238219 3231990 620531..621673 1 NC_003912.7 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 621673 folP 3231990 folP Campylobacter jejuni RM1221 dihydropteroate synthase YP_178700.1 620531 D 195099 CDS YP_178701.1 57238218 3231989 621674..623617 1 NC_003912.7 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 623617 ligA 3231989 ligA Campylobacter jejuni RM1221 NAD-dependent DNA ligase LigA YP_178701.1 621674 D 195099 CDS YP_178702.1 57238217 3231988 623598..624602 1 NC_003912.7 hypothetical protein 624602 3231988 CJE0690 Campylobacter jejuni RM1221 hypothetical protein YP_178702.1 623598 D 195099 CDS YP_178703.1 57238216 3231987 624599..625360 1 NC_003912.7 identified by similarity to SP:Q06803; match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 625360 tlyA 3231987 tlyA Campylobacter jejuni RM1221 hemolysin A YP_178703.1 624599 D 195099 CDS YP_178704.1 57238215 3231986 625326..626180 1 NC_003912.7 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 626180 3231986 CJE0692 Campylobacter jejuni RM1221 bifunctional riboflavin kinase/FMN adenylyltransferase YP_178704.1 625326 D 195099 CDS YP_178705.1 57238214 3231985 626170..626877 1 NC_003912.7 identified by match to protein family HMM TIGR00740; methyltransferase 626877 3231985 CJE0693 Campylobacter jejuni RM1221 methyltransferase YP_178705.1 626170 D 195099 CDS YP_178706.1 57238213 3231984 complement(626867..627082) 1 NC_003912.7 identified by similarity to GP:498878; lipoprotein 627082 3231984 CJE0694 Campylobacter jejuni RM1221 lipoprotein YP_178706.1 626867 R 195099 CDS YP_178707.1 57238212 3231983 complement(627085..627519) 1 NC_003912.7 hypothetical protein 627519 3231983 CJE0695 Campylobacter jejuni RM1221 hypothetical protein YP_178707.1 627085 R 195099 CDS YP_178708.1 57238211 3231982 complement(627577..628209) 1 NC_003912.7 identified by similarity to GB:AAP77676.1; match to protein family HMM PF03458; hypothetical protein 628209 3231982 CJE0696 Campylobacter jejuni RM1221 hypothetical protein YP_178708.1 627577 R 195099 CDS YP_178709.1 57238210 3231981 complement(628220..628870) 1 NC_003912.7 identified by similarity to GP:28805682; match to protein family HMM PF01223; DNA/RNA non-specific endonuclease 628870 3231981 CJE0697 Campylobacter jejuni RM1221 DNA/RNA non-specific endonuclease YP_178709.1 628220 R 195099 CDS YP_178710.1 57238209 3231980 complement(628867..629493) 1 NC_003912.7 identified by similarity to SP:P20625; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 629493 nth 3231980 nth Campylobacter jejuni RM1221 endonuclease III YP_178710.1 628867 R 195099 CDS YP_178711.1 57238208 3231979 629574..630395 1 NC_003912.7 identified by similarity to SP:Q46105; match to protein family HMM PF00639; major antigenic peptide PEB4 630395 3231979 CJE0699 Campylobacter jejuni RM1221 major antigenic peptide PEB4 YP_178711.1 629574 D 195099 CDS YP_178712.1 57238207 3231978 630395..631459 1 NC_003912.7 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 631459 fbaA 3231978 fbaA Campylobacter jejuni RM1221 fructose-bisphosphate aldolase YP_178712.1 630395 D 195099 CDS YP_178713.1 57238206 3231977 631554..632996 1 NC_003912.7 hypothetical protein 632996 3231977 CJE0701 Campylobacter jejuni RM1221 hypothetical protein YP_178713.1 631554 D 195099 CDS YP_178714.1 57238205 3231976 632993..633946 1 NC_003912.7 identified by similarity to SP:P28612; match to protein family HMM PF00691; chemotaxis protein MotB 633946 3231976 CJE0702 Campylobacter jejuni RM1221 chemotaxis protein MotB YP_178714.1 632993 D 195099 CDS YP_178715.1 57238204 3231975 633933..634808 1 NC_003912.7 identified by similarity to OMNI:SO1978; hypothetical protein 634808 3231975 CJE0703 Campylobacter jejuni RM1221 hypothetical protein YP_178715.1 633933 D 195099 CDS YP_178716.1 57238203 3231974 complement(634800..636143) 1 NC_003912.7 identified by similarity to SP:P45320; match to protein family HMM PF00209; sodium-dependent transporter 636143 3231974 CJE0704 Campylobacter jejuni RM1221 sodium-dependent transporter YP_178716.1 634800 R 195099 CDS YP_178717.1 57238202 3231973 complement(636194..636862) 1 NC_003912.7 identified by similarity to GP:29896050; match to protein family HMM PF03473; match to protein family HMM PF03475; MOSC domain-containing protein 636862 3231973 CJE0705 Campylobacter jejuni RM1221 MOSC domain-containing protein YP_178717.1 636194 R 195099 CDS YP_178718.1 57238201 3231972 complement(636859..638562) 1 NC_003912.7 identified by similarity to SP:P36655; match to protein family HMM PF02683; thiol:disulfide interchange protein DsbD 638562 dsbD 3231972 dsbD Campylobacter jejuni RM1221 thiol:disulfide interchange protein DsbD YP_178718.1 636859 R 195099 CDS YP_178719.1 57238200 3231971 638657..639538 1 NC_003912.7 identified by similarity to OMNI:NTL01CE2558; match to protein family HMM PF03976; hypothetical protein 639538 3231971 CJE0707 Campylobacter jejuni RM1221 hypothetical protein YP_178719.1 638657 D 195099 CDS YP_178720.1 57238199 3231970 639547..640737 1 NC_003912.7 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; carboxypeptidase 640737 3231970 CJE0708 Campylobacter jejuni RM1221 carboxypeptidase YP_178720.1 639547 D 195099 CDS YP_178721.1 57238198 3231969 640816..641988 1 NC_003912.7 identified by similarity to SP:P75830; match to protein family HMM PF00529; match to protein family HMM TIGR01730; macrolide-specific efflux protein macA 641988 3231969 CJE0709 Campylobacter jejuni RM1221 macrolide-specific efflux protein macA YP_178721.1 640816 D 195099 CDS YP_178722.1 57238197 3231968 641988..643913 1 NC_003912.7 identified by similarity to SP:P75831; match to protein family HMM PF00005; match to protein family HMM PF02687; macrolide-specific efflux protein macB 643913 3231968 CJE0710 Campylobacter jejuni RM1221 macrolide-specific efflux protein macB YP_178722.1 641988 D 195099 CDS YP_178723.1 57238196 3231967 643915..645285 1 NC_003912.7 identified by match to protein family HMM PF02321; outer membrane efflux protein 645285 3231967 CJE0711 Campylobacter jejuni RM1221 outer membrane efflux protein YP_178723.1 643915 D 195099 CDS YP_178724.1 57238195 3231966 complement(645288..646466) 1 NC_003912.7 identified by similarity to OMNI:NTL01LL1763; hypothetical protein 646466 3231966 CJE0712 Campylobacter jejuni RM1221 hypothetical protein YP_178724.1 645288 R 195099 CDS YP_178725.1 57238194 3231965 complement(646453..647463) 1 NC_003912.7 identified by similarity to OMNI:NMB1274; match to protein family HMM PF04311; hypothetical protein 647463 3231965 CJE0713 Campylobacter jejuni RM1221 hypothetical protein YP_178725.1 646453 R 195099 CDS YP_178726.1 57238193 3231964 complement(647464..648840) 1 NC_003912.7 identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062; alginate O-acetyltransferase AlgI 648840 algI 3231964 algI Campylobacter jejuni RM1221 alginate O-acetyltransferase AlgI YP_178726.1 647464 R 195099 CDS YP_178727.1 57238192 3231963 complement(648883..649386) 1 NC_003912.7 identified by similarity to SP:P52093; match to protein family HMM PF00210; nonheme iron-containing ferritin 649386 ftn 3231963 ftn Campylobacter jejuni RM1221 nonheme iron-containing ferritin YP_178727.1 648883 R 195099 CDS YP_178728.1 57238191 3231962 649566..650561 1 NC_003912.7 identified by match to protein family HMM PF01547; phosphate ABC transporter periplasmic phosphate-binding protein 650561 3231962 CJE0716 Campylobacter jejuni RM1221 phosphate ABC transporter periplasmic phosphate-binding protein YP_178728.1 649566 D 195099 CDS YP_178729.1 57238190 3231961 650571..651485 1 NC_003912.7 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 651485 3231961 CJE0717 Campylobacter jejuni RM1221 phosphate ABC transporter permease YP_178729.1 650571 D 195099 CDS YP_178730.1 57238189 3231960 651482..652570 1 NC_003912.7 identified by match to protein family HMM PF00528; phosphate ABC transporter permease 652570 3231960 CJE0718 Campylobacter jejuni RM1221 phosphate ABC transporter permease YP_178730.1 651482 D 195099 CDS YP_178731.1 57238188 3231959 652567..653307 1 NC_003912.7 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 653307 pstB 3231959 pstB Campylobacter jejuni RM1221 phosphate ABC transporter ATP-binding protein YP_178731.1 652567 D 195099 CDS YP_178732.1 57238187 3231957 complement(654603..654701) 1 NC_003912.7 hypothetical protein 654701 3231957 CJE0721 Campylobacter jejuni RM1221 hypothetical protein YP_178732.1 654603 R 195099 CDS YP_178733.1 57238186 3231956 654687..656003 1 NC_003912.7 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 656003 3231956 CJE0722 Campylobacter jejuni RM1221 MATE efflux family protein YP_178733.1 654687 D 195099 CDS YP_178734.1 57238185 3231955 655964..656626 1 NC_003912.7 identified by similarity to GP:28203619; match to protein family HMM PF01863; hypothetical protein 656626 3231955 CJE0723 Campylobacter jejuni RM1221 hypothetical protein YP_178734.1 655964 D 195099 CDS YP_178735.1 57238184 3231954 656668..658188 1 NC_003912.7 hypothetical protein 658188 3231954 CJE0724 Campylobacter jejuni RM1221 hypothetical protein YP_178735.1 656668 D 195099 CDS YP_178736.1 57238183 3231953 658169..660358 1 NC_003912.7 identified by similarity to SP:Q02987; match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 660358 hypF 3231953 hypF Campylobacter jejuni RM1221 [NiFe] hydrogenase maturation protein HypF YP_178736.1 658169 D 195099 CDS YP_178737.1 57238182 3231952 660435..661178 1 NC_003912.7 identified by similarity to SP:P24190; match to protein family HMM PF01495; match to protein family HMM TIGR00073; hydrogenase accessory protein HypB 661178 hypB 3231952 hypB Campylobacter jejuni RM1221 hydrogenase accessory protein HypB YP_178737.1 660435 D 195099 CDS YP_178738.1 57238181 3231951 661178..661459 1 NC_003912.7 identified by similarity to GP:15430693; match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 661459 hypC 3231951 hypC Campylobacter jejuni RM1221 hydrogenase assembly chaperone HypC/HupF YP_178738.1 661178 D 195099 CDS YP_178739.1 57238180 3231950 661443..662534 1 NC_003912.7 identified by similarity to SP:P24192; match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 662534 hypD 3231950 hypD Campylobacter jejuni RM1221 hydrogenase expression/formation protein HypD YP_178739.1 661443 D 195099 CDS YP_178740.1 57238179 3231949 662531..663505 1 NC_003912.7 identified by similarity to SP:P40595; match to protein family HMM PF00586; match to protein family HMM PF02769; hydrogenase expression/formation protein HypE 663505 hypE 3231949 hypE Campylobacter jejuni RM1221 hydrogenase expression/formation protein HypE YP_178740.1 662531 D 195099 CDS YP_178741.1 57238178 3231948 663505..663849 1 NC_003912.7 identified by similarity to SP:P24189; match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel insertion protein HypA 663849 hypA 3231948 hypA Campylobacter jejuni RM1221 hydrogenase nickel insertion protein HypA YP_178741.1 663505 D 195099 CDS YP_178742.1 57238177 3231947 663944..665971 1 NC_003912.7 identified by similarity to SP:P08763; match to protein family HMM PF01555; type III restriction/modification enzyme, methylase subunit 665971 3231947 CJE0731 Campylobacter jejuni RM1221 type III restriction/modification enzyme, methylase subunit YP_178742.1 663944 D 195099 CDS YP_178743.1 57236942 3230685 665952..668513 1 NC_003912.7 identified by similarity to SP:P08764; type III restriction-modification enzyme 668513 3230685 CJE0732 Campylobacter jejuni RM1221 type III restriction-modification enzyme YP_178743.1 665952 D 195099 CDS YP_178744.1 57236943 3230686 complement(668544..669509) 1 NC_003912.7 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 669509 3230686 CJE0733 Campylobacter jejuni RM1221 DNA polymerase III subunit delta YP_178744.1 668544 R 195099 CDS YP_178745.1 57236944 3230687 complement(669502..671436) 1 NC_003912.7 identified by match to protein family HMM PF00773; RNB-like protein 671436 3230687 CJE0734 Campylobacter jejuni RM1221 RNB-like protein YP_178745.1 669502 R 195099 CDS YP_178746.1 57236945 3230688 671555..672577 1 NC_003912.7 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 672577 ilvC 3230688 ilvC Campylobacter jejuni RM1221 ketol-acid reductoisomerase YP_178746.1 671555 D 195099 CDS YP_178747.1 57236946 3230689 672581..673663 1 NC_003912.7 identified by similarity to OMNI:BB0770; match to protein family HMM PF04748; hypothetical protein 673663 3230689 CJE0736 Campylobacter jejuni RM1221 hypothetical protein YP_178747.1 672581 D 195099 CDS YP_178748.1 57236947 3230690 673653..674426 1 NC_003912.7 identified by similarity to OMNI:HP0333; match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA processing protein A 674426 dprA 3230690 dprA Campylobacter jejuni RM1221 DNA processing protein A YP_178748.1 673653 D 195099 CDS YP_178749.1 57236948 3230691 674423..674806 1 NC_003912.7 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 674806 3230691 CJE0738 Campylobacter jejuni RM1221 Holliday junction resolvase-like protein YP_178749.1 674423 D 195099 CDS YP_178750.1 57236949 3230692 674835..675674 1 NC_003912.7 identified by similarity to OMNI:NTL01PH01412; match to protein family HMM PF01189; NOL1/NOP2/sun family protein 675674 3230692 CJE0739 Campylobacter jejuni RM1221 NOL1/NOP2/sun family protein YP_178750.1 674835 D 195099 CDS YP_178751.1 57236950 3230693 complement(675850..676347) 1 NC_003912.7 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 676347 msrA 3230693 msrA Campylobacter jejuni RM1221 methionine sulfoxide reductase A YP_178751.1 675850 R 195099 CDS YP_178752.1 57236951 3230694 complement(676389..676907) 1 NC_003912.7 catalyzes the hydrolysis of pyrophosphate; inorganic pyrophosphatase 676907 ppa 3230694 ppa Campylobacter jejuni RM1221 inorganic pyrophosphatase YP_178752.1 676389 R 195099 CDS YP_178753.1 57236952 3230695 complement(676917..677495) 1 NC_003912.7 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 677495 adk 3230695 adk Campylobacter jejuni RM1221 adenylate kinase YP_178753.1 676917 R 195099 CDS YP_178754.1 57236953 3230696 complement(677492..679243) 1 NC_003912.7 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 679243 aspS 3230696 aspS Campylobacter jejuni RM1221 aspartyl-tRNA synthetase YP_178754.1 677492 R 195099 CDS YP_178755.1 57236954 3230697 679334..680194 1 NC_003912.7 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 680194 pnk 3230697 pnk Campylobacter jejuni RM1221 inorganic polyphosphate/ATP-NAD kinase YP_178755.1 679334 D 195099 CDS YP_178756.1 57236955 3230698 680194..681717 1 NC_003912.7 identified by similarity to SP:O25943; match to protein family HMM TIGR00634; DNA repair protein RecN 681717 recN 3230698 recN Campylobacter jejuni RM1221 DNA repair protein RecN YP_178756.1 680194 D 195099 CDS YP_178757.1 57236956 3230699 681823..683067 1 NC_003912.7 identified by similarity to PIR:C97489; match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator/GGDEF domain-containing protein 683067 3230699 CJE0746 Campylobacter jejuni RM1221 response regulator/GGDEF domain-containing protein YP_178757.1 681823 D 195099 CDS YP_178758.1 57236957 3230700 683058..683873 1 NC_003912.7 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 683873 3230700 CJE0747 Campylobacter jejuni RM1221 TatD family hydrolase YP_178758.1 683058 D 195099 CDS YP_178759.1 57236958 3230701 683873..684991 1 NC_003912.7 identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476; membrane-bound lytic murein transglycosylase D 684991 3230701 CJE0748 Campylobacter jejuni RM1221 membrane-bound lytic murein transglycosylase D YP_178759.1 683873 D 195099 CDS YP_178760.1 57236959 3230702 684951..685778 1 NC_003912.7 identified by similarity to SP:Q9ZJ38; match to protein family HMM PF03330; match to protein family HMM TIGR00413; rare lipoprotein A 685778 rlpA 3230702 rlpA Campylobacter jejuni RM1221 rare lipoprotein A YP_178760.1 684951 D 195099 CDS YP_178761.1 57236960 3230703 685784..686272 1 NC_003912.7 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670; YrbI family phosphatase 686272 3230703 CJE0750 Campylobacter jejuni RM1221 YrbI family phosphatase YP_178761.1 685784 D 195099 CDS YP_178762.1 57236961 3230704 686344..686778 1 NC_003912.7 identified by similarity to SP:Q60303; hypothetical protein 686778 3230704 CJE0751 Campylobacter jejuni RM1221 hypothetical protein YP_178762.1 686344 D 195099 CDS YP_178763.1 57236962 3230705 686760..687221 1 NC_003912.7 identified by match to protein family HMM PF03968; OstA family protein 687221 3230705 CJE0752 Campylobacter jejuni RM1221 OstA family protein YP_178763.1 686760 D 195099 CDS YP_178764.1 57236963 3230706 687218..687814 1 NC_003912.7 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 687814 engB 3230706 engB Campylobacter jejuni RM1221 ribosome biogenesis GTP-binding protein YsxC YP_178764.1 687218 D 195099 CDS YP_178765.1 57236964 3230707 687811..688305 1 NC_003912.7 hypothetical protein 688305 3230707 CJE0754 Campylobacter jejuni RM1221 hypothetical protein YP_178765.1 687811 D 195099 CDS YP_178766.1 57236965 3230708 688312..690111 1 NC_003912.7 identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2 690111 pbpC 3230708 pbpC Campylobacter jejuni RM1221 penicillin-binding protein 2 YP_178766.1 688312 D 195099 CDS YP_178767.1 57236966 3230709 complement(690232..692022) 1 NC_003912.7 identified by match to protein family HMM PF00557; M24 family peptidase 692022 3230709 CJE0756 Campylobacter jejuni RM1221 M24 family peptidase YP_178767.1 690232 R 195099 CDS YP_178768.1 57236967 3230710 complement(692038..693591) 1 NC_003912.7 identified by similarity to SP:P36574; match to protein family HMM PF00854; match to protein family HMM TIGR00924; di-/tripeptide transporter 693591 3230710 CJE0757 Campylobacter jejuni RM1221 di-/tripeptide transporter YP_178768.1 692038 R 195099 CDS YP_178769.1 57236968 3230712 complement(694507..694746) 1 NC_003912.7 hypothetical protein 694746 3230712 CJE0759 Campylobacter jejuni RM1221 hypothetical protein YP_178769.1 694507 R 195099 CDS YP_178770.1 57236969 3230713 complement(695404..695952) 1 NC_003912.7 hypothetical protein 695952 3230713 CJE0761 Campylobacter jejuni RM1221 hypothetical protein YP_178770.1 695404 R 195099 CDS YP_178771.1 57236970 3230714 complement(696341..697051) 1 NC_003912.7 hypothetical protein 697051 3230714 CJE0762 Campylobacter jejuni RM1221 hypothetical protein YP_178771.1 696341 R 195099 CDS YP_178772.1 57236971 3230715 complement(697038..697913) 1 NC_003912.7 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 697913 era 3230715 era Campylobacter jejuni RM1221 GTP-binding protein Era YP_178772.1 697038 R 195099 CDS YP_178773.1 57236972 3230716 complement(697910..699229) 1 NC_003912.7 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 699229 hslU 3230716 hslU Campylobacter jejuni RM1221 ATP-dependent protease ATP-binding subunit HslU YP_178773.1 697910 R 195099 CDS YP_178774.1 57236973 3230717 complement(699226..699768) 1 NC_003912.7 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 699768 hslV 3230717 hslV Campylobacter jejuni RM1221 ATP-dependent protease peptidase subunit YP_178774.1 699226 R 195099 CDS YP_178775.1 57236974 3230718 complement(699768..700211) 1 NC_003912.7 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 700211 rplI 3230718 rplI Campylobacter jejuni RM1221 50S ribosomal protein L9 YP_178775.1 699768 R 195099 CDS YP_178776.1 57236975 3230719 complement(700224..701444) 1 NC_003912.7 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 701444 argG 3230719 argG Campylobacter jejuni RM1221 argininosuccinate synthase YP_178776.1 700224 R 195099 CDS YP_178777.1 57236976 3230720 701600..701845 1 NC_003912.7 identified by similarity to OMNI:NTL03CP2478; match to protein family HMM PF01479; S4 domain-containing protein 701845 3230720 CJE0768 Campylobacter jejuni RM1221 S4 domain-containing protein YP_178777.1 701600 D 195099 CDS YP_178778.1 57236977 3230721 701842..702249 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00650; match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 702249 3230721 CJE0769 Campylobacter jejuni RM1221 hypothetical protein YP_178778.1 701842 D 195099 CDS YP_178779.1 57236978 3230722 702233..702970 1 NC_003912.7 identified by similarity to OMNI:NMB0356; match to protein family HMM PF00005; ABC transporter ATP-binding protein 702970 3230722 CJE0770 Campylobacter jejuni RM1221 ABC transporter ATP-binding protein YP_178779.1 702233 D 195099 CDS YP_178780.1 57236979 3230723 702970..704220 1 NC_003912.7 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 704220 rpoN 3230723 rpoN Campylobacter jejuni RM1221 RNA polymerase factor sigma-54 YP_178780.1 702970 D 195099 CDS YP_178781.1 57236980 3230724 704384..705808 1 NC_003912.7 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 705808 dcuB 3230724 dcuB Campylobacter jejuni RM1221 anaerobic C4-dicarboxylate transporter YP_178781.1 704384 D 195099 CDS YP_178782.1 57236981 3230725 705950..706063 1 NC_003912.7 hypothetical protein 706063 3230725 CJE0773 Campylobacter jejuni RM1221 hypothetical protein YP_178782.1 705950 D 195099 CDS YP_178783.1 57236982 3230728 709917..710525 1 NC_003912.7 identified by similarity to SP:P03961; match to protein family HMM PF02669; match to protein family HMM TIGR00681; potassium-transporting ATPase, C subunit 710525 3230728 CJE0776 Campylobacter jejuni RM1221 potassium-transporting ATPase, C subunit YP_178783.1 709917 D 195099 CDS YP_178784.1 57236983 3230730 complement(712327..714300) 1 NC_003912.7 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 714300 uvrB 3230730 uvrB Campylobacter jejuni RM1221 excinuclease ABC subunit B YP_178784.1 712327 R 195099 CDS YP_178785.1 57236984 3230731 714454..714684 1 NC_003912.7 identified by similarity to OMNI:HP0385; hypothetical protein 714684 3230731 CJE0779 Campylobacter jejuni RM1221 hypothetical protein YP_178785.1 714454 D 195099 CDS YP_178786.1 57236985 3230732 714674..714916 1 NC_003912.7 identified by similarity to OMNI:NTL02ST2131; hypothetical protein 714916 3230732 CJE0780 Campylobacter jejuni RM1221 hypothetical protein YP_178786.1 714674 D 195099 CDS YP_178787.1 57236986 3230733 714913..715350 1 NC_003912.7 hypothetical protein 715350 3230733 CJE0781 Campylobacter jejuni RM1221 hypothetical protein YP_178787.1 714913 D 195099 CDS YP_178788.1 57236987 3230734 715332..717185 1 NC_003912.7 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 717185 priA 3230734 priA Campylobacter jejuni RM1221 primosome assembly protein PriA YP_178788.1 715332 D 195099 CDS YP_178789.1 57236988 3230735 complement(717195..718592) 1 NC_003912.7 identified by similarity to GB:AAD50522.1; invasion phenotype protein 718592 3230735 CJE0783 Campylobacter jejuni RM1221 invasion phenotype protein YP_178789.1 717195 R 195099 CDS YP_178790.1 57236989 3230736 718738..719811 1 NC_003912.7 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 719811 ispG 3230736 ispG Campylobacter jejuni RM1221 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_178790.1 718738 D 195099 CDS YP_178791.1 57236990 3230737 complement(719841..720539) 1 NC_003912.7 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 720539 flgH 3230737 flgH Campylobacter jejuni RM1221 flagellar basal body L-ring protein YP_178791.1 719841 R 195099 CDS YP_178792.1 57236991 3230738 720629..722134 1 NC_003912.7 identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651; phosphate acetyltransferase 722134 pta 3230738 pta Campylobacter jejuni RM1221 phosphate acetyltransferase YP_178792.1 720629 D 195099 CDS YP_178793.1 57236992 3230739 722148..723338 1 NC_003912.7 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 723338 ackA 3230739 ackA Campylobacter jejuni RM1221 acetate kinase YP_178793.1 722148 D 195099 CDS YP_178794.1 57236993 3230740 complement(723366..727118) 1 NC_003912.7 identified by similarity to OMNI:BBE02; match to protein family HMM PF04313; match to protein family HMM TIGR01612; hypothetical protein 727118 3230740 CJE0789 Campylobacter jejuni RM1221 hypothetical protein YP_178794.1 723366 R 195099 CDS YP_178795.1 57236994 3230741 727268..727759 1 NC_003912.7 hypothetical protein 727759 3230741 CJE0790 Campylobacter jejuni RM1221 hypothetical protein YP_178795.1 727268 D 195099 CDS YP_178796.1 57236995 3230742 complement(727747..728685) 1 NC_003912.7 hypothetical protein 728685 3230742 CJE0791 Campylobacter jejuni RM1221 hypothetical protein YP_178796.1 727747 R 195099 CDS YP_178797.1 57236996 3230743 complement(728685..729617) 1 NC_003912.7 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 729617 mraW 3230743 mraW Campylobacter jejuni RM1221 S-adenosyl-methyltransferase MraW YP_178797.1 728685 R 195099 CDS YP_178798.1 57236997 3230744 729782..731272 1 NC_003912.7 identified by similarity to SP:P77241; peptidyl-prolyl cis-trans isomerase D,-like protein 731272 3230744 CJE0793 Campylobacter jejuni RM1221 peptidyl-prolyl cis-trans isomerase D,-like protein YP_178798.1 729782 D 195099 CDS YP_178799.1 57236998 3230745 731275..732657 1 NC_003912.7 identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 732657 ftsA 3230745 ftsA Campylobacter jejuni RM1221 cell division protein FtsA YP_178799.1 731275 D 195099 CDS YP_178800.1 57236999 3230746 732673..733785 1 NC_003912.7 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 733785 ftsZ 3230746 ftsZ Campylobacter jejuni RM1221 cell division protein FtsZ YP_178800.1 732673 D 195099 CDS YP_178801.1 57237000 3230747 733941..734753 1 NC_003912.7 identified by similarity to SP:P39752; match to protein family HMM PF00460; flagellar basal-body rod protein 734753 3230747 CJE0796 Campylobacter jejuni RM1221 flagellar basal-body rod protein YP_178801.1 733941 D 195099 CDS YP_178802.1 57237001 3230748 734782..735573 1 NC_003912.7 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 735573 flgG 3230748 flgG Campylobacter jejuni RM1221 flagellar basal body rod protein FlgG YP_178802.1 734782 D 195099 CDS YP_178803.1 57237002 3230749 complement(735639..737069) 1 NC_003912.7 identified by similarity to SP:P06711; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 737069 glnA 3230749 glnA Campylobacter jejuni RM1221 glutamine synthetase, type I YP_178803.1 735639 R 195099 CDS YP_178804.1 57238721 3232509 complement(737158..737280) 1 NC_003912.7 hypothetical protein 737280 3232509 CJE0799 Campylobacter jejuni RM1221 hypothetical protein YP_178804.1 737158 R 195099 CDS YP_178805.1 57237003 3230750 737272..737967 1 NC_003912.7 identified by similarity to OMNI:HP0170; hypothetical protein 737967 3230750 CJE0800 Campylobacter jejuni RM1221 hypothetical protein YP_178805.1 737272 D 195099 CDS YP_178806.1 57237004 3230751 737964..739217 1 NC_003912.7 identified by similarity to SP:P76403; match to protein family HMM PF01136; U32 family peptidase 739217 3230751 CJE0801 Campylobacter jejuni RM1221 U32 family peptidase YP_178806.1 737964 D 195099 CDS YP_178807.1 57237005 3230752 739218..739712 1 NC_003912.7 Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit 739712 purE 3230752 purE Campylobacter jejuni RM1221 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_178807.1 739218 D 195099 CDS YP_178808.1 57237006 3230754 740270..741133 1 NC_003912.7 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 741133 glyQ 3230754 glyQ Campylobacter jejuni RM1221 glycyl-tRNA synthetase subunit alpha YP_178808.1 740270 D 195099 CDS YP_178809.1 57237007 3230755 741120..741845 1 NC_003912.7 identified by similarity to SP:O25613; match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein 741845 3230755 CJE0805 Campylobacter jejuni RM1221 hypothetical protein YP_178809.1 741120 D 195099 CDS YP_178810.1 57237008 3230756 741855..742571 1 NC_003912.7 identified by similarity to OMNI:HP0958; match to protein family HMM PF02591; hypothetical protein 742571 3230756 CJE0806 Campylobacter jejuni RM1221 hypothetical protein YP_178810.1 741855 D 195099 CDS YP_178811.1 57237009 3230757 742568..743725 1 NC_003912.7 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 743725 waaA 3230757 waaA Campylobacter jejuni RM1221 3-deoxy-D-manno-octulosonic-acid transferase YP_178811.1 742568 D 195099 CDS YP_178812.1 57237010 3230758 743706..744458 1 NC_003912.7 identified by match to protein family HMM PF00849; RNA pseudouridylate synthase 744458 3230758 CJE0808 Campylobacter jejuni RM1221 RNA pseudouridylate synthase YP_178812.1 743706 D 195099 CDS YP_178813.1 57237011 3230759 744526..745863 1 NC_003912.7 identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 745863 ffh 3230759 ffh Campylobacter jejuni RM1221 signal recognition particle protein YP_178813.1 744526 D 195099 CDS YP_178814.1 57237012 3230760 745929..746156 1 NC_003912.7 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 746156 rpsP 3230760 rpsP Campylobacter jejuni RM1221 30S ribosomal protein S16 YP_178814.1 745929 D 195099 CDS YP_178815.1 57237013 3230761 746159..746401 1 NC_003912.7 identified by similarity to OMNI:HP1150; hypothetical protein 746401 3230761 CJE0811 Campylobacter jejuni RM1221 hypothetical protein YP_178815.1 746159 D 195099 CDS YP_178816.1 57237014 3230762 746394..746933 1 NC_003912.7 identified by similarity to SP:P21504; match to protein family HMM PF01782; match to protein family HMM PF05239; 16S rRNA processing protein RimM 746933 rimM 3230762 rimM Campylobacter jejuni RM1221 16S rRNA processing protein RimM YP_178816.1 746394 D 195099 CDS YP_178817.1 57237015 3230763 746930..747634 1 NC_003912.7 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 747634 trmD 3230763 trmD Campylobacter jejuni RM1221 tRNA (guanine-N(1)-)-methyltransferase YP_178817.1 746930 D 195099 CDS YP_178818.1 57237016 3230764 747645..748001 1 NC_003912.7 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 748001 rplS 3230764 rplS Campylobacter jejuni RM1221 50S ribosomal protein L19 YP_178818.1 747645 D 195099 CDS YP_178819.1 57237017 3230765 748135..748548 1 NC_003912.7 identified by match to protein family HMM PF00576; transthyretin-like protein 748548 3230765 CJE0815 Campylobacter jejuni RM1221 transthyretin-like protein YP_178819.1 748135 D 195099 CDS YP_178820.1 57237018 3230766 748572..749912 1 NC_003912.7 identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358; 3-deoxy-7-phosphoheptulonate synthase 749912 3230766 CJE0816 Campylobacter jejuni RM1221 3-deoxy-7-phosphoheptulonate synthase YP_178820.1 748572 D 195099 CDS YP_178821.1 57237019 3230767 749909..750238 1 NC_003912.7 identified by match to protein family HMM PF03960; hypothetical protein 750238 3230767 CJE0817 Campylobacter jejuni RM1221 hypothetical protein YP_178821.1 749909 D 195099 CDS YP_178822.1 57237020 3230768 750686..754288 1 NC_003912.7 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 754288 dnaE 3230768 dnaE Campylobacter jejuni RM1221 DNA polymerase III subunit alpha YP_178822.1 750686 D 195099 CDS YP_178823.1 57237021 3230769 complement(754300..754932) 1 NC_003912.7 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 754932 3230769 CJE0819 Campylobacter jejuni RM1221 hypothetical protein YP_178823.1 754300 R 195099 CDS YP_178824.1 57237022 3230770 complement(754967..755716) 1 NC_003912.7 identified by similarity to GP:1857639; match to protein family HMM PF00669; flagellin subunit protein FlaC 755716 flaC 3230770 flaC Campylobacter jejuni RM1221 flagellin subunit protein FlaC YP_178824.1 754967 R 195099 CDS YP_178825.1 57237023 3230771 complement(755755..756225) 1 NC_003912.7 identified by similarity to PIR:B71953; hypothetical protein 756225 3230771 CJE0821 Campylobacter jejuni RM1221 hypothetical protein YP_178825.1 755755 R 195099 CDS YP_178826.1 57237024 3230772 complement(756238..757053) 1 NC_003912.7 identified by match to protein family HMM TIGR00536; HemK family modification methylase 757053 3230772 CJE0822 Campylobacter jejuni RM1221 HemK family modification methylase YP_178826.1 756238 R 195099 CDS YP_178827.1 57237025 3230773 complement(757050..758237) 1 NC_003912.7 identified by match to protein family HMM PF01435; M48 family peptidase 758237 3230773 CJE0823 Campylobacter jejuni RM1221 M48 family peptidase YP_178827.1 757050 R 195099 CDS YP_178828.1 57237026 3230774 758364..758549 1 NC_003912.7 hypothetical protein 758549 3230774 CJE0824 Campylobacter jejuni RM1221 hypothetical protein YP_178828.1 758364 D 195099 CDS YP_178829.1 57237027 3230775 complement(758546..759088) 1 NC_003912.7 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 759088 mogA 3230775 mogA Campylobacter jejuni RM1221 molybdenum cofactor biosynthesis protein MogA YP_178829.1 758546 R 195099 CDS YP_178830.1 57237028 3230776 complement(759109..760092) 1 NC_003912.7 identified by similarity to SP:P27841; match to protein family HMM PF01544; match to protein family HMM TIGR00383; magnesium and cobalt transport protein CorA 760092 corA 3230776 corA Campylobacter jejuni RM1221 magnesium and cobalt transport protein CorA YP_178830.1 759109 R 195099 CDS YP_178831.1 57237029 3230777 760209..761255 1 NC_003912.7 identified by similarity to SP:P06997; match to protein family HMM PF01547; ABC transporter periplasmic substrate-binding protein 761255 3230777 CJE0827 Campylobacter jejuni RM1221 ABC transporter periplasmic substrate-binding protein YP_178831.1 760209 D 195099 CDS YP_178832.1 57237030 3230778 761266..762591 1 NC_003912.7 identified by similarity to OMNI:NTL01YP3429; hypothetical protein 762591 3230778 CJE0828 Campylobacter jejuni RM1221 hypothetical protein YP_178832.1 761266 D 195099 CDS YP_178833.1 57237031 3230779 762591..763397 1 NC_003912.7 identified by similarity to OMNI:NTL03PA03251; hypothetical protein 763397 3230779 CJE0829 Campylobacter jejuni RM1221 hypothetical protein YP_178833.1 762591 D 195099 CDS YP_178834.1 57237032 3230780 763394..764233 1 NC_003912.7 identified by match to protein family HMM PF00528; ABC transporter permease 764233 3230780 CJE0830 Campylobacter jejuni RM1221 ABC transporter permease YP_178834.1 763394 D 195099 CDS YP_178835.1 57237033 3230781 764234..765013 1 NC_003912.7 identified by match to protein family HMM PF00528; ABC transporter permease 765013 3230781 CJE0831 Campylobacter jejuni RM1221 ABC transporter permease YP_178835.1 764234 D 195099 CDS YP_178836.1 57237034 3230782 765054..766007 1 NC_003912.7 identified by similarity to PIR:G75124; match to protein family HMM PF00005; ABC transporter ATP-binding protein 766007 3230782 CJE0832 Campylobacter jejuni RM1221 ABC transporter ATP-binding protein YP_178836.1 765054 D 195099 CDS YP_178837.1 57237035 3230783 766004..766642 1 NC_003912.7 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase 766642 3230783 CJE0833 Campylobacter jejuni RM1221 HAD family hydrolase YP_178837.1 766004 D 195099 CDS YP_178838.1 57237036 3230784 complement(766666..767421) 1 NC_003912.7 identified by similarity to SP:Q46125; match to protein family HMM PF00497; CjaC 767421 cjaC 3230784 cjaC Campylobacter jejuni RM1221 CjaC YP_178838.1 766666 R 195099 CDS YP_178839.1 57237037 3230785 767754..768371 1 NC_003912.7 hypothetical protein 768371 3230785 CJE0835 Campylobacter jejuni RM1221 hypothetical protein YP_178839.1 767754 D 195099 CDS YP_178840.1 57237038 3230787 770335..770754 1 NC_003912.7 identified by similarity to OMNI:NTL03PA04082; match to protein family HMM PF05860; match to protein family HMM TIGR01901; hemagglutination domain-containing protein 770754 3230787 CJE0837 Campylobacter jejuni RM1221 hemagglutination domain-containing protein YP_178840.1 770335 D 195099 CDS YP_178841.1 57237039 3230788 771027..771983 1 NC_003912.7 hypothetical protein 771983 3230788 CJE0838 Campylobacter jejuni RM1221 hypothetical protein YP_178841.1 771027 D 195099 CDS YP_178842.1 57237040 3230789 772064..772414 1 NC_003912.7 identified by similarity to GP:26453556; hypothetical protein 772414 3230789 CJE0839 Campylobacter jejuni RM1221 hypothetical protein YP_178842.1 772064 D 195099 CDS YP_178843.1 57237041 3230790 772510..772968 1 NC_003912.7 hypothetical protein 772968 3230790 CJE0840 Campylobacter jejuni RM1221 hypothetical protein YP_178843.1 772510 D 195099 CDS YP_178844.1 57237042 3230791 773449..773691 1 NC_003912.7 identified by similarity to SP:Q04593; hypothetical protein 773691 3230791 CJE0841 Campylobacter jejuni RM1221 hypothetical protein YP_178844.1 773449 D 195099 CDS YP_178845.1 57237043 3230792 773943..774164 1 NC_003912.7 identified by similarity to GP:9755165; hypothetical protein 774164 3230792 CJE0842 Campylobacter jejuni RM1221 hypothetical protein YP_178845.1 773943 D 195099 CDS YP_178846.1 57237044 3230793 774415..774669 1 NC_003912.7 hypothetical protein 774669 3230793 CJE0843 Campylobacter jejuni RM1221 hypothetical protein YP_178846.1 