-- dump date 20140619_021731 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001397274.1 153951168 5388783 1..1323 1 NC_009707.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1323 dnaA 5388783 dnaA Campylobacter jejuni subsp. doylei 269.97 chromosomal replication initiation protein YP_001397274.1 1 D 360109 CDS YP_001397275.1 153952198 5389605 1483..2550 1 NC_009707.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2550 dnaN 5389605 dnaN Campylobacter jejuni subsp. doylei 269.97 DNA polymerase III subunit beta YP_001397275.1 1483 D 360109 CDS YP_001397276.1 153951349 5389220 2579..4888 1 NC_009707.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4888 gyrB 5389220 gyrB Campylobacter jejuni subsp. doylei 269.97 DNA gyrase subunit B YP_001397276.1 2579 D 360109 CDS YP_001397277.1 153952107 5389646 complement(4936..6582) 1 NC_009707.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 6582 actP 5389646 actP Campylobacter jejuni subsp. doylei 269.97 acetate permease YP_001397277.1 4936 R 360109 CDS YP_001397278.1 153951210 5389067 complement(6579..6938) 1 NC_009707.1 identified by match to protein family HMM PF04341; hypothetical protein 6938 5389067 JJD26997_0005 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397278.1 6579 R 360109 CDS YP_001397279.1 153952179 5389797 7169..8470 1 NC_009707.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM PF06808; Na+/H+ antiporter family protein 8470 5389797 JJD26997_0006 Campylobacter jejuni subsp. doylei 269.97 Na+/H+ antiporter family protein YP_001397279.1 7169 D 360109 CDS YP_001397280.1 153951980 5390196 8605..13092 1 NC_009707.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; glutamate synthase, large subunit 13092 5390196 JJD26997_0007 Campylobacter jejuni subsp. doylei 269.97 glutamate synthase, large subunit YP_001397280.1 8605 D 360109 CDS YP_001397281.1 153951216 5389927 13114..14805 1 NC_009707.1 identified by match to protein family HMM PF03235; match to protein family HMM PF07510; hypothetical protein 14805 5389927 JJD26997_0008 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397281.1 13114 D 360109 CDS YP_001397282.1 153951673 5389060 14822..16267 1 NC_009707.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 16267 gltD 5389060 gltD Campylobacter jejuni subsp. doylei 269.97 glutamate synthase subunit beta YP_001397282.1 14822 D 360109 CDS YP_001397283.1 153951148 5390315 complement(16268..16843) 1 NC_009707.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 16843 rnhB 5390315 rnhB Campylobacter jejuni subsp. doylei 269.97 ribonuclease HII YP_001397283.1 16268 R 360109 CDS YP_001397284.1 153951474 5389204 complement(16876..17115) 1 NC_009707.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; competence protein ComEA 17115 comEA 5389204 comEA Campylobacter jejuni subsp. doylei 269.97 competence protein ComEA YP_001397284.1 16876 R 360109 CDS YP_001397285.1 153952482 5388582 complement(17181..17732) 1 NC_009707.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915; match to protein family HMM PF06397; match to protein family HMM TIGR00319; rubrerythrin 17732 rbr 5388582 rbr Campylobacter jejuni subsp. doylei 269.97 rubrerythrin YP_001397285.1 17181 R 360109 CDS YP_001397286.1 153952083 5390007 17988..19664 1 NC_009707.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 19664 ilvD 5390007 ilvD Campylobacter jejuni subsp. doylei 269.97 dihydroxy-acid dehydratase YP_001397286.1 17988 D 360109 CDS YP_001397287.1 153951860 5388596 complement(20162..21388) 1 NC_009707.1 hypothetical protein 21388 5388596 JJD26997_0015 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397287.1 20162 R 360109 CDS YP_001397288.1 153950993 5389572 21465..22139 1 NC_009707.1 identified by match to protein family HMM PF02568; match to protein family HMM PF06508; match to protein family HMM TIGR00364; exsB protein 22139 5389572 JJD26997_0016 Campylobacter jejuni subsp. doylei 269.97 exsB protein YP_001397288.1 21465 D 360109 CDS YP_001397289.1 153950977 5388782 complement(22160..23686) 1 NC_009707.1 identified by match to protein family HMM PF02600; DsbB family disulfide bond formation protein 23686 5388782 JJD26997_0017 Campylobacter jejuni subsp. doylei 269.97 DsbB family disulfide bond formation protein YP_001397289.1 22160 R 360109 CDS YP_001397290.1 153951761 5389109 complement(23698..23865) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 23865 5389109 JJD26997_0018 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397290.1 23698 R 360109 CDS YP_001397291.1 153951098 5390228 complement(26450..27316) 1 NC_009707.1 identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase family protein 27316 5390228 JJD26997_0023 Campylobacter jejuni subsp. doylei 269.97 fumarylacetoacetate hydrolase family protein YP_001397291.1 26450 R 360109 CDS YP_001397292.1 153952071 5389264 complement(27427..28329) 1 NC_009707.1 identified by match to protein family HMM PF00849; RNA pseudouridine synthase family protein 28329 5389264 JJD26997_0024 Campylobacter jejuni subsp. doylei 269.97 RNA pseudouridine synthase family protein YP_001397292.1 27427 R 360109 CDS YP_001397293.1 153951291 5389300 28407..29735 1 NC_009707.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 29735 purB-1 5389300 purB-1 Campylobacter jejuni subsp. doylei 269.97 adenylosuccinate lyase YP_001397293.1 28407 D 360109 CDS YP_001397294.1 153952334 5390320 29751..32120 1 NC_009707.