-- dump date 20140619_022047 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 195099000001 SEQ_END SEQ_END NC_003912.7 1777831 1777831 DR NC_003912.7; contig end 1777831..1777831 Campylobacter jejuni RM1221 YP_178030.1 CDS dnaA NC_003912.7 1 1323 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1..1323 Campylobacter jejuni RM1221 3230657 YP_178031.1 CDS dnaN NC_003912.7 1483 2550 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1483..2550 Campylobacter jejuni RM1221 3230658 YP_178032.1 CDS gyrB NC_003912.7 2579 4888 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 2579..4888 Campylobacter jejuni RM1221 3230659 YP_178033.1 CDS CJE0004 NC_003912.7 4914 5255 R identified by similarity to GB:AAN53794.1; hypothetical protein complement(4914..5255) Campylobacter jejuni RM1221 3230660 YP_178034.1 CDS CJE0005 NC_003912.7 5258 6496 R identified by match to protein family HMM PF00174; match to protein family HMM PF03404; molybdopterin oxidoreductase complement(5258..6496) Campylobacter jejuni RM1221 3230661 YP_178035.1 CDS CJE0006 NC_003912.7 6707 8008 D identified by similarity to GP:28204350; match to protein family HMM PF03553; Na+/H+ antiporter family protein 6707..8008 Campylobacter jejuni RM1221 3230662 YP_178036.1 CDS gltB NC_003912.7 8142 12632 D identified by similarity to SP:P39812; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898; match to protein family HMM TIGR01612; glutamate synthase large subunit 8142..12632 Campylobacter jejuni RM1221 3230663 YP_178037.1 CDS gltD NC_003912.7 12642 14087 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 12642..14087 Campylobacter jejuni RM1221 3230664 YP_178038.1 CDS rnhB NC_003912.7 14088 14663 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(14088..14663) Campylobacter jejuni RM1221 3230665 YP_178039.1 CDS comEA NC_003912.7 14696 14935 R identified by similarity to GP:10505056; match to protein family HMM PF00633; match to protein family HMM TIGR00426; competence protein ComEA complement(14696..14935) Campylobacter jejuni RM1221 3230666 YP_178040.1 CDS rbr NC_003912.7 15000 15551 R identified by similarity to GP:22450191; match to protein family HMM PF00301; match to protein family HMM PF02915; rubrerythrin complement(15000..15551) Campylobacter jejuni RM1221 3230667 YP_178041.1 CDS ilvD NC_003912.7 15807 17483 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 15807..17483 Campylobacter jejuni RM1221 3230668 YP_178042.1 CDS CJE0015 NC_003912.7 17983 19209 R identified by similarity to OMNI:HP0711; hypothetical protein complement(17983..19209) Campylobacter jejuni RM1221 3230670 YP_178043.1 CDS CJE0016 NC_003912.7 19287 19961 D identified by match to protein family HMM TIGR00364; ExsB 19287..19961 Campylobacter jejuni RM1221 3230671 YP_178044.1 CDS CJE0017 NC_003912.7 19982 21508 R identified by similarity to PIR:D71920; match to protein family HMM PF02600; DsbB family disulfide bond formation protein complement(19982..21508) Campylobacter jejuni RM1221 3230672 YP_178045.1 CDS CJE0018 NC_003912.7 21520 21687 R hypothetical protein complement(21520..21687) Campylobacter jejuni RM1221 3230673 YP_178046.1 CDS CJE0019 NC_003912.7 21793 23574 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(21793..23574) Campylobacter jejuni RM1221 3230674 YP_178047.1 CDS ccpA-1 NC_003912.7 23564 24478 R identified by similarity to SP:P14532; match to protein family HMM PF03150; cytochrome C551 peroxidase complement(23564..24478) Campylobacter jejuni RM1221 3230675 YP_178048.1 CDS CJE0021 NC_003912.7 24542 25420 R identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase complement(24542..25420) Campylobacter jejuni RM1221 3230676 YP_178049.1 CDS CJE0022 NC_003912.7 25533 26435 R identified by match to protein family HMM PF00849; RNA pseudouridylate synthase complement(25533..26435) Campylobacter jejuni RM1221 3230677 YP_178050.1 CDS purB-1 NC_003912.7 26513 27841 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 26513..27841 Campylobacter jejuni RM1221 3230678 YP_178051.1 CDS nrdA NC_003912.7 27857 30226 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 27857..30226 Campylobacter jejuni RM1221 3230679 YP_178052.1 CDS CJE0025 NC_003912.7 30265 31650 R identified by match to protein family HMM PF00375; sodium/dicarboxylate symporter complement(30265..31650) Campylobacter jejuni RM1221 3230680 YP_178053.1 CDS thyX NC_003912.7 31770 32393 R flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase complement(31770..32393) Campylobacter jejuni RM1221 3230681 YP_178054.1 CDS pyrG NC_003912.7 32513 34144 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 32513..34144 Campylobacter jejuni RM1221 3230682 YP_178055.1 CDS recJ NC_003912.7 34131 35702 D identified by similarity to OMNI:HP0348; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 34131..35702 Campylobacter jejuni RM1221 3230683 YP_178056.1 CDS ansA NC_003912.7 35798 36793 D identified by similarity to GP:443453; match to protein family HMM PF00710; match to protein family HMM TIGR00520; L-asparaginase 35798..36793 Campylobacter jejuni RM1221 3230684 YP_178057.1 CDS CJE0030 NC_003912.7 43241 44638 D hypothetical protein 43241..44638 Campylobacter jejuni RM1221 3230794 YP_178058.1 CDS CJE0031 NC_003912.7 44699 48472 D identified by similarity to PIR:D71810; type II restriction-modification enzyme 44699..48472 Campylobacter jejuni RM1221 3230795 YP_178059.1 CDS CJE0032 NC_003912.7 48472 50928 D hypothetical protein 48472..50928 Campylobacter jejuni RM1221 3230796 YP_178060.1 CDS CJE0033 NC_003912.7 50958 51659 R identified by similarity to GP:28805357; match to protein family HMM PF04402; hypothetical protein complement(50958..51659) Campylobacter jejuni RM1221 3230797 YP_178061.1 CDS CJE0034 NC_003912.7 51656 52858 R identified by match to protein family HMM PF00083; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter complement(51656..52858) Campylobacter jejuni RM1221 3230798 YP_178062.1 CDS CJE0035 NC_003912.7 52961 54310 D identified by similarity to OMNI:NTL01HP01063; hypothetical protein 52961..54310 Campylobacter jejuni RM1221 3230799 YP_178063.1 CDS CJE0036 NC_003912.7 54334 55377 R identified by match to protein family HMM PF00034; cytochrome C family protein complement(54334..55377) Campylobacter jejuni RM1221 3230800 YP_178064.1 CDS CJE0037 NC_003912.7 55555 56202 R hypothetical protein complement(55555..56202) Campylobacter jejuni RM1221 3230801 YP_178065.1 CDS typA NC_003912.7 56202 58010 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA complement(56202..58010) Campylobacter jejuni RM1221 3230802 YP_178066.1 CDS CJE0039 NC_003912.7 58145 58468 D hypothetical protein 58145..58468 Campylobacter jejuni RM1221 3230803 YP_178067.1 CDS CJE0040 NC_003912.7 58487 60277 D hypothetical protein 58487..60277 Campylobacter jejuni RM1221 3230804 YP_178068.1 CDS flgD NC_003912.7 60330 61214 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 60330..61214 Campylobacter jejuni RM1221 3230805 YP_178069.1 CDS flgE-1 NC_003912.7 61218 62855 D identified by similarity to SP:Q44767; match to protein family HMM PF00460; flagellar hook protein 61218..62855 Campylobacter jejuni RM1221 3230806 YP_178070.1 CDS CJE0043 NC_003912.7 62859 64730 R hypothetical protein complement(62859..64730) Campylobacter jejuni RM1221 3230807 YP_178071.1 CDS CJE0044 NC_003912.7 64687 65451 R identified by similarity to GB:AAP76601.1; hypothetical protein complement(64687..65451) Campylobacter jejuni RM1221 3230808 YP_178072.1 CDS CJE0045 NC_003912.7 65697 65789 D hypothetical protein 65697..65789 Campylobacter jejuni RM1221 3230809 YP_178073.1 CDS mnmA NC_003912.7 67407 68423 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(67407..68423) Campylobacter jejuni RM1221 3230811 YP_178074.1 CDS CJE0049 NC_003912.7 68423 69028 R identified by match to protein family HMM PF03641; lysine decarboxylase complement(68423..69028) Campylobacter jejuni RM1221 3230812 YP_178075.1 CDS CJE0050 NC_003912.7 69149 69307 R hypothetical protein complement(69149..69307) Campylobacter jejuni RM1221 3230813 YP_178076.1 CDS CJE0051 NC_003912.7 69304 70296 R hypothetical protein complement(69304..70296) Campylobacter jejuni RM1221 3230814 YP_178077.1 CDS CJE0052 NC_003912.7 70366 70638 R hypothetical protein complement(70366..70638) Campylobacter jejuni RM1221 3230815 YP_178078.1 CDS CJE0053 NC_003912.7 70677 70880 R hypothetical protein complement(70677..70880) Campylobacter jejuni RM1221 3230816 YP_178079.1 CDS CJE0054 NC_003912.7 71013 71867 D identified by similarity to GP:2909664; HmcD domain-containing protein 71013..71867 Campylobacter jejuni RM1221 3230817 YP_178080.1 CDS CJE0055 NC_003912.7 71852 72448 D identified by similarity to GP:2909665; match to protein family HMM PF03412; peptidase 71852..72448 Campylobacter jejuni RM1221 3230818 YP_178081.1 CDS fliY NC_003912.7 72497 73318 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliY complement(72497..73318) Campylobacter jejuni RM1221 3230819 YP_178082.1 CDS fliM NC_003912.7 73336 74415 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(73336..74415) Campylobacter jejuni RM1221 3230820 YP_178083.1 CDS fliA NC_003912.7 74415 75107 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(74415..75107) Campylobacter jejuni RM1221 3230821 YP_178084.1 CDS CJE0059 NC_003912.7 75088 75444 R hypothetical protein complement(75088..75444) Campylobacter jejuni RM1221 3230822 YP_178085.1 CDS CJE0060 NC_003912.7 75463 76329 R identified by similarity to GP:6952812; match to protein family HMM PF00991; ParaA family ATPase complement(75463..76329) Campylobacter jejuni RM1221 3230823 YP_178086.1 CDS flhF NC_003912.7 76322 77776 R positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF complement(76322..77776) Campylobacter jejuni RM1221 3230824 YP_178087.1 CDS folK NC_003912.7 77786 78259 R identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(77786..78259) Campylobacter jejuni RM1221 3230825 YP_178088.1 CDS aroQ NC_003912.7 78262 78741 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(78262..78741) Campylobacter jejuni RM1221 3230826 YP_178089.1 CDS CJE0064 NC_003912.7 78832 80061 D Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; chlorohydrolase 78832..80061 Campylobacter jejuni RM1221 3230827 YP_178090.1 CDS sppA NC_003912.7 80049 80945 D identified by similarity to GP:1655731; match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type 80049..80945 Campylobacter jejuni RM1221 3230828 YP_178091.1 CDS CJE0066 NC_003912.7 81097 82053 D identified by similarity to OMNI:NTL01CE0721; hypothetical protein 81097..82053 Campylobacter jejuni RM1221 3230829 YP_178092.1 CDS CJE0067 NC_003912.7 82050 82208 R hypothetical protein complement(82050..82208) Campylobacter jejuni RM1221 3230830 YP_178093.1 CDS CJE0069 NC_003912.7 83090 83746 R identified by similarity to OMNI:HP0137; match to protein family HMM PF02589; hypothetical protein complement(83090..83746) Campylobacter jejuni RM1221 3230832 YP_178094.1 CDS CJE0070 NC_003912.7 83739 85178 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273; iron-sulfur cluster binding protein complement(83739..85178) Campylobacter jejuni RM1221 3230833 YP_178095.1 CDS CJE0071 NC_003912.7 85175 85915 R identified by match to protein family HMM PF02754; hypothetical protein complement(85175..85915) Campylobacter jejuni RM1221 3230834 YP_178096.1 CDS lctP NC_003912.7 86025 87722 R identified by similarity to SP:P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease complement(86025..87722) Campylobacter jejuni RM1221 3230835 YP_178097.1 CDS cdtC NC_003912.7 87894 88463 R identified by similarity to OMNI:NTL01CJ00072; match to protein family HMM PF03499; cytolethal distending toxin, subunit C complement(87894..88463) Campylobacter jejuni RM1221 3230836 YP_178098.1 CDS cdtB NC_003912.7 88474 89271 R identified by similarity to GP:416215; match to protein family HMM PF03372; cytolethal distending toxin, subunit B complement(88474..89271) Campylobacter jejuni RM1221 3230837 YP_178099.1 CDS cdtA NC_003912.7 89268 90074 R identified by similarity to SP:Q46100; match to protein family HMM PF03498; cytolethal distending toxin, subunit A complement(89268..90074) Campylobacter jejuni RM1221 3230838 YP_178100.1 CDS CJE0076 NC_003912.7 90151 90420 D identified by similarity to GP:29338518; hypothetical protein 90151..90420 Campylobacter jejuni RM1221 3230839 YP_178101.1 CDS cydA NC_003912.7 90421 91983 D identified by similarity to SP:P11026; match to protein family HMM PF01654; cytochrome d ubiquinol oxidase, subunit I 90421..91983 Campylobacter jejuni RM1221 3230840 YP_178102.1 CDS cydB NC_003912.7 91983 93107 D identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase, subunit II 91983..93107 Campylobacter jejuni RM1221 3230841 YP_178103.1 CDS CJE0079 NC_003912.7 93117 93221 D hypothetical protein 93117..93221 Campylobacter jejuni RM1221 3230842 YP_178104.1 CDS CJE0080 NC_003912.7 93301 93996 R identified by similarity to OMNI:NTL01PH00693; match to protein family HMM PF01177; match to protein family HMM TIGR00035; aspartate racemase complement(93301..93996) Campylobacter jejuni RM1221 3230843 YP_178105.1 CDS ung NC_003912.7 94116 94811 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(94116..94811) Campylobacter jejuni RM1221 3230844 YP_178106.1 CDS aspA NC_003912.7 95082 96488 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 95082..96488 Campylobacter jejuni RM1221 3230845 YP_178107.1 CDS dcuA NC_003912.7 96514 97842 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 96514..97842 Campylobacter jejuni RM1221 3230846 YP_178108.1 CDS CJE0084 NC_003912.7 97948 99309 D identified by similarity to OMNI:NTL01HP00016; match to protein family HMM PF04141; lipoprotein 97948..99309 Campylobacter jejuni RM1221 3230847 YP_178109.1 CDS CJE0085 NC_003912.7 99319 99687 D lipoprotein 99319..99687 Campylobacter jejuni RM1221 3230848 YP_178110.1 CDS CJE0086 NC_003912.7 99711 100334 D identified by similarity to OMNI:HP1457; lipoprotein 99711..100334 Campylobacter jejuni RM1221 3230849 YP_178111.1 CDS CJE0087 NC_003912.7 100417 101754 D hypothetical protein 100417..101754 Campylobacter jejuni RM1221 3230850 YP_178112.1 CDS CJE0088 NC_003912.7 101764 102966 D hypothetical protein 101764..102966 Campylobacter jejuni RM1221 3230851 YP_178113.1 CDS rplU NC_003912.7 103125 103433 D identified by similarity to SP:P02422; similarity to EGAD:23167; match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 103125..103433 Campylobacter jejuni RM1221 3230852 YP_178114.1 CDS rpmA NC_003912.7 103444 103698 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 103444..103698 Campylobacter jejuni RM1221 3230853 YP_178115.1 CDS obgE NC_003912.7 103805 104857 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 103805..104857 Campylobacter jejuni RM1221 3230854 YP_178116.1 CDS proB NC_003912.7 104962 105717 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 104962..105717 Campylobacter jejuni RM1221 3230855 YP_178117.1 CDS fmt NC_003912.7 105791 106708 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 105791..106708 Campylobacter jejuni RM1221 3230856 YP_178118.1 CDS CJE0094 NC_003912.7 106671 107324 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 106671..107324 Campylobacter jejuni RM1221 3230857 YP_178119.1 CDS CJE0095 NC_003912.7 107321 108106 D identified by similarity to SP:P37522; match to protein family HMM PF00991; ParA family chromosome partitioning ATPase 107321..108106 Campylobacter jejuni RM1221 3230858 YP_178120.1 CDS CJE0096 NC_003912.7 108112 108948 D identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family chromosome partitioning protein 108112..108948 Campylobacter jejuni RM1221 3230859 YP_178121.1 CDS CJE0097 NC_003912.7 109009 109434 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' 109009..109434 Campylobacter jejuni RM1221 3230860 YP_178122.1 CDS CJE0098 NC_003912.7 109445 109957 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 109445..109957 Campylobacter jejuni RM1221 3230861 YP_178123.1 CDS atpH NC_003912.7 109960 110481 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 109960..110481 Campylobacter jejuni RM1221 3230862 YP_178124.1 CDS atpA NC_003912.7 110495 112000 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 110495..112000 Campylobacter jejuni RM1221 3230863 YP_178125.1 CDS atpG NC_003912.7 112009 112893 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 112009..112893 Campylobacter jejuni RM1221 3230864 YP_178126.1 CDS atpD NC_003912.7 112919 114316 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 112919..114316 Campylobacter jejuni RM1221 3230865 YP_178127.1 CDS atpC NC_003912.7 114320 114709 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 114320..114709 Campylobacter jejuni RM1221 3230866 YP_178128.1 CDS CJE0104 NC_003912.7 114709 115263 D identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 114709..115263 Campylobacter jejuni RM1221 3230867 YP_178129.1 CDS CJE0105 NC_003912.7 115272 115661 D identified by similarity to SP:P18784; match to protein family HMM PF02472; TonB system transport protein ExbD 115272..115661 Campylobacter jejuni RM1221 3230868 YP_178130.1 CDS CJE0106 NC_003912.7 115664 116443 D TonB domain-containing protein 115664..116443 Campylobacter jejuni RM1221 3230869 YP_178131.1 CDS tolB NC_003912.7 116453 117661 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 116453..117661 Campylobacter jejuni RM1221 3230870 YP_178132.1 CDS CJE0108 NC_003912.7 117738 118235 D identified by similarity to SP:P07176; match to protein family HMM PF00691; peptidoglycan-associated lipoprotein Omp18 117738..118235 Campylobacter jejuni RM1221 3230871 YP_178133.1 CDS CJE0109 NC_003912.7 118239 119186 D identified by similarity to OMNI:HP1124; hypothetical protein 118239..119186 Campylobacter jejuni RM1221 3230872 YP_178134.1 CDS slyD NC_003912.7 119201 119770 D identified by similarity to SP:P30856; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 119201..119770 Campylobacter jejuni RM1221 3230873 YP_178135.1 CDS fabD NC_003912.7 119770 120690 D identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-ACP transacylase 119770..120690 Campylobacter jejuni RM1221 3230874 YP_178136.1 CDS mtnA NC_003912.7 120687 121376 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 120687..121376 Campylobacter jejuni RM1221 3230875 YP_178137.1 CDS CJE0113 NC_003912.7 121373 122128 D identified by match to protein family HMM PF01171; PP-loop family protein 121373..122128 Campylobacter jejuni RM1221 3230876 YP_178138.1 CDS CJE0114 NC_003912.7 122133 122654 D identified by similarity to GB:AAD11442.1; pyrazinamidase/nicotinamidase 122133..122654 Campylobacter jejuni RM1221 3230877 YP_178139.1 CDS CJE0115 NC_003912.7 122654 123268 D identified by similarity to OMNI:HP0951; recombination protein RecO 122654..123268 Campylobacter jejuni RM1221 3230878 YP_178140.1 CDS CJE0116 NC_003912.7 123265 123672 D identified by similarity to GP:28974225; match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease 123265..123672 Campylobacter jejuni RM1221 3230879 YP_178141.1 CDS CJE0117 NC_003912.7 123796 124485 D hypothetical protein 123796..124485 Campylobacter jejuni RM1221 3230880 YP_178142.1 CDS dusB NC_003912.7 124510 125436 R identified by similarity to SP:P25717; match to protein family HMM PF01207; tRNA-dihydrouridine synthase B complement(124510..125436) Campylobacter jejuni RM1221 3230881 YP_178143.1 CDS CJE0119 NC_003912.7 125433 126419 R identified by similarity to OMNI:NTL01HP00875; hypothetical protein complement(125433..126419) Campylobacter jejuni RM1221 3230882 YP_178144.1 CDS CJE0120 NC_003912.7 126409 126771 R identified by similarity to SP:P18274; match to protein family HMM PF01258; dnaK suppressor protein complement(126409..126771) Campylobacter jejuni RM1221 3230883 YP_178145.1 CDS CJE0121 NC_003912.7 126783 127244 R identified by similarity to GP:28202370; match to protein family HMM PF02590; hypothetical protein complement(126783..127244) Campylobacter jejuni RM1221 3230884 YP_178146.1 CDS accD NC_003912.7 127234 128076 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(127234..128076) Campylobacter jejuni RM1221 3230885 YP_178147.1 CDS CJE0123 NC_003912.7 128085 128807 R identified by similarity to SP:P22783; match to protein family HMM PF00459; inositol monophosphatase complement(128085..128807) Campylobacter jejuni RM1221 3230886 YP_178148.1 CDS CJE0124 NC_003912.7 128807 131026 R identified by similarity to OMNI:NTL01HP00596; match to protein family HMM PF01103; OMP85 family outer membrane protein complement(128807..131026) Campylobacter jejuni RM1221 3230887 YP_178149.1 CDS tyrA NC_003912.7 131103 131930 D catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 131103..131930 Campylobacter jejuni RM1221 3230888 YP_178150.1 CDS CJE0126 NC_003912.7 132010 133383 D identified by match to protein family HMM PF01551; M24/M37 family peptidase 132010..133383 Campylobacter jejuni RM1221 3230889 YP_178151.1 CDS lpxC NC_003912.7 133383 134267 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 133383..134267 Campylobacter jejuni RM1221 3230890 YP_178152.1 CDS CJE0128 NC_003912.7 134306 134707 D identified by similarity to GP:2314199; hypothetical protein 134306..134707 Campylobacter jejuni RM1221 3230891 YP_178153.1 CDS thrB NC_003912.7 134716 135594 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 134716..135594 Campylobacter jejuni RM1221 3230892 YP_178154.1 CDS CJE0130 NC_003912.7 135619 135876 D identified by similarity to OMNI:NTL01HP00373; match to protein family HMM PF04296; hypothetical protein 135619..135876 Campylobacter jejuni RM1221 3230893 YP_178155.1 CDS infB NC_003912.7 135863 138478 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 135863..138478 Campylobacter jejuni RM1221 3230894 YP_178156.1 CDS rbfA NC_003912.7 138475 138837 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 138475..138837 Campylobacter jejuni RM1221 3230895 YP_178157.1 CDS CJE0133 NC_003912.7 138827 139249 D identified by similarity to SP:Q9ZM44; match to protein family HMM PF02576; hypothetical protein 138827..139249 Campylobacter jejuni RM1221 3230896 YP_178158.1 CDS CJE0134 NC_003912.7 139354 141342 D identified by similarity to SP:P15005; McrBC restriction endonuclease system, McrB subunit 139354..141342 Campylobacter jejuni RM1221 3230897 YP_178159.1 CDS CJE0135 NC_003912.7 141335 142666 D hypothetical protein 141335..142666 Campylobacter jejuni RM1221 3230898 YP_178160.1 CDS CJE0136 NC_003912.7 142655 143458 R identified by similarity to PIR:T46653; match to protein family HMM PF00950; cation ABC transporter permease complement(142655..143458) Campylobacter jejuni RM1221 3230899 YP_178161.1 CDS CJE0137 NC_003912.7 143451 144305 R identified by similarity to SP:Q9XDA6; match to protein family HMM PF00005; cation ABC transporter ATP-binding protein complement(143451..144305) Campylobacter jejuni RM1221 3230900 YP_178162.1 CDS CJE0138 NC_003912.7 144318 145208 R identified by match to protein family HMM PF01297; cation ABC transporter periplasmic cation-binding protein complement(144318..145208) Campylobacter jejuni RM1221 3230901 YP_178163.1 CDS CJE0139 NC_003912.7 145477 145806 D hypothetical protein 145477..145806 Campylobacter jejuni RM1221 3230902 YP_178164.1 CDS CJE0140 NC_003912.7 145824 147446 D identified by similarity to OMNI:NTL01CJ01441; match to protein family HMM PF00015; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 145824..147446 Campylobacter jejuni RM1221 3230903 YP_178165.1 CDS CJE0141 NC_003912.7 147581 149362 D identified by similarity to PIR:G82508; match to protein family HMM PF05787; match to protein family HMM TIGR01409; hypothetical protein 147581..149362 Campylobacter jejuni RM1221 3230904 YP_178166.1 CDS trxB NC_003912.7 149400 150338 R identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase complement(149400..150338) Campylobacter jejuni RM1221 3230905 YP_178167.1 CDS trx NC_003912.7 150472 150786 R identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin complement(150472..150786) Campylobacter jejuni RM1221 3230906 YP_178168.1 CDS CJE0144 NC_003912.7 150843 151181 R identified by similarity to SP:O25499; match to protein family HMM PF02021; hypothetical protein complement(150843..151181) Campylobacter jejuni RM1221 3230907 YP_178169.1 CDS hom NC_003912.7 151181 152428 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(151181..152428) Campylobacter jejuni RM1221 3230908 YP_178170.1 CDS CJE0146 NC_003912.7 152432 153634 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(152432..153634) Campylobacter jejuni RM1221 3230909 YP_178171.1 CDS CJE0147 NC_003912.7 153646 154452 R identified by similarity to OMNI:HP0555; hypothetical protein complement(153646..154452) Campylobacter jejuni RM1221 3230910 YP_178172.1 CDS CJE0148 NC_003912.7 154446 155384 R identified by similarity to OMNI:HP0554; hypothetical protein complement(154446..155384) Campylobacter jejuni RM1221 3230911 YP_178173.1 CDS CJE0149 NC_003912.7 155377 156060 R identified by match to protein family HMM PF00588; RNA methyltransferase complement(155377..156060) Campylobacter jejuni RM1221 3230912 YP_178174.1 CDS CJE0150 NC_003912.7 156074 156898 R identified by similarity to SP:Q9ZLS8; match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase complement(156074..156898) Campylobacter jejuni RM1221 3230913 YP_178175.1 CDS rpmE NC_003912.7 156901 157101 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(156901..157101) Campylobacter jejuni RM1221 3230914 YP_178176.1 CDS CJE0152 NC_003912.7 157180 157836 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(157180..157836) Campylobacter jejuni RM1221 3230915 YP_178177.1 CDS CJE0153 NC_003912.7 157838 158245 R hypothetical protein complement(157838..158245) Campylobacter jejuni RM1221 3230916 YP_178178.1 CDS CJE0154 NC_003912.7 158245 158670 R identified by match to protein family HMM PF00034; cytochrome C family protein complement(158245..158670) Campylobacter jejuni RM1221 3230917 YP_178179.1 CDS CJE0155 NC_003912.7 158670 159251 R 6-pyruvoyl tetrahydrobiopterin synthase-like protein complement(158670..159251) Campylobacter jejuni RM1221 3230918 YP_178180.1 CDS CJE0156 NC_003912.7 159248 159991 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(159248..159991) Campylobacter jejuni RM1221 3230919 YP_178181.1 CDS moaA NC_003912.7 159994 160956 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(159994..160956) Campylobacter jejuni RM1221 3230920 YP_178182.1 CDS CJE0158 NC_003912.7 160969 161484 R identified by similarity to OMNI:NTL01HP01266; hypothetical protein complement(160969..161484) Campylobacter jejuni RM1221 3230921 YP_178183.1 CDS CJE0159 NC_003912.7 161481 161978 R identified by similarity to OMNI:HP1359; hypothetical protein complement(161481..161978) Campylobacter jejuni RM1221 3230922 YP_178184.1 CDS ubiA NC_003912.7 161969 162853 R UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase complement(161969..162853) Campylobacter jejuni RM1221 3230923 YP_178185.1 CDS miaA NC_003912.7 162924 163793 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 162924..163793 Campylobacter jejuni RM1221 3230924 YP_178186.1 CDS CJE0162 NC_003912.7 163779 164342 R identified by similarity to OMNI:NTL03CP0535; match to protein family HMM PF02659; hypothetical protein complement(163779..164342) Campylobacter jejuni RM1221 3230925 YP_178187.1 CDS CJE0163 NC_003912.7 164700 164882 R hypothetical protein complement(164700..164882) Campylobacter jejuni RM1221 3230926 YP_178188.1 CDS sodB NC_003912.7 165146 165808 D identified by similarity to SP:P09157; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe 165146..165808 Campylobacter jejuni RM1221 3230927 YP_178189.1 CDS CJE0165 NC_003912.7 165836 167041 R identified by match to protein family HMM PF03435; saccharopine dehydrogenase complement(165836..167041) Campylobacter jejuni RM1221 3230928 YP_178190.1 CDS CJE0166 NC_003912.7 167083 167991 R identified by match to protein family HMM PF00005; iron ABC transporter ATP binding subunit complement(167083..167991) Campylobacter jejuni RM1221 3230929 YP_178191.1 CDS CJE0167 NC_003912.7 167975 169591 R identified by match to protein family HMM PF00528; iron ABC transporter permease complement(167975..169591) Campylobacter jejuni RM1221 3230930 YP_178192.1 CDS CJE0168 NC_003912.7 169591 170595 R identified by similarity to GP:2125893; match to protein family HMM PF01547; iron ABC transporter periplasmic iron-binding protein complement(169591..170595) Campylobacter jejuni RM1221 3230931 YP_178193.1 CDS CJE0169 NC_003912.7 170606 170815 R hypothetical protein complement(170606..170815) Campylobacter jejuni RM1221 3230932 YP_178194.1 CDS CJE0170 NC_003912.7 170945 171796 D identified by similarity to GP:14571873; match to protein family HMM PF04187; TonB-dependent colicin lipoprotein 170945..171796 Campylobacter jejuni RM1221 3230933 YP_178195.1 CDS CJE0171 NC_003912.7 171793 174060 D identified by similarity to GP:14571875; match to protein family HMM PF00593; TonB-dependent colicin receptor protein 171793..174060 Campylobacter jejuni RM1221 3230934 YP_178196.1 CDS exbB-1 NC_003912.7 174072 174833 D identified by similarity to SP:P18783; match to protein family HMM PF01618; TonB system transport protein ExbB 174072..174833 Campylobacter jejuni RM1221 3230935 YP_178197.1 CDS CJE0173 NC_003912.7 174820 175230 D identified by similarity to SP:P18784; match to protein family HMM PF02472; biopolymer ExbD/TolR family transporter 174820..175230 Campylobacter jejuni RM1221 3230936 YP_178198.1 CDS CJE0174 NC_003912.7 175232 175978 D identified by similarity to GB:AAK67308.1; match to protein family HMM TIGR01352; TonB-dependent colicin receptor protein 175232..175978 Campylobacter jejuni RM1221 3230937 YP_178199.1 CDS CJE0175 NC_003912.7 176030 177229 D in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transporter 176030..177229 Campylobacter jejuni RM1221 3230938 YP_178200.1 CDS CJE0176 NC_003912.7 177400 178686 D identified by similarity to GP:29895731; match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; transporter 177400..178686 Campylobacter jejuni RM1221 3230939 YP_178201.1 CDS CJE0177 NC_003912.7 178700 179884 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase complement(178700..179884) Campylobacter jejuni RM1221 3230940 YP_178202.1 CDS CJE0178 NC_003912.7 179894 180103 R identified by match to protein family HMM PF03831; PhnA domain-containing protein complement(179894..180103) Campylobacter jejuni RM1221 3230941 YP_178203.1 CDS CJE0179 NC_003912.7 180096 180815 R identified by similarity to SP:P43932; match to protein family HMM PF03741; TerC family integral membrane protein complement(180096..180815) Campylobacter jejuni RM1221 3230942 YP_178204.1 CDS purN NC_003912.7 180887 181453 R identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase complement(180887..181453) Campylobacter jejuni RM1221 3230943 YP_178205.1 CDS CJE0181 NC_003912.7 181444 182814 R identified by similarity to SP:Q9ZJM4; match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; hypothetical protein complement(181444..182814) Campylobacter jejuni RM1221 3230944 YP_178206.1 CDS CJE0182 NC_003912.7 182798 183496 R identified by similarity to OMNI:CT0467; match to protein family HMM PF01936; hypothetical protein complement(182798..183496) Campylobacter jejuni RM1221 3230945 YP_178207.1 CDS CJE0183 NC_003912.7 183498 185003 R identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-related protein complement(183498..185003) Campylobacter jejuni RM1221 3230946 YP_178208.1 CDS def NC_003912.7 185000 185527 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(185000..185527) Campylobacter jejuni RM1221 3230947 YP_178209.1 CDS clpP NC_003912.7 185563 186147 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(185563..186147) Campylobacter jejuni RM1221 3230948 YP_178210.1 CDS tig NC_003912.7 186147 187481 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(186147..187481) Campylobacter jejuni RM1221 3230949 YP_178211.1 CDS folE NC_003912.7 187625 188197 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 187625..188197 Campylobacter jejuni RM1221 3230950 YP_178212.1 CDS fliI NC_003912.7 188197 189582 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 188197..189582 Campylobacter jejuni RM1221 3230951 YP_178213.1 CDS purF NC_003912.7 189585 190922 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(189585..190922) Campylobacter jejuni RM1221 3230952 YP_178214.1 CDS dapB NC_003912.7 190924 191652 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(190924..191652) Campylobacter jejuni RM1221 3230953 YP_178215.1 CDS CJE0191 NC_003912.7 191715 192896 R identified by match to protein family HMM PF00004; recombination factor protein RarA complement(191715..192896) Campylobacter jejuni RM1221 3230954 YP_178216.1 CDS CJE0192 NC_003912.7 192896 194023 R hypothetical protein complement(192896..194023) Campylobacter jejuni RM1221 3230955 YP_178217.1 CDS CJE0193 NC_003912.7 194157 194504 R hypothetical protein complement(194157..194504) Campylobacter jejuni RM1221 3230956 YP_178218.1 CDS CJE0194 NC_003912.7 194603 195208 R identified by similarity to OMNI:PG0424; hypothetical protein complement(194603..195208) Campylobacter jejuni RM1221 3230957 YP_178219.1 CDS CJE0195 NC_003912.7 195177 195500 R hypothetical protein complement(195177..195500) Campylobacter jejuni RM1221 3230958 YP_178220.1 CDS CJE0197 NC_003912.7 197273 199267 D identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733; OPT family oligopeptide transporter 197273..199267 Campylobacter jejuni RM1221 3230960 YP_178221.1 CDS CJE0198 NC_003912.7 199341 200144 D identified by similarity to SP:P31054; match to protein family HMM PF02673; match to protein family HMM TIGR00753; undecaprenol kinase 199341..200144 Campylobacter jejuni RM1221 3230961 YP_178222.1 CDS thrS NC_003912.7 200275 202083 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 200275..202083 Campylobacter jejuni RM1221 3230962 YP_178223.1 CDS infC NC_003912.7 202080 202598 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 202080..202598 Campylobacter jejuni RM1221 3230963 YP_178224.1 CDS CJE0201 NC_003912.7 202637 203728 D identified by similarity to SP:P24582; match to protein family HMM PF02086; D12 class N6 adenine-specific DNA methyltransferase 202637..203728 Campylobacter jejuni RM1221 3230964 YP_178225.1 CDS CJE0202 NC_003912.7 203768 203869 D hypothetical protein 203768..203869 Campylobacter jejuni RM1221 3230965 YP_178226.1 CDS CJE0203 NC_003912.7 203805 203918 D hypothetical protein 203805..203918 Campylobacter jejuni RM1221 3230966 YP_178227.1 CDS CJE0204 NC_003912.7 203958 204083 D hypothetical protein 203958..204083 Campylobacter jejuni RM1221 3230967 YP_178228.1 CDS CJE0205 NC_003912.7 204203 204649 D hypothetical protein 204203..204649 Campylobacter jejuni RM1221 3230968 YP_178229.1 CDS CJE0206 NC_003912.7 204813 205043 D hypothetical protein 204813..205043 Campylobacter jejuni RM1221 3230969 YP_178230.1 CDS CJE0207 NC_003912.7 205106 205345 D hypothetical protein 205106..205345 Campylobacter jejuni RM1221 3230970 YP_178231.1 CDS CJE0208 NC_003912.7 205424 205606 D identified by similarity to GB:CAA11507.1; hypothetical protein 205424..205606 Campylobacter jejuni RM1221 3230971 YP_178232.1 CDS CJE0209 NC_003912.7 205700 205882 R hypothetical protein complement(205700..205882) Campylobacter jejuni RM1221 3230972 YP_178233.1 CDS CJE0210 NC_003912.7 205926 206042 D hypothetical protein 205926..206042 Campylobacter jejuni RM1221 3230973 YP_178234.1 CDS CJE0211 NC_003912.7 206043 206246 D identified by similarity to GP:886953; pathogenicity domain-containing protein 206043..206246 Campylobacter jejuni RM1221 3230974 YP_178235.1 CDS CJE0212 NC_003912.7 206505 206687 D identified by similarity to SP:P76017; pathogenicity protein,-like protein 206505..206687 Campylobacter jejuni RM1221 3230975 YP_178236.1 CDS CJE0213 NC_003912.7 207115 207315 R hypothetical protein complement(207115..207315) Campylobacter jejuni RM1221 3230976 YP_178237.1 CDS CJE0214 NC_003912.7 207469 207564 D hypothetical protein 207469..207564 Campylobacter jejuni RM1221 3230977 YP_178238.1 CDS CJE0215 NC_003912.7 207610 208239 D identified by similarity to SP:P14819; match to protein family HMM PF00717; phage repressor protein 207610..208239 Campylobacter jejuni RM1221 3230978 YP_178239.1 CDS CJE0216 NC_003912.7 208320 208640 D hypothetical protein 208320..208640 Campylobacter jejuni RM1221 3230979 YP_178240.1 CDS CJE0217 NC_003912.7 208650 208844 D identified by similarity to GP:29424997; hypothetical protein 208650..208844 Campylobacter jejuni RM1221 3230980 YP_178241.1 CDS CJE0218 NC_003912.7 208876 208992 R hypothetical protein complement(208876..208992) Campylobacter jejuni RM1221 3230981 YP_178242.1 CDS CJE0219 NC_003912.7 209029 209211 D hypothetical protein 209029..209211 Campylobacter jejuni RM1221 3230982 YP_178243.1 CDS dam NC_003912.7 209239 210054 R identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; DNA adenine methylase complement(209239..210054) Campylobacter jejuni RM1221 3230983 YP_178244.1 CDS CJE0221 NC_003912.7 210256 210744 R identified by similarity to SP:Q57777; phage virion morphogenesis protein complement(210256..210744) Campylobacter jejuni RM1221 3230984 YP_178245.1 CDS CJE0222 NC_003912.7 210748 212964 R identified by similarity to OMNI:WD0570; match to protein family HMM TIGR01369; match to protein family HMM TIGR01760; TP901 family tail tape measure protein complement(210748..212964) Campylobacter jejuni RM1221 3230985 YP_178246.1 CDS CJE0223 NC_003912.7 212985 213311 D hypothetical protein 212985..213311 Campylobacter jejuni RM1221 3230986 YP_178247.1 CDS CJE0224 NC_003912.7 213298 213396 R hypothetical protein complement(213298..213396) Campylobacter jejuni RM1221 3230987 YP_178248.1 CDS CJE0225 NC_003912.7 213423 213662 R identified by similarity to GP:15278360; hypothetical protein complement(213423..213662) Campylobacter jejuni RM1221 3230988 YP_178249.1 CDS CJE0226 NC_003912.7 213815 214324 R phage major tail tube protein complement(213815..214324) Campylobacter jejuni RM1221 3230989 YP_178250.1 CDS CJE0227 NC_003912.7 214351 215544 R identified by similarity to SP:P22501; major tail sheath protein complement(214351..215544) Campylobacter jejuni RM1221 3230990 YP_178251.1 CDS CJE0228 NC_003912.7 215555 216568 R hypothetical protein complement(215555..216568) Campylobacter jejuni RM1221 3230991 YP_178252.1 CDS CJE0229 NC_003912.7 216668 217039 R identified by similarity to OMNI:NTL03ST1666; hypothetical protein complement(216668..217039) Campylobacter jejuni RM1221 3230992 YP_178253.1 CDS CJE0230 NC_003912.7 217036 217542 R hypothetical protein complement(217036..217542) Campylobacter jejuni RM1221 3230993 YP_178254.1 CDS CJE0231 NC_003912.7 217552 218631 R identified by similarity to GB:AAP04455.1; tail fiber protein H complement(217552..218631) Campylobacter jejuni RM1221 3230994 YP_178255.1 CDS CJE0232 NC_003912.7 218631 219251 R identified by similarity to GB:AAL23025.1; phage tail protein complement(218631..219251) Campylobacter jejuni RM1221 3230995 YP_178256.1 CDS CJE0233 NC_003912.7 219248 220414 R identified by similarity to OMNI:PP3054; match to protein family HMM PF04865; baseplate assembly protein J complement(219248..220414) Campylobacter jejuni RM1221 3230996 YP_178257.1 CDS CJE0234 NC_003912.7 220411 220692 R identified by similarity to GP:8670757; match to protein family HMM PF04965; baseplate assembly protein W complement(220411..220692) Campylobacter jejuni RM1221 3230997 YP_178258.1 CDS CJE0235 NC_003912.7 220698 220889 R hypothetical protein complement(220698..220889) Campylobacter jejuni RM1221 3230998 YP_178259.1 CDS CJE0236 NC_003912.7 220898 221530 R identified by similarity to SP:P31340; match to protein family HMM PF04717; match to protein family HMM TIGR01644; baseplate assembly protein V complement(220898..221530) Campylobacter jejuni RM1221 3230999 YP_178260.1 CDS CJE0237 NC_003912.7 221530 221844 R identified by similarity to GP:8670755; hypothetical protein complement(221530..221844) Campylobacter jejuni RM1221 3231000 YP_178261.1 CDS CJE0238 NC_003912.7 221847 221969 R hypothetical protein complement(221847..221969) Campylobacter jejuni RM1221 3231001 YP_178262.1 CDS CJE0239 NC_003912.7 221956 222192 R lipoprotein complement(221956..222192) Campylobacter jejuni RM1221 3231002 YP_178263.1 CDS CJE0240 NC_003912.7 222201 222542 R hypothetical protein complement(222201..222542) Campylobacter jejuni RM1221 3231003 YP_178264.1 CDS CJE0241 NC_003912.7 222553 222942 R hypothetical protein complement(222553..222942) Campylobacter jejuni RM1221 3231004 YP_178265.1 CDS CJE0242 NC_003912.7 223009 223182 R hypothetical protein complement(223009..223182) Campylobacter jejuni RM1221 3232505 YP_178266.1 CDS CJE0243 NC_003912.7 223091 223525 D hypothetical protein 223091..223525 Campylobacter jejuni RM1221 3231005 YP_178267.1 CDS CJE0244 NC_003912.7 223527 224342 D identified by similarity to SP:Q01267; Mu-like prophage I protein 223527..224342 Campylobacter jejuni RM1221 3231006 YP_178268.1 CDS CJE0245 NC_003912.7 224507 224872 D hypothetical protein 224507..224872 Campylobacter jejuni RM1221 3231007 YP_178269.1 CDS CJE0246 NC_003912.7 224875 225852 D identified by similarity to OMNI:PSPTO3407; hypothetical protein 