774415 D 195099 CDS YP_178847.1 57237599 3231358 complement(782888..783571) 1 NC_003912.7 identified by similarity to SP:O07650; match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB 783571 tonB 3231358 tonB Campylobacter jejuni RM1221 TonB YP_178847.1 782888 R 195099 CDS YP_178848.1 57237600 3231359 783641..783787 1 NC_003912.7 hypothetical protein 783787 3231359 CJE0846 Campylobacter jejuni RM1221 hypothetical protein YP_178848.1 783641 D 195099 CDS YP_178849.1 57237601 3231360 783895..785985 1 NC_003912.7 identified by similarity to GP:2199510; match to protein family HMM PF00593; ferric receptor CfrA 785985 cfrA 3231360 cfrA Campylobacter jejuni RM1221 ferric receptor CfrA YP_178849.1 783895 D 195099 CDS YP_178850.1 57237602 3231361 786287..787081 1 NC_003912.7 Acts as a negative regulator of the grpE-dnaK-dnaJ and groELS class I heat shock operons by preventing heat-shock induction; heat-inducible transcription repressor 787081 hrcA 3231361 hrcA Campylobacter jejuni RM1221 heat-inducible transcription repressor YP_178850.1 786287 D 195099 CDS YP_178851.1 57237603 3231362 787078..787605 1 NC_003912.7 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 787605 grpE 3231362 grpE Campylobacter jejuni RM1221 heat shock protein GrpE YP_178851.1 787078 D 195099 CDS YP_178852.1 57237604 3231363 787627..789498 1 NC_003912.7 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 789498 dnaK 3231363 dnaK Campylobacter jejuni RM1221 molecular chaperone DnaK YP_178852.1 787627 D 195099 CDS YP_178853.1 57237605 3231364 789818..790780 1 NC_003912.7 identified by similarity to OMNI:NTL01XA0250; hypothetical protein 790780 3231364 CJE0851 Campylobacter jejuni RM1221 hypothetical protein YP_178853.1 789818 D 195099 CDS YP_178854.1 57237606 3231365 790850..791191 1 NC_003912.7 identified by similarity to OMNI:HP0902; hypothetical protein 791191 3231365 CJE0852 Campylobacter jejuni RM1221 hypothetical protein YP_178854.1 790850 D 195099 CDS YP_178855.1 57237607 3231366 complement(791252..792421) 1 NC_003912.7 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 792421 aspC 3231366 aspC Campylobacter jejuni RM1221 aspartate aminotransferase YP_178855.1 791252 R 195099 CDS YP_178856.1 57237608 3231367 complement(792594..793232) 1 NC_003912.7 identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase 793232 cysE 3231367 cysE Campylobacter jejuni RM1221 serine acetyltransferase YP_178856.1 792594 R 195099 CDS YP_178857.1 57237609 3231368 complement(793233..795068) 1 NC_003912.7 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 795068 speA 3231368 speA Campylobacter jejuni RM1221 arginine decarboxylase YP_178857.1 793233 R 195099 CDS YP_178858.1 57237610 3231369 complement(795065..796291) 1 NC_003912.7 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 796291 hisS 3231369 hisS Campylobacter jejuni RM1221 histidyl-tRNA synthetase YP_178858.1 795065 R 195099 CDS YP_178859.1 57237611 3231370 complement(796288..796866) 1 NC_003912.7 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 796866 tmk 3231370 tmk Campylobacter jejuni RM1221 thymidylate kinase YP_178859.1 796288 R 195099 CDS YP_178860.1 57237612 3231371 complement(796857..797333) 1 NC_003912.7 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 797333 coaD 3231371 coaD Campylobacter jejuni RM1221 phosphopantetheine adenylyltransferase YP_178860.1 796857 R 195099 CDS YP_178861.1 57237613 3231372 complement(797373..797936) 1 NC_003912.7 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 797936 3231372 CJE0859 Campylobacter jejuni RM1221 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_178861.1 797373 R 195099 CDS YP_178862.1 57237614 3231373 complement(797933..798595) 1 NC_003912.7 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 798595 flgA 3231373 flgA Campylobacter jejuni RM1221 flagellar basal body P-ring biosynthesis protein FlgA YP_178862.1 797933 R 195099 CDS YP_178863.1 57237615 3231374 complement(798679..799455) 1 NC_003912.7 identified by similarity to OMNI:PP0112; match to protein family HMM PF03180; NLPA family lipoprotein 799455 3231374 CJE0861 Campylobacter jejuni RM1221 NLPA family lipoprotein YP_178863.1 798679 R 195099 CDS YP_178864.1 57237616 3231375 complement(799465..800235) 1 NC_003912.7 identified by similarity to GP:28203472; match to protein family HMM PF03180; NLPA family lipoprotein 800235 3231375 CJE0862 Campylobacter jejuni RM1221 NLPA family lipoprotein YP_178864.1 799465 R 195099 CDS YP_178865.1 57237617 3231376 complement(800284..801057) 1 NC_003912.7 identified by similarity to OMNI:NTL01FN1234; match to protein family HMM PF03180; NLPA family lipoprotein 801057 3231376 CJE0863 Campylobacter jejuni RM1221 NLPA family lipoprotein YP_178865.1 800284 R 195099 CDS YP_178866.1 57237618 3231377 complement(801247..802158) 1 NC_003912.7 identified by similarity to OMNI:NTL01CA0974; match to protein family HMM PF00528; ABC transporter permease 802158 3231377 CJE0864 Campylobacter jejuni RM1221 ABC transporter permease YP_178866.1 801247 R 195099 CDS YP_178867.1 57237619 3231378 complement(802155..803165) 1 NC_003912.7 identified by similarity to GB:AAO35916.1; match to protein family HMM PF00005; ABC transporter ATP-binding protein 803165 3231378 CJE0865 Campylobacter jejuni RM1221 ABC transporter ATP-binding protein YP_178867.1 802155 R 195099 CDS YP_178868.1 57237620 3231379 complement(803170..805782) 1 NC_003912.7 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 805782 valS 3231379 valS Campylobacter jejuni RM1221 valyl-tRNA synthetase YP_178868.1 803170 R 195099 CDS YP_178869.1 57237621 3231380 complement(805805..806824) 1 NC_003912.7 hypothetical protein 806824 3231380 CJE0867 Campylobacter jejuni RM1221 hypothetical protein YP_178869.1 805805 R 195099 CDS YP_178870.1 57237622 3231381 806953..808983 1 NC_003912.7 identified by similarity to SP:P03018; match to protein family HMM PF00580; ATP-dependent DNA helicase 808983 3231381 CJE0868 Campylobacter jejuni RM1221 ATP-dependent DNA helicase YP_178870.1 806953 D 195099 CDS YP_178871.1 57237623 3231382 809024..809764 1 NC_003912.7 identified by similarity to GP:558481; similarity to PIR:B41161; major antigenic peptide PEB2 809764 3231382 CJE0869 Campylobacter jejuni RM1221 major antigenic peptide PEB2 YP_178871.1 809024 D 195099 CDS YP_178872.1 57237624 3231383 809863..810390 1 NC_003912.7 identified by similarity to SP:P37901; match to protein family HMM PF00578; thiol peroxidase 810390 tpx 3231383 tpx Campylobacter jejuni RM1221 thiol peroxidase YP_178872.1 809863 D 195099 CDS YP_178873.1 57237625 3231384 810637..813411 1 NC_003912.7 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 813411 napA 3231384 napA Campylobacter jejuni RM1221 nitrate reductase catalytic subunit YP_178873.1 810637 D 195099 CDS YP_178874.1 57237626 3231385 813429..814169 1 NC_003912.7 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 814169 napG 3231385 napG Campylobacter jejuni RM1221 quinol dehydrogenase periplasmic component YP_178874.1 813429 D 195099 CDS YP_178875.1 57237627 3231386 814169..814948 1 NC_003912.7 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 814948 napH 3231386 napH Campylobacter jejuni RM1221 quinol dehydrogenase membrane component YP_178875.1 814169 D 195099 CDS YP_178876.1 57237628 3231387 814948..815469 1 NC_003912.7 identified by similarity to SP:P39186; match to protein family HMM PF03892; periplasmic nitrate reductase, small subunit 815469 napB 3231387 napB Campylobacter jejuni RM1221 periplasmic nitrate reductase, small subunit YP_178876.1 814948 D 195099 CDS YP_178877.1 57237629 3231388 815474..816388 1 NC_003912.7 NapL 816388 napL 3231388 napL Campylobacter jejuni RM1221 NapL YP_178877.1 815474 D 195099 CDS YP_178878.1 57237630 3231389 816381..816719 1 NC_003912.7 identified by similarity to SP:P33938; match to protein family HMM PF03927; NapD 816719 napD 3231389 napD Campylobacter jejuni RM1221 NapD YP_178878.1 816381 D 195099 CDS YP_178879.1 57237631 3231390 816732..816905 1 NC_003912.7 hypothetical protein 816905 3231390 CJE0877 Campylobacter jejuni RM1221 hypothetical protein YP_178879.1 816732 D 195099 CDS YP_178880.1 57237632 3231391 816987..817232 1 NC_003912.7 identified by similarity to OMNI:HP0168; hypothetical protein 817232 3231391 CJE0878 Campylobacter jejuni RM1221 hypothetical protein YP_178880.1 816987 D 195099 CDS YP_178881.1 57237633 3231392 817229..817720 1 NC_003912.7 identified by similarity to OMNI:HP0167; hypothetical protein 817720 3231392 CJE0879 Campylobacter jejuni RM1221 hypothetical protein YP_178881.1 817229 D 195099 CDS YP_178882.1 57237634 3231393 817776..818807 1 NC_003912.7 identified by match to protein family HMM PF01743; polyA polymerase 818807 3231393 CJE0880 Campylobacter jejuni RM1221 polyA polymerase YP_178882.1 817776 D 195099 CDS YP_178883.1 57237635 3231394 818804..819628 1 NC_003912.7 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 819628 purU 3231394 purU Campylobacter jejuni RM1221 formyltetrahydrofolate deformylase YP_178883.1 818804 D 195099 CDS YP_178884.1 57237636 3231395 complement(819625..820893) 1 NC_003912.7 aminotransferase 820893 3231395 CJE0882 Campylobacter jejuni RM1221 aminotransferase YP_178884.1 819625 R 195099 CDS YP_178885.1 57237637 3231396 820935..821813 1 NC_003912.7 identified by similarity to GB:AAL94332.1; match to protein family HMM PF03008; hypothetical protein 821813 3231396 CJE0883 Campylobacter jejuni RM1221 hypothetical protein YP_178885.1 820935 D 195099 CDS YP_178886.1 57237638 3231397 821817..822836 1 NC_003912.7 identified by similarity to GP:13359310; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 822836 3231397 CJE0884 Campylobacter jejuni RM1221 sensor histidine kinase YP_178886.1 821817 D 195099 CDS YP_178887.1 57237639 3231398 822935..824239 1 NC_003912.7 hypothetical protein 824239 3231398 CJE0885 Campylobacter jejuni RM1221 hypothetical protein YP_178887.1 822935 D 195099 CDS YP_178888.1 57237640 3231399 complement(824297..825724) 1 NC_003912.7 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; Mur ligase 825724 3231399 CJE0886 Campylobacter jejuni RM1221 Mur ligase YP_178888.1 824297 R 195099 CDS YP_178889.1 57237641 3231400 complement(825725..826444) 1 NC_003912.7 identified by similarity to OMNI:HP0739; hypothetical protein 826444 3231400 CJE0887 Campylobacter jejuni RM1221 hypothetical protein YP_178889.1 825725 R 195099 CDS YP_178890.1 57237642 3231401 complement(826446..826661) 1 NC_003912.7 identified by match to protein family HMM TIGR01552; prevent-host-death family protein 826661 3231401 CJE0888 Campylobacter jejuni RM1221 prevent-host-death family protein YP_178890.1 826446 R 195099 CDS YP_178891.1 57237643 3231402 complement(826721..827761) 1 NC_003912.7 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 827761 ddl 3231402 ddl Campylobacter jejuni RM1221 D-alanyl-alanine synthetase A YP_178891.1 826721 R 195099 CDS YP_178892.1 57237644 3231403 complement(827771..828322) 1 NC_003912.7 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 828322 ruvA 3231403 ruvA Campylobacter jejuni RM1221 Holliday junction DNA helicase RuvA YP_178892.1 827771 R 195099 CDS YP_178893.1 57237645 3231404 complement(828298..830157) 1 NC_003912.7 identified by similarity to OMNI:HP0884; hypothetical protein 830157 3231404 CJE0891 Campylobacter jejuni RM1221 hypothetical protein YP_178893.1 828298 R 195099 CDS YP_178894.1 57237646 3231405 830261..831712 1 NC_003912.7 identified by similarity to SP:O25551; match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 831712 mviN 3231405 mviN Campylobacter jejuni RM1221 integral membrane protein MviN YP_178894.1 830261 D 195099 CDS YP_178895.1 57237647 3231406 831712..833100 1 NC_003912.7 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 833100 cysS 3231406 cysS Campylobacter jejuni RM1221 cysteinyl-tRNA synthetase YP_178895.1 831712 D 195099 CDS YP_178896.1 57237648 3231407 833093..834835 1 NC_003912.7 identified by similarity to SP:P27299; match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease MsbA 834835 3231407 CJE0894 Campylobacter jejuni RM1221 ABC transporter ATP-binding protein/permease MsbA YP_178896.1 833093 D 195099 CDS YP_178897.1 57237649 3231408 834867..835925 1 NC_003912.7 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 835925 pyrD 3231408 pyrD Campylobacter jejuni RM1221 dihydroorotate dehydrogenase 2 YP_178897.1 834867 D 195099 CDS YP_178898.1 57237650 3231409 835922..837172 1 NC_003912.7 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 837172 3231409 CJE0896 Campylobacter jejuni RM1221 M16 family peptidase YP_178898.1 835922 D 195099 CDS YP_178899.1 57237651 3231410 837165..838061 1 NC_003912.7 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 838061 dapA 3231410 dapA Campylobacter jejuni RM1221 dihydrodipicolinate synthase YP_178899.1 837165 D 195099 CDS YP_178900.1 57237652 3231411 838061..838840 1 NC_003912.7 Acts on the hydroxyl group at position 7 of the steroid frame; 7-alpha-hydroxysteroid dehydrogenase 838840 3231411 CJE0898 Campylobacter jejuni RM1221 7-alpha-hydroxysteroid dehydrogenase YP_178900.1 838061 D 195099 CDS YP_178901.1 57237653 3231412 complement(838881..839186) 1 NC_003912.7 hypothetical protein 839186 3231412 CJE0899 Campylobacter jejuni RM1221 hypothetical protein YP_178901.1 838881 R 195099 CDS YP_178902.1 57237654 3231413 complement(839198..839794) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00742; match to protein family HMM PF00753; metallo-beta-lactamase 839794 3231413 CJE0900 Campylobacter jejuni RM1221 metallo-beta-lactamase YP_178902.1 839198 R 195099 CDS YP_178903.1 57237655 3231414 839868..840608 1 NC_003912.7 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 840608 nadE 3231414 nadE Campylobacter jejuni RM1221 NAD synthetase YP_178903.1 839868 D 195099 CDS YP_178904.1 57237656 3231415 840612..841538 1 NC_003912.7 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 841538 lpxK 3231415 lpxK Campylobacter jejuni RM1221 tetraacyldisaccharide 4'-kinase YP_178904.1 840612 D 195099 CDS YP_178905.1 57237657 3231416 841535..842947 1 NC_003912.7 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 842947 thrC 3231416 thrC Campylobacter jejuni RM1221 threonine synthase YP_178905.1 841535 D 195099 CDS YP_178906.1 57237658 3231417 842944..843663 1 NC_003912.7 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 843663 kdsB 3231417 kdsB Campylobacter jejuni RM1221 3-deoxy-manno-octulosonate cytidylyltransferase YP_178906.1 842944 D 195099 CDS YP_178907.1 57237659 3231418 843750..844997 1 NC_003912.7 hypothetical protein 844997 3231418 CJE0905 Campylobacter jejuni RM1221 hypothetical protein YP_178907.1 843750 D 195099 CDS YP_178908.1 57237660 3231419 845091..845861 1 NC_003912.7 identified by similarity to SP:P10344; similarity to SP:P30859; match to protein family HMM PF00497; amino acid-binding protein 845861 3231419 CJE0906 Campylobacter jejuni RM1221 amino acid-binding protein YP_178908.1 845091 D 195099 CDS YP_178909.1 57237661 3231420 complement(845877..846611) 1 NC_003912.7 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 846611 fliP 3231420 fliP Campylobacter jejuni RM1221 flagellar biosynthesis protein FliP YP_178909.1 845877 R 195099 CDS YP_178910.1 57237662 3231421 846755..848044 1 NC_003912.7 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 848044 glmU 3231421 glmU Campylobacter jejuni RM1221 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_178910.1 846755 D 195099 CDS YP_178911.1 57237663 3231422 848041..849195 1 NC_003912.7 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 849195 coaBC 3231422 coaBC Campylobacter jejuni RM1221 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_178911.1 848041 D 195099 CDS YP_178912.1 57237664 3231423 849198..849809 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00773; hypothetical protein 849809 3231423 CJE0910 Campylobacter jejuni RM1221 hypothetical protein YP_178912.1 849198 D 195099 CDS YP_178913.1 57237665 3231424 849813..850481 1 NC_003912.7 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase 850481 uppS 3231424 uppS Campylobacter jejuni RM1221 undecaprenyl diphosphate synthase YP_178913.1 849813 D 195099 CDS YP_178914.1 57237666 3231425 850478..851254 1 NC_003912.7 identified by similarity to SP:P27717; match to protein family HMM PF01478; A24 family peptidase 851254 3231425 CJE0912 Campylobacter jejuni RM1221 A24 family peptidase YP_178914.1 850478 D 195099 CDS YP_178915.1 57237667 3231426 851254..852279 1 NC_003912.7 identified by similarity to OMNI:NTL01HP01010; match to protein family HMM PF03739; hypothetical protein 852279 3231426 CJE0913 Campylobacter jejuni RM1221 hypothetical protein YP_178915.1 851254 D 195099 CDS YP_178916.1 57237668 3231427 852279..853001 1 NC_003912.7 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 853001 truA 3231427 truA Campylobacter jejuni RM1221 tRNA pseudouridine synthase A YP_178916.1 852279 D 195099 CDS YP_178917.1 57237669 3231428 complement(852998..854209) 1 NC_003912.7 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 854209 ilvA 3231428 ilvA Campylobacter jejuni RM1221 threonine dehydratase YP_178917.1 852998 R 195099 CDS YP_178918.1 57237670 3231429 complement(854209..854622) 1 NC_003912.7 identified by similarity to OMNI:EF1616; match to protein family HMM PF02629; CoA-binding domain-containing protein 854622 3231429 CJE0916 Campylobacter jejuni RM1221 CoA-binding domain-containing protein YP_178918.1 854209 R 195099 CDS YP_178919.1 57237671 3231430 854741..855157 1 NC_003912.7 identified by similarity to GB:AAP76762.1; match to protein family HMM PF04323; hypothetical protein 855157 3231430 CJE0917 Campylobacter jejuni RM1221 hypothetical protein YP_178919.1 854741 D 195099 CDS YP_178920.1 57237672 3231431 complement(855144..856217) 1 NC_003912.7 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 856217 trmA 3231431 trmA Campylobacter jejuni RM1221 tRNA (uracil-5-)-methyltransferase YP_178920.1 855144 R 195099 CDS YP_178921.1 57237673 3231432 complement(856214..857947) 1 NC_003912.7 identified by similarity to GP:28202739; match to protein family HMM PF03553; Na+/H+ antiporter family protein 857947 3231432 CJE0919 Campylobacter jejuni RM1221 Na+/H+ antiporter family protein YP_178921.1 856214 R 195099 CDS YP_178922.1 57237674 3231433 complement(857944..858693) 1 NC_003912.7 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 858693 3231433 CJE0920 Campylobacter jejuni RM1221 short chain dehydrogenase/reductase family oxidoreductase YP_178922.1 857944 R 195099 CDS YP_178923.1 57237675 3231434 complement(858690..859928) 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ00787; match to protein family HMM PF00023; ankyrin 859928 3231434 CJE0921 Campylobacter jejuni RM1221 ankyrin YP_178923.1 858690 R 195099 CDS YP_178924.1 57237676 3231435 complement(859988..862534) 1 NC_003912.7 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 862534 acnB 3231435 acnB Campylobacter jejuni RM1221 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_178924.1 859988 R 195099 CDS YP_178925.1 57237677 3231436 862589..863041 1 NC_003912.7 identified by similarity to SP:P11742; match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine S-methyltransferase 863041 ogt 3231436 ogt Campylobacter jejuni RM1221 methylated-DNA--protein-cysteine S-methyltransferase YP_178925.1 862589 D 195099 CDS YP_178926.1 57237678 3231437 complement(863033..863974) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00959; hypothetical protein 863974 3231437 CJE0924 Campylobacter jejuni RM1221 hypothetical protein YP_178926.1 863033 R 195099 CDS YP_178927.1 57237679 3231438 complement(863978..865864) 1 NC_003912.7 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 865864 metG 3231438 metG Campylobacter jejuni RM1221 methionyl-tRNA synthetase YP_178927.1 863978 R 195099 CDS YP_178928.1 57237680 3231439 complement(865874..866071) 1 NC_003912.7 identified by similarity to OMNI:HP1384; hypothetical protein 866071 3231439 CJE0926 Campylobacter jejuni RM1221 hypothetical protein YP_178928.1 865874 R 195099 CDS YP_178929.1 57237681 3231440 complement(866064..866906) 1 NC_003912.7 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 866906 fbp 3231440 fbp Campylobacter jejuni RM1221 fructose-1,6-bisphosphatase YP_178929.1 866064 R 195099 CDS YP_178930.1 57237682 3231441 complement(866908..867399) 1 NC_003912.7 identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein MobB 867399 mobB 3231441 mobB Campylobacter jejuni RM1221 molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_178930.1 866908 R 195099 CDS YP_178931.1 57237683 3231442 867495..867980 1 NC_003912.7 identified by similarity to GP:29341106; lipoprotein 867980 3231442 CJE0929 Campylobacter jejuni RM1221 lipoprotein YP_178931.1 867495 D 195099 CDS YP_178932.1 57237684 3231443 complement(867877..869502) 1 NC_003912.7 identified by similarity to SP:P03810; match to protein family HMM PF01464; soluble lytic murein transglycosylase 869502 3231443 CJE0930 Campylobacter jejuni RM1221 soluble lytic murein transglycosylase YP_178932.1 867877 R 195099 CDS YP_178933.1 57237685 3231444 complement(869499..869780) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00585; match to protein family HMM PF02325; YGGT family protein 869780 3231444 CJE0931 Campylobacter jejuni RM1221 YGGT family protein YP_178933.1 869499 R 195099 CDS YP_178934.1 57237686 3231445 complement(869783..871078) 1 NC_003912.7 charges one glutamine molecule and pairs it with tRNA(Gln); glutamylglutaminyl-tRNA synthetase 871078 gltX 3231445 gltX Campylobacter jejuni RM1221 glutamylglutaminyl-tRNA synthetase YP_178934.1 869783 R 195099 CDS YP_178935.1 57237687 3231446 871164..872288 1 NC_003912.7 identified by similarity to SP:Q9ZM43; match to protein family HMM PF00149; Ser/Thr protein phosphatase 872288 3231446 CJE0933 Campylobacter jejuni RM1221 Ser/Thr protein phosphatase YP_178935.1 871164 D 195099 CDS YP_178936.1 57237688 3231447 872285..873085 1 NC_003912.7 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 873085 psd 3231447 psd Campylobacter jejuni RM1221 phosphatidylserine decarboxylase YP_178936.1 872285 D 195099 CDS YP_178937.1 57237689 3231448 complement(873082..873363) 1 NC_003912.7 identified by match to protein family HMM TIGR00789; FlhB domain-containing protein 873363 3231448 CJE0935 Campylobacter jejuni RM1221 FlhB domain-containing protein YP_178937.1 873082 R 195099 CDS YP_178938.1 57237690 3231449 complement(873360..875471) 1 NC_003912.7 hypothetical protein 875471 3231449 CJE0936 Campylobacter jejuni RM1221 hypothetical protein YP_178938.1 873360 R 195099 CDS YP_178939.1 57237691 3231450 complement(875464..876651) 1 NC_003912.7 identified by similarity to GB:AAN68690.1; match to protein family HMM PF00083; major facilitator family protein 876651 3231450 CJE0937 Campylobacter jejuni RM1221 major facilitator family protein YP_178939.1 875464 R 195099 CDS YP_178940.1 57237692 3231451 complement(876629..877132) 1 NC_003912.7 hypothetical protein 877132 3231451 CJE0938 Campylobacter jejuni RM1221 hypothetical protein YP_178940.1 876629 R 195099 CDS YP_178941.1 57237693 3231452 complement(877132..877461) 1 NC_003912.7 hypothetical protein 877461 3231452 CJE0939 Campylobacter jejuni RM1221 hypothetical protein YP_178941.1 877132 R 195099 CDS YP_178942.1 57237694 3231453 complement(877458..878732) 1 NC_003912.7 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 878732 hemL 3231453 hemL Campylobacter jejuni RM1221 glutamate-1-semialdehyde aminotransferase YP_178942.1 877458 R 195099 CDS YP_178943.1 57237695 3231454 complement(878729..879076) 1 NC_003912.7 identified by similarity to PIR:D64549; hypothetical protein 879076 3231454 CJE0941 Campylobacter jejuni RM1221 hypothetical protein YP_178943.1 878729 R 195099 CDS YP_178944.1 57237696 3231455 879156..880004 1 NC_003912.7 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 880004 folD 3231455 folD Campylobacter jejuni RM1221 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_178944.1 879156 D 195099 CDS YP_178945.1 57237697 3231456 880014..880862 1 NC_003912.7 identified by similarity to SP:P00803; match to protein family HMM PF00461; signal peptidase I 880862 lepB 3231456 lepB Campylobacter jejuni RM1221 signal peptidase I YP_178945.1 880014 D 195099 CDS YP_178946.1 57237698 3231457 complement(880884..882044) 1 NC_003912.7 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis MoeA protein 882044 3231457 CJE0944 Campylobacter jejuni RM1221 molybdopterin biosynthesis MoeA protein YP_178946.1 880884 R 195099 CDS YP_178947.1 57237699 3231458 complement(882041..883297) 1 NC_003912.7 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 883297 murA 3231458 murA Campylobacter jejuni RM1221 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_178947.1 882041 R 195099 CDS YP_178948.1 57237700 3231459 complement(883363..883791) 1 NC_003912.7 hypothetical protein 883791 3231459 CJE0946 Campylobacter jejuni RM1221 hypothetical protein YP_178948.1 883363 R 195099 CDS YP_178949.1 57237701 3231460 883885..884757 1 NC_003912.7 identified by similarity to OMNI:NTL01FN0565; match to protein family HMM PF00892; integral membrane protein 884757 3231460 CJE0947 Campylobacter jejuni RM1221 integral membrane protein YP_178949.1 883885 D 195099 CDS YP_178950.1 57237702 3231461 complement(884744..885310) 1 NC_003912.7 identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; para-aminobenzoate synthase glutamine amidotransferase, component II 885310 pabA 3231461 pabA Campylobacter jejuni RM1221 para-aminobenzoate synthase glutamine amidotransferase, component II YP_178950.1 884744 R 195099 CDS YP_178951.1 57237703 3231462 complement(885307..887091) 1 NC_003912.7 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553; para-aminobenzoate synthase glutamine amidotransferase, component I 887091 pabB 3231462 pabB Campylobacter jejuni RM1221 para-aminobenzoate synthase glutamine amidotransferase, component I YP_178951.1 885307 R 195099 CDS YP_178952.1 57237704 3231463 complement(887081..888145) 1 NC_003912.7 identified by similarity to SP:P21891; match to protein family HMM PF00589; phage integrase family site specific recombinase 888145 3231463 CJE0950 Campylobacter jejuni RM1221 phage integrase family site specific recombinase YP_178952.1 887081 R 195099 CDS YP_178953.1 57237705 3231464 888773..889435 1 NC_003912.7 identified by similarity to SP:P24991; thiol:disulfide interchange protein DsbA 889435 dsbA 3231464 dsbA Campylobacter jejuni RM1221 thiol:disulfide interchange protein DsbA YP_178953.1 888773 D 195099 CDS YP_178954.1 57237706 3231465 889447..890232 1 NC_003912.7 identified by similarity to SP:P30018; disulfide oxidoreductase 890232 dsbB 3231465 dsbB Campylobacter jejuni RM1221 disulfide oxidoreductase YP_178954.1 889447 D 195099 CDS YP_178955.1 57237707 3231467 891829..892500 1 NC_003912.7 identified by match to protein family HMM PF01323; thiol:disulfide interchange protein DsbA 892500 3231467 CJE0954 Campylobacter jejuni RM1221 thiol:disulfide interchange protein DsbA YP_178955.1 891829 D 195099 CDS YP_178956.1 57237708 3231469 893729..893869 1 NC_003912.7 hypothetical protein 893869 3231469 CJE0958 Campylobacter jejuni RM1221 hypothetical protein YP_178956.1 893729 D 195099 CDS YP_178957.1 57237709 3231470 complement(893857..894489) 1 NC_003912.7 periplasmic protein 894489 3231470 CJE0959 Campylobacter jejuni RM1221 periplasmic protein YP_178957.1 893857 R 195099 CDS YP_178958.1 57237710 3231471 complement(894486..894728) 1 NC_003912.7 identified by similarity to SP:Q60375; hypothetical protein 894728 3231471 CJE0960 Campylobacter jejuni RM1221 hypothetical protein YP_178958.1 894486 R 195099 CDS YP_178959.1 57237711 3231472 complement(894712..895758) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00379; hypothetical protein 895758 3231472 CJE0961 Campylobacter jejuni RM1221 hypothetical protein YP_178959.1 894712 R 195099 CDS YP_178960.1 57237712 3231473 complement(895767..897941) 1 NC_003912.7 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 897941 flhA 3231473 flhA Campylobacter jejuni RM1221 flagellar biosynthesis protein FlhA YP_178960.1 895767 R 195099 CDS YP_178961.1 57237713 3231474 complement(897928..898338) 1 NC_003912.7 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; RrF2 family protein 898338 3231474 CJE0963 Campylobacter jejuni RM1221 RrF2 family protein YP_178961.1 897928 R 195099 CDS YP_178962.1 57237714 3231475 898513..898785 1 NC_003912.7 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 898785 rpsO 3231475 rpsO Campylobacter jejuni RM1221 30S ribosomal protein S15 YP_178962.1 898513 D 195099 CDS YP_178963.1 57237715 3231476 complement(898871..901696) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00332; match to protein family HMM PF01580; cell division protein FtsK 901696 3231476 CJE0965 Campylobacter jejuni RM1221 cell division protein FtsK YP_178963.1 898871 R 195099 CDS YP_178964.1 57237716 3231477 complement(901821..904073) 1 NC_003912.7 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; lagellar hook-associated protein FlgL 904073 3231477 CJE0966 Campylobacter jejuni RM1221 lagellar hook-associated protein FlgL YP_178964.1 901821 R 195099 CDS YP_178965.1 57237717 3231478 complement(904454..906385) 1 NC_003912.7 identified by similarity to GP:28806586; match to protein family HMM PF00005; ABC transporter ATP-binding protein 906385 3231478 CJE0967 Campylobacter jejuni RM1221 ABC transporter ATP-binding protein YP_178965.1 904454 R 195099 CDS YP_178966.1 57237718 3231479 complement(906389..907678) 1 NC_003912.7 identified by similarity to OMNI:NTL01TT0955; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 907678 3231479 CJE0968 Campylobacter jejuni RM1221 sensor histidine kinase YP_178966.1 906389 R 195099 CDS YP_178967.1 57237719 3231480 complement(907672..908334) 1 NC_003912.7 identified by similarity to OMNI:SA0019; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 908334 3231480 CJE0969 Campylobacter jejuni RM1221 DNA-binding response regulator YP_178967.1 907672 R 195099 CDS YP_178968.1 57237720 3231481 complement(908321..909904) 1 NC_003912.7 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 909904 serA 3231481 serA Campylobacter jejuni RM1221 D-3-phosphoglycerate dehydrogenase YP_178968.1 908321 R 195099 CDS YP_178969.1 57237721 3231482 complement(909901..910389) 1 NC_003912.7 hypothetical protein 910389 3231482 CJE0971 Campylobacter jejuni RM1221 hypothetical protein YP_178969.1 909901 R 195099 CDS YP_178970.1 57237722 3231483 complement(910389..912059) 1 NC_003912.7 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 912059 rpsA 3231483 rpsA Campylobacter jejuni RM1221 30S ribosomal protein S1 YP_178970.1 910389 R 195099 CDS YP_178971.1 57237723 3231484 complement(912191..913024) 1 NC_003912.7 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 913024 ispH 3231484 ispH Campylobacter jejuni RM1221 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_178971.1 912191 R 195099 CDS YP_178972.1 57237724 3231485 complement(913014..914300) 1 NC_003912.7 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 914300 aroA 3231485 aroA Campylobacter jejuni RM1221 3-phosphoshikimate 1-carboxyvinyltransferase YP_178972.1 913014 R 195099 CDS YP_178973.1 57237725 3231486 complement(914297..916618) 1 NC_003912.7 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 916618 pheT 3231486 pheT Campylobacter jejuni RM1221 phenylalanyl-tRNA synthetase subunit beta YP_178973.1 914297 R 195099 CDS YP_178974.1 57237726 3231487 complement(916615..917607) 1 NC_003912.7 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 917607 pheS 3231487 pheS Campylobacter jejuni RM1221 phenylalanyl-tRNA synthetase subunit alpha YP_178974.1 916615 R 195099 CDS YP_178975.1 57237727 3231488 917730..918095 1 NC_003912.7 identified by match to protein family HMM PF01230; HIT family protein 918095 3231488 CJE0977 Campylobacter jejuni RM1221 HIT family protein YP_178975.1 917730 D 195099 CDS YP_178976.1 57237728 3231489 complement(918125..918694) 1 NC_003912.7 identified by similarity to SP:Q46948; match to protein family HMM PF01965; match to protein family HMM TIGR01383; 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme 918694 thiJ 3231489 thiJ Campylobacter jejuni RM1221 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme YP_178976.1 918125 R 195099 CDS YP_178977.1 57237729 3231490 complement(918687..918866) 1 NC_003912.7 hypothetical protein 918866 3231490 CJE0979 Campylobacter jejuni RM1221 hypothetical protein YP_178977.1 918687 R 195099 CDS YP_178978.1 57237730 3231491 918949..919692 1 NC_003912.7 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine amino acid ABC transporter permease 919692 3231491 CJE0980 Campylobacter jejuni RM1221 His/Glu/Gln/Arg/opine amino acid ABC transporter permease YP_178978.1 918949 D 195099 CDS YP_178979.1 57237731 3231492 919685..920413 1 NC_003912.7 identified by similarity to SP:P27675; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 920413 3231492 CJE0981 Campylobacter jejuni RM1221 amino acid ABC transporter ATP-binding protein YP_178979.1 919685 D 195099 CDS YP_178980.1 57237732 3231493 complement(920441..921907) 1 NC_003912.7 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino acid carrier protein 921907 3231493 CJE0982 Campylobacter jejuni RM1221 amino acid carrier protein YP_178980.1 920441 R 195099 CDS YP_178981.1 57237733 3231494 complement(922011..922478) 1 NC_003912.7 identified by match to protein family HMM PF00588; RNA methyltransferase 922478 3231494 CJE0983 Campylobacter jejuni RM1221 RNA methyltransferase YP_178981.1 922011 R 195099 CDS YP_178982.1 57237734 3231495 complement(922481..923467) 1 NC_003912.7 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 923467 alr 3231495 alr Campylobacter jejuni RM1221 alanine racemase YP_178982.1 922481 R 195099 CDS YP_178983.1 57237735 3231496 complement(923468..924445) 1 NC_003912.7 identified by similarity to OMNI:HP0518; hypothetical protein 924445 3231496 CJE0985 Campylobacter jejuni RM1221 hypothetical protein YP_178983.1 923468 R 195099 CDS YP_178984.1 57237736 3231497 924602..925072 1 NC_003912.7 identified by similarity to GP:28974236; hypothetical protein 925072 3231497 CJE0986 Campylobacter jejuni RM1221 hypothetical protein YP_178984.1 924602 D 195099 CDS YP_178985.1 57237737 3231498 925158..925577 1 NC_003912.7 identified by similarity to OMNI:VCA0037; match to protein family HMM PF04314; hypothetical protein 925577 3231498 CJE0987 Campylobacter jejuni RM1221 hypothetical protein YP_178985.1 925158 D 195099 CDS YP_178986.1 57237738 3231499 925581..926033 1 NC_003912.7 identified by similarity to GP:28974236; hypothetical protein 926033 3231499 CJE0988 Campylobacter jejuni RM1221 hypothetical protein YP_178986.1 925581 D 195099 CDS YP_178987.1 57237739 3231500 926030..926590 1 NC_003912.7 identified by match to protein family HMM PF02630; SCO1/SenC family protein 926590 3231500 CJE0989 Campylobacter jejuni RM1221 SCO1/SenC family protein YP_178987.1 926030 D 195099 CDS YP_178988.1 57237740 3231501 complement(926597..927496) 1 NC_003912.7 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 927496 cysK 3231501 cysK Campylobacter jejuni RM1221 cysteine synthase A YP_178988.1 926597 R 195099 CDS YP_178989.1 57237741 3231502 complement(927623..927919) 1 NC_003912.7 identified by similarity to SP:P02346; match to protein family HMM PF00216; DNA-binding protein HU 927919 hup 3231502 hup Campylobacter jejuni RM1221 DNA-binding protein HU YP_178989.1 927623 R 195099 CDS YP_178990.1 57237742 3231503 complement(928021..929853) 1 NC_003912.7 identified by similarity to GP:5052311; invasion antigen B 929853 ciaB 3231503 ciaB Campylobacter jejuni RM1221 invasion antigen B YP_178990.1 928021 R 195099 CDS YP_178991.1 57237743 3231504 929915..930328 1 NC_003912.7 identified by match to protein family HMM PF03061; thioesterase 930328 3231504 CJE0993 Campylobacter jejuni RM1221 thioesterase YP_178991.1 929915 D 195099 CDS YP_178992.1 57237744 3231505 complement(930368..930565) 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ00861; match to protein family HMM PF04328; hypothetical protein 930565 3231505 CJE0994 Campylobacter jejuni RM1221 hypothetical protein YP_178992.1 930368 R 195099 CDS YP_178993.1 57237745 3231506 complement(930546..932657) 1 NC_003912.7 identified by similarity to SP:P15078; match to protein family HMM PF02554; carbon starvation protein A 932657 cstA 3231506 cstA Campylobacter jejuni RM1221 carbon starvation protein A YP_178993.1 930546 R 195099 CDS YP_178994.1 57237746 3231507 complement(932824..933753) 1 NC_003912.7 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 