224875..225852 Campylobacter jejuni RM1221 3231008 YP_178270.1 CDS CJE0247 NC_003912.7 226028 226426 D identified by similarity to SP:O60488; hypothetical protein 226028..226426 Campylobacter jejuni RM1221 3231009 YP_178271.1 CDS CJE0248 NC_003912.7 226419 227018 D hypothetical protein 226419..227018 Campylobacter jejuni RM1221 3231010 YP_178272.1 CDS CJE0249 NC_003912.7 227105 228688 D identified by match to protein family HMM TIGR01630; phage uncharacterized protein 227105..228688 Campylobacter jejuni RM1221 3231011 YP_178273.1 CDS CJE0250 NC_003912.7 228698 230068 D hypothetical protein 228698..230068 Campylobacter jejuni RM1221 3231012 YP_178274.1 CDS CJE0251 NC_003912.7 230070 231308 D identified by similarity to SP:Q01259; match to protein family HMM PF04233; prophage MuSo1, F protein 230070..231308 Campylobacter jejuni RM1221 3231013 YP_178275.1 CDS CJE0252 NC_003912.7 231434 231808 D identified by similarity to GB:AAP04463.1; phage tail protein 231434..231808 Campylobacter jejuni RM1221 3231014 YP_178276.1 CDS CJE0253 NC_003912.7 231801 231992 D identified by similarity to GP:915369; match to protein family HMM PF05489; tail protein X 231801..231992 Campylobacter jejuni RM1221 3231015 YP_178277.1 CDS CJE0254 NC_003912.7 231986 232963 D identified by similarity to SP:P21679; tail protein D 231986..232963 Campylobacter jejuni RM1221 3231016 YP_178278.1 CDS CJE0255 NC_003912.7 232960 233244 R identified by similarity to SP:Q47588; DNA-binding protein complement(232960..233244) Campylobacter jejuni RM1221 3231017 YP_178279.1 CDS dns NC_003912.7 233338 234009 D identified by similarity to SP:P39658; match to protein family HMM PF04231; extracellular deoxyribonuclease 233338..234009 Campylobacter jejuni RM1221 3231018 YP_178280.1 CDS CJE0257 NC_003912.7 234001 234276 R identified by similarity to GP:4587560; hypothetical protein complement(234001..234276) Campylobacter jejuni RM1221 3231019 YP_178281.1 CDS CJE0258 NC_003912.7 234323 234772 R identified by similarity to GB:AAA32406.1; hypothetical protein complement(234323..234772) Campylobacter jejuni RM1221 3231020 YP_178282.1 CDS CJE0259 NC_003912.7 234769 235461 R hypothetical protein complement(234769..235461) Campylobacter jejuni RM1221 3231021 YP_178283.1 CDS CJE0260 NC_003912.7 235461 235730 R hypothetical protein complement(235461..235730) Campylobacter jejuni RM1221 3231022 YP_178284.1 CDS CJE0261 NC_003912.7 235727 236689 R hypothetical protein complement(235727..236689) Campylobacter jejuni RM1221 3231023 YP_178285.1 CDS CJE0262 NC_003912.7 236798 237184 R identified by similarity to PIR:AI1363; match to protein family HMM TIGR01671; hypothetical protein complement(236798..237184) Campylobacter jejuni RM1221 3231024 YP_178286.1 CDS CJE0263 NC_003912.7 237181 237453 R hypothetical protein complement(237181..237453) Campylobacter jejuni RM1221 3231025 YP_178287.1 CDS CJE0264 NC_003912.7 237517 237696 R hypothetical protein complement(237517..237696) Campylobacter jejuni RM1221 3231026 YP_178288.1 CDS CJE0265 NC_003912.7 237693 238178 R identified by similarity to SP:P06023; host-nuclease inhibitor protein Gam complement(237693..238178) Campylobacter jejuni RM1221 3231027 YP_178289.1 CDS CJE0266 NC_003912.7 238285 238626 R identified by similarity to OMNI:AF2353; hypothetical protein complement(238285..238626) Campylobacter jejuni RM1221 3231028 YP_178290.1 CDS CJE0267 NC_003912.7 238722 238907 R hypothetical protein complement(238722..238907) Campylobacter jejuni RM1221 3231029 YP_178291.1 CDS CJE0268 NC_003912.7 238891 239094 R hypothetical protein complement(238891..239094) Campylobacter jejuni RM1221 3231030 YP_178292.1 CDS CJE0269 NC_003912.7 239097 240020 R identified by similarity to SP:P03763; bacteriophage DNA transposition protein B complement(239097..240020) Campylobacter jejuni RM1221 3231031 YP_178293.1 CDS CJE0270 NC_003912.7 240090 242162 R identified by match to protein family HMM PF00665; bacteriophage DNA transposition protein A complement(240090..242162) Campylobacter jejuni RM1221 3231032 YP_178294.1 CDS CJE0271 NC_003912.7 242162 242362 R hypothetical protein complement(242162..242362) Campylobacter jejuni RM1221 3231033 YP_178295.1 CDS CJE0272 NC_003912.7 242507 243139 D identified by similarity to GB:AAL25916.1; match to protein family HMM PF00717; match to protein family HMM PF01381; transcriptional regulator 242507..243139 Campylobacter jejuni RM1221 3231034 YP_178296.1 CDS CJE0273 NC_003912.7 243155 244132 D hypothetical protein 243155..244132 Campylobacter jejuni RM1221 3231035 YP_178297.1 CDS argC NC_003912.7 244537 245565 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 244537..245565 Campylobacter jejuni RM1221 3231037 YP_178298.1 CDS CJE0276 NC_003912.7 245575 246021 D identified by match to protein family HMM PF00583; acetyltransferase 245575..246021 Campylobacter jejuni RM1221 3231038 YP_178299.1 CDS argB NC_003912.7 246031 246870 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 246031..246870 Campylobacter jejuni RM1221 3231039 YP_178300.1 CDS argD NC_003912.7 246880 248061 D identified by similarity to SP:P18544; match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine aminotransferase 246880..248061 Campylobacter jejuni RM1221 3231040 YP_178301.1 CDS pcm NC_003912.7 248081 248710 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(248081..248710) Campylobacter jejuni RM1221 3231041 YP_178302.1 CDS CJE0280 NC_003912.7 248799 249347 D identified by match to protein family HMM PF00132; hypothetical protein 248799..249347 Campylobacter jejuni RM1221 3231042 YP_178303.1 CDS CJE0281 NC_003912.7 249316 250686 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(249316..250686) Campylobacter jejuni RM1221 3231043 YP_178304.1 CDS nrdF NC_003912.7 250676 251698 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(250676..251698) Campylobacter jejuni RM1221 3231044 YP_178305.1 CDS CJE0283 NC_003912.7 251701 252123 R identified by similarity to OMNI:HP1258; hypothetical protein complement(251701..252123) Campylobacter jejuni RM1221 3231045 YP_178306.1 CDS pyrE NC_003912.7 252124 252732 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(252124..252732) Campylobacter jejuni RM1221 3231046 YP_178307.1 CDS frr NC_003912.7 252735 253292 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(252735..253292) Campylobacter jejuni RM1221 3231047 YP_178308.1 CDS secG NC_003912.7 253308 253679 R identified by similarity to SP:P33582; match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG complement(253308..253679) Campylobacter jejuni RM1221 3231048 YP_178309.1 CDS CJE0287 NC_003912.7 253783 254478 R identified by similarity to SP:O25578; match to protein family HMM PF01027; hypothetical protein complement(253783..254478) Campylobacter jejuni RM1221 3231049 YP_178310.1 CDS cynT NC_003912.7 254639 255274 D identified by similarity to SP:P17582; match to protein family HMM PF00484; carbonic anhydrase 254639..255274 Campylobacter jejuni RM1221 3231050 YP_178311.1 CDS CJE0289 NC_003912.7 255271 257154 D identified by similarity to SP:P77253; match to protein family HMM PF00924; mechanosensitive ion channel family protein 255271..257154 Campylobacter jejuni RM1221 3231051 YP_178312.1 CDS CJE0290 NC_003912.7 257177 258148 R identified by similarity to SP:P05343; match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; NifU family protein complement(257177..258148) Campylobacter jejuni RM1221 3231052 YP_178313.1 CDS CJE0291 NC_003912.7 258158 259339 R catalyzes the removal of sulfur from cysteine to form alanine; cysteine desulfurase complement(258158..259339) Campylobacter jejuni RM1221 3231053 YP_178314.1 CDS CJE0293 NC_003912.7 260051 261217 R identified by similarity to GP:23498399; hypothetical protein complement(260051..261217) Campylobacter jejuni RM1221 3231055 YP_178315.1 CDS rpmI NC_003912.7 261376 261567 D identified by similarity to SP:P55874; match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 261376..261567 Campylobacter jejuni RM1221 3231056 YP_178316.1 CDS rplT NC_003912.7 261661 262014 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 261661..262014 Campylobacter jejuni RM1221 3231057 YP_178317.1 CDS CJE0296 NC_003912.7 262073 262555 R identified by similarity to GP:27352453; hypothetical protein complement(262073..262555) Campylobacter jejuni RM1221 3231058 YP_178318.1 CDS CJE0298 NC_003912.7 263633 264490 D identified by similarity to GP:28203787; hypothetical protein 263633..264490 Campylobacter jejuni RM1221 3231060 YP_178319.1 CDS CJE0299 NC_003912.7 264521 264997 D hypothetical protein 264521..264997 Campylobacter jejuni RM1221 3231061 YP_178320.1 CDS CJE0300 NC_003912.7 264966 266276 R identified by match to protein family HMM PF00083; major facilitator superfamily protein complement(264966..266276) Campylobacter jejuni RM1221 3231062 YP_178321.1 CDS CJE0301 NC_003912.7 266260 266436 R hypothetical protein complement(266260..266436) Campylobacter jejuni RM1221 3231063 YP_178322.1 CDS moaC NC_003912.7 266529 267002 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 266529..267002 Campylobacter jejuni RM1221 3231064 YP_178323.1 CDS CJE0303 NC_003912.7 266980 267243 D identified by similarity to SP:O25237; hypothetical protein 266980..267243 Campylobacter jejuni RM1221 3231065 YP_178324.1 CDS CJE0304 NC_003912.7 267257 268393 D hypothetical protein 267257..268393 Campylobacter jejuni RM1221 3231066 YP_178325.1 CDS xth NC_003912.7 268412 269191 R identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III complement(268412..269191) Campylobacter jejuni RM1221 3231067 YP_178326.1 CDS CJE0306 NC_003912.7 269288 270826 D identified by match to protein family HMM PF00884; match to protein family HMM PF02418; sulfatase 269288..270826 Campylobacter jejuni RM1221 3231068 YP_178327.1 CDS dgkA NC_003912.7 270823 271179 D identified by similarity to SP:P00556; match to protein family HMM PF01219; diacylglycerol kinase 270823..271179 Campylobacter jejuni RM1221 3231069 YP_178328.1 CDS CJE0308 NC_003912.7 271176 271403 D hypothetical protein 271176..271403 Campylobacter jejuni RM1221 3231070 YP_178329.1 CDS pyrC NC_003912.7 271412 272407 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 271412..272407 Campylobacter jejuni RM1221 3231071 YP_178330.1 CDS CJE0310 NC_003912.7 272329 275679 D identified by similarity to OMNI:BBQ67; match to protein family HMM TIGR01612; D12 class N6 adenine-specific DNA methyltransferase 272329..275679 Campylobacter jejuni RM1221 3231072 YP_178331.1 CDS CJE0311 NC_003912.7 275685 276398 R hypothetical protein complement(275685..276398) Campylobacter jejuni RM1221 3231073 YP_178332.1 CDS CJE0312 NC_003912.7 276479 278467 R identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM PF05581; methyl-accepting chemotaxis protein complement(276479..278467) Campylobacter jejuni RM1221 3231074 YP_178333.1 CDS CJE0313 NC_003912.7 278663 279538 D identified by similarity to SP:P24198; match to protein family HMM PF02535; zinc transporter ZupT 278663..279538 Campylobacter jejuni RM1221 3231075 YP_178334.1 CDS CJE0314 NC_003912.7 279637 281616 R identified by similarity to OMNI:NTL01CJ00137; match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(279637..281616) Campylobacter jejuni RM1221 3231076 YP_178335.1 CDS CJE0315 NC_003912.7 281817 282326 R hypothetical protein complement(281817..282326) Campylobacter jejuni RM1221 3231077 YP_178336.1 CDS CJE0316 NC_003912.7 282326 282835 R hypothetical protein complement(282326..282835) Campylobacter jejuni RM1221 3231078 YP_178337.1 CDS CJE0317 NC_003912.7 282869 283957 R identified by similarity to OMNI:NTL01HP00232; match to protein family HMM PF01145; SPFH domain-containing protein complement(282869..283957) Campylobacter jejuni RM1221 3231079 YP_178338.1 CDS ilvE NC_003912.7 283970 284884 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(283970..284884) Campylobacter jejuni RM1221 3231080 YP_178339.1 CDS CJE0319 NC_003912.7 285060 285266 D identified by match to protein family HMM PF01361; 4-oxalocrotonate tautomerase 285060..285266 Campylobacter jejuni RM1221 3231081 YP_178340.1 CDS CJE0320 NC_003912.7 285263 285718 D identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 285263..285718 Campylobacter jejuni RM1221 3231082 YP_178341.1 CDS CJE0321 NC_003912.7 285718 286809 D identified by similarity to OMNI:NTL01AA00490; match to protein family HMM PF02677; hypothetical protein 285718..286809 Campylobacter jejuni RM1221 3231083 YP_178342.1 CDS fabZ NC_003912.7 286903 287343 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 286903..287343 Campylobacter jejuni RM1221 3231084 YP_178343.1 CDS lpxA NC_003912.7 287343 288134 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 287343..288134 Campylobacter jejuni RM1221 3231085 YP_178344.1 CDS clpX NC_003912.7 288127 289350 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 288127..289350 Campylobacter jejuni RM1221 3231086 YP_178345.1 CDS mreB NC_003912.7 289361 290401 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 289361..290401 Campylobacter jejuni RM1221 3231087 YP_178346.1 CDS CJE0326 NC_003912.7 290391 291140 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 290391..291140 Campylobacter jejuni RM1221 3231088 YP_178347.1 CDS carB NC_003912.7 291401 294670 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 291401..294670 Campylobacter jejuni RM1221 3231089 YP_178348.1 CDS CJE0328 NC_003912.7 294667 295089 D identified by similarity to OMNI:NTL01HP00845; hypothetical protein 294667..295089 Campylobacter jejuni RM1221 3231090 YP_178349.1 CDS tal NC_003912.7 295090 296067 R Important for the balance of metabolites in the pentose-phosphate pathway; transaldolase complement(295090..296067) Campylobacter jejuni RM1221 3231091 YP_178350.1 CDS serB NC_003912.7 296067 296690 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB complement(296067..296690) Campylobacter jejuni RM1221 3231092 YP_178351.1 CDS cheW NC_003912.7 296690 297211 R identified by similarity to SP:P39802; match to protein family HMM PF01584; chemotaxis protein CheW complement(296690..297211) Campylobacter jejuni RM1221 3231093 YP_178352.1 CDS cheA NC_003912.7 297216 299525 R identified by similarity to GP:3493635; match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis protein CheA complement(297216..299525) Campylobacter jejuni RM1221 3231094 YP_178353.1 CDS cheV NC_003912.7 299529 300485 R identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV complement(299529..300485) Campylobacter jejuni RM1221 3231095 YP_178354.1 CDS CJE0334 NC_003912.7 300478 301113 R identified by similarity to OMNI:HP0394; hypothetical protein complement(300478..301113) Campylobacter jejuni RM1221 3231096 YP_178355.1 CDS greA NC_003912.7 301246 301731 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(301246..301731) Campylobacter jejuni RM1221 3231097 YP_178356.1 CDS lpxB NC_003912.7 301743 302837 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(301743..302837) Campylobacter jejuni RM1221 3231098 YP_178357.1 CDS CJE0337 NC_003912.7 302934 303686 R identified by similarity to GP:558481; similarity to PIR:C41161; major antigenic peptide PEB3 complement(302934..303686) Campylobacter jejuni RM1221 3231099 YP_178358.1 CDS surE NC_003912.7 305377 306153 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 305377..306153 Campylobacter jejuni RM1221 3231101 YP_178359.1 CDS CJE0340 NC_003912.7 306146 306796 D identified by match to protein family HMM PF00899; thiF family protein 306146..306796 Campylobacter jejuni RM1221 3231102 YP_178360.1 CDS panD NC_003912.7 306871 307251 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(306871..307251) Campylobacter jejuni RM1221 3231103 YP_178361.1 CDS panC NC_003912.7 307248 308096 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(307248..308096) Campylobacter jejuni RM1221 3231104 YP_178362.1 CDS panB NC_003912.7 308107 308931 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(308107..308931) Campylobacter jejuni RM1221 3231105 YP_178363.1 CDS CJE0344 NC_003912.7 309148 309909 D identified by similarity to SP:P14489; match to protein family HMM PF00905; beta-lactamase 309148..309909 Campylobacter jejuni RM1221 3231106 YP_178364.1 CDS modC NC_003912.7 310007 310891 R identified by similarity to SP:P09833; match to protein family HMM PF00005; molybdenum ABC transporter ATP-binding protein complement(310007..310891) Campylobacter jejuni RM1221 3231107 YP_178365.1 CDS modB NC_003912.7 310901 311569 R identified by similarity to SP:P37731; match to protein family HMM PF00528; molybdenum ABC transporter permease complement(310901..311569) Campylobacter jejuni RM1221 3231108 YP_178366.1 CDS CJE0347 NC_003912.7 311562 311963 R identified by match to protein family HMM PF03459; TOBE domain-containing protein complement(311562..311963) Campylobacter jejuni RM1221 3231109 YP_178367.1 CDS modA NC_003912.7 311960 312709 R identified by similarity to SP:Q08383; match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdenum ABC transporter periplasmic molybdenum-binding protein complement(311960..312709) Campylobacter jejuni RM1221 3231110 YP_178368.1 CDS CJE0349 NC_003912.7 312763 313449 R identified by match to protein family HMM TIGR02072; biotin biosynthesis protein BioC complement(312763..313449) Campylobacter jejuni RM1221 3231111 YP_178369.1 CDS CJE0350 NC_003912.7 313446 314057 R identified by similarity to OMNI:NTL01PM1904; match to protein family HMM PF04301; hypothetical protein complement(313446..314057) Campylobacter jejuni RM1221 3231112 YP_178370.1 CDS bioF NC_003912.7 314054 315196 R identified by similarity to SP:P53556; match to protein family HMM PF00155; 8-amino-7-oxononanoate synthase complement(314054..315196) Campylobacter jejuni RM1221 3231113 YP_178371.1 CDS bioA NC_003912.7 315263 316546 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate transaminase 315263..316546 Campylobacter jejuni RM1221 3231114 YP_178372.1 CDS bioD NC_003912.7 316533 317138 R identified by match to protein family HMM TIGR00347; dethiobiotin synthetase complement(316533..317138) Campylobacter jejuni RM1221 3231115 YP_178373.1 CDS CJE0354 NC_003912.7 317148 317462 R identified by similarity to SP:P14319; match to protein family HMM PF00893; SMR family multidrug efflux pump complement(317148..317462) Campylobacter jejuni RM1221 3231116 YP_178374.1 CDS CJE0355 NC_003912.7 317465 317803 R identified by match to protein family HMM PF00893; SMR family multidrug efflux pump complement(317465..317803) Campylobacter jejuni RM1221 3231117 YP_178375.1 CDS rplY NC_003912.7 317935 318471 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 317935..318471 Campylobacter jejuni RM1221 3231118 YP_178376.1 CDS pth NC_003912.7 318468 319013 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 318468..319013 Campylobacter jejuni RM1221 3231119 YP_178377.1 CDS CJE0358 NC_003912.7 319015 320073 D identified by similarity to GP:12228593; match to protein family HMM PF03739; hypothetical protein 319015..320073 Campylobacter jejuni RM1221 3231120 YP_178378.1 CDS lysA NC_003912.7 320117 321325 D identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 320117..321325 Campylobacter jejuni RM1221 3231121 YP_178379.1 CDS CJE0360 NC_003912.7 321327 322094 D identified by match to protein family HMM TIGR01460; HAD family hydrolase 321327..322094 Campylobacter jejuni RM1221 3231122 YP_178380.1 CDS pheA NC_003912.7 322082 323155 D identified by similarity to OMNI:NTL01CJ00292; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807; chorismate mutase/prephenate dehydratase 322082..323155 Campylobacter jejuni RM1221 3231123 YP_178381.1 CDS hisC NC_003912.7 323145 324239 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 323145..324239 Campylobacter jejuni RM1221 3231124 YP_178382.1 CDS fliF NC_003912.7 324291 325973 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 324291..325973 Campylobacter jejuni RM1221 3231125 YP_178383.1 CDS fliG NC_003912.7 325973 327001 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 325973..327001 Campylobacter jejuni RM1221 3231126 YP_178384.1 CDS fliH NC_003912.7 327009 327839 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 327009..327839 Campylobacter jejuni RM1221 3231127 YP_178385.1 CDS dxs NC_003912.7 327832 329679 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 327832..329679 Campylobacter jejuni RM1221 3231128 YP_178386.1 CDS CJE0367 NC_003912.7 329765 330175 D identified by match to protein family HMM PF01475; FUR family transcriptional regulator 329765..330175 Campylobacter jejuni RM1221 3231129 YP_178387.1 CDS CJE0368 NC_003912.7 330221 331417 D hypothetical protein 330221..331417 Campylobacter jejuni RM1221 3231130 YP_178388.1 CDS ubiE NC_003912.7 331420 332127 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 331420..332127 Campylobacter jejuni RM1221 3231131 YP_178389.1 CDS xseA NC_003912.7 332124 333287 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 332124..333287 Campylobacter jejuni RM1221 3231132 YP_178390.1 CDS serC NC_003912.7 333297 334373 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 333297..334373 Campylobacter jejuni RM1221 3231133 YP_178391.1 CDS CJE0372 NC_003912.7 334370 334720 D identified by match to protein family HMM PF01042; endoribonuclease L-PSP family protein 334370..334720 Campylobacter jejuni RM1221 3231134 YP_178392.1 CDS fabH NC_003912.7 334717 335691 R FabH; beta-ketoacyl-ACP synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-ACP synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase III complement(334717..335691) Campylobacter jejuni RM1221 3231135 YP_178393.1 CDS plsX NC_003912.7 335684 336670 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(335684..336670) Campylobacter jejuni RM1221 3231136 YP_178394.1 CDS rpmF NC_003912.7 336676 336822 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(336676..336822) Campylobacter jejuni RM1221 3231137 YP_178395.1 CDS CJE0376 NC_003912.7 336846 337199 R identified by similarity to OMNI:HP0199; hypothetical protein complement(336846..337199) Campylobacter jejuni RM1221 3231138 YP_178396.1 CDS ndk NC_003912.7 337200 337613 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(337200..337613) Campylobacter jejuni RM1221 3231139 YP_178397.1 CDS CJE0378 NC_003912.7 337726 338010 R identified by similarity to GP:1518927; match to protein family HMM PF00037; ferredoxin, 4Fe-4S complement(337726..338010) Campylobacter jejuni RM1221 3231140 YP_178398.1 CDS CJE0379 NC_003912.7 338216 338812 D identified by similarity to OMNI:NTL01CJ00310; match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 338216..338812 Campylobacter jejuni RM1221 3231141 YP_178399.1 CDS flhB NC_003912.7 338931 340019 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 338931..340019 Campylobacter jejuni RM1221 3231142 YP_178400.1 CDS motB NC_003912.7 340025 340768 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(340025..340768) Campylobacter jejuni RM1221 3231143 YP_178401.1 CDS CJE0382 NC_003912.7 340771 341547 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(340771..341547) Campylobacter jejuni RM1221 3231144 YP_178402.1 CDS polA NC_003912.7 341564 344203 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(341564..344203) Campylobacter jejuni RM1221 3231145 YP_178403.1 CDS CJE0384 NC_003912.7 344367 345728 D identified by match to protein family HMM PF00083; major facilitator family transporter 344367..345728 Campylobacter jejuni RM1221 3231146 YP_178404.1 CDS CJE0385 NC_003912.7 345725 346732 D identified by match to protein family HMM PF01156; inosine-uridine preferring nucleoside hydrolase 345725..346732 Campylobacter jejuni RM1221 3231147 YP_178405.1 CDS CJE0386 NC_003912.7 346688 347131 R identified by similarity to OMNI:NTL01MM0466; hypothetical protein complement(346688..347131) Campylobacter jejuni RM1221 3231148 YP_178406.1 CDS CJE0387 NC_003912.7 347131 347727 R hypothetical protein complement(347131..347727) Campylobacter jejuni RM1221 3231149 YP_178407.1 CDS CJE0388 NC_003912.7 347708 348391 R hypothetical protein complement(347708..348391) Campylobacter jejuni RM1221 3231150 YP_178408.1 CDS CJE0389 NC_003912.7 348435 348986 R hypothetical protein complement(348435..348986) Campylobacter jejuni RM1221 3231151 YP_178409.1 CDS uvrA NC_003912.7 348988 351810 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(348988..351810) Campylobacter jejuni RM1221 3231152 YP_178410.1 CDS CJE0391 NC_003912.7 351883 352668 R identified by similarity to OMNI:NTL01HP00210; match to protein family HMM PF01925; hypothetical protein complement(351883..352668) Campylobacter jejuni RM1221 3231153 YP_178411.1 CDS CJE0392 NC_003912.7 352768 352881 D hypothetical protein 352768..352881 Campylobacter jejuni RM1221 3231154 YP_178412.1 CDS CJE0393 NC_003912.7 352896 352994 R hypothetical protein complement(352896..352994) Campylobacter jejuni RM1221 3231155 YP_178413.1 CDS trpE NC_003912.7 353084 354334 D identified by similarity to SP:Q02001; match to protein family HMM PF00425; anthranilate synthase component I 353084..354334 Campylobacter jejuni RM1221 3231156 YP_178414.1 CDS trpD NC_003912.7 354331 355932 D identified by similarity to SP:P00904; match to protein family HMM PF00117; match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM TIGR00566; match to protein family HMM TIGR01245; anthranilate synthase component II 354331..355932 Campylobacter jejuni RM1221 3231157 YP_178415.1 CDS trpF NC_003912.7 355919 356518 D identified by match to protein family HMM PF00697; N-(5'phosphoribosyl)anthranilate isomerase 355919..356518 Campylobacter jejuni RM1221 3231158 YP_178416.1 CDS trpB NC_003912.7 356515 357693 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 356515..357693 Campylobacter jejuni RM1221 3231159 YP_178417.1 CDS trpA NC_003912.7 357686 358435 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 357686..358435 Campylobacter jejuni RM1221 3231160 YP_178418.1 CDS CJE0399 NC_003912.7 358506 358928 D hypothetical protein 358506..358928 Campylobacter jejuni RM1221 3231161 YP_178419.1 CDS fliN NC_003912.7 358928 359236 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 358928..359236 Campylobacter jejuni RM1221 3231162 YP_178420.1 CDS CJE0401 NC_003912.7 359237 360034 D identified by similarity to GB:AAG29563.1; hypothetical protein 359237..360034 Campylobacter jejuni RM1221 3231163 YP_178421.1 CDS CJE0402 NC_003912.7 360031 361491 R identified by match to protein family HMM PF02541; Ppx/GppA family phosphatase complement(360031..361491) Campylobacter jejuni RM1221 3231164 YP_178422.1 CDS CJE0403 NC_003912.7 361491 361736 R identified by similarity to SP:P00208; match to protein family HMM PF00037; ferredoxin, 4Fe-4S complement(361491..361736) Campylobacter jejuni RM1221 3231165 YP_178423.1 CDS CJE0404 NC_003912.7 361849 362520 R identified by similarity to OMNI:NTL01HP00378; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(361849..362520) Campylobacter jejuni RM1221 3231166 YP_178424.1 CDS CJE0405 NC_003912.7 362599 362916 R identified by match to protein family HMM TIGR00526; FolB domain-containing protein complement(362599..362916) Campylobacter jejuni RM1221 3231167 YP_178425.1 CDS CJE0406 NC_003912.7 362901 363509 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY complement(362901..363509) Campylobacter jejuni RM1221 3231168 YP_178426.1 CDS ccpA-2 NC_003912.7 363710 364735 D identified by similarity to SP:P14532; match to protein family HMM PF03150; cytochrome C551 peroxidase 363710..364735 Campylobacter jejuni RM1221 3231169 YP_178427.1 CDS CJE0408 NC_003912.7 364719 364829 R hypothetical protein complement(364719..364829) Campylobacter jejuni RM1221 3231170 YP_178428.1 CDS glmM NC_003912.7 364829 366166 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 364829..366166 Campylobacter jejuni RM1221 3231171 YP_178429.1 CDS lspA NC_003912.7 366159 366629 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 366159..366629 Campylobacter jejuni RM1221 3231172 YP_178430.1 CDS CJE0411 NC_003912.7 366613 367065 D identified by similarity to SP:Q9ZJD5; match to protein family HMM PF03653; match to protein family HMM TIGR00701; hypothetical protein 366613..367065 Campylobacter jejuni RM1221 3231173 YP_178431.1 CDS CJE0412 NC_003912.7 367039 368409 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(367039..368409) Campylobacter jejuni RM1221 3231174 YP_178432.1 CDS CJE0413 NC_003912.7 368537 368788 D hypothetical protein 368537..368788 Campylobacter jejuni RM1221 3231175 YP_178433.1 CDS cmeC NC_003912.7 368811 370289 R identified by similarity to GP:18496808; match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system, outer membrane lipoprotein CmeC complement(368811..370289) Campylobacter jejuni RM1221 3231176 YP_178434.1 CDS cmeB NC_003912.7 370282 373404 R identified by similarity to GP:18496807; match to protein family HMM PF00873; match to protein family HMM TIGR00915; RND efflux system, inner membrane transporter CmeB complement(370282..373404) Campylobacter jejuni RM1221 3231177 YP_178435.1 CDS cmeA NC_003912.7 373404 374507 R identified by similarity to SP:P31223; similarity to GB:AAL74244.1; match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND efflux system, membrane fusion protein CmeA complement(373404..374507) Campylobacter jejuni RM1221 3231178 YP_178436.1 CDS CJE0417 NC_003912.7 374601 375233 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(374601..375233) Campylobacter jejuni RM1221 3231179 YP_178437.1 CDS CJE0418 NC_003912.7 375220 376596 R identified by match to protein family HMM PF00037; iron-sulfur cluster-binding domain-containing protein complement(375220..376596) Campylobacter jejuni RM1221 3231180 YP_178438.1 CDS rpsU NC_003912.7 376756 376968 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 376756..376968 Campylobacter jejuni RM1221 3231181 YP_178439.1 CDS CJE0420 NC_003912.7 377088 377693 D identified by similarity to GP:12228587; hypothetical protein 377088..377693 Campylobacter jejuni RM1221 3231182 YP_178440.1 CDS CJE0421 NC_003912.7 377703 378872 D identified by match to protein family HMM PF03738; glutathionylspermidine synthase 377703..378872 Campylobacter jejuni RM1221 3231183 YP_178441.1 CDS CJE0422 NC_003912.7 378875 379810 D Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 378875..379810 Campylobacter jejuni RM1221 3231184 YP_178442.1 CDS CJE0423 NC_003912.7 379800 380291 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 379800..380291 Campylobacter jejuni RM1221 3231185 YP_178443.1 CDS CJE0424 NC_003912.7 380300 380776 D lipoprotein 380300..380776 Campylobacter jejuni RM1221 3231186 YP_178444.1 CDS CJE0425 NC_003912.7 380787 381611 D hypothetical protein 380787..381611 Campylobacter jejuni RM1221 3231187 YP_178445.1 CDS CJE0426 NC_003912.7 381611 383323 D identified by match to protein family HMM PF00004; ATPase, AAA family protein 381611..383323 Campylobacter jejuni RM1221 3231188 YP_178446.1 CDS CJE0427 NC_003912.7 383288 383860 R identified by match to protein family HMM PF05252; hypothetical protein complement(383288..383860) Campylobacter jejuni RM1221 3231189 YP_178447.1 CDS CJE0428 NC_003912.7 383860 384753 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY complement(383860..384753) Campylobacter jejuni RM1221 3231190 YP_178448.1 CDS CJE0429 NC_003912.7 384809 385609 R hypothetical protein complement(384809..385609) Campylobacter jejuni RM1221 3231191 YP_178449.1 CDS pyrF NC_003912.7 385591 386430 R OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(385591..386430) Campylobacter jejuni RM1221 3231192 YP_178450.1 CDS nusB NC_003912.7 386427 386825 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(386427..386825) Campylobacter jejuni RM1221 3231193 YP_178451.1 CDS ribH NC_003912.7 386825 387289 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(386825..387289) Campylobacter jejuni RM1221 3231194 YP_178452.1 CDS kdsA NC_003912.7 387286 388101 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(387286..388101) Campylobacter jejuni RM1221 3231195 YP_178453.1 CDS CJE0434 NC_003912.7 388098 389030 R identified by similarity to SP:Q9ZJZ2; match to protein family HMM PF00892; integral membrane protein complement(388098..389030) Campylobacter jejuni RM1221 3231196 YP_178454.1 CDS engA NC_003912.7 389132 390514 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 389132..390514 Campylobacter jejuni RM1221 3231197 YP_178455.1 CDS aroK NC_003912.7 390501 390998 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 390501..390998 Campylobacter jejuni RM1221 3231198 YP_178456.1 CDS trpS NC_003912.7 390995 391954 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 390995..391954 Campylobacter jejuni RM1221 3231199 YP_178457.1 CDS serS NC_003912.7 391965 393200 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 391965..393200 Campylobacter jejuni RM1221 3231200 YP_178458.1 CDS CJE0439 NC_003912.7 393210 395672 D identified by match to protein family HMM PF00515; hypothetical protein 393210..395672 Campylobacter jejuni RM1221 3231201 YP_178459.1 CDS CJE0440 NC_003912.7 395703 396338 R identified by similarity to GP:25989709; hypothetical protein complement(395703..396338) Campylobacter jejuni RM1221 3231202 YP_178460.1 CDS pyk NC_003912.7 396436 397878 R identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase complement(396436..397878) Campylobacter jejuni RM1221 3231203 YP_178461.1 CDS CJE0442 NC_003912.7 397927 399273 R malate:quinone oxidoreductase complement(397927..399273) Campylobacter jejuni RM1221 3231204 YP_178462.1 CDS CJE0443 NC_003912.7 399391 400020 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(399391..400020) Campylobacter jejuni RM1221 3231205 YP_178463.1 CDS CJE0444 NC_003912.7 400007 400297 R tram-like protein complement(400007..400297) Campylobacter jejuni RM1221 3231206 YP_178464.1 CDS CJE0445 NC_003912.7 400294 401292 R identified by similarity to OMNI:NTL01HP00790; lipoprotein complement(400294..401292) Campylobacter jejuni RM1221 3231207 YP_178465.1 CDS CJE0446 NC_003912.7 401289 401867 R identified by similarity to OMNI:NTL01HP00791; hypothetical protein complement(401289..401867) Campylobacter jejuni RM1221 3231208 YP_178466.1 CDS gatC NC_003912.7 402011 402295 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 402011..402295 Campylobacter jejuni RM1221 3231209 YP_178467.1 CDS CJE0448 NC_003912.7 402363 402926 D identified by match to protein family HMM PF02674; cvpA family protein 402363..402926 Campylobacter jejuni RM1221 3231210 YP_178468.1 CDS fur NC_003912.7 402928 403401 D identified by similarity to SP:P06975; match to protein family HMM PF01475; ferric uptake regulation protein 402928..403401 Campylobacter jejuni RM1221 3231211 YP_178469.1 CDS lysS NC_003912.7 403402 404907 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 403402..404907 Campylobacter jejuni RM1221 3231212 YP_178470.1 CDS glyA NC_003912.7 404904 406148 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 404904..406148 Campylobacter jejuni RM1221 3231213 YP_178471.1 CDS CJE0452 NC_003912.7 406145 406690 D identified by similarity to OMNI:HP0184; hypothetical protein 406145..406690 Campylobacter jejuni RM1221 3231214 YP_178472.1 CDS CJE0453 NC_003912.7 406704 407540 D identified by similarity to GP:12228583; hypothetical protein 406704..407540 Campylobacter jejuni RM1221 3231215 YP_178473.1 CDS aroE NC_003912.7 407537 408325 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 407537..408325 Campylobacter jejuni RM1221 3231216 YP_178474.1 CDS CJE0455 NC_003912.7 408400 409299 R lipoprotein complement(408400..409299) Campylobacter jejuni RM1221 3231217 YP_178475.1 CDS lgt NC_003912.7 409389 410204 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 409389..410204 Campylobacter jejuni RM1221 3231218 YP_178476.1 CDS frdC NC_003912.7 410273 411055 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 410273..411055 Campylobacter jejuni RM1221 3231219 YP_178477.1 CDS frdA NC_003912.7 411039 413030 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 411039..413030 Campylobacter jejuni RM1221 3231220 YP_178478.1 CDS frdB NC_003912.7 413023 413748 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 413023..413748 Campylobacter jejuni RM1221 3231221 YP_178479.1 CDS CJE0460 NC_003912.7 413776 415962 D GTP-binding protein 413776..415962 Campylobacter jejuni RM1221 3231222 YP_178480.1 CDS CJE0461 NC_003912.7 416072 417781 D GTP-binding protein 416072..417781 Campylobacter jejuni RM1221 3231223 YP_178481.1 CDS CJE0462 NC_003912.7 417781 418485 D identified by similarity to GP:17864805; hypothetical protein 417781..418485 Campylobacter jejuni RM1221 3231224 YP_178482.1 CDS CJE0463 NC_003912.7 418621 419349 D identified by similarity to OMNI:NTL03PA02264; hypothetical protein 418621..419349 Campylobacter jejuni RM1221 3231225 YP_178483.1 CDS CJE0464 NC_003912.7 419351 421072 D oxidoreductase 419351..421072 Campylobacter jejuni RM1221 3231226 YP_178484.1 CDS CJE0465 NC_003912.7 421045 421155 R hypothetical protein complement(421045..421155) Campylobacter jejuni RM1221 3231227 YP_178485.1 CDS CJE0466 NC_003912.7 421278 421973 D hypothetical protein 421278..421973 Campylobacter jejuni RM1221 3231228 YP_178486.1 CDS CJE0467 NC_003912.7 422080 422784 R hypothetical protein complement(422080..422784) Campylobacter jejuni RM1221 3231229 YP_178487.1 CDS CJE0468 NC_003912.7 422892 423254 D identified by match to protein family HMM PF01230; HIT family protein 422892..423254 Campylobacter jejuni RM1221 3231230 YP_178488.1 CDS CJE0469 NC_003912.7 423328 423900 D identified by similarity to OMNI:HP1286; match to protein family HMM PF04264; hypothetical protein 423328..423900 Campylobacter jejuni RM1221 3231231 YP_178489.1 CDS CJE0470 NC_003912.7 423905 424861 R identified by similarity to OMNI:VCA0560; hypothetical protein complement(423905..424861) Campylobacter jejuni RM1221 3231232 YP_178490.1 CDS CJE0471 NC_003912.7 424922 425131 R hypothetical protein complement(424922..425131) Campylobacter jejuni RM1221 3231233 YP_178491.1 CDS CJE0472 NC_003912.7 425298 425717 D hypothetical protein 425298..425717 Campylobacter jejuni RM1221 3231234 YP_178492.1 CDS CJE0473 NC_003912.7 425760 426020 D hypothetical protein 425760..426020 Campylobacter jejuni RM1221 3231235 YP_178493.1 CDS CJE0474 NC_003912.7 426020 426553 D lipoprotein 426020..426553 Campylobacter jejuni RM1221 3231236 YP_178494.1 CDS CJE0475 NC_003912.7 426676 428253 D identified by similarity to SP:P75790; match to protein family HMM PF00005; ABC transporter ATP-binding protein 426676..428253 Campylobacter jejuni RM1221 3231237 YP_178495.1 CDS CJE0476 NC_003912.7 428246 428578 D hypothetical protein 428246..428578 Campylobacter jejuni RM1221 3231238 YP_178496.1 CDS CJE0477 NC_003912.7 428655 429038 D identified by similarity to GP:552054; hypothetical protein 428655..429038 Campylobacter jejuni RM1221 3231239 YP_178497.1 CDS CJE0478 NC_003912.7 429082 429666 R identified by similarity to OMNI:HP1485; match to protein family HMM PF01205; hypothetical protein complement(429082..429666) Campylobacter jejuni RM1221 3231240 YP_178498.1 CDS CJE0479 NC_003912.7 429669 429782 D hypothetical protein 429669..429782 Campylobacter jejuni RM1221 3232506 YP_178499.1 CDS CJE0480 NC_003912.7 429793 431019 D identified by similarity to OMNI:NTL01HP01148; hypothetical protein 429793..431019 Campylobacter jejuni RM1221 3231241 YP_178500.1 CDS CJE0481 NC_003912.7 431012 431749 D hypothetical protein 431012..431749 Campylobacter jejuni RM1221 3231242 YP_178501.1 CDS murD NC_003912.7 438113 439321 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(438113..439321) Campylobacter jejuni RM1221 3231243 YP_178502.1 CDS mraY NC_003912.7 439321 440382 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(439321..440382) Campylobacter jejuni RM1221 3231244 YP_178503.1 CDS pgm NC_003912.7 440462 441940 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 440462..441940 Campylobacter jejuni RM1221 3231245 YP_178504.1 CDS fabG NC_003912.7 442012 442755 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 442012..442755 Campylobacter jejuni RM1221 3231246 YP_178505.1 CDS CJE0486 NC_003912.7 442765 443172 D identified by similarity to OMNI:NTL01FN0973; hypothetical protein 442765..443172 Campylobacter jejuni RM1221 3231247 YP_178506.1 CDS CJE0487 NC_003912.7 443391 443486 D hypothetical protein 443391..443486 Campylobacter jejuni RM1221 3231248 YP_178507.1 CDS sdhA NC_003912.7 443615 445345 D identified by match to protein family HMM PF00890; match to protein family HMM PF02910; succinate dehydrogenase, flavoprotein subunit 443615..445345 Campylobacter jejuni RM1221 3231249 YP_178508.1 CDS sdhB NC_003912.7 445342 446307 D identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384; succinate dehydrogenase, iron-sulfur protein subunit 445342..446307 Campylobacter jejuni RM1221 3231250 YP_178509.1 CDS sdhC NC_003912.7 446311 447168 D identified by similarity to GP:3378542; match to protein family HMM PF02754; succinate dehydrogenase, C subunit 446311..447168 Campylobacter jejuni RM1221 3231251 YP_178510.1 CDS CJE0491 NC_003912.7 447192 447857 R identified by match to protein family HMM PF03070; TenA/Thi-4 family protein complement(447192..447857) Campylobacter jejuni RM1221 3231252 YP_178511.1 CDS CJE0492 NC_003912.7 447835 447951 D hypothetical protein 447835..447951 Campylobacter jejuni RM1221 3231253 