933753 prsA 3231507 prsA Campylobacter jejuni RM1221 ribose-phosphate pyrophosphokinase YP_178994.1 932824 R 195099 CDS YP_178995.1 57237747 3231508 complement(933860..934519) 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ00864; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease PEB1 934519 3231508 CJE0997 Campylobacter jejuni RM1221 amino acid ABC transporter permease PEB1 YP_178995.1 933860 R 195099 CDS YP_178996.1 57237748 3231509 complement(934530..935282) 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ00865; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease PEB1 935282 3231509 CJE0998 Campylobacter jejuni RM1221 amino acid ABC transporter permease PEB1 YP_178996.1 934530 R 195099 CDS YP_178997.1 57237749 3231510 complement(935284..936063) 1 NC_003912.7 PEB1; bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein 936063 pebA 3231510 pebA Campylobacter jejuni RM1221 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein YP_178997.1 935284 R 195099 CDS YP_178998.1 57237750 3231511 complement(936085..936813) 1 NC_003912.7 identified by similarity to SP:P45677; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein PEB1 936813 pebC 3231511 pebC Campylobacter jejuni RM1221 amino acid ABC transporter ATP-binding protein PEB1 YP_178998.1 936085 R 195099 CDS YP_178999.1 57237751 3231512 complement(936949..937737) 1 NC_003912.7 identified by similarity to SP:P31105; match to protein family HMM PF01739; match to protein family HMM PF03705; chemotaxis protein methyltransferase CheR 937737 cheR 3231512 cheR Campylobacter jejuni RM1221 chemotaxis protein methyltransferase CheR YP_178999.1 936949 R 195099 CDS YP_179000.1 57237752 3231513 complement(937753..938307) 1 NC_003912.7 identified by similarity to SP:P04042; match to protein family HMM PF01339; chemotaxis protein CheB 938307 cheB 3231513 cheB Campylobacter jejuni RM1221 chemotaxis protein CheB YP_179000.1 937753 R 195099 CDS YP_179001.1 57237753 3231514 938473..938910 1 NC_003912.7 identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689; ribose 5-phosphate isomerase B 938910 rpiB 3231514 rpiB Campylobacter jejuni RM1221 ribose 5-phosphate isomerase B YP_179001.1 938473 D 195099 CDS YP_179002.1 57237754 3231515 938910..939242 1 NC_003912.7 identified by similarity to OMNI:HP0573; hypothetical protein 939242 3231515 CJE1004 Campylobacter jejuni RM1221 hypothetical protein YP_179002.1 938910 D 195099 CDS YP_179003.1 57237755 3231516 939239..939787 1 NC_003912.7 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 939787 apt 3231516 apt Campylobacter jejuni RM1221 adenine phosphoribosyltransferase YP_179003.1 939239 D 195099 CDS YP_179004.1 57237756 3231517 939806..940402 1 NC_003912.7 identified by match to protein family HMM PF00597; DedA family protein 940402 3231517 CJE1006 Campylobacter jejuni RM1221 DedA family protein YP_179004.1 939806 D 195099 CDS YP_179005.1 57237757 3231518 940399..941850 1 NC_003912.7 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 941850 3231518 CJE1007 Campylobacter jejuni RM1221 leucyl aminopeptidase YP_179005.1 940399 D 195099 CDS YP_179006.1 57237758 3231519 941847..942950 1 NC_003912.7 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 942950 3231519 CJE1008 Campylobacter jejuni RM1221 GTP-dependent nucleic acid-binding protein EngD YP_179006.1 941847 D 195099 CDS YP_179007.1 57237759 3231520 complement(942972..944354) 1 NC_003912.7 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 944354 argH 3231520 argH Campylobacter jejuni RM1221 argininosuccinate lyase YP_179007.1 942972 R 195099 CDS YP_179008.1 57237760 3231521 complement(944364..945938) 1 NC_003912.7 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 945938 pckA 3231521 pckA Campylobacter jejuni RM1221 phosphoenolpyruvate carboxykinase YP_179008.1 944364 R 195099 CDS YP_179009.1 57237761 3231522 complement(945951..947750) 1 NC_003912.7 identified by match to protein family HMM PF00364; oxaloacetate decarboxylase, alpha subunit 947750 3231522 CJE1011 Campylobacter jejuni RM1221 oxaloacetate decarboxylase, alpha subunit YP_179009.1 945951 R 195099 CDS YP_179010.1 57237762 3231523 complement(947782..949122) 1 NC_003912.7 identified by match to protein family HMM PF00209; sodium transporter 949122 3231523 CJE1012 Campylobacter jejuni RM1221 sodium transporter YP_179010.1 947782 R 195099 CDS YP_179011.1 57237763 3231524 complement(949135..950469) 1 NC_003912.7 identified by similarity to SP:P45320; match to protein family HMM PF00209; sodium transporter 950469 3231524 CJE1013 Campylobacter jejuni RM1221 sodium transporter YP_179011.1 949135 R 195099 CDS YP_179012.1 57237764 3231525 950702..951040 1 NC_003912.7 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 951040 atpE 3231525 atpE Campylobacter jejuni RM1221 F0F1 ATP synthase subunit C YP_179012.1 950702 D 195099 CDS YP_179013.1 57237765 3231526 951358..952269 1 NC_003912.7 identified by similarity to OMNI:NTL02LI4054; match to protein family HMM PF03547; hypothetical protein 952269 3231526 CJE1015 Campylobacter jejuni RM1221 hypothetical protein YP_179013.1 951358 D 195099 CDS YP_179014.1 57237766 3231527 complement(952277..955789) 1 NC_003912.7 identified by similarity to SP:P31119; match to protein family HMM PF00501; match to protein family HMM PF01553; 2-acyl-glycerophospho-ethanolamine acyltransferase 955789 aas 3231527 aas Campylobacter jejuni RM1221 2-acyl-glycerophospho-ethanolamine acyltransferase YP_179014.1 952277 R 195099 CDS YP_179015.1 57237767 3231528 complement(955834..956214) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00357; hypothetical protein 956214 3231528 CJE1017 Campylobacter jejuni RM1221 hypothetical protein YP_179015.1 955834 R 195099 CDS YP_179016.1 57237768 3231529 complement(957015..957800) 1 NC_003912.7 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 957800 3231529 CJE1018 Campylobacter jejuni RM1221 His/Glu/Gln/Arg/opine ABC transporter permease YP_179016.1 957015 R 195099 CDS YP_179017.1 57237769 3231530 complement(957823..959028) 1 NC_003912.7 identified by match to protein family HMM PF02687; permease 959028 3231530 CJE1019 Campylobacter jejuni RM1221 permease YP_179017.1 957823 R 195099 CDS YP_179018.1 57237770 3231531 complement(959025..961613) 1 NC_003912.7 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 961613 secA 3231531 secA Campylobacter jejuni RM1221 preprotein translocase subunit SecA YP_179018.1 959025 R 195099 CDS YP_179019.2 161486705 3231532 961713..962222 1 NC_003912.7 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 962222 lolA 3231532 lolA Campylobacter jejuni RM1221 outer-membrane lipoprotein carrier protein YP_179019.2 961713 D 195099 CDS YP_179020.1 57237772 3231533 complement(962219..962953) 1 NC_003912.7 identified by similarity to OMNI:BBA60; hypothetical protein 962953 3231533 CJE1022 Campylobacter jejuni RM1221 hypothetical protein YP_179020.1 962219 R 195099 CDS YP_179021.1 57237773 3231534 complement(962963..964306) 1 NC_003912.7 identified by similarity to GP:29341447; hypothetical protein 964306 3231534 CJE1023 Campylobacter jejuni RM1221 hypothetical protein YP_179021.1 962963 R 195099 CDS YP_179022.1 57237774 3231535 964355..965701 1 NC_003912.7 identified by similarity to OMNI:HP0087; lipoprotein 965701 3231535 CJE1024 Campylobacter jejuni RM1221 lipoprotein YP_179022.1 964355 D 195099 CDS YP_179023.1 57237775 3231536 complement(965713..966585) 1 NC_003912.7 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 966585 3231536 CJE1025 Campylobacter jejuni RM1221 carbon-nitrogen family hydrolase YP_179023.1 965713 R 195099 CDS YP_179024.1 57237776 3231537 complement(966582..967469) 1 NC_003912.7 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 967469 3231537 CJE1026 Campylobacter jejuni RM1221 cation efflux family protein YP_179024.1 966582 R 195099 CDS YP_179025.1 57237777 3231538 complement(967466..968443) 1 NC_003912.7 identified by match to protein family HMM PF04371; peptidyl-arginine deiminase 968443 3231538 CJE1027 Campylobacter jejuni RM1221 peptidyl-arginine deiminase YP_179025.1 967466 R 195099 CDS YP_179026.1 57237778 3231539 complement(968542..968976) 1 NC_003912.7 identified by similarity to SP:P52644; match to protein family HMM PF03724; lipoprotein 968976 3231539 CJE1028 Campylobacter jejuni RM1221 lipoprotein YP_179026.1 968542 R 195099 CDS YP_179027.1 57237779 3231540 complement(968992..969111) 1 NC_003912.7 hypothetical protein 969111 3231540 CJE1029 Campylobacter jejuni RM1221 hypothetical protein YP_179027.1 968992 R 195099 CDS YP_179028.1 57237780 3231541 complement(969127..969660) 1 NC_003912.7 identified by similarity to OMNI:SO0500; match to protein family HMM PF00015; methyl-accepting chemotaxis protein 969660 3231541 CJE1030 Campylobacter jejuni RM1221 methyl-accepting chemotaxis protein YP_179028.1 969127 R 195099 CDS YP_179029.1 57237781 3231543 complement(970677..972209) 1 NC_003912.7 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 972209 purH 3231543 purH Campylobacter jejuni RM1221 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_179029.1 970677 R 195099 CDS YP_179030.1 57237782 3231544 complement(972212..972850) 1 NC_003912.7 identified by similarity to SP:Q45885; match to protein family HMM PF00226; DnaJ domain-containing protein 972850 3231544 CJE1034 Campylobacter jejuni RM1221 DnaJ domain-containing protein YP_179030.1 972212 R 195099 CDS YP_179031.1 57237783 3231545 complement(972979..975165) 1 NC_003912.7 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 975165 purL 3231545 purL Campylobacter jejuni RM1221 phosphoribosylformylglycinamidine synthase II YP_179031.1 972979 R 195099 CDS YP_179032.1 57237784 3231546 complement(975176..976504) 1 NC_003912.7 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 976504 trmE 3231546 trmE Campylobacter jejuni RM1221 tRNA modification GTPase TrmE YP_179032.1 975176 R 195099 CDS YP_179033.1 57237785 3231547 complement(976497..977315) 1 NC_003912.7 identified by similarity to OMNI:HP1451; hypothetical protein 977315 3231547 CJE1037 Campylobacter jejuni RM1221 hypothetical protein YP_179033.1 976497 R 195099 CDS YP_179034.1 57237786 3231548 complement(977312..978904) 1 NC_003912.7 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 978904 3231548 CJE1038 Campylobacter jejuni RM1221 inner membrane protein translocase component YidC YP_179034.1 977312 R 195099 CDS YP_179035.1 57237787 3231549 complement(978901..979242) 1 NC_003912.7 identified by similarity to SP:O25988; match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 979242 3231549 CJE1039 Campylobacter jejuni RM1221 hypothetical protein YP_179035.1 978901 R 195099 CDS YP_179036.1 57237788 3231550 complement(979239..979565) 1 NC_003912.7 identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component 979565 rnpA 3231550 rnpA Campylobacter jejuni RM1221 ribonuclease P protein component YP_179036.1 979239 R 195099 CDS YP_179037.1 57237789 3231551 complement(979562..979696) 1 NC_003912.7 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 979696 rpmH 3231551 rpmH Campylobacter jejuni RM1221 50S ribosomal protein L34 YP_179037.1 979562 R 195099 CDS YP_179038.1 57237790 3231552 979827..980306 1 NC_003912.7 identified by match to protein family HMM PF00583; acetyltransferase 980306 3231552 CJE1042 Campylobacter jejuni RM1221 acetyltransferase YP_179038.1 979827 D 195099 CDS YP_179039.1 57237791 3231553 980303..980911 1 NC_003912.7 identified by similarity to OMNI:NTL01AA01172; hypothetical protein 980911 3231553 CJE1043 Campylobacter jejuni RM1221 hypothetical protein YP_179039.1 980303 D 195099 CDS YP_179040.1 57237792 3231554 980908..982098 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00711; hypothetical protein 982098 3231554 CJE1044 Campylobacter jejuni RM1221 hypothetical protein YP_179040.1 980908 D 195099 CDS YP_179041.1 57237793 3231555 complement(982090..982464) 1 NC_003912.7 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase 982464 3231555 CJE1045 Campylobacter jejuni RM1221 thioesterase YP_179041.1 982090 R 195099 CDS YP_179042.1 57237794 3231556 complement(982572..982670) 1 NC_003912.7 hypothetical protein 982670 3231556 CJE1046 Campylobacter jejuni RM1221 hypothetical protein YP_179042.1 982572 R 195099 CDS YP_179043.1 57237795 3231558 984859..984987 1 NC_003912.7 hypothetical protein 984987 3231558 CJE1048 Campylobacter jejuni RM1221 hypothetical protein YP_179043.1 984859 D 195099 CDS YP_179044.1 57237796 3231559 985084..985197 1 NC_003912.7 hypothetical protein 985197 3231559 CJE1049 Campylobacter jejuni RM1221 hypothetical protein YP_179044.1 985084 D 195099 CDS YP_179045.1 57237797 3231560 985215..985391 1 NC_003912.7 hypothetical protein 985391 3231560 CJE1050 Campylobacter jejuni RM1221 hypothetical protein YP_179045.1 985215 D 195099 CDS YP_179046.1 57237798 3231561 complement(985388..985501) 1 NC_003912.7 hypothetical protein 985501 3231561 CJE1051 Campylobacter jejuni RM1221 hypothetical protein YP_179046.1 985388 R 195099 CDS YP_179047.1 57237799 3231562 985554..986084 1 NC_003912.7 hypothetical protein 986084 3231562 CJE1052 Campylobacter jejuni RM1221 hypothetical protein YP_179047.1 985554 D 195099 CDS YP_179048.1 57237800 3231563 986086..986409 1 NC_003912.7 identified by similarity to GP:18389893; hypothetical protein 986409 3231563 CJE1053 Campylobacter jejuni RM1221 hypothetical protein YP_179048.1 986086 D 195099 CDS YP_179049.1 57237801 3231564 986550..986732 1 NC_003912.7 identified by similarity to GP:29541252; hypothetical protein 986732 3231564 CJE1054 Campylobacter jejuni RM1221 hypothetical protein YP_179049.1 986550 D 195099 CDS YP_179050.1 57237802 3231565 complement(986744..986875) 1 NC_003912.7 hypothetical protein 986875 3231565 CJE1055 Campylobacter jejuni RM1221 hypothetical protein YP_179050.1 986744 R 195099 CDS YP_179051.1 57237803 3231567 988820..989695 1 NC_003912.7 methyltransferase 989695 3231567 CJE1058 Campylobacter jejuni RM1221 methyltransferase YP_179051.1 988820 D 195099 CDS YP_179052.1 57237804 3231568 989768..990346 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00957; hypothetical protein 990346 3231568 CJE1059 Campylobacter jejuni RM1221 hypothetical protein YP_179052.1 989768 D 195099 CDS YP_179053.1 57237805 3231569 complement(990347..990520) 1 NC_003912.7 lipoprotein 990520 3231569 CJE1060 Campylobacter jejuni RM1221 lipoprotein YP_179053.1 990347 R 195099 CDS YP_179054.1 57237806 3231570 complement(990529..991056) 1 NC_003912.7 identified by similarity to SP:P43270; match to protein family HMM PF00565; thermonuclease 991056 3231570 CJE1061 Campylobacter jejuni RM1221 thermonuclease YP_179054.1 990529 R 195099 CDS YP_179055.1 57237807 3231571 991124..992392 1 NC_003912.7 identified by similarity to SP:P15288; match to protein family HMM PF01546; aminoacyl-histidine dipeptidase 992392 pepD 3231571 pepD Campylobacter jejuni RM1221 aminoacyl-histidine dipeptidase YP_179055.1 991124 D 195099 CDS YP_179056.1 57237808 3231572 complement(992375..993622) 1 NC_003912.7 identified by similarity to GP:5823681; match to protein family HMM PF00083; transport protein CjaB 993622 cjaB 3231572 cjaB Campylobacter jejuni RM1221 transport protein CjaB YP_179056.1 992375 R 195099 CDS YP_179057.1 57237809 3231573 complement(993663..994502) 1 NC_003912.7 identified by similarity to GB:AAD26123.1; similarity to GB:CAA71822.1; match to protein family HMM PF00497; surface antigen, CjaA 994502 3231573 CJE1064 Campylobacter jejuni RM1221 surface antigen, CjaA YP_179057.1 993663 R 195099 CDS YP_179058.1 57237810 3231574 994722..995840 1 NC_003912.7 identified by similarity to GP:11095281; surface-exposed lipoprotein 995840 jlpA 3231574 jlpA Campylobacter jejuni RM1221 surface-exposed lipoprotein YP_179058.1 994722 D 195099 CDS YP_179059.1 57237811 3231575 995932..996672 1 NC_003912.7 identified by similarity to SP:P45491; match to protein family HMM PF03883; hypothetical protein 996672 3231575 CJE1066 Campylobacter jejuni RM1221 hypothetical protein YP_179059.1 995932 D 195099 CDS YP_179060.1 57237812 3231576 complement(996676..997827) 1 NC_003912.7 identified by similarity to GP:535810; match to protein family HMM PF01546; match to protein family HMM TIGR01891; hippurate hydrolase 997827 hipO 3231576 hipO Campylobacter jejuni RM1221 hippurate hydrolase YP_179060.1 996676 R 195099 CDS YP_179061.1 57237813 3231577 complement(997829..998440) 1 NC_003912.7 hypothetical protein 998440 3231577 CJE1068 Campylobacter jejuni RM1221 hypothetical protein YP_179061.1 997829 R 195099 CDS YP_179062.1 57237814 3231578 998544..998882 1 NC_003912.7 identified by similarity to OMNI:PG2044; hypothetical protein 998882 3231578 CJE1069 Campylobacter jejuni RM1221 hypothetical protein YP_179062.1 998544 D 195099 CDS YP_179063.1 57237815 3231579 complement(998885..999646) 1 NC_003912.7 hypothetical protein 999646 3231579 CJE1070 Campylobacter jejuni RM1221 hypothetical protein YP_179063.1 998885 R 195099 CDS YP_179064.1 57237816 3231580 complement(999643..1000908) 1 NC_003912.7 identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur cluster-binding domain-containing protein 1000908 3231580 CJE1071 Campylobacter jejuni RM1221 iron-sulfur cluster-binding domain-containing protein YP_179064.1 999643 R 195099 CDS YP_179065.1 57237817 3231581 complement(1000910..1002265) 1 NC_003912.7 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1002265 hemN 3231581 hemN Campylobacter jejuni RM1221 coproporphyrinogen III oxidase YP_179065.1 1000910 R 195099 CDS YP_179066.1 57237818 3231582 complement(1002252..1002743) 1 NC_003912.7 identified by similarity to SP:O25375; hypothetical protein 1002743 3231582 CJE1073 Campylobacter jejuni RM1221 hypothetical protein YP_179066.1 1002252 R 195099 CDS YP_179067.1 57237819 3231583 complement(1002740..1003660) 1 NC_003912.7 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1003660 argF 3231583 argF Campylobacter jejuni RM1221 ornithine carbamoyltransferase YP_179067.1 1002740 R 195099 CDS YP_179068.1 57237820 3231584 complement(1003657..1004640) 1 NC_003912.7 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1004640 hemB 3231584 hemB Campylobacter jejuni RM1221 delta-aminolevulinic acid dehydratase YP_179068.1 1003657 R 195099 CDS YP_179069.1 57237821 3231585 1004698..1005258 1 NC_003912.7 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1005258 ribA 3231585 ribA Campylobacter jejuni RM1221 GTP cyclohydrolase II YP_179069.1 1004698 D 195099 CDS YP_179070.1 57237822 3231586 1005259..1005825 1 NC_003912.7 identified by similarity to SP:O25703; match to protein family HMM PF02527; match to protein family HMM TIGR00138; methyltransferase GidB 1005825 gidB 3231586 gidB Campylobacter jejuni RM1221 methyltransferase GidB YP_179070.1 1005259 D 195099 CDS YP_179071.1 57237823 3231587 complement(1005841..1006413) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00288; hypothetical protein 1006413 3231587 CJE1078 Campylobacter jejuni RM1221 hypothetical protein YP_179071.1 1005841 R 195099 CDS YP_179072.1 57237824 3231588 complement(1006508..1007605) 1 NC_003912.7 identified by similarity to OMNI:PP3661; match to protein family HMM PF03601; hypothetical protein 1007605 3231588 CJE1079 Campylobacter jejuni RM1221 hypothetical protein YP_179072.1 1006508 R 195099 CDS YP_179073.1 57237825 3231589 1007718..1008599 1 NC_003912.7 identified by similarity to GP:29898768; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1008599 3231589 CJE1080 Campylobacter jejuni RM1221 LysR family transcriptional regulator YP_179073.1 1007718 D 195099 CDS YP_179074.1 57237826 3231590 1008679..1010547 1 NC_003912.7 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 1010547 rpoD 3231590 rpoD Campylobacter jejuni RM1221 RNA polymerase sigma factor RpoD YP_179074.1 1008679 D 195099 CDS YP_179075.1 57237827 3231591 complement(1010563..1011075) 1 NC_003912.7 phosphohistidine phosphatase SixA 1011075 sixA 3231591 sixA Campylobacter jejuni RM1221 phosphohistidine phosphatase SixA YP_179075.1 1010563 R 195099 CDS YP_179076.1 57237828 3231592 complement(1011072..1011590) 1 NC_003912.7 identified by match to protein family HMM PF01694; rhomboid family protein 1011590 3231592 CJE1083 Campylobacter jejuni RM1221 rhomboid family protein YP_179076.1 1011072 R 195099 CDS YP_179077.1 57237829 3231593 1011689..1012105 1 NC_003912.7 identified by similarity to GP:29341996; hypothetical protein 1012105 3231593 CJE1084 Campylobacter jejuni RM1221 hypothetical protein YP_179077.1 1011689 D 195099 CDS YP_179078.1 57237830 3231594 complement(1012113..1013729) 1 NC_003912.7 identified by similarity to PIR:F64555; match to protein family HMM PF00004; match to protein family HMM PF01434; cell division protein FtsH 1013729 3231594 CJE1085 Campylobacter jejuni RM1221 cell division protein FtsH YP_179078.1 1012113 R 195099 CDS YP_179079.1 57237831 3231595 complement(1013733..1014983) 1 NC_003912.7 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; MiaB-like tRNA modifying enzyme 1014983 3231595 CJE1086 Campylobacter jejuni RM1221 MiaB-like tRNA modifying enzyme YP_179079.1 1013733 R 195099 CDS YP_179080.1 57237832 3231596 complement(1014980..1016551) 1 NC_003912.7 identified by similarity to GP:12228607; match to protein family HMM PF00924; mechanosensitive ion channel family protein 1016551 3231596 CJE1087 Campylobacter jejuni RM1221 mechanosensitive ion channel family protein YP_179080.1 1014980 R 195099 CDS YP_179081.1 57237833 3231597 complement(1016548..1017603) 1 NC_003912.7 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1017603 aroB 3231597 aroB Campylobacter jejuni RM1221 3-dehydroquinate synthase YP_179081.1 1016548 R 195099 CDS YP_179082.1 57237834 3231598 complement(1017649..1019049) 1 NC_003912.7 identified by match to protein family HMM PF02080; TrkA domain-containing protein 1019049 3231598 CJE1089 Campylobacter jejuni RM1221 TrkA domain-containing protein YP_179082.1 1017649 R 195099 CDS YP_179083.1 57237835 3231599 1019079..1020200 1 NC_003912.7 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1020200 tgt 3231599 tgt Campylobacter jejuni RM1221 queuine tRNA-ribosyltransferase YP_179083.1 1019079 D 195099 CDS YP_179084.1 57237836 3231600 1020202..1020969 1 NC_003912.7 hypothetical protein 1020969 3231600 CJE1091 Campylobacter jejuni RM1221 hypothetical protein YP_179084.1 1020202 D 195099 CDS YP_179085.1 57237837 3231601 1021288..1021395 1 NC_003912.7 hypothetical protein 1021395 3231601 CJE1092 Campylobacter jejuni RM1221 hypothetical protein YP_179085.1 1021288 D 195099 CDS YP_179086.1 57237838 3231602 1021521..1021871 1 NC_003912.7 identified by similarity to PIR:A55205; hypothetical protein 1021871 3231602 CJE1093 Campylobacter jejuni RM1221 hypothetical protein YP_179086.1 1021521 D 195099 CDS YP_179087.1 57237839 3231603 complement(1021914..1022585) 1 NC_003912.7 identified by similarity to OMNI:HP0675; match to protein family HMM PF00589; phage integrase family site specific recombinase 1022585 3231603 CJE1094 Campylobacter jejuni RM1221 phage integrase family site specific recombinase YP_179087.1 1021914 R 195099 CDS YP_179088.1 57237840 3231604 complement(1022591..1022851) 1 NC_003912.7 hypothetical protein 1022851 3231604 CJE1095 Campylobacter jejuni RM1221 hypothetical protein YP_179088.1 1022591 R 195099 CDS YP_179089.1 57237841 3231605 1023081..1023311 1 NC_003912.7 identified by similarity to GP:4049707; hypothetical protein 1023311 3231605 CJE1096 Campylobacter jejuni RM1221 hypothetical protein YP_179089.1 1023081 D 195099 CDS YP_179090.1 57237842 3231606 complement(1023559..1023675) 1 NC_003912.7 hypothetical protein 1023675 3231606 CJE1097 Campylobacter jejuni RM1221 hypothetical protein YP_179090.1 1023559 R 195099 CDS YP_179091.1 57237843 3231607 complement(1023863..1024006) 1 NC_003912.7 hypothetical protein 1024006 3231607 CJE1098 Campylobacter jejuni RM1221 hypothetical protein YP_179091.1 1023863 R 195099 CDS YP_179092.1 57237844 3231608 complement(1024050..1024181) 1 NC_003912.7 hypothetical protein 1024181 3231608 CJE1099 Campylobacter jejuni RM1221 hypothetical protein YP_179092.1 1024050 R 195099 CDS YP_179093.1 57237845 3231609 complement(1024202..1024489) 1 NC_003912.7 identified by match to protein family HMM PF05012; death-on-curing family protein 1024489 3231609 CJE1100 Campylobacter jejuni RM1221 death-on-curing family protein YP_179093.1 1024202 R 195099 CDS YP_179094.1 57237846 3231610 complement(1024486..1024635) 1 NC_003912.7 hypothetical protein 1024635 3231610 CJE1101 Campylobacter jejuni RM1221 hypothetical protein YP_179094.1 1024486 R 195099 CDS YP_179095.1 57237847 3231611 1024907..1025134 1 NC_003912.7 hypothetical protein 1025134 3231611 CJE1102 Campylobacter jejuni RM1221 hypothetical protein YP_179095.1 1024907 D 195099 CDS YP_179096.1 57237848 3231612 1025103..1025402 1 NC_003912.7 identified by similarity to GP:20502858; match to protein family HMM PF03890; hypothetical protein 1025402 3231612 CJE1103 Campylobacter jejuni RM1221 hypothetical protein YP_179096.1 1025103 D 195099 CDS YP_179097.1 57237849 3231613 1025481..1025648 1 NC_003912.7 hypothetical protein 1025648 3231613 CJE1104 Campylobacter jejuni RM1221 hypothetical protein YP_179097.1 1025481 D 195099 CDS YP_179098.1 57237850 3231614 complement(1025669..1026223) 1 NC_003912.7 hypothetical protein 1026223 3231614 CJE1105 Campylobacter jejuni RM1221 hypothetical protein YP_179098.1 1025669 R 195099 CDS YP_179099.1 57237851 3231615 complement(1026192..1026596) 1 NC_003912.7 hypothetical protein 1026596 3231615 CJE1106 Campylobacter jejuni RM1221 hypothetical protein YP_179099.1 1026192 R 195099 CDS YP_179100.1 57237852 3231616 complement(1026778..1028367) 1 NC_003912.7 identified by similarity to GB:BAB93804.1; TraG-like protein 1028367 3231616 CJE1107 Campylobacter jejuni RM1221 TraG-like protein YP_179100.1 1026778 R 195099 CDS YP_179101.1 57237853 3231617 complement(1028406..1028567) 1 NC_003912.7 hypothetical protein 1028567 3231617 CJE1108 Campylobacter jejuni RM1221 hypothetical protein YP_179101.1 1028406 R 195099 CDS YP_179102.1 57237854 3231618 complement(1028815..1029615) 1 NC_003912.7 hypothetical protein 1029615 3231618 CJE1109 Campylobacter jejuni RM1221 hypothetical protein YP_179102.1 1028815 R 195099 CDS YP_179103.1 57237855 3231619 complement(1029669..1030955) 1 NC_003912.7 hypothetical protein 1030955 3231619 CJE1110 Campylobacter jejuni RM1221 hypothetical protein YP_179103.1 1029669 R 195099 CDS YP_179104.1 57237856 3231620 complement(1031031..1032317) 1 NC_003912.7 hypothetical protein 1032317 3231620 CJE1111 Campylobacter jejuni RM1221 hypothetical protein YP_179104.1 1031031 R 195099 CDS YP_179105.1 57237857 3231621 complement(1032328..1033065) 1 NC_003912.7 hypothetical protein 1033065 3231621 CJE1112 Campylobacter jejuni RM1221 hypothetical protein YP_179105.1 1032328 R 195099 CDS YP_179106.1 57237858 3231622 complement(1033187..1035799) 1 NC_003912.7 hypothetical protein 1035799 3231622 CJE1113 Campylobacter jejuni RM1221 hypothetical protein YP_179106.1 1033187 R 195099 CDS YP_179107.1 57237859 3231623 complement(1035796..1037226) 1 NC_003912.7 hypothetical protein 1037226 3231623 CJE1114 Campylobacter jejuni RM1221 hypothetical protein YP_179107.1 1035796 R 195099 CDS YP_179108.1 57237860 3231624 complement(1037234..1038736) 1 NC_003912.7 identified by similarity to OMNI:NTL01XA0571; hypothetical protein 1038736 3231624 CJE1115 Campylobacter jejuni RM1221 hypothetical protein YP_179108.1 1037234 R 195099 CDS YP_179109.1 57237861 3231625 complement(1038746..1039051) 1 NC_003912.7 hypothetical protein 1039051 3231625 CJE1116 Campylobacter jejuni RM1221 hypothetical protein YP_179109.1 1038746 R 195099 CDS YP_179110.1 57237862 3231626 complement(1039102..1039593) 1 NC_003912.7 identified by similarity to OMNI:NTL01XA0571; hypothetical protein 1039593 3231626 CJE1117 Campylobacter jejuni RM1221 hypothetical protein YP_179110.1 1039102 R 195099 CDS YP_179111.1 57237863 3231627 complement(1040222..1040458) 1 NC_003912.7 hypothetical protein 1040458 3231627 CJE1118 Campylobacter jejuni RM1221 hypothetical protein YP_179111.1 1040222 R 195099 CDS YP_179112.1 57237864 3231628 1040538..1040756 1 NC_003912.7 hypothetical protein 1040756 3231628 CJE1119 Campylobacter jejuni RM1221 hypothetical protein YP_179112.1 1040538 D 195099 CDS YP_179113.1 57237865 3231629 1040819..1040950 1 NC_003912.7 hypothetical protein 1040950 3231629 CJE1120 Campylobacter jejuni RM1221 hypothetical protein YP_179113.1 1040819 D 195099 CDS YP_179114.1 57237866 3231631 complement(1042357..1042590) 1 NC_003912.7 hypothetical protein 1042590 3231631 CJE1122 Campylobacter jejuni RM1221 hypothetical protein YP_179114.1 1042357 R 195099 CDS YP_179115.1 57237867 3231632 complement(1042587..1042874) 1 NC_003912.7 hypothetical protein 1042874 3231632 CJE1123 Campylobacter jejuni RM1221 hypothetical protein YP_179115.1 1042587 R 195099 CDS YP_179116.1 57237868 3231633 complement(1043022..1043564) 1 NC_003912.7 identified by similarity to OMNI:NTL01CE0348; hypothetical protein 1043564 3231633 CJE1124 Campylobacter jejuni RM1221 hypothetical protein YP_179116.1 1043022 R 195099 CDS YP_179117.1 57237869 3231634 complement(1043806..1043925) 1 NC_003912.7 hypothetical protein 1043925 3231634 CJE1125 Campylobacter jejuni RM1221 hypothetical protein YP_179117.1 1043806 R 195099 CDS YP_179118.1 57237870 3231635 complement(1043942..1044208) 1 NC_003912.7 hypothetical protein 1044208 3231635 CJE1126 Campylobacter jejuni RM1221 hypothetical protein YP_179118.1 1043942 R 195099 CDS YP_179119.1 57237871 3231636 complement(1044211..1044771) 1 NC_003912.7 hypothetical protein 1044771 3231636 CJE1127 Campylobacter jejuni RM1221 hypothetical protein YP_179119.1 1044211 R 195099 CDS YP_179120.1 57237872 3231637 complement(1044811..1044939) 1 NC_003912.7 hypothetical protein 1044939 3231637 CJE1128 Campylobacter jejuni RM1221 hypothetical protein YP_179120.1 1044811 R 195099 CDS YP_179121.1 57237873 3231638 complement(1045351..1045557) 1 NC_003912.7 hypothetical protein 1045557 3231638 CJE1129 Campylobacter jejuni RM1221 hypothetical protein YP_179121.1 1045351 R 195099 CDS YP_179122.1 57237874 3231639 1045630..1046097 1 NC_003912.7 hypothetical protein 1046097 3231639 CJE1130 Campylobacter jejuni RM1221 hypothetical protein YP_179122.1 1045630 D 195099 CDS YP_179123.1 57237875 3231640 1046112..1046321 1 NC_003912.7 hypothetical protein 1046321 3231640 CJE1131 Campylobacter jejuni RM1221 hypothetical protein YP_179123.1 1046112 D 195099 CDS YP_179124.1 57237876 3231641 1046363..1046788 1 NC_003912.7 hypothetical protein 1046788 3231641 CJE1132 Campylobacter jejuni RM1221 hypothetical protein YP_179124.1 1046363 D 195099 CDS YP_179125.1 57237877 3231642 1046785..1047834 1 NC_003912.7 hypothetical protein 1047834 3231642 CJE1133 Campylobacter jejuni RM1221 hypothetical protein YP_179125.1 1046785 D 195099 CDS YP_179126.1 57237878 3231643 1047837..1048079 1 NC_003912.7 hypothetical protein 1048079 3231643 CJE1134 Campylobacter jejuni RM1221 hypothetical protein YP_179126.1 1047837 D 195099 CDS YP_179127.1 57237879 3231644 1048069..1049937 1 NC_003912.7 hypothetical protein 1049937 3231644 CJE1135 Campylobacter jejuni RM1221 hypothetical protein YP_179127.1 1048069 D 195099 CDS YP_179128.1 57237880 3231645 1049927..1050673 1 NC_003912.7 hypothetical protein 1050673 3231645 CJE1136 Campylobacter jejuni RM1221 hypothetical protein YP_179128.1 1049927 D 195099 CDS YP_179129.1 57237881 3231646 1050718..1054650 1 NC_003912.7 identified by similarity to GB:AAP76852.1; hypothetical protein 1054650 3231646 CJE1137 Campylobacter jejuni RM1221 hypothetical protein YP_179129.1 1050718 D 195099 CDS YP_179130.1 57237882 3231647 1054669..1055937 1 NC_003912.7 hypothetical protein 1055937 3231647 CJE1138 Campylobacter jejuni RM1221 hypothetical protein YP_179130.1 1054669 D 195099 CDS YP_179131.1 57237883 3231648 complement(1055941..1056840) 1 NC_003912.7 hypothetical protein 1056840 3231648 CJE1139 Campylobacter jejuni RM1221 hypothetical protein YP_179131.1 1055941 R 195099 CDS YP_179132.1 57237884 3231650 1057767..1059182 1 NC_003912.7 hypothetical protein 1059182 3231650 CJE1141 Campylobacter jejuni RM1221 hypothetical protein YP_179132.1 1057767 D 195099 CDS YP_179133.1 57237885 3231651 1059374..1060270 1 NC_003912.7 hypothetical protein 1060270 3231651 CJE1142 Campylobacter jejuni RM1221 hypothetical protein YP_179133.1 1059374 D 195099 CDS YP_179134.1 57237886 3231652 1060350..1061093 1 NC_003912.7 hypothetical protein 1061093 3231652 CJE1143 Campylobacter jejuni RM1221 hypothetical protein YP_179134.1 1060350 D 195099 CDS YP_179135.1 57237887 3231653 1061080..1061184 1 NC_003912.7 hypothetical protein 1061184 3231653 CJE1144 Campylobacter jejuni RM1221 hypothetical protein YP_179135.1 1061080 D 195099 CDS YP_179136.1 57237888 3231654 1061185..1061529 1 NC_003912.7 hypothetical protein 1061529 3231654 CJE1145 Campylobacter jejuni RM1221 hypothetical protein YP_179136.1 1061185 D 195099 CDS YP_179137.1 57237889 3231655 1061519..1062595 1 NC_003912.7 hypothetical protein 1062595 3231655 CJE1146 Campylobacter jejuni RM1221 hypothetical protein YP_179137.1 1061519 D 195099 CDS YP_179138.1 57237890 3231656 1062598..1063611 1 NC_003912.7 hypothetical protein 1063611 3231656 CJE1147 Campylobacter jejuni RM1221 hypothetical protein YP_179138.1 1062598 D 195099 CDS YP_179139.1 57237891 3231657 1063657..1064526 1 NC_003912.7 hypothetical protein 1064526 3231657 CJE1148 Campylobacter jejuni RM1221 hypothetical protein YP_179139.1 1063657 D 195099 CDS YP_179140.1 57237892 3231658 1064519..1064635 1 NC_003912.7 hypothetical protein 1064635 3231658 CJE1149 Campylobacter jejuni RM1221 hypothetical protein YP_179140.1 1064519 D 195099 CDS YP_179141.1 57237893 3231659 1064610..1065374 1 NC_003912.7 hypothetical protein 1065374 3231659 CJE1150 Campylobacter jejuni RM1221 hypothetical protein YP_179141.1 1064610 D 195099 CDS YP_179142.1 57237894 3231660 1065358..1068297 1 NC_003912.7 hypothetical protein 1068297 3231660 CJE1151 Campylobacter jejuni RM1221 hypothetical protein YP_179142.1 1065358 D 195099 CDS YP_179143.1 57237895 3231661 1068290..1069546 1 NC_003912.7 hypothetical protein 1069546 3231661 CJE1152 Campylobacter jejuni RM1221 hypothetical protein YP_179143.1 1068290 D 195099 CDS YP_179144.1 57237896 3231662 1069546..1070808 1 NC_003912.7 hypothetical protein 1070808 3231662 CJE1153 Campylobacter jejuni RM1221 hypothetical protein YP_179144.1 1069546 D 195099 CDS YP_179145.1 57237897 3231663 1070821..1071033 1 NC_003912.7 hypothetical protein 1071033 3231663 CJE1154 Campylobacter jejuni RM1221 hypothetical protein YP_179145.1 1070821 D 195099 CDS YP_179146.1 57237898 3231664 1071640..1071756 1 NC_003912.7 hypothetical protein 1071756 3231664 CJE1155 Campylobacter jejuni RM1221 hypothetical protein YP_179146.1 1071640 D 195099 CDS YP_179147.1 57237899 3231665 complement(1071875..1072339) 1 NC_003912.7 hypothetical protein 1072339 3231665 CJE1156 Campylobacter jejuni RM1221 hypothetical protein YP_179147.1 1071875 R 195099 CDS YP_179148.1 57237900 3231666 complement(1072340..1075585) 1 NC_003912.7 identified by match to protein family HMM PF01578; CcmF/CcyK/CcsA family cytochrome C biogenesis protein 1075585 3231666 CJE1157 Campylobacter jejuni RM1221 CcmF/CcyK/CcsA family cytochrome C biogenesis protein YP_179148.1 1072340 R 195099 CDS YP_179149.1 57237901 3231667 complement(1075603..1076298) 1 NC_003912.7 identified by similarity to SP:P22731; match to protein family HMM PF00005; branched-chain amino acid ABC transporter ATP-binding protein 1076298 livF 3231667 livF Campylobacter jejuni RM1221 branched-chain amino acid ABC transporter ATP-binding protein YP_179149.1 1075603 R 195099 CDS YP_179150.1 57237902 3231668 complement(1076285..1077055) 1 NC_003912.7 identified by similarity to SP:P22730; match to protein family HMM PF00005; branched-chain amino acid ABC transporter ATP-binding protein 1077055 livG 3231668 livG Campylobacter jejuni RM1221 branched-chain amino acid ABC transporter ATP-binding protein YP_179150.1 1076285 R 195099 CDS YP_179151.1 57237903 3231669 complement(1077052..1078104) 1 NC_003912.7 identified by match to protein family HMM PF02653; high affinity branched-chain amino acid ABC transporter permease 1078104 livM 3231669 livM Campylobacter jejuni RM1221 high affinity branched-chain amino acid ABC transporter permease YP_179151.1 1077052 R 195099 CDS YP_179152.1 57237904 3231670 complement(1078104..1079000) 1 NC_003912.7 identified by similarity to SP:P08340; match to protein family HMM PF02653; branched-chain amino acid ABC transporter permease 1079000 livH 3231670 livH Campylobacter jejuni RM1221 branched-chain amino acid ABC transporter permease YP_179152.1 1078104 R 195099 CDS YP_179153.1 57237905 3231671 complement(1079019..1080128) 1 NC_003912.7 identified by similarity to SP:P02917; match to protein family HMM PF01094; high affinity branched-chain amino acid ABC transporter periplasmic amino acid-binding protein 1080128 3231671 CJE1162 Campylobacter jejuni RM1221 high affinity branched-chain amino acid ABC transporter periplasmic amino acid-binding protein YP_179153.1 1079019 R 195099 CDS YP_179154.1 57237906 3231672 complement(1080150..1081265) 1 NC_003912.7 identified by similarity to SP:P17215; match to protein family HMM PF01094; high affinity branched-chain amino acid ABC transporter periplasmic amino acid-binding protein 1081265 3231672 CJE1163 Campylobacter jejuni RM1221 high affinity branched-chain amino acid ABC transporter periplasmic amino acid-binding protein YP_179154.1 1080150 R 195099 CDS YP_179155.1 57237907 3231673 complement(1081296..1081730) 1 NC_003912.7 identified by match to protein family HMM PF00034; cytochrome C family protein 1081730 3231673 CJE1164 Campylobacter jejuni RM1221 cytochrome C family protein YP_179155.1 1081296 R 195099 CDS YP_179156.1 57237908 3231674 complement(1081739..1081930) 1 NC_003912.7 identified by similarity to GP:9965827; porin domain-containing protein 1081930 3231674 CJE1165 Campylobacter jejuni RM1221 porin domain-containing protein YP_179156.1 1081739 R 195099 CDS YP_179157.1 57237909 3231675 complement(1081983..1082489) 1 NC_003912.7 identified by similarity to OMNI:NTL01AA00210; hypothetical protein 1082489 3231675 CJE1166 Campylobacter jejuni RM1221 hypothetical protein YP_179157.1 1081983 R 195099 CDS YP_179158.1 57237910 3231676 complement(1082498..1083529) 1 NC_003912.7 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1083529 asd 3231676 asd Campylobacter jejuni RM1221 aspartate-semialdehyde dehydrogenase YP_179158.1 1082498 R 195099 CDS YP_179159.1 57237911 3231677 complement(1083529..1084830) 1 NC_003912.7 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator 1084830 3231677 CJE1168 Campylobacter jejuni RM1221 sigma-54 dependent DNA-binding response regulator YP_179159.1 1083529 R 195099 CDS YP_179160.1 57237912 3231678 complement(1084887..1085336) 1 NC_003912.7 hypothetical protein 1085336 3231678 CJE1169 Campylobacter jejuni RM1221 hypothetical protein YP_179160.1 1084887 R 195099 CDS YP_179161.1 57237913 3231679 complement(1085312..1085827) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00768; match to protein family HMM PF04164; lipoprotein 1085827 3231679 CJE1170 Campylobacter jejuni RM1221 lipoprotein YP_179161.1 1085312 R 195099 CDS YP_179162.1 57237914 3231680 complement(1085894..1088482) 1 NC_003912.7 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1088482 gyrA 3231680 gyrA Campylobacter jejuni RM1221 DNA gyrase subunit A YP_179162.1 1085894 R 195099 CDS YP_179163.1 57237915 3231681 complement(1088523..1089098) 1 NC_003912.7 identified by similarity to PIR:A81305; transformation system protein 1089098 ctsW 3231681 ctsW Campylobacter jejuni RM1221 transformation system protein YP_179163.1 1088523 R 195099 CDS YP_179164.1 57237916 3231682 complement(1089095..1089739) 1 NC_003912.7 identified by similarity to SP:Q46122; outer membrane liproprotein MapA 1089739 mapA 3231682 mapA Campylobacter jejuni RM1221 outer membrane liproprotein MapA YP_179164.1 1089095 R 195099 CDS YP_179165.1 57237917 3231683 complement(1089816..1091612) 1 NC_003912.7 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1091612 lepA 3231683 lepA Campylobacter jejuni RM1221 GTP-binding protein LepA YP_179165.1 1089816 R 195099 CDS YP_179166.1 57237918 3231685 1093009..1093749 1 NC_003912.7 identified by similarity to OMNI:HP0606; hypothetical protein 1093749 3231685 CJE1176 Campylobacter jejuni RM1221 hypothetical protein YP_179166.1 1093009 D 195099 CDS YP_179167.1 57237919 3231686 1093752..1096769 1 NC_003912.7 identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein 1096769 3231686 CJE1177 Campylobacter jejuni RM1221 AcrB/AcrD/AcrF family protein YP_179167.1 1093752 D 195099 CDS YP_179168.1 57237920 3231687 complement(1096793..1097599) 1 NC_003912.7 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1097599 3231687 CJE1178 Campylobacter jejuni RM1221 adenylosuccinate lyase YP_179168.1 1096793 R 195099 CDS YP_179169.1 57237921 3231688 complement(1097600..1098319) 1 NC_003912.7 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 1098319 3231688 CJE1179 Campylobacter jejuni RM1221 arginyl-tRNA-protein transferase YP_179169.1 1097600 R 195099 CDS YP_179170.1 57237922 3231689 complement(1098319..1098570) 1 NC_003912.7 identified by similarity to GP:19979583; hypothetical protein 1098570 3231689 CJE1180 Campylobacter jejuni RM1221 hypothetical protein YP_179170.1 1098319 R 195099 CDS YP_179171.1 57237923 3231690 complement(1098574..1100019) 1 NC_003912.7 biotin carboxylase; catalyses the carboxylation of the carrier protein which then transfers the carboxyl group to form malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase subunit A 1100019 accC-1 3231690 accC-1 Campylobacter jejuni RM1221 acetyl-CoA carboxylase subunit A YP_179171.1 1098574 R 195099 CDS YP_179172.1 57237924 3231691 1100159..1101322 1 NC_003912.7 identified by match to protein family HMM PF01098; cell cycle protein FtsW 1101322 3231691 CJE1182 Campylobacter jejuni RM1221 cell cycle protein FtsW YP_179172.1 1100159 D 195099 CDS YP_179173.1 57237925 3231692 1101319..1102347 1 NC_003912.7 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1102347 murG 3231692 murG Campylobacter jejuni RM1221 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_179173.1 1101319 D 195099 CDS YP_179174.1 57237926 3231693 complement(1102318..1103481) 1 NC_003912.7 identified by similarity to SP:P76242; hypothetical protein 1103481 3231693 CJE1184 Campylobacter jejuni RM1221 hypothetical protein YP_179174.1 1102318 R 195099 CDS YP_179175.1 57237927 3231694 complement(1103489..1104340) 1 NC_003912.7 identified by similarity to OMNI:NTL02ML3528; hypothetical protein 1104340 3231694 CJE1185 Campylobacter jejuni RM1221 hypothetical protein YP_179175.1 1103489 R 195099 CDS YP_179176.1 57237928 3231695 complement(1104403..1105293) 1 NC_003912.7 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1105293 3231695 CJE1186 Campylobacter jejuni RM1221 AraC family transcriptional regulator YP_179176.1 1104403 R 195099 CDS YP_179177.1 57237929 3231696 complement(1105290..1105895) 1 NC_003912.7 thiamine-phosphate pyrophosphorylase 1105895 3231696 CJE1187 Campylobacter jejuni RM1221 thiamine-phosphate pyrophosphorylase YP_179177.1 1105290 R 195099 CDS YP_179178.1 57237930 3231697 complement(1105885..1107030) 1 NC_003912.7 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 1107030 thiH 3231697 thiH Campylobacter jejuni RM1221 thiamine biosynthesis protein ThiH YP_179178.1 1105885 R 195099 CDS YP_179179.1 57237931 3231698 complement(1107033..1107809) 1 NC_003912.7 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 1107809 thiG 3231698 thiG Campylobacter jejuni RM1221 thiazole synthase YP_179179.1 1107033 R 195099 CDS YP_179180.1 57237932 3231699 complement(1107812..1108615) 1 NC_003912.7 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 1108615 thiF 3231699 thiF Campylobacter jejuni RM1221 thiamine biosynthesis protein ThiF YP_179180.1 1107812 R 195099 CDS YP_179181.1 57237933 3231700 complement(1108612..1108803) 1 NC_003912.7 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 1108803 thiS 3231700 thiS Campylobacter jejuni RM1221 thiamine biosynthesis protein ThiS YP_179181.1 1108612 R 195099 CDS YP_179182.1 57237934 3231701 complement(1108813..1109910) 1 NC_003912.7 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1109910 dapE 3231701 dapE Campylobacter jejuni RM1221 succinyl-diaminopimelate desuccinylase YP_179182.1 1108813 R 195099 CDS YP_179183.1 57237935 3231702 complement(1109915..1110514) 1 NC_003912.7 identified by similarity to OMNI:NTL04PA0868; match to protein family HMM PF01810; amino acid transporter LysE 1110514 3231702 CJE1193 Campylobacter jejuni RM1221 amino acid transporter LysE YP_179183.1 1109915 R 195099 CDS YP_179184.1 57237936 3231703 complement(1110507..1111208) 1 NC_003912.7 identified by similarity to SP:P97013; match to protein family HMM PF02146; NAD-dependent deacetylase 1111208 3231703 CJE1194 Campylobacter jejuni RM1221 NAD-dependent deacetylase YP_179184.1 1110507 R 195099 CDS YP_179185.1 57237937 3231704 complement(1111251..1115282) 1 NC_003912.7 identified by similarity to GP:8572748; match to protein family HMM PF01420; type II restriction-modification enzyme 1115282 3231704 CJE1195 Campylobacter jejuni RM1221 type II restriction-modification enzyme YP_179185.1 1111251 R 195099 CDS YP_179186.1 57237938 3231705 complement(1115291..1117498) 1 NC_003912.7 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 1117498 mutS 3231705 mutS Campylobacter jejuni RM1221 recombination and DNA strand exchange inhibitor protein YP_179186.1 1115291 R 195099 CDS YP_179187.1 57237939 3231706 complement(1117491..1117841) 1 NC_003912.7 identified by similarity to OMNI:HP0622; hypothetical protein 1117841 3231706 CJE1197 Campylobacter jejuni RM1221 hypothetical protein YP_179187.1 1117491 R 195099 CDS YP_179188.1 57237940 3231707 complement(1117834..1119129) 1 NC_003912.7 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1119129 murC 3231707 murC Campylobacter jejuni RM1221 UDP-N-acetylmuramate--L-alanine ligase YP_179188.1 1117834 R 195099 CDS YP_179189.1 57237941 3231708 complement(1119253..1120035) 1 NC_003912.7 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 1120035 3231708 CJE1199 Campylobacter jejuni RM1221 carbon-nitrogen family hydrolase YP_179189.1 1119253 R 195099 CDS YP_179190.1 57237942 3231709 complement(1120028..1120201) 1 NC_003912.7 identified by similarity to SP:Q9X290; exodeoxyribonuclease VII, small subunit 1120201 3231709 CJE1200 Campylobacter jejuni RM1221 exodeoxyribonuclease VII, small subunit YP_179190.1 1120028 R 195099 CDS YP_179191.1 57237943 3231710 complement(1120198..1121655) 1 NC_003912.7 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1121655 guaB 3231710 guaB Campylobacter jejuni RM1221 inosine 5'-monophosphate dehydrogenase YP_179191.1 1120198 R 195099 CDS YP_179192.1 57237944 3231711 complement(1121665..1123026) 1 NC_003912.7 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1123026 gatA 3231711 gatA Campylobacter jejuni RM1221 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_179192.1 1121665 R 195099 CDS YP_179193.1 57237945 3231712 complement(1123023..1123133) 1 NC_003912.7 hypothetical protein 1123133 3231712 CJE1203 Campylobacter jejuni RM1221 hypothetical protein YP_179193.1 1123023 R 195099 CDS YP_179194.1 57237946 3231713 complement(1123127..1125880) 1 NC_003912.7 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1125880 ileS 3231713 ileS Campylobacter jejuni RM1221 isoleucyl-tRNA synthetase YP_179194.1 1123127 R 195099 CDS YP_179195.1 57237947 3231714 1125979..1127067 1 NC_003912.7 identified by similarity to GP:29338222; match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage-inducible domain-containing protein 1127067 3231714 CJE1205 Campylobacter jejuni RM1221 competence/damage-inducible domain-containing protein YP_179195.1 1125979 D 195099 CDS YP_179196.1 57237948 3231715 1127079..1127504 1 NC_003912.7 identified by match to protein family HMM PF00583; acetyltransferase 1127504 3231715 CJE1206 Campylobacter jejuni RM1221 acetyltransferase YP_179196.1 1127079 D 195099 CDS YP_179197.1 57238716 3232504 1128189..1128794 1 NC_003912.7 identified by match to protein family HMM PF00881; nitroreductase 1128794 3232504 CJE1209 Campylobacter jejuni RM1221 nitroreductase YP_179197.1 1128189 D 195099 CDS YP_179198.1 57237949 3231717 1128920..1129456 1 NC_003912.7 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1129456 pgsA 3231717 pgsA Campylobacter jejuni RM1221 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_179198.1 1128920 D 195099 CDS YP_179199.1 57237950 3231718 1129453..1130559 1 NC_003912.7 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease 1130559 3231718 CJE1211 Campylobacter jejuni RM1221 membrane-associated zinc metalloprotease YP_179199.1 1129453 D 195099 CDS YP_179200.1 57237951 3231719 1130552..1131418 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01014; match to protein family HMM PF04393; hypothetical protein 1131418 3231719 CJE1212 Campylobacter jejuni RM1221 hypothetical protein YP_179200.1 1130552 D 195099 CDS YP_179201.1 57237952 3231720 1131505..1131882 1 NC_003912.7 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1131882 rpsF 3231720 rpsF Campylobacter jejuni RM1221 30S ribosomal protein S6 YP_179201.1 1131505 D 195099 CDS YP_179202.1 57237953 3231721 1131891..1132439 1 NC_003912.7 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1132439 ssb 3231721 ssb Campylobacter jejuni RM1221 single-stranded DNA-binding protein YP_179202.1 1131891 D 195099 CDS YP_179203.1 57237954 3231722 1132450..1132710 1 NC_003912.7 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1132710 rpsR 3231722 rpsR Campylobacter jejuni RM1221 30S ribosomal protein S18 YP_179203.1 1132450 D 195099 CDS YP_179204.1 57237955 3231723 complement(1132770..1135145) 1 NC_003912.7 identified by similarity to SP:P37945; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; ATP-dependent protease La 1135145 lon 3231723 lon Campylobacter jejuni RM1221 ATP-dependent protease La YP_179204.1 1132770 R 195099 CDS YP_179205.1 57237956 3231724 complement(1135162..1135809) 1 NC_003912.7 identified by similarity to OMNI:HP1378; lipoprotein 1135809 3231724 CJE1217 Campylobacter jejuni RM1221 lipoprotein YP_179205.1 1135162 R 195099 CDS YP_179206.1 57237957 3231725 1135970..1136359 1 NC_003912.7 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 1136359 3231725 CJE1218 Campylobacter jejuni RM1221 flagellar assembly protein FliW YP_179206.1 1135970 D 195099 CDS YP_179207.1 57237958 3231726 1136359..1137090 1 NC_003912.7 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 1137090 proC 3231726 proC Campylobacter jejuni RM1221 pyrroline-5-carboxylate reductase YP_179207.1 1136359 D 195099 CDS YP_179208.1 57237959 3231727 1137087..1137389 1 NC_003912.7 identified by similarity to PIR:H81310; transformation system protein 1137389 ctsT 3231727 ctsT Campylobacter jejuni RM1221 transformation system protein YP_179208.1 1137087 D 195099 CDS YP_179209.1 57237960 3231728 1137386..1138048 1 NC_003912.7 hypothetical protein 1138048 3231728 CJE1221 Campylobacter jejuni RM1221 hypothetical protein YP_179209.1 1137386 D 195099 CDS YP_179210.1 57237961 3231729 1138045..1138497 1 NC_003912.7 identified by similarity to SP:Q58789; hypothetical protein 1138497 3231729 CJE1222 Campylobacter jejuni RM1221 hypothetical protein YP_179210.1 1138045 D 195099 CDS YP_179211.1 57237962 3231730 complement(1138494..1139123) 1 NC_003912.7 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 1139123 hemD 3231730 hemD Campylobacter jejuni RM1221 uroporphyrinogen-III synthase YP_179211.1 1138494 R 195099 CDS YP_179212.1 57237963 3231731 complement(1139101..1139733) 1 NC_003912.7 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase 1139733 thiE 3231731 thiE Campylobacter jejuni RM1221 thiamine-phosphate pyrophosphorylase YP_179212.1 1139101 R 195099 CDS YP_179213.1 57237964 3231732 complement(1139723..1140535) 1 NC_003912.7 identified by match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 1140535 thiD 3231732 thiD Campylobacter jejuni RM1221 phosphomethylpyrimidine kinase YP_179213.1 1139723 R 195099 CDS YP_179214.1 57237965 3231733 complement(1140532..1141218) 1 NC_003912.7 identified by similarity to GP:14325535; match to protein family HMM PF00633; match to protein family HMM PF00730; endonuclease III 1141218 3231733 CJE1226 Campylobacter jejuni RM1221 endonuclease III YP_179214.1 1140532 R 195099 CDS YP_179215.1 57237966 3231734 complement(1141215..1141976) 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01028; match to protein family HMM PF05673; hypothetical protein 1141976 3231734 CJE1227 Campylobacter jejuni RM1221 hypothetical protein YP_179215.1 1141215 R 195099 CDS YP_179216.1 57237967 3231735 complement(1141978..1144914) 1 NC_003912.7 identified by similarity to SP:P37474; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580; transcription-repair coupling factor 1144914 mfd 3231735 mfd Campylobacter jejuni RM1221 transcription-repair coupling factor YP_179216.1 1141978 R 195099 CDS YP_179217.1 57237968 3231736 complement(1144914..1145309) 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01030; match to protein family HMM PF04519; hypothetical protein 1145309 3231736 CJE1229 Campylobacter jejuni RM1221 hypothetical protein YP_179217.1 1144914 R 195099 CDS YP_179218.1 57237969 3231737 complement(1145246..1146148) 1 NC_003912.7 identified by match to protein family HMM PF01551; M24/M37 family peptidase 1146148 3231737 CJE1230 Campylobacter jejuni RM1221 M24/M37 family peptidase YP_179218.1 1145246 R 195099 CDS YP_179219.1 57237970 3231738 complement(1146135..1147307) 1 NC_003912.7 identified by match to protein family HMM TIGR01499; folC bifunctional protein 1147307 folC 3231738 folC Campylobacter jejuni RM1221 folC bifunctional protein YP_179219.1 1146135 R 195099 CDS YP_179220.1 57237971 3231739 complement(1147285..1148682) 1 NC_003912.7 hypothetical protein 1148682 3231739 CJE1232 Campylobacter jejuni RM1221 hypothetical protein YP_179220.1 1147285 R 195099 CDS YP_179221.1 57237972 3231740 complement(1148666..1149178) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP01442; lipoprotein 1149178 3231740 CJE1233 Campylobacter jejuni RM1221 lipoprotein YP_179221.1 1148666 R 195099 CDS YP_179222.1 57237973 3231741 complement(1149175..1151604) 1 NC_003912.7 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1151604 leuS 3231741 leuS Campylobacter jejuni RM1221 leucyl-tRNA synthetase YP_179222.1 1149175 R 195099 CDS YP_179223.1 57237974 3231742 complement(1151614..1152585) 1 NC_003912.7 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1152585 secF 3231742 secF Campylobacter jejuni RM1221 preprotein translocase subunit SecF YP_179223.1 1151614 R 195099 CDS YP_179224.1 57237975 3231743 complement(1152585..1154165) 1 NC_003912.7 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1154165 secD 3231743 secD Campylobacter jejuni RM1221 preprotein translocase subunit SecD YP_179224.1 1152585 R 195099 CDS YP_179225.1 57237976 3231744 complement(1154158..1154430) 1 NC_003912.7 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1154430 yajC 3231744 yajC Campylobacter jejuni RM1221 preprotein translocase subunit YajC YP_179225.1 1154158 R 195099 CDS YP_179226.1 57237977 3231745 1154403..1155728 1 NC_003912.7 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 1155728 cutE 3231745 cutE Campylobacter jejuni RM1221 apolipoprotein N-acyltransferase YP_179226.1 1154403 D 195099 CDS YP_179227.1 57237978 3231746 complement(1155965..1157176) 1 NC_003912.7 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1157176 metK 3231746 metK Campylobacter jejuni RM1221 S-adenosylmethionine synthetase YP_179227.1 1155965 R 195099 CDS YP_179228.1 57237979 3231747 1157301..1158524 1 NC_003912.7 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 1158524 3231747 CJE1240 Campylobacter jejuni RM1221 serine/threonine transporter SstT YP_179228.1 1157301 D 195099 CDS YP_179229.1 57237980 3231748 1158534..1159421 1 NC_003912.7 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1159421 pyrB 3231748 pyrB Campylobacter jejuni RM1221 aspartate carbamoyltransferase catalytic subunit YP_179229.1 1158534 D 195099 CDS YP_179230.1 57237981 3231749 1159425..1161146 1 NC_003912.7 identified by similarity to SP:P94876; match to protein family HMM PF01432; match to protein family HMM TIGR00181; oligoendopeptidase F 1161146 pepF 3231749 pepF Campylobacter jejuni RM1221 oligoendopeptidase F YP_179230.1 1159425 D 195099 CDS YP_179231.1 57237982 3231750 1161140..1161577 1 NC_003912.7 identified by similarity to OMNI:HP0469; hypothetical protein 1161577 3231750 CJE1243 Campylobacter jejuni RM1221 hypothetical protein YP_179231.1 1161140 D 195099 CDS YP_179232.1 57237983 3231751 1161574..1163649 1 NC_003912.7 identified by similarity to SP:Q53727; match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD 1163649 3231751 CJE1244 Campylobacter jejuni RM1221 ATP-dependent DNA helicase UvrD YP_179232.1 1161574 D 195099 CDS YP_179233.1 57237984 3231752 1163646..1164464 1 NC_003912.7 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1164464 truB 3231752 truB Campylobacter jejuni RM1221 tRNA pseudouridine synthase B YP_179233.1 1163646 D 195099 CDS YP_179234.1 57237985 3231753 1164458..1164685 1 NC_003912.7 identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator 1164685 csrA 3231753 csrA Campylobacter jejuni RM1221 carbon storage regulator YP_179234.1 1164458 D 195099 CDS YP_179235.1 57237986 3231754 1164682..1165449 1 NC_003912.7 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1165449 ispE 3231754 ispE Campylobacter jejuni RM1221 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_179235.1 1164682 D 195099 CDS YP_179236.1 57237987 3231755 1165446..1165898 1 NC_003912.7 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1165898 smpB 3231755 smpB Campylobacter jejuni RM1221 SsrA-binding protein YP_179236.1 1165446 D 195099 CDS YP_179237.1 57237988 3231756 1165909..1166511 1 NC_003912.7 identified by similarity to GB:AAO81196.1; thioredoxin 1166511 3231756 CJE1249 Campylobacter jejuni RM1221 thioredoxin YP_179237.1 1165909 D 195099 CDS YP_179238.1 57237989 3231757 1166511..1166801 1 NC_003912.7 identified by similarity to SP:Q9JZZ5; match to protein family HMM PF02617; hypothetical protein 1166801 3231757 CJE1250 Campylobacter jejuni RM1221 hypothetical protein YP_179238.1 1166511 D 195099 CDS YP_179239.1 57237990 3231758 1166798..1168927 1 NC_003912.7 identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent Clp protease ATP-binding subunit ClpA 1168927 clpA 3231758 clpA Campylobacter jejuni RM1221 ATP-dependent Clp protease ATP-binding subunit ClpA YP_179239.1 1166798 D 195099 CDS YP_179240.1 57237991 3231759 1168902..1169549 1 NC_003912.7 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1169549 aat 3231759 aat Campylobacter jejuni RM1221 leucyl/phenylalanyl-tRNA--protein transferase YP_179240.1 1168902 D 195099 CDS YP_179241.1 57237992 3231760 complement(1169571..1170860) 1 NC_003912.7 identified by similarity to GB:AAQ59129.1; match to protein family HMM PF00015; match to protein family HMM PF00785; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 1170860 3231760 CJE1253 Campylobacter jejuni RM1221 methyl-accepting chemotaxis protein YP_179241.1 1169571 R 195099 CDS YP_179242.1 57237993 3231761 complement(1170941..1171567) 1 NC_003912.7 identified by match to protein family HMM PF01914; MarC family integral membrane protein 1171567 3231761 CJE1254 Campylobacter jejuni RM1221 MarC family integral membrane protein YP_179242.1 1170941 R 195099 CDS YP_179243.1 57237994 3231762 complement(1171582..1171941) 1 NC_003912.7 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; a fusion protein of this enzyme with MsrA and thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; methionine sulfoxide reductase B 1171941 msrB 3231762 msrB Campylobacter jejuni RM1221 methionine sulfoxide reductase B YP_179243.1 1171582 R 195099 CDS YP_179244.1 57237995 3231763 1172031..1172828 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01057; match to protein family HMM PF04305; hypothetical protein 1172828 3231763 CJE1256 Campylobacter jejuni RM1221 hypothetical protein YP_179244.1 1172031 D 195099 CDS YP_179245.1 57237996 3231764 complement(1172819..1173547) 1 NC_003912.7 identified by similarity to SP:Q48269; match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 1173547 pssA 3231764 pssA Campylobacter jejuni RM1221 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_179245.1 1172819 R 195099 CDS YP_179246.1 57237997 3231765 complement(1173557..1174174) 1 NC_003912.7 phosphatidylserine decarboxylase-related protein 1174174 3231765 CJE1258 Campylobacter jejuni RM1221 phosphatidylserine decarboxylase-related protein YP_179246.1 1173557 R 195099 CDS YP_179247.1 57237998 3231766 complement(1174171..1176108) 1 NC_003912.7 identified by similarity to SP:P71408; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM TIGR01241; cell division protein FtsH 1176108 ftsH 3231766 ftsH Campylobacter jejuni RM1221 cell division protein FtsH YP_179247.1 1174171 R 195099 CDS YP_179248.1 57237999 3231767 complement(1176112..1176957) 1 NC_003912.7 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 1176957 prmA 3231767 prmA Campylobacter jejuni RM1221 ribosomal protein L11 methyltransferase YP_179248.1 1176112 R 195099 CDS YP_179249.1 57238000 3231768 complement(1176980..1177372) 1 NC_003912.7 identified by similarity to SP:P06143; match to protein family HMM PF00072; chemotaxis protein CheY 1177372 cheY 3231768 cheY Campylobacter jejuni RM1221 chemotaxis protein CheY YP_179249.1 1176980 R 195099 CDS YP_179250.1 57238001 3231769 complement(1177485..1178378) 1 NC_003912.7 identified by similarity to GP:5771416; general glycosylation pathway protein 1178378 pglG 3231769 pglG Campylobacter jejuni RM1221 general glycosylation pathway protein YP_179250.1 1177485 R 195099 CDS YP_179251.1 57238002 3231770 complement(1178378..1180150) 1 NC_003912.7 identified by similarity to GP:5771415; match to protein family HMM PF02719; general glycosylation pathway protein 1180150 pglF 3231770 pglF Campylobacter jejuni RM1221 general glycosylation pathway protein YP_179251.1 1178378 R 195099 CDS YP_179252.1 57238003 3231771 complement(1180152..1181312) 1 NC_003912.7 identified by similarity to GP:5771414; match to protein family HMM PF01041; general glycosylation pathway protein 1181312 pglE 3231771 pglE Campylobacter jejuni RM1221 general glycosylation pathway protein YP_179252.1 1180152 R 195099 CDS YP_179253.1 57238004 3231772 complement(1181410..1182021) 1 NC_003912.7 identified by similarity to GP:5771413; general glycosylation pathway protein 1182021 pglD 3231772 pglD Campylobacter jejuni RM1221 general glycosylation pathway protein YP_179253.1 1181410 R 195099 CDS YP_179254.1 57238005 3231773 complement(1181987..1182589) 1 NC_003912.7 identified by similarity to GP:5771412; match to protein family HMM PF02397; general glycosylation pathway protein 1182589 pglC 3231773 pglC Campylobacter jejuni RM1221 general glycosylation pathway protein YP_179254.1 1181987 R 195099 CDS YP_179255.1 57238006 3231774 complement(1182582..1183712) 1 NC_003912.7 identified by similarity to GB:AAD51384.1; match to protein family HMM PF00534; general glycosylation pathway protein 1183712 pglA 3231774 pglA Campylobacter jejuni RM1221 general glycosylation pathway protein YP_179255.1 1182582 R 195099 CDS YP_179256.1 57238007 3231775 complement(1183722..1185863) 1 NC_003912.7 identified by similarity to GP:5771410; match to protein family HMM PF02516; general glycosylation pathway protein 1185863 pglB 3231775 pglB Campylobacter jejuni RM1221 general glycosylation pathway protein YP_179256.1 1183722 R 195099 CDS YP_179257.1 57238008 3231776 complement(1185867..1186964) 1 NC_003912.7 identified by similarity to GP:3413449; match to protein family HMM PF00534; general glycosylation pathway protein 1186964 pglJ 3231776 pglJ Campylobacter jejuni RM1221 general glycosylation pathway protein YP_179257.1 1185867 R 195099 CDS YP_179258.1 57238009 3231777 complement(1186952..1187881) 1 NC_003912.7 identified by similarity to GP:3413448; match to protein family HMM PF00535; general glycosylation pathway protein 1187881 pglI 3231777 pglI Campylobacter jejuni RM1221 general glycosylation pathway protein YP_179258.1 1186952 R 195099 CDS YP_179259.1 57238010 3231778 complement(1187874..1188950) 1 NC_003912.7 identified by similarity to GP:3413447; match to protein family HMM PF00534; general glycosylation pathway protein 1188950 pglH 3231778 pglH Campylobacter jejuni RM1221 general glycosylation pathway protein YP_179259.1 1187874 R 195099 CDS YP_179260.1 57238011 3231779 complement(1188950..1190644) 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01074; match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding/permease 1190644 wlaB 3231779 wlaB Campylobacter jejuni RM1221 ABC transporter ATP-binding/permease YP_179260.1 1188950 R 195099 CDS YP_179261.1 57238012 3231780 complement(1190638..1191624) 1 NC_003912.7 identified by similarity to SP:Q59083; match to protein family HMM PF01370; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 1191624 galE 3231780 galE Campylobacter jejuni RM1221 UDP-glucose 4-epimerase YP_179261.1 1190638 R 195099 CDS YP_179262.1 57238013 3231781 complement(1191683..1192477) 1 NC_003912.7 identified by similarity to GP:9714080; polysaccharide biosynthesis protein 1192477 wlaX 3231781 wlaX Campylobacter jejuni RM1221 polysaccharide biosynthesis protein YP_179262.1 1191683 R 195099 CDS YP_179263.1 57238014 3231782 1192544..1193572 1 NC_003912.7 identified by similarity to SP:P24173; match to protein family HMM PF01075; lipopolysaccharide heptosyltransferase I 1193572 waaC 3231782 waaC Campylobacter jejuni RM1221 lipopolysaccharide heptosyltransferase I YP_179263.1 1192544 D 195099 CDS YP_179264.1 57238015 3231783 1193562..1194449 1 NC_003912.7 acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; essential for survival; plays a role in cell responses to environmental changes; lipid A biosynthesis lauroyl acyltransferase 1194449 waaM 3231783 waaM Campylobacter jejuni RM1221 lipid A biosynthesis lauroyl acyltransferase YP_179264.1 1193562 D 195099 CDS YP_179265.1 57238016 3231784 1194446..1195996 1 NC_003912.7 identified by similarity to GP:15430479; match to protein family HMM PF00535; lipooligosaccharide biosynthesis glycosyltransferase 1195996 3231784 CJE1277 Campylobacter jejuni RM1221 lipooligosaccharide biosynthesis glycosyltransferase YP_179265.1 1194446 D 195099 CDS YP_179266.1 57238017 3231785 complement(1195965..1196852) 1 NC_003912.7 identified by similarity to GP:22086357; match to protein family HMM PF00535; lipooligosaccharide biosynthesis galactosyltransferase 1196852 3231785 CJE1278 Campylobacter jejuni RM1221 lipooligosaccharide biosynthesis galactosyltransferase YP_179266.1 1195965 R 195099 CDS YP_179267.1 57238018 3231786 complement(1196845..1198053) 1 NC_003912.7 identified by similarity to GP:22086358; match to protein family HMM PF00535; lipooligosaccharide biosynthesis glycosyltransferase 1198053 3231786 CJE1279 Campylobacter jejuni RM1221 lipooligosaccharide biosynthesis glycosyltransferase YP_179267.1 1196845 R 195099 CDS YP_179268.1 57238019 3231787 complement(1198131..1199102) 1 NC_003912.7 identified by similarity to GB:AAM90646.1; match to protein family HMM PF00535; lipooligosaccharide biosynthesis galactosyltransferase 1199102 3231787 CJE1280 Campylobacter jejuni RM1221 lipooligosaccharide biosynthesis galactosyltransferase YP_179268.1 1198131 R 195099 CDS YP_179269.1 57238020 3231788 complement(1199095..1199982) 1 NC_003912.7 hypothetical protein 1199982 3231788 CJE1281 Campylobacter jejuni RM1221 hypothetical protein YP_179269.1 1199095 R 195099 CDS YP_179270.1 57238021 3231789 complement(1200036..1200845) 1 NC_003912.7 identified by similarity to GP:22086361; match to protein family HMM PF00535; lipooligosaccharide biosynthesis glycosyltransferase 1200845 waaV 3231789 waaV Campylobacter jejuni RM1221 lipooligosaccharide biosynthesis glycosyltransferase YP_179270.1 1200036 R 195099 CDS YP_179271.1 57238022 3231790 1200904..1201854 1 NC_003912.7 identified by similarity to OMNI:NTL01HP01108; match to protein family HMM PF01075; ADP-heptose--LPS heptosyltransferase II 1201854 waaF 3231790 waaF Campylobacter jejuni RM1221 ADP-heptose--LPS heptosyltransferase II YP_179271.1 1200904 D 195099 CDS YP_179272.1 57238023 3231791 complement(1201840..1202604) 1 NC_003912.7 identified by similarity to GP:12802847; match to protein family HMM PF01755; lipooligosaccharide biosynthesis glycosyltransferase 1202604 3231791 CJE1284 Campylobacter jejuni RM1221 lipooligosaccharide biosynthesis glycosyltransferase YP_179272.1 1201840 R 195099 CDS YP_179273.1 57238024 3231792 complement(1202604..1203164) 1 NC_003912.7 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 1203164 gmhA-1 3231792 gmhA-1 Campylobacter jejuni RM1221 phosphoheptose isomerase YP_179273.1 1202604 R 195099 CDS YP_179274.1 57238025 3231793 complement(1203161..1204546) 1 NC_003912.7 identified by similarity to SP:P76658; match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase 1204546 hldE 3231793 hldE Campylobacter jejuni RM1221 D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase YP_179274.1 1203161 R 195099 CDS YP_179275.1 57238026 3231794 complement(1204539..1205492) 1 NC_003912.7 identified by similarity to SP:P17963; match to protein family HMM PF01370; ADP-L-glycero-D-mannoheptose-6-epimerase 1205492 waaD 3231794 waaD Campylobacter jejuni RM1221 ADP-L-glycero-D-mannoheptose-6-epimerase YP_179275.1 1204539 R 195099 CDS YP_179276.1 57238027 3231795 complement(1205493..1206020) 1 NC_003912.7 identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; hydrolase 1206020 3231795 CJE1288 Campylobacter jejuni RM1221 hydrolase YP_179276.1 1205493 R 195099 CDS YP_179277.1 57238028 3231796 1206135..1206437 1 NC_003912.7 identified by similarity to SP:P04032; match to protein family HMM PF00034; cytochrome C553 1206437 cyf 3231796 cyf Campylobacter jejuni RM1221 cytochrome C553 YP_179277.1 1206135 D 195099 CDS YP_179278.1 57238029 3231797 complement(1206460..1206666) 1 NC_003912.7 identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847; cytochrome oxidase maturation protein, cbb3-type 1206666 3231797 CJE1290 Campylobacter jejuni RM1221 cytochrome oxidase maturation protein, cbb3-type YP_179278.1 1206460 R 195099 CDS YP_179279.1 57238030 3231798 complement(1206663..1209014) 1 NC_003912.7 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; ATPase P 1209014 3231798 CJE1291 Campylobacter jejuni RM1221 ATPase P YP_179279.1 1206663 R 195099 CDS YP_179280.1 57238031 3231799 1209129..1210427 1 NC_003912.7 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1210427 rho 3231799 rho Campylobacter jejuni RM1221 transcription termination factor Rho YP_179280.1 1209129 D 195099 CDS YP_179281.1 57238032 3231800 1210431..1211960 1 NC_003912.7 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma/tau 1211960 dnaX 3231800 dnaX Campylobacter jejuni RM1221 DNA polymerase III subunits gamma/tau YP_179281.1 1210431 D 195099 CDS YP_179282.1 57238033 3231802 complement(1212547..1214646) 1 NC_003912.7 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 1214646 3231802 CJE1295 Campylobacter jejuni RM1221 copper-translocating P-type ATPase YP_179282.1 1212547 R 195099 CDS YP_179283.1 57238034 3231803 complement(1214646..1214840) 1 NC_003912.7 hypothetical protein 1214840 3231803 CJE1296 Campylobacter jejuni RM1221 hypothetical protein YP_179283.1 1214646 R 195099 CDS YP_179284.1 57238035 3231804 complement(1214830..1215780) 1 NC_003912.7 identified by similarity to OMNI:NTL02SA2153; match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1215780 3231804 CJE1297 Campylobacter jejuni RM1221 cation efflux family protein YP_179284.1 1214830 R 195099 CDS YP_179285.1 57238036 3231805 complement(1215856..1216119) 1 NC_003912.7 identified by similarity to OMNI:NTL04PA0392; hypothetical protein 1216119 3231805 CJE1298 Campylobacter jejuni RM1221 hypothetical protein YP_179285.1 1215856 R 195099 CDS YP_179286.1 57238037 3231806 complement(1216189..1216683) 1 NC_003912.7 identified by similarity to GP:29338279; hypothetical protein 1216683 3231806 CJE1299 Campylobacter jejuni RM1221 hypothetical protein YP_179286.1 1216189 R 195099 CDS YP_179287.1 57238038 3231807 complement(1216680..1217456) 1 NC_003912.7 identified by similarity to GP:29338280; hypothetical protein 1217456 3231807 CJE1300 Campylobacter jejuni RM1221 hypothetical protein YP_179287.1 1216680 R 195099 CDS YP_179288.1 57238039 3231808 1217523..1218449 1 NC_003912.7 identified by similarity to SP:Q60009; match to protein family HMM PF00056; match to protein family HMM PF02866; L-lactate dehydrogenase 1218449 ldh 3231808 ldh Campylobacter jejuni RM1221 L-lactate dehydrogenase YP_179288.1 1217523 D 195099 CDS YP_179289.1 57238040 3231809 complement(1218412..1219050) 1 NC_003912.7 