YP_178512.1 CDS acpP NC_003912.7 447970 448203 D carries the fatty acid chain in fatty acid biosynthesis; ACP 447970..448203 Campylobacter jejuni RM1221 3231254 YP_178513.1 CDS fabF NC_003912.7 448230 449444 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase II 448230..449444 Campylobacter jejuni RM1221 3231255 YP_178514.1 CDS accA NC_003912.7 449446 450384 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 449446..450384 Campylobacter jejuni RM1221 3231256 YP_178515.1 CDS CJE0497 NC_003912.7 452673 453269 D identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; NUDIX domain-containing protein 452673..453269 Campylobacter jejuni RM1221 3231258 YP_178516.1 CDS CJE0498 NC_003912.7 453301 454398 R identified by similarity to GP:1840146; match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(453301..454398) Campylobacter jejuni RM1221 3231259 YP_178517.1 CDS CJE0499 NC_003912.7 454408 454623 R identified by similarity to OMNI:NTL01CJ00422; match to protein family HMM PF04325; hypothetical protein complement(454408..454623) Campylobacter jejuni RM1221 3231260 YP_178518.1 CDS rpmB NC_003912.7 454808 455002 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(454808..455002) Campylobacter jejuni RM1221 3231261 YP_178519.1 CDS rpe NC_003912.7 455142 455789 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 455142..455789 Campylobacter jejuni RM1221 3231262 YP_178520.1 CDS CJE0502 NC_003912.7 455855 456556 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 455855..456556 Campylobacter jejuni RM1221 3231263 YP_178521.1 CDS thiC NC_003912.7 456731 458023 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 456731..458023 Campylobacter jejuni RM1221 3231264 YP_178522.1 CDS CJE0504 NC_003912.7 458015 458533 R hypothetical protein complement(458015..458533) Campylobacter jejuni RM1221 3231265 YP_178523.1 CDS CJE0505 NC_003912.7 458523 459050 R identified by similarity to GP:12228461; hypothetical protein complement(458523..459050) Campylobacter jejuni RM1221 3231266 YP_178524.1 CDS CJE0506 NC_003912.7 459047 460006 R hypothetical protein complement(459047..460006) Campylobacter jejuni RM1221 3231267 YP_178525.1 CDS CJE0507 NC_003912.7 460008 460658 R identified by similarity to OMNI:NTL01HP00254; match to protein family HMM PF04028; hypothetical protein complement(460008..460658) Campylobacter jejuni RM1221 3231268 YP_178526.1 CDS miaB NC_003912.7 460621 461922 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(460621..461922) Campylobacter jejuni RM1221 3231269 YP_178527.1 CDS CJE0509 NC_003912.7 461919 462161 R identified by similarity to OMNI:NTL01HP00252; hypothetical protein complement(461919..462161) Campylobacter jejuni RM1221 3231270 YP_178528.1 CDS nusA NC_003912.7 462289 463377 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 462289..463377 Campylobacter jejuni RM1221 3231271 YP_178529.1 CDS CJE0511 NC_003912.7 463393 464580 R identified by similarity to GP:2613096; similarity to OMNI:CT0102; match to protein family HMM PF04332; transporter complement(463393..464580) Campylobacter jejuni RM1221 3231272 YP_178530.1 CDS CJE0512 NC_003912.7 464655 465701 D identified by similarity to GB:AAP77588.1; match to protein family HMM PF04055; match to protein family HMM TIGR00423; hypothetical protein 464655..465701 Campylobacter jejuni RM1221 3231273 YP_178531.1 CDS CJE0513 NC_003912.7 465701 466921 D identified by match to protein family HMM PF05193; peptidase 465701..466921 Campylobacter jejuni RM1221 3231274 YP_178532.1 CDS recG NC_003912.7 466911 468734 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 466911..468734 Campylobacter jejuni RM1221 3231275 YP_178533.1 CDS CJE0515 NC_003912.7 468731 469114 R identified by similarity to GB:AAP76761.1; hypothetical protein complement(468731..469114) Campylobacter jejuni RM1221 3231276 YP_178534.1 CDS CJE0516 NC_003912.7 469210 469806 D identified by similarity to GP:4585799; match to protein family HMM PF00027; transcriptional regulator 469210..469806 Campylobacter jejuni RM1221 3231277 YP_178535.1 CDS CJE0517 NC_003912.7 469822 470523 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 469822..470523 Campylobacter jejuni RM1221 3231278 YP_178536.1 CDS CJE0518 NC_003912.7 470516 471172 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 470516..471172 Campylobacter jejuni RM1221 3231279 YP_178537.1 CDS CJE0519 NC_003912.7 471174 471911 D identified by similarity to SP:P48243; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 471174..471911 Campylobacter jejuni RM1221 3231280 YP_178538.1 CDS tuf NC_003912.7 472565 473764 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 472565..473764 Campylobacter jejuni RM1221 3231281 YP_178539.1 CDS rpmG NC_003912.7 473817 473975 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 473817..473975 Campylobacter jejuni RM1221 3231282 YP_178540.1 CDS secE NC_003912.7 474082 474261 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 474082..474261 Campylobacter jejuni RM1221 3231283 YP_178541.1 CDS nusG NC_003912.7 474271 474804 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 474271..474804 Campylobacter jejuni RM1221 3231284 YP_178542.1 CDS rplK NC_003912.7 474830 475255 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 474830..475255 Campylobacter jejuni RM1221 3231285 YP_178543.1 CDS rplA NC_003912.7 475310 476011 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 475310..476011 Campylobacter jejuni RM1221 3231286 YP_178544.1 CDS rplJ NC_003912.7 476163 476642 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 476163..476642 Campylobacter jejuni RM1221 3231287 YP_178545.1 CDS rplL NC_003912.7 476663 477040 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 476663..477040 Campylobacter jejuni RM1221 3231288 YP_178546.1 CDS rpoB NC_003912.7 477149 481285 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 477149..481285 Campylobacter jejuni RM1221 3231289 YP_178547.1 CDS rpoC NC_003912.7 481278 485831 D identified by similarity to SP:O83270; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR01369; match to protein family HMM TIGR01612; DNA-directed RNA polymerase, beta' subunit 481278..485831 Campylobacter jejuni RM1221 3231290 YP_178548.1 CDS CJE0530 NC_003912.7 485862 486623 R identified by match to protein family HMM PF01614; IclR family transcriptional regulator complement(485862..486623) Campylobacter jejuni RM1221 3231291 YP_178549.1 CDS CJE0531 NC_003912.7 486631 486771 R hypothetical protein complement(486631..486771) Campylobacter jejuni RM1221 3231292 YP_178550.1 CDS CJE0532 NC_003912.7 486853 487761 D identified by similarity to SP:Q04796; match to protein family HMM PF00701; dihydrodipicolinate synthase 486853..487761 Campylobacter jejuni RM1221 3231293 YP_178551.1 CDS CJE0534 NC_003912.7 489202 490488 D identified by similarity to SP:Q44470; match to protein family HMM PF00083; tartrate transporter 489202..490488 Campylobacter jejuni RM1221 3231295 YP_178552.1 CDS CJE0535 NC_003912.7 490489 491277 D identified by match to protein family HMM PF00106; short chain dehydrogenase 490489..491277 Campylobacter jejuni RM1221 3231296 YP_178553.1 CDS fucP NC_003912.7 491288 492544 D identified by match to protein family HMM PF00083; match to protein family HMM TIGR00885; L-fucose permease 491288..492544 Campylobacter jejuni RM1221 3231297 YP_178554.1 CDS CJE0537 NC_003912.7 492528 493298 D identified by similarity to OMNI:NTL01CJ00461; hypothetical protein 492528..493298 Campylobacter jejuni RM1221 3231298 YP_178555.1 CDS CJE0538 NC_003912.7 493299 493616 D identified by similarity to OMNI:NTL01CJ00462; match to protein family HMM PF05336; hypothetical protein 493299..493616 Campylobacter jejuni RM1221 3231299 YP_178556.1 CDS aldA NC_003912.7 493630 495069 D NAD-linked; aldehyde dehydrogenase A 493630..495069 Campylobacter jejuni RM1221 3231300 YP_178557.1 CDS rpsL NC_003912.7 495397 495783 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 495397..495783 Campylobacter jejuni RM1221 3231301 YP_178558.1 CDS rpsG NC_003912.7 495853 496323 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 495853..496323 Campylobacter jejuni RM1221 3231302 YP_178559.1 CDS fusA NC_003912.7 496336 498411 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 496336..498411 Campylobacter jejuni RM1221 3231303 YP_178560.1 CDS CJE0544 NC_003912.7 498700 499902 D identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 498700..499902 Campylobacter jejuni RM1221 3231304 YP_178561.1 CDS CJE0545 NC_003912.7 499899 500069 R identified by match to protein family HMM TIGR01764; DNA binding domain-containing protein complement(499899..500069) Campylobacter jejuni RM1221 3231305 YP_178562.1 CDS CJE0546 NC_003912.7 500062 500604 R identified by match to protein family HMM PF00805; hypothetical protein complement(500062..500604) Campylobacter jejuni RM1221 3231306 YP_178563.1 CDS CJE0547 NC_003912.7 500614 500805 R hypothetical protein complement(500614..500805) Campylobacter jejuni RM1221 3231307 YP_178564.1 CDS CJE0548 NC_003912.7 501182 501799 R identified by similarity to GB:AAM53132.1; phage anti-repressor protein complement(501182..501799) Campylobacter jejuni RM1221 3231308 YP_178565.1 CDS CJE0549 NC_003912.7 501935 502330 R hypothetical protein complement(501935..502330) Campylobacter jejuni RM1221 3231309 YP_178566.1 CDS CJE0550 NC_003912.7 502374 503126 R identified by similarity to GB:CAA65779.1; match to protein family HMM PF01555; site-specific DNA-methyltransferase complement(502374..503126) Campylobacter jejuni RM1221 3231310 YP_178567.1 CDS CJE0551 NC_003912.7 503107 503547 R identified by similarity to OMNI:NTL01LI2568; hypothetical protein complement(503107..503547) Campylobacter jejuni RM1221 3231311 YP_178568.1 CDS CJE0552 NC_003912.7 503622 503732 R hypothetical protein complement(503622..503732) Campylobacter jejuni RM1221 3231312 YP_178569.1 CDS CJE0553 NC_003912.7 503790 504053 R hypothetical protein complement(503790..504053) Campylobacter jejuni RM1221 3231313 YP_178570.1 CDS CJE0554 NC_003912.7 504034 504729 R hypothetical protein complement(504034..504729) Campylobacter jejuni RM1221 3231314 YP_178571.1 CDS CJE0555 NC_003912.7 504729 505466 R hypothetical protein complement(504729..505466) Campylobacter jejuni RM1221 3231315 YP_178572.1 CDS CJE0556 NC_003912.7 505468 506322 R hypothetical protein complement(505468..506322) Campylobacter jejuni RM1221 3231316 YP_178573.1 CDS CJE0557 NC_003912.7 506324 506551 R identified by similarity to GP:9944309; hypothetical protein complement(506324..506551) Campylobacter jejuni RM1221 3231317 YP_178574.1 CDS CJE0558 NC_003912.7 506542 506799 R hypothetical protein complement(506542..506799) Campylobacter jejuni RM1221 3231318 YP_178575.1 CDS CJE0559 NC_003912.7 506790 507059 R hypothetical protein complement(506790..507059) Campylobacter jejuni RM1221 3231319 YP_178576.1 CDS CJE0560 NC_003912.7 507286 507393 R hypothetical protein complement(507286..507393) Campylobacter jejuni RM1221 3231320 YP_178577.1 CDS CJE0561 NC_003912.7 507621 507893 R hypothetical protein complement(507621..507893) Campylobacter jejuni RM1221 3231321 YP_178578.1 CDS CJE0562 NC_003912.7 508148 508843 D identified by similarity to OMNI:CT1793; hypothetical protein 508148..508843 Campylobacter jejuni RM1221 3231322 YP_178579.1 CDS CJE0563 NC_003912.7 508862 509233 R hypothetical protein complement(508862..509233) Campylobacter jejuni RM1221 3231323 YP_178580.1 CDS CJE0564 NC_003912.7 509223 509756 R hypothetical protein complement(509223..509756) Campylobacter jejuni RM1221 3231324 YP_178581.1 CDS CJE0565 NC_003912.7 509753 510418 R hypothetical protein complement(509753..510418) Campylobacter jejuni RM1221 3231325 YP_178582.1 CDS CJE0566 NC_003912.7 510498 511151 R identified by similarity to GP:27359896; match to protein family HMM PF01223; DNA/RNA non-specific endonuclease complement(510498..511151) Campylobacter jejuni RM1221 3231326 YP_178583.1 CDS CJE0567 NC_003912.7 511157 511849 R hypothetical protein complement(511157..511849) Campylobacter jejuni RM1221 3231327 YP_178584.1 CDS CJE0568 NC_003912.7 511857 512645 R identified by similarity to GP:29337437; hypothetical protein complement(511857..512645) Campylobacter jejuni RM1221 3231328 YP_178585.1 CDS CJE0569 NC_003912.7 512642 513376 R identified by similarity to GB:AAN53719.1; match to protein family HMM PF00717; phage repressor protein complement(512642..513376) Campylobacter jejuni RM1221 3231329 YP_178586.1 CDS CJE0570 NC_003912.7 513488 513712 D hypothetical protein 513488..513712 Campylobacter jejuni RM1221 3231330 YP_178587.1 CDS CJE0571 NC_003912.7 513709 514137 D hypothetical protein 513709..514137 Campylobacter jejuni RM1221 3231331 YP_178588.1 CDS CJE0572 NC_003912.7 514134 514511 D lipoprotein 514134..514511 Campylobacter jejuni RM1221 3231332 YP_178589.1 CDS CJE0573 NC_003912.7 514508 515509 D hypothetical protein 514508..515509 Campylobacter jejuni RM1221 3231333 YP_178590.1 CDS CJE0574 NC_003912.7 515520 516167 D hypothetical protein 515520..516167 Campylobacter jejuni RM1221 3231334 YP_178591.1 CDS CJE0575 NC_003912.7 516185 516565 D hypothetical protein 516185..516565 Campylobacter jejuni RM1221 3231335 YP_178592.1 CDS CJE0576 NC_003912.7 516565 516951 D identified by similarity to SP:Q9T1T1; hypothetical protein 516565..516951 Campylobacter jejuni RM1221 3231336 YP_178593.1 CDS CJE0577 NC_003912.7 516948 518240 D identified by similarity to SP:P27753; terminase B protein 516948..518240 Campylobacter jejuni RM1221 3231337 YP_178594.1 CDS CJE0578 NC_003912.7 518230 518502 D hypothetical protein 518230..518502 Campylobacter jejuni RM1221 3231338 YP_178595.1 CDS CJE0579 NC_003912.7 518483 520021 D hypothetical protein 518483..520021 Campylobacter jejuni RM1221 3231339 YP_178596.1 CDS CJE0580 NC_003912.7 520014 520217 D hypothetical protein 520014..520217 Campylobacter jejuni RM1221 3231340 YP_178597.1 CDS CJE0581 NC_003912.7 520207 520854 D hypothetical protein 520207..520854 Campylobacter jejuni RM1221 3231341 YP_178598.1 CDS CJE0582 NC_003912.7 520865 521242 D hypothetical protein 520865..521242 Campylobacter jejuni RM1221 3231342 YP_178599.1 CDS CJE0583 NC_003912.7 521507 522718 D hypothetical protein 521507..522718 Campylobacter jejuni RM1221 3231343 YP_178600.1 CDS CJE0584 NC_003912.7 522718 526419 D hypothetical protein 522718..526419 Campylobacter jejuni RM1221 3231344 YP_178601.1 CDS CJE0585 NC_003912.7 526698 527543 R hypothetical protein complement(526698..527543) Campylobacter jejuni RM1221 3231345 YP_178602.1 CDS CJE0586 NC_003912.7 527553 527759 R hypothetical protein complement(527553..527759) Campylobacter jejuni RM1221 3231346 YP_178603.1 CDS CJE0587 NC_003912.7 527979 529013 D hypothetical protein 527979..529013 Campylobacter jejuni RM1221 3231347 YP_178604.1 CDS CJE0588 NC_003912.7 529013 529417 D hypothetical protein 529013..529417 Campylobacter jejuni RM1221 3231348 YP_178605.1 CDS CJE0589 NC_003912.7 529395 529592 D hypothetical protein 529395..529592 Campylobacter jejuni RM1221 3231349 YP_178606.1 CDS CJE0590 NC_003912.7 529595 532237 D hypothetical protein 529595..532237 Campylobacter jejuni RM1221 3231350 YP_178607.1 CDS CJE0591 NC_003912.7 532338 532688 D hypothetical protein 532338..532688 Campylobacter jejuni RM1221 3231351 YP_178608.1 CDS CJE0592 NC_003912.7 532701 533336 D hypothetical protein 532701..533336 Campylobacter jejuni RM1221 3231352 YP_178609.1 CDS CJE0593 NC_003912.7 533333 533716 D hypothetical protein 533333..533716 Campylobacter jejuni RM1221 3231353 YP_178610.1 CDS CJE0594 NC_003912.7 533709 534083 D identified by similarity to OMNI:NTL03ST1666; hypothetical protein 533709..534083 Campylobacter jejuni RM1221 3231354 YP_178611.1 CDS CJE0595 NC_003912.7 534080 535360 D hypothetical protein 534080..535360 Campylobacter jejuni RM1221 3231355 YP_178612.1 CDS CJE0596 NC_003912.7 535302 535409 D hypothetical protein 535302..535409 Campylobacter jejuni RM1221 3232507 YP_178613.1 CDS CJE0597 NC_003912.7 535409 535867 D hypothetical protein 535409..535867 Campylobacter jejuni RM1221 3231356 YP_178614.1 CDS CJE0598 NC_003912.7 535929 536348 D hypothetical protein 535929..536348 Campylobacter jejuni RM1221 3232078 YP_178615.1 CDS CJE0599 NC_003912.7 536266 536463 D hypothetical protein 536266..536463 Campylobacter jejuni RM1221 3232508 YP_178616.1 CDS CJE0600 NC_003912.7 536456 536947 D hypothetical protein 536456..536947 Campylobacter jejuni RM1221 3232077 YP_178617.1 CDS CJE0601 NC_003912.7 537061 538671 D hypothetical protein 537061..538671 Campylobacter jejuni RM1221 3232076 YP_178618.1 CDS CJE0602 NC_003912.7 538788 538937 D hypothetical protein 538788..538937 Campylobacter jejuni RM1221 3232075 YP_178619.1 CDS CJE0603 NC_003912.7 538943 539644 D identified by similarity to OMNI:NTL01HP01386; hypothetical protein 538943..539644 Campylobacter jejuni RM1221 3232074 YP_178620.1 CDS CJE0604 NC_003912.7 539634 540008 D identified by similarity to SP:P56132; match to protein family HMM PF03692; hypothetical protein 539634..540008 Campylobacter jejuni RM1221 3232073 YP_178621.1 CDS CJE0605 NC_003912.7 539981 541258 D identified by similarity to OMNI:NTL01HP00259; lipoprotein 539981..541258 Campylobacter jejuni RM1221 3232072 YP_178622.1 CDS trpC NC_003912.7 541255 542031 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 541255..542031 Campylobacter jejuni RM1221 3232071 YP_178623.1 CDS CJE0607 NC_003912.7 542041 542526 D identified by match to protein family HMM PF01230; Hit family protein 542041..542526 Campylobacter jejuni RM1221 3232070 YP_178624.1 CDS CJE0608 NC_003912.7 542516 543514 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 542516..543514 Campylobacter jejuni RM1221 3232069 YP_178625.1 CDS hemH NC_003912.7 545084 545995 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(545084..545995) Campylobacter jejuni RM1221 3232067 YP_178626.1 CDS CJE0611 NC_003912.7 545992 546858 R identified by match to protein family HMM PF01408; Gfo/Idh/MocA family oxidoreductase complement(545992..546858) Campylobacter jejuni RM1221 3232066 YP_178627.1 CDS CJE0612 NC_003912.7 546863 547936 R identified by match to protein family HMM PF01041; DegT/DnrJ/EryC1/StrS aminotransferase complement(546863..547936) Campylobacter jejuni RM1221 3232065 YP_178628.1 CDS alaS NC_003912.7 548051 550579 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 548051..550579 Campylobacter jejuni RM1221 3232064 YP_178629.1 CDS maf NC_003912.7 550579 551130 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 550579..551130 Campylobacter jejuni RM1221 3232063 YP_178630.1 CDS pbpA NC_003912.7 551127 553058 D identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin-binding protein 1A 551127..553058 Campylobacter jejuni RM1221 3232062 YP_178631.1 CDS clpB NC_003912.7 553086 555659 R identified by similarity to SP:Q9RA63; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent chaperone protein ClpB complement(553086..555659) Campylobacter jejuni RM1221 3232061 YP_178632.1 CDS CJE0617 NC_003912.7 555771 556061 R identified by similarity to OMNI:NTL01TE1575; match to protein family HMM PF02583; hypothetical protein complement(555771..556061) Campylobacter jejuni RM1221 3232060 YP_178633.1 CDS ctpA NC_003912.7 556188 557522 D identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 556188..557522 Campylobacter jejuni RM1221 3232059 YP_178634.1 CDS purC NC_003912.7 557524 558234 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 557524..558234 Campylobacter jejuni RM1221 3232058 YP_178635.1 CDS purS NC_003912.7 558243 558488 D identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, purS protein 558243..558488 Campylobacter jejuni RM1221 3232057 YP_178636.1 CDS purQ NC_003912.7 558490 559137 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 558490..559137 Campylobacter jejuni RM1221 3232056 YP_178637.1 CDS CJE0622 NC_003912.7 559221 560330 D identified by similarity to OMNI:NTL01HP01259; hypothetical protein 559221..560330 Campylobacter jejuni RM1221 3232055 YP_178638.1 CDS CJE0623 NC_003912.7 560311 561003 D identified by similarity to SP:O25903; match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase 560311..561003 Campylobacter jejuni RM1221 3232054 YP_178639.1 CDS CJE0624 NC_003912.7 560997 561365 D identified by similarity to SP:P37002; match to protein family HMM PF02537; match to protein family HMM TIGR00494; hypothetical protein 560997..561365 Campylobacter jejuni RM1221 3232053 YP_178640.1 CDS htpG NC_003912.7 561438 563264 D molecular chaperone; heat shock protein 90 561438..563264 Campylobacter jejuni RM1221 3232052 YP_178641.1 CDS CJE0626 NC_003912.7 563261 563578 D identified by similarity to OMNI:NTL01OI2305; hypothetical protein 563261..563578 Campylobacter jejuni RM1221 3232051 YP_178642.1 CDS CJE0627 NC_003912.7 563578 564012 D hypothetical protein 563578..564012 Campylobacter jejuni RM1221 3232050 YP_178643.1 CDS CJE0628 NC_003912.7 564133 565785 D identified by match to protein family HMM PF02690; Na/Pi-cotransporter 564133..565785 Campylobacter jejuni RM1221 3232049 YP_178644.1 CDS CJE0629 NC_003912.7 565800 567539 R identified by similarity to SP:P08149; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein complement(565800..567539) Campylobacter jejuni RM1221 3232048 YP_178645.1 CDS fliE NC_003912.7 567597 567893 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(567597..567893) Campylobacter jejuni RM1221 3232047 YP_178646.1 CDS flgC NC_003912.7 567900 568394 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(567900..568394) Campylobacter jejuni RM1221 3232046 YP_178647.1 CDS flgB NC_003912.7 568404 568835 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB complement(568404..568835) Campylobacter jejuni RM1221 3232045 YP_178648.1 CDS CJE0633 NC_003912.7 568915 569817 R identified by similarity to GB:AAP78169.1; match to protein family HMM PF02618; hypothetical protein complement(568915..569817) Campylobacter jejuni RM1221 3232044 YP_178649.1 CDS CJE0634 NC_003912.7 569831 572401 D identified by similarity to OMNI:HP0586; hypothetical protein 569831..572401 Campylobacter jejuni RM1221 3232043 YP_178650.1 CDS icd NC_003912.7 572518 574722 D identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178; isocitrate dehydrogenase, NADP-dependent 572518..574722 Campylobacter jejuni RM1221 3232042 YP_178651.1 CDS mdh NC_003912.7 574719 575621 D identified by similarity to SP:P49814; match to protein family HMM PF00056; match to protein family HMM PF02866; malate dehydrogenase 574719..575621 Campylobacter jejuni RM1221 3232041 YP_178652.1 CDS sucC NC_003912.7 575622 576785 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 575622..576785 Campylobacter jejuni RM1221 3232040 YP_178653.1 CDS sucD NC_003912.7 576795 577664 D identified by similarity to SP:P07459; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthase, alpha subunit 576795..577664 Campylobacter jejuni RM1221 3232039 YP_178654.1 CDS oorD NC_003912.7 577678 577989 D identified by similarity to GP:2935178; match to protein family HMM PF00037; 2-oxoglutarate-acceptor oxidoreductase subunit OorD 577678..577989 Campylobacter jejuni RM1221 3232038 YP_178655.1 CDS oorA NC_003912.7 577998 579122 D Couples the complete acetyl-CoA oxidation to aromatic ring reduction by the use of the low-potential electron shuttle ferredoxin; 2-oxoglutarate-acceptor oxidoreductase subunit OorA 577998..579122 Campylobacter jejuni RM1221 3232037 YP_178656.1 CDS oorB NC_003912.7 579123 579968 D Catalyzes the two-electron reduction of the C2 and C3(1) diene system of 15,16-dihydrobiliverdin; 2-oxoglutarate-acceptor oxidoreductase subunit OorB 579123..579968 Campylobacter jejuni RM1221 3232036 YP_178657.1 CDS oorC NC_003912.7 579965 580522 D Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; 2-oxoglutarate-acceptor oxidoreductase subunit OorC 579965..580522 Campylobacter jejuni RM1221 3232035 YP_178658.1 CDS CJE0643 NC_003912.7 580661 580924 D hypothetical protein 580661..580924 Campylobacter jejuni RM1221 3232034 YP_178659.1 CDS CJE0644 NC_003912.7 580927 581463 D identified by similarity to OMNI:NTL01HP00225; hypothetical protein 580927..581463 Campylobacter jejuni RM1221 3232033 YP_178660.1 CDS CJE0645 NC_003912.7 581477 582370 D identified by similarity to SP:Q53479; match to protein family HMM PF00348; polyprenyl synthetase 581477..582370 Campylobacter jejuni RM1221 3232032 YP_178661.1 CDS hemA NC_003912.7 582370 583668 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 582370..583668 Campylobacter jejuni RM1221 3232031 YP_178662.1 CDS proS NC_003912.7 583652 585361 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 583652..585361 Campylobacter jejuni RM1221 3232030 YP_178663.1 CDS CJE0648 NC_003912.7 585358 585747 D hypothetical protein 585358..585747 Campylobacter jejuni RM1221 3232029 YP_178664.1 CDS hemC NC_003912.7 585744 586667 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 585744..586667 Campylobacter jejuni RM1221 3232028 YP_178665.1 CDS CJE0650 NC_003912.7 586664 588466 D identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 586664..588466 Campylobacter jejuni RM1221 3232027 YP_178666.1 CDS flaG NC_003912.7 588622 588987 D possibly involved in flagella export; flagellar protein FlaG 588622..588987 Campylobacter jejuni RM1221 3232026 YP_178667.1 CDS fliD NC_003912.7 588990 590900 D Also called hook-associated protein 2; involved in flagellin assembly; flagellar capping protein 588990..590900 Campylobacter jejuni RM1221 3232025 YP_178668.1 CDS fliS NC_003912.7 590912 591298 D flagellin specific chaperone; flagellar protein FliS 590912..591298 Campylobacter jejuni RM1221 3232024 YP_178669.1 CDS CJE0654 NC_003912.7 591279 591554 D hypothetical protein 591279..591554 Campylobacter jejuni RM1221 3232023 YP_178670.1 CDS efp NC_003912.7 591986 592555 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 591986..592555 Campylobacter jejuni RM1221 3232022 YP_178671.1 CDS CJE0656 NC_003912.7 592715 593407 D identified by similarity to OMNI:CC1200; hypothetical protein 592715..593407 Campylobacter jejuni RM1221 3232021 YP_178672.1 CDS CJE0657 NC_003912.7 593394 594347 D identified by similarity to PIR:AF0329; hypothetical protein 593394..594347 Campylobacter jejuni RM1221 3232020 YP_178673.1 CDS CJE0658 NC_003912.7 594357 595361 D identified by similarity to OMNI:CC1198; hypothetical protein 594357..595361 Campylobacter jejuni RM1221 3232019 YP_178674.1 CDS CJE0659 NC_003912.7 595486 596772 D identified by similarity to PIR:C95236; hypothetical protein 595486..596772 Campylobacter jejuni RM1221 3232018 YP_178675.1 CDS CJE0660 NC_003912.7 596783 597580 D identified by similarity to OMNI:PP1699; hypothetical protein 596783..597580 Campylobacter jejuni RM1221 3232017 YP_178676.1 CDS CJE0661 NC_003912.7 597577 598662 R identified by similarity to OMNI:EF0906; hypothetical protein complement(597577..598662) Campylobacter jejuni RM1221 3232016 YP_178677.1 CDS proA NC_003912.7 598659 599891 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(598659..599891) Campylobacter jejuni RM1221 3232015 YP_178678.1 CDS CJE0663 NC_003912.7 599962 600897 D identified by match to protein family HMM PF00070; pyridine nucleotide-disulphide oxidoreductase 599962..600897 Campylobacter jejuni RM1221 3232014 YP_178679.1 CDS CJE0666 NC_003912.7 602453 603382 R identified by similarity to GP:27360586; hypothetical protein complement(602453..603382) Campylobacter jejuni RM1221 3232012 YP_178680.1 CDS dnaB NC_003912.7 603536 604912 D unwinds double stranded DNA; replicative DNA helicase 603536..604912 Campylobacter jejuni RM1221 3232011 YP_178681.1 CDS CJE0668 NC_003912.7 605017 605577 D hypothetical protein 605017..605577 Campylobacter jejuni RM1221 3232010 YP_178682.1 CDS CJE0669 NC_003912.7 605568 605774 D hypothetical protein 605568..605774 Campylobacter jejuni RM1221 3232009 YP_178683.1 CDS CJE0670 NC_003912.7 605904 606971 D identified by similarity to GP:4155226; GTP-binding protein 605904..606971 Campylobacter jejuni RM1221 3232008 YP_178684.1 CDS CJE0671 NC_003912.7 606982 607152 D hypothetical protein 606982..607152 Campylobacter jejuni RM1221 3232007 YP_178685.1 CDS CJE0672 NC_003912.7 607166 607471 D identified by similarity to OMNI:NTL01HP00661; hypothetical protein 607166..607471 Campylobacter jejuni RM1221 3232006 YP_178686.1 CDS CJE0674 NC_003912.7 608545 609417 D identified by similarity to SP:P52133; transcriptional regulator 608545..609417 Campylobacter jejuni RM1221 3232004 YP_178687.1 CDS ribB NC_003912.7 609716 610735 D bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 609716..610735 Campylobacter jejuni RM1221 3232003 YP_178688.1 CDS CJE0676 NC_003912.7 610747 611190 D identified by match to protein family HMM PF02637; GatB/Yqey family protein 610747..611190 Campylobacter jejuni RM1221 3232002 YP_178689.1 CDS ilvB NC_003912.7 611208 612908 D catalyzes the formation of 2-acetolactate from pyruvate, leucine resistant; also known as acetolactate synthase 3 large subunit; acetolactate synthase 3 catalytic subunit 611208..612908 Campylobacter jejuni RM1221 3232001 YP_178690.1 CDS ilvH NC_003912.7 612905 613369 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 612905..613369 Campylobacter jejuni RM1221 3232000 YP_178691.1 CDS lpxD NC_003912.7 613366 614331 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 613366..614331 Campylobacter jejuni RM1221 3231999 YP_178692.1 CDS queA NC_003912.7 614320 615348 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(614320..615348) Campylobacter jejuni RM1221 3231998 YP_178693.1 CDS tatC NC_003912.7 615341 616078 R identified by similarity to SP:P27857; match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC complement(615341..616078) Campylobacter jejuni RM1221 3231997 YP_178694.1 CDS tatB NC_003912.7 616071 616487 R mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase complement(616071..616487) Campylobacter jejuni RM1221 3231996 YP_178695.1 CDS CJE0683 NC_003912.7 616545 617612 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(616545..617612) Campylobacter jejuni RM1221 3231995 YP_178696.1 CDS nidH NC_003912.7 617713 618183 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 617713..618183 Campylobacter jejuni RM1221 3231994 YP_178697.1 CDS CJE0685 NC_003912.7 618185 619387 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 618185..619387 Campylobacter jejuni RM1221 3231993 YP_178698.1 CDS CJE0686 NC_003912.7 619388 619924 D identified by similarity to PIR:F64673; hypothetical protein 619388..619924 Campylobacter jejuni RM1221 3231992 YP_178699.1 CDS CJE0687 NC_003912.7 619930 620529 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 619930..620529 Campylobacter jejuni RM1221 3231991 YP_178700.1 CDS folP NC_003912.7 620531 621673 D identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 620531..621673 Campylobacter jejuni RM1221 3231990 YP_178701.1 CDS ligA NC_003912.7 621674 623617 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 621674..623617 Campylobacter jejuni RM1221 3231989 YP_178702.1 CDS CJE0690 NC_003912.7 623598 624602 D hypothetical protein 623598..624602 Campylobacter jejuni RM1221 3231988 YP_178703.1 CDS tlyA NC_003912.7 624599 625360 D identified by similarity to SP:Q06803; match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 624599..625360 Campylobacter jejuni RM1221 3231987 YP_178704.1 CDS CJE0692 NC_003912.7 625326 626180 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 625326..626180 Campylobacter jejuni RM1221 3231986 YP_178705.1 CDS CJE0693 NC_003912.7 626170 626877 D identified by match to protein family HMM TIGR00740; methyltransferase 626170..626877 Campylobacter jejuni RM1221 3231985 YP_178706.1 CDS CJE0694 NC_003912.7 626867 627082 R identified by similarity to GP:498878; lipoprotein complement(626867..627082) Campylobacter jejuni RM1221 3231984 YP_178707.1 CDS CJE0695 NC_003912.7 627085 627519 R hypothetical protein complement(627085..627519) Campylobacter jejuni RM1221 3231983 YP_178708.1 CDS CJE0696 NC_003912.7 627577 628209 R identified by similarity to GB:AAP77676.1; match to protein family HMM PF03458; hypothetical protein complement(627577..628209) Campylobacter jejuni RM1221 3231982 YP_178709.1 CDS CJE0697 NC_003912.7 628220 628870 R identified by similarity to GP:28805682; match to protein family HMM PF01223; DNA/RNA non-specific endonuclease complement(628220..628870) Campylobacter jejuni RM1221 3231981 YP_178710.1 CDS nth NC_003912.7 628867 629493 R identified by similarity to SP:P20625; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(628867..629493) Campylobacter jejuni RM1221 3231980 YP_178711.1 CDS CJE0699 NC_003912.7 629574 630395 D identified by similarity to SP:Q46105; match to protein family HMM PF00639; major antigenic peptide PEB4 629574..630395 Campylobacter jejuni RM1221 3231979 YP_178712.1 CDS fbaA NC_003912.7 630395 631459 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 630395..631459 Campylobacter jejuni RM1221 3231978 YP_178713.1 CDS CJE0701 NC_003912.7 631554 632996 D hypothetical protein 631554..632996 Campylobacter jejuni RM1221 3231977 YP_178714.1 CDS CJE0702 NC_003912.7 632993 633946 D identified by similarity to SP:P28612; match to protein family HMM PF00691; chemotaxis protein MotB 632993..633946 Campylobacter jejuni RM1221 3231976 YP_178715.1 CDS CJE0703 NC_003912.7 633933 634808 D identified by similarity to OMNI:SO1978; hypothetical protein 633933..634808 Campylobacter jejuni RM1221 3231975 YP_178716.1 CDS CJE0704 NC_003912.7 634800 636143 R identified by similarity to SP:P45320; match to protein family HMM PF00209; sodium-dependent transporter complement(634800..636143) Campylobacter jejuni RM1221 3231974 YP_178717.1 CDS CJE0705 NC_003912.7 636194 636862 R identified by similarity to GP:29896050; match to protein family HMM PF03473; match to protein family HMM PF03475; MOSC domain-containing protein complement(636194..636862) Campylobacter jejuni RM1221 3231973 YP_178718.1 CDS dsbD NC_003912.7 636859 638562 R identified by similarity to SP:P36655; match to protein family HMM PF02683; thiol:disulfide interchange protein DsbD complement(636859..638562) Campylobacter jejuni RM1221 3231972 YP_178719.1 CDS CJE0707 NC_003912.7 638657 639538 D identified by similarity to OMNI:NTL01CE2558; match to protein family HMM PF03976; hypothetical protein 638657..639538 Campylobacter jejuni RM1221 3231971 YP_178720.1 CDS CJE0708 NC_003912.7 639547 640737 D identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891; carboxypeptidase 639547..640737 Campylobacter jejuni RM1221 3231970 YP_178721.1 CDS CJE0709 NC_003912.7 640816 641988 D identified by similarity to SP:P75830; match to protein family HMM PF00529; match to protein family HMM TIGR01730; macrolide-specific efflux protein macA 640816..641988 Campylobacter jejuni RM1221 3231969 YP_178722.1 CDS CJE0710 NC_003912.7 641988 643913 D identified by similarity to SP:P75831; match to protein family HMM PF00005; match to protein family HMM PF02687; macrolide-specific efflux protein macB 641988..643913 Campylobacter jejuni RM1221 3231968 YP_178723.1 CDS CJE0711 NC_003912.7 643915 645285 D identified by match to protein family HMM PF02321; outer membrane efflux protein 643915..645285 Campylobacter jejuni RM1221 3231967 YP_178724.1 CDS CJE0712 NC_003912.7 645288 646466 R identified by similarity to OMNI:NTL01LL1763; hypothetical protein complement(645288..646466) Campylobacter jejuni RM1221 3231966 YP_178725.1 CDS CJE0713 NC_003912.7 646453 647463 R identified by similarity to OMNI:NMB1274; match to protein family HMM PF04311; hypothetical protein complement(646453..647463) Campylobacter jejuni RM1221 3231965 YP_178726.1 CDS algI NC_003912.7 647464 648840 R identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062; alginate O-acetyltransferase AlgI complement(647464..648840) Campylobacter jejuni RM1221 3231964 YP_178727.1 CDS ftn NC_003912.7 648883 649386 R identified by similarity to SP:P52093; match to protein family HMM PF00210; nonheme iron-containing ferritin complement(648883..649386) Campylobacter jejuni RM1221 3231963 YP_178728.1 CDS CJE0716 NC_003912.7 649566 650561 D identified by match to protein family HMM PF01547; phosphate ABC transporter periplasmic phosphate-binding protein 649566..650561 Campylobacter jejuni RM1221 3231962 YP_178729.1 CDS CJE0717 NC_003912.7 650571 651485 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 650571..651485 Campylobacter jejuni RM1221 3231961 YP_178730.1 CDS CJE0718 NC_003912.7 651482 652570 D identified by match to protein family HMM PF00528; phosphate ABC transporter permease 651482..652570 Campylobacter jejuni RM1221 3231960 YP_178731.1 CDS pstB NC_003912.7 652567 653307 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 652567..653307 Campylobacter jejuni RM1221 3231959 YP_178732.1 CDS CJE0721 NC_003912.7 654603 654701 R hypothetical protein complement(654603..654701) Campylobacter jejuni RM1221 3231957 YP_178733.1 CDS CJE0722 NC_003912.7 654687 656003 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 654687..656003 Campylobacter jejuni RM1221 3231956 YP_178734.1 CDS CJE0723 NC_003912.7 655964 656626 D identified by similarity to GP:28203619; match to protein family HMM PF01863; hypothetical protein 655964..656626 Campylobacter jejuni RM1221 3231955 YP_178735.1 CDS CJE0724 NC_003912.7 656668 658188 D hypothetical protein 656668..658188 Campylobacter jejuni RM1221 3231954 YP_178736.1 CDS hypF NC_003912.7 658169 660358 D identified by similarity to SP:Q02987; match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 658169..660358 Campylobacter jejuni RM1221 3231953 YP_178737.1 CDS hypB NC_003912.7 660435 661178 D identified by similarity to SP:P24190; match to protein family HMM PF01495; match to protein family HMM TIGR00073; hydrogenase accessory protein HypB 660435..661178 Campylobacter jejuni RM1221 3231952 YP_178738.1 CDS hypC NC_003912.7 661178 661459 D identified by similarity to GP:15430693; match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 661178..661459 Campylobacter jejuni RM1221 3231951 YP_178739.1 CDS hypD NC_003912.7 661443 662534 D identified by similarity to SP:P24192; match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 661443..662534 Campylobacter jejuni RM1221 3231950 YP_178740.1 CDS hypE NC_003912.7 662531 663505 D identified by similarity to SP:P40595; match to protein family HMM PF00586; match to protein family HMM PF02769; hydrogenase expression/formation protein HypE 662531..663505 Campylobacter jejuni RM1221 3231949 YP_178741.1 CDS hypA NC_003912.7 663505 663849 D identified by similarity to SP:P24189; match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel insertion protein HypA 663505..663849 Campylobacter jejuni RM1221 3231948 YP_178742.1 CDS CJE0731 NC_003912.7 663944 665971 D identified by similarity to SP:P08763; match to protein family HMM PF01555; type III restriction/modification enzyme, methylase subunit 663944..665971 Campylobacter jejuni RM1221 3231947 YP_178743.1 CDS CJE0732 NC_003912.7 665952 668513 D identified by similarity to SP:P08764; type III restriction-modification enzyme 665952..668513 Campylobacter jejuni RM1221 3230685 YP_178744.1 CDS CJE0733 NC_003912.7 668544 669509 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(668544..669509) Campylobacter jejuni RM1221 3230686 YP_178745.1 CDS CJE0734 NC_003912.7 669502 671436 R identified by match to protein family HMM PF00773; RNB-like protein complement(669502..671436) Campylobacter jejuni RM1221 3230687 YP_178746.1 CDS ilvC NC_003912.7 671555 672577 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 671555..672577 Campylobacter jejuni RM1221 3230688 YP_178747.1 CDS CJE0736 NC_003912.7 672581 673663 D identified by similarity to OMNI:BB0770; match to protein family HMM PF04748; hypothetical protein 672581..673663 Campylobacter jejuni RM1221 3230689 YP_178748.1 CDS dprA NC_003912.7 673653 674426 D identified by similarity to OMNI:HP0333; match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA processing protein A 673653..674426 Campylobacter jejuni RM1221 3230690 YP_178749.1 CDS CJE0738 NC_003912.7 674423 674806 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 674423..674806 Campylobacter jejuni RM1221 3230691 YP_178750.1 CDS CJE0739 NC_003912.7 674835 675674 D identified by similarity to OMNI:NTL01PH01412; match to protein family HMM PF01189; NOL1/NOP2/sun family protein 674835..675674 Campylobacter jejuni RM1221 3230692 YP_178751.1 CDS msrA NC_003912.7 675850 676347 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(675850..676347) Campylobacter jejuni RM1221 3230693 YP_178752.1 CDS ppa NC_003912.7 676389 676907 R catalyzes the hydrolysis of pyrophosphate; inorganic pyrophosphatase complement(676389..676907) Campylobacter jejuni RM1221 3230694 YP_178753.1 CDS adk NC_003912.7 676917 677495 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(676917..677495) Campylobacter jejuni RM1221 3230695 YP_178754.1 CDS aspS NC_003912.7 677492 679243 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(677492..679243) Campylobacter jejuni RM1221 3230696 YP_178755.1 CDS pnk NC_003912.7 679334 680194 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 679334..680194 Campylobacter jejuni RM1221 3230697 YP_178756.1 CDS recN NC_003912.7 680194 681717 D identified by similarity to SP:O25943; match to protein family HMM TIGR00634; DNA repair protein RecN 680194..681717 Campylobacter jejuni