identified by match to protein family HMM PF00597; DedA family protein 1219050 3231809 CJE1302 Campylobacter jejuni RM1221 DedA family protein YP_179289.1 1218412 R 195099 CDS YP_179290.1 57238041 3231810 complement(1219131..1219358) 1 NC_003912.7 identified by similarity to GP:29341730; hypothetical protein 1219358 3231810 CJE1303 Campylobacter jejuni RM1221 hypothetical protein YP_179290.1 1219131 R 195099 CDS YP_179291.1 57238042 3231811 complement(1219369..1220799) 1 NC_003912.7 identified by similarity to OMNI:SO4143; hypothetical protein 1220799 3231811 CJE1304 Campylobacter jejuni RM1221 hypothetical protein YP_179291.1 1219369 R 195099 CDS YP_179292.1 57238043 3231812 complement(1220963..1221445) 1 NC_003912.7 identified by similarity to SP:P35137; match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 1221445 ppiB 3231812 ppiB Campylobacter jejuni RM1221 peptidyl-prolyl cis-trans isomerase B YP_179292.1 1220963 R 195099 CDS YP_179293.1 57238044 3231813 complement(1221455..1222162) 1 NC_003912.7 identified by similarity to SP:Q9ZMR9; match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 1222162 3231813 CJE1306 Campylobacter jejuni RM1221 hypothetical protein YP_179293.1 1221455 R 195099 CDS YP_179294.1 57238045 3231814 1222267..1222608 1 NC_003912.7 identified by match to protein family HMM PF00893; SMR family multidrug efflux pump 1222608 3231814 CJE1307 Campylobacter jejuni RM1221 SMR family multidrug efflux pump YP_179294.1 1222267 D 195099 CDS YP_179295.1 57238046 3231815 1222608..1222916 1 NC_003912.7 identified by similarity to SP:O31791; match to protein family HMM PF00893; SMR family multidrug efflux pump 1222916 3231815 CJE1308 Campylobacter jejuni RM1221 SMR family multidrug efflux pump YP_179295.1 1222608 D 195099 CDS YP_179296.1 57238047 3231816 complement(1222934..1224526) 1 NC_003912.7 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1224526 argS 3231816 argS Campylobacter jejuni RM1221 arginyl-tRNA synthetase YP_179296.1 1222934 R 195099 CDS YP_179297.1 57238048 3231817 complement(1224538..1224777) 1 NC_003912.7 identified by similarity to SP:P25895; match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin arginine-targeting protein translocase 1224777 3231817 CJE1310 Campylobacter jejuni RM1221 twin arginine-targeting protein translocase YP_179297.1 1224538 R 195099 CDS YP_179298.1 57238049 3231818 complement(1224779..1225396) 1 NC_003912.7 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1225396 gmk 3231818 gmk Campylobacter jejuni RM1221 guanylate kinase YP_179298.1 1224779 R 195099 CDS YP_179299.1 57238050 3231819 complement(1225399..1227042) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00303; hypothetical protein 1227042 3231819 CJE1312 Campylobacter jejuni RM1221 hypothetical protein YP_179299.1 1225399 R 195099 CDS YP_179300.1 57238051 3231820 complement(1227099..1227866) 1 NC_003912.7 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1227866 fliR 3231820 fliR Campylobacter jejuni RM1221 flagellar biosynthesis protein FliR YP_179300.1 1227099 R 195099 CDS YP_179301.1 57238052 3231821 complement(1227853..1228488) 1 NC_003912.7 identified by similarity to OMNI:HP0179; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1228488 3231821 CJE1314 Campylobacter jejuni RM1221 ABC transporter ATP-binding protein YP_179301.1 1227853 R 195099 CDS YP_179302.1 57238053 3231822 complement(1228501..1229574) 1 NC_003912.7 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1229574 tsf 3231822 tsf Campylobacter jejuni RM1221 elongation factor Ts YP_179302.1 1228501 R 195099 CDS YP_179303.1 57238054 3231823 complement(1229574..1230365) 1 NC_003912.7 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1230365 rpsB 3231823 rpsB Campylobacter jejuni RM1221 30S ribosomal protein S2 YP_179303.1 1229574 R 195099 CDS YP_179304.1 57238055 3231824 complement(1230481..1231644) 1 NC_003912.7 identified by match to protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase 1231644 3231824 CJE1317 Campylobacter jejuni RM1221 cyclopropane-fatty-acyl-phospholipid synthase YP_179304.1 1230481 R 195099 CDS YP_179305.1 57238056 3231825 complement(1231772..1232896) 1 NC_003912.7 identified by match to protein family HMM PF00034; ubiquinol--cytochrome C reductase, cytochrome C1 subunit 1232896 petC 3231825 petC Campylobacter jejuni RM1221 ubiquinol--cytochrome C reductase, cytochrome C1 subunit YP_179305.1 1231772 R 195099 CDS YP_179306.1 57238057 3231826 complement(1232893..1234143) 1 NC_003912.7 identified by similarity to SP:P23134; match to protein family HMM PF00032; match to protein family HMM PF00033; ubiquinol--cytochrome C reductase, cytochrome b subunit 1234143 petB 3231826 petB Campylobacter jejuni RM1221 ubiquinol--cytochrome C reductase, cytochrome b subunit YP_179306.1 1232893 R 195099 CDS YP_179307.1 57238058 3231827 complement(1234145..1234648) 1 NC_003912.7 identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416; ubiquinol--cytochrome C reductase, iron-sulfur subunit 1234648 petA 3231827 petA Campylobacter jejuni RM1221 ubiquinol--cytochrome C reductase, iron-sulfur subunit YP_179307.1 1234145 R 195099 CDS YP_179308.1 57238059 3231828 complement(1234739..1236025) 1 NC_003912.7 identified by similarity to SP:P37310; match to protein family HMM PF02040; arsenical pump membrane protein 1236025 arsB 3231828 arsB Campylobacter jejuni RM1221 arsenical pump membrane protein YP_179308.1 1234739 R 195099 CDS YP_179309.1 57238060 3231829 complement(1236026..1237885) 1 NC_003912.7 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 1237885 gidA 3231829 gidA Campylobacter jejuni RM1221 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_179309.1 1236026 R 195099 CDS YP_179310.1 57238061 3231830 complement(1237973..1238470) 1 NC_003912.7 identified by similarity to SP:P50466; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 1238470 3231830 CJE1323 Campylobacter jejuni RM1221 methyl-accepting chemotaxis protein YP_179310.1 1237973 R 195099 CDS YP_179311.1 57238062 3231831 complement(1238488..1239867) 1 NC_003912.7 identified by similarity to PIR:C64532; match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1239867 3231831 CJE1324 Campylobacter jejuni RM1221 methyl-accepting chemotaxis protein YP_179311.1 1238488 R 195099 CDS YP_179312.1 57238063 3231832 complement(1239984..1240478) 1 NC_003912.7 identified by similarity to SP:P50466; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 1240478 3231832 CJE1325 Campylobacter jejuni RM1221 methyl-accepting chemotaxis protein YP_179312.1 1239984 R 195099 CDS YP_179313.1 57238064 3231833 1240825..1242123 1 NC_003912.7 identified by similarity to SP:P37312; match to protein family HMM PF00375; C4-dicarboxylate transport protein 1242123 dctA 3231833 dctA Campylobacter jejuni RM1221 C4-dicarboxylate transport protein YP_179313.1 1240825 D 195099 CDS YP_179314.1 57238065 3231834 complement(1242120..1242926) 1 NC_003912.7 hypothetical protein 1242926 3231834 CJE1327 Campylobacter jejuni RM1221 hypothetical protein YP_179314.1 1242120 R 195099 CDS YP_179315.1 57238066 3231835 1243068..1244594 1 NC_003912.7 identified by match to protein family HMM PF01384; phosphate transporter family protein 1244594 3231835 CJE1328 Campylobacter jejuni RM1221 phosphate transporter family protein YP_179315.1 1243068 D 195099 CDS YP_179316.1 57238067 3231836 complement(1244602..1245780) 1 NC_003912.7 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 1245780 3231836 CJE1329 Campylobacter jejuni RM1221 dihydroorotase YP_179316.1 1244602 R 195099 CDS YP_179317.1 57238068 3231837 complement(1245790..1246683) 1 NC_003912.7 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1246683 gpsA 3231837 gpsA Campylobacter jejuni RM1221 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_179317.1 1245790 R 195099 CDS YP_179318.1 57238069 3231838 complement(1246683..1248101) 1 NC_003912.7 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1248101 gatB 3231838 gatB Campylobacter jejuni RM1221 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_179318.1 1246683 R 195099 CDS YP_179319.1 57238070 3231839 1248216..1248710 1 NC_003912.7 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1248710 luxS 3231839 luxS Campylobacter jejuni RM1221 S-ribosylhomocysteinase YP_179319.1 1248216 D 195099 CDS YP_179320.1 57238071 3231840 1249021..1250013 1 NC_003912.7 identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase family oxidoreductase 1250013 3231840 CJE1333 Campylobacter jejuni RM1221 2OG-Fe(II) oxygenase family oxidoreductase YP_179320.1 1249021 D 195099 CDS YP_179321.1 57238072 3231841 1250006..1250794 1 NC_003912.7 identified by similarity to OMNI:PP5165; match to protein family HMM PF03180; NLPA family lipoprotein 1250794 3231841 CJE1334 Campylobacter jejuni RM1221 NLPA family lipoprotein YP_179321.1 1250006 D 195099 CDS YP_179322.1 57238073 3231842 1250806..1253070 1 NC_003912.7 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 1253070 metE 3231842 metE Campylobacter jejuni RM1221 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase YP_179322.1 1250806 D 195099 CDS YP_179323.1 57238074 3231843 1253080..1253928 1 NC_003912.7 identified by similarity to GB:AAF64321.1; match to protein family HMM PF02219; 5,10-methylenetetrahydrofolate reductase 1253928 metF 3231843 metF Campylobacter jejuni RM1221 5,10-methylenetetrahydrofolate reductase YP_179323.1 1253080 D 195099 CDS YP_179324.1 57238075 3231844 complement(1253950..1254141) 1 NC_003912.7 hypothetical protein 1254141 3231844 CJE1337 Campylobacter jejuni RM1221 hypothetical protein YP_179324.1 1253950 R 195099 CDS YP_179325.1 57238076 3231845 complement(1254138..1254818) 1 NC_003912.7 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 1254818 atpB 3231845 atpB Campylobacter jejuni RM1221 F0F1 ATP synthase subunit A YP_179325.1 1254138 R 195099 CDS YP_179326.1 57238077 3231846 complement(1254887..1256227) 1 NC_003912.7 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1256227 radA 3231846 radA Campylobacter jejuni RM1221 DNA repair protein RadA YP_179326.1 1254887 R 195099 CDS YP_179327.1 57238078 3231847 complement(1256227..1257093) 1 NC_003912.7 identified by similarity to SP:P10121; match to protein family HMM PF00448; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 1257093 ftsY 3231847 ftsY Campylobacter jejuni RM1221 signal recognition particle-docking protein FtsY YP_179327.1 1256227 R 195099 CDS YP_179328.1 57238079 3231848 complement(1257093..1257650) 1 NC_003912.7 identified by similarity to GP:14669467; lipoprotein 1257650 3231848 CJE1341 Campylobacter jejuni RM1221 lipoprotein YP_179328.1 1257093 R 195099 CDS YP_179329.1 57238080 3231849 1257733..1258359 1 NC_003912.7 identified by similarity to GB:AAP77185.1; hypothetical protein 1258359 3231849 CJE1342 Campylobacter jejuni RM1221 hypothetical protein YP_179329.1 1257733 D 195099 CDS YP_179330.1 57238081 3231850 1258280..1259833 1 NC_003912.7 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1259833 3231850 CJE1343 Campylobacter jejuni RM1221 phosphodiesterase YP_179330.1 1258280 D 195099 CDS YP_179331.1 57238082 3231851 1259842..1260399 1 NC_003912.7 identified by match to protein family HMM PF00597; DedA family protein 1260399 3231851 CJE1344 Campylobacter jejuni RM1221 DedA family protein YP_179331.1 1259842 D 195099 CDS YP_179332.1 57238722 3232510 1260399..1261658 1 NC_003912.7 identified by similarity to OMNI:NTL01HP01269; match to protein family HMM PF03772; match to protein family HMM TIGR00360; ComEC/Rec2 family protein 1261658 3232510 CJE1345 Campylobacter jejuni RM1221 ComEC/Rec2 family protein YP_179332.1 1260399 D 195099 CDS YP_179333.1 57238083 3231852 complement(1261602..1262408) 1 NC_003912.7 identified by similarity to SP:P32146; match to protein family HMM PF03631; match to protein family HMM TIGR00765; ribonuclease BN 1262408 rbn 3231852 rbn Campylobacter jejuni RM1221 ribonuclease BN YP_179333.1 1261602 R 195099 CDS YP_179334.1 57238084 3231853 complement(1262412..1263794) 1 NC_003912.7 identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase, subunit GlcD 1263794 glcD 3231853 glcD Campylobacter jejuni RM1221 glycolate oxidase, subunit GlcD YP_179334.1 1262412 R 195099 CDS YP_179335.1 57238085 3231854 complement(1263797..1264507) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00454; hypothetical protein 1264507 3231854 CJE1348 Campylobacter jejuni RM1221 hypothetical protein YP_179335.1 1263797 R 195099 CDS YP_179336.1 57238086 3231855 complement(1264515..1264616) 1 NC_003912.7 hypothetical protein 1264616 3231855 CJE1349 Campylobacter jejuni RM1221 hypothetical protein YP_179336.1 1264515 R 195099 CDS YP_179337.1 57238087 3231856 1264644..1265804 1 NC_003912.7 identified by match to protein family HMM PF01551; M24/M37 family peptidase 1265804 3231856 CJE1350 Campylobacter jejuni RM1221 M24/M37 family peptidase YP_179337.1 1264644 D 195099 CDS YP_179338.1 57238088 3231857 complement(1265801..1266004) 1 NC_003912.7 hypothetical protein 1266004 3231857 CJE1351 Campylobacter jejuni RM1221 hypothetical protein YP_179338.1 1265801 R 195099 CDS YP_179339.1 57238089 3231858 complement(1266006..1266686) 1 NC_003912.7 identified by similarity to SP:P94338; match to protein family HMM PF02578; hypothetical protein 1266686 3231858 CJE1352 Campylobacter jejuni RM1221 hypothetical protein YP_179339.1 1266006 R 195099 CDS YP_179340.1 57238090 3231859 complement(1266650..1267261) 1 NC_003912.7 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1267261 ribE 3231859 ribE Campylobacter jejuni RM1221 riboflavin synthase subunit alpha YP_179340.1 1266650 R 195099 CDS YP_179341.1 57238091 3231860 complement(1267270..1269810) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP01014; hypothetical protein 1269810 3231860 CJE1354 Campylobacter jejuni RM1221 hypothetical protein YP_179341.1 1267270 R 195099 CDS YP_179342.1 57238092 3231861 1269972..1270232 1 NC_003912.7 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; molecular chaperone GroES 1270232 groES 3231861 groES Campylobacter jejuni RM1221 molecular chaperone GroES YP_179342.1 1269972 D 195099 CDS YP_179343.1 57238093 3231862 1270253..1271890 1 NC_003912.7 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 1271890 groEL 3231862 groEL Campylobacter jejuni RM1221 molecular chaperone GroEL YP_179343.1 1270253 D 195099 CDS YP_179344.1 57238094 3231863 complement(1271933..1273123) 1 NC_003912.7 identified by similarity to GP:4104349; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1273123 3231863 CJE1357 Campylobacter jejuni RM1221 sensor histidine kinase YP_179344.1 1271933 R 195099 CDS YP_179345.1 57238095 3231864 complement(1273116..1273781) 1 NC_003912.7 identified by similarity to GP:13177580; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1273781 3231864 CJE1358 Campylobacter jejuni RM1221 DNA-binding response regulator YP_179345.1 1273116 R 195099 CDS YP_179346.1 57238096 3231865 1273929..1274528 1 NC_003912.7 identified by match to protein family HMM PF01814; hemerythrin family non-heme iron protein 1274528 3231865 CJE1359 Campylobacter jejuni RM1221 hemerythrin family non-heme iron protein YP_179346.1 1273929 D 195099 CDS YP_179347.1 57238097 3231866 1274539..1274787 1 NC_003912.7 identified by similarity to OMNI:NTL01XF01697; hypothetical protein 1274787 3231866 CJE1360 Campylobacter jejuni RM1221 hypothetical protein YP_179347.1 1274539 D 195099 CDS YP_179348.1 57238098 3231867 complement(1275045..1276292) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00150; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1276292 3231867 CJE1361 Campylobacter jejuni RM1221 sensor histidine kinase YP_179348.1 1275045 R 195099 CDS YP_179349.1 57238099 3231868 complement(1276289..1276963) 1 NC_003912.7 identified by similarity to OMNI:SA0019; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1276963 3231868 CJE1362 Campylobacter jejuni RM1221 DNA-binding response regulator YP_179349.1 1276289 R 195099 CDS YP_179350.1 57238100 3231869 complement(1277039..1278457) 1 NC_003912.7 identified by similarity to SP:P09376; match to protein family HMM PF00089; match to protein family HMM PF00595; protease DO 1278457 htrA 3231869 htrA Campylobacter jejuni RM1221 protease DO YP_179350.1 1277039 R 195099 CDS YP_179351.1 57238101 3231870 1278658..1279551 1 NC_003912.7 identified by similarity to SP:P17631; match to protein family HMM PF00226; match to protein family HMM PF01556; co-molecular chaperone DnaJ 1279551 dnaJ-1 3231870 dnaJ-1 Campylobacter jejuni RM1221 co-molecular chaperone DnaJ YP_179351.1 1278658 D 195099 CDS YP_179352.1 57238102 3231871 1279567..1279941 1 NC_003912.7 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 1279941 3231871 CJE1365 Campylobacter jejuni RM1221 MerR family transcriptional regulator YP_179352.1 1279567 D 195099 CDS YP_179353.1 57238103 3231872 1279948..1281573 1 NC_003912.7 identified by match to protein family HMM PF00999; match to protein family HMM PF02254; sodium/hydrogen exchanger family protein 1281573 3231872 CJE1366 Campylobacter jejuni RM1221 sodium/hydrogen exchanger family protein YP_179353.1 1279948 D 195099 CDS YP_179354.1 57238104 3231873 1281583..1281915 1 NC_003912.7 hypothetical protein 1281915 3231873 CJE1367 Campylobacter jejuni RM1221 hypothetical protein YP_179354.1 1281583 D 195099 CDS YP_179355.1 57238105 3231874 1281912..1282532 1 NC_003912.7 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD-superfamily hydrolase, subfamily IA, variant 1 family protein 1282532 3231874 CJE1368 Campylobacter jejuni RM1221 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein YP_179355.1 1281912 D 195099 CDS YP_179356.1 57238106 3231875 1282588..1284582 1 NC_003912.7 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1284582 glyS 3231875 glyS Campylobacter jejuni RM1221 glycyl-tRNA synthetase subunit beta YP_179356.1 1282588 D 195099 CDS YP_179357.1 57238107 3231876 1284579..1285400 1 NC_003912.7 identified by match to protein family HMM PF01551; M24/M37 family peptidase 1285400 3231876 CJE1370 Campylobacter jejuni RM1221 M24/M37 family peptidase YP_179357.1 1284579 D 195099 CDS YP_179358.1 57238108 3231877 1285397..1286347 1 NC_003912.7 identified by similarity to OMNI:HP0812; match to protein family HMM PF02636; hypothetical protein 1286347 3231877 CJE1371 Campylobacter jejuni RM1221 hypothetical protein YP_179358.1 1285397 D 195099 CDS YP_179359.1 57238109 3231878 complement(1286344..1287318) 1 NC_003912.7 identified by match to protein family HMM PF02541; Ppx/GppA family phosphatase 1287318 3231878 CJE1372 Campylobacter jejuni RM1221 Ppx/GppA family phosphatase YP_179359.1 1286344 R 195099 CDS YP_179360.1 57238110 3231879 1287374..1288147 1 NC_003912.7 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1288147 pdxJ 3231879 pdxJ Campylobacter jejuni RM1221 pyridoxine 5'-phosphate synthase YP_179360.1 1287374 D 195099 CDS YP_179361.1 57238111 3231880 1288144..1289238 1 NC_003912.7 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 1289238 pdxA 3231880 pdxA Campylobacter jejuni RM1221 4-hydroxythreonine-4-phosphate dehydrogenase YP_179361.1 1288144 D 195099 CDS YP_179362.1 57238112 3231881 complement(1289228..1289539) 1 NC_003912.7 hypothetical protein 1289539 3231881 CJE1375 Campylobacter jejuni RM1221 hypothetical protein YP_179362.1 1289228 R 195099 CDS YP_179363.1 57238113 3231882 complement(1289512..1289829) 1 NC_003912.7 hypothetical protein 1289829 3231882 CJE1376 Campylobacter jejuni RM1221 hypothetical protein YP_179363.1 1289512 R 195099 CDS YP_179364.1 57238114 3231883 1289942..1291141 1 NC_003912.7 identified by similarity to SP:P77389; transporter 1291141 3231883 CJE1377 Campylobacter jejuni RM1221 transporter YP_179364.1 1289942 D 195099 CDS YP_179365.1 57238115 3231884 1291197..1291517 1 NC_003912.7 hypothetical protein 1291517 3231884 CJE1378 Campylobacter jejuni RM1221 hypothetical protein YP_179365.1 1291197 D 195099 CDS YP_179366.1 57238116 3231885 1291701..1292723 1 NC_003912.7 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1292723 hemE 3231885 hemE Campylobacter jejuni RM1221 uroporphyrinogen decarboxylase YP_179366.1 1291701 D 195099 CDS YP_179367.1 57238117 3231886 1292720..1293622 1 NC_003912.7 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1293622 3231886 CJE1380 Campylobacter jejuni RM1221 radical SAM domain-containing protein YP_179367.1 1292720 D 195099 CDS YP_179368.1 57238118 3231887 complement(1293619..1294815) 1 NC_003912.7 hypothetical protein 1294815 3231887 CJE1381 Campylobacter jejuni RM1221 hypothetical protein YP_179368.1 1293619 R 195099 CDS YP_179369.1 57238119 3231888 complement(1294817..1296619) 1 NC_003912.7 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1296619 uvrC 3231888 uvrC Campylobacter jejuni RM1221 excinuclease ABC subunit C YP_179369.1 1294817 R 195099 CDS YP_179370.1 57238120 3231889 complement(1296612..1297106) 1 NC_003912.7 hypothetical protein 1297106 3231889 CJE1383 Campylobacter jejuni RM1221 hypothetical protein YP_179370.1 1296612 R 195099 CDS YP_179371.1 57238121 3231890 1297110..1297241 1 NC_003912.7 hypothetical protein 1297241 3231890 CJE1384 Campylobacter jejuni RM1221 hypothetical protein YP_179371.1 1297110 D 195099 CDS YP_179372.1 57238122 3231891 1297245..1298780 1 NC_003912.7 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1298780 guaA 3231891 guaA Campylobacter jejuni RM1221 GMP synthase YP_179372.1 1297245 D 195099 CDS YP_179373.1 57238123 3231892 1298866..1300326 1 NC_003912.7 hypothetical protein 1300326 3231892 CJE1386 Campylobacter jejuni RM1221 hypothetical protein YP_179373.1 1298866 D 195099 CDS YP_179374.1 57238124 3231893 1300566..1301816 1 NC_003912.7 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1301816 purD 3231893 purD Campylobacter jejuni RM1221 phosphoribosylamine--glycine ligase YP_179374.1 1300566 D 195099 CDS YP_179375.1 57238125 3231894 1301813..1302265 1 NC_003912.7 identified by similarity to OMNI:VC0842; hypothetical protein 1302265 3231894 CJE1388 Campylobacter jejuni RM1221 hypothetical protein YP_179375.1 1301813 D 195099 CDS YP_179376.1 57238126 3231895 1302255..1304303 1 NC_003912.7 identified by similarity to SP:Q9KUR9; match to protein family HMM PF04453; organic solvent tolerance protein 1304303 3231895 CJE1389 Campylobacter jejuni RM1221 organic solvent tolerance protein YP_179376.1 1302255 D 195099 CDS YP_179377.1 57238127 3231896 1304373..1306532 1 NC_003912.7 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR01369; polynucleotide phosphorylase/polyadenylase 1306532 pnp 3231896 pnp Campylobacter jejuni RM1221 polynucleotide phosphorylase/polyadenylase YP_179377.1 1304373 D 195099 CDS YP_179378.1 57238128 3231897 1306529..1307011 1 NC_003912.7 identified by similarity to OMNI:NTL01OI1065; hypothetical protein 1307011 3231897 CJE1391 Campylobacter jejuni RM1221 hypothetical protein YP_179378.1 1306529 D 195099 CDS YP_179379.1 57238129 3231898 complement(1307062..1307724) 1 NC_003912.7 hypothetical protein 1307724 3231898 CJE1392 Campylobacter jejuni RM1221 hypothetical protein YP_179379.1 1307062 R 195099 CDS YP_179380.1 57238130 3231900 1308976..1309431 1 NC_003912.7 identified by match to protein family HMM PF01451; low molecular weight phosphotyrosine protein phosphatase 1309431 3231900 CJE1394 Campylobacter jejuni RM1221 low molecular weight phosphotyrosine protein phosphatase YP_179380.1 1308976 D 195099 CDS YP_179381.1 57238131 3231901 1309683..1310978 1 NC_003912.7 identified by similarity to SP:P80672; match to protein family HMM PF05538; major outer membrane protein 1310978 porA 3231901 porA Campylobacter jejuni RM1221 major outer membrane protein YP_179381.1 1309683 D 195099 CDS YP_179382.1 57238132 3231902 complement(1311094..1312215) 1 NC_003912.7 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 1312215 dnaJ-2 3231902 dnaJ-2 Campylobacter jejuni RM1221 molecular chaperone DnaJ YP_179382.1 1311094 R 195099 CDS YP_179383.1 57238133 3231903 1312372..1313043 1 NC_003912.7 identified by similarity to SP:P30846; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1313043 racR 3231903 racR Campylobacter jejuni RM1221 DNA-binding response regulator YP_179383.1 1312372 D 195099 CDS YP_179384.1 57238134 3231904 1313040..1314275 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00150; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1314275 racS 3231904 racS Campylobacter jejuni RM1221 sensor histidine kinase YP_179384.1 1313040 D 195099 CDS YP_179385.1 57238135 3231905 1314275..1314847 1 NC_003912.7 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1314847 recR 3231905 recR Campylobacter jejuni RM1221 recombination protein RecR YP_179385.1 1314275 D 195099 CDS YP_179386.1 57238136 3231906 complement(1314844..1315380) 1 NC_003912.7 identified by similarity to SP:P37182; match to protein family HMM PF01750; match to protein family HMM TIGR00072; hydrogenase maturation protease HydD 1315380 hydD 3231906 hydD Campylobacter jejuni RM1221 hydrogenase maturation protease HydD YP_179386.1 1314844 R 195099 CDS YP_179387.1 57238137 3231907 complement(1315377..1316093) 1 NC_003912.7 identified by similarity to SP:P31875; match to protein family HMM PF01292; quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit 1316093 hydC 3231907 hydC Campylobacter jejuni RM1221 quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit YP_179387.1 1315377 R 195099 CDS YP_179388.1 57238138 3231908 complement(1316080..1317795) 1 NC_003912.7 identified by similarity to SP:P31883; match to protein family HMM PF00374; quinone-reactive Ni/Fe-hydrogenase, large subunit 1317795 hydB 3231908 hydB Campylobacter jejuni RM1221 quinone-reactive Ni/Fe-hydrogenase, large subunit YP_179388.1 1316080 R 195099 CDS YP_179389.1 57238139 3231909 complement(1317798..1318880) 1 NC_003912.7 identified by similarity to SP:P31884; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; quinone-reactive Ni/Fe-hydrogenase, small subunit 1318880 hydA 3231909 hydA Campylobacter jejuni RM1221 quinone-reactive Ni/Fe-hydrogenase, small subunit YP_179389.1 1317798 R 195099 CDS YP_179390.1 57238140 3231910 complement(1319058..1320899) 1 NC_003912.7 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 1320899 mnmC 3231910 mnmC Campylobacter jejuni RM1221 5-methylaminomethyl-2-thiouridine methyltransferase YP_179390.1 1319058 R 195099 CDS YP_179391.1 57238141 3231911 complement(1320896..1322875) 1 NC_003912.7 identified by similarity to SP:P36548; match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 1322875 3231911 CJE1405 Campylobacter jejuni RM1221 N-acetylmuramoyl-L-alanine amidase YP_179391.1 1320896 R 195099 CDS YP_179392.1 57238142 3231912 complement(1322875..1323966) 1 NC_003912.7 identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase family oxidoreductase 1323966 3231912 CJE1406 Campylobacter jejuni RM1221 2-nitropropane dioxygenase family oxidoreductase YP_179392.1 1322875 R 195099 CDS YP_179393.1 57238143 3231913 complement(1323963..1325168) 1 NC_003912.7 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1325168 tyrS 3231913 tyrS Campylobacter jejuni RM1221 tyrosyl-tRNA synthetase YP_179393.1 1323963 R 195099 CDS YP_179394.1 57238144 3231914 complement(1325180..1327375) 1 NC_003912.7 identified by similarity to SP:O54408; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; RelA/SpoT family protein 1327375 3231914 CJE1408 Campylobacter jejuni RM1221 RelA/SpoT family protein YP_179394.1 1325180 R 195099 CDS YP_179395.1 57238145 3231915 complement(1327359..1327583) 1 NC_003912.7 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1327583 rpoZ 3231915 rpoZ Campylobacter jejuni RM1221 DNA-directed RNA polymerase subunit omega YP_179395.1 1327359 R 195099 CDS YP_179396.1 57238146 3231916 complement(1327594..1328313) 1 NC_003912.7 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1328313 pyrH 3231916 pyrH Campylobacter jejuni RM1221 uridylate kinase YP_179396.1 1327594 R 195099 CDS YP_179397.1 57238147 3231917 complement(1328365..1329558) 1 NC_003912.7 identified by match to protein family HMM PF01551; M24/M37 family peptidase 1329558 3231917 CJE1411 Campylobacter jejuni RM1221 M24/M37 family peptidase YP_179397.1 1328365 R 195099 CDS YP_179398.1 57238148 3231918 complement(1329555..1330361) 1 NC_003912.7 identified by similarity to OMNI:NTL01CA2621; cell division protein FtsX 1330361 3231918 CJE1412 Campylobacter jejuni RM1221 cell division protein FtsX YP_179398.1 1329555 R 195099 CDS YP_179399.1 57238149 3231919 complement(1330348..1331013) 1 NC_003912.7 identified by similarity to SP:P75957; match to protein family HMM PF00005; lipoprotein releasing system ATP-binding protein LolD 1331013 lolD 3231919 lolD Campylobacter jejuni RM1221 lipoprotein releasing system ATP-binding protein LolD YP_179399.1 1330348 R 195099 CDS YP_179400.1 57238150 3231920 complement(1331083..1332261) 1 NC_003912.7 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1332261 trmB 3231920 trmB Campylobacter jejuni RM1221 tRNA (guanine-N(7)-)-methyltransferase YP_179400.1 1331083 R 195099 CDS YP_179401.1 57238151 3231921 complement(1332261..1333493) 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01222; match to protein family HMM PF00041; fibronectin type III domain-containing protein 1333493 3231921 CJE1415 Campylobacter jejuni RM1221 fibronectin type III domain-containing protein YP_179401.1 1332261 R 195099 CDS YP_179402.1 57238152 3231922 complement(1333441..1334409) 1 NC_003912.7 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 1334409 3231922 CJE1416 Campylobacter jejuni RM1221 ribosomal large subunit pseudouridine synthase D YP_179402.1 1333441 R 195099 CDS YP_179403.1 57238153 3231923 1334487..1335587 1 NC_003912.7 identified by similarity to PIR:C81336; match to protein family HMM PF01098; rod shape-determining protein RodA 1335587 3231923 CJE1417 Campylobacter jejuni RM1221 rod shape-determining protein RodA YP_179403.1 1334487 D 195099 CDS YP_179404.1 57238154 3231924 1335926..1337101 1 NC_003912.7 identified by similarity to GB:AAN54532.1; match to protein family HMM PF00589; phage integrase family site specific recombinase 1337101 3231924 CJE1418 Campylobacter jejuni RM1221 phage integrase family site specific recombinase YP_179404.1 1335926 D 195099 CDS YP_179405.1 57238155 3231925 complement(1337098..1337304) 1 NC_003912.7 DNA binding protein 1337304 3231925 CJE1419 Campylobacter jejuni RM1221 DNA binding protein YP_179405.1 1337098 R 195099 CDS YP_179406.1 57238156 3231926 complement(1337306..1337659) 1 NC_003912.7 hypothetical protein 1337659 3231926 CJE1420 Campylobacter jejuni RM1221 hypothetical protein YP_179406.1 1337306 R 195099 CDS YP_179407.1 57238157 3231927 complement(1337677..1338432) 1 NC_003912.7 identified by similarity to GB:CAA65779.1; match to protein family HMM PF01555; site-specific DNA-methyltransferase 1338432 3231927 CJE1421 Campylobacter jejuni RM1221 site-specific DNA-methyltransferase YP_179407.1 1337677 R 195099 CDS YP_179408.1 57238158 3231928 complement(1338410..1338676) 1 NC_003912.7 emm-like protein 1338676 3231928 CJE1422 Campylobacter jejuni RM1221 emm-like protein YP_179408.1 1338410 R 195099 CDS YP_179409.1 57238159 3231929 complement(1338660..1339031) 1 NC_003912.7 hypothetical protein 1339031 3231929 CJE1423 Campylobacter jejuni RM1221 hypothetical protein YP_179409.1 1338660 R 195099 CDS YP_179410.1 57238160 3231930 complement(1339032..1339256) 1 NC_003912.7 hypothetical protein 1339256 3231930 CJE1424 Campylobacter jejuni RM1221 hypothetical protein YP_179410.1 1339032 R 195099 CDS YP_179411.1 57238161 3231931 complement(1339265..1339759) 1 NC_003912.7 hypothetical protein 1339759 3231931 CJE1425 Campylobacter jejuni RM1221 hypothetical protein YP_179411.1 1339265 R 195099 CDS YP_179412.1 57238162 3231932 complement(1339963..1340277) 1 NC_003912.7 hypothetical protein 1340277 3231932 CJE1426 Campylobacter jejuni RM1221 hypothetical protein YP_179412.1 1339963 R 195099 CDS YP_179413.1 57238163 3231933 complement(1340356..1340676) 1 NC_003912.7 hypothetical protein 1340676 3231933 CJE1427 Campylobacter jejuni RM1221 hypothetical protein YP_179413.1 1340356 R 195099 CDS YP_179414.1 57238164 3231934 complement(1340669..1340773) 1 NC_003912.7 hypothetical protein 1340773 3231934 CJE1428 Campylobacter jejuni RM1221 hypothetical protein YP_179414.1 1340669 R 195099 CDS YP_179415.1 57238165 3231935 complement(1341064..1341300) 1 NC_003912.7 identified by similarity to GP:28203221; hypothetical protein 1341300 3231935 CJE1429 Campylobacter jejuni RM1221 hypothetical protein YP_179415.1 1341064 R 195099 CDS YP_179416.1 57238166 3231936 complement(1341314..1342081) 1 NC_003912.7 identified by similarity to GP:23452767; RloG protein 1342081 3231936 CJE1430 Campylobacter jejuni RM1221 RloG protein YP_179416.1 1341314 R 195099 CDS YP_179417.1 57238167 3231937 complement(1342098..1342247) 1 NC_003912.7 hypothetical protein 1342247 3231937 CJE1431 Campylobacter jejuni RM1221 hypothetical protein YP_179417.1 1342098 R 195099 CDS YP_179418.1 57238168 3231938 complement(1342219..1342347) 1 NC_003912.7 hypothetical protein 1342347 3231938 CJE1432 Campylobacter jejuni RM1221 hypothetical protein YP_179418.1 1342219 R 195099 CDS YP_179419.1 57238169 3231939 complement(1342415..1342678) 1 NC_003912.7 hypothetical protein 1342678 3231939 CJE1433 Campylobacter jejuni RM1221 hypothetical protein YP_179419.1 1342415 R 195099 CDS YP_179420.1 57238170 3231940 complement(1342735..1343022) 1 NC_003912.7 identified by similarity to GB:AAL82351.1; hypothetical protein 1343022 3231940 CJE1434 Campylobacter jejuni RM1221 hypothetical protein YP_179420.1 1342735 R 195099 CDS YP_179421.1 57238171 3231941 complement(1343075..1343806) 1 NC_003912.7 identified by similarity to GP:13517589; match to protein family HMM PF03374; DNA-binding protein Roi 1343806 3231941 CJE1435 Campylobacter jejuni RM1221 DNA-binding protein Roi YP_179421.1 1343075 R 195099 CDS YP_179422.1 57238172 3231942 complement(1344237..1344521) 1 NC_003912.7 hypothetical protein 1344521 3231942 CJE1436 Campylobacter jejuni RM1221 hypothetical protein YP_179422.1 1344237 R 195099 CDS YP_179423.1 57238174 3231944 1344501..1344734 1 NC_003912.7 hypothetical protein 1344734 3231944 CJE1437 Campylobacter jejuni RM1221 hypothetical protein YP_179423.1 1344501 D 195099 CDS YP_179424.1 57238173 3231943 complement(1344518..1344721) 1 NC_003912.7 hypothetical protein 1344721 3231943 CJE1438 Campylobacter jejuni RM1221 hypothetical protein YP_179424.1 1344518 R 195099 CDS YP_179425.1 57238175 3231945 1344926..1345579 1 NC_003912.7 hypothetical protein 1345579 3231945 CJE1439 Campylobacter jejuni RM1221 hypothetical protein YP_179425.1 1344926 D 195099 CDS YP_179426.1 57238176 3231946 1345814..1346476 1 NC_003912.7 identified by similarity to SP:P41027; match to protein family HMM PF00717; signal peptidase I 1346476 3231946 CJE1440 Campylobacter jejuni RM1221 signal peptidase I YP_179426.1 1345814 D 195099 CDS YP_179427.1 57238723 3232511 1346482..1347135 1 NC_003912.7 identified by similarity to GP:27359896; match to protein family HMM PF01223; DNA/RNA non-specific endonuclease 1347135 3232511 CJE1441 Campylobacter jejuni RM1221 DNA/RNA non-specific endonuclease YP_179427.1 1346482 D 195099 CDS YP_179428.1 57238724 3232512 1347152..1347433 1 NC_003912.7 identified by similarity to OMNI:NT01MC0181; hypothetical protein 1347433 3232512 CJE1442 Campylobacter jejuni RM1221 hypothetical protein YP_179428.1 1347152 D 195099 CDS YP_179429.1 57238725 3232513 complement(1347447..1347644) 1 NC_003912.7 hypothetical protein 1347644 3232513 CJE1443 Campylobacter jejuni RM1221 hypothetical protein YP_179429.1 1347447 R 195099 CDS YP_179430.1 57238726 3232514 complement(1347562..1347981) 1 NC_003912.7 hypothetical protein 1347981 3232514 CJE1444 Campylobacter jejuni RM1221 hypothetical protein YP_179430.1 1347562 R 195099 CDS YP_179431.1 57238305 3232079 complement(1348210..1348671) 1 NC_003912.7 hypothetical protein 1348671 3232079 CJE1445 Campylobacter jejuni RM1221 hypothetical protein YP_179431.1 1348210 R 195099 CDS YP_179432.1 57238727 3232515 complement(1348671..1348778) 1 NC_003912.7 hypothetical protein 1348778 3232515 CJE1446 Campylobacter jejuni RM1221 hypothetical protein YP_179432.1 1348671 R 195099 CDS YP_179433.1 57238306 3232080 complement(1348720..1350003) 1 NC_003912.7 hypothetical protein 1350003 3232080 CJE1447 Campylobacter jejuni RM1221 hypothetical protein YP_179433.1 1348720 R 195099 CDS YP_179434.1 57238307 3232081 complement(1350000..1350374) 1 NC_003912.7 identified by similarity to OMNI:NTL03ST1666; hypothetical protein 1350374 3232081 CJE1448 Campylobacter jejuni RM1221 hypothetical