RM1221 3230698 YP_178757.1 CDS CJE0746 NC_003912.7 681823 683067 D identified by similarity to PIR:C97489; match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator/GGDEF domain-containing protein 681823..683067 Campylobacter jejuni RM1221 3230699 YP_178758.1 CDS CJE0747 NC_003912.7 683058 683873 D identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 683058..683873 Campylobacter jejuni RM1221 3230700 YP_178759.1 CDS CJE0748 NC_003912.7 683873 684991 D identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476; membrane-bound lytic murein transglycosylase D 683873..684991 Campylobacter jejuni RM1221 3230701 YP_178760.1 CDS rlpA NC_003912.7 684951 685778 D identified by similarity to SP:Q9ZJ38; match to protein family HMM PF03330; match to protein family HMM TIGR00413; rare lipoprotein A 684951..685778 Campylobacter jejuni RM1221 3230702 YP_178761.1 CDS CJE0750 NC_003912.7 685784 686272 D identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670; YrbI family phosphatase 685784..686272 Campylobacter jejuni RM1221 3230703 YP_178762.1 CDS CJE0751 NC_003912.7 686344 686778 D identified by similarity to SP:Q60303; hypothetical protein 686344..686778 Campylobacter jejuni RM1221 3230704 YP_178763.1 CDS CJE0752 NC_003912.7 686760 687221 D identified by match to protein family HMM PF03968; OstA family protein 686760..687221 Campylobacter jejuni RM1221 3230705 YP_178764.1 CDS engB NC_003912.7 687218 687814 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 687218..687814 Campylobacter jejuni RM1221 3230706 YP_178765.1 CDS CJE0754 NC_003912.7 687811 688305 D hypothetical protein 687811..688305 Campylobacter jejuni RM1221 3230707 YP_178766.1 CDS pbpC NC_003912.7 688312 690111 D identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2 688312..690111 Campylobacter jejuni RM1221 3230708 YP_178767.1 CDS CJE0756 NC_003912.7 690232 692022 R identified by match to protein family HMM PF00557; M24 family peptidase complement(690232..692022) Campylobacter jejuni RM1221 3230709 YP_178768.1 CDS CJE0757 NC_003912.7 692038 693591 R identified by similarity to SP:P36574; match to protein family HMM PF00854; match to protein family HMM TIGR00924; di-/tripeptide transporter complement(692038..693591) Campylobacter jejuni RM1221 3230710 YP_178769.1 CDS CJE0759 NC_003912.7 694507 694746 R hypothetical protein complement(694507..694746) Campylobacter jejuni RM1221 3230712 YP_178770.1 CDS CJE0761 NC_003912.7 695404 695952 R hypothetical protein complement(695404..695952) Campylobacter jejuni RM1221 3230713 YP_178771.1 CDS CJE0762 NC_003912.7 696341 697051 R hypothetical protein complement(696341..697051) Campylobacter jejuni RM1221 3230714 YP_178772.1 CDS era NC_003912.7 697038 697913 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(697038..697913) Campylobacter jejuni RM1221 3230715 YP_178773.1 CDS hslU NC_003912.7 697910 699229 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(697910..699229) Campylobacter jejuni RM1221 3230716 YP_178774.1 CDS hslV NC_003912.7 699226 699768 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(699226..699768) Campylobacter jejuni RM1221 3230717 YP_178775.1 CDS rplI NC_003912.7 699768 700211 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(699768..700211) Campylobacter jejuni RM1221 3230718 YP_178776.1 CDS argG NC_003912.7 700224 701444 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(700224..701444) Campylobacter jejuni RM1221 3230719 YP_178777.1 CDS CJE0768 NC_003912.7 701600 701845 D identified by similarity to OMNI:NTL03CP2478; match to protein family HMM PF01479; S4 domain-containing protein 701600..701845 Campylobacter jejuni RM1221 3230720 YP_178778.1 CDS CJE0769 NC_003912.7 701842 702249 D identified by similarity to OMNI:NTL01HP00650; match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 701842..702249 Campylobacter jejuni RM1221 3230721 YP_178779.1 CDS CJE0770 NC_003912.7 702233 702970 D identified by similarity to OMNI:NMB0356; match to protein family HMM PF00005; ABC transporter ATP-binding protein 702233..702970 Campylobacter jejuni RM1221 3230722 YP_178780.1 CDS rpoN NC_003912.7 702970 704220 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 702970..704220 Campylobacter jejuni RM1221 3230723 YP_178781.1 CDS dcuB NC_003912.7 704384 705808 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 704384..705808 Campylobacter jejuni RM1221 3230724 YP_178782.1 CDS CJE0773 NC_003912.7 705950 706063 D hypothetical protein 705950..706063 Campylobacter jejuni RM1221 3230725 YP_178783.1 CDS CJE0776 NC_003912.7 709917 710525 D identified by similarity to SP:P03961; match to protein family HMM PF02669; match to protein family HMM TIGR00681; potassium-transporting ATPase, C subunit 709917..710525 Campylobacter jejuni RM1221 3230728 YP_178784.1 CDS uvrB NC_003912.7 712327 714300 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(712327..714300) Campylobacter jejuni RM1221 3230730 YP_178785.1 CDS CJE0779 NC_003912.7 714454 714684 D identified by similarity to OMNI:HP0385; hypothetical protein 714454..714684 Campylobacter jejuni RM1221 3230731 YP_178786.1 CDS CJE0780 NC_003912.7 714674 714916 D identified by similarity to OMNI:NTL02ST2131; hypothetical protein 714674..714916 Campylobacter jejuni RM1221 3230732 YP_178787.1 CDS CJE0781 NC_003912.7 714913 715350 D hypothetical protein 714913..715350 Campylobacter jejuni RM1221 3230733 YP_178788.1 CDS priA NC_003912.7 715332 717185 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 715332..717185 Campylobacter jejuni RM1221 3230734 YP_178789.1 CDS CJE0783 NC_003912.7 717195 718592 R identified by similarity to GB:AAD50522.1; invasion phenotype protein complement(717195..718592) Campylobacter jejuni RM1221 3230735 YP_178790.1 CDS ispG NC_003912.7 718738 719811 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 718738..719811 Campylobacter jejuni RM1221 3230736 YP_178791.1 CDS flgH NC_003912.7 719841 720539 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(719841..720539) Campylobacter jejuni RM1221 3230737 YP_178792.1 CDS pta NC_003912.7 720629 722134 D identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651; phosphate acetyltransferase 720629..722134 Campylobacter jejuni RM1221 3230738 YP_178793.1 CDS ackA NC_003912.7 722148 723338 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 722148..723338 Campylobacter jejuni RM1221 3230739 YP_178794.1 CDS CJE0789 NC_003912.7 723366 727118 R identified by similarity to OMNI:BBE02; match to protein family HMM PF04313; match to protein family HMM TIGR01612; hypothetical protein complement(723366..727118) Campylobacter jejuni RM1221 3230740 YP_178795.1 CDS CJE0790 NC_003912.7 727268 727759 D hypothetical protein 727268..727759 Campylobacter jejuni RM1221 3230741 YP_178796.1 CDS CJE0791 NC_003912.7 727747 728685 R hypothetical protein complement(727747..728685) Campylobacter jejuni RM1221 3230742 YP_178797.1 CDS mraW NC_003912.7 728685 729617 R identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW complement(728685..729617) Campylobacter jejuni RM1221 3230743 YP_178798.1 CDS CJE0793 NC_003912.7 729782 731272 D identified by similarity to SP:P77241; peptidyl-prolyl cis-trans isomerase D,-like protein 729782..731272 Campylobacter jejuni RM1221 3230744 YP_178799.1 CDS ftsA NC_003912.7 731275 732657 D identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 731275..732657 Campylobacter jejuni RM1221 3230745 YP_178800.1 CDS ftsZ NC_003912.7 732673 733785 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 732673..733785 Campylobacter jejuni RM1221 3230746 YP_178801.1 CDS CJE0796 NC_003912.7 733941 734753 D identified by similarity to SP:P39752; match to protein family HMM PF00460; flagellar basal-body rod protein 733941..734753 Campylobacter jejuni RM1221 3230747 YP_178802.1 CDS flgG NC_003912.7 734782 735573 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 734782..735573 Campylobacter jejuni RM1221 3230748 YP_178803.1 CDS glnA NC_003912.7 735639 737069 R identified by similarity to SP:P06711; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I complement(735639..737069) Campylobacter jejuni RM1221 3230749 YP_178804.1 CDS CJE0799 NC_003912.7 737158 737280 R hypothetical protein complement(737158..737280) Campylobacter jejuni RM1221 3232509 YP_178805.1 CDS CJE0800 NC_003912.7 737272 737967 D identified by similarity to OMNI:HP0170; hypothetical protein 737272..737967 Campylobacter jejuni RM1221 3230750 YP_178806.1 CDS CJE0801 NC_003912.7 737964 739217 D identified by similarity to SP:P76403; match to protein family HMM PF01136; U32 family peptidase 737964..739217 Campylobacter jejuni RM1221 3230751 YP_178807.1 CDS purE NC_003912.7 739218 739712 D Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit 739218..739712 Campylobacter jejuni RM1221 3230752 YP_178808.1 CDS glyQ NC_003912.7 740270 741133 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 740270..741133 Campylobacter jejuni RM1221 3230754 YP_178809.1 CDS CJE0805 NC_003912.7 741120 741845 D identified by similarity to SP:O25613; match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein 741120..741845 Campylobacter jejuni RM1221 3230755 YP_178810.1 CDS CJE0806 NC_003912.7 741855 742571 D identified by similarity to OMNI:HP0958; match to protein family HMM PF02591; hypothetical protein 741855..742571 Campylobacter jejuni RM1221 3230756 YP_178811.1 CDS waaA NC_003912.7 742568 743725 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 742568..743725 Campylobacter jejuni RM1221 3230757 YP_178812.1 CDS CJE0808 NC_003912.7 743706 744458 D identified by match to protein family HMM PF00849; RNA pseudouridylate synthase 743706..744458 Campylobacter jejuni RM1221 3230758 YP_178813.1 CDS ffh NC_003912.7 744526 745863 D identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 744526..745863 Campylobacter jejuni RM1221 3230759 YP_178814.1 CDS rpsP NC_003912.7 745929 746156 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 745929..746156 Campylobacter jejuni RM1221 3230760 YP_178815.1 CDS CJE0811 NC_003912.7 746159 746401 D identified by similarity to OMNI:HP1150; hypothetical protein 746159..746401 Campylobacter jejuni RM1221 3230761 YP_178816.1 CDS rimM NC_003912.7 746394 746933 D identified by similarity to SP:P21504; match to protein family HMM PF01782; match to protein family HMM PF05239; 16S rRNA processing protein RimM 746394..746933 Campylobacter jejuni RM1221 3230762 YP_178817.1 CDS trmD NC_003912.7 746930 747634 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 746930..747634 Campylobacter jejuni RM1221 3230763 YP_178818.1 CDS rplS NC_003912.7 747645 748001 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 747645..748001 Campylobacter jejuni RM1221 3230764 YP_178819.1 CDS CJE0815 NC_003912.7 748135 748548 D identified by match to protein family HMM PF00576; transthyretin-like protein 748135..748548 Campylobacter jejuni RM1221 3230765 YP_178820.1 CDS CJE0816 NC_003912.7 748572 749912 D identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358; 3-deoxy-7-phosphoheptulonate synthase 748572..749912 Campylobacter jejuni RM1221 3230766 YP_178821.1 CDS CJE0817 NC_003912.7 749909 750238 D identified by match to protein family HMM PF03960; hypothetical protein 749909..750238 Campylobacter jejuni RM1221 3230767 YP_178822.1 CDS dnaE NC_003912.7 750686 754288 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 750686..754288 Campylobacter jejuni RM1221 3230768 YP_178823.1 CDS CJE0819 NC_003912.7 754300 754932 R identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein complement(754300..754932) Campylobacter jejuni RM1221 3230769 YP_178824.1 CDS flaC NC_003912.7 754967 755716 R identified by similarity to GP:1857639; match to protein family HMM PF00669; flagellin subunit protein FlaC complement(754967..755716) Campylobacter jejuni RM1221 3230770 YP_178825.1 CDS CJE0821 NC_003912.7 755755 756225 R identified by similarity to PIR:B71953; hypothetical protein complement(755755..756225) Campylobacter jejuni RM1221 3230771 YP_178826.1 CDS CJE0822 NC_003912.7 756238 757053 R identified by match to protein family HMM TIGR00536; HemK family modification methylase complement(756238..757053) Campylobacter jejuni RM1221 3230772 YP_178827.1 CDS CJE0823 NC_003912.7 757050 758237 R identified by match to protein family HMM PF01435; M48 family peptidase complement(757050..758237) Campylobacter jejuni RM1221 3230773 YP_178828.1 CDS CJE0824 NC_003912.7 758364 758549 D hypothetical protein 758364..758549 Campylobacter jejuni RM1221 3230774 YP_178829.1 CDS mogA NC_003912.7 758546 759088 R forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA complement(758546..759088) Campylobacter jejuni RM1221 3230775 YP_178830.1 CDS corA NC_003912.7 759109 760092 R identified by similarity to SP:P27841; match to protein family HMM PF01544; match to protein family HMM TIGR00383; magnesium and cobalt transport protein CorA complement(759109..760092) Campylobacter jejuni RM1221 3230776 YP_178831.1 CDS CJE0827 NC_003912.7 760209 761255 D identified by similarity to SP:P06997; match to protein family HMM PF01547; ABC transporter periplasmic substrate-binding protein 760209..761255 Campylobacter jejuni RM1221 3230777 YP_178832.1 CDS CJE0828 NC_003912.7 761266 762591 D identified by similarity to OMNI:NTL01YP3429; hypothetical protein 761266..762591 Campylobacter jejuni RM1221 3230778 YP_178833.1 CDS CJE0829 NC_003912.7 762591 763397 D identified by similarity to OMNI:NTL03PA03251; hypothetical protein 762591..763397 Campylobacter jejuni RM1221 3230779 YP_178834.1 CDS CJE0830 NC_003912.7 763394 764233 D identified by match to protein family HMM PF00528; ABC transporter permease 763394..764233 Campylobacter jejuni RM1221 3230780 YP_178835.1 CDS CJE0831 NC_003912.7 764234 765013 D identified by match to protein family HMM PF00528; ABC transporter permease 764234..765013 Campylobacter jejuni RM1221 3230781 YP_178836.1 CDS CJE0832 NC_003912.7 765054 766007 D identified by similarity to PIR:G75124; match to protein family HMM PF00005; ABC transporter ATP-binding protein 765054..766007 Campylobacter jejuni RM1221 3230782 YP_178837.1 CDS CJE0833 NC_003912.7 766004 766642 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase 766004..766642 Campylobacter jejuni RM1221 3230783 YP_178838.1 CDS cjaC NC_003912.7 766666 767421 R identified by similarity to SP:Q46125; match to protein family HMM PF00497; CjaC complement(766666..767421) Campylobacter jejuni RM1221 3230784 YP_178839.1 CDS CJE0835 NC_003912.7 767754 768371 D hypothetical protein 767754..768371 Campylobacter jejuni RM1221 3230785 YP_178840.1 CDS CJE0837 NC_003912.7 770335 770754 D identified by similarity to OMNI:NTL03PA04082; match to protein family HMM PF05860; match to protein family HMM TIGR01901; hemagglutination domain-containing protein 770335..770754 Campylobacter jejuni RM1221 3230787 YP_178841.1 CDS CJE0838 NC_003912.7 771027 771983 D hypothetical protein 771027..771983 Campylobacter jejuni RM1221 3230788 YP_178842.1 CDS CJE0839 NC_003912.7 772064 772414 D identified by similarity to GP:26453556; hypothetical protein 772064..772414 Campylobacter jejuni RM1221 3230789 YP_178843.1 CDS CJE0840 NC_003912.7 772510 772968 D hypothetical protein 772510..772968 Campylobacter jejuni RM1221 3230790 YP_178844.1 CDS CJE0841 NC_003912.7 773449 773691 D identified by similarity to SP:Q04593; hypothetical protein 773449..773691 Campylobacter jejuni RM1221 3230791 YP_178845.1 CDS CJE0842 NC_003912.7 773943 774164 D identified by similarity to GP:9755165; hypothetical protein 773943..774164 Campylobacter jejuni RM1221 3230792 YP_178846.1 CDS CJE0843 NC_003912.7 774415 774669 D hypothetical protein 774415..774669 Campylobacter jejuni RM1221 3230793 YP_178847.1 CDS tonB NC_003912.7 782888 783571 R identified by similarity to SP:O07650; match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB complement(782888..783571) Campylobacter jejuni RM1221 3231358 YP_178848.1 CDS CJE0846 NC_003912.7 783641 783787 D hypothetical protein 783641..783787 Campylobacter jejuni RM1221 3231359 YP_178849.1 CDS cfrA NC_003912.7 783895 785985 D identified by similarity to GP:2199510; match to protein family HMM PF00593; ferric receptor CfrA 783895..785985 Campylobacter jejuni RM1221 3231360 YP_178850.1 CDS hrcA NC_003912.7 786287 787081 D Acts as a negative regulator of the grpE-dnaK-dnaJ and groELS class I heat shock operons by preventing heat-shock induction; heat-inducible transcription repressor 786287..787081 Campylobacter jejuni RM1221 3231361 YP_178851.1 CDS grpE NC_003912.7 787078 787605 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 787078..787605 Campylobacter jejuni RM1221 3231362 YP_178852.1 CDS dnaK NC_003912.7 787627 789498 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 787627..789498 Campylobacter jejuni RM1221 3231363 YP_178853.1 CDS CJE0851 NC_003912.7 789818 790780 D identified by similarity to OMNI:NTL01XA0250; hypothetical protein 789818..790780 Campylobacter jejuni RM1221 3231364 YP_178854.1 CDS CJE0852 NC_003912.7 790850 791191 D identified by similarity to OMNI:HP0902; hypothetical protein 790850..791191 Campylobacter jejuni RM1221 3231365 YP_178855.1 CDS aspC NC_003912.7 791252 792421 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(791252..792421) Campylobacter jejuni RM1221 3231366 YP_178856.1 CDS cysE NC_003912.7 792594 793232 R identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase complement(792594..793232) Campylobacter jejuni RM1221 3231367 YP_178857.1 CDS speA NC_003912.7 793233 795068 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(793233..795068) Campylobacter jejuni RM1221 3231368 YP_178858.1 CDS hisS NC_003912.7 795065 796291 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(795065..796291) Campylobacter jejuni RM1221 3231369 YP_178859.1 CDS tmk NC_003912.7 796288 796866 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(796288..796866) Campylobacter jejuni RM1221 3231370 YP_178860.1 CDS coaD NC_003912.7 796857 797333 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(796857..797333) Campylobacter jejuni RM1221 3231371 YP_178861.1 CDS CJE0859 NC_003912.7 797373 797936 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(797373..797936) Campylobacter jejuni RM1221 3231372 YP_178862.1 CDS flgA NC_003912.7 797933 798595 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(797933..798595) Campylobacter jejuni RM1221 3231373 YP_178863.1 CDS CJE0861 NC_003912.7 798679 799455 R identified by similarity to OMNI:PP0112; match to protein family HMM PF03180; NLPA family lipoprotein complement(798679..799455) Campylobacter jejuni RM1221 3231374 YP_178864.1 CDS CJE0862 NC_003912.7 799465 800235 R identified by similarity to GP:28203472; match to protein family HMM PF03180; NLPA family lipoprotein complement(799465..800235) Campylobacter jejuni RM1221 3231375 YP_178865.1 CDS CJE0863 NC_003912.7 800284 801057 R identified by similarity to OMNI:NTL01FN1234; match to protein family HMM PF03180; NLPA family lipoprotein complement(800284..801057) Campylobacter jejuni RM1221 3231376 YP_178866.1 CDS CJE0864 NC_003912.7 801247 802158 R identified by similarity to OMNI:NTL01CA0974; match to protein family HMM PF00528; ABC transporter permease complement(801247..802158) Campylobacter jejuni RM1221 3231377 YP_178867.1 CDS CJE0865 NC_003912.7 802155 803165 R identified by similarity to GB:AAO35916.1; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(802155..803165) Campylobacter jejuni RM1221 3231378 YP_178868.1 CDS valS NC_003912.7 803170 805782 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(803170..805782) Campylobacter jejuni RM1221 3231379 YP_178869.1 CDS CJE0867 NC_003912.7 805805 806824 R hypothetical protein complement(805805..806824) Campylobacter jejuni RM1221 3231380 YP_178870.1 CDS CJE0868 NC_003912.7 806953 808983 D identified by similarity to SP:P03018; match to protein family HMM PF00580; ATP-dependent DNA helicase 806953..808983 Campylobacter jejuni RM1221 3231381 YP_178871.1 CDS CJE0869 NC_003912.7 809024 809764 D identified by similarity to GP:558481; similarity to PIR:B41161; major antigenic peptide PEB2 809024..809764 Campylobacter jejuni RM1221 3231382 YP_178872.1 CDS tpx NC_003912.7 809863 810390 D identified by similarity to SP:P37901; match to protein family HMM PF00578; thiol peroxidase 809863..810390 Campylobacter jejuni RM1221 3231383 YP_178873.1 CDS napA NC_003912.7 810637 813411 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 810637..813411 Campylobacter jejuni RM1221 3231384 YP_178874.1 CDS napG NC_003912.7 813429 814169 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 813429..814169 Campylobacter jejuni RM1221 3231385 YP_178875.1 CDS napH NC_003912.7 814169 814948 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 814169..814948 Campylobacter jejuni RM1221 3231386 YP_178876.1 CDS napB NC_003912.7 814948 815469 D identified by similarity to SP:P39186; match to protein family HMM PF03892; periplasmic nitrate reductase, small subunit 814948..815469 Campylobacter jejuni RM1221 3231387 YP_178877.1 CDS napL NC_003912.7 815474 816388 D NapL 815474..816388 Campylobacter jejuni RM1221 3231388 YP_178878.1 CDS napD NC_003912.7 816381 816719 D identified by similarity to SP:P33938; match to protein family HMM PF03927; NapD 816381..816719 Campylobacter jejuni RM1221 3231389 YP_178879.1 CDS CJE0877 NC_003912.7 816732 816905 D hypothetical protein 816732..816905 Campylobacter jejuni RM1221 3231390 YP_178880.1 CDS CJE0878 NC_003912.7 816987 817232 D identified by similarity to OMNI:HP0168; hypothetical protein 816987..817232 Campylobacter jejuni RM1221 3231391 YP_178881.1 CDS CJE0879 NC_003912.7 817229 817720 D identified by similarity to OMNI:HP0167; hypothetical protein 817229..817720 Campylobacter jejuni RM1221 3231392 YP_178882.1 CDS CJE0880 NC_003912.7 817776 818807 D identified by match to protein family HMM PF01743; polyA polymerase 817776..818807 Campylobacter jejuni RM1221 3231393 YP_178883.1 CDS purU NC_003912.7 818804 819628 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 818804..819628 Campylobacter jejuni RM1221 3231394 YP_178884.1 CDS CJE0882 NC_003912.7 819625 820893 R aminotransferase complement(819625..820893) Campylobacter jejuni RM1221 3231395 YP_178885.1 CDS CJE0883 NC_003912.7 820935 821813 D identified by similarity to GB:AAL94332.1; match to protein family HMM PF03008; hypothetical protein 820935..821813 Campylobacter jejuni RM1221 3231396 YP_178886.1 CDS CJE0884 NC_003912.7 821817 822836 D identified by similarity to GP:13359310; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 821817..822836 Campylobacter jejuni RM1221 3231397 YP_178887.1 CDS CJE0885 NC_003912.7 822935 824239 D hypothetical protein 822935..824239 Campylobacter jejuni RM1221 3231398 YP_178888.1 CDS CJE0886 NC_003912.7 824297 825724 R identified by match to protein family HMM PF01225; match to protein family HMM PF02875; Mur ligase complement(824297..825724) Campylobacter jejuni RM1221 3231399 YP_178889.1 CDS CJE0887 NC_003912.7 825725 826444 R identified by similarity to OMNI:HP0739; hypothetical protein complement(825725..826444) Campylobacter jejuni RM1221 3231400 YP_178890.1 CDS CJE0888 NC_003912.7 826446 826661 R identified by match to protein family HMM TIGR01552; prevent-host-death family protein complement(826446..826661) Campylobacter jejuni RM1221 3231401 YP_178891.1 CDS ddl NC_003912.7 826721 827761 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(826721..827761) Campylobacter jejuni RM1221 3231402 YP_178892.1 CDS ruvA NC_003912.7 827771 828322 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(827771..828322) Campylobacter jejuni RM1221 3231403 YP_178893.1 CDS CJE0891 NC_003912.7 828298 830157 R identified by similarity to OMNI:HP0884; hypothetical protein complement(828298..830157) Campylobacter jejuni RM1221 3231404 YP_178894.1 CDS mviN NC_003912.7 830261 831712 D identified by similarity to SP:O25551; match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 830261..831712 Campylobacter jejuni RM1221 3231405 YP_178895.1 CDS cysS NC_003912.7 831712 833100 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 831712..833100 Campylobacter jejuni RM1221 3231406 YP_178896.1 CDS CJE0894 NC_003912.7 833093 834835 D identified by similarity to SP:P27299; match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease MsbA 833093..834835 Campylobacter jejuni RM1221 3231407 YP_178897.1 CDS pyrD NC_003912.7 834867 835925 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 834867..835925 Campylobacter jejuni RM1221 3231408 YP_178898.1 CDS CJE0896 NC_003912.7 835922 837172 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 835922..837172 Campylobacter jejuni RM1221 3231409 YP_178899.1 CDS dapA NC_003912.7 837165 838061 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 837165..838061 Campylobacter jejuni RM1221 3231410 YP_178900.1 CDS CJE0898 NC_003912.7 838061 838840 D Acts on the hydroxyl group at position 7 of the steroid frame; 7-alpha-hydroxysteroid dehydrogenase 838061..838840 Campylobacter jejuni RM1221 3231411 YP_178901.1 CDS CJE0899 NC_003912.7 838881 839186 R hypothetical protein complement(838881..839186) Campylobacter jejuni RM1221 3231412 YP_178902.1 CDS CJE0900 NC_003912.7 839198 839794 R identified by similarity to OMNI:NTL01HP00742; match to protein family HMM PF00753; metallo-beta-lactamase complement(839198..839794) Campylobacter jejuni RM1221 3231413 YP_178903.1 CDS nadE NC_003912.7 839868 840608 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 839868..840608 Campylobacter jejuni RM1221 3231414 YP_178904.1 CDS lpxK NC_003912.7 840612 841538 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 840612..841538 Campylobacter jejuni RM1221 3231415 YP_178905.1 CDS thrC NC_003912.7 841535 842947 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 841535..842947 Campylobacter jejuni RM1221 3231416 YP_178906.1 CDS kdsB NC_003912.7 842944 843663 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 842944..843663 Campylobacter jejuni RM1221 3231417 YP_178907.1 CDS CJE0905 NC_003912.7 843750 844997 D hypothetical protein 843750..844997 Campylobacter jejuni RM1221 3231418 YP_178908.1 CDS CJE0906 NC_003912.7 845091 845861 D identified by similarity to SP:P10344; similarity to SP:P30859; match to protein family HMM PF00497; amino acid-binding protein 845091..845861 Campylobacter jejuni RM1221 3231419 YP_178909.1 CDS fliP NC_003912.7 845877 846611 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(845877..846611) Campylobacter jejuni RM1221 3231420 YP_178910.1 CDS glmU NC_003912.7 846755 848044 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 846755..848044 Campylobacter jejuni RM1221 3231421 YP_178911.1 CDS coaBC NC_003912.7 848041 849195 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 848041..849195 Campylobacter jejuni RM1221 3231422 YP_178912.1 CDS CJE0910 NC_003912.7 849198 849809 D identified by similarity to OMNI:NTL01HP00773; hypothetical protein 849198..849809 Campylobacter jejuni RM1221 3231423 YP_178913.1 CDS uppS NC_003912.7 849813 850481 D identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase 849813..850481 Campylobacter jejuni RM1221 3231424 YP_178914.1 CDS CJE0912 NC_003912.7 850478 851254 D identified by similarity to SP:P27717; match to protein family HMM PF01478; A24 family peptidase 850478..851254 Campylobacter jejuni RM1221 3231425 YP_178915.1 CDS CJE0913 NC_003912.7 851254 852279 D identified by similarity to OMNI:NTL01HP01010; match to protein family HMM PF03739; hypothetical protein 851254..852279 Campylobacter jejuni RM1221 3231426 YP_178916.1 CDS truA NC_003912.7 852279 853001 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 852279..853001 Campylobacter jejuni RM1221 3231427 YP_178917.1 CDS ilvA NC_003912.7 852998 854209 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(852998..854209) Campylobacter jejuni RM1221 3231428 YP_178918.1 CDS CJE0916 NC_003912.7 854209 854622 R identified by similarity to OMNI:EF1616; match to protein family HMM PF02629; CoA-binding domain-containing protein complement(854209..854622) Campylobacter jejuni RM1221 3231429 YP_178919.1 CDS CJE0917 NC_003912.7 854741 855157 D identified by similarity to GB:AAP76762.1; match to protein family HMM PF04323; hypothetical protein 854741..855157 Campylobacter jejuni RM1221 3231430 YP_178920.1 CDS trmA NC_003912.7 855144 856217 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(855144..856217) Campylobacter jejuni RM1221 3231431 YP_178921.1 CDS CJE0919 NC_003912.7 856214 857947 R identified by similarity to GP:28202739; match to protein family HMM PF03553; Na+/H+ antiporter family protein complement(856214..857947) Campylobacter jejuni RM1221 3231432 YP_178922.1 CDS CJE0920 NC_003912.7 857944 858693 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase complement(857944..858693) Campylobacter jejuni RM1221 3231433 YP_178923.1 CDS CJE0921 NC_003912.7 858690 859928 R identified by similarity to OMNI:NTL01CJ00787; match to protein family HMM PF00023; ankyrin complement(858690..859928) Campylobacter jejuni RM1221 3231434 YP_178924.1 CDS acnB NC_003912.7 859988 862534 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(859988..862534) Campylobacter jejuni RM1221 3231435 YP_178925.1 CDS ogt NC_003912.7 862589 863041 D identified by similarity to SP:P11742; match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine S-methyltransferase 862589..863041 Campylobacter jejuni RM1221 3231436 YP_178926.1 CDS CJE0924 NC_003912.7 863033 863974 R identified by similarity to OMNI:NTL01HP00959; hypothetical protein complement(863033..863974) Campylobacter jejuni RM1221 3231437 YP_178927.1 CDS metG NC_003912.7 863978 865864 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(863978..865864) Campylobacter jejuni RM1221 3231438 YP_178928.1 CDS CJE0926 NC_003912.7 865874 866071 R identified by similarity to OMNI:HP1384; hypothetical protein complement(865874..866071) Campylobacter jejuni RM1221 3231439 YP_178929.1 CDS fbp NC_003912.7 866064 866906 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(866064..866906) Campylobacter jejuni RM1221 3231440 YP_178930.1 CDS mobB NC_003912.7 866908 867399 R identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein MobB complement(866908..867399) Campylobacter jejuni RM1221 3231441 YP_178931.1 CDS CJE0929 NC_003912.7 867495 867980 D identified by similarity to GP:29341106; lipoprotein 867495..867980 Campylobacter jejuni RM1221 3231442 YP_178932.1 CDS CJE0930 NC_003912.7 867877 869502 R identified by similarity to SP:P03810; match to protein family HMM PF01464; soluble lytic murein transglycosylase complement(867877..869502) Campylobacter jejuni RM1221 3231443 YP_178933.1 CDS CJE0931 NC_003912.7 869499 869780 R identified by similarity to OMNI:NTL01HP00585; match to protein family HMM PF02325; YGGT family protein complement(869499..869780) Campylobacter jejuni RM1221 3231444 YP_178934.1 CDS gltX NC_003912.7 869783 871078 R charges one glutamine molecule and pairs it with tRNA(Gln); glutamylglutaminyl-tRNA synthetase complement(869783..871078) Campylobacter jejuni RM1221 3231445 YP_178935.1 CDS CJE0933 NC_003912.7 871164 872288 D identified by similarity to SP:Q9ZM43; match to protein family HMM PF00149; Ser/Thr protein phosphatase 871164..872288 Campylobacter jejuni RM1221 3231446 YP_178936.1 CDS psd NC_003912.7 872285 873085 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 872285..873085 Campylobacter jejuni RM1221 3231447 YP_178937.1 CDS CJE0935 NC_003912.7 873082 873363 R identified by match to protein family HMM TIGR00789; FlhB domain-containing protein complement(873082..873363) Campylobacter jejuni RM1221 3231448 YP_178938.1 CDS CJE0936 NC_003912.7 873360 875471 R hypothetical protein complement(873360..875471) Campylobacter jejuni RM1221 3231449 YP_178939.1 CDS CJE0937 NC_003912.7 875464 876651 R identified by similarity to GB:AAN68690.1; match to protein family HMM PF00083; major facilitator family protein complement(875464..876651) Campylobacter jejuni RM1221 3231450 YP_178940.1 CDS CJE0938 NC_003912.7 876629 877132 R hypothetical protein complement(876629..877132) Campylobacter jejuni RM1221 3231451 YP_178941.1 CDS CJE0939 NC_003912.7 877132 877461 R hypothetical protein complement(877132..877461) Campylobacter jejuni RM1221 3231452 YP_178942.1 CDS hemL NC_003912.7 877458 878732 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(877458..878732) Campylobacter jejuni RM1221 3231453 YP_178943.1 CDS CJE0941 NC_003912.7 878729 879076 R identified by similarity to PIR:D64549; hypothetical protein complement(878729..879076) Campylobacter jejuni RM1221 3231454 YP_178944.1 CDS folD NC_003912.7 879156 880004 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 879156..880004 Campylobacter jejuni RM1221 3231455 YP_178945.1 CDS lepB NC_003912.7 880014 880862 D identified by similarity to SP:P00803; match to protein family HMM PF00461; signal peptidase I 880014..880862 Campylobacter jejuni RM1221 3231456 YP_178946.1 CDS CJE0944 NC_003912.7 880884 882044 R identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis MoeA protein complement(880884..882044) Campylobacter jejuni RM1221 3231457 YP_178947.1 CDS murA NC_003912.7 882041 883297 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(882041..883297) Campylobacter jejuni RM1221 3231458 YP_178948.1 CDS CJE0946 NC_003912.7 883363 883791 R hypothetical protein complement(883363..883791) Campylobacter jejuni RM1221 3231459 YP_178949.1 CDS CJE0947 NC_003912.7 883885 884757 D identified by similarity to OMNI:NTL01FN0565; match to protein family HMM PF00892; integral membrane protein 883885..884757 Campylobacter jejuni RM1221 3231460 YP_178950.1 CDS pabA NC_003912.7 884744 885310 R identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; para-aminobenzoate synthase glutamine amidotransferase, component II complement(884744..885310) Campylobacter jejuni RM1221 3231461 YP_178951.1 CDS pabB NC_003912.7 885307 887091 R identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553; para-aminobenzoate synthase glutamine amidotransferase, component I complement(885307..887091) Campylobacter jejuni RM1221 3231462 YP_178952.1 CDS CJE0950 NC_003912.7 887081 888145 R identified by similarity to SP:P21891; match to protein family HMM PF00589; phage integrase family site specific recombinase complement(887081..888145) Campylobacter jejuni RM1221 3231463 YP_178953.1 CDS dsbA NC_003912.7 888773 889435 D identified by similarity to SP:P24991; thiol:disulfide interchange protein DsbA 888773..889435 Campylobacter jejuni RM1221 3231464 YP_178954.1 CDS dsbB NC_003912.7 889447 890232 D identified by similarity to SP:P30018; disulfide oxidoreductase 889447..890232 Campylobacter jejuni RM1221 3231465 YP_178955.1 CDS CJE0954 NC_003912.7 891829 892500 D identified by match to protein family HMM PF01323; thiol:disulfide interchange protein DsbA 891829..892500 Campylobacter jejuni RM1221 3231467 YP_178956.1 CDS CJE0958 NC_003912.7 893729 893869 D hypothetical protein 893729..893869 Campylobacter jejuni RM1221 3231469 YP_178957.1 CDS CJE0959 NC_003912.7 893857 894489 R periplasmic protein complement(893857..894489) Campylobacter jejuni RM1221 3231470 YP_178958.1 CDS CJE0960 NC_003912.7 894486 894728 R identified by similarity to SP:Q60375; hypothetical protein complement(894486..894728) Campylobacter jejuni RM1221 3231471 YP_178959.1 CDS CJE0961 NC_003912.7 894712 895758 R identified by similarity to OMNI:NTL01HP00379; hypothetical protein complement(894712..895758) Campylobacter jejuni RM1221 3231472 YP_178960.1 CDS flhA NC_003912.7 895767 897941 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(895767..897941) Campylobacter jejuni RM1221 3231473 YP_178961.1 CDS CJE0963 NC_003912.7 897928 898338 R identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; RrF2 family protein complement(897928..898338) Campylobacter jejuni RM1221 3231474 YP_178962.1 CDS rpsO NC_003912.7 898513 898785 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 898513..898785 Campylobacter jejuni RM1221 3231475 YP_178963.1 CDS CJE0965 NC_003912.7 898871 901696 R identified by similarity to OMNI:NTL01HP00332; match to protein family HMM PF01580; cell division protein FtsK complement(898871..901696) Campylobacter jejuni RM1221 3231476 YP_178964.1 CDS CJE0966 NC_003912.7 901821 904073 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; lagellar hook-associated protein FlgL complement(901821..904073) Campylobacter jejuni RM1221 3231477 YP_178965.1 CDS CJE0967 NC_003912.7 904454 906385 R identified by similarity to GP:28806586; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(904454..906385) Campylobacter jejuni RM1221 3231478 YP_178966.1 CDS CJE0968 NC_003912.7 906389 907678 R identified by similarity to OMNI:NTL01TT0955; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(906389..907678) Campylobacter jejuni RM1221 3231479 YP_178967.1 CDS CJE0969 NC_003912.7 907672 908334 R identified by similarity to OMNI:SA0019; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(907672..908334) Campylobacter jejuni RM1221 3231480 YP_178968.1 CDS serA NC_003912.7 908321 909904 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(908321..909904) Campylobacter jejuni RM1221 3231481 YP_178969.1 CDS CJE0971 NC_003912.7 909901 910389 R hypothetical protein complement(909901..910389) Campylobacter jejuni RM1221 3231482 YP_178970.1 CDS rpsA NC_003912.7 910389 912059 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(910389..912059) Campylobacter jejuni RM1221 3231483 YP_178971.1 CDS ispH NC_003912.7 912191 913024 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(912191..913024) Campylobacter jejuni RM1221 3231484 YP_178972.1 CDS aroA NC_003912.7 913014 914300 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(913014..914300) Campylobacter jejuni RM1221 3231485 YP_178973.1 CDS pheT NC_003912.7 914297 916618 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(914297..916618) Campylobacter jejuni RM1221 3231486 YP_178974.1 CDS pheS NC_003912.7 916615 917607 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(916615..917607) Campylobacter jejuni RM1221 3231487 YP_178975.1 CDS CJE0977 NC_003912.7 917730 918095 D identified by match to protein family HMM PF01230; HIT family protein 917730..918095 Campylobacter jejuni RM1221 3231488 YP_178976.1 CDS thiJ NC_003912.7 918125 918694 R identified by similarity to SP:Q46948; match to protein family HMM PF01965; match to protein family HMM TIGR01383; 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme complement(918125..918694) Campylobacter jejuni RM1221 3231489 YP_178977.1 CDS CJE0979 NC_003912.7 918687 918866 R hypothetical protein complement(918687..918866) Campylobacter jejuni RM1221 3231490 YP_178978.1 CDS CJE0980 NC_003912.7 918949 919692 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine amino acid ABC transporter permease 918949..919692 Campylobacter jejuni RM1221 3231491 YP_178979.1 CDS CJE0981 NC_003912.7 919685 920413 D identified by similarity to SP:P27675; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 919685..920413 Campylobacter jejuni RM1221 3231492 YP_178980.1 CDS CJE0982 NC_003912.7 920441 921907 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino acid carrier protein complement(920441..921907) Campylobacter jejuni RM1221 3231493 YP_178981.1 CDS CJE0983 NC_003912.7 922011 922478 R identified by match to protein family HMM PF00588; RNA methyltransferase complement(922011..922478) Campylobacter jejuni RM1221 3231494 YP_178982.1 CDS alr NC_003912.7 922481 923467 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(922481..923467) Campylobacter jejuni RM1221 3231495 YP_178983.1 CDS CJE0985 NC_003912.7 923468 924445 R identified by similarity to OMNI:HP0518; hypothetical protein complement(923468..924445) Campylobacter jejuni RM1221 3231496 YP_178984.1 CDS CJE0986 NC_003912.7 924602 925072 D identified by similarity to GP:28974236; hypothetical protein 924602..925072 Campylobacter jejuni RM1221 3231497 YP_178985.1 CDS CJE0987 NC_003912.7 925158 925577 D identified by similarity to OMNI:VCA0037; match to protein family HMM PF04314; hypothetical protein 925158..925577 Campylobacter jejuni RM1221 3231498 YP_178986.1 CDS CJE0988 NC_003912.7 925581 926033 D identified by similarity to GP:28974236; hypothetical protein 925581..926033 Campylobacter jejuni RM1221 3231499 YP_178987.1 CDS CJE0989 NC_003912.7 926030 926590 D identified by match to protein family HMM PF02630; SCO1/SenC family protein 926030..926590 Campylobacter jejuni RM1221 3231500 YP_178988.1 CDS cysK NC_003912.7 926597 927496 R identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A complement(926597..927496) Campylobacter jejuni RM1221 3231501 YP_178989.1 CDS hup NC_003912.7 927623 927919 R identified by similarity to SP:P02346; match to protein family HMM PF00216; DNA-binding protein HU complement(927623..927919) Campylobacter jejuni RM1221 3231502 YP_178990.1 CDS ciaB NC_003912.7 928021 929853 R identified by similarity to GP:5052311; invasion antigen B complement(928021..929853) Campylobacter jejuni RM1221 3231503 YP_178991.1 CDS CJE0993 NC_003912.7 929915 930328 D identified by match to protein family HMM PF03061; thioesterase 929915..930328 Campylobacter jejuni RM1221 3231504 YP_178992.1 CDS CJE0994 NC_003912.7 930368 930565 R identified by similarity to OMNI:NTL01CJ00861; match to protein family HMM PF04328; hypothetical protein