protein YP_179434.1 1350000 R 195099 CDS YP_179435.1 57238308 3232082 complement(1350367..1350750) 1 NC_003912.7 hypothetical protein 1350750 3232082 CJE1449 Campylobacter jejuni RM1221 hypothetical protein YP_179435.1 1350367 R 195099 CDS YP_179436.1 57238309 3232083 complement(1350747..1351382) 1 NC_003912.7 hypothetical protein 1351382 3232083 CJE1450 Campylobacter jejuni RM1221 hypothetical protein YP_179436.1 1350747 R 195099 CDS YP_179437.1 57238310 3232084 complement(1351395..1351745) 1 NC_003912.7 hypothetical protein 1351745 3232084 CJE1451 Campylobacter jejuni RM1221 hypothetical protein YP_179437.1 1351395 R 195099 CDS YP_179438.1 57238311 3232085 complement(1351846..1353411) 1 NC_003912.7 hypothetical protein 1353411 3232085 CJE1452 Campylobacter jejuni RM1221 hypothetical protein YP_179438.1 1351846 R 195099 CDS YP_179439.1 57238312 3232086 complement(1353404..1354036) 1 NC_003912.7 hypothetical protein 1354036 3232086 CJE1453 Campylobacter jejuni RM1221 hypothetical protein YP_179439.1 1353404 R 195099 CDS YP_179440.1 57238313 3232087 complement(1354033..1354350) 1 NC_003912.7 phage head-tail adaptor 1354350 3232087 CJE1454 Campylobacter jejuni RM1221 phage head-tail adaptor YP_179440.1 1354033 R 195099 CDS YP_179441.1 57238314 3232088 complement(1354363..1354677) 1 NC_003912.7 hypothetical protein 1354677 3232088 CJE1455 Campylobacter jejuni RM1221 hypothetical protein YP_179441.1 1354363 R 195099 CDS YP_179442.1 57238315 3232089 1354760..1355032 1 NC_003912.7 hypothetical protein 1355032 3232089 CJE1456 Campylobacter jejuni RM1221 hypothetical protein YP_179442.1 1354760 D 195099 CDS YP_179443.1 57238316 3232090 complement(1354797..1355048) 1 NC_003912.7 hypothetical protein 1355048 3232090 CJE1457 Campylobacter jejuni RM1221 hypothetical protein YP_179443.1 1354797 R 195099 CDS YP_179444.1 57238317 3232091 complement(1355059..1356225) 1 NC_003912.7 identified by match to protein family HMM TIGR01554; HK97 family major capsid protein 1356225 3232091 CJE1458 Campylobacter jejuni RM1221 HK97 family major capsid protein YP_179444.1 1355059 R 195099 CDS YP_179445.1 57238318 3232092 complement(1356242..1356799) 1 NC_003912.7 hypothetical protein 1356799 3232092 CJE1459 Campylobacter jejuni RM1221 hypothetical protein YP_179445.1 1356242 R 195099 CDS YP_179446.1 57238319 3232093 complement(1356885..1357754) 1 NC_003912.7 hypothetical protein 1357754 3232093 CJE1460 Campylobacter jejuni RM1221 hypothetical protein YP_179446.1 1356885 R 195099 CDS YP_179447.1 57238320 3232094 complement(1357767..1363466) 1 NC_003912.7 hypothetical protein 1363466 3232094 CJE1461 Campylobacter jejuni RM1221 hypothetical protein YP_179447.1 1357767 R 195099 CDS YP_179448.1 57238321 3232095 complement(1363478..1363609) 1 NC_003912.7 hypothetical protein 1363609 3232095 CJE1462 Campylobacter jejuni RM1221 hypothetical protein YP_179448.1 1363478 R 195099 CDS YP_179449.1 57238322 3232096 1363592..1363864 1 NC_003912.7 hypothetical protein 1363864 3232096 CJE1463 Campylobacter jejuni RM1221 hypothetical protein YP_179449.1 1363592 D 195099 CDS YP_179450.1 57238323 3232097 complement(1363856..1364071) 1 NC_003912.7 hypothetical protein 1364071 3232097 CJE1464 Campylobacter jejuni RM1221 hypothetical protein YP_179450.1 1363856 R 195099 CDS YP_179451.1 57238324 3232098 complement(1364152..1364508) 1 NC_003912.7 hypothetical protein 1364508 3232098 CJE1465 Campylobacter jejuni RM1221 hypothetical protein YP_179451.1 1364152 R 195099 CDS YP_179452.1 57238325 3232099 complement(1364505..1365485) 1 NC_003912.7 hypothetical protein 1365485 3232099 CJE1466 Campylobacter jejuni RM1221 hypothetical protein YP_179452.1 1364505 R 195099 CDS YP_179453.1 57238326 3232100 complement(1365657..1366007) 1 NC_003912.7 hypothetical protein 1366007 3232100 CJE1467 Campylobacter jejuni RM1221 hypothetical protein YP_179453.1 1365657 R 195099 CDS YP_179454.1 57238728 3232516 complement(1366008..1366550) 1 NC_003912.7 identified by match to protein family HMM TIGR01725; HK97 family phage protein 1366550 3232516 CJE1468 Campylobacter jejuni RM1221 HK97 family phage protein YP_179454.1 1366008 R 195099 CDS YP_179455.1 57238327 3232101 complement(1366547..1367719) 1 NC_003912.7 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; HK97 family portal protein 1367719 3232101 CJE1469 Campylobacter jejuni RM1221 HK97 family portal protein YP_179455.1 1366547 R 195099 CDS YP_179456.1 57238328 3232102 complement(1367879..1368313) 1 NC_003912.7 identified by similarity to OMNI:NTL02LI2843; toxin-antitoxin protein 1368313 3232102 CJE1470 Campylobacter jejuni RM1221 toxin-antitoxin protein YP_179456.1 1367879 R 195099 CDS YP_179457.1 57238329 3232103 complement(1368368..1369993) 1 NC_003912.7 identified by similarity to OMNI:NTL01SF1096; match to protein family HMM PF03354; phage terminase, large subunit 1369993 3232103 CJE1471 Campylobacter jejuni RM1221 phage terminase, large subunit YP_179457.1 1368368 R 195099 CDS YP_179458.1 57238330 3232104 complement(1369997..1370632) 1 NC_003912.7 phage terminase, small subunit 1370632 3232104 CJE1472 Campylobacter jejuni RM1221 phage terminase, small subunit YP_179458.1 1369997 R 195099 CDS YP_179459.1 57238331 3232105 complement(1370883..1371233) 1 NC_003912.7 identified by match to protein family HMM PF01844; HNH endonuclease 1371233 3232105 CJE1473 Campylobacter jejuni RM1221 HNH endonuclease YP_179459.1 1370883 R 195099 CDS YP_179460.1 57238332 3232106 complement(1371220..1371510) 1 NC_003912.7 hypothetical protein 1371510 3232106 CJE1474 Campylobacter jejuni RM1221 hypothetical protein YP_179460.1 1371220 R 195099 CDS YP_179461.1 57238333 3232107 1372261..1373604 1 NC_003912.7 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; TrkH family potassium uptake protein 1373604 3232107 CJE1475 Campylobacter jejuni RM1221 TrkH family potassium uptake protein YP_179461.1 1372261 D 195099 CDS YP_179462.1 57238334 3232108 1373615..1374265 1 NC_003912.7 identified by similarity to GP:3288678; match to protein family HMM PF02254; potassium uptake protein TrkA 1374265 3232108 CJE1476 Campylobacter jejuni RM1221 potassium uptake protein TrkA YP_179462.1 1373615 D 195099 CDS YP_179463.1 57238335 3232109 complement(1374262..1374933) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00708; match to protein family HMM PF02621; hypothetical protein 1374933 3232109 CJE1477 Campylobacter jejuni RM1221 hypothetical protein YP_179463.1 1374262 R 195099 CDS YP_179464.1 57238336 3232110 complement(1374939..1375565) 1 NC_003912.7 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1375565 upp 3232110 upp Campylobacter jejuni RM1221 uracil phosphoribosyltransferase YP_179464.1 1374939 R 195099 CDS YP_179465.1 57238337 3232111 complement(1375562..1376797) 1 NC_003912.7 identified by similarity to SP:P76558; match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme, truncation 1376797 3232111 CJE1479 Campylobacter jejuni RM1221 NADP-dependent malic enzyme, truncation YP_179465.1 1375562 R 195099 CDS YP_179466.1 57238338 3232112 complement(1376799..1378190) 1 NC_003912.7 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1378190 gltX 3232112 gltX Campylobacter jejuni RM1221 glutamyl-tRNA synthetase YP_179466.1 1376799 R 195099 CDS YP_179467.1 57238339 3232113 1378255..1379070 1 NC_003912.7 identified by similarity to GB:AAP77293.1; hypothetical protein 1379070 3232113 CJE1481 Campylobacter jejuni RM1221 hypothetical protein YP_179467.1 1378255 D 195099 CDS YP_179468.1 57238340 3232114 complement(1379107..1380438) 1 NC_003912.7 biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase 1380438 accC-2 3232114 accC-2 Campylobacter jejuni RM1221 biotin carboxylase YP_179468.1 1379107 R 195099 CDS YP_179469.1 57238341 3232115 complement(1380440..1380895) 1 NC_003912.7 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase 1380895 accB 3232115 accB Campylobacter jejuni RM1221 acetyl-CoA carboxylase YP_179469.1 1380440 R 195099 CDS YP_179470.1 57238342 3232116 1381043..1381603 1 NC_003912.7 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1381603 dcd 3232116 dcd Campylobacter jejuni RM1221 deoxycytidine triphosphate deaminase YP_179470.1 1381043 D 195099 CDS YP_179471.1 57238343 3232117 1381652..1382656 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01235; match to protein family HMM PF02719; polysaccharide biosynthesis protein 1382656 flmA 3232117 flmA Campylobacter jejuni RM1221 polysaccharide biosynthesis protein YP_179471.1 1381652 D 195099 CDS YP_179472.1 57238344 3232118 1382658..1383788 1 NC_003912.7 identified by match to protein family HMM PF01041; aminotransferase 1383788 3232118 CJE1486 Campylobacter jejuni RM1221 aminotransferase YP_179472.1 1382658 D 195099 CDS YP_179473.1 57238345 3232119 1383781..1385097 1 NC_003912.7 identified by similarity to PIR:E97170; hypothetical protein 1385097 3232119 CJE1487 Campylobacter jejuni RM1221 hypothetical protein YP_179473.1 1383781 D 195099 CDS YP_179474.1 57238346 3232120 1385094..1385879 1 NC_003912.7 hypothetical protein 1385879 3232120 CJE1488 Campylobacter jejuni RM1221 hypothetical protein YP_179474.1 1385094 D 195099 CDS YP_179475.1 57238347 3232121 1385879..1386100 1 NC_003912.7 identified by similarity to PIR:F97876; ACP 1386100 3232121 CJE1489 Campylobacter jejuni RM1221 ACP YP_179475.1 1385879 D 195099 CDS YP_179476.1 57238348 3232122 1386094..1387002 1 NC_003912.7 identified by similarity to OMNI:NTL03PA02036; hypothetical protein 1387002 3232122 CJE1490 Campylobacter jejuni RM1221 hypothetical protein YP_179476.1 1386094 D 195099 CDS YP_179477.1 57238349 3232123 1387002..1388564 1 NC_003912.7 identified by match to protein family HMM TIGR01681; match to protein family HMM TIGR01686; HAD family phosphatase 1388564 3232123 CJE1491 Campylobacter jejuni RM1221 HAD family phosphatase YP_179477.1 1387002 D 195099 CDS YP_179478.1 57238350 3232124 1388554..1389615 1 NC_003912.7 FabH; beta-ketoacyl-ACP synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-ACP synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; paralogs which do not contain the N-X-R ACP-binding site motif; 3-oxoacyl-ACP synthase III 1389615 3232124 CJE1492 Campylobacter jejuni RM1221 3-oxoacyl-ACP synthase III YP_179478.1 1388554 D 195099 CDS YP_179479.1 57238351 3232125 1389615..1389836 1 NC_003912.7 identified by similarity to OMNI:NTL01XA1935; ACP 1389836 3232125 CJE1493 Campylobacter jejuni RM1221 ACP YP_179479.1 1389615 D 195099 CDS YP_179480.1 57238352 3232126 complement(1389850..1390440) 1 NC_003912.7 hypothetical protein 1390440 3232126 CJE1494 Campylobacter jejuni RM1221 hypothetical protein YP_179480.1 1389850 R 195099 CDS YP_179481.1 57238353 3232127 complement(1390461..1390865) 1 NC_003912.7 hypothetical protein 1390865 3232127 CJE1495 Campylobacter jejuni RM1221 hypothetical protein YP_179481.1 1390461 R 195099 CDS YP_179482.1 57238354 3232128 1391138..1392646 1 NC_003912.7 identified by match to protein family HMM PF00501; amino acid adenylation domain-containing protein 1392646 3232128 CJE1496 Campylobacter jejuni RM1221 amino acid adenylation domain-containing protein YP_179482.1 1391138 D 195099 CDS YP_179483.1 57238355 3232129 1392639..1393364 1 NC_003912.7 identified by match to protein family HMM PF00583; acetyltransferase 1393364 3232129 CJE1497 Campylobacter jejuni RM1221 acetyltransferase YP_179483.1 1392639 D 195099 CDS YP_179484.1 57238356 3232130 1393364..1394083 1 NC_003912.7 identified by match to protein family HMM PF00551; formyl transferase 1394083 3232130 CJE1498 Campylobacter jejuni RM1221 formyl transferase YP_179484.1 1393364 D 195099 CDS YP_179485.1 57238357 3232131 1394085..1394309 1 NC_003912.7 identified by similarity to GB:AAB41298.1; ACP 1394309 3232131 CJE1499 Campylobacter jejuni RM1221 ACP YP_179485.1 1394085 D 195099 CDS YP_179486.1 57238358 3232132 1394318..1395232 1 NC_003912.7 identified by similarity to OMNI:NTL01CA0429; match to protein family HMM PF01522; polysaccharide deacetylase 1395232 3232132 CJE1500 Campylobacter jejuni RM1221 polysaccharide deacetylase YP_179486.1 1394318 D 195099 CDS YP_179487.1 57238359 3232133 1395229..1396227 1 NC_003912.7 identified by similarity to OMNI:NT01MC2981; hypothetical protein 1396227 3232133 CJE1501 Campylobacter jejuni RM1221 hypothetical protein YP_179487.1 1395229 D 195099 CDS YP_179488.1 57238360 3232134 1396224..1396556 1 NC_003912.7 identified by similarity to SP:P29810; aminoglycoside N3-acetyltransferase 1396556 3232134 CJE1502 Campylobacter jejuni RM1221 aminoglycoside N3-acetyltransferase YP_179488.1 1396224 D 195099 CDS YP_179489.1 57238361 3232135 1396855..1397013 1 NC_003912.7 hypothetical protein 1397013 3232135 CJE1503 Campylobacter jejuni RM1221 hypothetical protein YP_179489.1 1396855 D 195099 CDS YP_179490.1 57238362 3232136 complement(1397010..1398221) 1 NC_003912.7 identified by similarity to PIR:C81274; hypothetical protein 1398221 3232136 CJE1504 Campylobacter jejuni RM1221 hypothetical protein YP_179490.1 1397010 R 195099 CDS YP_179491.1 57238363 3232137 1398312..1399010 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01253; match to protein family HMM PF02348; acylneuraminate cytidylyltransferase 1399010 neuA 3232137 neuA Campylobacter jejuni RM1221 acylneuraminate cytidylyltransferase YP_179491.1 1398312 D 195099 CDS YP_179492.1 57238364 3232138 1398994..1399818 1 NC_003912.7 identified by similarity to GP:5616173; flagellar protein 1399818 3232138 CJE1507 Campylobacter jejuni RM1221 flagellar protein YP_179492.1 1398994 D 195099 CDS YP_179493.1 57238365 3232139 1399815..1400288 1 NC_003912.7 identified by match to protein family HMM PF00583; acetyltransferase 1400288 3232139 CJE1508 Campylobacter jejuni RM1221 acetyltransferase YP_179493.1 1399815 D 195099 CDS YP_179494.1 57238366 3232140 complement(1400253..1400999) 1 NC_003912.7 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamide and glutamine to imidazole-glycerolphosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1400999 hisF-1 3232140 hisF-1 Campylobacter jejuni RM1221 imidazole glycerol phosphate synthase subunit HisF YP_179494.1 1400253 R 195099 CDS YP_179495.1 57238367 3232141 complement(1401000..1401605) 1 NC_003912.7 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1401605 hisH 3232141 hisH Campylobacter jejuni RM1221 imidazole glycerol phosphate synthase subunit HisH YP_179495.1 1401000 R 195099 CDS YP_179496.1 57238368 3232142 complement(1401602..1402738) 1 NC_003912.7 identified by similarity to GP:15559182; flagellin modification protein, PseA 1402738 3232142 CJE1511 Campylobacter jejuni RM1221 flagellin modification protein, PseA YP_179496.1 1401602 R 195099 CDS YP_179497.1 57238369 3232143 1402996..1404027 1 NC_003912.7 identified by similarity to GB:AAM76272.1; match to protein family HMM PF01354; match to protein family HMM PF03102; N-acetylneuraminic acid synthetase 1404027 neuB 3232143 neuB Campylobacter jejuni RM1221 N-acetylneuraminic acid synthetase YP_179497.1 1402996 D 195099 CDS YP_179498.1 57238370 3232144 1404024..1404995 1 NC_003912.7 identified by similarity to GP:20559811; match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 1404995 3232144 CJE1513 Campylobacter jejuni RM1221 NAD-dependent epimerase/dehydratase YP_179498.1 1404024 D 195099 CDS YP_179499.1 57238371 3232145 1404988..1406133 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01262; match to protein family HMM PF01041; aminotransferase 1406133 3232145 CJE1514 Campylobacter jejuni RM1221 aminotransferase YP_179499.1 1404988 D 195099 CDS YP_179500.1 57238372 3232146 1406353..1406724 1 NC_003912.7 identified by similarity to SP:P77398; formyltransferase 1406724 3232146 CJE1515 Campylobacter jejuni RM1221 formyltransferase YP_179500.1 1406353 D 195099 CDS YP_179501.1 57238373 3232147 1406883..1407887 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01269; match to protein family HMM PF01354; match to protein family HMM PF03102; N-acetylneuraminic acid synthetase 1407887 ptmC 3232147 ptmC Campylobacter jejuni RM1221 N-acetylneuraminic acid synthetase YP_179501.1 1406883 D 195099 CDS YP_179502.1 57238374 3232148 1407868..1409034 1 NC_003912.7 identified by similarity to GP:11095582; match to protein family HMM PF02350; UDP-N-acetylglucosamine 2-epimerase 1409034 neuC 3232148 neuC Campylobacter jejuni RM1221 UDP-N-acetylglucosamine 2-epimerase YP_179502.1 1407868 D 195099 CDS YP_179503.1 57238375 3232149 1409043..1410068 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01270; match to protein family HMM PF00483; match to protein family HMM PF00571; nucleotidyltransferase 1410068 3232149 CJE1518 Campylobacter jejuni RM1221 nucleotidyltransferase YP_179503.1 1409043 D 195099 CDS YP_179504.1 57238376 3232150 1410065..1410970 1 NC_003912.7 identified by similarity to GP:27354272; hypothetical protein 1410970 3232150 CJE1519 Campylobacter jejuni RM1221 hypothetical protein YP_179504.1 1410065 D 195099 CDS YP_179505.1 57238377 3232151 1410963..1411670 1 NC_003912.7 identified by similarity to SP:Q45982; match to protein family HMM PF02348; posttranslational flagellin modification protein B 1411670 ptmB 3232151 ptmB Campylobacter jejuni RM1221 posttranslational flagellin modification protein B YP_179505.1 1410963 D 195099 CDS YP_179506.1 57238378 3232152 1411670..1412440 1 NC_003912.7 identified by similarity to SP:Q45983; match to protein family HMM PF00106; flagellin modification protein A 1412440 ptmA 3232152 ptmA Campylobacter jejuni RM1221 flagellin modification protein A YP_179506.1 1411670 D 195099 CDS YP_179507.1 57238379 3232153 1412428..1414389 1 NC_003912.7 identified by similarity to PIR:B81277; match to protein family HMM PF01973; motility accessory factor 1414389 maf-1 3232153 maf-1 Campylobacter jejuni RM1221 motility accessory factor YP_179507.1 1412428 D 195099 CDS YP_179508.1 57238380 3232154 1414365..1416245 1 NC_003912.7 identified by similarity to PIR:C81277; match to protein family HMM PF01973; motility accessory factor 1416245 maf-2 3232154 maf-2 Campylobacter jejuni RM1221 motility accessory factor YP_179508.1 1414365 D 195099 CDS YP_179509.1 57238381 3232155 1416258..1418174 1 NC_003912.7 identified by similarity to PIR:C81275; match to protein family HMM PF01973; motility accessory factor 1418174 maf-3 3232155 maf-3 Campylobacter jejuni RM1221 motility accessory factor YP_179509.1 1416258 D 195099 CDS YP_179510.1 57238382 3232156 1418150..1420057 1 NC_003912.7 identified by similarity to PIR:F81277; match to protein family HMM PF01973; motility accessory factor 1420057 maf-4 3232156 maf-4 Campylobacter jejuni RM1221 motility accessory factor YP_179510.1 1418150 D 195099 CDS YP_179511.1 57238729 3232517 complement(1420088..1421809) 1 NC_003912.7 FlaB; structural flagella protein; in Helicobacter the flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin 1421809 flaB 3232517 flaB Campylobacter jejuni RM1221 flagellin YP_179511.1 1420088 R 195099 CDS YP_179512.1 57238715 3232503 complement(1421811..1421912) 1 NC_003912.7 hypothetical protein 1421912 3232503 CJE1527 Campylobacter jejuni RM1221 hypothetical protein YP_179512.1 1421811 R 195099 CDS YP_179513.1 57238714 3232502 complement(1421954..1423675) 1 NC_003912.7 FlaA; structural flagella protein; in Helicobacter the flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin 1423675 flaA 3232502 flaA Campylobacter jejuni RM1221 flagellin YP_179513.1 1421954 R 195099 CDS YP_179514.1 57238383 3232157 complement(1423772..1425589) 1 NC_003912.7 identified by similarity to PIR:A81278; match to protein family HMM PF01973; motility accessory factor 1425589 maf-5 3232157 maf-5 Campylobacter jejuni RM1221 motility accessory factor YP_179514.1 1423772 R 195099 CDS YP_179515.1 57238384 3232158 complement(1425586..1427409) 1 NC_003912.7 identified by similarity to PIR:B81278; match to protein family HMM PF01973; motility accessory factor 1427409 maf-6 3232158 maf-6 Campylobacter jejuni RM1221 motility accessory factor YP_179515.1 1425586 R 195099 CDS YP_179516.1 57238385 3232159 complement(1427419..1428660) 1 NC_003912.7 hypothetical protein 1428660 3232159 CJE1531 Campylobacter jejuni RM1221 hypothetical protein YP_179516.1 1427419 R 195099 CDS YP_179517.1 57238386 3232160 complement(1428660..1429175) 1 NC_003912.7 identified by similarity to PIR:D81278; transformation system protein 1429175 ctsG 3232160 ctsG Campylobacter jejuni RM1221 transformation system protein YP_179517.1 1428660 R 195099 CDS YP_179518.1 57238387 3232161 complement(1429176..1430183) 1 NC_003912.7 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 1430183 gcp 3232161 gcp Campylobacter jejuni RM1221 DNA-binding/iron metalloprotein/AP endonuclease YP_179518.1 1429176 R 195099 CDS YP_179519.1 57238388 3232162 complement(1430180..1431574) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00347; hypothetical protein 1431574 3232162 CJE1534 Campylobacter jejuni RM1221 hypothetical protein YP_179519.1 1430180 R 195099 CDS YP_179520.1 57238389 3232163 complement(1431576..1432646) 1 NC_003912.7 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1432646 dxr 3232163 dxr Campylobacter jejuni RM1221 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_179520.1 1431576 R 195099 CDS YP_179521.1 57238390 3232164 complement(1432643..1433368) 1 NC_003912.7 identified by similarity to OMNI:VC2255; match to protein family HMM PF01148; phosphatidate cytidylyltransferase 1433368 cdsA 3232164 cdsA Campylobacter jejuni RM1221 phosphatidate cytidylyltransferase YP_179521.1 1432643 R 195099 CDS YP_179522.1 57238391 3232165 complement(1433377..1433715) 1 NC_003912.7 hypothetical protein 1433715 3232165 CJE1537 Campylobacter jejuni RM1221 hypothetical protein YP_179522.1 1433377 R 195099 CDS YP_179523.1 57238392 3232166 complement(1433717..1435024) 1 NC_003912.7 identified by similarity to GP:19110786; match to protein family HMM PF05670; fibronectin/fibrinogen binding protein 1435024 3232166 CJE1538 Campylobacter jejuni RM1221 fibronectin/fibrinogen binding protein YP_179523.1 1433717 R 195099 CDS YP_179524.1 57238393 3232167 1435086..1435661 1 NC_003912.7 identified by similarity to SP:P32173; molybdopterin-guanine dinucleotide biosynthesis protein 1435661 3232167 CJE1539 Campylobacter jejuni RM1221 molybdopterin-guanine dinucleotide biosynthesis protein YP_179524.1 1435086 D 195099 CDS YP_179525.1 57238394 3232168 1435658..1436647 1 NC_003912.7 identified by similarity to GP:2243138; match to protein family HMM PF02253; phospholipase A 1436647 pldA 3232168 pldA Campylobacter jejuni RM1221 phospholipase A YP_179525.1 1435658 D 195099 CDS YP_179526.1 57238395 3232169 1436733..1437701 1 NC_003912.7 identified by similarity to GB:CAA61301.1; match to protein family HMM PF01032; enterochelin ABC transporter permease 1437701 ceuB 3232169 ceuB Campylobacter jejuni RM1221 enterochelin ABC transporter permease YP_179526.1 1436733 D 195099 CDS YP_179527.1 57238396 3232170 1437694..1438632 1 NC_003912.7 identified by similarity to GP:1107529; match to protein family HMM PF01032; enterochelin ABC transporter permease 1438632 ceuC 3232170 ceuC Campylobacter jejuni RM1221 enterochelin ABC transporter permease YP_179527.1 1437694 D 195099 CDS YP_179528.1 57238397 3232171 1438629..1439384 1 NC_003912.7 identified by similarity to GP:1107530; match to protein family HMM PF00005; enterochelin ABC transporter ATP-binding protein 1439384 ceuD 3232171 ceuD Campylobacter jejuni RM1221 enterochelin ABC transporter ATP-binding protein YP_179528.1 1438629 D 195099 CDS YP_179529.1 57238398 3232173 complement(1440614..1441168) 1 NC_003912.7 identified by similarity to GP:1107532; hypothetical protein 1441168 3232173 CJE1545 Campylobacter jejuni RM1221 hypothetical protein YP_179529.1 1440614 R 195099 CDS YP_179530.1 57238399 3232174 complement(1441303..1443135) 1 NC_003912.7 identified by similarity to SP:Q9S1E5; match to protein family HMM PF02335; cytochrome C552 1443135 nrfA 3232174 nrfA Campylobacter jejuni RM1221 cytochrome C552 YP_179530.1 1441303 R 195099 CDS YP_179531.1 57238400 3232175 complement(1443150..1443665) 1 NC_003912.7 identified by similarity to SP:Q9S1E6; match to protein family HMM PF03264; cytochrome C-type protein nrfH 1443665 nrfH 3232175 nrfH Campylobacter jejuni RM1221 cytochrome C-type protein nrfH YP_179531.1 1443150 R 195099 CDS YP_179532.1 57238401 3232176 1443853..1445937 1 NC_003912.7 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 1445937 ppk 3232176 ppk Campylobacter jejuni RM1221 polyphosphate kinase YP_179532.1 1443853 D 195099 CDS YP_179533.1 57238402 3232178 complement(1447310..1447705) 1 NC_003912.7 hypothetical protein 1447705 3232178 CJE1550 Campylobacter jejuni RM1221 hypothetical protein YP_179533.1 1447310 R 195099 CDS YP_179534.1 57238403 3232179 complement(1447900..1448118) 1 NC_003912.7 hypothetical protein 1448118 3232179 CJE1551 Campylobacter jejuni RM1221 hypothetical protein YP_179534.1 1447900 R 195099 CDS YP_179535.1 57238404 3232180 complement(1448158..1448358) 1 NC_003912.7 hypothetical protein 1448358 3232180 CJE1552 Campylobacter jejuni RM1221 hypothetical protein YP_179535.1 1448158 R 195099 CDS YP_179536.1 57238405 3232181 complement(1448923..1449375) 1 NC_003912.7 identified by similarity to GP:28974216; hypothetical protein 1449375 3232181 CJE1553 Campylobacter jejuni RM1221 hypothetical protein YP_179536.1 1448923 R 195099 CDS YP_179537.1 57238406 3232182 1449424..1450431 1 NC_003912.7 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1450431 ruvB 3232182 ruvB Campylobacter jejuni RM1221 Holliday junction DNA helicase RuvB YP_179537.1 1449424 D 195099 CDS YP_179538.1 57238407 3232183 1450435..1451478 1 NC_003912.7 identified by match to protein family HMM PF01594; hypothetical protein 1451478 3232183 CJE1555 Campylobacter jejuni RM1221 hypothetical protein YP_179538.1 1450435 D 195099 CDS YP_179539.1 57238408 3232184 complement(1451508..1452899) 1 NC_003912.7 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1452899 fumC 3232184 fumC Campylobacter jejuni RM1221 fumarate hydratase YP_179539.1 1451508 R 195099 CDS YP_179540.1 57238409 3232185 complement(1452955..1456080) 1 NC_003912.7 identified by match to protein family HMM PF00082; serine protease 1456080 3232185 CJE1557 Campylobacter jejuni RM1221 serine protease YP_179540.1 1452955 R 195099 CDS YP_179541.1 57238410 3232186 complement(1456083..1457879) 1 NC_003912.7 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1457879 glmS 3232186 glmS Campylobacter jejuni RM1221 glucosamine--fructose-6-phosphate aminotransferase YP_179541.1 1456083 R 195099 CDS YP_179542.1 57238411 3232187 complement(1457884..1460232) 1 NC_003912.7 GlnD family protein 1460232 3232187 CJE1559 Campylobacter jejuni RM1221 GlnD family protein YP_179542.1 1457884 R 195099 CDS YP_179543.1 57238412 3232188 1460376..1461440 1 NC_003912.7 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; hypothetical protein 1461440 3232188 CJE1560 Campylobacter jejuni RM1221 hypothetical protein YP_179543.1 1460376 D 195099 CDS YP_179544.1 57238413 3232189 1461450..1462769 1 NC_003912.7 identified by match to protein family HMM PF00860; xanthine/uracil permease 1462769 3232189 CJE1561 Campylobacter jejuni RM1221 xanthine/uracil permease YP_179544.1 1461450 D 195099 CDS YP_179545.1 57238414 3232190 1462783..1463226 1 NC_003912.7 identified by similarity to PIR:G64611; match to protein family HMM PF00156; nucleotide phosphoribosyltransferase 1463226 3232190 CJE1562 Campylobacter jejuni RM1221 nucleotide phosphoribosyltransferase YP_179545.1 1462783 D 195099 CDS YP_179546.1 57238415 3232191 1463271..1463969 1 NC_003912.7 identified by match to protein family HMM PF04333; VacJ family lipoprotein 1463969 3232191 CJE1563 Campylobacter jejuni RM1221 VacJ family lipoprotein YP_179546.1 1463271 D 195099 CDS YP_179547.1 57238416 3232192 1463979..1464548 1 NC_003912.7 identified by similarity to GP:4336801; match to protein family HMM PF05494; toluene tolerance protein 1464548 3232192 CJE1564 Campylobacter jejuni RM1221 toluene tolerance protein YP_179547.1 1463979 D 195099 CDS YP_179548.1 57238417 3232193 1464548..1467019 1 NC_003912.7 identified by similarity to OMNI:BB0252; hypothetical protein 1467019 3232193 CJE1565 Campylobacter jejuni RM1221 hypothetical protein YP_179548.1 1464548 D 195099 CDS YP_179549.1 57238418 3232194 complement(1467050..1467652) 1 NC_003912.7 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 1467652 3232194 CJE1566 Campylobacter jejuni RM1221 deoxyribonucleotide triphosphate pyrophosphatase YP_179549.1 1467050 R 195099 CDS YP_179550.1 57238419 3232195 1467818..1469119 1 NC_003912.7 identified by similarity to SP:P77726; match to protein family HMM PF00083; multidrug resistance efflux transporter 1469119 3232195 CJE1567 Campylobacter jejuni RM1221 multidrug resistance efflux transporter YP_179550.1 1467818 D 195099 CDS YP_179551.1 57238420 3232196 complement(1469116..1470789) 1 NC_003912.7 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding domain-containing protein 1470789 3232196 CJE1568 Campylobacter jejuni RM1221 iron-sulfur cluster-binding domain-containing protein YP_179551.1 1469116 R 195099 CDS YP_179552.1 57238421 3232197 1470867..1472189 1 NC_003912.7 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 1472189 selA 3232197 selA Campylobacter jejuni RM1221 selenocysteine synthase YP_179552.1 1470867 D 195099 CDS YP_179553.1 57238422 3232198 1472186..1473991 1 NC_003912.7 identified by similarity to SP:P14081; match to protein family HMM PF00009; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific elongation factor 1473991 selB 3232198 selB Campylobacter jejuni RM1221 selenocysteine-specific elongation factor YP_179553.1 1472186 D 195099 CDS YP_179554.1 57238423 3232199 1474040..1474750 1 NC_003912.7 identified by similarity to OMNI:NTL01AA01434; hypothetical protein 1474750 3232199 CJE1571 Campylobacter jejuni RM1221 hypothetical protein YP_179554.1 1474040 D 195099 CDS YP_179555.1 57238424 3232200 1474756..1475286 1 NC_003912.7 lipoprotein 1475286 3232200 CJE1572 Campylobacter jejuni RM1221 lipoprotein YP_179555.1 1474756 D 195099 CDS YP_179556.1 57238425 3232201 complement(1475331..1475822) 1 NC_003912.7 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 1475822 fldA 3232201 fldA Campylobacter jejuni RM1221 flavodoxin FldA YP_179556.1 1475331 R 195099 CDS YP_179557.1 57238426 3232202 complement(1475822..1476517) 1 NC_003912.7 hypothetical protein 1476517 3232202 CJE1574 Campylobacter jejuni RM1221 hypothetical protein YP_179557.1 1475822 R 195099 CDS YP_179558.1 57238427 3232203 complement(1476520..1476834) 1 NC_003912.7 identified by similarity to OMNI:NTL01BH0516; hypothetical protein 1476834 3232203 CJE1575 Campylobacter jejuni RM1221 hypothetical protein YP_179558.1 1476520 R 195099 CDS YP_179559.1 57238428 3232204 1477005..1478429 1 NC_003912.7 identified by similarity to SP:Q59170; match to protein family HMM PF00199; catalase 1478429 katA 3232204 katA Campylobacter jejuni RM1221 catalase YP_179559.1 1477005 D 195099 CDS YP_179560.1 57238429 3232205 1478486..1478956 1 NC_003912.7 identified by match to protein family HMM PF00023; ankyrin 1478956 3232205 CJE1577 Campylobacter jejuni RM1221 ankyrin YP_179560.1 1478486 D 195099 CDS YP_179561.1 57238430 3232206 complement(1478957..1479613) 1 NC_003912.7 identified by similarity to OMNI:SAG1820; hypothetical protein 1479613 3232206 CJE1578 Campylobacter jejuni RM1221 hypothetical protein YP_179561.1 1478957 R 195099 CDS YP_179562.1 57238431 3232207 1479781..1480143 1 NC_003912.7 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 1480143 3232207 CJE1579 Campylobacter jejuni RM1221 endoribonuclease L-PSP YP_179562.1 1479781 D 195099 CDS YP_179563.1 57238432 3232209 1481600..1482763 1 NC_003912.7 identified by similarity to SP:P06721; match to protein family HMM PF01053; cystathionine beta-lyase 1482763 metC 3232209 metC Campylobacter jejuni RM1221 cystathionine beta-lyase YP_179563.1 1481600 D 195099 CDS YP_179564.1 57238433 3232210 1482773..1484140 1 NC_003912.7 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1484140 purB-2 3232210 purB-2 Campylobacter jejuni RM1221 adenylosuccinate lyase YP_179564.1 1482773 D 195099 CDS YP_179565.1 57238434 3232211 1484149..1485489 1 NC_003912.7 identified by match to protein family HMM PF03972; MmgE/PrpD family protein 1485489 3232211 CJE1583 Campylobacter jejuni RM1221 MmgE/PrpD family protein YP_179565.1 1484149 D 195099 CDS YP_179566.1 57238435 3232212 1485571..1485795 1 NC_003912.7 identified by match to protein family HMM PF04023; feoA family protein 1485795 3232212 CJE1584 Campylobacter jejuni RM1221 feoA family protein YP_179566.1 1485571 D 195099 CDS YP_179567.1 57238436 3232214 complement(1487629..1489122) 1 NC_003912.7 identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391; hydrogenase, (NiFe)/(NiFeSe) small subunit family 1489122 3232214 CJE1586 Campylobacter jejuni RM1221 hydrogenase, (NiFe)/(NiFeSe) small subunit family YP_179567.1 1487629 R 195099 CDS YP_179568.1 57238437 3232215 complement(1489126..1489950) 1 NC_003912.7 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1489950 fabI 3232215 fabI Campylobacter jejuni RM1221 enoyl-ACP reductase YP_179568.1 1489126 R 195099 CDS YP_179569.1 57238438 3232216 complement(1489954..1490625) 1 NC_003912.7 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1490625 tpiA 3232216 tpiA Campylobacter jejuni RM1221 triosephosphate isomerase YP_179569.1 1489954 R 195099 CDS YP_179570.1 57238439 3232217 complement(1490622..1491824) 1 NC_003912.7 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1491824 pgk 3232217 pgk Campylobacter jejuni RM1221 phosphoglycerate kinase YP_179570.1 1490622 R 195099 CDS YP_179571.1 57238440 3232218 complement(1491827..1492825) 1 NC_003912.7 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase A 1492825 gapA 3232218 gapA Campylobacter jejuni RM1221 glyceraldehyde 3-phosphate dehydrogenase A YP_179571.1 1491827 R 195099 CDS YP_179572.1 57238441 3232219 1492885..1493430 1 NC_003912.7 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase 1493430 nadD 3232219 nadD Campylobacter jejuni RM1221 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_179572.1 1492885 D 195099 CDS YP_179573.1 57238442 3232220 1493458..1493784 1 NC_003912.7 identified by similarity to OMNI:HP1414; match to protein family HMM PF02410; match to protein family HMM TIGR00090; hypothetical protein 1493784 3232220 CJE1592 Campylobacter jejuni RM1221 hypothetical protein YP_179573.1 1493458 D 195099 CDS YP_179574.1 57238443 3232221 complement(1493815..1494192) 1 NC_003912.7 identified by similarity to OMNI:NTL02YP3559; match to protein family HMM PF06476; hypothetical protein 1494192 3232221 CJE1593 Campylobacter jejuni RM1221 hypothetical protein YP_179574.1 1493815 R 195099 CDS YP_179575.1 57238444 3232222 complement(1494240..1495610) 1 NC_003912.7 identified by similarity to SP:P26276; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase/phosphoglucomutase 1495610 algC 3232222 algC Campylobacter jejuni RM1221 phosphomannomutase/phosphoglucomutase YP_179575.1 1494240 R 195099 CDS YP_179576.1 57238445 3232223 1495732..1496268 1 NC_003912.7 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1496268 fliL 3232223 fliL Campylobacter jejuni RM1221 flagellar basal body-associated protein FliL YP_179576.1 1495732 D 195099 CDS YP_179577.1 57238446 3232224 1496268..1496615 1 NC_003912.7 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1496615 acpS 3232224 acpS Campylobacter jejuni RM1221 4'-phosphopantetheinyl transferase YP_179577.1 1496268 D 195099 CDS YP_179578.1 57238447 3232225 complement(1496616..1497035) 1 NC_003912.7 hypothetical protein 1497035 3232225 CJE1597 Campylobacter jejuni RM1221 hypothetical protein YP_179578.1 1496616 R 195099 CDS YP_179579.1 57238448 3232226 complement(1497032..1498393) 1 NC_003912.7 identified by match to protein family HMM PF00067; cytochrome P450 family protein 1498393 3232226 CJE1598 Campylobacter jejuni RM1221 cytochrome P450 family protein YP_179579.1 1497032 R 195099 CDS YP_179580.1 57238449 3232227 complement(1498390..1499511) 1 NC_003912.7 hypothetical protein 1499511 3232227 CJE1599 Campylobacter jejuni RM1221 hypothetical protein YP_179580.1 1498390 R 195099 CDS YP_179581.1 57238450 3232228 complement(1499584..1500768) 1 NC_003912.7 identified by similarity to GP:26109934; match to protein family HMM PF05159; capsule polysaccharide export protein KpsS 1500768 kpsS 3232228 kpsS Campylobacter jejuni RM1221 capsule polysaccharide export protein KpsS YP_179581.1 1499584 R 195099 CDS YP_179582.1 57238451 3232229 complement(1500765..1502837) 1 NC_003912.7 identified by