complement(930368..930565) Campylobacter jejuni RM1221 3231505 YP_178993.1 CDS cstA NC_003912.7 930546 932657 R identified by similarity to SP:P15078; match to protein family HMM PF02554; carbon starvation protein A complement(930546..932657) Campylobacter jejuni RM1221 3231506 YP_178994.1 CDS prsA NC_003912.7 932824 933753 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(932824..933753) Campylobacter jejuni RM1221 3231507 YP_178995.1 CDS CJE0997 NC_003912.7 933860 934519 R identified by similarity to OMNI:NTL01CJ00864; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease PEB1 complement(933860..934519) Campylobacter jejuni RM1221 3231508 YP_178996.1 CDS CJE0998 NC_003912.7 934530 935282 R identified by similarity to OMNI:NTL01CJ00865; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease PEB1 complement(934530..935282) Campylobacter jejuni RM1221 3231509 YP_178997.1 CDS pebA NC_003912.7 935284 936063 R PEB1; bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein complement(935284..936063) Campylobacter jejuni RM1221 3231510 YP_178998.1 CDS pebC NC_003912.7 936085 936813 R identified by similarity to SP:P45677; match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein PEB1 complement(936085..936813) Campylobacter jejuni RM1221 3231511 YP_178999.1 CDS cheR NC_003912.7 936949 937737 R identified by similarity to SP:P31105; match to protein family HMM PF01739; match to protein family HMM PF03705; chemotaxis protein methyltransferase CheR complement(936949..937737) Campylobacter jejuni RM1221 3231512 YP_179000.1 CDS cheB NC_003912.7 937753 938307 R identified by similarity to SP:P04042; match to protein family HMM PF01339; chemotaxis protein CheB complement(937753..938307) Campylobacter jejuni RM1221 3231513 YP_179001.1 CDS rpiB NC_003912.7 938473 938910 D identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689; ribose 5-phosphate isomerase B 938473..938910 Campylobacter jejuni RM1221 3231514 YP_179002.1 CDS CJE1004 NC_003912.7 938910 939242 D identified by similarity to OMNI:HP0573; hypothetical protein 938910..939242 Campylobacter jejuni RM1221 3231515 YP_179003.1 CDS apt NC_003912.7 939239 939787 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 939239..939787 Campylobacter jejuni RM1221 3231516 YP_179004.1 CDS CJE1006 NC_003912.7 939806 940402 D identified by match to protein family HMM PF00597; DedA family protein 939806..940402 Campylobacter jejuni RM1221 3231517 YP_179005.1 CDS CJE1007 NC_003912.7 940399 941850 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 940399..941850 Campylobacter jejuni RM1221 3231518 YP_179006.1 CDS CJE1008 NC_003912.7 941847 942950 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 941847..942950 Campylobacter jejuni RM1221 3231519 YP_179007.1 CDS argH NC_003912.7 942972 944354 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(942972..944354) Campylobacter jejuni RM1221 3231520 YP_179008.1 CDS pckA NC_003912.7 944364 945938 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(944364..945938) Campylobacter jejuni RM1221 3231521 YP_179009.1 CDS CJE1011 NC_003912.7 945951 947750 R identified by match to protein family HMM PF00364; oxaloacetate decarboxylase, alpha subunit complement(945951..947750) Campylobacter jejuni RM1221 3231522 YP_179010.1 CDS CJE1012 NC_003912.7 947782 949122 R identified by match to protein family HMM PF00209; sodium transporter complement(947782..949122) Campylobacter jejuni RM1221 3231523 YP_179011.1 CDS CJE1013 NC_003912.7 949135 950469 R identified by similarity to SP:P45320; match to protein family HMM PF00209; sodium transporter complement(949135..950469) Campylobacter jejuni RM1221 3231524 YP_179012.1 CDS atpE NC_003912.7 950702 951040 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 950702..951040 Campylobacter jejuni RM1221 3231525 YP_179013.1 CDS CJE1015 NC_003912.7 951358 952269 D identified by similarity to OMNI:NTL02LI4054; match to protein family HMM PF03547; hypothetical protein 951358..952269 Campylobacter jejuni RM1221 3231526 YP_179014.1 CDS aas NC_003912.7 952277 955789 R identified by similarity to SP:P31119; match to protein family HMM PF00501; match to protein family HMM PF01553; 2-acyl-glycerophospho-ethanolamine acyltransferase complement(952277..955789) Campylobacter jejuni RM1221 3231527 YP_179015.1 CDS CJE1017 NC_003912.7 955834 956214 R identified by similarity to OMNI:NTL01HP00357; hypothetical protein complement(955834..956214) Campylobacter jejuni RM1221 3231528 YP_179016.1 CDS CJE1018 NC_003912.7 957015 957800 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease complement(957015..957800) Campylobacter jejuni RM1221 3231529 YP_179017.1 CDS CJE1019 NC_003912.7 957823 959028 R identified by match to protein family HMM PF02687; permease complement(957823..959028) Campylobacter jejuni RM1221 3231530 YP_179018.1 CDS secA NC_003912.7 959025 961613 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(959025..961613) Campylobacter jejuni RM1221 3231531 YP_179019.2 CDS lolA NC_003912.7 961713 962222 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 961713..962222 Campylobacter jejuni RM1221 3231532 YP_179020.1 CDS CJE1022 NC_003912.7 962219 962953 R identified by similarity to OMNI:BBA60; hypothetical protein complement(962219..962953) Campylobacter jejuni RM1221 3231533 YP_179021.1 CDS CJE1023 NC_003912.7 962963 964306 R identified by similarity to GP:29341447; hypothetical protein complement(962963..964306) Campylobacter jejuni RM1221 3231534 YP_179022.1 CDS CJE1024 NC_003912.7 964355 965701 D identified by similarity to OMNI:HP0087; lipoprotein 964355..965701 Campylobacter jejuni RM1221 3231535 YP_179023.1 CDS CJE1025 NC_003912.7 965713 966585 R identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase complement(965713..966585) Campylobacter jejuni RM1221 3231536 YP_179024.1 CDS CJE1026 NC_003912.7 966582 967469 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein complement(966582..967469) Campylobacter jejuni RM1221 3231537 YP_179025.1 CDS CJE1027 NC_003912.7 967466 968443 R identified by match to protein family HMM PF04371; peptidyl-arginine deiminase complement(967466..968443) Campylobacter jejuni RM1221 3231538 YP_179026.1 CDS CJE1028 NC_003912.7 968542 968976 R identified by similarity to SP:P52644; match to protein family HMM PF03724; lipoprotein complement(968542..968976) Campylobacter jejuni RM1221 3231539 YP_179027.1 CDS CJE1029 NC_003912.7 968992 969111 R hypothetical protein complement(968992..969111) Campylobacter jejuni RM1221 3231540 YP_179028.1 CDS CJE1030 NC_003912.7 969127 969660 R identified by similarity to OMNI:SO0500; match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(969127..969660) Campylobacter jejuni RM1221 3231541 YP_179029.1 CDS purH NC_003912.7 970677 972209 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(970677..972209) Campylobacter jejuni RM1221 3231543 YP_179030.1 CDS CJE1034 NC_003912.7 972212 972850 R identified by similarity to SP:Q45885; match to protein family HMM PF00226; DnaJ domain-containing protein complement(972212..972850) Campylobacter jejuni RM1221 3231544 YP_179031.1 CDS purL NC_003912.7 972979 975165 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II complement(972979..975165) Campylobacter jejuni RM1221 3231545 YP_179032.1 CDS trmE NC_003912.7 975176 976504 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(975176..976504) Campylobacter jejuni RM1221 3231546 YP_179033.1 CDS CJE1037 NC_003912.7 976497 977315 R identified by similarity to OMNI:HP1451; hypothetical protein complement(976497..977315) Campylobacter jejuni RM1221 3231547 YP_179034.1 CDS CJE1038 NC_003912.7 977312 978904 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(977312..978904) Campylobacter jejuni RM1221 3231548 YP_179035.1 CDS CJE1039 NC_003912.7 978901 979242 R identified by similarity to SP:O25988; match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein complement(978901..979242) Campylobacter jejuni RM1221 3231549 YP_179036.1 CDS rnpA NC_003912.7 979239 979565 R identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component complement(979239..979565) Campylobacter jejuni RM1221 3231550 YP_179037.1 CDS rpmH NC_003912.7 979562 979696 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(979562..979696) Campylobacter jejuni RM1221 3231551 YP_179038.1 CDS CJE1042 NC_003912.7 979827 980306 D identified by match to protein family HMM PF00583; acetyltransferase 979827..980306 Campylobacter jejuni RM1221 3231552 YP_179039.1 CDS CJE1043 NC_003912.7 980303 980911 D identified by similarity to OMNI:NTL01AA01172; hypothetical protein 980303..980911 Campylobacter jejuni RM1221 3231553 YP_179040.1 CDS CJE1044 NC_003912.7 980908 982098 D identified by similarity to OMNI:NTL01HP00711; hypothetical protein 980908..982098 Campylobacter jejuni RM1221 3231554 YP_179041.1 CDS CJE1045 NC_003912.7 982090 982464 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase complement(982090..982464) Campylobacter jejuni RM1221 3231555 YP_179042.1 CDS CJE1046 NC_003912.7 982572 982670 R hypothetical protein complement(982572..982670) Campylobacter jejuni RM1221 3231556 YP_179043.1 CDS CJE1048 NC_003912.7 984859 984987 D hypothetical protein 984859..984987 Campylobacter jejuni RM1221 3231558 YP_179044.1 CDS CJE1049 NC_003912.7 985084 985197 D hypothetical protein 985084..985197 Campylobacter jejuni RM1221 3231559 YP_179045.1 CDS CJE1050 NC_003912.7 985215 985391 D hypothetical protein 985215..985391 Campylobacter jejuni RM1221 3231560 YP_179046.1 CDS CJE1051 NC_003912.7 985388 985501 R hypothetical protein complement(985388..985501) Campylobacter jejuni RM1221 3231561 YP_179047.1 CDS CJE1052 NC_003912.7 985554 986084 D hypothetical protein 985554..986084 Campylobacter jejuni RM1221 3231562 YP_179048.1 CDS CJE1053 NC_003912.7 986086 986409 D identified by similarity to GP:18389893; hypothetical protein 986086..986409 Campylobacter jejuni RM1221 3231563 YP_179049.1 CDS CJE1054 NC_003912.7 986550 986732 D identified by similarity to GP:29541252; hypothetical protein 986550..986732 Campylobacter jejuni RM1221 3231564 YP_179050.1 CDS CJE1055 NC_003912.7 986744 986875 R hypothetical protein complement(986744..986875) Campylobacter jejuni RM1221 3231565 YP_179051.1 CDS CJE1058 NC_003912.7 988820 989695 D methyltransferase 988820..989695 Campylobacter jejuni RM1221 3231567 YP_179052.1 CDS CJE1059 NC_003912.7 989768 990346 D identified by similarity to OMNI:NTL01HP00957; hypothetical protein 989768..990346 Campylobacter jejuni RM1221 3231568 YP_179053.1 CDS CJE1060 NC_003912.7 990347 990520 R lipoprotein complement(990347..990520) Campylobacter jejuni RM1221 3231569 YP_179054.1 CDS CJE1061 NC_003912.7 990529 991056 R identified by similarity to SP:P43270; match to protein family HMM PF00565; thermonuclease complement(990529..991056) Campylobacter jejuni RM1221 3231570 YP_179055.1 CDS pepD NC_003912.7 991124 992392 D identified by similarity to SP:P15288; match to protein family HMM PF01546; aminoacyl-histidine dipeptidase 991124..992392 Campylobacter jejuni RM1221 3231571 YP_179056.1 CDS cjaB NC_003912.7 992375 993622 R identified by similarity to GP:5823681; match to protein family HMM PF00083; transport protein CjaB complement(992375..993622) Campylobacter jejuni RM1221 3231572 YP_179057.1 CDS CJE1064 NC_003912.7 993663 994502 R identified by similarity to GB:AAD26123.1; similarity to GB:CAA71822.1; match to protein family HMM PF00497; surface antigen, CjaA complement(993663..994502) Campylobacter jejuni RM1221 3231573 YP_179058.1 CDS jlpA NC_003912.7 994722 995840 D identified by similarity to GP:11095281; surface-exposed lipoprotein 994722..995840 Campylobacter jejuni RM1221 3231574 YP_179059.1 CDS CJE1066 NC_003912.7 995932 996672 D identified by similarity to SP:P45491; match to protein family HMM PF03883; hypothetical protein 995932..996672 Campylobacter jejuni RM1221 3231575 YP_179060.1 CDS hipO NC_003912.7 996676 997827 R identified by similarity to GP:535810; match to protein family HMM PF01546; match to protein family HMM TIGR01891; hippurate hydrolase complement(996676..997827) Campylobacter jejuni RM1221 3231576 YP_179061.1 CDS CJE1068 NC_003912.7 997829 998440 R hypothetical protein complement(997829..998440) Campylobacter jejuni RM1221 3231577 YP_179062.1 CDS CJE1069 NC_003912.7 998544 998882 D identified by similarity to OMNI:PG2044; hypothetical protein 998544..998882 Campylobacter jejuni RM1221 3231578 YP_179063.1 CDS CJE1070 NC_003912.7 998885 999646 R hypothetical protein complement(998885..999646) Campylobacter jejuni RM1221 3231579 YP_179064.1 CDS CJE1071 NC_003912.7 999643 1000908 R identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur cluster-binding domain-containing protein complement(999643..1000908) Campylobacter jejuni RM1221 3231580 YP_179065.1 CDS hemN NC_003912.7 1000910 1002265 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1000910..1002265) Campylobacter jejuni RM1221 3231581 YP_179066.1 CDS CJE1073 NC_003912.7 1002252 1002743 R identified by similarity to SP:O25375; hypothetical protein complement(1002252..1002743) Campylobacter jejuni RM1221 3231582 YP_179067.1 CDS argF NC_003912.7 1002740 1003660 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(1002740..1003660) Campylobacter jejuni RM1221 3231583 YP_179068.1 CDS hemB NC_003912.7 1003657 1004640 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1003657..1004640) Campylobacter jejuni RM1221 3231584 YP_179069.1 CDS ribA NC_003912.7 1004698 1005258 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1004698..1005258 Campylobacter jejuni RM1221 3231585 YP_179070.1 CDS gidB NC_003912.7 1005259 1005825 D identified by similarity to SP:O25703; match to protein family HMM PF02527; match to protein family HMM TIGR00138; methyltransferase GidB 1005259..1005825 Campylobacter jejuni RM1221 3231586 YP_179071.1 CDS CJE1078 NC_003912.7 1005841 1006413 R identified by similarity to OMNI:NTL01HP00288; hypothetical protein complement(1005841..1006413) Campylobacter jejuni RM1221 3231587 YP_179072.1 CDS CJE1079 NC_003912.7 1006508 1007605 R identified by similarity to OMNI:PP3661; match to protein family HMM PF03601; hypothetical protein complement(1006508..1007605) Campylobacter jejuni RM1221 3231588 YP_179073.1 CDS CJE1080 NC_003912.7 1007718 1008599 D identified by similarity to GP:29898768; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1007718..1008599 Campylobacter jejuni RM1221 3231589 YP_179074.1 CDS rpoD NC_003912.7 1008679 1010547 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 1008679..1010547 Campylobacter jejuni RM1221 3231590 YP_179075.1 CDS sixA NC_003912.7 1010563 1011075 R phosphohistidine phosphatase SixA complement(1010563..1011075) Campylobacter jejuni RM1221 3231591 YP_179076.1 CDS CJE1083 NC_003912.7 1011072 1011590 R identified by match to protein family HMM PF01694; rhomboid family protein complement(1011072..1011590) Campylobacter jejuni RM1221 3231592 YP_179077.1 CDS CJE1084 NC_003912.7 1011689 1012105 D identified by similarity to GP:29341996; hypothetical protein 1011689..1012105 Campylobacter jejuni RM1221 3231593 YP_179078.1 CDS CJE1085 NC_003912.7 1012113 1013729 R identified by similarity to PIR:F64555; match to protein family HMM PF00004; match to protein family HMM PF01434; cell division protein FtsH complement(1012113..1013729) Campylobacter jejuni RM1221 3231594 YP_179079.1 CDS CJE1086 NC_003912.7 1013733 1014983 R identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; MiaB-like tRNA modifying enzyme complement(1013733..1014983) Campylobacter jejuni RM1221 3231595 YP_179080.1 CDS CJE1087 NC_003912.7 1014980 1016551 R identified by similarity to GP:12228607; match to protein family HMM PF00924; mechanosensitive ion channel family protein complement(1014980..1016551) Campylobacter jejuni RM1221 3231596 YP_179081.1 CDS aroB NC_003912.7 1016548 1017603 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(1016548..1017603) Campylobacter jejuni RM1221 3231597 YP_179082.1 CDS CJE1089 NC_003912.7 1017649 1019049 R identified by match to protein family HMM PF02080; TrkA domain-containing protein complement(1017649..1019049) Campylobacter jejuni RM1221 3231598 YP_179083.1 CDS tgt NC_003912.7 1019079 1020200 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1019079..1020200 Campylobacter jejuni RM1221 3231599 YP_179084.1 CDS CJE1091 NC_003912.7 1020202 1020969 D hypothetical protein 1020202..1020969 Campylobacter jejuni RM1221 3231600 YP_179085.1 CDS CJE1092 NC_003912.7 1021288 1021395 D hypothetical protein 1021288..1021395 Campylobacter jejuni RM1221 3231601 YP_179086.1 CDS CJE1093 NC_003912.7 1021521 1021871 D identified by similarity to PIR:A55205; hypothetical protein 1021521..1021871 Campylobacter jejuni RM1221 3231602 YP_179087.1 CDS CJE1094 NC_003912.7 1021914 1022585 R identified by similarity to OMNI:HP0675; match to protein family HMM PF00589; phage integrase family site specific recombinase complement(1021914..1022585) Campylobacter jejuni RM1221 3231603 YP_179088.1 CDS CJE1095 NC_003912.7 1022591 1022851 R hypothetical protein complement(1022591..1022851) Campylobacter jejuni RM1221 3231604 YP_179089.1 CDS CJE1096 NC_003912.7 1023081 1023311 D identified by similarity to GP:4049707; hypothetical protein 1023081..1023311 Campylobacter jejuni RM1221 3231605 YP_179090.1 CDS CJE1097 NC_003912.7 1023559 1023675 R hypothetical protein complement(1023559..1023675) Campylobacter jejuni RM1221 3231606 YP_179091.1 CDS CJE1098 NC_003912.7 1023863 1024006 R hypothetical protein complement(1023863..1024006) Campylobacter jejuni RM1221 3231607 YP_179092.1 CDS CJE1099 NC_003912.7 1024050 1024181 R hypothetical protein complement(1024050..1024181) Campylobacter jejuni RM1221 3231608 YP_179093.1 CDS CJE1100 NC_003912.7 1024202 1024489 R identified by match to protein family HMM PF05012; death-on-curing family protein complement(1024202..1024489) Campylobacter jejuni RM1221 3231609 YP_179094.1 CDS CJE1101 NC_003912.7 1024486 1024635 R hypothetical protein complement(1024486..1024635) Campylobacter jejuni RM1221 3231610 YP_179095.1 CDS CJE1102 NC_003912.7 1024907 1025134 D hypothetical protein 1024907..1025134 Campylobacter jejuni RM1221 3231611 YP_179096.1 CDS CJE1103 NC_003912.7 1025103 1025402 D identified by similarity to GP:20502858; match to protein family HMM PF03890; hypothetical protein 1025103..1025402 Campylobacter jejuni RM1221 3231612 YP_179097.1 CDS CJE1104 NC_003912.7 1025481 1025648 D hypothetical protein 1025481..1025648 Campylobacter jejuni RM1221 3231613 YP_179098.1 CDS CJE1105 NC_003912.7 1025669 1026223 R hypothetical protein complement(1025669..1026223) Campylobacter jejuni RM1221 3231614 YP_179099.1 CDS CJE1106 NC_003912.7 1026192 1026596 R hypothetical protein complement(1026192..1026596) Campylobacter jejuni RM1221 3231615 YP_179100.1 CDS CJE1107 NC_003912.7 1026778 1028367 R identified by similarity to GB:BAB93804.1; TraG-like protein complement(1026778..1028367) Campylobacter jejuni RM1221 3231616 YP_179101.1 CDS CJE1108 NC_003912.7 1028406 1028567 R hypothetical protein complement(1028406..1028567) Campylobacter jejuni RM1221 3231617 YP_179102.1 CDS CJE1109 NC_003912.7 1028815 1029615 R hypothetical protein complement(1028815..1029615) Campylobacter jejuni RM1221 3231618 YP_179103.1 CDS CJE1110 NC_003912.7 1029669 1030955 R hypothetical protein complement(1029669..1030955) Campylobacter jejuni RM1221 3231619 YP_179104.1 CDS CJE1111 NC_003912.7 1031031 1032317 R hypothetical protein complement(1031031..1032317) Campylobacter jejuni RM1221 3231620 YP_179105.1 CDS CJE1112 NC_003912.7 1032328 1033065 R hypothetical protein complement(1032328..1033065) Campylobacter jejuni RM1221 3231621 YP_179106.1 CDS CJE1113 NC_003912.7 1033187 1035799 R hypothetical protein complement(1033187..1035799) Campylobacter jejuni RM1221 3231622 YP_179107.1 CDS CJE1114 NC_003912.7 1035796 1037226 R hypothetical protein complement(1035796..1037226) Campylobacter jejuni RM1221 3231623 YP_179108.1 CDS CJE1115 NC_003912.7 1037234 1038736 R identified by similarity to OMNI:NTL01XA0571; hypothetical protein complement(1037234..1038736) Campylobacter jejuni RM1221 3231624 YP_179109.1 CDS CJE1116 NC_003912.7 1038746 1039051 R hypothetical protein complement(1038746..1039051) Campylobacter jejuni RM1221 3231625 YP_179110.1 CDS CJE1117 NC_003912.7 1039102 1039593 R identified by similarity to OMNI:NTL01XA0571; hypothetical protein complement(1039102..1039593) Campylobacter jejuni RM1221 3231626 YP_179111.1 CDS CJE1118 NC_003912.7 1040222 1040458 R hypothetical protein complement(1040222..1040458) Campylobacter jejuni RM1221 3231627 YP_179112.1 CDS CJE1119 NC_003912.7 1040538 1040756 D hypothetical protein 1040538..1040756 Campylobacter jejuni RM1221 3231628 YP_179113.1 CDS CJE1120 NC_003912.7 1040819 1040950 D hypothetical protein 1040819..1040950 Campylobacter jejuni RM1221 3231629 YP_179114.1 CDS CJE1122 NC_003912.7 1042357 1042590 R hypothetical protein complement(1042357..1042590) Campylobacter jejuni RM1221 3231631 YP_179115.1 CDS CJE1123 NC_003912.7 1042587 1042874 R hypothetical protein complement(1042587..1042874) Campylobacter jejuni RM1221 3231632 YP_179116.1 CDS CJE1124 NC_003912.7 1043022 1043564 R identified by similarity to OMNI:NTL01CE0348; hypothetical protein complement(1043022..1043564) Campylobacter jejuni RM1221 3231633 YP_179117.1 CDS CJE1125 NC_003912.7 1043806 1043925 R hypothetical protein complement(1043806..1043925) Campylobacter jejuni RM1221 3231634 YP_179118.1 CDS CJE1126 NC_003912.7 1043942 1044208 R hypothetical protein complement(1043942..1044208) Campylobacter jejuni RM1221 3231635 YP_179119.1 CDS CJE1127 NC_003912.7 1044211 1044771 R hypothetical protein complement(1044211..1044771) Campylobacter jejuni RM1221 3231636 YP_179120.1 CDS CJE1128 NC_003912.7 1044811 1044939 R hypothetical protein complement(1044811..1044939) Campylobacter jejuni RM1221 3231637 YP_179121.1 CDS CJE1129 NC_003912.7 1045351 1045557 R hypothetical protein complement(1045351..1045557) Campylobacter jejuni RM1221 3231638 YP_179122.1 CDS CJE1130 NC_003912.7 1045630 1046097 D hypothetical protein 1045630..1046097 Campylobacter jejuni RM1221 3231639 YP_179123.1 CDS CJE1131 NC_003912.7 1046112 1046321 D hypothetical protein 1046112..1046321 Campylobacter jejuni RM1221 3231640 YP_179124.1 CDS CJE1132 NC_003912.7 1046363 1046788 D hypothetical protein 1046363..1046788 Campylobacter jejuni RM1221 3231641 YP_179125.1 CDS CJE1133 NC_003912.7 1046785 1047834 D hypothetical protein 1046785..1047834 Campylobacter jejuni RM1221 3231642 YP_179126.1 CDS CJE1134 NC_003912.7 1047837 1048079 D hypothetical protein 1047837..1048079 Campylobacter jejuni RM1221 3231643 YP_179127.1 CDS CJE1135 NC_003912.7 1048069 1049937 D hypothetical protein 1048069..1049937 Campylobacter jejuni RM1221 3231644 YP_179128.1 CDS CJE1136 NC_003912.7 1049927 1050673 D hypothetical protein 1049927..1050673 Campylobacter jejuni RM1221 3231645 YP_179129.1 CDS CJE1137 NC_003912.7 1050718 1054650 D identified by similarity to GB:AAP76852.1; hypothetical protein 1050718..1054650 Campylobacter jejuni RM1221 3231646 YP_179130.1 CDS CJE1138 NC_003912.7 1054669 1055937 D hypothetical protein 1054669..1055937 Campylobacter jejuni RM1221 3231647 YP_179131.1 CDS CJE1139 NC_003912.7 1055941 1056840 R hypothetical protein complement(1055941..1056840) Campylobacter jejuni RM1221 3231648 YP_179132.1 CDS CJE1141 NC_003912.7 1057767 1059182 D hypothetical protein 1057767..1059182 Campylobacter jejuni RM1221 3231650 YP_179133.1 CDS CJE1142 NC_003912.7 1059374 1060270 D hypothetical protein 1059374..1060270 Campylobacter jejuni RM1221 3231651 YP_179134.1 CDS CJE1143 NC_003912.7 1060350 1061093 D hypothetical protein 1060350..1061093 Campylobacter jejuni RM1221 3231652 YP_179135.1 CDS CJE1144 NC_003912.7 1061080 1061184 D hypothetical protein 1061080..1061184 Campylobacter jejuni RM1221 3231653 YP_179136.1 CDS CJE1145 NC_003912.7 1061185 1061529 D hypothetical protein 1061185..1061529 Campylobacter jejuni RM1221 3231654 YP_179137.1 CDS CJE1146 NC_003912.7 1061519 1062595 D hypothetical protein 1061519..1062595 Campylobacter jejuni RM1221 3231655 YP_179138.1 CDS CJE1147 NC_003912.7 1062598 1063611 D hypothetical protein 1062598..1063611 Campylobacter jejuni RM1221 3231656 YP_179139.1 CDS CJE1148 NC_003912.7 1063657 1064526 D hypothetical protein 1063657..1064526 Campylobacter jejuni RM1221 3231657 YP_179140.1 CDS CJE1149 NC_003912.7 1064519 1064635 D hypothetical protein 1064519..1064635 Campylobacter jejuni RM1221 3231658 YP_179141.1 CDS CJE1150 NC_003912.7 1064610 1065374 D hypothetical protein 1064610..1065374 Campylobacter jejuni RM1221 3231659 YP_179142.1 CDS CJE1151 NC_003912.7 1065358 1068297 D hypothetical protein 1065358..1068297 Campylobacter jejuni RM1221 3231660 YP_179143.1 CDS CJE1152 NC_003912.7 1068290 1069546 D hypothetical protein 1068290..1069546 Campylobacter jejuni RM1221 3231661 YP_179144.1 CDS CJE1153 NC_003912.7 1069546 1070808 D hypothetical protein 1069546..1070808 Campylobacter jejuni RM1221 3231662 YP_179145.1 CDS CJE1154 NC_003912.7 1070821 1071033 D hypothetical protein 1070821..1071033 Campylobacter jejuni RM1221 3231663 YP_179146.1 CDS CJE1155 NC_003912.7 1071640 1071756 D hypothetical protein 1071640..1071756 Campylobacter jejuni RM1221 3231664 YP_179147.1 CDS CJE1156 NC_003912.7 1071875 1072339 R hypothetical protein complement(1071875..1072339) Campylobacter jejuni RM1221 3231665 YP_179148.1 CDS CJE1157 NC_003912.7 1072340 1075585 R identified by match to protein family HMM PF01578; CcmF/CcyK/CcsA family cytochrome C biogenesis protein complement(1072340..1075585) Campylobacter jejuni RM1221 3231666 YP_179149.1 CDS livF NC_003912.7 1075603 1076298 R identified by similarity to SP:P22731; match to protein family HMM PF00005; branched-chain amino acid ABC transporter ATP-binding protein complement(1075603..1076298) Campylobacter jejuni RM1221 3231667 YP_179150.1 CDS livG NC_003912.7 1076285 1077055 R identified by similarity to SP:P22730; match to protein family HMM PF00005; branched-chain amino acid ABC transporter ATP-binding protein complement(1076285..1077055) Campylobacter jejuni RM1221 3231668 YP_179151.1 CDS livM NC_003912.7 1077052 1078104 R identified by match to protein family HMM PF02653; high affinity branched-chain amino acid ABC transporter permease complement(1077052..1078104) Campylobacter jejuni RM1221 3231669 YP_179152.1 CDS livH NC_003912.7 1078104 1079000 R identified by similarity to SP:P08340; match to protein family HMM PF02653; branched-chain amino acid ABC transporter permease complement(1078104..1079000) Campylobacter jejuni RM1221 3231670 YP_179153.1 CDS CJE1162 NC_003912.7 1079019 1080128 R identified by similarity to SP:P02917; match to protein family HMM PF01094; high affinity branched-chain amino acid ABC transporter periplasmic amino acid-binding protein complement(1079019..1080128) Campylobacter jejuni RM1221 3231671 YP_179154.1 CDS CJE1163 NC_003912.7 1080150 1081265 R identified by similarity to SP:P17215; match to protein family HMM PF01094; high affinity branched-chain amino acid ABC transporter periplasmic amino acid-binding protein complement(1080150..1081265) Campylobacter jejuni RM1221 3231672 YP_179155.1 CDS CJE1164 NC_003912.7 1081296 1081730 R identified by match to protein family HMM PF00034; cytochrome C family protein complement(1081296..1081730) Campylobacter jejuni RM1221 3231673 YP_179156.1 CDS CJE1165 NC_003912.7 1081739 1081930 R identified by similarity to GP:9965827; porin domain-containing protein complement(1081739..1081930) Campylobacter jejuni RM1221 3231674 YP_179157.1 CDS CJE1166 NC_003912.7 1081983 1082489 R identified by similarity to OMNI:NTL01AA00210; hypothetical protein complement(1081983..1082489) Campylobacter jejuni RM1221 3231675 YP_179158.1 CDS asd NC_003912.7 1082498 1083529 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(1082498..1083529) Campylobacter jejuni RM1221 3231676 YP_179159.1 CDS CJE1168 NC_003912.7 1083529 1084830 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator complement(1083529..1084830) Campylobacter jejuni RM1221 3231677 YP_179160.1 CDS CJE1169 NC_003912.7 1084887 1085336 R hypothetical protein complement(1084887..1085336) Campylobacter jejuni RM1221 3231678 YP_179161.1 CDS CJE1170 NC_003912.7 1085312 1085827 R identified by similarity to OMNI:NTL01HP00768; match to protein family HMM PF04164; lipoprotein complement(1085312..1085827) Campylobacter jejuni RM1221 3231679 YP_179162.1 CDS gyrA NC_003912.7 1085894 1088482 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(1085894..1088482) Campylobacter jejuni RM1221 3231680 YP_179163.1 CDS ctsW NC_003912.7 1088523 1089098 R identified by similarity to PIR:A81305; transformation system protein complement(1088523..1089098) Campylobacter jejuni RM1221 3231681 YP_179164.1 CDS mapA NC_003912.7 1089095 1089739 R identified by similarity to SP:Q46122; outer membrane liproprotein MapA complement(1089095..1089739) Campylobacter jejuni RM1221 3231682 YP_179165.1 CDS lepA NC_003912.7 1089816 1091612 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1089816..1091612) Campylobacter jejuni RM1221 3231683 YP_179166.1 CDS CJE1176 NC_003912.7 1093009 1093749 D identified by similarity to OMNI:HP0606; hypothetical protein 1093009..1093749 Campylobacter jejuni RM1221 3231685 YP_179167.1 CDS CJE1177 NC_003912.7 1093752 1096769 D identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein 1093752..1096769 Campylobacter jejuni RM1221 3231686 YP_179168.1 CDS CJE1178 NC_003912.7 1096793 1097599 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1096793..1097599) Campylobacter jejuni RM1221 3231687 YP_179169.1 CDS CJE1179 NC_003912.7 1097600 1098319 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(1097600..1098319) Campylobacter jejuni RM1221 3231688 YP_179170.1 CDS CJE1180 NC_003912.7 1098319 1098570 R identified by similarity to GP:19979583; hypothetical protein complement(1098319..1098570) Campylobacter jejuni RM1221 3231689 YP_179171.1 CDS accC-1 NC_003912.7 1098574 1100019 R biotin carboxylase; catalyses the carboxylation of the carrier protein which then transfers the carboxyl group to form malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase subunit A complement(1098574..1100019) Campylobacter jejuni RM1221 3231690 YP_179172.1 CDS CJE1182 NC_003912.7 1100159 1101322 D identified by match to protein family HMM PF01098; cell cycle protein FtsW 1100159..1101322 Campylobacter jejuni RM1221 3231691 YP_179173.1 CDS murG NC_003912.7 1101319 1102347 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1101319..1102347 Campylobacter jejuni RM1221 3231692 YP_179174.1 CDS CJE1184 NC_003912.7 1102318 1103481 R identified by similarity to SP:P76242; hypothetical protein complement(1102318..1103481) Campylobacter jejuni RM1221 3231693 YP_179175.1 CDS CJE1185 NC_003912.7 1103489 1104340 R identified by similarity to OMNI:NTL02ML3528; hypothetical protein complement(1103489..1104340) Campylobacter jejuni RM1221 3231694 YP_179176.1 CDS CJE1186 NC_003912.7 1104403 1105293 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(1104403..1105293) Campylobacter jejuni RM1221 3231695 YP_179177.1 CDS CJE1187 NC_003912.7 1105290 1105895 R thiamine-phosphate pyrophosphorylase complement(1105290..1105895) Campylobacter jejuni RM1221 3231696 YP_179178.1 CDS thiH NC_003912.7 1105885 1107030 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(1105885..1107030) Campylobacter jejuni RM1221 3231697 YP_179179.1 CDS thiG NC_003912.7 1107033 1107809 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(1107033..1107809) Campylobacter jejuni RM1221 3231698 YP_179180.1 CDS thiF NC_003912.7 1107812 1108615 R catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF complement(1107812..1108615) Campylobacter jejuni RM1221 3231699 YP_179181.1 CDS thiS NC_003912.7 1108612 1108803 R identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS complement(1108612..1108803) Campylobacter jejuni RM1221 3231700 YP_179182.1 CDS dapE NC_003912.7 1108813 1109910 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(1108813..1109910) Campylobacter jejuni RM1221 3231701 YP_179183.1 CDS CJE1193 NC_003912.7 1109915 1110514 R identified by similarity to OMNI:NTL04PA0868; match to protein family HMM PF01810; amino acid transporter LysE complement(1109915..1110514) Campylobacter jejuni RM1221 3231702 YP_179184.1 CDS CJE1194 NC_003912.7 1110507 1111208 R identified by similarity to SP:P97013; match to protein family HMM PF02146; NAD-dependent deacetylase complement(1110507..1111208) Campylobacter jejuni RM1221 3231703 YP_179185.1 CDS CJE1195 NC_003912.7 1111251 1115282 R identified by similarity to GP:8572748; match to protein family HMM PF01420; type II restriction-modification enzyme complement(1111251..1115282) Campylobacter jejuni RM1221 3231704 YP_179186.1 CDS mutS NC_003912.7 1115291 1117498 R MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein complement(1115291..1117498) Campylobacter jejuni RM1221 3231705 YP_179187.1 CDS CJE1197 NC_003912.7 1117491 1117841 R identified by similarity to OMNI:HP0622; hypothetical protein complement(1117491..1117841) Campylobacter jejuni RM1221 3231706 YP_179188.1 CDS murC NC_003912.7 1117834 1119129 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1117834..1119129) Campylobacter jejuni RM1221 3231707 YP_179189.1 CDS CJE1199 NC_003912.7 1119253 1120035 R identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase complement(1119253..1120035) Campylobacter jejuni RM1221 3231708 YP_179190.1 CDS CJE1200 NC_003912.7 1120028 1120201 R identified by similarity to SP:Q9X290; exodeoxyribonuclease VII, small subunit complement(1120028..1120201) Campylobacter jejuni RM1221 3231709 YP_179191.1 CDS guaB NC_003912.7 1120198 1121655 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(1120198..1121655) Campylobacter jejuni RM1221 3231710 YP_179192.1 CDS gatA NC_003912.7 1121665 1123026 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1121665..1123026) Campylobacter jejuni RM1221 3231711 YP_179193.1 CDS CJE1203 NC_003912.7 1123023 1123133 R hypothetical protein complement(1123023..1123133) Campylobacter jejuni RM1221 3231712 YP_179194.1 CDS ileS NC_003912.7 1123127 1125880 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(1123127..1125880) Campylobacter jejuni RM1221 3231713 YP_179195.1 CDS CJE1205 NC_003912.7 1125979 1127067 D identified by similarity to GP:29338222; match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage-inducible domain-containing protein 1125979..1127067 Campylobacter jejuni RM1221 3231714 YP_179196.1 CDS CJE1206 NC_003912.7 1127079 1127504 D identified by match to protein family HMM PF00583; acetyltransferase 1127079..1127504 Campylobacter jejuni RM1221 3231715 YP_179197.1 CDS CJE1209 NC_003912.7 1128189 1128794 D identified by match to protein family HMM PF00881; nitroreductase 1128189..1128794 Campylobacter jejuni RM1221 3232504 YP_179198.1 CDS pgsA NC_003912.7 1128920 1129456 D identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1128920..1129456 Campylobacter jejuni RM1221 3231717 YP_179199.1 CDS CJE1211 NC_003912.7 1129453 1130559 D identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease 1129453..1130559 Campylobacter jejuni RM1221 3231718 YP_179200.1 CDS CJE1212 NC_003912.7 1130552 1131418 D identified by similarity to OMNI:NTL01CJ01014; match to protein family HMM PF04393; hypothetical protein 1130552..1131418 Campylobacter jejuni RM1221 3231719 YP_179201.1 CDS rpsF NC_003912.7 1131505 1131882 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1131505..1131882 Campylobacter jejuni RM1221 3231720 YP_179202.1 CDS ssb NC_003912.7 1131891 1132439 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1131891..1132439 Campylobacter jejuni RM1221 3231721 YP_179203.1 CDS rpsR NC_003912.7 1132450 1132710 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1132450..1132710 Campylobacter jejuni RM1221 3231722 YP_179204.1 CDS lon NC_003912.7 1132770 1135145 R identified by similarity to SP:P37945; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; ATP-dependent protease La complement(1132770..1135145) Campylobacter jejuni RM1221 3231723 YP_179205.1 CDS CJE1217 NC_003912.7 1135162 1135809 R identified by similarity to OMNI:HP1378; lipoprotein complement(1135162..1135809) Campylobacter jejuni RM1221 3231724 YP_179206.1 CDS CJE1218 NC_003912.7 1135970 1136359 D binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 1135970..1136359 Campylobacter jejuni RM1221 3231725 YP_179207.1 CDS proC NC_003912.7 1136359 1137090 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 1136359..1137090 Campylobacter jejuni RM1221 3231726 YP_179208.1 CDS ctsT NC_003912.7 1137087 1137389 D identified by similarity to PIR:H81310; transformation system protein 1137087..1137389 Campylobacter jejuni RM1221 3231727 YP_179209.1 CDS CJE1221 NC_003912.7 1137386 1138048 D hypothetical protein 1137386..1138048 Campylobacter jejuni RM1221 3231728 YP_179210.1 CDS CJE1222 NC_003912.7 1138045 1138497 D identified by similarity to SP:Q58789; hypothetical protein 1138045..1138497 Campylobacter jejuni RM1221 3231729 YP_179211.1 CDS hemD NC_003912.7 1138494 1139123 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(1138494..1139123) Campylobacter jejuni RM1221 3231730 YP_179212.1 CDS thiE NC_003912.7 1139101 1139733 R identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase complement(1139101..1139733) Campylobacter jejuni RM1221 3231731 YP_179213.1 CDS thiD NC_003912.7 1139723 1140535 R identified by match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase complement(1139723..1140535) Campylobacter jejuni RM1221 3231732 YP_179214.1 CDS CJE1226 NC_003912.7 1140532 1141218 R identified by similarity to GP:14325535; match to protein family HMM PF00633; match to protein family HMM PF00730; endonuclease III complement(1140532..1141218) Campylobacter jejuni RM1221 3231733 YP_179215.1 CDS CJE1227 NC_003912.7 1141215 1141976 R identified by similarity to OMNI:NTL01CJ01028; match to protein family HMM PF05673; hypothetical protein complement(1141215..1141976) Campylobacter jejuni RM1221 3231734 YP_179216.1 CDS mfd NC_003912.7 1141978 1144914 R identified by similarity to SP:P37474; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580; transcription-repair coupling factor complement(1141978..1144914) Campylobacter jejuni RM1221 3231735 YP_179217.1 CDS CJE1229 NC_003912.7 1144914 1145309 R identified by similarity to OMNI:NTL01CJ01030; match to protein family HMM PF04519; hypothetical protein complement(1144914..1145309) Campylobacter jejuni RM1221 3231736 YP_179218.1 CDS CJE1230 NC_003912.7 1145246 1146148 R identified by match to protein family HMM PF01551; M24/M37 family peptidase complement(1145246..1146148) Campylobacter jejuni RM1221 3231737 YP_179219.1 CDS folC NC_003912.7 1146135 1147307 R identified by match to protein family HMM TIGR01499; folC bifunctional protein complement(1146135..1147307) Campylobacter jejuni RM1221 3231738 YP_179220.1 CDS CJE1232 NC_003912.7 1147285 1148682 R hypothetical protein complement(1147285..1148682) Campylobacter jejuni RM1221 3231739 YP_179221.1 CDS CJE1233 NC_003912.7 1148666 1149178 R identified by similarity to OMNI:NTL01HP01442; lipoprotein complement(1148666..1149178) Campylobacter jejuni RM1221 3231740 YP_179222.1 CDS leuS NC_003912.7 1149175 1151604 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1149175..1151604) Campylobacter jejuni RM1221 3231741 YP_179223.1 CDS secF NC_003912.7 1151614 1152585 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(1151614..1152585) Campylobacter jejuni RM1221 3231742 YP_179224.1 CDS secD NC_003912.7 1152585 1154165 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(1152585..1154165) Campylobacter jejuni RM1221 3231743 YP_179225.1 CDS yajC NC_003912.7 1154158 1154430 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(1154158..1154430) Campylobacter jejuni RM1221 3231744 YP_179226.1 CDS cutE NC_003912.7 1154403 1155728 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 1154403..1155728 Campylobacter jejuni RM1221 3231745 YP_179227.1 CDS metK NC_003912.7 1155965 1157176 R methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1155965..1157176) Campylobacter jejuni RM1221 3231746 YP_179228.1 CDS CJE1240 NC_003912.7 1157301 1158524 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 1157301..1158524 Campylobacter jejuni RM1221 3231747 YP_179229.1 CDS pyrB NC_003912.7 1158534 1159421 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1158534..1159421 Campylobacter jejuni RM1221 3231748 YP_179230.1 CDS pepF NC_003912.7 1159425 1161146 D identified by similarity to SP:P94876; match to protein family HMM PF01432; match to protein family HMM TIGR00181; oligoendopeptidase F 1159425..1161146 Campylobacter jejuni RM1221 3231749 YP_179231.1 CDS CJE1243 NC_003912.7 1161140 1161577 D identified by similarity to OMNI:HP0469; hypothetical protein 1161140..1161577 Campylobacter jejuni RM1221 3231750 YP_179232.1 CDS CJE1244 NC_003912.7 1161574 1163649 D identified by similarity to SP:Q53727; match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD 1161574..1163649 Campylobacter jejuni RM1221 3231751 YP_179233.1 CDS truB NC_003912.7 1163646 1164464 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1163646..1164464 Campylobacter jejuni RM1221 3231752 YP_179234.1 CDS csrA NC_003912.7 1164458 1164685 D identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator 1164458..1164685 Campylobacter jejuni RM1221 3231753 YP_179235.1 CDS ispE NC_003912.7 1164682 1165449 D catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1164682..1165449 Campylobacter jejuni RM1221 3231754 YP_179236.1 CDS smpB NC_003912.7 1165446 1165898 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1165446..1165898 Campylobacter jejuni RM1221 3231755 YP_179237.1 CDS CJE1249 NC_003912.7 1165909 1166511 D identified by similarity to GB:AAO81196.1; thioredoxin 1165909..1166511 Campylobacter jejuni RM1221 3231756 YP_179238.1 CDS CJE1250 NC_003912.7 1166511 1166801 D identified by similarity to SP:Q9JZZ5; match to protein family HMM PF02617; hypothetical protein 1166511..1166801 Campylobacter jejuni RM1221 3231757 YP_179239.1 CDS clpA NC_003912.7 1166798 1168927 D identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent Clp protease ATP-binding subunit ClpA 1166798..1168927 Campylobacter jejuni RM1221 3231758 YP_179240.1 CDS aat NC_003912.7 1168902 1169549 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1168902..1169549 Campylobacter jejuni RM1221 3231759 YP_179241.1 CDS CJE1253 NC_003912.7 1169571 1170860 R identified by similarity to GB:AAQ59129.1; match to protein family HMM PF00015; match to protein family HMM PF00785; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein complement(1169571..1170860) Campylobacter jejuni RM1221 3231760 YP_179242.1 CDS CJE1254 NC_003912.7 1170941 1171567 R identified by match to protein family HMM PF01914; MarC family integral membrane protein complement(1170941..1171567) Campylobacter jejuni RM1221 3231761 YP_179243.1 CDS msrB NC_003912.7 1171582 1171941 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; a fusion protein of this enzyme with MsrA and thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; methionine sulfoxide reductase B complement(1171582..1171941) Campylobacter jejuni RM1221 3231762 YP_179244.1 CDS CJE1256 NC_003912.7 1172031 1172828 D identified by similarity to OMNI:NTL01CJ01057; match to protein family HMM PF04305; hypothetical protein 1172031..1172828 Campylobacter jejuni RM1221 3231763 YP_179245.1 CDS pssA NC_003912.7 1172819 1173547 R identified by similarity to SP:Q48269; match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(1172819..1173547) Campylobacter jejuni RM1221 3231764 YP_179246.1 CDS CJE1258 NC_003912.7 1173557 1174174 R phosphatidylserine decarboxylase-related protein complement(1173557..1174174) Campylobacter jejuni RM1221 3231765 YP_179247.1 CDS ftsH NC_003912.7 1174171 1176108 R identified by similarity to SP:P71408; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM TIGR01241; cell division protein FtsH complement(1174171..1176108) Campylobacter jejuni RM1221 3231766 YP_179248.1 CDS prmA NC_003912.7 1176112 1176957 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(1176112..1176957) Campylobacter jejuni RM1221 3231767 YP_179249.1 CDS cheY NC_003912.7 1176980 1177372 R identified by similarity to SP:P06143; match to protein family HMM PF00072; chemotaxis protein CheY complement(1176980..1177372) Campylobacter jejuni RM1221 3231768 YP_179250.1 CDS pglG NC_003912.7 1177485 1178378 R identified by similarity to GP:5771416; general glycosylation pathway protein complement(1177485..1178378) Campylobacter jejuni RM1221 3231769 YP_179251.1 CDS pglF NC_003912.7 1178378 1180150 R identified by similarity to GP:5771415; match to protein family HMM PF02719; general glycosylation pathway protein complement(1178378..1180150) Campylobacter jejuni RM1221 3231770 YP_179252.1 CDS pglE NC_003912.7 1180152 1181312 R identified by similarity to GP:5771414; match to protein family HMM PF01041; general glycosylation pathway protein complement(1180152..1181312) Campylobacter jejuni RM1221 3231771 YP_179253.1 CDS pglD NC_003912.7 1181410 1182021 R identified by similarity to GP:5771413; general glycosylation pathway protein complement(1181410..1182021) Campylobacter jejuni RM1221 3231772 YP_179254.1 CDS pglC NC_003912.7 1181987 1182589 R identified by similarity to GP:5771412; match to protein family HMM PF02397; general glycosylation pathway protein complement(1181987..1182589) Campylobacter jejuni RM1221 3231773 YP_179255.1 CDS pglA NC_003912.7 1182582 1183712 R identified by similarity to GB:AAD51384.1; match to protein family HMM PF00534; general glycosylation pathway protein complement(1182582..1183712) Campylobacter jejuni RM1221 3231774 YP_179256.1 CDS pglB NC_003912.7 1183722 1185863 R identified by similarity to GP:5771410; match to protein family HMM PF02516; general glycosylation pathway protein complement(1183722..1185863) Campylobacter jejuni RM1221 3231775 YP_179257.1 CDS pglJ NC_003912.7 1185867 1186964 R identified by similarity to GP:3413449; match to protein family HMM PF00534; general glycosylation pathway protein complement(1185867..1186964) Campylobacter jejuni RM1221 3231776 YP_179258.1 CDS pglI NC_003912.7 1186952 1187881 R identified by similarity to GP:3413448; match to protein family HMM PF00535; general glycosylation pathway protein complement(1186952..1187881) Campylobacter jejuni RM1221 3231777 YP_179259.1 CDS pglH NC_003912.7 1187874 1188950 R identified by similarity to GP:3413447; match to protein family HMM PF00534; general glycosylation pathway protein complement(1187874..1188950) Campylobacter jejuni RM1221 3231778 YP_179260.1 CDS wlaB NC_003912.7 1188950 1190644 R identified by similarity to OMNI:NTL01CJ01074; match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding/permease complement(1188950..1190644) Campylobacter jejuni RM1221 3231779 YP_179261.1 CDS galE NC_003912.7 1190638 1191624 R identified by similarity to SP:Q59083; match to protein family HMM PF01370; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase complement(1190638..1191624) Campylobacter jejuni RM1221 3231780 YP_179262.1 CDS wlaX NC_003912.7 1191683 1192477 R identified by similarity to GP:9714080; polysaccharide biosynthesis protein complement(1191683..1192477) Campylobacter jejuni RM1221 3231781 YP_179263.1 CDS waaC NC_003912.7 1192544 1193572 D identified by similarity to SP:P24173; match to protein family HMM PF01075; lipopolysaccharide heptosyltransferase I 1192544..1193572 Campylobacter jejuni RM1221 3231782 YP_179264.1 CDS waaM NC_003912.7 1193562 1194449 D acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; essential for survival; plays a role in cell responses to environmental changes; lipid A biosynthesis lauroyl acyltransferase 1193562..1194449 Campylobacter jejuni RM1221 3231783 YP_179265.1 CDS CJE1277 NC_003912.7 1194446 1195996 D identified by similarity to GP:15430479; match to protein family HMM PF00535; lipooligosaccharide biosynthesis glycosyltransferase 1194446..1195996 Campylobacter jejuni RM1221 3231784 YP_179266.1 CDS CJE1278 NC_003912.7 1195965 1196852 R identified by similarity to GP:22086357; match to protein family HMM PF00535; lipooligosaccharide biosynthesis galactosyltransferase complement(1195965..1196852) Campylobacter jejuni RM1221 3231785 YP_179267.1 CDS CJE1279 NC_003912.7 1196845 1198053 R identified by similarity to GP:22086358; match to protein family HMM PF00535; lipooligosaccharide biosynthesis glycosyltransferase complement(1196845..1198053) Campylobacter jejuni RM1221 3231786 YP_179268.1 CDS CJE1280 NC_003912.7 1198131 1199102 R identified by similarity to GB:AAM90646.1; match to protein family HMM PF00535; lipooligosaccharide biosynthesis galactosyltransferase complement(1198131..1199102) Campylobacter jejuni RM1221 3231787 YP_179269.1 CDS CJE1281 NC_003912.7 1199095 1199982 R hypothetical protein complement(1199095..1199982) Campylobacter jejuni RM1221 3231788 YP_179270.1 CDS waaV NC_003912.7 1200036 1200845 R identified by similarity to GP:22086361; match to protein family HMM PF00535; lipooligosaccharide biosynthesis glycosyltransferase complement(1200036..1200845) Campylobacter jejuni RM1221 3231789 YP_179271.1 CDS waaF NC_003912.7 1200904 1201854 D identified by similarity to OMNI:NTL01HP01108; match to protein family HMM PF01075; ADP-heptose--LPS heptosyltransferase II 1200904..1201854 Campylobacter jejuni RM1221 3231790 YP_179272.1 CDS CJE1284 NC_003912.7 1201840 1202604 R identified by similarity to GP:12802847; match to protein family HMM PF01755; lipooligosaccharide biosynthesis glycosyltransferase complement(1201840..1202604) Campylobacter jejuni RM1221 3231791 YP_179273.1 CDS gmhA-1 NC_003912.7 1202604 1203164 R catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase complement(1202604..1203164) Campylobacter jejuni RM1221 3231792 YP_179274.1 CDS hldE NC_003912.7 1203161 1204546 R identified by similarity to SP:P76658; match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase complement(1203161..1204546) Campylobacter jejuni RM1221 3231793 YP_179275.1 CDS waaD NC_003912.7 1204539 1205492 R identified by similarity to SP:P17963; match to protein family HMM PF01370; ADP-L-glycero-D-mannoheptose-6-epimerase complement(1204539..1205492) Campylobacter jejuni RM1221 3231794 YP_179276.1 CDS CJE1288 NC_003912.7 1205493 1206020 R identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; hydrolase complement(1205493..1206020) Campylobacter jejuni RM1221 3231795 YP_179277.1 CDS cyf NC_003912.7 1206135 1206437 D identified by similarity to SP:P04032; match to protein family HMM PF00034; cytochrome C553 1206135..1206437 Campylobacter jejuni RM1221 3231796 YP_179278.1 CDS CJE1290 NC_003912.7 1206460 1206666 R identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847; cytochrome oxidase maturation protein, cbb3-type complement(1206460..1206666) Campylobacter jejuni RM1221 3231797 YP_179279.1 CDS CJE1291 NC_003912.7 1206663 1209014 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; ATPase P complement(1206663..1209014) Campylobacter jejuni RM1221 3231798 YP_179280.1 CDS rho NC_003912.7 1209129 1210427 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1209129..1210427 Campylobacter jejuni RM1221 3231799 YP_179281.1 CDS dnaX NC_003912.7 1210431 1211960 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma/tau 1210431..1211960 Campylobacter jejuni RM1221 3231800 YP_179282.1 CDS CJE1295 NC_003912.7 1212547 1214646 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(1212547..1214646) Campylobacter jejuni RM1221 3231802 YP_179283.1 CDS CJE1296 NC_003912.7 1214646 1214840 R hypothetical protein complement(1214646..1214840) Campylobacter jejuni RM1221 3231803 YP_179284.1 CDS CJE1297 NC_003912.7 1214830 1215780 R identified by similarity to OMNI:NTL02SA2153; match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein complement(1214830..1215780) Campylobacter jejuni RM1221 3231804 YP_179285.1 CDS CJE1298 NC_003912.7 1215856 1216119 R identified by similarity to OMNI:NTL04PA0392; hypothetical protein complement(1215856..1216119) Campylobacter jejuni RM1221 3231805 YP_179286.1 CDS CJE1299 NC_003912.7 1216189 1216683 R identified by similarity to GP:29338279; hypothetical protein complement(1216189..1216683) Campylobacter jejuni RM1221 3231806 YP_179287.1 CDS CJE1300 NC_003912.7 1216680 1217456 R identified by similarity to GP:29338280; hypothetical protein complement(1216680..1217456) Campylobacter jejuni RM1221 3231807 YP_179288.1 CDS ldh NC_003912.7 1217523 1218449 D identified by similarity to SP:Q60009; match to protein family HMM PF00056; match to protein family HMM PF02866; L-lactate dehydrogenase 1217523..1218449 Campylobacter jejuni RM1221 3231808 YP_179289.1 CDS CJE1302 NC_003912.7 1218412 1219050 R identified by match to protein family HMM PF00597; DedA family protein complement(1218412..1219050) Campylobacter jejuni RM1221 3231809 YP_179290.1 CDS CJE1303 NC_003912.7 1219131 1219358 R identified by similarity to GP:29341730; hypothetical protein complement(1219131..1219358) Campylobacter jejuni RM1221 3231810 YP_179291.1 CDS CJE1304 NC_003912.7 1219369 1220799 R identified by similarity to OMNI:SO4143; hypothetical protein complement(1219369..1220799) Campylobacter jejuni RM1221 3231811 YP_179292.1 CDS ppiB NC_003912.7 1220963 1221445 R identified by similarity to SP:P35137; match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B complement(1220963..1221445) Campylobacter jejuni RM1221 3231812 YP_179293.1 CDS CJE1306 NC_003912.7 1221455 1222162 R identified by similarity to SP:Q9ZMR9; match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein complement(1221455..1222162) Campylobacter jejuni RM1221 3231813 YP_179294.1 CDS CJE1307 NC_003912.7 1222267 1222608 D identified by match to protein family HMM PF00893; SMR family multidrug efflux pump 1222267..1222608 Campylobacter jejuni RM1221 3231814 YP_179295.1 CDS CJE1308 NC_003912.7 1222608 1222916 D identified by similarity to SP:O31791; match to protein family HMM PF00893; SMR family multidrug efflux pump 1222608..1222916 Campylobacter jejuni RM1221 3231815 YP_179296.1 CDS argS NC_003912.7 1222934 1224526 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(1222934..1224526) Campylobacter jejuni RM1221 3231816 YP_179297.1 CDS CJE1310 NC_003912.7 1224538 1224777 R identified by similarity to SP:P25895; match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin arginine-targeting protein translocase complement(1224538..1224777) Campylobacter jejuni RM1221 3231817 YP_179298.1 CDS gmk NC_003912.7 1224779 1225396 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1224779..1225396) Campylobacter jejuni RM1221 3231818 YP_179299.1 CDS CJE1312 NC_003912.7 1225399 1227042 R identified by similarity to OMNI:NTL01HP00303; hypothetical protein complement(1225399..1227042) Campylobacter jejuni RM1221 3231819 YP_179300.1 CDS fliR NC_003912.7 1227099 1227866 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(1227099..1227866) Campylobacter jejuni RM1221 3231820 YP_179301.1 CDS CJE1314 NC_003912.7 1227853 1228488 R identified by similarity to OMNI:HP0179; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1227853..1228488) Campylobacter jejuni RM1221 3231821 YP_179302.1 CDS tsf NC_003912.7 1228501 1229574 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1228501..1229574) Campylobacter jejuni RM1221 3231822 YP_179303.1 CDS rpsB NC_003912.7 1229574 1230365 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1229574..1230365) Campylobacter jejuni RM1221 3231823 YP_179304.1 CDS CJE1317 NC_003912.7 1230481 1231644 R identified by match to protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase complement(1230481..1231644) Campylobacter jejuni RM1221 3231824 YP_179305.1 CDS petC NC_003912.7 1231772 1232896 R identified by match to protein family HMM PF00034; ubiquinol--cytochrome C reductase, cytochrome C1 subunit complement(1231772..1232896) Campylobacter jejuni RM1221 3231825 YP_179306.1 CDS petB NC_003912.7 1232893 1234143 R identified by similarity to SP:P23134; match to protein family HMM PF00032; match to protein family HMM PF00033; ubiquinol--cytochrome C reductase, cytochrome b subunit complement(1232893..1234143) Campylobacter jejuni RM1221 3231826 YP_179307.1 CDS petA NC_003912.7 1234145 1234648 R identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416; ubiquinol--cytochrome C reductase, iron-sulfur subunit complement(1234145..1234648) Campylobacter jejuni RM1221 3231827 YP_179308.1 CDS arsB NC_003912.7 1234739 1236025 R identified by similarity to SP:P37310; match to protein family HMM PF02040; arsenical pump membrane protein complement(1234739..1236025) Campylobacter jejuni RM1221 3231828 YP_179309.1 CDS gidA NC_003912.7 1236026 1237885 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(1236026..1237885) Campylobacter jejuni RM1221 3231829 YP_179310.1 CDS CJE1323 NC_003912.7 1237973 1238470 R identified by similarity to SP:P50466; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein complement(1237973..1238470) Campylobacter jejuni RM1221 3231830 YP_179311.1 CDS CJE1324 NC_003912.7 1238488 1239867 R identified by similarity to PIR:C64532; match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(1238488..1239867) Campylobacter jejuni RM1221 3231831 YP_179312.1 CDS CJE1325 NC_003912.7 1239984 1240478 R identified by similarity to SP:P50466; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein complement(1239984..1240478) Campylobacter jejuni RM1221 3231832 YP_179313.1 CDS dctA NC_003912.7 1240825 1242123 D identified by similarity to SP:P37312; match to protein family HMM PF00375; C4-dicarboxylate transport protein 1240825..1242123 Campylobacter jejuni RM1221 3231833 YP_179314.1 CDS CJE1327 NC_003912.7 1242120 1242926 R hypothetical protein complement(1242120..1242926) Campylobacter jejuni RM1221 3231834 YP_179315.1 CDS CJE1328 NC_003912.7 1243068 1244594 D identified by match to protein family HMM PF01384; phosphate transporter family protein 1243068..1244594 Campylobacter jejuni RM1221 3231835 YP_179316.1 CDS CJE1329 NC_003912.7 1244602 1245780 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(1244602..1245780) Campylobacter jejuni RM1221 3231836 YP_179317.1 CDS gpsA NC_003912.7 1245790 1246683 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(1245790..1246683) Campylobacter jejuni RM1221 3231837 YP_179318.1 CDS gatB NC_003912.7 1246683 1248101 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1246683..1248101) Campylobacter jejuni RM1221 3231838 YP_179319.1 CDS luxS NC_003912.7 1248216 1248710 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1248216..1248710 Campylobacter jejuni RM1221 3231839 YP_179320.1 CDS CJE1333 NC_003912.7 1249021 1250013 D identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase family oxidoreductase 1249021..1250013 Campylobacter jejuni RM1221 3231840 YP_179321.1 CDS CJE1334 NC_003912.7 1250006 1250794 D identified by similarity to OMNI:PP5165; match to protein family HMM PF03180; NLPA family lipoprotein 1250006..1250794 Campylobacter jejuni RM1221 3231841 YP_179322.1 CDS metE NC_003912.7 1250806 1253070 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 1250806..1253070 Campylobacter jejuni RM1221 3231842 YP_179323.1 CDS metF NC_003912.7 1253080 1253928 D identified by similarity to GB:AAF64321.1; match to protein family HMM PF02219; 5,10-methylenetetrahydrofolate reductase 1253080..1253928 Campylobacter jejuni RM1221 3231843 YP_179324.1 CDS CJE1337 NC_003912.7 1253950 1254141 R hypothetical protein complement(1253950..1254141) Campylobacter jejuni RM1221 3231844 YP_179325.1 CDS atpB NC_003912.7 1254138 1254818 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(1254138..1254818) Campylobacter jejuni RM1221 3231845 YP_179326.1 CDS radA NC_003912.7 1254887 1256227 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1254887..1256227) Campylobacter jejuni RM1221 3231846 YP_179327.1 CDS ftsY NC_003912.7 1256227 1257093 R identified by similarity to SP:P10121; match to protein family HMM PF00448; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY complement(1256227..1257093) Campylobacter jejuni RM1221 3231847 YP_179328.1 CDS CJE1341 NC_003912.7 1257093 1257650 R identified by similarity to GP:14669467; lipoprotein complement(1257093..1257650) Campylobacter jejuni RM1221 3231848 YP_179329.1 CDS CJE1342 NC_003912.7 1257733 1258359 D identified by similarity to GB:AAP77185.1; hypothetical protein 1257733..1258359 Campylobacter jejuni RM1221 3231849 YP_179330.1 CDS CJE1343 NC_003912.7 1258280 1259833 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1258280..1259833 Campylobacter jejuni RM1221 3231850 YP_179331.1 CDS CJE1344 NC_003912.7 1259842 1260399 D identified by match to protein family HMM PF00597; DedA family protein 1259842..1260399 Campylobacter jejuni RM1221 3231851 YP_179332.1 CDS CJE1345 NC_003912.7 1260399 1261658 D identified by similarity to OMNI:NTL01HP01269; match to protein family HMM PF03772; match to protein family HMM TIGR00360; ComEC/Rec2 family protein 1260399..1261658 Campylobacter jejuni RM1221 3232510 YP_179333.1 CDS rbn NC_003912.7 1261602 1262408 R identified by similarity to SP:P32146; match to protein family HMM PF03631; match to protein family HMM TIGR00765; ribonuclease BN complement(1261602..1262408) Campylobacter jejuni RM1221 3231852 YP_179334.1 CDS glcD NC_003912.7 1262412 1263794 R identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase, subunit GlcD complement(1262412..1263794) Campylobacter jejuni RM1221 3231853 YP_179335.1 CDS CJE1348 NC_003912.7 1263797 1264507 R identified by similarity to OMNI:NTL01HP00454; hypothetical protein complement(1263797..1264507) Campylobacter jejuni RM1221 3231854 YP_179336.1 CDS CJE1349 NC_003912.7 1264515 1264616 R hypothetical protein complement(1264515..1264616) Campylobacter jejuni RM1221 3231855 YP_179337.1 CDS CJE1350 NC_003912.7 1264644 1265804 D identified by match to protein family HMM PF01551; M24/M37 family peptidase 1264644..1265804 Campylobacter jejuni RM1221 3231856 YP_179338.1 CDS CJE1351 NC_003912.7 1265801 1266004 R hypothetical protein complement(1265801..1266004) Campylobacter jejuni RM1221 3231857 YP_179339.1 CDS CJE1352 NC_003912.7 1266006 1266686 R identified by similarity to SP:P94338; match to protein family HMM PF02578; hypothetical protein complement(1266006..1266686) Campylobacter jejuni RM1221 3231858 YP_179340.1 CDS ribE NC_003912.7 1266650 1267261 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1266650..1267261) Campylobacter jejuni RM1221 3231859 YP_179341.1 CDS CJE1354 NC_003912.7 1267270 1269810 R identified by similarity to OMNI:NTL01HP01014; hypothetical protein complement(1267270..1269810) Campylobacter jejuni RM1221 3231860 YP_179342.1 CDS groES NC_003912.7 1269972 1270232 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; molecular chaperone GroES 1269972..1270232 Campylobacter jejuni RM1221 3231861 YP_179343.1 CDS groEL NC_003912.7 1270253 1271890 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 1270253..1271890 Campylobacter jejuni RM1221 3231862 YP_179344.1 CDS CJE1357 NC_003912.7 1271933 1273123 R identified by similarity to GP:4104349; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(1271933..1273123) Campylobacter jejuni RM1221 3231863 YP_179345.1 CDS CJE1358 NC_003912.7 1273116 1273781 R identified by similarity to GP:13177580; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(1273116..1273781) Campylobacter jejuni RM1221 3231864 YP_179346.1 CDS CJE1359 NC_003912.7 1273929 1274528 D identified by match to protein family HMM PF01814; hemerythrin family non-heme iron protein 1273929..1274528 Campylobacter jejuni RM1221 3231865 YP_179347.1 CDS CJE1360 NC_003912.7 1274539 1274787 D identified by similarity to OMNI:NTL01XF01697; hypothetical protein 1274539..1274787 Campylobacter jejuni RM1221 3231866 YP_179348.1 CDS CJE1361 NC_003912.7 1275045 1276292 R identified by similarity to OMNI:NTL01HP00150; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(1275045..1276292) Campylobacter jejuni RM1221 3231867 YP_179349.1 CDS CJE1362 NC_003912.7 1276289 1276963 R identified by similarity to OMNI:SA0019; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(1276289..1276963) Campylobacter jejuni RM1221 3231868 YP_179350.1 CDS htrA NC_003912.7 1277039 1278457 R identified by similarity to SP:P09376; match to protein family HMM PF00089; match to protein family HMM PF00595; protease DO complement(1277039..1278457) Campylobacter jejuni RM1221 3231869 YP_179351.1 CDS dnaJ-1 NC_003912.7 1278658 1279551 D identified by similarity to SP:P17631; match to protein family HMM PF00226; match to protein family HMM PF01556; co-molecular chaperone DnaJ 1278658..1279551 Campylobacter jejuni RM1221 3231870 YP_179352.1 CDS CJE1365 NC_003912.7 1279567 1279941 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 1279567..1279941 Campylobacter jejuni RM1221 3231871 YP_179353.1 CDS CJE1366 NC_003912.7 1279948 1281573 D identified by match to protein family HMM PF00999; match to protein family HMM PF02254; sodium/hydrogen exchanger family protein 1279948..1281573 Campylobacter jejuni RM1221 3231872 YP_179354.1 CDS CJE1367 NC_003912.7 1281583 1281915 D hypothetical protein 1281583..1281915 Campylobacter jejuni RM1221 3231873 YP_179355.1 CDS CJE1368 NC_003912.7 1281912 1282532 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD-superfamily hydrolase, subfamily IA, variant 1 family protein 1281912..1282532 Campylobacter jejuni RM1221 3231874 YP_179356.1 CDS glyS NC_003912.7 1282588 1284582 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1282588..1284582 Campylobacter jejuni RM1221 3231875 YP_179357.1 CDS CJE1370 NC_003912.7 1284579 1285400 D identified by match to protein family HMM PF01551; M24/M37 family peptidase 1284579..1285400 Campylobacter jejuni RM1221 3231876 YP_179358.1 CDS CJE1371 NC_003912.7 1285397 1286347 D identified by similarity to OMNI:HP0812; match to protein family HMM PF02636; hypothetical protein 1285397..1286347 Campylobacter jejuni RM1221 3231877 YP_179359.1 CDS CJE1372 NC_003912.7 1286344 1287318 R identified by match to protein family HMM PF02541; Ppx/GppA family phosphatase complement(1286344..1287318) Campylobacter jejuni RM1221 3231878 YP_179360.1 CDS pdxJ NC_003912.7 1287374 1288147 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1287374..1288147 Campylobacter jejuni RM1221 3231879 YP_179361.1 CDS pdxA NC_003912.7 1288144 1289238 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 1288144..1289238 Campylobacter jejuni RM1221 3231880 YP_179362.1 CDS CJE1375 NC_003912.7 1289228 1289539 R hypothetical protein complement(1289228..1289539) Campylobacter jejuni RM1221 3231881 YP_179363.1 CDS CJE1376 NC_003912.7 1289512 1289829 R hypothetical protein complement(1289512..1289829) Campylobacter jejuni RM1221 3231882 YP_179364.1 CDS CJE1377 NC_003912.7 1289942 1291141 D identified by similarity to SP:P77389; transporter 1289942..1291141 Campylobacter jejuni RM1221 3231883 YP_179365.1 CDS CJE1378 NC_003912.7 1291197 1291517 D hypothetical protein 1291197..1291517 Campylobacter jejuni RM1221 3231884 YP_179366.1 CDS hemE NC_003912.7 1291701 1292723 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1291701..1292723 Campylobacter jejuni RM1221 3231885 YP_179367.1 CDS CJE1380 NC_003912.7 1292720 1293622 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1292720..1293622 Campylobacter jejuni RM1221 3231886 YP_179368.1 CDS CJE1381 NC_003912.7 1293619 1294815 R hypothetical protein complement(1293619..1294815) Campylobacter jejuni RM1221 3231887 YP_179369.1 CDS uvrC NC_003912.7 1294817 1296619 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(1294817..1296619) Campylobacter jejuni RM1221 3231888 YP_179370.1 CDS CJE1383 NC_003912.7 1296612 1297106 R hypothetical protein complement(1296612..1297106) Campylobacter jejuni RM1221 3231889 YP_179371.1 CDS CJE1384 NC_003912.7 1297110 1297241 D hypothetical protein 1297110..1297241 Campylobacter jejuni RM1221 3231890 YP_179372.1 CDS guaA NC_003912.7 1297245 1298780 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1297245..1298780 Campylobacter jejuni RM1221 3231891 YP_179373.1 CDS CJE1386 NC_003912.7 1298866 1300326 D hypothetical protein 1298866..1300326 Campylobacter jejuni RM1221 3231892 YP_179374.1 CDS purD NC_003912.7 1300566 1301816 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1300566..1301816 Campylobacter jejuni RM1221 3231893 YP_179375.1 CDS CJE1388 NC_003912.7 1301813 1302265 D identified by similarity to OMNI:VC0842; hypothetical protein 1301813..1302265 Campylobacter jejuni RM1221 3231894 YP_179376.1 CDS CJE1389 NC_003912.7 1302255 1304303 D identified by similarity to SP:Q9KUR9; match to protein family HMM PF04453; organic solvent tolerance protein 1302255..1304303 Campylobacter jejuni RM1221 3231895 YP_179377.1 CDS pnp NC_003912.7 1304373 1306532 D identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR01369; polynucleotide phosphorylase/polyadenylase 1304373..1306532 Campylobacter jejuni RM1221 3231896 YP_179378.1 CDS CJE1391 NC_003912.7 1306529 1307011 D identified by similarity to OMNI:NTL01OI1065; hypothetical protein 1306529..1307011 Campylobacter jejuni RM1221 3231897 YP_179379.1 CDS CJE1392 NC_003912.7 1307062 1307724 R hypothetical protein complement(1307062..1307724) Campylobacter jejuni RM1221 3231898 YP_179380.1 CDS CJE1394 NC_003912.7 1308976 1309431 D identified by match to protein family HMM PF01451; low molecular weight phosphotyrosine protein phosphatase 1308976..1309431 Campylobacter jejuni RM1221 3231900 YP_179381.1 CDS porA NC_003912.7 1309683 1310978 D identified by similarity to SP:P80672; match to protein family HMM PF05538; major outer membrane protein 1309683..1310978 Campylobacter jejuni RM1221 3231901 YP_179382.1 CDS dnaJ-2 NC_003912.7 1311094 1312215 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(1311094..1312215) Campylobacter jejuni RM1221 3231902 YP_179383.1 CDS racR NC_003912.7 1312372 1313043 D identified by similarity to SP:P30846; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1312372..1313043 Campylobacter jejuni RM1221 3231903 YP_179384.1 CDS racS NC_003912.7 1313040 1314275 D identified by similarity to OMNI:NTL01HP00150; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1313040..1314275 Campylobacter jejuni RM1221 3231904 YP_179385.1 CDS recR NC_003912.7 1314275 1314847 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1314275..1314847 Campylobacter jejuni RM1221 3231905 YP_179386.1 CDS hydD NC_003912.7 1314844 1315380 R identified by similarity to SP:P37182; match to protein family HMM PF01750; match to protein family HMM TIGR00072; hydrogenase maturation protease HydD complement(1314844..1315380) Campylobacter jejuni RM1221 3231906 YP_179387.1 CDS hydC NC_003912.7 1315377 1316093 R identified by similarity to SP:P31875; match to protein family HMM PF01292; quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit complement(1315377..1316093) Campylobacter jejuni RM1221 3231907 YP_179388.1 CDS hydB NC_003912.7 1316080 1317795 R identified by similarity to SP:P31883; match to protein family HMM PF00374; quinone-reactive Ni/Fe-hydrogenase, large subunit complement(1316080..1317795) Campylobacter jejuni RM1221 3231908 YP_179389.1 CDS hydA NC_003912.7 1317798 1318880 R identified by similarity to SP:P31884; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; quinone-reactive Ni/Fe-hydrogenase, small subunit complement(1317798..1318880) Campylobacter jejuni RM1221 3231909 YP_179390.1 CDS mnmC NC_003912.7 1319058 1320899 R catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase complement(1319058..1320899) Campylobacter jejuni RM1221 3231910 YP_179391.1 CDS CJE1405 NC_003912.7 1320896 1322875 R identified by similarity to SP:P36548; match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase complement(1320896..1322875) Campylobacter jejuni RM1221 3231911 YP_179392.1 CDS CJE1406 NC_003912.7 1322875 1323966 R identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase family oxidoreductase complement(1322875..1323966) Campylobacter jejuni RM1221 3231912 YP_179393.1 CDS tyrS NC_003912.7 1323963 1325168 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(1323963..1325168) Campylobacter jejuni RM1221 3231913 YP_179394.1 CDS CJE1408 NC_003912.7 1325180 1327375 R identified by similarity to SP:O54408; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; RelA/SpoT family protein complement(1325180..1327375) Campylobacter jejuni RM1221 3231914 YP_179395.1 CDS rpoZ NC_003912.7 1327359 1327583 R Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(1327359..1327583) Campylobacter jejuni RM1221 3231915 YP_179396.1 CDS pyrH NC_003912.7 1327594 1328313 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1327594..1328313) Campylobacter jejuni RM1221 3231916 YP_179397.1 CDS CJE1411 NC_003912.7 1328365 1329558 R identified by match to protein family HMM PF01551; M24/M37 family peptidase complement(1328365..1329558) Campylobacter jejuni RM1221 3231917 YP_179398.1 CDS CJE1412 NC_003912.7 1329555 1330361 R identified by similarity to OMNI:NTL01CA2621; cell division protein FtsX complement(1329555..1330361) Campylobacter jejuni RM1221 3231918 YP_179399.1 CDS lolD NC_003912.7 1330348 1331013 R identified by similarity to SP:P75957; match to protein family HMM PF00005; lipoprotein releasing system ATP-binding protein LolD complement(1330348..1331013) Campylobacter jejuni RM1221 3231919 YP_179400.1 CDS trmB NC_003912.7 1331083 1332261 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(1331083..1332261) Campylobacter jejuni RM1221 3231920 YP_179401.1 CDS CJE1415 NC_003912.7 1332261 1333493 R identified by similarity to OMNI:NTL01CJ01222; match to protein family HMM PF00041; fibronectin type III domain-containing protein complement(1332261..1333493) Campylobacter jejuni RM1221 3231921 YP_179402.1 CDS CJE1416 NC_003912.7 1333441 1334409 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D complement(1333441..1334409) Campylobacter jejuni RM1221 3231922 YP_179403.1 CDS CJE1417 NC_003912.7 1334487 1335587 D identified by similarity to PIR:C81336; match to protein family HMM PF01098; rod shape-determining protein RodA 1334487..1335587 Campylobacter jejuni RM1221 3231923 YP_179404.1 CDS CJE1418 NC_003912.7 1335926 1337101 D identified by similarity to GB:AAN54532.1; match to protein family HMM PF00589; phage integrase family site specific recombinase 1335926..1337101 Campylobacter jejuni RM1221 3231924 YP_179405.1 CDS CJE1419 NC_003912.7 1337098 1337304 R DNA binding protein complement(1337098..1337304) Campylobacter jejuni RM1221 3231925 YP_179406.1 CDS CJE1420 NC_003912.7 1337306 1337659 R hypothetical protein complement(1337306..1337659) Campylobacter jejuni RM1221 3231926 YP_179407.1 CDS CJE1421 NC_003912.7 1337677 1338432 R identified by similarity to GB:CAA65779.1; match to protein family HMM PF01555; site-specific DNA-methyltransferase complement(1337677..1338432) Campylobacter jejuni RM1221 3231927 YP_179408.1 CDS CJE1422 NC_003912.7 1338410 1338676 R emm-like protein complement(1338410..1338676) Campylobacter jejuni RM1221 3231928 YP_179409.1 CDS CJE1423 NC_003912.7 1338660 1339031 R hypothetical protein complement(1338660..1339031) Campylobacter jejuni RM1221 3231929 YP_179410.1 CDS CJE1424 NC_003912.7 1339032 1339256 R hypothetical protein complement(1339032..1339256) Campylobacter jejuni RM1221 3231930 YP_179411.1 CDS CJE1425 NC_003912.7 1339265 1339759 R hypothetical protein complement(1339265..1339759) Campylobacter jejuni RM1221 3231931 YP_179412.1 CDS CJE1426 NC_003912.7 1339963 1340277 R hypothetical protein complement(1339963..1340277) Campylobacter jejuni RM1221 3231932 YP_179413.1 CDS CJE1427 NC_003912.7 1340356 1340676 R hypothetical protein complement(1340356..1340676) Campylobacter jejuni RM1221 3231933 YP_179414.1 CDS CJE1428 NC_003912.7 1340669 1340773 R hypothetical protein complement(1340669..1340773) Campylobacter jejuni RM1221 3231934 YP_179415.1 CDS CJE1429 NC_003912.7 1341064 1341300 R identified by similarity to GP:28203221; hypothetical protein complement(1341064..1341300) Campylobacter jejuni RM1221 3231935 YP_179416.1 CDS CJE1430 NC_003912.7 1341314 1342081 R identified by similarity to GP:23452767; RloG protein complement(1341314..1342081) Campylobacter jejuni RM1221 3231936 YP_179417.1 CDS CJE1431 NC_003912.7 1342098 1342247 R hypothetical protein complement(1342098..1342247) Campylobacter jejuni RM1221 3231937 YP_179418.1 CDS CJE1432 NC_003912.7 1342219 1342347 R hypothetical protein complement(1342219..1342347) Campylobacter jejuni RM1221 3231938 YP_179419.1 CDS CJE1433 NC_003912.7 1342415 1342678 R hypothetical protein complement(1342415..1342678) Campylobacter jejuni RM1221 3231939 YP_179420.1 CDS CJE1434 NC_003912.7 1342735 1343022 R identified by similarity to GB:AAL82351.1; hypothetical protein complement(1342735..1343022) Campylobacter jejuni RM1221 3231940 YP_179421.1 CDS CJE1435 NC_003912.7 1343075 1343806 R identified by similarity to GP:13517589; match to protein family HMM PF03374; DNA-binding protein Roi complement(1343075..1343806) Campylobacter jejuni RM1221 3231941 YP_179422.1 CDS CJE1436 NC_003912.7 1344237 1344521 R hypothetical protein complement(1344237..1344521) Campylobacter jejuni RM1221 3231942 YP_179423.1 CDS CJE1437 NC_003912.7 1344501 1344734 D hypothetical protein 1344501..1344734 Campylobacter jejuni RM1221 3231944 YP_179424.1 CDS CJE1438 NC_003912.7 1344518 1344721 R hypothetical protein complement(1344518..1344721) Campylobacter jejuni RM1221 3231943 YP_179425.1 CDS CJE1439 NC_003912.7 1344926 1345579 D hypothetical protein 1344926..1345579 Campylobacter jejuni RM1221 3231945 YP_179426.1 CDS CJE1440 NC_003912.7 1345814 1346476 D identified by similarity to SP:P41027; match to protein family HMM PF00717; signal peptidase I 1345814..1346476 Campylobacter jejuni RM1221 3231946 YP_179427.1 CDS CJE1441 NC_003912.7 1346482 1347135 D identified by similarity to GP:27359896; match to protein family HMM PF01223; DNA/RNA non-specific endonuclease 1346482..1347135 Campylobacter jejuni RM1221 3232511 YP_179428.1 CDS CJE1442 NC_003912.7 1347152 1347433 D identified by similarity to OMNI:NT01MC0181; hypothetical protein 1347152..1347433 Campylobacter jejuni RM1221 3232512 YP_179429.1 CDS CJE1443 NC_003912.7 1347447 1347644 R hypothetical protein complement(1347447..1347644) Campylobacter jejuni RM1221 3232513 YP_179430.1 CDS CJE1444 NC_003912.7 1347562 1347981 R hypothetical protein complement(1347562..1347981) Campylobacter jejuni RM1221 3232514 YP_179431.1 CDS CJE1445 NC_003912.7 1348210 1348671 R hypothetical protein complement(1348210..1348671) Campylobacter jejuni RM1221 3232079 YP_179432.1 CDS CJE1446 NC_003912.7 1348671 1348778 R hypothetical protein complement(1348671..1348778) Campylobacter jejuni RM1221 3232515 YP_179433.1 CDS CJE1447 NC_003912.7 1348720 1350003 R hypothetical protein complement(1348720..1350003) Campylobacter jejuni RM1221 3232080 YP_179434.1 CDS CJE1448 NC_003912.7 1350000 1350374 R identified by similarity to OMNI:NTL03ST1666; hypothetical protein complement(1350000..1350374) Campylobacter jejuni RM1221 3232081 YP_179435.1 CDS CJE1449 NC_003912.7 1350367 1350750 R hypothetical protein complement(1350367..1350750) Campylobacter jejuni RM1221 3232082 YP_179436.1 CDS CJE1450 NC_003912.7 1350747 1351382 R hypothetical protein complement(1350747..1351382) Campylobacter jejuni RM1221 3232083 YP_179437.1 CDS CJE1451 NC_003912.7 1351395 1351745 R hypothetical protein complement(1351395..1351745) Campylobacter jejuni RM1221 3232084 YP_179438.1 CDS CJE1452 NC_003912.7 1351846 1353411 R hypothetical protein complement(1351846..1353411) Campylobacter jejuni RM1221 3232085 YP_179439.1 CDS CJE1453 NC_003912.7 1353404 1354036 R hypothetical protein complement(1353404..1354036) Campylobacter jejuni RM1221 3232086 YP_179440.1 CDS CJE1454 NC_003912.7 1354033 1354350 R phage head-tail adaptor complement(1354033..1354350) Campylobacter jejuni RM1221 3232087 YP_179441.1 CDS CJE1455 NC_003912.7 1354363 1354677 R hypothetical protein complement(1354363..1354677) Campylobacter jejuni RM1221 3232088 YP_179442.1 CDS CJE1456 NC_003912.7 1354760 1355032 D hypothetical protein 1354760..1355032 Campylobacter jejuni RM1221 3232089 YP_179443.1 CDS CJE1457 NC_003912.7 1354797 1355048 R hypothetical protein complement(1354797..1355048) Campylobacter jejuni RM1221 3232090 YP_179444.1 CDS CJE1458 NC_003912.7 1355059 1356225 R identified by match to protein family HMM TIGR01554; HK97 family major capsid protein complement(1355059..1356225) Campylobacter jejuni RM1221 3232091 YP_179445.1 CDS CJE1459 NC_003912.7 1356242 1356799 R hypothetical protein complement(1356242..1356799) Campylobacter jejuni RM1221 3232092 YP_179446.1 CDS CJE1460 NC_003912.7 1356885 1357754 R hypothetical protein complement(1356885..1357754) Campylobacter jejuni RM1221 3232093 YP_179447.1 CDS CJE1461 NC_003912.7 1357767 1363466 R hypothetical protein complement(1357767..1363466) Campylobacter jejuni RM1221 3232094 YP_179448.1 CDS CJE1462 NC_003912.7 1363478 1363609 R hypothetical protein complement(1363478..1363609) Campylobacter jejuni RM1221 3232095 YP_179449.1 CDS CJE1463 NC_003912.7 1363592 1363864 D hypothetical protein 1363592..1363864 Campylobacter jejuni RM1221 3232096 YP_179450.1 CDS CJE1464 NC_003912.7 1363856 1364071 R hypothetical protein complement(1363856..1364071) Campylobacter jejuni RM1221 3232097 YP_179451.1 CDS CJE1465 NC_003912.7 1364152 1364508 R hypothetical protein complement(1364152..1364508) Campylobacter jejuni RM1221 3232098 YP_179452.1 CDS CJE1466 NC_003912.7 1364505 1365485 R hypothetical protein complement(1364505..1365485) Campylobacter jejuni RM1221 3232099 YP_179453.1 CDS CJE1467 NC_003912.7 1365657 1366007 R hypothetical protein complement(1365657..1366007) Campylobacter jejuni RM1221 3232100 YP_179454.1 CDS CJE1468 NC_003912.7 1366008 1366550 R identified by match to protein family HMM TIGR01725; HK97 family phage protein complement(1366008..1366550) Campylobacter jejuni RM1221 3232516 YP_179455.1 CDS CJE1469 NC_003912.7 1366547 1367719 R identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; HK97 family portal protein complement(1366547..1367719) Campylobacter jejuni RM1221 3232101 YP_179456.1 CDS CJE1470 NC_003912.7 1367879 1368313 R identified by similarity to OMNI:NTL02LI2843; toxin-antitoxin protein complement(1367879..1368313) Campylobacter jejuni RM1221 3232102 YP_179457.1 CDS CJE1471 NC_003912.7 1368368 1369993 R identified by similarity to OMNI:NTL01SF1096; match to protein family HMM PF03354; phage terminase, large subunit