similarity to SP:Q05013; match to protein family HMM PF05159; capsule polysaccharide export protein KpsC 1502837 kpsC 3232229 kpsC Campylobacter jejuni RM1221 capsule polysaccharide export protein KpsC YP_179582.1 1500765 R 195099 CDS YP_179583.1 57238452 3232230 complement(1502815..1504734) 1 NC_003912.7 identified by similarity to GP:29469161; capsular polysaccharide biosynthesis protein 1504734 3232230 CJE1602 Campylobacter jejuni RM1221 capsular polysaccharide biosynthesis protein YP_179583.1 1502815 R 195099 CDS YP_179584.1 57238453 3232231 complement(1504703..1506655) 1 NC_003912.7 identified by similarity to GP:6469930; capsular polysaccharide biosynthesis protein 1506655 3232231 CJE1603 Campylobacter jejuni RM1221 capsular polysaccharide biosynthesis protein YP_179584.1 1504703 R 195099 CDS YP_179585.1 57238454 3232232 complement(1506655..1508136) 1 NC_003912.7 identified by similarity to OMNI:MJ1101; capsular polysaccharide biosynthesis protein 1508136 3232232 CJE1604 Campylobacter jejuni RM1221 capsular polysaccharide biosynthesis protein YP_179585.1 1506655 R 195099 CDS YP_179586.1 57238455 3232233 complement(1508138..1508863) 1 NC_003912.7 identified by similarity to OMNI:NTL01PA0174; capsular polysaccharide biosynthesis protein 1508863 3232233 CJE1605 Campylobacter jejuni RM1221 capsular polysaccharide biosynthesis protein YP_179586.1 1508138 R 195099 CDS YP_179587.1 57238456 3232234 complement(1508850..1510151) 1 NC_003912.7 identified by match to protein family HMM PF00485; match to protein family HMM PF00702; haloacid dehalogenase-like hydrolase 1510151 3232234 CJE1606 Campylobacter jejuni RM1221 haloacid dehalogenase-like hydrolase YP_179587.1 1508850 R 195099 CDS YP_179588.1 57238457 3232235 complement(1510144..1510737) 1 NC_003912.7 hypothetical protein 1510737 3232235 CJE1607 Campylobacter jejuni RM1221 hypothetical protein YP_179588.1 1510144 R 195099 CDS YP_179589.1 57238458 3232236 complement(1510712..1511392) 1 NC_003912.7 identified by similarity to GB:AAK27852.1; match to protein family HMM PF00483; capsular biosynthesis nucleotidyltransferase 1511392 3232236 CJE1608 Campylobacter jejuni RM1221 capsular biosynthesis nucleotidyltransferase YP_179589.1 1510712 R 195099 CDS YP_179590.1 57238459 3232237 complement(1511380..1511985) 1 NC_003912.7 identified by similarity to SP:Q9AGY7; match to protein family HMM PF01380; match to protein family HMM TIGR00441; phosphoheptose isomerase 1511985 gmhA-2 3232237 gmhA-2 Campylobacter jejuni RM1221 phosphoheptose isomerase YP_179590.1 1511380 R 195099 CDS YP_179591.1 57238460 3232238 complement(1511973..1512992) 1 NC_003912.7 identified by match to protein family HMM PF00288; capsular biosynthesis sugar kinase 1512992 3232238 CJE1610 Campylobacter jejuni RM1221 capsular biosynthesis sugar kinase YP_179591.1 1511973 R 195099 CDS YP_179592.1 57238461 3232239 complement(1512989..1514020) 1 NC_003912.7 identified by similarity to SP:P32054; match to protein family HMM PF01370; GDP-mannose 4,6-dehydratase 1514020 wcbK 3232239 wcbK Campylobacter jejuni RM1221 GDP-mannose 4,6-dehydratase YP_179592.1 1512989 R 195099 CDS YP_179593.1 57238462 3232240 complement(1514017..1515066) 1 NC_003912.7 identified by similarity to SP:P32055; GDP-L-fucose synthetase 1515066 fcl 3232240 fcl Campylobacter jejuni RM1221 GDP-L-fucose synthetase YP_179593.1 1514017 R 195099 CDS YP_179594.1 57238463 3232241 complement(1515078..1516688) 1 NC_003912.7 identified by similarity to GP:27314628; capsular polysaccharide biosynthesis protein 1516688 3232241 CJE1613 Campylobacter jejuni RM1221 capsular polysaccharide biosynthesis protein YP_179594.1 1515078 R 195099 CDS YP_179595.1 57238464 3232242 complement(1516685..1518121) 1 NC_003912.7 hypothetical protein 1518121 3232242 CJE1614 Campylobacter jejuni RM1221 hypothetical protein YP_179595.1 1516685 R 195099 CDS YP_179596.1 57238465 3232243 complement(1518157..1519500) 1 NC_003912.7 identified by similarity to GP:13446686; match to protein family HMM PF00534; capsular polysaccharide biosynthesis glycosyltransferase WcbB 1519500 3232243 CJE1615 Campylobacter jejuni RM1221 capsular polysaccharide biosynthesis glycosyltransferase WcbB YP_179596.1 1518157 R 195099 CDS YP_179597.1 57238466 3232244 complement(1519503..1521104) 1 NC_003912.7 identified by similarity to SP:P46918; match to protein family HMM PF04464; capsular polysaccharide biosynthesis protein 1521104 3232244 CJE1616 Campylobacter jejuni RM1221 capsular polysaccharide biosynthesis protein YP_179597.1 1519503 R 195099 CDS YP_179598.1 57238467 3232245 complement(1521101..1522048) 1 NC_003912.7 identified by similarity to EGAD:20643; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; arabinose-5-phosphate isomerase 1522048 kpsF 3232245 kpsF Campylobacter jejuni RM1221 arabinose-5-phosphate isomerase YP_179598.1 1521101 R 195099 CDS YP_179599.1 57238468 3232246 complement(1522058..1523716) 1 NC_003912.7 identified by similarity to SP:Q03961; match to protein family HMM PF02563; capsular polysaccharide ABC transporter periplasmic polysaccharide-binding protein 1523716 kpsD 3232246 kpsD Campylobacter jejuni RM1221 capsular polysaccharide ABC transporter periplasmic polysaccharide-binding protein YP_179599.1 1522058 R 195099 CDS YP_179600.1 57238469 3232247 complement(1523718..1524836) 1 NC_003912.7 identified by similarity to SP:P42214; match to protein family HMM PF02706; capsular polysaccharide ABC transporter 1524836 kpsE 3232247 kpsE Campylobacter jejuni RM1221 capsular polysaccharide ABC transporter YP_179600.1 1523718 R 195099 CDS YP_179601.1 57238470 3232248 complement(1524836..1525498) 1 NC_003912.7 identified by similarity to SP:P24586; match to protein family HMM PF00005; capsular polysaccharide ABC transporter ATP-binding protein 1525498 kpsT 3232248 kpsT Campylobacter jejuni RM1221 capsular polysaccharide ABC transporter ATP-binding protein YP_179601.1 1524836 R 195099 CDS YP_179602.1 57238471 3232249 complement(1525495..1526277) 1 NC_003912.7 identified by similarity to SP:P23889; match to protein family HMM PF01061; capsular polysaccharide ABC transporter permease 1526277 kpsM 3232249 kpsM Campylobacter jejuni RM1221 capsular polysaccharide ABC transporter permease YP_179602.1 1525495 R 195099 CDS YP_179603.1 57238472 3232250 complement(1526349..1526756) 1 NC_003912.7 identified by similarity to GP:26110162; hypothetical protein 1526756 3232250 CJE1622 Campylobacter jejuni RM1221 hypothetical protein YP_179603.1 1526349 R 195099 CDS YP_179604.1 57238473 3232251 1526831..1527394 1 NC_003912.7 hypothetical protein 1527394 3232251 CJE1623 Campylobacter jejuni RM1221 hypothetical protein YP_179604.1 1526831 D 195099 CDS YP_179605.1 57238474 3232252 1527430..1528119 1 NC_003912.7 deoxyuridine triphosphatase 1528119 3232252 CJE1624 Campylobacter jejuni RM1221 deoxyuridine triphosphatase YP_179605.1 1527430 D 195099 CDS YP_179606.1 57238475 3232253 1528121..1528834 1 NC_003912.7 identified by match to protein family HMM PF04401; hypothetical protein 1528834 3232253 CJE1625 Campylobacter jejuni RM1221 hypothetical protein YP_179606.1 1528121 D 195099 CDS YP_179607.1 57238476 3232254 complement(1528817..1529782) 1 NC_003912.7 identified by match to protein family HMM PF01171; PP-loop family protein 1529782 3232254 CJE1626 Campylobacter jejuni RM1221 PP-loop family protein YP_179607.1 1528817 R 195099 CDS YP_179608.1 57238477 3232255 complement(1529772..1531091) 1 NC_003912.7 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; tRNA modifying protein 1531091 yliG 3232255 yliG Campylobacter jejuni RM1221 tRNA modifying protein YP_179608.1 1529772 R 195099 CDS YP_179609.1 57238478 3232256 1531165..1532262 1 NC_003912.7 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 1532262 prfB 3232256 prfB Campylobacter jejuni RM1221 peptide chain release factor 2 YP_179609.1 1531165 D 195099 CDS YP_179610.1 57238479 3232257 complement(1532420..1532599) 1 NC_003912.7 identified by similarity to SP:Q8ENT9; hypothetical protein 1532599 3232257 CJE1629 Campylobacter jejuni RM1221 hypothetical protein YP_179610.1 1532420 R 195099 CDS YP_179611.1 57238480 3232258 1532637..1532771 1 NC_003912.7 hypothetical protein 1532771 3232258 CJE1630 Campylobacter jejuni RM1221 hypothetical protein YP_179611.1 1532637 D 195099 CDS YP_179612.1 57238481 3232259 complement(1532855..1533973) 1 NC_003912.7 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 1533973 truD 3232259 truD Campylobacter jejuni RM1221 tRNA pseudouridine synthase D YP_179612.1 1532855 R 195099 CDS YP_179613.1 57238482 3232260 complement(1533942..1534763) 1 NC_003912.7 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 1534763 3232260 CJE1632 Campylobacter jejuni RM1221 thiamine monophosphate kinase YP_179613.1 1533942 R 195099 CDS YP_179614.1 57238483 3232261 1534850..1535923 1 NC_003912.7 identified by similarity to OMNI:HP0468; hypothetical protein 1535923 3232261 CJE1633 Campylobacter jejuni RM1221 hypothetical protein YP_179614.1 1534850 D 195099 CDS YP_179615.1 57238484 3232262 1535920..1536303 1 NC_003912.7 identified by similarity to OMNI:HP0811; hypothetical protein 1536303 3232262 CJE1634 Campylobacter jejuni RM1221 hypothetical protein YP_179615.1 1535920 D 195099 CDS YP_179616.1 57238485 3232263 1536293..1536979 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01398; match to protein family HMM PF03602; match to protein family HMM TIGR00095; site-specific DNA methyltransferase 1536979 3232263 CJE1635 Campylobacter jejuni RM1221 site-specific DNA methyltransferase YP_179616.1 1536293 D 195099 CDS YP_179617.1 57238486 3232264 1537038..1538084 1 NC_003912.7 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1538084 flgI 3232264 flgI Campylobacter jejuni RM1221 flagellar basal body P-ring protein YP_179617.1 1537038 D 195099 CDS YP_179618.1 57238487 3232265 1538084..1538425 1 NC_003912.7 identified by similarity to SP:O25027; hypothetical protein 1538425 3232265 CJE1637 Campylobacter jejuni RM1221 hypothetical protein YP_179618.1 1538084 D 195099 CDS YP_179619.1 57238488 3232266 1538488..1538685 1 NC_003912.7 identified by similarity to GP:2935678; hypothetical protein 1538685 3232266 CJE1638 Campylobacter jejuni RM1221 hypothetical protein YP_179619.1 1538488 D 195099 CDS YP_179620.1 57238489 3232267 1538728..1539162 1 NC_003912.7 identified by similarity to OMNI:HP1120; hypothetical protein 1539162 3232267 CJE1639 Campylobacter jejuni RM1221 hypothetical protein YP_179620.1 1538728 D 195099 CDS YP_179621.1 57238490 3232268 1539172..1540998 1 NC_003912.7 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1540998 flgK 3232268 flgK Campylobacter jejuni RM1221 flagellar hook-associated protein FlgK YP_179621.1 1539172 D 195099 CDS YP_179622.1 57238491 3232269 1541015..1541779 1 NC_003912.7 identified by similarity to OMNI:NTL02LI0846; hypothetical protein 1541779 3232269 CJE1641 Campylobacter jejuni RM1221 hypothetical protein YP_179622.1 1541015 D 195099 CDS YP_179623.1 57238492 3232270 1541783..1542547 1 NC_003912.7 identified by similarity to OMNI:NTL01PM0363; match to protein family HMM PF01925; hypothetical protein 1542547 3232270 CJE1642 Campylobacter jejuni RM1221 hypothetical protein YP_179623.1 1541783 D 195099 CDS YP_179624.1 57238493 3232271 complement(1542540..1543721) 1 NC_003912.7 identified by similarity to GB:AAP87276.1; match to protein family HMM PF00482; general secretory pathway protein F 1543721 ctsF 3232271 ctsF Campylobacter jejuni RM1221 general secretory pathway protein F YP_179624.1 1542540 R 195099 CDS YP_179625.1 57238494 3232272 complement(1543718..1545277) 1 NC_003912.7 identified by similarity to GP:4139237; match to protein family HMM PF00437; general secretory pathway protein E 1545277 ctsE 3232272 ctsE Campylobacter jejuni RM1221 general secretory pathway protein E YP_179625.1 1543718 R 195099 CDS YP_179626.1 57238495 3232273 complement(1545267..1545854) 1 NC_003912.7 identified by similarity to PIR:E81293; transformation system protein 1545854 ctsX 3232273 ctsX Campylobacter jejuni RM1221 transformation system protein YP_179626.1 1545267 R 195099 CDS YP_179627.1 57238496 3232274 complement(1545858..1546466) 1 NC_003912.7 identified by similarity to GB:BAC43933.1; transformation system protein 1546466 ctsP 3232274 ctsP Campylobacter jejuni RM1221 transformation system protein YP_179627.1 1545858 R 195099 CDS YP_179628.1 57238497 3232275 complement(1546459..1547871) 1 NC_003912.7 identified by similarity to SP:P31780; match to protein family HMM PF00263; general secretory pathway protein D 1547871 ctsD 3232275 ctsD Campylobacter jejuni RM1221 general secretory pathway protein D YP_179628.1 1546459 R 195099 CDS YP_179629.1 57238498 3232276 complement(1547849..1548160) 1 NC_003912.7 identified by similarity to GP:27361210; transformation system protein 1548160 ctsR 3232276 ctsR Campylobacter jejuni RM1221 transformation system protein YP_179629.1 1547849 R 195099 CDS YP_179630.1 57238499 3232277 complement(1548184..1551744) 1 NC_003912.7 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; pyruvate ferredoxin/flavodoxin oxidoreductase 1551744 3232277 CJE1649 Campylobacter jejuni RM1221 pyruvate ferredoxin/flavodoxin oxidoreductase YP_179630.1 1548184 R 195099 CDS YP_179631.1 57238500 3232278 complement(1551837..1552478) 1 NC_003912.7 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD-superfamily hydrolase, subfamily IA, variant 1 family protein 1552478 3232278 CJE1650 Campylobacter jejuni RM1221 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein YP_179631.1 1551837 R 195099 CDS YP_179632.1 57238501 3232279 complement(1552478..1553437) 1 NC_003912.7 identified by similarity to GP:2062640; match to protein family HMM PF00691; match to protein family HMM PF01389; fibronectin-binding protein 1553437 cadF 3232279 cadF Campylobacter jejuni RM1221 fibronectin-binding protein YP_179632.1 1552478 R 195099 CDS YP_179633.1 57238502 3232280 complement(1553562..1553951) 1 NC_003912.7 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1553951 rpsI 3232280 rpsI Campylobacter jejuni RM1221 30S ribosomal protein S9 YP_179633.1 1553562 R 195099 CDS YP_179634.1 57238503 3232281 complement(1553954..1554379) 1 NC_003912.7 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1554379 rplM 3232281 rplM Campylobacter jejuni RM1221 50S ribosomal protein L13 YP_179634.1 1553954 R 195099 CDS YP_179635.1 57238504 3232282 complement(1554463..1557228) 1 NC_003912.7 identified by similarity to PIR:A71805; match to protein family HMM PF00580; recombination protein RecB 1557228 3232282 CJE1654 Campylobacter jejuni RM1221 recombination protein RecB YP_179635.1 1554463 R 195099 CDS YP_179636.1 57238505 3232283 complement(1557225..1559591) 1 NC_003912.7 identified by similarity to OMNI:HP1089; hypothetical protein 1559591 3232283 CJE1655 Campylobacter jejuni RM1221 hypothetical protein YP_179636.1 1557225 R 195099 CDS YP_179637.1 57238506 3232284 complement(1559588..1560109) 1 NC_003912.7 identified by similarity to GP:23497165; lipoprotein 1560109 3232284 CJE1656 Campylobacter jejuni RM1221 lipoprotein YP_179637.1 1559588 R 195099 CDS YP_179638.1 57238507 3232285 complement(1560096..1560698) 1 NC_003912.7 hypothetical protein 1560698 3232285 CJE1657 Campylobacter jejuni RM1221 hypothetical protein YP_179638.1 1560096 R 195099 CDS YP_179639.1 57238508 3232286 complement(1560695..1560796) 1 NC_003912.7 hypothetical protein 1560796 3232286 CJE1658 Campylobacter jejuni RM1221 hypothetical protein YP_179639.1 1560695 R 195099 CDS YP_179640.1 57238509 3232287 complement(1560793..1561011) 1 NC_003912.7 hypothetical protein 1561011 3232287 CJE1659 Campylobacter jejuni RM1221 hypothetical protein YP_179640.1 1560793 R 195099 CDS YP_179641.1 57238510 3232288 complement(1561011..1561874) 1 NC_003912.7 identified by match to protein family HMM PF00034; match to protein family HMM TIGR00782; cytochrome C oxidase, cbb3-type, subunit III 1561874 ccoP 3232288 ccoP Campylobacter jejuni RM1221 cytochrome C oxidase, cbb3-type, subunit III YP_179641.1 1561011 R 195099 CDS YP_179642.1 57238511 3232289 complement(1561874..1562140) 1 NC_003912.7 cytochrome C oxidase, cbb3-type, subunit IV 1562140 ccoQ 3232289 ccoQ Campylobacter jejuni RM1221 cytochrome C oxidase, cbb3-type, subunit IV YP_179642.1 1561874 R 195099 CDS YP_179643.1 57238512 3232290 complement(1562142..1562807) 1 NC_003912.7 CcoO; FixO; cbb3-type cytochrome C oxidase subunit II 1562807 ccoO 3232290 ccoO Campylobacter jejuni RM1221 cbb3-type cytochrome C oxidase subunit II YP_179643.1 1562142 R 195099 CDS YP_179644.1 57238513 3232291 complement(1562820..1564286) 1 NC_003912.7 CcoN; FixN; cbb3-type cytochrome C oxidase subunit I 1564286 ccoN 3232291 ccoN Campylobacter jejuni RM1221 cbb3-type cytochrome C oxidase subunit I YP_179644.1 1562820 R 195099 CDS YP_179645.1 57238514 3232292 complement(1564412..1565092) 1 NC_003912.7 identified by similarity to GP:29894058; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1565092 3232292 CJE1664 Campylobacter jejuni RM1221 DNA-binding response regulator YP_179645.1 1564412 R 195099 CDS YP_179646.1 57238515 3232293 complement(1565095..1566306) 1 NC_003912.7 identified by similarity to OMNI:NT01MC4072; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box sensor histidine kinase 1566306 3232293 CJE1665 Campylobacter jejuni RM1221 sensory box sensor histidine kinase YP_179646.1 1565095 R 195099 CDS YP_179647.1 57238516 3232294 complement(1566303..1566962) 1 NC_003912.7 identified by similarity to OMNI:HP0861; hypothetical protein 1566962 3232294 CJE1666 Campylobacter jejuni RM1221 hypothetical protein YP_179647.1 1566303 R 195099 CDS YP_179648.1 57238517 3232295 complement(1566959..1568077) 1 NC_003912.7 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1568077 carA 3232295 carA Campylobacter jejuni RM1221 carbamoyl phosphate synthase small subunit YP_179648.1 1566959 R 195099 CDS YP_179649.1 57238518 3232296 complement(1568077..1568628) 1 NC_003912.7 identified by similarity to OMNI:HP1236; match to protein family HMM PF04368; hypothetical protein 1568628 3232296 CJE1668 Campylobacter jejuni RM1221 hypothetical protein YP_179649.1 1568077 R 195099 CDS YP_179650.1 57238519 3232297 complement(1568721..1569239) 1 NC_003912.7 identified by similarity to OMNI:NTL01TT1342; hypothetical protein 1569239 3232297 CJE1669 Campylobacter jejuni RM1221 hypothetical protein YP_179650.1 1568721 R 195099 CDS YP_179651.1 57238520 3232298 complement(1569232..1569660) 1 NC_003912.7 hypothetical protein 1569660 3232298 CJE1670 Campylobacter jejuni RM1221 hypothetical protein YP_179651.1 1569232 R 195099 CDS YP_179652.1 57238521 3232299 complement(1569657..1570907) 1 NC_003912.7 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 1570907 purA 3232299 purA Campylobacter jejuni RM1221 adenylosuccinate synthetase YP_179652.1 1569657 R 195099 CDS YP_179653.1 57238522 3232300 1571036..1571134 1 NC_003912.7 hypothetical protein 1571134 3232300 CJE1672 Campylobacter jejuni RM1221 hypothetical protein YP_179653.1 1571036 D 195099 CDS YP_179654.1 57238523 3232301 1571172..1572380 1 NC_003912.7 identified by similarity to SP:P31064; match to protein family HMM PF04143; inner membrane protein 1572380 3232301 CJE1673 Campylobacter jejuni RM1221 inner membrane protein YP_179654.1 1571172 D 195099 CDS YP_179655.1 57238524 3232302 1572384..1572611 1 NC_003912.7 identified by similarity to OMNI:SO0109; match to protein family HMM PF01206; hypothetical protein 1572611 3232302 CJE1674 Campylobacter jejuni RM1221 hypothetical protein YP_179655.1 1572384 D 195099 CDS YP_179656.1 57238525 3232303 complement(1572627..1574096) 1 NC_003912.7 identified by similarity to SP:P07117; match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium/proline permease 1574096 putP 3232303 putP Campylobacter jejuni RM1221 sodium/proline permease YP_179656.1 1572627 R 195099 CDS YP_179657.1 57238526 3232304 complement(1574114..1577602) 1 NC_003912.7 identified by similarity to SP:P09546; match to protein family HMM PF00171; match to protein family HMM PF01619; bifunctional putA protein 1577602 3232304 CJE1676 Campylobacter jejuni RM1221 bifunctional putA protein YP_179657.1 1574114 R 195099 CDS YP_179658.1 57238527 3232305 complement(1577733..1578755) 1 NC_003912.7 Selenoprotein. identified by similarity to SP:P16456; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase 1578755 selD 3232305 selD Campylobacter jejuni RM1221 selenide, water dikinase YP_179658.1 1577733 R 195099 CDS YP_179659.1 57238528 3232306 complement(1578765..1579337) 1 NC_003912.7 identified by similarity to OMNI:NTL01TT1750; match to protein family HMM PF01206; hypothetical protein 1579337 3232306 CJE1678 Campylobacter jejuni RM1221 hypothetical protein YP_179659.1 1578765 R 195099 CDS YP_179660.1 57238529 3232307 complement(1579448..1581550) 1 NC_003912.7 identified by similarity to SP:P42258; match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1581550 3232307 CJE1679 Campylobacter jejuni RM1221 methyl-accepting chemotaxis protein YP_179660.1 1579448 R 195099 CDS YP_179661.1 57238530 3232308 complement(1581663..1582400) 1 NC_003912.7 identified by match to protein family HMM PF02573; molybdate transport repressor 1582400 3232308 CJE1680 Campylobacter jejuni RM1221 molybdate transport repressor YP_179661.1 1581663 R 195099 CDS YP_179662.1 57238531 3232309 complement(1582393..1583175) 1 NC_003912.7 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 1583175 fdhD 3232309 fdhD Campylobacter jejuni RM1221 formate dehydrogenase accessory protein YP_179662.1 1582393 R 195099 CDS YP_179663.1 57238532 3232310 complement(1583342..1584274) 1 NC_003912.7 identified by similarity to GP:48509; match to protein family HMM TIGR01583; formate dehydrogenase, cytochrome b subunit 1584274 fdhC 3232310 fdhC Campylobacter jejuni RM1221 formate dehydrogenase, cytochrome b subunit YP_179663.1 1583342 R 195099 CDS YP_179664.1 57238533 3232311 complement(1584271..1584912) 1 NC_003912.7 identified by similarity to SP:P27273; match to protein family HMM PF00037; formate dehydrogenase, iron-sulfur subunit 1584912 fdhB 3232311 fdhB Campylobacter jejuni RM1221 formate dehydrogenase, iron-sulfur subunit YP_179664.1 1584271 R 195099 CDS YP_179665.1 57238534 3232312 complement(1584909..1587713) 1 NC_003912.7 Selenoprotein. identified by similarity to GP:48507; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; formate dehydrogenase, alpha subunit, selenocysteine-containing 1587713 fdhA 3232312 fdhA Campylobacter jejuni RM1221 formate dehydrogenase, alpha subunit, selenocysteine-containing YP_179665.1 1584909 R 195099 CDS YP_179666.1 57238535 3232313 complement(1587713..1587904) 1 NC_003912.7 identified by match to protein family HMM TIGR01409; Tat pathway signal sequence domain-containing protein 1587904 3232313 CJE1685 Campylobacter jejuni RM1221 Tat pathway signal sequence domain-containing protein YP_179666.1 1587713 R 195099 CDS YP_179667.1 57238536 3232314 complement(1587879..1588580) 1 NC_003912.7 hypothetical protein 1588580 3232314 CJE1686 Campylobacter jejuni RM1221 hypothetical protein YP_179667.1 1587879 R 195099 CDS YP_179668.1 57238537 3232315 complement(1588748..1588861) 1 NC_003912.7 hypothetical protein 1588861 3232315 CJE1687 Campylobacter jejuni RM1221 hypothetical protein YP_179668.1 1588748 R 195099 CDS YP_179669.1 57238538 3232316 complement(1588897..1590045) 1 NC_003912.7 identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047; carboxynorspermidine decarboxylase 1590045 nspC 3232316 nspC Campylobacter jejuni RM1221 carboxynorspermidine decarboxylase YP_179669.1 1588897 R 195099 CDS YP_179670.1 57238539 3232317 1590169..1591710 1 NC_003912.7 identified by match to protein family HMM PF00394; match to protein family HMM TIGR01409; oxidoreductase 1591710 3232317 CJE1689 Campylobacter jejuni RM1221 oxidoreductase YP_179670.1 1590169 D 195099 CDS YP_179671.1 57238540 3232318 1591712..1591933 1 NC_003912.7 identified by match to protein family HMM PF02597; thiS family protein 1591933 3232318 CJE1690 Campylobacter jejuni RM1221 thiS family protein YP_179671.1 1591712 D 195099 CDS YP_179672.1 57238541 3232319 1591934..1592377 1 NC_003912.7 identified by match to protein family HMM PF02391; molybdopterin converting factor, subunit 2 1592377 3232319 CJE1691 Campylobacter jejuni RM1221 molybdopterin converting factor, subunit 2 YP_179672.1 1591934 D 195099 CDS YP_179673.1 57238542 3232320 1592374..1592790 1 NC_003912.7 identified by similarity to OMNI:NTL01LI2517; hypothetical protein 1592790 3232320 CJE1692 Campylobacter jejuni RM1221 hypothetical protein YP_179673.1 1592374 D 195099 CDS YP_179674.1 57238543 3232321 1592793..1593983 1 NC_003912.7 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis MoeA protein 1593983 3232321 CJE1693 Campylobacter jejuni RM1221 molybdopterin biosynthesis MoeA protein YP_179674.1 1592793 D 195099 CDS YP_179675.1 57238544 3232322 complement(1594481..1594912) 1 NC_003912.7 identified by match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein 1594912 cas2 3232322 cas2 Campylobacter jejuni RM1221 CRISPR-associated Cas2 family protein YP_179675.1 1594481 R 195099 CDS YP_179676.1 57238545 3232323 complement(1594905..1595795) 1 NC_003912.7 identified by match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein 1595795 cas1 3232323 cas1 Campylobacter jejuni RM1221 CRISPR-associated Cas1 family protein YP_179676.1 1594905 R 195099 CDS YP_179677.1 57238546 3232325 1598988..1599164 1 NC_003912.7 hypothetical protein 1599164 3232325 CJE1698 Campylobacter jejuni RM1221 hypothetical protein YP_179677.1 1598988 D 195099 CDS YP_179678.1 57238547 3232327 complement(1600373..1601362) 1 NC_003912.7 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1601362 purM 3232327 purM Campylobacter jejuni RM1221 phosphoribosylaminoimidazole synthetase YP_179678.1 1600373 R 195099 CDS YP_179679.1 57238548 3232328 1601423..1602028 1 NC_003912.7 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1602028 coaE 3232328 coaE Campylobacter jejuni RM1221 dephospho-CoA kinase YP_179679.1 1601423 D 195099 CDS YP_179680.1 57238549 3232329 1602025..1602774 1 NC_003912.7 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1602774 dapF 3232329 dapF Campylobacter jejuni RM1221 diaminopimelate epimerase YP_179680.1 1602025 D 195099 CDS YP_179681.1 57238550 3232330 1602749..1603480 1 NC_003912.7 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 1603480 3232330 CJE1703 Campylobacter jejuni RM1221 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase YP_179681.1 1602749 D 195099 CDS YP_179682.1 57238551 3232331 complement(1603477..1604514) 1 NC_003912.7 identified by similarity to OMNI:NTL01HP01233; hypothetical protein 1604514 3232331 CJE1704 Campylobacter jejuni RM1221 hypothetical protein YP_179682.1 1603477 R 195099 CDS YP_179683.1 57238552 3232332 complement(1604579..1605028) 1 NC_003912.7 identified by match to protein family HMM PF00210; bacterioferritin 1605028 3232332 CJE1705 Campylobacter jejuni RM1221 bacterioferritin YP_179683.1 1604579 R 195099 CDS YP_179684.1 57238553 3232333 complement(1605155..1606375) 1 NC_003912.7 catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate isomerase 1606375 pgi 3232333 pgi Campylobacter jejuni RM1221 glucose-6-phosphate isomerase YP_179684.1 1605155 R 195099 CDS YP_179685.1 57238554 3232334 complement(1606369..1607193) 1 NC_003912.7 identified by similarity to GP:1628575; match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 1607193 galU 3232334 galU Campylobacter jejuni RM1221 UTP-glucose-1-phosphate uridylyltransferase YP_179685.1 1606369 R 195099 CDS YP_179686.1 57238555 3232335 complement(1607275..1609248) 1 NC_003912.7 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 1609248 acs 3232335 acs Campylobacter jejuni RM1221 acetyl-CoA synthetase YP_179686.1 1607275 R 195099 CDS YP_179687.1 57238556 3232336 complement(1609387..1610382) 1 NC_003912.7 identified by similarity to GP:14330290; match to protein family HMM PF00005; tungsten ABC transporter ATP-binding protein 1610382 3232336 CJE1709 Campylobacter jejuni RM1221 tungsten ABC transporter ATP-binding protein YP_179687.1 1609387 R 195099 CDS YP_179688.1 57238557 3232337 complement(1610384..1611070) 1 NC_003912.7 identified by similarity to GP:14330289; match to protein family HMM PF00528; tungstate ABC transporter permease 1611070 3232337 CJE1710 Campylobacter jejuni RM1221 tungstate ABC transporter permease YP_179688.1 1610384 R 195099 CDS YP_179689.1 57238558 3232338 1611149..1611958 1 NC_003912.7 identified by similarity to GP:14330288; tungstate ABC transporter periplasmic tungstate-binding protein 1611958 3232338 CJE1711 Campylobacter jejuni RM1221 tungstate ABC transporter periplasmic tungstate-binding protein YP_179689.1 1611149 D 195099 CDS YP_179690.1 57238559 3232339 1612100..1612867 1 NC_003912.7 identified by match to protein family HMM PF03746; LamB/YcsF family protein 1612867 3232339 CJE1712 Campylobacter jejuni RM1221 LamB/YcsF family protein YP_179690.1 1612100 D 195099 CDS YP_179691.1 57238560 3232340 1612877..1613617 1 NC_003912.7 identified by similarity to OMNI:NTL01TT1494; match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein 1613617 3232340 CJE1713 Campylobacter jejuni RM1221 hypothetical protein YP_179691.1 1612877 D 195099 CDS YP_179692.1 57238561 3232341 1613598..1614563 1 NC_003912.7 identified by similarity to OMNI:NTL01OI2676; match to protein family HMM PF02626; match to protein family HMM TIGR00724; hypothetical protein 1614563 3232341 CJE1714 Campylobacter jejuni RM1221 hypothetical protein YP_179692.1 1613598 D 195099 CDS YP_179693.1 57238562 3232342 complement(1614560..1615456) 1 NC_003912.7 identified by similarity to OMNI:NTL02LI0514; match to protein family HMM PF00892; integral membrane protein 1615456 3232342 CJE1715 Campylobacter jejuni RM1221 integral membrane protein YP_179693.1 1614560 R 195099 CDS YP_179694.1 57238563 3232343 complement(1615489..1616067) 1 NC_003912.7 identified by match to protein family HMM PF02525; flavodoxin 1616067 3232343 CJE1716 Campylobacter jejuni RM1221 flavodoxin YP_179694.1 1615489 R 195099 CDS YP_179695.1 57238564 3232344 1616167..1616514 1 NC_003912.7 identified by match to protein family HMM PF01638; transcriptional regulator 1616514 3232344 CJE1717 Campylobacter jejuni RM1221 transcriptional regulator YP_179695.1 1616167 D 195099 CDS YP_179696.1 57238565 3232346 complement(1616954..1618030) 1 NC_003912.7 identified by match to protein family HMM PF00107; zinc-binding dehydrogenase family oxidoreductase 1618030 3232346 CJE1719 Campylobacter jejuni RM1221 zinc-binding dehydrogenase family oxidoreductase YP_179696.1 1616954 R 195099 CDS YP_179697.1 57238566 3232348 1620475..1622805 1 NC_003912.7 identified by similarity to GP:19881228; RloC protein 1622805 3232348 CJE1721 Campylobacter jejuni RM1221 RloC protein YP_179697.1 1620475 D 195099 CDS YP_179698.1 57238567 3232350 1624123..1625193 1 NC_003912.7 identified by similarity to GP:19881229; match to protein family HMM PF02661; MloA protein 1625193 3232350 CJE1723 Campylobacter jejuni RM1221 MloA protein YP_179698.1 1624123 D 195099 CDS YP_179699.1 57238568 3232351 1625194..1626678 1 NC_003912.7 identified by similarity to SP:Q47282; match to protein family HMM PF02384; match to protein family HMM PF02506; type I restriction-modification system subunit M 1626678 hsdM 3232351 hsdM Campylobacter jejuni RM1221 type I restriction-modification system subunit M YP_179699.1 1625194 D 195099 CDS YP_179700.1 57238569 3232352 complement(1626756..1627139) 1 NC_003912.7 identified by similarity to SP:P20370; match to protein family HMM PF02627; 4-carboxymuconolactone decarboxylase 1627139 3232352 CJE1725 Campylobacter jejuni RM1221 4-carboxymuconolactone decarboxylase YP_179700.1 1626756 R 195099 CDS YP_179701.1 57238570 3232353 1627119..1627286 1 NC_003912.7 hypothetical protein 1627286 3232353 CJE1726 Campylobacter jejuni RM1221 hypothetical protein YP_179701.1 1627119 D 195099 CDS YP_179702.1 57238571 3232354 complement(1627327..1627746) 1 NC_003912.7 identified by similarity to OMNI:NTL01BMA0801; hypothetical protein 1627746 3232354 CJE1727 Campylobacter jejuni RM1221 hypothetical protein YP_179702.1 1627327 R 195099 CDS YP_179703.1 57238572 3232355 complement(1627804..1628979) 1 NC_003912.7 identified by similarity to SP:P77389; transporter 1628979 3232355 CJE1728 Campylobacter jejuni RM1221 transporter YP_179703.1 1627804 R 195099 CDS YP_179704.1 57238573 3232357 1629937..1630884 1 NC_003912.7 identified by similarity to GP:27314600; match to protein family HMM PF03773; permease 1630884 3232357 CJE1730 Campylobacter jejuni RM1221 permease YP_179704.1 1629937 D 195099 CDS YP_179705.1 57238574 3232358 1630894..1631211 1 NC_003912.7 identified by similarity to SP:P15905; match to protein family HMM PF01022; arsenical resistance operon repressor 1631211 arsR 3232358 arsR Campylobacter jejuni RM1221 arsenical resistance operon repressor YP_179705.1 1630894 D 195099 CDS YP_179706.1 57238575 3232359 1631208..1631630 1 NC_003912.7 identified by similarity to SP:Q01257; match to protein family HMM PF01451; arsenate reductase 1631630 arsC 3232359 arsC Campylobacter jejuni RM1221 arsenate reductase YP_179706.1 1631208 D 195099 CDS YP_179707.1 57238576 3232360 1631624..1632667 1 NC_003912.7 identified by similarity to GP:5802942; match to protein family HMM PF01758; arsenical-resistance protein 1632667 3232360 CJE1733 Campylobacter jejuni RM1221 arsenical-resistance protein YP_179707.1 1631624 D 195099 CDS YP_179708.1 57238577 3232362 1633202..1635157 1 NC_003912.7 identified by similarity to SP:P39215; match to protein family HMM PF00015; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1635157 3232362 CJE1735 Campylobacter jejuni RM1221 methyl-accepting chemotaxis protein YP_179708.1 1633202 D 195099 CDS YP_179709.1 57238578 3232363 complement(1635200..1637566) 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01492; paralyzed flagella protein PflA 1637566 pflA 3232363 pflA Campylobacter jejuni RM1221 paralyzed flagella protein PflA YP_179709.1 1635200 R 195099 CDS YP_179710.1 57238579 3232364 complement(1637588..1638976) 1 NC_003912.7 identified by similarity to SP:P33608; match to protein family HMM PF00361; NADH-quinone oxidoreductase, N subunit 1638976 nuoN 3232364 nuoN Campylobacter jejuni RM1221 NADH-quinone oxidoreductase, N subunit YP_179710.1 1637588 R 195099 CDS YP_179711.1 57238580 3232365 complement(1638966..1640453) 1 NC_003912.7 identified by similarity to SP:P50974; match to protein family HMM PF00361; NADH-quinone oxidoreductase, M subunit 1640453 nuoM 3232365 nuoM Campylobacter jejuni RM1221 NADH-quinone oxidoreductase, M subunit YP_179711.1 1638966 R 195099 CDS YP_179712.1 57238581 3232366 complement(1640455..1642245) 1 NC_003912.7 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1642245 nuoL 3232366 nuoL Campylobacter jejuni RM1221 NADH dehydrogenase subunit L YP_179712.1 1640455 R 195099 CDS YP_179713.1 57238582 3232367 complement(1642247..1642543) 1 NC_003912.7 identified by similarity to SP:P50940; match to protein family HMM PF00420; NADH-quinone oxidoreductase, K subunit 1642543 nuoK 3232367 nuoK Campylobacter jejuni RM1221 NADH-quinone oxidoreductase, K subunit YP_179713.1 1642247 R 195099 CDS YP_179714.1 57238583 3232368 complement(1642540..1643058) 1 NC_003912.7 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 1643058 nuoJ 3232368 nuoJ Campylobacter jejuni RM1221 NADH dehydrogenase subunit J YP_179714.1 1642540 R 195099 CDS YP_179715.1 57238584 3232369 complement(1643055..1643696) 1 NC_003912.7 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1643696 nuoI 3232369 nuoI Campylobacter jejuni RM1221 NADH dehydrogenase subunit I YP_179715.1 1643055 R 195099 CDS YP_179716.1 57238585 3232370 complement(1643706..1644704) 1 NC_003912.7 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1644704 nuoH 3232370 nuoH Campylobacter jejuni RM1221 NADH dehydrogenase subunit H YP_179716.1 1643706 R 195099 CDS YP_179717.1 57238586 3232371 complement(1644697..1647159) 1 NC_003912.7 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 1647159 nuoG 3232371 nuoG Campylobacter jejuni RM1221 NADH dehydrogenase subunit G YP_179717.1 1644697 R 195099 CDS YP_179718.1 57238587 3232372 complement(1647156..1647848) 1 NC_003912.7 hypothetical protein 1647848 3232372 CJE1745 Campylobacter jejuni RM1221 hypothetical protein YP_179718.1 1647156 R 195099 CDS YP_179719.1 57238588 3232373 complement(1647845..1648072) 1 NC_003912.7 identified by similarity to OMNI:HP1264; hypothetical protein 1648072 3232373 CJE1746 Campylobacter jejuni RM1221 hypothetical protein YP_179719.1 1647845 R 195099 CDS YP_179720.1 57238589 3232374 complement(1648069..1649295) 1 NC_003912.7 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1649295 nuoD 3232374 nuoD Campylobacter jejuni RM1221 NADH dehydrogenase subunit D YP_179720.1 1648069 R 195099 CDS YP_179721.1 57238590 3232375 complement(1649297..1650088) 1 NC_003912.7 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit C 1650088 nuoC 3232375 nuoC Campylobacter jejuni RM1221 NADH dehydrogenase subunit C YP_179721.1 1649297 R 195099 CDS YP_179722.1 57238591 3232376 complement(1650088..1650591) 1 NC_003912.7 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1650591 nuoB 3232376 nuoB Campylobacter jejuni RM1221 NADH dehydrogenase subunit B YP_179722.1 1650088 R 195099 CDS YP_179723.1 57238592 3232377 complement(1650573..1650962) 1 NC_003912.7 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit A 1650962 nuoA 3232377 nuoA Campylobacter jejuni RM1221 NADH dehydrogenase subunit A YP_179723.1 1650573 R 195099 CDS YP_179724.1 57238593 3232378 complement(1651075..1651740) 1 NC_003912.7 identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 1651740 3232378 CJE1751 Campylobacter jejuni RM1221 peptide ABC transporter ATP-binding protein YP_179724.1 1651075 R 195099 CDS YP_179725.1 57238594 3232379 complement(1651733..1652443) 1 NC_003912.7 identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 1652443 3232379 CJE1752 Campylobacter jejuni RM1221 peptide ABC transporter ATP-binding protein YP_179725.1 1651733 R 195099 CDS YP_179726.1 57238595 3232380 complement(1652440..1653228) 1 NC_003912.7 identified by match to protein family HMM PF00528; peptide ABC transporter permease 1653228 3232380 CJE1753 Campylobacter jejuni RM1221 peptide ABC transporter permease YP_179726.1 1652440 R 195099 CDS YP_179727.1 57238596 3232381 complement(1653221..1654165) 1 NC_003912.7 identified by match to protein family HMM PF00528; peptide ABC transporter permease 1654165 3232381 CJE1754 Campylobacter jejuni RM1221 peptide ABC transporter permease YP_179727.1 1653221 R 195099 CDS YP_179728.1 57238597 3232382 complement(1654165..1655700) 1 NC_003912.7 identified by similarity to SP:P42061; match to protein family HMM PF00496; peptide ABC transporter substrate-binding protein 1655700 3232382 CJE1755 Campylobacter jejuni RM1221 peptide ABC transporter substrate-binding protein YP_179728.1 1654165 R 195099 CDS YP_179729.1 57238598 3232383 complement(1655809..1658580) 1 NC_003912.7 identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913; oxidoreductase, FAD-binding, iron-sulfur cluster-binding 1658580 3232383 CJE1756 Campylobacter jejuni RM1221 oxidoreductase, FAD-binding, iron-sulfur cluster-binding YP_179729.1 1655809 R 195099 CDS YP_179730.1 57238599 3232384 1658732..1659154 1 NC_003912.7 identified by similarity to SP:P49852; match to protein family HMM PF00042; flavohemoprotein, truncation 1659154 3232384 CJE1757 Campylobacter jejuni RM1221 flavohemoprotein, truncation YP_179730.1 1658732 D 195099 CDS YP_179731.1 57238600 3232385 complement(1659174..1660805) 1 NC_003912.7 efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane component/ATP-binding component 1660805 3232385 CJE1758 Campylobacter jejuni RM1221 multidrug transporter membrane component/ATP-binding component YP_179731.1 1659174 R 195099 CDS YP_179732.1 57238601 3232387 1662239..1662583 1 NC_003912.7 identified by similarity to GP:26986249; hypothetical protein 1662583 3232387 CJE1760 Campylobacter jejuni RM1221 hypothetical protein YP_179732.1 1662239 D 195099 CDS YP_179733.1 57238602 3232388 1662616..1663035 1 NC_003912.7 identified by similarity to GP:27902224; metallo-beta-lactamase 1663035 3232388 CJE1761 Campylobacter jejuni RM1221 metallo-beta-lactamase YP_179733.1 1662616 D 195099 CDS YP_179734.1 57238603 3232389 1663123..1663341 1 NC_003912.7 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1663341 infA 3232389 infA Campylobacter jejuni RM1221 translation initiation factor IF-1 YP_179734.1 1663123 D 195099 CDS YP_179735.1 57238604 3232390 1663513..1663626 1 NC_003912.7 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 1663626 rpmJ 3232390 rpmJ Campylobacter jejuni RM1221 50S ribosomal protein L36 YP_179735.1 1663513 D 195099 CDS YP_179736.1 57238605 3232391 1663629..1663994 1 NC_003912.7 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1663994 rpsM 3232391 rpsM Campylobacter jejuni RM1221 30S ribosomal protein S13 YP_179736.1 1663629 D 195099 CDS YP_179737.1 57238606 3232392 1664004..1664396 1 NC_003912.7 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1664396 rpsK 3232392 rpsK Campylobacter jejuni RM1221 30S ribosomal protein S11 YP_179737.1 1664004 D 195099 CDS YP_179738.1 57238607 3232393 1664424..1665050 1 NC_003912.7 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1665050 rpsD 3232393 rpsD Campylobacter jejuni RM1221 30S ribosomal protein S4 YP_179738.1 1664424 D 195099 CDS YP_179739.1 57238608 3232394 1665063..1666076 1 NC_003912.7 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1666076 rpoA 3232394 rpoA Campylobacter jejuni RM1221 DNA-directed RNA polymerase subunit alpha YP_179739.1 1665063 D 195099 CDS YP_179740.1 57238609 3232395 1666080..1666433 1 NC_003912.7 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1666433 rplQ 3232395 rplQ Campylobacter jejuni RM1221 50S ribosomal protein L17 YP_179740.1 1666080 D 195099 CDS YP_179741.1 57238610 3232396 1666606..1667505 1 NC_003912.7 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 1667505 hisG 3232396 hisG Campylobacter jejuni RM1221 ATP phosphoribosyltransferase YP_179741.1 1666606 D 195099 CDS YP_179742.1 57238611 3232397 1667513..1668799 1 NC_003912.7 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1668799 hisD 3232397 hisD Campylobacter jejuni RM1221 histidinol dehydrogenase YP_179742.1 1667513 D 195099 CDS YP_179743.1 57238612 3232398 1668796..1669854 1 NC_003912.7 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 1669854 hisB 3232398 hisB Campylobacter jejuni RM1221 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_179743.1 1668796 D 195099 CDS YP_179744.1 57238613 3232399 1669851..1670438 1 NC_003912.7 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1670438 hisH 3232399 hisH Campylobacter jejuni RM1221 imidazole glycerol phosphate synthase subunit HisH YP_179744.1 1669851 D 195099 CDS YP_179745.1 57238614 3232400 1670435..1671166 1 NC_003912.7 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1671166 hisA 3232400 hisA Campylobacter jejuni RM1221 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_179745.1 1670435 D 195099 CDS YP_179746.1 57238615 3232401 1671151..1672089 1 NC_003912.7 identified by similarity to GP:28076667; match to protein family HMM PF04373; HrgA protein 1672089 3232401 CJE1774 Campylobacter jejuni RM1221 HrgA protein YP_179746.1 1671151 D 195099 CDS YP_179747.1 57238616 3232402 1672090..1672857 1 NC_003912.7 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1672857 hisF-2 3232402 hisF-2 Campylobacter jejuni RM1221 imidazole glycerol phosphate synthase subunit HisF YP_179747.1 1672090 D 195099 CDS YP_179748.1 57238617 3232403 1672859..1673482 1 NC_003912.7 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 1673482 hisI 3232403 hisI Campylobacter jejuni RM1221 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_179748.1 1672859 D 195099 CDS YP_179749.1 57238618 3232404 complement(1673507..1674667) 1 NC_003912.7 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 1674667 3232404 CJE1777 Campylobacter jejuni RM1221 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase YP_179749.1 1673507 R 195099 CDS YP_179750.1 57238619 3232405 complement(1674693..1675799) 1 NC_003912.7 identified by similarity to SP:P21590; match to protein family HMM PF01883; ATP/GTP-binding protein 1675799 mrp 3232405 mrp Campylobacter jejuni RM1221 ATP/GTP-binding protein YP_179750.1 1674693 R 195099 CDS YP_179751.1 57238620 3232406 1675922..1677037 1 NC_003912.7 bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 1677037 ispDF 3232406 ispDF Campylobacter jejuni RM1221 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein YP_179751.1 1675922 D 195099 CDS YP_179752.1 57238621 3232407 1677034..1677921 1 NC_003912.7 identified by similarity to OMNI:HP1021; match to protein family HMM PF00072; match to protein family HMM TIGR01199; DNA-binding response regulator 1677921 3232407 CJE1780 Campylobacter jejuni RM1221 DNA-binding response regulator YP_179752.1 1677034 D 195099 CDS YP_179753.1 57238622 3232408 1677899..1679059 1 NC_003912.7 ATP-sulfurylase 1679059 3232408 CJE1781 Campylobacter jejuni RM1221 ATP-sulfurylase YP_179753.1 1677899 D 195099 CDS YP_179754.1 57238623 3232409 1679064..1679564 1 NC_003912.7 identified by similarity to SP:P18200; match to protein family HMM PF04608; phosphatidylglycerophosphatase A 1679564 pgpA 3232409 pgpA Campylobacter jejuni RM1221 phosphatidylglycerophosphatase A YP_179754.1 1679064 D 195099 CDS YP_179755.1 57238624 3232410 1679643..1679906 1 NC_003912.7 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1679906 rpsT 3232410 rpsT Campylobacter jejuni RM1221 30S ribosomal protein S20 YP_179755.1 1679643 D 195099 CDS YP_179756.1 57238625 3232411 1679925..1680992 1 NC_003912.7 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1680992 prfA 3232411 prfA Campylobacter jejuni RM1221 peptide chain release factor 1 YP_179756.1 1679925 D 195099 CDS YP_179757.1 57238626 3232412 complement(1681006..1681761) 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01539; match to protein family HMM PF03774; hypothetical protein 1681761 3232412 CJE1785 Campylobacter jejuni RM1221 hypothetical protein YP_179757.1 1681006 R 195099 CDS YP_179758.1 57238627 3232413 1681954..1684110 1 NC_003912.7 identified by similarity to OMNI:NTL01CJ01540; match to protein family HMM PF00593; TonB-dependent heme receptor 1684110 chuA 3232413 chuA Campylobacter jejuni RM1221 TonB-dependent heme receptor YP_179758.1 1681954 D 195099 CDS YP_179759.1 57238628 3232414 1684085..1685071 1 NC_003912.7 identified by similarity to SP:Q56992; match to protein family HMM PF01032; hemin ABC transporter permease 1685071 3232414 CJE1787 Campylobacter jejuni RM1221 hemin ABC transporter permease YP_179759.1 1684085 D 195099 CDS YP_179760.1 57238629 3232415 1685071..1685847 1 NC_003912.7 identified by match to protein family HMM PF00005; hemin ABC transporter ATP-binding protein 1685847 3232415 CJE1788 Campylobacter jejuni RM1221 hemin ABC transporter ATP-binding protein YP_179760.1 1685071 D 195099 CDS YP_179761.1 57238630 3232416 1685844..1686650 1 NC_003912.7 identified by match to protein family HMM PF01497; hemin ABC transporter periplasmic hemin-binding protein 1686650 3232416 CJE1789 Campylobacter jejuni RM1221 hemin ABC transporter periplasmic hemin-binding protein YP_179761.1 1685844 D 195099 CDS YP_179762.1 57238631 3232418 1687671..1688930 1 NC_003912.7 identified by similarity to SP:P17448; match to protein family HMM PF00083; alpha-ketoglutarate permease 1688930 kgtP 3232418 kgtP Campylobacter jejuni RM1221 alpha-ketoglutarate permease YP_179762.1 1687671 D 195099 CDS YP_179763.1 57238632 3232419 complement(1688916..1689935) 1 NC_003912.7 identified by similarity to SP:P17802; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase 1689935 mutY 3232419 mutY Campylobacter jejuni RM1221 A/G-specific adenine glycosylase YP_179763.1 1688916 R 195099 CDS YP_179764.1 57238633 3232420 1690008..1690760 1 NC_003912.7 identified by similarity to GB:AAP76658.1; hypothetical protein 1690760 3232420 CJE1793 Campylobacter jejuni RM1221 hypothetical protein YP_179764.1 1690008 D 195099 CDS YP_179765.1 57238634 3232421 1691440..1692420 1 NC_003912.7 identified by similarity to GB:CAB71026.1; match to protein family HMM PF00383; riboflavin biosynthesis protein RibD 1692420 3232421 CJE1794 Campylobacter jejuni RM1221 riboflavin biosynthesis protein RibD YP_179765.1 1691440 D 195099 CDS YP_179766.1 57238635 3232422 1692401..1692922 1 NC_003912.7 hypothetical protein 1692922 3232422 CJE1795 Campylobacter jejuni RM1221 hypothetical protein YP_179766.1 1692401 D 195099 CDS YP_179767.1 57238636 3232423 complement(1692930..1694294) 1 NC_003912.7 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 1694294 sdaA 3232423 sdaA Campylobacter jejuni RM1221 L-serine ammonia-lyase YP_179767.1 1692930 R 195099 CDS YP_179768.1 57238637 3232424 complement(1694309..1695559) 1 NC_003912.7 identified by similarity to SP:P36559; serine transporter 1695559 sdaC 3232424 sdaC Campylobacter jejuni RM1221 serine transporter YP_179768.1 1694309 R 195099 CDS YP_179769.1 57238638 3232425 complement(1695818..1696234) 1 NC_003912.7 identified by similarity to GP:29338228; hypothetical protein 1696234 3232425 CJE1798 Campylobacter jejuni RM1221 hypothetical protein YP_179769.1 1695818 R 195099 CDS YP_179770.1 57238639 3232426 complement(1696300..1697043) 1 NC_003912.7 identified by similarity to OMNI:NTL01FN0259; hypothetical protein 1697043 3232426 CJE1799 Campylobacter jejuni RM1221 hypothetical protein YP_179770.1 1696300 R 195099 CDS YP_179771.1 57238640 3232427 1697202..1697627 1 NC_003912.7 identified by similarity to SP:P43008; match to protein family HMM PF01618; TonB system transport protein ExbB 1697627 exbB-2 3232427 exbB-2 Campylobacter jejuni RM1221 TonB system transport protein ExbB YP_179771.1 1697202 D 195099 CDS YP_179772.1 57238641 3232428 1697599..1698009 1 NC_003912.7 identified by similarity to SP:P43009; match to protein family HMM PF02472; biopolymer transport exbD protein 1698009 exbD 3232428 exbD Campylobacter jejuni RM1221 biopolymer transport exbD protein YP_179772.1 1697599 D 195099 CDS YP_179773.1 57238642 3232430 complement(1698701..1699579) 1 NC_003912.7 hypothetical protein 1699579 3232430 CJE1803 Campylobacter jejuni RM1221 hypothetical protein YP_179773.1 1698701 R 195099 CDS YP_179774.1 57238643 3232431 complement(1699633..1699830) 1 NC_003912.7 hypothetical protein 1699830 3232431 CJE1804 Campylobacter jejuni RM1221 hypothetical protein YP_179774.1 1699633 R 195099 CDS YP_179775.1 57238644 3232432 1699952..1700935 1 NC_003912.7 identified by similarity to PIR:A71984; hypothetical protein 1700935 3232432 CJE1805 Campylobacter jejuni RM1221 hypothetical protein YP_179775.1 1699952 D 195099 CDS YP_179776.1 57238645 3232433 complement(1701022..1702110) 1 NC_003912.7 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1702110 aroC 3232433 aroC Campylobacter jejuni RM1221 chorismate synthase YP_179776.1 1701022 R 195099 CDS YP_179777.1 57238646 3232434 complement(1702110..1702784) 1 NC_003912.7 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1702784 rnc 3232434 rnc Campylobacter jejuni RM1221 ribonuclease III YP_179777.1 1702110 R 195099 CDS YP_179778.1 57238647 3232435 complement(1702771..1703211) 1 NC_003912.7 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1703211 rnhA 3232435 rnhA Campylobacter jejuni RM1221 ribonuclease H YP_179778.1 1702771 R 195099 CDS YP_179779.1 57238648 3232436 complement(1703198..1704184) 1 NC_003912.7 identified by similarity to OMNI:HP0660; hypothetical protein 1704184 3232436 CJE1809 Campylobacter jejuni RM1221 hypothetical protein YP_179779.1 1703198 R 195099 CDS YP_179780.1 57238649 3232437 1704254..1706071 1 NC_003912.7 synthesizes RNA primers at the replication forks; DNA primase 1706071 dnaG 3232437 dnaG Campylobacter jejuni RM1221 DNA primase YP_179780.1 1704254 D 195099 CDS YP_179781.1 57238650 3232438 1706153..1706425 1 NC_003912.7 identified by match to protein family HMM PF01106; NifU family protein 1706425 3232438 CJE1811 Campylobacter jejuni RM1221 NifU family protein YP_179781.1 1706153 D 195099 CDS YP_179782.1 57238651 3232439 1706412..1706963 1 NC_003912.7 identified by similarity to OMNI:HP1493; hypothetical protein 1706963 3232439 CJE1812 Campylobacter jejuni RM1221 hypothetical protein YP_179782.1 1706412 D 195099 CDS YP_179783.1 57238652 3232440 1706947..1708230 1 NC_003912.7 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1708230 murE 3232440 murE Campylobacter jejuni RM1221 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_179783.1 1706947 D 195099 CDS YP_179784.1 57238653 3232441 1708234..1708545 1 NC_003912.7 identified by similarity to SP:O34247; match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 1708545 3232441 CJE1814 Campylobacter jejuni RM1221 hypothetical protein YP_179784.1 1708234 D 195099 CDS YP_179785.1 57238654 3232442 1708542..1709636 1 NC_003912.7 identified by match to protein family HMM PF00595; PDZ domain-containing protein 1709636 3232442 CJE1815 Campylobacter jejuni RM1221 PDZ domain-containing protein YP_179785.1 1708542 D 195099 CDS YP_179786.1 57238655 3232443 1709633..1710478 1 NC_003912.7 identified by similarity to SP:O66126; match to protein family HMM PF00348; geranyltranstransferase 1710478 ispA 3232443 ispA Campylobacter jejuni RM1221 geranyltranstransferase YP_179786.1 1709633 D 195099 CDS YP_179787.1 57238656 3232444 1710488..1712386 1 NC_003912.7 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1712386 tkt 3232444 tkt Campylobacter jejuni RM1221 transketolase YP_179787.1 1710488 D 195099 CDS YP_179788.1 57238657 3232445 1712388..1713497 1 NC_003912.7 identified by similarity to GP:28974221; match to protein family HMM PF02405; match to protein family HMM TIGR00056; ABC transporter permease 1713497 3232445 CJE1818 Campylobacter jejuni RM1221 ABC transporter permease YP_179788.1 1712388 D 195099 CDS YP_179789.1 57238658 3232446 1713498..1714220 1 NC_003912.7 identified by similarity to OMNI:BR1020; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1714220 3232446 CJE1819 Campylobacter jejuni RM1221 ABC transporter ATP-binding protein YP_179789.1 1713498 D 195099 CDS YP_179790.1 57238659 3232447 1714223..1715113 1 NC_003912.7 identified by similarity to GP:28974223; match to protein family HMM PF02470; ABC transporter periplasmic substrate-binding protein 1715113 3232447 CJE1820 Campylobacter jejuni RM1221 ABC transporter periplasmic substrate-binding protein YP_179790.1 1714223 D 195099 CDS YP_179791.1 57238660 3232448 1715113..1715712 1 NC_003912.7 identified by similarity to SP:P29285; lipoprotein 1715712 3232448 CJE1821 Campylobacter jejuni RM1221 lipoprotein YP_179791.1 1715113 D 195099 CDS YP_179792.1 57238661 3232449 1715768..1716268 1 NC_003912.7 identified by similarity to OMNI:NTL01HP00346; hypothetical protein 1716268 3232449 CJE1822 Campylobacter jejuni RM1221 hypothetical protein YP_179792.1 1715768 D 195099 CDS YP_179793.1 57238662 3232450 complement(1716639..1717397) 1 NC_003912.7 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1717397 map 3232450 map Campylobacter jejuni RM1221 methionine aminopeptidase YP_179793.1 1716639 R 195099 CDS YP_179794.1 57238663 3232451 complement(1717407..1718150) 1 NC_003912.7 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1718150 murI 3232451 murI Campylobacter jejuni RM1221 glutamate racemase YP_179794.1 1717407 R 195099 CDS YP_179795.1 57238664 3232452 complement(1718152..1718610) 1 NC_003912.7 identified by similarity to SP:P23898; match to protein family HMM PF00877; lipoprotein NlpC 1718610 nlpC 3232452 nlpC Campylobacter jejuni RM1221 lipoprotein NlpC YP_179795.1 1718152 R 195099 CDS YP_179796.1 57238665 3232453 complement(1718619..1719788) 1 NC_003912.7 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1719788 nhaA 3232453 nhaA Campylobacter jejuni RM1221 pH-dependent sodium/proton antiporter YP_179796.1 1718619 R 195099 CDS YP_179797.1 57238666 3232454 complement(1719785..1720933) 1 NC_003912.7 identified by similarity to SP:P13738; match to protein family HMM TIGR00773; Na+/H+ antiporter NhaA 1720933 nhaA-2 3232454 nhaA-2 Campylobacter jejuni RM1221 Na+/H+ antiporter NhaA YP_179797.1 1719785 R 195099 CDS YP_179798.1 57238667 3232455 complement(1721076..1721258) 1 NC_003912.7 hypothetical protein 1721258 3232455 CJE1828 Campylobacter jejuni RM1221 hypothetical protein YP_179798.1 1721076 R 195099 CDS YP_179799.1 57238668 3232456 1721618..1721731 1 NC_003912.7 hypothetical protein 1721731 3232456 CJE1829 Campylobacter jejuni RM1221 hypothetical protein YP_179799.1 1721618 D 195099 CDS YP_179800.1 57238669 3232457 1722176..1724266 1 NC_003912.7 identified by similarity to GP:12718499; similarity to OMNI:NTL01PM0455; match to protein family HMM PF03239; FTR1 family iron permease 1724266 3232457 CJE1830 Campylobacter jejuni RM1221 FTR1 family iron permease YP_179800.1 1722176 D 195099 CDS YP_179801.1 57238670 3232458 1724263..1724802 1 NC_003912.7 identified by similarity to OMNI:NTL01PM0454; hypothetical protein 1724802 3232458 CJE1831 Campylobacter jejuni RM1221 hypothetical protein YP_179801.1 1724263 D 195099 CDS YP_179802.1 57238671 3232459 1724885..1726288 1 NC_003912.7 identified by similarity to OMNI:NTL01PM0453; match to protein family HMM PF04945; hypothetical protein 1726288 3232459 CJE1832 Campylobacter jejuni RM1221 hypothetical protein YP_179802.1 1724885 D 195099 CDS YP_179803.1 57238672 3232460 1726278..1727567 1 NC_003912.7 identified by similarity to OMNI:NTL01PM0452; match to protein family HMM PF02687; ABC transporter permease 1727567 3232460 CJE1833 Campylobacter jejuni RM1221 ABC transporter permease YP_179803.1 1726278 D 195099 CDS YP_179804.1 57238673 3232461 1727557..1728675 1 NC_003912.7 identified by similarity to OMNI:NTL01PM0451; match to protein family HMM PF02687; ABC transporter permease 1728675 3232461 CJE1834 Campylobacter jejuni RM1221 ABC transporter permease YP_179804.1 1727557 D 195099 CDS YP_179805.1 57238674 3232462 1728672..1729325 1 NC_003912.7 identified by similarity to GB:AAK02532.1; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1729325 3232462 CJE1835 Campylobacter jejuni RM1221 ABC transporter ATP-binding protein YP_179805.1 1728672 D 195099 CDS YP_179806.1 57238675 3232463 1729322..1729810 1 NC_003912.7 thiredoxin,-like protein 1729810 3232463 CJE1836 Campylobacter jejuni RM1221 thiredoxin,-like protein YP_179806.1 1729322 D 195099 CDS YP_179807.1 57238676 3232464 1729771..1730274 1 NC_003912.7 thioredoxin 1730274 3232464 CJE1837 Campylobacter jejuni RM1221 thioredoxin YP_179807.1 1729771 D 195099 CDS YP_179808.1 57238677 3232465 complement(1730284..1730721) 1 NC_003912.7 identified by similarity to OMNI:NTL01PM1941; match to protein family HMM PF04214; hypothetical protein 1730721 3232465 CJE1838 Campylobacter jejuni RM1221 hypothetical protein YP_179808.1 1730284 R 195099 CDS YP_179809.1 57238678 3232466 complement(1730812..1730955) 1 NC_003912.7 hypothetical protein 1730955 3232466 CJE1839 Campylobacter jejuni RM1221 hypothetical protein YP_179809.1 1730812 R 195099 CDS YP_179810.1 57238679 3232467 complement(1731021..1731326) 1 NC_003912.7 hypothetical protein 1731326 3232467 CJE1840 Campylobacter jejuni RM1221 hypothetical protein YP_179810.1 1731021 R 195099 CDS YP_179811.1 57238680 3232468 complement(1732089..1732937) 1 NC_003912.7 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1732937 3232468 CJE1841 Campylobacter jejuni RM1221 DNA ligase YP_179811.1 1732089 R 195099 CDS YP_179812.1 57238681 3232469 complement(1732937..1733599) 1 NC_003912.7 identified by similarity to OMNI:HP0156; hypothetical protein 1733599 3232469 CJE1842 Campylobacter jejuni RM1221 hypothetical protein YP_179812.1 1732937 R 195099 CDS YP_179813.1 57238682 3232470 complement(1733589..1733792) 1 NC_003912.7 identified by similarity to OMNI:HP0155; hypothetical protein 1733792 3232470 CJE1843 Campylobacter jejuni RM1221 hypothetical protein YP_179813.1 1733589 R 195099 CDS YP_179814.1 57238683 3232471 complement(1733858..1735102) 1 NC_003912.7 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1735102 eno 3232471 eno Campylobacter jejuni RM1221 phosphopyruvate hydratase YP_179814.1 1733858 R 195099 CDS YP_179815.1 57238684 3232472 complement(1735102..1736133) 1 NC_003912.7 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1736133 recA 3232472 recA Campylobacter jejuni RM1221 recombinase A YP_179815.1 1735102 R 195099 CDS YP_179816.1 57238685 3232473 1736239..1737099 1 NC_003912.7 identified by similarity to OMNI:NTL01AA00225; match to protein family HMM PF02642; hypothetical protein 1737099 3232473 CJE1846 Campylobacter jejuni RM1221 hypothetical protein YP_179816.1 1736239 D 195099 CDS YP_179817.1 57238686 3232474 1737111..1737380 1 NC_003912.7 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 1737380 fliQ 3232474 fliQ Campylobacter jejuni RM1221 flagellar biosynthesis protein FliQ YP_179817.1 1737111 D 195099 CDS YP_179818.1 57238687 3232475 1737377..1738153 1 NC_003912.7 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1738153 murB 3232475 murB Campylobacter jejuni RM1221 UDP-N-acetylenolpyruvoylglucosamine reductase YP_179818.1 1737377 D 195099 CDS YP_179819.1 57238688 3232476 complement(1738177..1738941) 1 NC_003912.7 hypothetical protein 1738941 3232476 CJE1849 Campylobacter jejuni RM1221 hypothetical protein YP_179819.1 1738177 R 195099 CDS YP_179820.1 57238689 3232477 complement(1738987..1739751) 1 NC_003912.7 identified by similarity to SP:P22255; match to protein family HMM PF00459; CysQ 1739751 cysQ 3232477 cysQ Campylobacter jejuni RM1221 CysQ YP_179820.1 1738987 R 195099 CDS YP_179821.1 57238690 3232478 complement(1739831..1741099) 1 NC_003912.7 identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798; citrate synthase 1741099 gltA 3232478 gltA Campylobacter jejuni RM1221 citrate synthase YP_179821.1 1739831 R 195099 CDS YP_179822.1 57238691 3232479 complement(1741214..1742389) 1 NC_003912.7 identified by match to protein family HMM PF00999; sodium/hydrogen exchanger family protein 1742389 3232479 CJE1852 Campylobacter jejuni RM1221 sodium/hydrogen exchanger family protein YP_179822.1 1741214 R 195099 CDS YP_179823.1 57238692 3232480 complement(1742370..1743206) 1 NC_003912.7 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 1743206 bioB 3232480 bioB Campylobacter jejuni RM1221 biotin synthase YP_179823.1 1742370 R 195099 CDS YP_179824.1 57238693 3232481 complement(1743208..1745310) 1 NC_003912.7 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1745310 topA 3232481 topA Campylobacter jejuni RM1221 DNA topoisomerase I YP_179824.1 1743208 R 195099 CDS YP_179825.1 57238694 3232482 1745505..1746776 1 NC_003912.7 identified by similarity to GP:4115707; match to protein family HMM PF00083; major facilitator superfamily protein 1746776 3232482 CJE1855 Campylobacter jejuni RM1221 major facilitator superfamily protein YP_179825.1 1745505 D 195099 CDS YP_179826.1 57238695 3232483 complement(1746804..1748069) 1 NC_003912.7 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1748069 secY 3232483 secY Campylobacter jejuni RM1221 preprotein translocase subunit SecY YP_179826.1 1746804 R 195099 CDS YP_179827.1 57238696 3232484 complement(1748069..1748461) 1 NC_003912.7 late assembly protein; 50S ribosomal protein L15 1748461 rplO 3232484 rplO Campylobacter jejuni RM1221 50S ribosomal protein L15 YP_179827.1 1748069 R 195099 CDS YP_179828.1 57238697 3232485 complement(1748466..1748909) 1 NC_003912.7 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1748909 rpsE 3232485 rpsE Campylobacter jejuni RM1221 30S ribosomal protein S5 YP_179828.1 1748466 R 195099 CDS YP_179829.1 57238698 3232486 complement(1748921..1749277) 1 NC_003912.7 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1749277 rplR 3232486 rplR Campylobacter jejuni RM1221 50S ribosomal protein L18 YP_179829.1 1748921 R 195099 CDS YP_179830.1 57238699 3232487 complement(1749287..1749823) 1 NC_003912.7 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1749823 rplF 3232487 rplF Campylobacter jejuni RM1221 50S ribosomal protein L6 YP_179830.1 1749287 R 195099 CDS YP_179831.1 57238700 3232488 complement(1749902..1750297) 1 NC_003912.7 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1750297 rpsH 3232488 rpsH Campylobacter jejuni RM1221 30S ribosomal protein S8 YP_179831.1 1749902 R 195099 CDS YP_179832.1 57238701 3232489 complement(1750307..1750492) 1 NC_003912.7 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 1750492 rpsN 3232489 rpsN Campylobacter jejuni RM1221 30S ribosomal protein S14 YP_179832.1 1750307 R 195099 CDS YP_179833.1 57238702 3232490 complement(1750494..1751039) 1 NC_003912.7 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1751039 rplE 3232490 rplE Campylobacter jejuni RM1221 50S ribosomal protein L5 YP_179833.1 1750494 R 195099 CDS YP_179834.1 57238703 3232491 complement(1751043..1751276) 1 NC_003912.7 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1751276 rplX 3232491 rplX Campylobacter jejuni RM1221 50S ribosomal protein L24 YP_179834.1 1751043 R 195099 CDS YP_179835.1 57238704 3232492 complement(1751276..1751644) 1 NC_003912.7 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1751644 rplN 3232492 rplN Campylobacter jejuni RM1221 50S ribosomal protein L14 YP_179835.1 1751276 R 195099 CDS YP_179836.1 57238705 3232493 complement(1751644..1751895) 1 NC_003912.7 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 1751895 rpsQ 3232493 rpsQ Campylobacter jejuni RM1221 30S ribosomal protein S17 YP_179836.1 1751644 R 195099 CDS YP_179837.1 57238706 3232494 complement(1751905..1752090) 1 NC_003912.7 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1752090 rpmC 3232494 rpmC Campylobacter jejuni RM1221 50S ribosomal protein L29 YP_179837.1 1751905 R 195099 CDS YP_179838.1 57238707 3232495 complement(1752077..1752502) 1 NC_003912.7 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1752502 rplP 3232495 rplP Campylobacter jejuni RM1221 50S ribosomal protein L16 YP_179838.1 1752077 R 195099 CDS YP_179839.1 57238708 3232496 complement(1752505..1753206) 1 NC_003912.7 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1753206 rpsC 3232496 rpsC Campylobacter jejuni RM1221 30S ribosomal protein S3 YP_179839.1 1752505 R 195099 CDS YP_179840.1 57238709 3232497 complement(1753206..1753631) 1 NC_003912.7 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1753631 rplV 3232497 rplV Campylobacter jejuni RM1221 50S ribosomal protein L22 YP_179840.1 1753206 R 195099 CDS YP_179841.1 57238710 3232498 complement(1753642..1753923) 1 NC_003912.7 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1753923 rpsS 3232498 rpsS Campylobacter jejuni RM1221 30S ribosomal protein S19 YP_179841.1 1753642 R 195099 CDS YP_179842.1 57238711 3232499 complement(1753925..1754755) 1 NC_003912.7 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1754755 rplB 3232499 rplB Campylobacter jejuni RM1221 50S ribosomal protein L2 YP_179842.1 1753925 R 195099 CDS YP_179843.1 57238712 3232500 complement(1754757..1755038) 1 NC_003912.7 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1755038 rplW 3232500 rplW Campylobacter jejuni RM1221 50S ribosomal protein L23 YP_179843.1 1754757 R 195099 CDS YP_179844.1 57238713 3232501 complement(1755041..1755655) 1 NC_003912.7 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1755655 rplD 3232501 rplD Campylobacter jejuni RM1221 50S ribosomal protein L4 YP_179844.1 1755041 R 195099 CDS YP_179845.1 57238730 3232518 complement(1755652..1756227) 1 NC_003912.7 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1756227 rplC 3232518 rplC Campylobacter jejuni RM1221 50S ribosomal protein L3 YP_179845.1 1755652 R 195099 CDS YP_179846.1 57236893 3230635 complement(1756237..1756548) 1 NC_003912.7 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1756548 rpsJ 3230635 rpsJ Campylobacter jejuni RM1221 30S ribosomal protein S10 YP_179846.1 1756237 R 195099 CDS YP_179847.1 57236894 3230636 1756607..1756708 1 NC_003912.7 hypothetical protein 1756708 3230636 CJE1877 Campylobacter jejuni RM1221 hypothetical protein YP_179847.1 1756607 D 195099 CDS YP_179848.1 57236895 3230637 complement(1756746..1757507) 1 NC_003912.7 identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridylate synthase 1757507 3230637 CJE1878 Campylobacter jejuni RM1221 RNA pseudouridylate synthase YP_179848.1 1756746 R 195099 CDS YP_179849.1 57236896 3230638 complement(1757543..1759531) 1 NC_003912.7 identified by similarity to GP:28203198; match to protein family HMM PF00753; match to protein family HMM TIGR00649; metallo-beta-lactamase 1759531 3230638 CJE1879 Campylobacter jejuni RM1221 metallo-beta-lactamase YP_179849.1 1757543 R 195099 CDS YP_179850.1 57236897 3230639 complement(1759506..1760306) 1 NC_003912.7 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1760306 ksgA 3230639 ksgA Campylobacter jejuni RM1221 dimethyladenosine transferase YP_179850.1 1759506 R 195099 CDS YP_179851.1 57236898 3230640 1760387..1760923 1 NC_003912.7 identified by similarity to OMNI:NTL01HP01407; hypothetical protein 1760923 3230640 CJE1881 Campylobacter jejuni RM1221 hypothetical protein YP_179851.1 1760387 D 195099 CDS YP_179852.1 57236899 3230641 1760947..1762017 1 NC_003912.7 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1762017 3230641 CJE1882 Campylobacter jejuni RM1221 ribosomal RNA large subunit methyltransferase N YP_179852.1 1760947 D 195099 CDS YP_179853.1 57236900 3230642 1762014..1762112 1 NC_003912.7 hypothetical protein 1762112 3230642 CJE1883 Campylobacter jejuni RM1221 hypothetical protein YP_179853.1 1762014 D 195099 CDS YP_179854.1 57236901 3230643 1762560..1763495 1 NC_003912.7 identified by similarity to SP:P39907; lipopolysaccharide core biosynthesis protien 1763495 3230643 CJE1884 Campylobacter jejuni RM1221 lipopolysaccharide core biosynthesis protien YP_179854.1 1762560 D 195099 CDS YP_179855.1 57236902 3230644 1763817..1764347 1 NC_003912.7 identified by match to protein family HMM PF00583; acetyltransferase 1764347 3230644 CJE1885 Campylobacter jejuni RM1221 acetyltransferase YP_179855.1 1763817 D 195099 CDS YP_179856.1 57236903 3230645 complement(1764327..1764929) 1 NC_003912.7 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 1764929 leuD 3230645 leuD Campylobacter jejuni RM1221 isopropylmalate isomerase small subunit YP_179856.1 1764327 R 195099 CDS YP_179857.1 57236904 3230646 complement(1764931..1766337) 1 NC_003912.7 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1766337 leuC 3230646 leuC Campylobacter jejuni RM1221 isopropylmalate isomerase large subunit YP_179857.1 1764931 R 195099 CDS YP_179858.1 57236905 3230647 complement(1766330..1767406) 1 NC_003912.7 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1767406 leuB 3230647 leuB Campylobacter jejuni RM1221 3-isopropylmalate dehydrogenase YP_179858.1 1766330 R 195099 CDS YP_179859.1 57236906 3230648 complement(1767403..1768938) 1 NC_003912.7 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1768938 leuA 3230648 leuA Campylobacter jejuni RM1221 2-isopropylmalate synthase YP_179859.1 1767403 R 195099 CDS YP_179860.1 57236907 3230649 1769258..1769887 1 NC_003912.7 hypothetical protein 1769887 3230649 CJE1890 Campylobacter jejuni RM1221 hypothetical protein YP_179860.1 1769258 D 195099 CDS YP_179861.1 57236908 3230650 complement(1769923..1770567) 1 NC_003912.7 identified by similarity to OMNI:CC0747; hypothetical protein 1770567 3230650 CJE1891 Campylobacter jejuni RM1221 hypothetical protein YP_179861.1 1769923 R 195099 CDS YP_179862.1 57236909 3230651 complement(1770705..1771088) 1 NC_003912.7 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1771088 3230651 CJE1892 Campylobacter jejuni RM1221 7-cyano-7-deazaguanine reductase YP_179862.1 1770705 R 195099 CDS YP_179863.1 57236910 3230652 1771248..1771847 1 NC_003912.7 identified by similarity to OMNI:NTL01AA00295; hypothetical protein 1771847 3230652 CJE1893 Campylobacter jejuni RM1221 hypothetical protein YP_179863.1 1771248 D 195099 CDS YP_179864.1 57236911 3230653 complement(1771852..1772733) 1 NC_003912.7 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 1772733 metA 3230653 metA Campylobacter jejuni RM1221 homoserine O-succinyltransferase YP_179864.1 1771852 R 195099 CDS YP_179865.1 57236912 3230654 complement(1772817..1774088) 1 NC_003912.7 identified by similarity to GP:1835113; match to protein family HMM PF01053; match to protein family HMM TIGR01326; homoserine O-acetyltransferase 1774088 metX 3230654 metX Campylobacter jejuni RM1221 homoserine O-acetyltransferase YP_179865.1 1772817 R 195099 CDS YP_179866.1 57236913 3230655 complement(1774513..1777050) 1 NC_003912.7 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1777050 flgE 3230655 flgE Campylobacter jejuni RM1221 flagellar hook protein FlgE YP_179866.1 1774513 R 195099 CDS YP_179867.1 57236914 3230656 complement(1777254..1777736) 1 NC_003912.7 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1777736 ruvC 3230656 ruvC Campylobacter jejuni RM1221 Holliday junction resolvase YP_179867.1 1777254 R 195099 CDS