complement(1368368..1369993) Campylobacter jejuni RM1221 3232103 YP_179458.1 CDS CJE1472 NC_003912.7 1369997 1370632 R phage terminase, small subunit complement(1369997..1370632) Campylobacter jejuni RM1221 3232104 YP_179459.1 CDS CJE1473 NC_003912.7 1370883 1371233 R identified by match to protein family HMM PF01844; HNH endonuclease complement(1370883..1371233) Campylobacter jejuni RM1221 3232105 YP_179460.1 CDS CJE1474 NC_003912.7 1371220 1371510 R hypothetical protein complement(1371220..1371510) Campylobacter jejuni RM1221 3232106 YP_179461.1 CDS CJE1475 NC_003912.7 1372261 1373604 D identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; TrkH family potassium uptake protein 1372261..1373604 Campylobacter jejuni RM1221 3232107 YP_179462.1 CDS CJE1476 NC_003912.7 1373615 1374265 D identified by similarity to GP:3288678; match to protein family HMM PF02254; potassium uptake protein TrkA 1373615..1374265 Campylobacter jejuni RM1221 3232108 YP_179463.1 CDS CJE1477 NC_003912.7 1374262 1374933 R identified by similarity to OMNI:NTL01HP00708; match to protein family HMM PF02621; hypothetical protein complement(1374262..1374933) Campylobacter jejuni RM1221 3232109 YP_179464.1 CDS upp NC_003912.7 1374939 1375565 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(1374939..1375565) Campylobacter jejuni RM1221 3232110 YP_179465.1 CDS CJE1479 NC_003912.7 1375562 1376797 R identified by similarity to SP:P76558; match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme, truncation complement(1375562..1376797) Campylobacter jejuni RM1221 3232111 YP_179466.1 CDS gltX NC_003912.7 1376799 1378190 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(1376799..1378190) Campylobacter jejuni RM1221 3232112 YP_179467.1 CDS CJE1481 NC_003912.7 1378255 1379070 D identified by similarity to GB:AAP77293.1; hypothetical protein 1378255..1379070 Campylobacter jejuni RM1221 3232113 YP_179468.1 CDS accC-2 NC_003912.7 1379107 1380438 R biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase complement(1379107..1380438) Campylobacter jejuni RM1221 3232114 YP_179469.1 CDS accB NC_003912.7 1380440 1380895 R identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase complement(1380440..1380895) Campylobacter jejuni RM1221 3232115 YP_179470.1 CDS dcd NC_003912.7 1381043 1381603 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1381043..1381603 Campylobacter jejuni RM1221 3232116 YP_179471.1 CDS flmA NC_003912.7 1381652 1382656 D identified by similarity to OMNI:NTL01CJ01235; match to protein family HMM PF02719; polysaccharide biosynthesis protein 1381652..1382656 Campylobacter jejuni RM1221 3232117 YP_179472.1 CDS CJE1486 NC_003912.7 1382658 1383788 D identified by match to protein family HMM PF01041; aminotransferase 1382658..1383788 Campylobacter jejuni RM1221 3232118 YP_179473.1 CDS CJE1487 NC_003912.7 1383781 1385097 D identified by similarity to PIR:E97170; hypothetical protein 1383781..1385097 Campylobacter jejuni RM1221 3232119 YP_179474.1 CDS CJE1488 NC_003912.7 1385094 1385879 D hypothetical protein 1385094..1385879 Campylobacter jejuni RM1221 3232120 YP_179475.1 CDS CJE1489 NC_003912.7 1385879 1386100 D identified by similarity to PIR:F97876; ACP 1385879..1386100 Campylobacter jejuni RM1221 3232121 YP_179476.1 CDS CJE1490 NC_003912.7 1386094 1387002 D identified by similarity to OMNI:NTL03PA02036; hypothetical protein 1386094..1387002 Campylobacter jejuni RM1221 3232122 YP_179477.1 CDS CJE1491 NC_003912.7 1387002 1388564 D identified by match to protein family HMM TIGR01681; match to protein family HMM TIGR01686; HAD family phosphatase 1387002..1388564 Campylobacter jejuni RM1221 3232123 YP_179478.1 CDS CJE1492 NC_003912.7 1388554 1389615 D FabH; beta-ketoacyl-ACP synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-ACP synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; paralogs which do not contain the N-X-R ACP-binding site motif; 3-oxoacyl-ACP synthase III 1388554..1389615 Campylobacter jejuni RM1221 3232124 YP_179479.1 CDS CJE1493 NC_003912.7 1389615 1389836 D identified by similarity to OMNI:NTL01XA1935; ACP 1389615..1389836 Campylobacter jejuni RM1221 3232125 YP_179480.1 CDS CJE1494 NC_003912.7 1389850 1390440 R hypothetical protein complement(1389850..1390440) Campylobacter jejuni RM1221 3232126 YP_179481.1 CDS CJE1495 NC_003912.7 1390461 1390865 R hypothetical protein complement(1390461..1390865) Campylobacter jejuni RM1221 3232127 YP_179482.1 CDS CJE1496 NC_003912.7 1391138 1392646 D identified by match to protein family HMM PF00501; amino acid adenylation domain-containing protein 1391138..1392646 Campylobacter jejuni RM1221 3232128 YP_179483.1 CDS CJE1497 NC_003912.7 1392639 1393364 D identified by match to protein family HMM PF00583; acetyltransferase 1392639..1393364 Campylobacter jejuni RM1221 3232129 YP_179484.1 CDS CJE1498 NC_003912.7 1393364 1394083 D identified by match to protein family HMM PF00551; formyl transferase 1393364..1394083 Campylobacter jejuni RM1221 3232130 YP_179485.1 CDS CJE1499 NC_003912.7 1394085 1394309 D identified by similarity to GB:AAB41298.1; ACP 1394085..1394309 Campylobacter jejuni RM1221 3232131 YP_179486.1 CDS CJE1500 NC_003912.7 1394318 1395232 D identified by similarity to OMNI:NTL01CA0429; match to protein family HMM PF01522; polysaccharide deacetylase 1394318..1395232 Campylobacter jejuni RM1221 3232132 YP_179487.1 CDS CJE1501 NC_003912.7 1395229 1396227 D identified by similarity to OMNI:NT01MC2981; hypothetical protein 1395229..1396227 Campylobacter jejuni RM1221 3232133 YP_179488.1 CDS CJE1502 NC_003912.7 1396224 1396556 D identified by similarity to SP:P29810; aminoglycoside N3-acetyltransferase 1396224..1396556 Campylobacter jejuni RM1221 3232134 YP_179489.1 CDS CJE1503 NC_003912.7 1396855 1397013 D hypothetical protein 1396855..1397013 Campylobacter jejuni RM1221 3232135 YP_179490.1 CDS CJE1504 NC_003912.7 1397010 1398221 R identified by similarity to PIR:C81274; hypothetical protein complement(1397010..1398221) Campylobacter jejuni RM1221 3232136 YP_179491.1 CDS neuA NC_003912.7 1398312 1399010 D identified by similarity to OMNI:NTL01CJ01253; match to protein family HMM PF02348; acylneuraminate cytidylyltransferase 1398312..1399010 Campylobacter jejuni RM1221 3232137 YP_179492.1 CDS CJE1507 NC_003912.7 1398994 1399818 D identified by similarity to GP:5616173; flagellar protein 1398994..1399818 Campylobacter jejuni RM1221 3232138 YP_179493.1 CDS CJE1508 NC_003912.7 1399815 1400288 D identified by match to protein family HMM PF00583; acetyltransferase 1399815..1400288 Campylobacter jejuni RM1221 3232139 YP_179494.1 CDS hisF-1 NC_003912.7 1400253 1400999 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamide and glutamine to imidazole-glycerolphosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(1400253..1400999) Campylobacter jejuni RM1221 3232140 YP_179495.1 CDS hisH NC_003912.7 1401000 1401605 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(1401000..1401605) Campylobacter jejuni RM1221 3232141 YP_179496.1 CDS CJE1511 NC_003912.7 1401602 1402738 R identified by similarity to GP:15559182; flagellin modification protein, PseA complement(1401602..1402738) Campylobacter jejuni RM1221 3232142 YP_179497.1 CDS neuB NC_003912.7 1402996 1404027 D identified by similarity to GB:AAM76272.1; match to protein family HMM PF01354; match to protein family HMM PF03102; N-acetylneuraminic acid synthetase 1402996..1404027 Campylobacter jejuni RM1221 3232143 YP_179498.1 CDS CJE1513 NC_003912.7 1404024 1404995 D identified by similarity to GP:20559811; match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 1404024..1404995 Campylobacter jejuni RM1221 3232144 YP_179499.1 CDS CJE1514 NC_003912.7 1404988 1406133 D identified by similarity to OMNI:NTL01CJ01262; match to protein family HMM PF01041; aminotransferase 1404988..1406133 Campylobacter jejuni RM1221 3232145 YP_179500.1 CDS CJE1515 NC_003912.7 1406353 1406724 D identified by similarity to SP:P77398; formyltransferase 1406353..1406724 Campylobacter jejuni RM1221 3232146 YP_179501.1 CDS ptmC NC_003912.7 1406883 1407887 D identified by similarity to OMNI:NTL01CJ01269; match to protein family HMM PF01354; match to protein family HMM PF03102; N-acetylneuraminic acid synthetase 1406883..1407887 Campylobacter jejuni RM1221 3232147 YP_179502.1 CDS neuC NC_003912.7 1407868 1409034 D identified by similarity to GP:11095582; match to protein family HMM PF02350; UDP-N-acetylglucosamine 2-epimerase 1407868..1409034 Campylobacter jejuni RM1221 3232148 YP_179503.1 CDS CJE1518 NC_003912.7 1409043 1410068 D identified by similarity to OMNI:NTL01CJ01270; match to protein family HMM PF00483; match to protein family HMM PF00571; nucleotidyltransferase 1409043..1410068 Campylobacter jejuni RM1221 3232149 YP_179504.1 CDS CJE1519 NC_003912.7 1410065 1410970 D identified by similarity to GP:27354272; hypothetical protein 1410065..1410970 Campylobacter jejuni RM1221 3232150 YP_179505.1 CDS ptmB NC_003912.7 1410963 1411670 D identified by similarity to SP:Q45982; match to protein family HMM PF02348; posttranslational flagellin modification protein B 1410963..1411670 Campylobacter jejuni RM1221 3232151 YP_179506.1 CDS ptmA NC_003912.7 1411670 1412440 D identified by similarity to SP:Q45983; match to protein family HMM PF00106; flagellin modification protein A 1411670..1412440 Campylobacter jejuni RM1221 3232152 YP_179507.1 CDS maf-1 NC_003912.7 1412428 1414389 D identified by similarity to PIR:B81277; match to protein family HMM PF01973; motility accessory factor 1412428..1414389 Campylobacter jejuni RM1221 3232153 YP_179508.1 CDS maf-2 NC_003912.7 1414365 1416245 D identified by similarity to PIR:C81277; match to protein family HMM PF01973; motility accessory factor 1414365..1416245 Campylobacter jejuni RM1221 3232154 YP_179509.1 CDS maf-3 NC_003912.7 1416258 1418174 D identified by similarity to PIR:C81275; match to protein family HMM PF01973; motility accessory factor 1416258..1418174 Campylobacter jejuni RM1221 3232155 YP_179510.1 CDS maf-4 NC_003912.7 1418150 1420057 D identified by similarity to PIR:F81277; match to protein family HMM PF01973; motility accessory factor 1418150..1420057 Campylobacter jejuni RM1221 3232156 YP_179511.1 CDS flaB NC_003912.7 1420088 1421809 R FlaB; structural flagella protein; in Helicobacter the flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin complement(1420088..1421809) Campylobacter jejuni RM1221 3232517 YP_179512.1 CDS CJE1527 NC_003912.7 1421811 1421912 R hypothetical protein complement(1421811..1421912) Campylobacter jejuni RM1221 3232503 YP_179513.1 CDS flaA NC_003912.7 1421954 1423675 R FlaA; structural flagella protein; in Helicobacter the flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin complement(1421954..1423675) Campylobacter jejuni RM1221 3232502 YP_179514.1 CDS maf-5 NC_003912.7 1423772 1425589 R identified by similarity to PIR:A81278; match to protein family HMM PF01973; motility accessory factor complement(1423772..1425589) Campylobacter jejuni RM1221 3232157 YP_179515.1 CDS maf-6 NC_003912.7 1425586 1427409 R identified by similarity to PIR:B81278; match to protein family HMM PF01973; motility accessory factor complement(1425586..1427409) Campylobacter jejuni RM1221 3232158 YP_179516.1 CDS CJE1531 NC_003912.7 1427419 1428660 R hypothetical protein complement(1427419..1428660) Campylobacter jejuni RM1221 3232159 YP_179517.1 CDS ctsG NC_003912.7 1428660 1429175 R identified by similarity to PIR:D81278; transformation system protein complement(1428660..1429175) Campylobacter jejuni RM1221 3232160 YP_179518.1 CDS gcp NC_003912.7 1429176 1430183 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(1429176..1430183) Campylobacter jejuni RM1221 3232161 YP_179519.1 CDS CJE1534 NC_003912.7 1430180 1431574 R identified by similarity to OMNI:NTL01HP00347; hypothetical protein complement(1430180..1431574) Campylobacter jejuni RM1221 3232162 YP_179520.1 CDS dxr NC_003912.7 1431576 1432646 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(1431576..1432646) Campylobacter jejuni RM1221 3232163 YP_179521.1 CDS cdsA NC_003912.7 1432643 1433368 R identified by similarity to OMNI:VC2255; match to protein family HMM PF01148; phosphatidate cytidylyltransferase complement(1432643..1433368) Campylobacter jejuni RM1221 3232164 YP_179522.1 CDS CJE1537 NC_003912.7 1433377 1433715 R hypothetical protein complement(1433377..1433715) Campylobacter jejuni RM1221 3232165 YP_179523.1 CDS CJE1538 NC_003912.7 1433717 1435024 R identified by similarity to GP:19110786; match to protein family HMM PF05670; fibronectin/fibrinogen binding protein complement(1433717..1435024) Campylobacter jejuni RM1221 3232166 YP_179524.1 CDS CJE1539 NC_003912.7 1435086 1435661 D identified by similarity to SP:P32173; molybdopterin-guanine dinucleotide biosynthesis protein 1435086..1435661 Campylobacter jejuni RM1221 3232167 YP_179525.1 CDS pldA NC_003912.7 1435658 1436647 D identified by similarity to GP:2243138; match to protein family HMM PF02253; phospholipase A 1435658..1436647 Campylobacter jejuni RM1221 3232168 YP_179526.1 CDS ceuB NC_003912.7 1436733 1437701 D identified by similarity to GB:CAA61301.1; match to protein family HMM PF01032; enterochelin ABC transporter permease 1436733..1437701 Campylobacter jejuni RM1221 3232169 YP_179527.1 CDS ceuC NC_003912.7 1437694 1438632 D identified by similarity to GP:1107529; match to protein family HMM PF01032; enterochelin ABC transporter permease 1437694..1438632 Campylobacter jejuni RM1221 3232170 YP_179528.1 CDS ceuD NC_003912.7 1438629 1439384 D identified by similarity to GP:1107530; match to protein family HMM PF00005; enterochelin ABC transporter ATP-binding protein 1438629..1439384 Campylobacter jejuni RM1221 3232171 YP_179529.1 CDS CJE1545 NC_003912.7 1440614 1441168 R identified by similarity to GP:1107532; hypothetical protein complement(1440614..1441168) Campylobacter jejuni RM1221 3232173 YP_179530.1 CDS nrfA NC_003912.7 1441303 1443135 R identified by similarity to SP:Q9S1E5; match to protein family HMM PF02335; cytochrome C552 complement(1441303..1443135) Campylobacter jejuni RM1221 3232174 YP_179531.1 CDS nrfH NC_003912.7 1443150 1443665 R identified by similarity to SP:Q9S1E6; match to protein family HMM PF03264; cytochrome C-type protein nrfH complement(1443150..1443665) Campylobacter jejuni RM1221 3232175 YP_179532.1 CDS ppk NC_003912.7 1443853 1445937 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 1443853..1445937 Campylobacter jejuni RM1221 3232176 YP_179533.1 CDS CJE1550 NC_003912.7 1447310 1447705 R hypothetical protein complement(1447310..1447705) Campylobacter jejuni RM1221 3232178 YP_179534.1 CDS CJE1551 NC_003912.7 1447900 1448118 R hypothetical protein complement(1447900..1448118) Campylobacter jejuni RM1221 3232179 YP_179535.1 CDS CJE1552 NC_003912.7 1448158 1448358 R hypothetical protein complement(1448158..1448358) Campylobacter jejuni RM1221 3232180 YP_179536.1 CDS CJE1553 NC_003912.7 1448923 1449375 R identified by similarity to GP:28974216; hypothetical protein complement(1448923..1449375) Campylobacter jejuni RM1221 3232181 YP_179537.1 CDS ruvB NC_003912.7 1449424 1450431 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1449424..1450431 Campylobacter jejuni RM1221 3232182 YP_179538.1 CDS CJE1555 NC_003912.7 1450435 1451478 D identified by match to protein family HMM PF01594; hypothetical protein 1450435..1451478 Campylobacter jejuni RM1221 3232183 YP_179539.1 CDS fumC NC_003912.7 1451508 1452899 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1451508..1452899) Campylobacter jejuni RM1221 3232184 YP_179540.1 CDS CJE1557 NC_003912.7 1452955 1456080 R identified by match to protein family HMM PF00082; serine protease complement(1452955..1456080) Campylobacter jejuni RM1221 3232185 YP_179541.1 CDS glmS NC_003912.7 1456083 1457879 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(1456083..1457879) Campylobacter jejuni RM1221 3232186 YP_179542.1 CDS CJE1559 NC_003912.7 1457884 1460232 R GlnD family protein complement(1457884..1460232) Campylobacter jejuni RM1221 3232187 YP_179543.1 CDS CJE1560 NC_003912.7 1460376 1461440 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; hypothetical protein 1460376..1461440 Campylobacter jejuni RM1221 3232188 YP_179544.1 CDS CJE1561 NC_003912.7 1461450 1462769 D identified by match to protein family HMM PF00860; xanthine/uracil permease 1461450..1462769 Campylobacter jejuni RM1221 3232189 YP_179545.1 CDS CJE1562 NC_003912.7 1462783 1463226 D identified by similarity to PIR:G64611; match to protein family HMM PF00156; nucleotide phosphoribosyltransferase 1462783..1463226 Campylobacter jejuni RM1221 3232190 YP_179546.1 CDS CJE1563 NC_003912.7 1463271 1463969 D identified by match to protein family HMM PF04333; VacJ family lipoprotein 1463271..1463969 Campylobacter jejuni RM1221 3232191 YP_179547.1 CDS CJE1564 NC_003912.7 1463979 1464548 D identified by similarity to GP:4336801; match to protein family HMM PF05494; toluene tolerance protein 1463979..1464548 Campylobacter jejuni RM1221 3232192 YP_179548.1 CDS CJE1565 NC_003912.7 1464548 1467019 D identified by similarity to OMNI:BB0252; hypothetical protein 1464548..1467019 Campylobacter jejuni RM1221 3232193 YP_179549.1 CDS CJE1566 NC_003912.7 1467050 1467652 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(1467050..1467652) Campylobacter jejuni RM1221 3232194 YP_179550.1 CDS CJE1567 NC_003912.7 1467818 1469119 D identified by similarity to SP:P77726; match to protein family HMM PF00083; multidrug resistance efflux transporter 1467818..1469119 Campylobacter jejuni RM1221 3232195 YP_179551.1 CDS CJE1568 NC_003912.7 1469116 1470789 R identified by match to protein family HMM PF00037; iron-sulfur cluster-binding domain-containing protein complement(1469116..1470789) Campylobacter jejuni RM1221 3232196 YP_179552.1 CDS selA NC_003912.7 1470867 1472189 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 1470867..1472189 Campylobacter jejuni RM1221 3232197 YP_179553.1 CDS selB NC_003912.7 1472186 1473991 D identified by similarity to SP:P14081; match to protein family HMM PF00009; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific elongation factor 1472186..1473991 Campylobacter jejuni RM1221 3232198 YP_179554.1 CDS CJE1571 NC_003912.7 1474040 1474750 D identified by similarity to OMNI:NTL01AA01434; hypothetical protein 1474040..1474750 Campylobacter jejuni RM1221 3232199 YP_179555.1 CDS CJE1572 NC_003912.7 1474756 1475286 D lipoprotein 1474756..1475286 Campylobacter jejuni RM1221 3232200 YP_179556.1 CDS fldA NC_003912.7 1475331 1475822 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(1475331..1475822) Campylobacter jejuni RM1221 3232201 YP_179557.1 CDS CJE1574 NC_003912.7 1475822 1476517 R hypothetical protein complement(1475822..1476517) Campylobacter jejuni RM1221 3232202 YP_179558.1 CDS CJE1575 NC_003912.7 1476520 1476834 R identified by similarity to OMNI:NTL01BH0516; hypothetical protein complement(1476520..1476834) Campylobacter jejuni RM1221 3232203 YP_179559.1 CDS katA NC_003912.7 1477005 1478429 D identified by similarity to SP:Q59170; match to protein family HMM PF00199; catalase 1477005..1478429 Campylobacter jejuni RM1221 3232204 YP_179560.1 CDS CJE1577 NC_003912.7 1478486 1478956 D identified by match to protein family HMM PF00023; ankyrin 1478486..1478956 Campylobacter jejuni RM1221 3232205 YP_179561.1 CDS CJE1578 NC_003912.7 1478957 1479613 R identified by similarity to OMNI:SAG1820; hypothetical protein complement(1478957..1479613) Campylobacter jejuni RM1221 3232206 YP_179562.1 CDS CJE1579 NC_003912.7 1479781 1480143 D identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 1479781..1480143 Campylobacter jejuni RM1221 3232207 YP_179563.1 CDS metC NC_003912.7 1481600 1482763 D identified by similarity to SP:P06721; match to protein family HMM PF01053; cystathionine beta-lyase 1481600..1482763 Campylobacter jejuni RM1221 3232209 YP_179564.1 CDS purB-2 NC_003912.7 1482773 1484140 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1482773..1484140 Campylobacter jejuni RM1221 3232210 YP_179565.1 CDS CJE1583 NC_003912.7 1484149 1485489 D identified by match to protein family HMM PF03972; MmgE/PrpD family protein 1484149..1485489 Campylobacter jejuni RM1221 3232211 YP_179566.1 CDS CJE1584 NC_003912.7 1485571 1485795 D identified by match to protein family HMM PF04023; feoA family protein 1485571..1485795 Campylobacter jejuni RM1221 3232212 YP_179567.1 CDS CJE1586 NC_003912.7 1487629 1489122 R identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391; hydrogenase, (NiFe)/(NiFeSe) small subunit family complement(1487629..1489122) Campylobacter jejuni RM1221 3232214 YP_179568.1 CDS fabI NC_003912.7 1489126 1489950 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase complement(1489126..1489950) Campylobacter jejuni RM1221 3232215 YP_179569.1 CDS tpiA NC_003912.7 1489954 1490625 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(1489954..1490625) Campylobacter jejuni RM1221 3232216 YP_179570.1 CDS pgk NC_003912.7 1490622 1491824 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(1490622..1491824) Campylobacter jejuni RM1221 3232217 YP_179571.1 CDS gapA NC_003912.7 1491827 1492825 R identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase A complement(1491827..1492825) Campylobacter jejuni RM1221 3232218 YP_179572.1 CDS nadD NC_003912.7 1492885 1493430 D identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase 1492885..1493430 Campylobacter jejuni RM1221 3232219 YP_179573.1 CDS CJE1592 NC_003912.7 1493458 1493784 D identified by similarity to OMNI:HP1414; match to protein family HMM PF02410; match to protein family HMM TIGR00090; hypothetical protein 1493458..1493784 Campylobacter jejuni RM1221 3232220 YP_179574.1 CDS CJE1593 NC_003912.7 1493815 1494192 R identified by similarity to OMNI:NTL02YP3559; match to protein family HMM PF06476; hypothetical protein complement(1493815..1494192) Campylobacter jejuni RM1221 3232221 YP_179575.1 CDS algC NC_003912.7 1494240 1495610 R identified by similarity to SP:P26276; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase/phosphoglucomutase complement(1494240..1495610) Campylobacter jejuni RM1221 3232222 YP_179576.1 CDS fliL NC_003912.7 1495732 1496268 D interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1495732..1496268 Campylobacter jejuni RM1221 3232223 YP_179577.1 CDS acpS NC_003912.7 1496268 1496615 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1496268..1496615 Campylobacter jejuni RM1221 3232224 YP_179578.1 CDS CJE1597 NC_003912.7 1496616 1497035 R hypothetical protein complement(1496616..1497035) Campylobacter jejuni RM1221 3232225 YP_179579.1 CDS CJE1598 NC_003912.7 1497032 1498393 R identified by match to protein family HMM PF00067; cytochrome P450 family protein complement(1497032..1498393) Campylobacter jejuni RM1221 3232226 YP_179580.1 CDS CJE1599 NC_003912.7 1498390 1499511 R hypothetical protein complement(1498390..1499511) Campylobacter jejuni RM1221 3232227 YP_179581.1 CDS kpsS NC_003912.7 1499584 1500768 R identified by similarity to GP:26109934; match to protein family HMM PF05159; capsule polysaccharide export protein KpsS complement(1499584..1500768) Campylobacter jejuni RM1221 3232228 YP_179582.1 CDS kpsC NC_003912.7 1500765 1502837 R identified by similarity to SP:Q05013; match to protein family HMM PF05159; capsule polysaccharide export protein KpsC complement(1500765..1502837) Campylobacter jejuni RM1221 3232229 YP_179583.1 CDS CJE1602 NC_003912.7 1502815 1504734 R identified by similarity to GP:29469161; capsular polysaccharide biosynthesis protein complement(1502815..1504734) Campylobacter jejuni RM1221 3232230 YP_179584.1 CDS CJE1603 NC_003912.7 1504703 1506655 R identified by similarity to GP:6469930; capsular polysaccharide biosynthesis protein complement(1504703..1506655) Campylobacter jejuni RM1221 3232231 YP_179585.1 CDS CJE1604 NC_003912.7 1506655 1508136 R identified by similarity to OMNI:MJ1101; capsular polysaccharide biosynthesis protein complement(1506655..1508136) Campylobacter jejuni RM1221 3232232 YP_179586.1 CDS CJE1605 NC_003912.7 1508138 1508863 R identified by similarity to OMNI:NTL01PA0174; capsular polysaccharide biosynthesis protein complement(1508138..1508863) Campylobacter jejuni RM1221 3232233 YP_179587.1 CDS CJE1606 NC_003912.7 1508850 1510151 R identified by match to protein family HMM PF00485; match to protein family HMM PF00702; haloacid dehalogenase-like hydrolase complement(1508850..1510151) Campylobacter jejuni RM1221 3232234 YP_179588.1 CDS CJE1607 NC_003912.7 1510144 1510737 R hypothetical protein complement(1510144..1510737) Campylobacter jejuni RM1221 3232235 YP_179589.1 CDS CJE1608 NC_003912.7 1510712 1511392 R identified by similarity to GB:AAK27852.1; match to protein family HMM PF00483; capsular biosynthesis nucleotidyltransferase complement(1510712..1511392) Campylobacter jejuni RM1221 3232236 YP_179590.1 CDS gmhA-2 NC_003912.7 1511380 1511985 R identified by similarity to SP:Q9AGY7; match to protein family HMM PF01380; match to protein family HMM TIGR00441; phosphoheptose isomerase complement(1511380..1511985) Campylobacter jejuni RM1221 3232237 YP_179591.1 CDS CJE1610 NC_003912.7 1511973 1512992 R identified by match to protein family HMM PF00288; capsular biosynthesis sugar kinase complement(1511973..1512992) Campylobacter jejuni RM1221 3232238 YP_179592.1 CDS wcbK NC_003912.7 1512989 1514020 R identified by similarity to SP:P32054; match to protein family HMM PF01370; GDP-mannose 4,6-dehydratase complement(1512989..1514020) Campylobacter jejuni RM1221 3232239 YP_179593.1 CDS fcl NC_003912.7 1514017 1515066 R identified by similarity to SP:P32055; GDP-L-fucose synthetase complement(1514017..1515066) Campylobacter jejuni RM1221 3232240 YP_179594.1 CDS CJE1613 NC_003912.7 1515078 1516688 R identified by similarity to GP:27314628; capsular polysaccharide biosynthesis protein complement(1515078..1516688) Campylobacter jejuni RM1221 3232241 YP_179595.1 CDS CJE1614 NC_003912.7 1516685 1518121 R hypothetical protein complement(1516685..1518121) Campylobacter jejuni RM1221 3232242 YP_179596.1 CDS CJE1615 NC_003912.7 1518157 1519500 R identified by similarity to GP:13446686; match to protein family HMM PF00534; capsular polysaccharide biosynthesis glycosyltransferase WcbB complement(1518157..1519500) Campylobacter jejuni RM1221 3232243 YP_179597.1 CDS CJE1616 NC_003912.7 1519503 1521104 R identified by similarity to SP:P46918; match to protein family HMM PF04464; capsular polysaccharide biosynthesis protein complement(1519503..1521104) Campylobacter jejuni RM1221 3232244 YP_179598.1 CDS kpsF NC_003912.7 1521101 1522048 R identified by similarity to EGAD:20643; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; arabinose-5-phosphate isomerase complement(1521101..1522048) Campylobacter jejuni RM1221 3232245 YP_179599.1 CDS kpsD NC_003912.7 1522058 1523716 R identified by similarity to SP:Q03961; match to protein family HMM PF02563; capsular polysaccharide ABC transporter periplasmic polysaccharide-binding protein complement(1522058..1523716) Campylobacter jejuni RM1221 3232246 YP_179600.1 CDS kpsE NC_003912.7 1523718 1524836 R identified by similarity to SP:P42214; match to protein family HMM PF02706; capsular polysaccharide ABC transporter complement(1523718..1524836) Campylobacter jejuni RM1221 3232247 YP_179601.1 CDS kpsT NC_003912.7 1524836 1525498 R identified by similarity to SP:P24586; match to protein family HMM PF00005; capsular polysaccharide ABC transporter ATP-binding protein complement(1524836..1525498) Campylobacter jejuni RM1221 3232248 YP_179602.1 CDS kpsM NC_003912.7 1525495 1526277 R identified by similarity to SP:P23889; match to protein family HMM PF01061; capsular polysaccharide ABC transporter permease complement(1525495..1526277) Campylobacter jejuni RM1221 3232249 YP_179603.1 CDS CJE1622 NC_003912.7 1526349 1526756 R identified by similarity to GP:26110162; hypothetical protein complement(1526349..1526756) Campylobacter jejuni RM1221 3232250 YP_179604.1 CDS CJE1623 NC_003912.7 1526831 1527394 D hypothetical protein 1526831..1527394 Campylobacter jejuni RM1221 3232251 YP_179605.1 CDS CJE1624 NC_003912.7 1527430 1528119 D deoxyuridine triphosphatase 1527430..1528119 Campylobacter jejuni RM1221 3232252 YP_179606.1 CDS CJE1625 NC_003912.7 1528121 1528834 D identified by match to protein family HMM PF04401; hypothetical protein 1528121..1528834 Campylobacter jejuni RM1221 3232253 YP_179607.1 CDS CJE1626 NC_003912.7 1528817 1529782 R identified by match to protein family HMM PF01171; PP-loop family protein complement(1528817..1529782) Campylobacter jejuni RM1221 3232254 YP_179608.1 CDS yliG NC_003912.7 1529772 1531091 R identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; tRNA modifying protein complement(1529772..1531091) Campylobacter jejuni RM1221 3232255 YP_179609.1 CDS prfB NC_003912.7 1531165 1532262 D recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 1531165..1532262 Campylobacter jejuni RM1221 3232256 YP_179610.1 CDS CJE1629 NC_003912.7 1532420 1532599 R identified by similarity to SP:Q8ENT9; hypothetical protein complement(1532420..1532599) Campylobacter jejuni RM1221 3232257 YP_179611.1 CDS CJE1630 NC_003912.7 1532637 1532771 D hypothetical protein 1532637..1532771 Campylobacter jejuni RM1221 3232258 YP_179612.1 CDS truD NC_003912.7 1532855 1533973 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(1532855..1533973) Campylobacter jejuni RM1221 3232259 YP_179613.1 CDS CJE1632 NC_003912.7 1533942 1534763 R catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase complement(1533942..1534763) Campylobacter jejuni RM1221 3232260 YP_179614.1 CDS CJE1633 NC_003912.7 1534850 1535923 D identified by similarity to OMNI:HP0468; hypothetical protein 1534850..1535923 Campylobacter jejuni RM1221 3232261 YP_179615.1 CDS CJE1634 NC_003912.7 1535920 1536303 D identified by similarity to OMNI:HP0811; hypothetical protein 1535920..1536303 Campylobacter jejuni RM1221 3232262 YP_179616.1 CDS CJE1635 NC_003912.7 1536293 1536979 D identified by similarity to OMNI:NTL01CJ01398; match to protein family HMM PF03602; match to protein family HMM TIGR00095; site-specific DNA methyltransferase 1536293..1536979 Campylobacter jejuni RM1221 3232263 YP_179617.1 CDS flgI NC_003912.7 1537038 1538084 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1537038..1538084 Campylobacter jejuni RM1221 3232264 YP_179618.1 CDS CJE1637 NC_003912.7 1538084 1538425 D identified by similarity to SP:O25027; hypothetical protein 1538084..1538425 Campylobacter jejuni RM1221 3232265 YP_179619.1 CDS CJE1638 NC_003912.7 1538488 1538685 D identified by similarity to GP:2935678; hypothetical protein 1538488..1538685 Campylobacter jejuni RM1221 3232266 YP_179620.1 CDS CJE1639 NC_003912.7 1538728 1539162 D identified by similarity to OMNI:HP1120; hypothetical protein 1538728..1539162 Campylobacter jejuni RM1221 3232267 YP_179621.1 CDS flgK NC_003912.7 1539172 1540998 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1539172..1540998 Campylobacter jejuni RM1221 3232268 YP_179622.1 CDS CJE1641 NC_003912.7 1541015 1541779 D identified by similarity to OMNI:NTL02LI0846; hypothetical protein 1541015..1541779 Campylobacter jejuni RM1221 3232269 YP_179623.1 CDS CJE1642 NC_003912.7 1541783 1542547 D identified by similarity to OMNI:NTL01PM0363; match to protein family HMM PF01925; hypothetical protein 1541783..1542547 Campylobacter jejuni RM1221 3232270 YP_179624.1 CDS ctsF NC_003912.7 1542540 1543721 R identified by similarity to GB:AAP87276.1; match to protein family HMM PF00482; general secretory pathway protein F complement(1542540..1543721) Campylobacter jejuni RM1221 3232271 YP_179625.1 CDS ctsE NC_003912.7 1543718 1545277 R identified by similarity to GP:4139237; match to protein family HMM PF00437; general secretory pathway protein E complement(1543718..1545277) Campylobacter jejuni RM1221 3232272 YP_179626.1 CDS ctsX NC_003912.7 1545267 1545854 R identified by similarity to PIR:E81293; transformation system protein complement(1545267..1545854) Campylobacter jejuni RM1221 3232273 YP_179627.1 CDS ctsP NC_003912.7 1545858 1546466 R identified by similarity to GB:BAC43933.1; transformation system protein complement(1545858..1546466) Campylobacter jejuni RM1221 3232274 YP_179628.1 CDS ctsD NC_003912.7 1546459 1547871 R identified by similarity to SP:P31780; match to protein family HMM PF00263; general secretory pathway protein D complement(1546459..1547871) Campylobacter jejuni RM1221 3232275 YP_179629.1 CDS ctsR NC_003912.7 1547849 1548160 R identified by similarity to GP:27361210; transformation system protein complement(1547849..1548160) Campylobacter jejuni RM1221 3232276 YP_179630.1 CDS CJE1649 NC_003912.7 1548184 1551744 R identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; pyruvate ferredoxin/flavodoxin oxidoreductase complement(1548184..1551744) Campylobacter jejuni RM1221 3232277 YP_179631.1 CDS CJE1650 NC_003912.7 1551837 1552478 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD-superfamily hydrolase, subfamily IA, variant 1 family protein complement(1551837..1552478) Campylobacter jejuni RM1221 3232278 YP_179632.1 CDS cadF NC_003912.7 1552478 1553437 R identified by similarity to GP:2062640; match to protein family HMM PF00691; match to protein family HMM PF01389; fibronectin-binding protein complement(1552478..1553437) Campylobacter jejuni RM1221 3232279 YP_179633.1 CDS rpsI NC_003912.7 1553562 1553951 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(1553562..1553951) Campylobacter jejuni RM1221 3232280 YP_179634.1 CDS rplM NC_003912.7 1553954 1554379 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1553954..1554379) Campylobacter jejuni RM1221 3232281 YP_179635.1 CDS CJE1654 NC_003912.7 1554463 1557228 R identified by similarity to PIR:A71805; match to protein family HMM PF00580; recombination protein RecB complement(1554463..1557228) Campylobacter jejuni RM1221 3232282 YP_179636.1 CDS CJE1655 NC_003912.7 1557225 1559591 R identified by similarity to OMNI:HP1089; hypothetical protein complement(1557225..1559591) Campylobacter jejuni RM1221 3232283 YP_179637.1 CDS CJE1656 NC_003912.7 1559588 1560109 R identified by similarity to GP:23497165; lipoprotein complement(1559588..1560109) Campylobacter jejuni RM1221 3232284 YP_179638.1 CDS CJE1657 NC_003912.7 1560096 1560698 R hypothetical protein complement(1560096..1560698) Campylobacter jejuni RM1221 3232285 YP_179639.1 CDS CJE1658 NC_003912.7 1560695 1560796 R hypothetical protein complement(1560695..1560796) Campylobacter jejuni RM1221 3232286 YP_179640.1 CDS CJE1659 NC_003912.7 1560793 1561011 R hypothetical protein complement(1560793..1561011) Campylobacter jejuni RM1221 3232287 YP_179641.1 CDS ccoP NC_003912.7 1561011 1561874 R identified by match to protein family HMM PF00034; match to protein family HMM TIGR00782; cytochrome C oxidase, cbb3-type, subunit III complement(1561011..1561874) Campylobacter jejuni RM1221 3232288 YP_179642.1 CDS ccoQ NC_003912.7 1561874 1562140 R cytochrome C oxidase, cbb3-type, subunit IV complement(1561874..1562140) Campylobacter jejuni RM1221 3232289 YP_179643.1 CDS ccoO NC_003912.7 1562142 1562807 R CcoO; FixO; cbb3-type cytochrome C oxidase subunit II complement(1562142..1562807) Campylobacter jejuni RM1221 3232290 YP_179644.1 CDS ccoN NC_003912.7 1562820 1564286 R CcoN; FixN; cbb3-type cytochrome C oxidase subunit I complement(1562820..1564286) Campylobacter jejuni RM1221 3232291 YP_179645.1 CDS CJE1664 NC_003912.7 1564412 1565092 R identified by similarity to GP:29894058; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(1564412..1565092) Campylobacter jejuni RM1221 3232292 YP_179646.1 CDS CJE1665 NC_003912.7 1565095 1566306 R identified by similarity to OMNI:NT01MC4072; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box sensor histidine kinase complement(1565095..1566306) Campylobacter jejuni RM1221 3232293 YP_179647.1 CDS CJE1666 NC_003912.7 1566303 1566962 R identified by similarity to OMNI:HP0861; hypothetical protein complement(1566303..1566962) Campylobacter jejuni RM1221 3232294 YP_179648.1 CDS carA NC_003912.7 1566959 1568077 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1566959..1568077) Campylobacter jejuni RM1221 3232295 YP_179649.1 CDS CJE1668 NC_003912.7 1568077 1568628 R identified by similarity to OMNI:HP1236; match to protein family HMM PF04368; hypothetical protein complement(1568077..1568628) Campylobacter jejuni RM1221 3232296 YP_179650.1 CDS CJE1669 NC_003912.7 1568721 1569239 R identified by similarity to OMNI:NTL01TT1342; hypothetical protein complement(1568721..1569239) Campylobacter jejuni RM1221 3232297 YP_179651.1 CDS CJE1670 NC_003912.7 1569232 1569660 R hypothetical protein complement(1569232..1569660) Campylobacter jejuni RM1221 3232298 YP_179652.1 CDS purA NC_003912.7 1569657 1570907 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(1569657..1570907) Campylobacter jejuni RM1221 3232299 YP_179653.1 CDS CJE1672 NC_003912.7 1571036 1571134 D hypothetical protein 1571036..1571134 Campylobacter jejuni RM1221 3232300 YP_179654.1 CDS CJE1673 NC_003912.7 1571172 1572380 D identified by similarity to SP:P31064; match to protein family HMM PF04143; inner membrane protein 1571172..1572380 Campylobacter jejuni RM1221 3232301 YP_179655.1 CDS CJE1674 NC_003912.7 1572384 1572611 D identified by similarity to OMNI:SO0109; match to protein family HMM PF01206; hypothetical protein 1572384..1572611 Campylobacter jejuni RM1221 3232302 YP_179656.1 CDS putP NC_003912.7 1572627 1574096 R identified by similarity to SP:P07117; match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium/proline permease complement(1572627..1574096) Campylobacter jejuni RM1221 3232303 YP_179657.1 CDS CJE1676 NC_003912.7 1574114 1577602 R identified by similarity to SP:P09546; match to protein family HMM PF00171; match to protein family HMM PF01619; bifunctional putA protein complement(1574114..1577602) Campylobacter jejuni RM1221 3232304 YP_179658.1 CDS selD NC_003912.7 1577733 1578755 R Selenoprotein. identified by similarity to SP:P16456; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase complement(1577733..1578755) Campylobacter jejuni RM1221 3232305 YP_179659.1 CDS CJE1678 NC_003912.7 1578765 1579337 R identified by similarity to OMNI:NTL01TT1750; match to protein family HMM PF01206; hypothetical protein complement(1578765..1579337) Campylobacter jejuni RM1221 3232306 YP_179660.1 CDS CJE1679 NC_003912.7 1579448 1581550 R identified by similarity to SP:P42258; match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(1579448..1581550) Campylobacter jejuni RM1221 3232307 YP_179661.1 CDS CJE1680 NC_003912.7 1581663 1582400 R identified by match to protein family HMM PF02573; molybdate transport repressor complement(1581663..1582400) Campylobacter jejuni RM1221 3232308 YP_179662.1 CDS fdhD NC_003912.7 1582393 1583175 R involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein complement(1582393..1583175) Campylobacter jejuni RM1221 3232309 YP_179663.1 CDS fdhC NC_003912.7 1583342 1584274 R identified by similarity to GP:48509; match to protein family HMM TIGR01583; formate dehydrogenase, cytochrome b subunit complement(1583342..1584274) Campylobacter jejuni RM1221 3232310 YP_179664.1 CDS fdhB NC_003912.7 1584271 1584912 R identified by similarity to SP:P27273; match to protein family HMM PF00037; formate dehydrogenase, iron-sulfur subunit complement(1584271..1584912) Campylobacter jejuni RM1221 3232311 YP_179665.1 CDS fdhA NC_003912.7 1584909 1587713 R Selenoprotein. identified by similarity to GP:48507; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; formate dehydrogenase, alpha subunit, selenocysteine-containing complement(1584909..1587713) Campylobacter jejuni RM1221 3232312 YP_179666.1 CDS CJE1685 NC_003912.7 1587713 1587904 R identified by match to protein family HMM TIGR01409; Tat pathway signal sequence domain-containing protein complement(1587713..1587904) Campylobacter jejuni RM1221 3232313 YP_179667.1 CDS CJE1686 NC_003912.7 1587879 1588580 R hypothetical protein complement(1587879..1588580) Campylobacter jejuni RM1221 3232314 YP_179668.1 CDS CJE1687 NC_003912.7 1588748 1588861 R hypothetical protein complement(1588748..1588861) Campylobacter jejuni RM1221 3232315 YP_179669.1 CDS nspC NC_003912.7 1588897 1590045 R identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047; carboxynorspermidine decarboxylase complement(1588897..1590045) Campylobacter jejuni RM1221 3232316 YP_179670.1 CDS CJE1689 NC_003912.7 1590169 1591710 D identified by match to protein family HMM PF00394; match to protein family HMM TIGR01409; oxidoreductase 1590169..1591710 Campylobacter jejuni RM1221 3232317 YP_179671.1 CDS CJE1690 NC_003912.7 1591712 1591933 D identified by match to protein family HMM PF02597; thiS family protein 1591712..1591933 Campylobacter jejuni RM1221 3232318 YP_179672.1 CDS CJE1691 NC_003912.7 1591934 1592377 D identified by match to protein family HMM PF02391; molybdopterin converting factor, subunit 2 1591934..1592377 Campylobacter jejuni RM1221 3232319 YP_179673.1 CDS CJE1692 NC_003912.7 1592374 1592790 D identified by similarity to OMNI:NTL01LI2517; hypothetical protein 1592374..1592790 Campylobacter jejuni RM1221 3232320 YP_179674.1 CDS CJE1693 NC_003912.7 1592793 1593983 D identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis MoeA protein 1592793..1593983 Campylobacter jejuni RM1221 3232321 YP_179675.1 CDS cas2 NC_003912.7 1594481 1594912 R identified by match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein complement(1594481..1594912) Campylobacter jejuni RM1221 3232322 YP_179676.1 CDS cas1 NC_003912.7 1594905 1595795 R identified by match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein complement(1594905..1595795) Campylobacter jejuni RM1221 3232323 YP_179677.1 CDS CJE1698 NC_003912.7 1598988 1599164 D hypothetical protein 1598988..1599164 Campylobacter jejuni RM1221 3232325 YP_179678.1 CDS purM NC_003912.7 1600373 1601362 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(1600373..1601362) Campylobacter jejuni RM1221 3232327 YP_179679.1 CDS coaE NC_003912.7 1601423 1602028 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1601423..1602028 Campylobacter jejuni RM1221 3232328 YP_179680.1 CDS dapF NC_003912.7 1602025 1602774 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1602025..1602774 Campylobacter jejuni RM1221 3232329 YP_179681.1 CDS CJE1703 NC_003912.7 1602749 1603480 D mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 1602749..1603480 Campylobacter jejuni RM1221 3232330 YP_179682.1 CDS CJE1704 NC_003912.7 1603477 1604514 R identified by similarity to OMNI:NTL01HP01233; hypothetical protein complement(1603477..1604514) Campylobacter jejuni RM1221 3232331 YP_179683.1 CDS CJE1705 NC_003912.7 1604579 1605028 R identified by match to protein family HMM PF00210; bacterioferritin complement(1604579..1605028) Campylobacter jejuni RM1221 3232332 YP_179684.1 CDS pgi NC_003912.7 1605155 1606375 R catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate isomerase complement(1605155..1606375) Campylobacter jejuni RM1221 3232333 YP_179685.1 CDS galU NC_003912.7 1606369 1607193 R identified by similarity to GP:1628575; match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(1606369..1607193) Campylobacter jejuni RM1221 3232334 YP_179686.1 CDS acs NC_003912.7 1607275 1609248 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(1607275..1609248) Campylobacter jejuni RM1221 3232335 YP_179687.1 CDS CJE1709 NC_003912.7 1609387 1610382 R identified by similarity to GP:14330290; match to protein family HMM PF00005; tungsten ABC transporter ATP-binding protein complement(1609387..1610382) Campylobacter jejuni RM1221 3232336 YP_179688.1 CDS CJE1710 NC_003912.7 1610384 1611070 R identified by similarity to GP:14330289; match to protein family HMM PF00528; tungstate ABC transporter permease complement(1610384..1611070) Campylobacter jejuni RM1221 3232337 YP_179689.1 CDS CJE1711 NC_003912.7 1611149 1611958 D identified by similarity to GP:14330288; tungstate ABC transporter periplasmic tungstate-binding protein 1611149..1611958 Campylobacter jejuni RM1221 3232338 YP_179690.1 CDS CJE1712 NC_003912.7 1612100 1612867 D identified by match to protein family HMM PF03746; LamB/YcsF family protein 1612100..1612867 Campylobacter jejuni RM1221 3232339 YP_179691.1 CDS CJE1713 NC_003912.7 1612877 1613617 D identified by similarity to OMNI:NTL01TT1494; match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein 1612877..1613617 Campylobacter jejuni RM1221 3232340 YP_179692.1 CDS CJE1714 NC_003912.7 1613598 1614563 D identified by similarity to OMNI:NTL01OI2676; match to protein family HMM PF02626; match to protein family HMM TIGR00724; hypothetical protein 1613598..1614563 Campylobacter jejuni RM1221 3232341 YP_179693.1 CDS CJE1715 NC_003912.7 1614560 1615456 R identified by similarity to OMNI:NTL02LI0514; match to protein family HMM PF00892; integral membrane protein complement(1614560..1615456) Campylobacter jejuni RM1221 3232342 YP_179694.1 CDS CJE1716 NC_003912.7 1615489 1616067 R identified by match to protein family HMM PF02525; flavodoxin complement(1615489..1616067) Campylobacter jejuni RM1221 3232343 YP_179695.1 CDS CJE1717 NC_003912.7 1616167 1616514 D identified by match to protein family HMM PF01638; transcriptional regulator 1616167..1616514 Campylobacter jejuni RM1221 3232344 YP_179696.1 CDS CJE1719 NC_003912.7 1616954 1618030 R identified by match to protein family HMM PF00107; zinc-binding dehydrogenase family oxidoreductase complement(1616954..1618030) Campylobacter jejuni RM1221 3232346 YP_179697.1 CDS CJE1721 NC_003912.7 1620475 1622805 D identified by similarity to GP:19881228; RloC protein 1620475..1622805 Campylobacter jejuni RM1221 3232348 YP_179698.1 CDS CJE1723 NC_003912.7 1624123 1625193 D identified by similarity to GP:19881229; match to protein family HMM PF02661; MloA protein 1624123..1625193 Campylobacter jejuni RM1221 3232350 YP_179699.1 CDS hsdM NC_003912.7 1625194 1626678 D identified by similarity to SP:Q47282; match to protein family HMM PF02384; match to protein family HMM PF02506; type I restriction-modification system subunit M 1625194..1626678 Campylobacter jejuni RM1221 3232351 YP_179700.1 CDS CJE1725 NC_003912.7 1626756 1627139 R identified by similarity to SP:P20370; match to protein family HMM PF02627; 4-carboxymuconolactone decarboxylase complement(1626756..1627139) Campylobacter jejuni RM1221 3232352 YP_179701.1 CDS CJE1726 NC_003912.7 1627119 1627286 D hypothetical protein 1627119..1627286 Campylobacter jejuni RM1221 3232353 YP_179702.1 CDS CJE1727 NC_003912.7 1627327 1627746 R identified by similarity to OMNI:NTL01BMA0801; hypothetical protein complement(1627327..1627746) Campylobacter jejuni RM1221 3232354 YP_179703.1 CDS CJE1728 NC_003912.7 1627804 1628979 R identified by similarity to SP:P77389; transporter complement(1627804..1628979) Campylobacter jejuni RM1221 3232355 YP_179704.1 CDS CJE1730 NC_003912.7 1629937 1630884 D identified by similarity to GP:27314600; match to protein family HMM PF03773; permease 1629937..1630884 Campylobacter jejuni RM1221 3232357 YP_179705.1 CDS arsR NC_003912.7 1630894 1631211 D identified by similarity to SP:P15905; match to protein family HMM PF01022; arsenical resistance operon repressor 1630894..1631211 Campylobacter jejuni RM1221 3232358 YP_179706.1 CDS arsC NC_003912.7 1631208 1631630 D identified by similarity to SP:Q01257; match to protein family HMM PF01451; arsenate reductase 1631208..1631630 Campylobacter jejuni RM1221 3232359 YP_179707.1 CDS CJE1733 NC_003912.7 1631624 1632667 D identified by similarity to GP:5802942; match to protein family HMM PF01758; arsenical-resistance protein 1631624..1632667 Campylobacter jejuni RM1221 3232360 YP_179708.1 CDS CJE1735 NC_003912.7 1633202 1635157 D identified by similarity to SP:P39215; match to protein family HMM PF00015; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1633202..1635157 Campylobacter jejuni RM1221 3232362 YP_179709.1 CDS pflA NC_003912.7 1635200 1637566 R identified by similarity to OMNI:NTL01CJ01492; paralyzed flagella protein PflA complement(1635200..1637566) Campylobacter jejuni RM1221 3232363 YP_179710.1 CDS nuoN NC_003912.7 1637588 1638976 R identified by similarity to SP:P33608; match to protein family HMM PF00361; NADH-quinone oxidoreductase, N subunit complement(1637588..1638976) Campylobacter jejuni RM1221 3232364 YP_179711.1 CDS nuoM NC_003912.7 1638966 1640453 R identified by similarity to SP:P50974; match to protein family HMM PF00361; NADH-quinone oxidoreductase, M subunit complement(1638966..1640453) Campylobacter jejuni RM1221 3232365 YP_179712.1 CDS nuoL NC_003912.7 1640455 1642245 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(1640455..1642245) Campylobacter jejuni RM1221 3232366 YP_179713.1 CDS nuoK NC_003912.7 1642247 1642543 R identified by similarity to SP:P50940; match to protein family HMM PF00420; NADH-quinone oxidoreductase, K subunit complement(1642247..1642543) Campylobacter jejuni RM1221 3232367 YP_179714.1 CDS nuoJ NC_003912.7 1642540 1643058 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(1642540..1643058) Campylobacter jejuni RM1221 3232368 YP_179715.1 CDS nuoI NC_003912.7 1643055 1643696 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(1643055..1643696) Campylobacter jejuni RM1221 3232369 YP_179716.1 CDS nuoH NC_003912.7 1643706 1644704 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(1643706..1644704) Campylobacter jejuni RM1221 3232370 YP_179717.1 CDS nuoG NC_003912.7 1644697 1647159 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G complement(1644697..1647159) Campylobacter jejuni RM1221 3232371 YP_179718.1 CDS CJE1745 NC_003912.7 1647156 1647848 R hypothetical protein complement(1647156..1647848) Campylobacter jejuni RM1221 3232372 YP_179719.1 CDS CJE1746 NC_003912.7 1647845 1648072 R identified by similarity to OMNI:HP1264; hypothetical protein complement(1647845..1648072) Campylobacter jejuni RM1221 3232373 YP_179720.1 CDS nuoD NC_003912.7 1648069 1649295 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(1648069..1649295) Campylobacter jejuni RM1221 3232374 YP_179721.1 CDS nuoC NC_003912.7 1649297 1650088 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit C complement(1649297..1650088) Campylobacter jejuni RM1221 3232375 YP_179722.1 CDS nuoB NC_003912.7 1650088 1650591 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(1650088..1650591) Campylobacter jejuni RM1221 3232376 YP_179723.1 CDS nuoA NC_003912.7 1650573 1650962 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit A complement(1650573..1650962) Campylobacter jejuni RM1221 3232377 YP_179724.1 CDS CJE1751 NC_003912.7 1651075 1651740 R identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein complement(1651075..1651740) Campylobacter jejuni RM1221 3232378 YP_179725.1 CDS CJE1752 NC_003912.7 1651733 1652443 R identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein complement(1651733..1652443) Campylobacter jejuni RM1221 3232379 YP_179726.1 CDS CJE1753 NC_003912.7 1652440 1653228 R identified by match to protein family HMM PF00528; peptide ABC transporter permease complement(1652440..1653228) Campylobacter jejuni RM1221 3232380 YP_179727.1 CDS CJE1754 NC_003912.7 1653221 1654165 R identified by match to protein family HMM PF00528; peptide ABC transporter permease complement(1653221..1654165) Campylobacter jejuni RM1221 3232381 YP_179728.1 CDS CJE1755 NC_003912.7 1654165 1655700 R identified by similarity to SP:P42061; match to protein family HMM PF00496; peptide ABC transporter substrate-binding protein complement(1654165..1655700) Campylobacter jejuni RM1221 3232382 YP_179729.1 CDS CJE1756 NC_003912.7 1655809 1658580 R identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913; oxidoreductase, FAD-binding, iron-sulfur cluster-binding complement(1655809..1658580) Campylobacter jejuni RM1221 3232383 YP_179730.1 CDS CJE1757 NC_003912.7 1658732 1659154 D identified by similarity to SP:P49852; match to protein family HMM PF00042; flavohemoprotein, truncation 1658732..1659154 Campylobacter jejuni RM1221 3232384 YP_179731.1 CDS CJE1758 NC_003912.7 1659174 1660805 R efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane component/ATP-binding component complement(1659174..1660805) Campylobacter jejuni RM1221 3232385 YP_179732.1 CDS CJE1760 NC_003912.7 1662239 1662583 D identified by similarity to GP:26986249; hypothetical protein 1662239..1662583 Campylobacter jejuni RM1221 3232387 YP_179733.1 CDS CJE1761 NC_003912.7 1662616 1663035 D identified by similarity to GP:27902224; metallo-beta-lactamase 1662616..1663035 Campylobacter jejuni RM1221 3232388 YP_179734.1 CDS infA NC_003912.7 1663123 1663341 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1663123..1663341 Campylobacter jejuni RM1221 3232389 YP_179735.1 CDS rpmJ NC_003912.7 1663513 1663626 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 1663513..1663626 Campylobacter jejuni RM1221 3232390 YP_179736.1 CDS rpsM NC_003912.7 1663629 1663994 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1663629..1663994 Campylobacter jejuni RM1221 3232391 YP_179737.1 CDS rpsK NC_003912.7 1664004 1664396 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1664004..1664396 Campylobacter jejuni RM1221 3232392 YP_179738.1 CDS rpsD NC_003912.7 1664424 1665050 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1664424..1665050 Campylobacter jejuni RM1221 3232393 YP_179739.1 CDS rpoA NC_003912.7 1665063 1666076 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1665063..1666076 Campylobacter jejuni RM1221 3232394 YP_179740.1 CDS rplQ NC_003912.7 1666080 1666433 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1666080..1666433 Campylobacter jejuni RM1221 3232395 YP_179741.1 CDS hisG NC_003912.7 1666606 1667505 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 1666606..1667505 Campylobacter jejuni RM1221 3232396 YP_179742.1 CDS hisD NC_003912.7 1667513 1668799 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1667513..1668799 Campylobacter jejuni RM1221 3232397 YP_179743.1 CDS hisB NC_003912.7 1668796 1669854 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 1668796..1669854 Campylobacter jejuni RM1221 3232398 YP_179744.1 CDS hisH NC_003912.7 1669851 1670438 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1669851..1670438 Campylobacter jejuni RM1221 3232399 YP_179745.1 CDS hisA NC_003912.7 1670435 1671166 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1670435..1671166 Campylobacter jejuni RM1221 3232400 YP_179746.1 CDS CJE1774 NC_003912.7 1671151 1672089 D identified by similarity to GP:28076667; match to protein family HMM PF04373; HrgA protein 1671151..1672089 Campylobacter jejuni RM1221 3232401 YP_179747.1 CDS hisF-2 NC_003912.7 1672090 1672857 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1672090..1672857 Campylobacter jejuni RM1221 3232402 YP_179748.1 CDS hisI NC_003912.7 1672859 1673482 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 1672859..1673482 Campylobacter jejuni RM1221 3232403 YP_179749.1 CDS CJE1777 NC_003912.7 1673507 1674667 R 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase complement(1673507..1674667) Campylobacter jejuni RM1221 3232404 YP_179750.1 CDS mrp NC_003912.7 1674693 1675799 R identified by similarity to SP:P21590; match to protein family HMM PF01883; ATP/GTP-binding protein complement(1674693..1675799) Campylobacter jejuni RM1221 3232405 YP_179751.1 CDS ispDF NC_003912.7 1675922 1677037 D bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 1675922..1677037 Campylobacter jejuni RM1221 3232406 YP_179752.1 CDS CJE1780 NC_003912.7 1677034 1677921 D identified by similarity to OMNI:HP1021; match to protein family HMM PF00072; match to protein family HMM TIGR01199; DNA-binding response regulator 1677034..1677921 Campylobacter jejuni RM1221 3232407 YP_179753.1 CDS CJE1781 NC_003912.7 1677899 1679059 D ATP-sulfurylase 1677899..1679059 Campylobacter jejuni RM1221 3232408 YP_179754.1 CDS pgpA NC_003912.7 1679064 1679564 D identified by similarity to SP:P18200; match to protein family HMM PF04608; phosphatidylglycerophosphatase A 1679064..1679564 Campylobacter jejuni RM1221 3232409 YP_179755.1 CDS rpsT NC_003912.7 1679643 1679906 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1679643..1679906 Campylobacter jejuni RM1221 3232410 YP_179756.1 CDS prfA NC_003912.7 1679925 1680992 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1679925..1680992 Campylobacter jejuni RM1221 3232411 YP_179757.1 CDS CJE1785 NC_003912.7 1681006 1681761 R identified by similarity to OMNI:NTL01CJ01539; match to protein family HMM PF03774; hypothetical protein complement(1681006..1681761) Campylobacter jejuni RM1221 3232412 YP_179758.1 CDS chuA NC_003912.7 1681954 1684110 D identified by similarity to OMNI:NTL01CJ01540; match to protein family HMM PF00593; TonB-dependent heme receptor 1681954..1684110 Campylobacter jejuni RM1221 3232413 YP_179759.1 CDS CJE1787 NC_003912.7 1684085 1685071 D identified by similarity to SP:Q56992; match to protein family HMM PF01032; hemin ABC transporter permease 1684085..1685071 Campylobacter jejuni RM1221 3232414 YP_179760.1 CDS CJE1788 NC_003912.7 1685071 1685847 D identified by match to protein family HMM PF00005; hemin ABC transporter ATP-binding protein 1685071..1685847 Campylobacter jejuni RM1221 3232415 YP_179761.1 CDS CJE1789 NC_003912.7 1685844 1686650 D identified by match to protein family HMM PF01497; hemin ABC transporter periplasmic hemin-binding protein 1685844..1686650 Campylobacter jejuni RM1221 3232416 YP_179762.1 CDS kgtP NC_003912.7 1687671 1688930 D identified by similarity to SP:P17448; match to protein family HMM PF00083; alpha-ketoglutarate permease 1687671..1688930 Campylobacter jejuni RM1221 3232418 YP_179763.1 CDS mutY NC_003912.7 1688916 1689935 R identified by similarity to SP:P17802; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase complement(1688916..1689935) Campylobacter jejuni RM1221 3232419 YP_179764.1 CDS CJE1793 NC_003912.7 1690008 1690760 D identified by similarity to GB:AAP76658.1; hypothetical protein 1690008..1690760 Campylobacter jejuni RM1221 3232420 YP_179765.1 CDS CJE1794 NC_003912.7 1691440 1692420 D identified by similarity to GB:CAB71026.1; match to protein family HMM PF00383; riboflavin biosynthesis protein RibD 1691440..1692420 Campylobacter jejuni RM1221 3232421 YP_179766.1 CDS CJE1795 NC_003912.7 1692401 1692922 D hypothetical protein 1692401..1692922 Campylobacter jejuni RM1221 3232422 YP_179767.1 CDS sdaA NC_003912.7 1692930 1694294 R identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase complement(1692930..1694294) Campylobacter jejuni RM1221 3232423 YP_179768.1 CDS sdaC NC_003912.7 1694309 1695559 R identified by similarity to SP:P36559; serine transporter complement(1694309..1695559) Campylobacter jejuni RM1221 3232424 YP_179769.1 CDS CJE1798 NC_003912.7 1695818 1696234 R identified by similarity to GP:29338228; hypothetical protein complement(1695818..1696234) Campylobacter jejuni RM1221 3232425 YP_179770.1 CDS CJE1799 NC_003912.7 1696300 1697043 R identified by similarity to OMNI:NTL01FN0259; hypothetical protein complement(1696300..1697043) Campylobacter jejuni RM1221 3232426 YP_179771.1 CDS exbB-2 NC_003912.7 1697202 1697627 D identified by similarity to SP:P43008; match to protein family HMM PF01618; TonB system transport protein ExbB 1697202..1697627 Campylobacter jejuni RM1221 3232427 YP_179772.1 CDS exbD NC_003912.7 1697599 1698009 D identified by similarity to SP:P43009; match to protein family HMM PF02472; biopolymer transport exbD protein 1697599..1698009 Campylobacter jejuni RM1221 3232428 YP_179773.1 CDS CJE1803 NC_003912.7 1698701 1699579 R hypothetical protein complement(1698701..1699579) Campylobacter jejuni RM1221 3232430 YP_179774.1 CDS CJE1804 NC_003912.7 1699633 1699830 R hypothetical protein complement(1699633..1699830) Campylobacter jejuni RM1221 3232431 YP_179775.1 CDS CJE1805 NC_003912.7 1699952 1700935 D identified by similarity to PIR:A71984; hypothetical protein 1699952..1700935 Campylobacter jejuni RM1221 3232432 YP_179776.1 CDS aroC NC_003912.7 1701022 1702110 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1701022..1702110) Campylobacter jejuni RM1221 3232433 YP_179777.1 CDS rnc NC_003912.7 1702110 1702784 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1702110..1702784) Campylobacter jejuni RM1221 3232434 YP_179778.1 CDS rnhA NC_003912.7 1702771 1703211 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(1702771..1703211) Campylobacter jejuni RM1221 3232435 YP_179779.1 CDS CJE1809 NC_003912.7 1703198 1704184 R identified by similarity to OMNI:HP0660; hypothetical protein complement(1703198..1704184) Campylobacter jejuni RM1221 3232436 YP_179780.1 CDS dnaG NC_003912.7 1704254 1706071 D synthesizes RNA primers at the replication forks; DNA primase 1704254..1706071 Campylobacter jejuni RM1221 3232437 YP_179781.1 CDS CJE1811 NC_003912.7 1706153 1706425 D identified by match to protein family HMM PF01106; NifU family protein 1706153..1706425 Campylobacter jejuni RM1221 3232438 YP_179782.1 CDS CJE1812 NC_003912.7 1706412 1706963 D identified by similarity to OMNI:HP1493; hypothetical protein 1706412..1706963 Campylobacter jejuni RM1221 3232439 YP_179783.1 CDS murE NC_003912.7 1706947 1708230 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1706947..1708230 Campylobacter jejuni RM1221 3232440 YP_179784.1 CDS CJE1814 NC_003912.7 1708234 1708545 D identified by similarity to SP:O34247; match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 1708234..1708545 Campylobacter jejuni RM1221 3232441 YP_179785.1 CDS CJE1815 NC_003912.7 1708542 1709636 D identified by match to protein family HMM PF00595; PDZ domain-containing protein 1708542..1709636 Campylobacter jejuni RM1221 3232442 YP_179786.1 CDS ispA NC_003912.7 1709633 1710478 D identified by similarity to SP:O66126; match to protein family HMM PF00348; geranyltranstransferase 1709633..1710478 Campylobacter jejuni RM1221 3232443 YP_179787.1 CDS tkt NC_003912.7 1710488 1712386 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1710488..1712386 Campylobacter jejuni RM1221 3232444 YP_179788.1 CDS CJE1818 NC_003912.7 1712388 1713497 D identified by similarity to GP:28974221; match to protein family HMM PF02405; match to protein family HMM TIGR00056; ABC transporter permease 1712388..1713497 Campylobacter jejuni RM1221 3232445 YP_179789.1 CDS CJE1819 NC_003912.7 1713498 1714220 D identified by similarity to OMNI:BR1020; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1713498..1714220 Campylobacter jejuni RM1221 3232446 YP_179790.1 CDS CJE1820 NC_003912.7 1714223 1715113 D identified by similarity to GP:28974223; match to protein family HMM PF02470; ABC transporter periplasmic substrate-binding protein 1714223..1715113 Campylobacter jejuni RM1221 3232447 YP_179791.1 CDS CJE1821 NC_003912.7 1715113 1715712 D identified by similarity to SP:P29285; lipoprotein 1715113..1715712 Campylobacter jejuni RM1221 3232448 YP_179792.1 CDS CJE1822 NC_003912.7 1715768 1716268 D identified by similarity to OMNI:NTL01HP00346; hypothetical protein 1715768..1716268 Campylobacter jejuni RM1221 3232449 YP_179793.1 CDS map NC_003912.7 1716639 1717397 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1716639..1717397) Campylobacter jejuni RM1221 3232450 YP_179794.1 CDS murI NC_003912.7 1717407 1718150 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(1717407..1718150) Campylobacter jejuni RM1221 3232451 YP_179795.1 CDS nlpC NC_003912.7 1718152 1718610 R identified by similarity to SP:P23898; match to protein family HMM PF00877; lipoprotein NlpC complement(1718152..1718610) Campylobacter jejuni RM1221 3232452 YP_179796.1 CDS nhaA NC_003912.7 1718619 1719788 R exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter complement(1718619..1719788) Campylobacter jejuni RM1221 3232453 YP_179797.1 CDS nhaA-2 NC_003912.7 1719785 1720933 R identified by similarity to SP:P13738; match to protein family HMM TIGR00773; Na+/H+ antiporter NhaA complement(1719785..1720933) Campylobacter jejuni RM1221 3232454 YP_179798.1 CDS CJE1828 NC_003912.7 1721076 1721258 R hypothetical protein complement(1721076..1721258) Campylobacter jejuni RM1221 3232455 YP_179799.1 CDS CJE1829 NC_003912.7 1721618 1721731 D hypothetical protein 1721618..1721731 Campylobacter jejuni RM1221 3232456 YP_179800.1 CDS CJE1830 NC_003912.7 1722176 1724266 D identified by similarity to GP:12718499; similarity to OMNI:NTL01PM0455; match to protein family HMM PF03239; FTR1 family iron permease 1722176..1724266 Campylobacter jejuni RM1221 3232457 YP_179801.1 CDS CJE1831 NC_003912.7 1724263 1724802 D identified by similarity to OMNI:NTL01PM0454; hypothetical protein 1724263..1724802 Campylobacter jejuni RM1221 3232458 YP_179802.1 CDS CJE1832 NC_003912.7 1724885 1726288 D identified by similarity to OMNI:NTL01PM0453; match to protein family HMM PF04945; hypothetical protein 1724885..1726288 Campylobacter jejuni RM1221 3232459 YP_179803.1 CDS CJE1833 NC_003912.7 1726278 1727567 D identified by similarity to OMNI:NTL01PM0452; match to protein family HMM PF02687; ABC transporter permease 1726278..1727567 Campylobacter jejuni RM1221 3232460 YP_179804.1 CDS CJE1834 NC_003912.7 1727557 1728675 D identified by similarity to OMNI:NTL01PM0451; match to protein family HMM PF02687; ABC transporter permease 1727557..1728675 Campylobacter jejuni RM1221 3232461 YP_179805.1 CDS CJE1835 NC_003912.7 1728672 1729325 D identified by similarity to GB:AAK02532.1; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1728672..1729325 Campylobacter jejuni RM1221 3232462 YP_179806.1 CDS CJE1836 NC_003912.7 1729322 1729810 D thiredoxin,-like protein 1729322..1729810 Campylobacter jejuni RM1221 3232463 YP_179807.1 CDS CJE1837 NC_003912.7 1729771 1730274 D thioredoxin 1729771..1730274 Campylobacter jejuni RM1221 3232464 YP_179808.1 CDS CJE1838 NC_003912.7 1730284 1730721 R identified by similarity to OMNI:NTL01PM1941; match to protein family HMM PF04214; hypothetical protein complement(1730284..1730721) Campylobacter jejuni RM1221 3232465 YP_179809.1 CDS CJE1839 NC_003912.7 1730812 1730955 R hypothetical protein complement(1730812..1730955) Campylobacter jejuni RM1221 3232466 YP_179810.1 CDS CJE1840 NC_003912.7 1731021 1731326 R hypothetical protein complement(1731021..1731326) Campylobacter jejuni RM1221 3232467 YP_179811.1 CDS CJE1841 NC_003912.7 1732089 1732937 R catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase complement(1732089..1732937) Campylobacter jejuni RM1221 3232468 YP_179812.1 CDS CJE1842 NC_003912.7 1732937 1733599 R identified by similarity to OMNI:HP0156; hypothetical protein complement(1732937..1733599) Campylobacter jejuni RM1221 3232469 YP_179813.1 CDS CJE1843 NC_003912.7 1733589 1733792 R identified by similarity to OMNI:HP0155; hypothetical protein complement(1733589..1733792) Campylobacter jejuni RM1221 3232470 YP_179814.1 CDS eno NC_003912.7 1733858 1735102 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1733858..1735102) Campylobacter jejuni RM1221 3232471 YP_179815.1 CDS recA NC_003912.7 1735102 1736133 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(1735102..1736133) Campylobacter jejuni RM1221 3232472 YP_179816.1 CDS CJE1846 NC_003912.7 1736239 1737099 D identified by similarity to OMNI:NTL01AA00225; match to protein family HMM PF02642; hypothetical protein 1736239..1737099 Campylobacter jejuni RM1221 3232473 YP_179817.1 CDS fliQ NC_003912.7 1737111 1737380 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 1737111..1737380 Campylobacter jejuni RM1221 3232474 YP_179818.1 CDS murB NC_003912.7 1737377 1738153 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1737377..1738153 Campylobacter jejuni RM1221 3232475 YP_179819.1 CDS CJE1849 NC_003912.7 1738177 1738941 R hypothetical protein complement(1738177..1738941) Campylobacter jejuni RM1221 3232476 YP_179820.1 CDS cysQ NC_003912.7 1738987 1739751 R identified by similarity to SP:P22255; match to protein family HMM PF00459; CysQ complement(1738987..1739751) Campylobacter jejuni RM1221 3232477 YP_179821.1 CDS gltA NC_003912.7 1739831 1741099 R identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798; citrate synthase complement(1739831..1741099) Campylobacter jejuni RM1221 3232478 YP_179822.1 CDS CJE1852 NC_003912.7 1741214 1742389 R identified by match to protein family HMM PF00999; sodium/hydrogen exchanger family protein complement(1741214..1742389) Campylobacter jejuni RM1221 3232479 YP_179823.1 CDS bioB NC_003912.7 1742370 1743206 R catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase complement(1742370..1743206) Campylobacter jejuni RM1221 3232480 YP_179824.1 CDS topA NC_003912.7 1743208 1745310 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1743208..1745310) Campylobacter jejuni RM1221 3232481 YP_179825.1 CDS CJE1855 NC_003912.7 1745505 1746776 D identified by similarity to GP:4115707; match to protein family HMM PF00083; major facilitator superfamily protein 1745505..1746776 Campylobacter jejuni RM1221 3232482 YP_179826.1 CDS secY NC_003912.7 1746804 1748069 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1746804..1748069) Campylobacter jejuni RM1221 3232483 YP_179827.1 CDS rplO NC_003912.7 1748069 1748461 R late assembly protein; 50S ribosomal protein L15 complement(1748069..1748461) Campylobacter jejuni RM1221 3232484 YP_179828.1 CDS rpsE NC_003912.7 1748466 1748909 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1748466..1748909) Campylobacter jejuni RM1221 3232485 YP_179829.1 CDS rplR NC_003912.7 1748921 1749277 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(1748921..1749277) Campylobacter jejuni RM1221 3232486 YP_179830.1 CDS rplF NC_003912.7 1749287 1749823 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1749287..1749823) Campylobacter jejuni RM1221 3232487 YP_179831.1 CDS rpsH NC_003912.7 1749902 1750297 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1749902..1750297) Campylobacter jejuni RM1221 3232488 YP_179832.1 CDS rpsN NC_003912.7 1750307 1750492 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(1750307..1750492) Campylobacter jejuni RM1221 3232489 YP_179833.1 CDS rplE NC_003912.7 1750494 1751039 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1750494..1751039) Campylobacter jejuni RM1221 3232490 YP_179834.1 CDS rplX NC_003912.7 1751043 1751276 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(1751043..1751276) Campylobacter jejuni RM1221 3232491 YP_179835.1 CDS rplN NC_003912.7 1751276 1751644 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(1751276..1751644) Campylobacter jejuni RM1221 3232492 YP_179836.1 CDS rpsQ NC_003912.7 1751644 1751895 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(1751644..1751895) Campylobacter jejuni RM1221 3232493 YP_179837.1 CDS rpmC NC_003912.7 1751905 1752090 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1751905..1752090) Campylobacter jejuni RM1221 3232494 YP_179838.1 CDS rplP NC_003912.7 1752077 1752502 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1752077..1752502) Campylobacter jejuni RM1221 3232495 YP_179839.1 CDS rpsC NC_003912.7 1752505 1753206 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(1752505..1753206) Campylobacter jejuni RM1221 3232496 YP_179840.1 CDS rplV NC_003912.7 1753206 1753631 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1753206..1753631) Campylobacter jejuni RM1221 3232497 YP_179841.1 CDS rpsS NC_003912.7 1753642 1753923 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(1753642..1753923) Campylobacter jejuni RM1221 3232498 YP_179842.1 CDS rplB NC_003912.7 1753925 1754755 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1753925..1754755) Campylobacter jejuni RM1221 3232499 YP_179843.1 CDS rplW NC_003912.7 1754757 1755038 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(1754757..1755038) Campylobacter jejuni RM1221 3232500 YP_179844.1 CDS rplD NC_003912.7 1755041 1755655 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1755041..1755655) Campylobacter jejuni RM1221 3232501 YP_179845.1 CDS rplC NC_003912.7 1755652 1756227 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1755652..1756227) Campylobacter jejuni RM1221 3232518 YP_179846.1 CDS rpsJ NC_003912.7 1756237 1756548 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(1756237..1756548) Campylobacter jejuni RM1221 3230635 YP_179847.1 CDS CJE1877 NC_003912.7 1756607 1756708 D hypothetical protein 1756607..1756708 Campylobacter jejuni RM1221 3230636 YP_179848.1 CDS CJE1878 NC_003912.7 1756746 1757507 R identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridylate synthase complement(1756746..1757507) Campylobacter jejuni RM1221 3230637 YP_179849.1 CDS CJE1879 NC_003912.7 1757543 1759531 R identified by similarity to GP:28203198; match to protein family HMM PF00753; match to protein family HMM TIGR00649; metallo-beta-lactamase complement(1757543..1759531) Campylobacter jejuni RM1221 3230638 YP_179850.1 CDS ksgA NC_003912.7 1759506 1760306 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1759506..1760306) Campylobacter jejuni RM1221 3230639 YP_179851.1 CDS CJE1881 NC_003912.7 1760387 1760923 D identified by similarity to OMNI:NTL01HP01407; hypothetical protein 1760387..1760923 Campylobacter jejuni RM1221 3230640 YP_179852.1 CDS CJE1882 NC_003912.7 1760947 1762017 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1760947..1762017 Campylobacter jejuni RM1221 3230641 YP_179853.1 CDS CJE1883 NC_003912.7 1762014 1762112 D hypothetical protein 1762014..1762112 Campylobacter jejuni RM1221 3230642 YP_179854.1 CDS CJE1884 NC_003912.7 1762560 1763495 D identified by similarity to SP:P39907; lipopolysaccharide core biosynthesis protien 1762560..1763495 Campylobacter jejuni RM1221 3230643 YP_179855.1 CDS CJE1885 NC_003912.7 1763817 1764347 D identified by match to protein family HMM PF00583; acetyltransferase 1763817..1764347 Campylobacter jejuni RM1221 3230644 YP_179856.1 CDS leuD NC_003912.7 1764327 1764929 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(1764327..1764929) Campylobacter jejuni RM1221 3230645 YP_179857.1 CDS leuC NC_003912.7 1764931 1766337 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(1764931..1766337) Campylobacter jejuni RM1221 3230646 YP_179858.1 CDS leuB NC_003912.7 1766330 1767406 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(1766330..1767406) Campylobacter jejuni RM1221 3230647 YP_179859.1 CDS leuA NC_003912.7 1767403 1768938 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(1767403..1768938) Campylobacter jejuni RM1221 3230648 YP_179860.1 CDS CJE1890 NC_003912.7 1769258 1769887 D hypothetical protein 1769258..1769887 Campylobacter jejuni RM1221 3230649 YP_179861.1 CDS CJE1891 NC_003912.7 1769923 1770567 R identified by similarity to OMNI:CC0747; hypothetical protein complement(1769923..1770567) Campylobacter jejuni RM1221 3230650 YP_179862.1 CDS CJE1892 NC_003912.7 1770705 1771088 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(1770705..1771088) Campylobacter jejuni RM1221 3230651 YP_179863.1 CDS CJE1893 NC_003912.7 1771248 1771847 D identified by similarity to OMNI:NTL01AA00295; hypothetical protein 1771248..1771847 Campylobacter jejuni RM1221 3230652 YP_179864.1 CDS metA NC_003912.7 1771852 1772733 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(1771852..1772733) Campylobacter jejuni RM1221 3230653 YP_179865.1 CDS metX NC_003912.7 1772817 1774088 R identified by similarity to GP:1835113; match to protein family HMM PF01053; match to protein family HMM TIGR01326; homoserine O-acetyltransferase complement(1772817..1774088) Campylobacter jejuni RM1221 3230654 YP_179866.1 CDS flgE NC_003912.7 1774513 1777050 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(1774513..1777050) Campylobacter jejuni RM1221 3230655 YP_179867.1 CDS ruvC NC_003912.7 1777254 1777736 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(1777254..1777736) Campylobacter jejuni RM1221 3230656 CJE_tRNA-Ala-1 tRNA CJE_tRNA-Ala-1 NC_003912.7 39013 39088 D tRNA-Ala 39013..39088 Campylobacter jejuni RM1221 3232528 CJE_tRNA-Ile-1 tRNA CJE_tRNA-Ile-1 NC_003912.7 39097 39173 D tRNA-Ile 39097..39173 Campylobacter jejuni RM1221 3232547 CJE_tRNA-Glu-1 tRNA CJE_tRNA-Glu-1 NC_003912.7 164490 164564 D tRNA-Glu 164490..164564 Campylobacter jejuni RM1221 3232542 CJE_tRNA-Ala-2 tRNA CJE_tRNA-Ala-2 NC_003912.7 433828 433903 D tRNA-Ala 433828..433903 Campylobacter jejuni RM1221 3232529 CJE_tRNA-Ile-2 tRNA CJE_tRNA-Ile-2 NC_003912.7 433912 433988 D tRNA-Ile 433912..433988 Campylobacter jejuni RM1221 3232548 CJE_tRNA-Thr-1 tRNA CJE_tRNA-Thr-1 NC_003912.7 472026 472101 D tRNA-Thr 472026..472101 Campylobacter jejuni RM1221 3232565 CJE_tRNA-Tyr-1 tRNA CJE_tRNA-Tyr-1 NC_003912.7 472152 472237 D tRNA-Tyr 472152..472237 Campylobacter jejuni RM1221 3232568 CJE_tRNA-Gly-1 tRNA CJE_tRNA-Gly-1 NC_003912.7 472244 472320 D tRNA-Gly 472244..472320 Campylobacter jejuni RM1221 3232543 CJE_tRNA-Thr-2 tRNA CJE_tRNA-Thr-2 NC_003912.7 472422 472496 D tRNA-Thr 472422..472496 Campylobacter jejuni RM1221 3232566 CJE_tRNA-Trp-1 tRNA CJE_tRNA-Trp-1 NC_003912.7 473988 474063 D tRNA-Trp 473988..474063 Campylobacter jejuni RM1221 3232567 CJE_tRNA-Arg-1 tRNA CJE_tRNA-Arg-1 NC_003912.7 498441 498517 D tRNA-Arg 498441..498517 Campylobacter jejuni RM1221 3232532 CJE_tRNA-Met-1 tRNA CJE_tRNA-Met-1 NC_003912.7 609439 609514 R tRNA-Met complement(609439..609514) Campylobacter jejuni RM1221 3232556 CJE_tRNA-Gln-1 tRNA CJE_tRNA-Gln-1 NC_003912.7 609549 609623 R tRNA-Gln complement(609549..609623) Campylobacter jejuni RM1221 3232541 CJE_tRNA-Ala-3 tRNA CJE_tRNA-Ala-3 NC_003912.7 776787 776862 D tRNA-Ala 776787..776862 Campylobacter jejuni RM1221 3232530 CJE_tRNA-Ile-3 tRNA CJE_tRNA-Ile-3 NC_003912.7 776871 776947 D tRNA-Ile 776871..776947 Campylobacter jejuni RM1221 3232549 CJE_tRNA-Leu-1 tRNA CJE_tRNA-Leu-1 NC_003912.7 904254 904340 D tRNA-Leu 904254..904340 Campylobacter jejuni RM1221 3232550 CJE_tRNA-Gly-2 tRNA CJE_tRNA-Gly-2 NC_003912.7 904351 904425 D tRNA-Gly 904351..904425 Campylobacter jejuni RM1221 3232544 CJE_tRNA-Leu-2 tRNA CJE_tRNA-Leu-2 NC_003912.7 951076 951161 D tRNA-Leu 951076..951161 Campylobacter jejuni RM1221 3232551 CJE_tRNA-Asp-1 tRNA CJE_tRNA-Asp-1 NC_003912.7 956281 956357 R tRNA-Asp complement(956281..956357) Campylobacter jejuni RM1221 3232538 CJE_tRNA-Val-1 tRNA CJE_tRNA-Val-1 NC_003912.7 956409 956484 R tRNA-Val complement(956409..956484) Campylobacter jejuni RM1221 3232569 CJE_tRNA-Arg-2 tRNA CJE_tRNA-Arg-2 NC_003912.7 956491 956566 R tRNA-Arg complement(956491..956566) Campylobacter jejuni RM1221 3232533 CJE_tRNA-Lys-1 tRNA CJE_tRNA-Lys-1 NC_003912.7 956586 956661 R tRNA-Lys complement(956586..956661) Campylobacter jejuni RM1221 3232554 CJE_tRNA-Asp-2 tRNA CJE_tRNA-Asp-2 NC_003912.7 956666 956742 R tRNA-Asp complement(956666..956742) Campylobacter jejuni RM1221 3232539 CJE_tRNA-Val-2 tRNA CJE_tRNA-Val-2 NC_003912.7 956794 956869 R tRNA-Val complement(956794..956869) Campylobacter jejuni RM1221 3232570 CJE_tRNA-Lys-2 tRNA CJE_tRNA-Lys-2 NC_003912.7 956877 956952 R tRNA-Lys complement(956877..956952) Campylobacter jejuni RM1221 3232555 CJE_tRNA-Arg-3 tRNA CJE_tRNA-Arg-3 NC_003912.7 1021022 1021098 D tRNA-Arg 1021022..1021098 Campylobacter jejuni RM1221 3232534 CJE_tRNA-Asn-1 tRNA CJE_tRNA-Asn-1 NC_003912.7 1274878 1274952 R tRNA-Asn complement(1274878..1274952) Campylobacter jejuni RM1221 3232537 CJE_tRNA-Met-2 tRNA CJE_tRNA-Met-2 NC_003912.7 1335641 1335717 D tRNA-Met 1335641..1335717 Campylobacter jejuni RM1221 3232557 CJE_tRNA-Phe-1 tRNA CJE_tRNA-Phe-1 NC_003912.7 1372046 1372121 R tRNA-Phe complement(1372046..1372121) Campylobacter jejuni RM1221 3232559 CJE_tRNA-Ser-1 tRNA CJE_tRNA-Ser-1 NC_003912.7 1440461 1440550 R tRNA-Ser complement(1440461..1440550) Campylobacter jejuni RM1221 3232562 CJE_tRNA-SeC-1 tRNA CJE_tRNA-SeC-1 NC_003912.7 1570935 1571032 R tRNA-Sec complement(1570935..1571032) Campylobacter jejuni RM1221 3232561 CJE_tRNA-Gly-3 tRNA CJE_tRNA-Gly-3 NC_003912.7 1690832 1690906 D tRNA-Gly 1690832..1690906 Campylobacter jejuni RM1221 3232545 CJE_tRNA-Leu-3 tRNA CJE_tRNA-Leu-3 NC_003912.7 1690916 1691004 D tRNA-Leu 1690916..1691004 Campylobacter jejuni RM1221 3232552 CJE_tRNA-Cys-1 tRNA CJE_tRNA-Cys-1 NC_003912.7 1691023 1691096 D tRNA-Cys 1691023..1691096 Campylobacter jejuni RM1221 3232540 CJE_tRNA-Ser-2 tRNA CJE_tRNA-Ser-2 NC_003912.7 1691118 1691205 D tRNA-Ser 1691118..1691205 Campylobacter jejuni RM1221 3232563 CJE_tRNA-Leu-4 tRNA CJE_tRNA-Leu-4 NC_003912.7 1731606 1731690 R tRNA-Leu complement(1731606..1731690) Campylobacter jejuni RM1221 3232553 CJE_tRNA-Arg-4 tRNA CJE_tRNA-Arg-4 NC_003912.7 1731696 1731772 R tRNA-Arg complement(1731696..1731772) Campylobacter jejuni RM1221 3232535 CJE_tRNA-Arg-5 tRNA CJE_tRNA-Arg-5 NC_003912.7 1731787 1731863 R tRNA-Arg complement(1731787..1731863) Campylobacter jejuni RM1221 3232536 CJE_tRNA-His-1 tRNA CJE_tRNA-His-1 NC_003912.7 1731868 1731944 R tRNA-His complement(1731868..1731944) Campylobacter jejuni RM1221 3232546 CJE_tRNA-Pro-1 tRNA CJE_tRNA-Pro-1 NC_003912.7 1731969 1732046 R tRNA-Pro complement(1731969..1732046) Campylobacter jejuni RM1221 3232560 CJE_tRNA-Met-3 tRNA CJE_tRNA-Met-3 NC_003912.7 1762126 1762202 R tRNA-Met complement(1762126..1762202) Campylobacter jejuni RM1221 3232558 CJE_tRNA-Ser-3 tRNA CJE_tRNA-Ser-3 NC_003912.7 1762338 1762425 D tRNA-Ser 1762338..1762425 Campylobacter jejuni RM1221 3232564 CJE_tRNA-Ala-4 tRNA CJE_tRNA-Ala-4 NC_003912.7 1763635 1763710 D tRNA-Ala 1763635..1763710 Campylobacter jejuni RM1221 3232531 CJE_tRNA-Val-3 tRNA CJE_tRNA-Val-3 NC_003912.7 1763714 1763789 D tRNA-Val 1763714..1763789 Campylobacter jejuni RM1221 3232571 CJE_Cj16SA rRNA rrsA NC_003912.7 37396 38908 D 16S ribosomal RNA 37396..38908 Campylobacter jejuni RM1221 3232519 CJE_Cj23SA rRNA rrlA NC_003912.7 39710 42772 D 23S ribosomal RNA 39710..42772 Campylobacter jejuni RM1221 3232522 CJE_r01 rRNA CJE_r01 NC_003912.7 43017 43136 D 5S ribosomal RNA 43017..43136 Campylobacter jejuni RM1221 5228718 CJE_Cj16SB rRNA rrsB NC_003912.7 432211 433723 D 16S ribosomal RNA 432211..433723 Campylobacter jejuni RM1221 3232520 CJE_Cj23SB rRNA rrlB NC_003912.7 434525 437587 D 23S ribosomal RNA 434525..437587 Campylobacter jejuni RM1221 3232523 CJE_r02 rRNA CJE_r02 NC_003912.7 437832 437951 D 5S ribosomal RNA 437832..437951 Campylobacter jejuni RM1221 5228716 CJE_Cj16SC rRNA rrsC NC_003912.7 775170 776682 D 16S ribosomal RNA 775170..776682 Campylobacter jejuni RM1221 3232521 CJE_Cj23SC rRNA rrlC NC_003912.7 777484 780546 D 23S ribosomal RNA 777484..780546 Campylobacter jejuni RM1221 3232524 CJE_r03 rRNA CJE_r03 NC_003912.7 780791 780910 D 5S ribosomal RNA 780791..780910 Campylobacter jejuni RM1221 5228717