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 32120 nrdA 5390320 nrdA Campylobacter jejuni subsp. doylei 269.97 ribonucleotide-diphosphate reductase subunit alpha YP_001397294.1 29751 D 360109 CDS YP_001397295.1 153951390 5389286 complement(32159..33544) 1 NC_009707.1 identified by match to protein family HMM PF00375; sodium/dicarboxylate symporter 33544 5389286 JJD26997_0027 Campylobacter jejuni subsp. doylei 269.97 sodium/dicarboxylate symporter YP_001397295.1 32159 R 360109 CDS YP_001397296.1 153952167 5390462 complement(33664..34287) 1 NC_009707.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 34287 thyX 5390462 thyX Campylobacter jejuni subsp. doylei 269.97 FAD-dependent thymidylate synthase YP_001397296.1 33664 R 360109 CDS YP_001397297.1 153951536 5390387 34406..36037 1 NC_009707.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 36037 pyrG 5390387 pyrG Campylobacter jejuni subsp. doylei 269.97 CTP synthetase YP_001397297.1 34406 D 360109 CDS YP_001397298.1 153952383 5389146 36024..37595 1 NC_009707.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 37595 recJ 5389146 recJ Campylobacter jejuni subsp. doylei 269.97 single-stranded-DNA-specific exonuclease RecJ YP_001397298.1 36024 D 360109 CDS YP_001397299.1 153951810 5389023 37681..38727 1 NC_009707.1 identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520; L-asparaginase 38727 ansA 5389023 ansA Campylobacter jejuni subsp. doylei 269.97 L-asparaginase YP_001397299.1 37681 D 360109 CDS YP_001397300.1 153951062 5389407 41479..42081 1 NC_009707.1 identified by match to protein family HMM PF01810; threonine efflux protein 42081 rhtC 5389407 rhtC Campylobacter jejuni subsp. doylei 269.97 threonine efflux protein YP_001397300.1 41479 D 360109 CDS YP_001397301.1 153952296 5388868 43048..43188 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 43188 5388868 JJD26997_0039 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397301.1 43048 D 360109 CDS YP_001397302.1 153951153 5390397 complement(47433..49103) 1 NC_009707.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066; gamma-glutamyltransferase 49103 ggt 5390397 ggt Campylobacter jejuni subsp. doylei 269.97 gamma-glutamyltransferase YP_001397302.1 47433 R 360109 CDS YP_001397303.1 153951784 5389203 49333..53091 1 NC_009707.1 type II restriction-modification enzyme 53091 5389203 JJD26997_0043 Campylobacter jejuni subsp. doylei 269.97 type II restriction-modification enzyme YP_001397303.1 49333 D 360109 CDS YP_001397304.1 153951314 5388987 53802..54632 1 NC_009707.1 identified by match to protein family HMM PF06421; GTP-binding protein LepA 54632 5388987 JJD26997_0046 Campylobacter jejuni subsp. doylei 269.97 GTP-binding protein LepA YP_001397304.1 53802 D 360109 CDS YP_001397305.1 153952211 5389153 complement(54598..55965) 1 NC_009707.1 identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785; CitT protein 55965 5389153 JJD26997_0045 Campylobacter jejuni subsp. doylei 269.97 CitT protein YP_001397305.1 54598 R 360109 CDS YP_001397306.1 153951558 5389187 complement(56076..57065) 1 NC_009707.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 57065 mraY 5389187 mraY Campylobacter jejuni subsp. doylei 269.97 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001397306.1 56076 R 360109 CDS YP_001397307.1 153951938 5388593 complement(57271..58032) 1 NC_009707.1 identified by match to protein family HMM PF04402; hypothetical protein 58032 5388593 JJD26997_0048 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397307.1 57271 R 360109 CDS YP_001397308.1 153952213 5389661 58791..60140 1 NC_009707.1 hypothetical protein 60140 5389661 JJD26997_0050 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397308.1 58791 D 360109 CDS YP_001397309.1 153951027 5390418 complement(60164..61207) 1 NC_009707.1 identified by match to protein family HMM PF00034; cytochrome c family protein 61207 5390418 JJD26997_0051 Campylobacter jejuni subsp. doylei 269.97 cytochrome c family protein YP_001397309.1 60164 R 360109 CDS YP_001397310.1 153952411 5388738 complement(61385..62032) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 62032 5388738 JJD26997_0052 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397310.1 61385 R 360109 CDS YP_001397311.1 153951246 5389568 complement(62032..63840) 1 NC_009707.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 63840 typA 5389568 typA Campylobacter jejuni subsp. doylei 269.97 GTP-binding protein TypA YP_001397311.1 62032 R 360109 CDS YP_001397312.1 153951897 5389168 63805..63990 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 63990 5389168 JJD26997_0054 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397312.1 63805 D 360109 CDS YP_001397313.1 153951142 5390413 64317..66083 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 66083 5390413 JJD26997_0056 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397313.1 64317 D 360109 CDS YP_001397314.1 153952103 5389462 66142..67005 1 NC_009707.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 67005 flgD 5389462 flgD Campylobacter jejuni subsp. doylei 269.97 flagellar basal body rod modification protein YP_001397314.1 66142 D 360109 CDS YP_001397315.1 153951334 5390476 67009..68646 1 NC_009707.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559; flagellar hook protein 68646 flgE-1 5390476 flgE-1 Campylobacter jejuni subsp. doylei 269.97 flagellar hook protein YP_001397315.1 67009 D 360109 CDS YP_001397316.1 153951498 5390012 complement(68650..70518) 1 NC_009707.1 hypothetical protein 70518 5390012 JJD26997_0059 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397316.1 68650 R 360109 CDS YP_001397317.1 153951834 5388690 complement(72256..73272) 1 NC_009707.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 73272 mnmA 5388690 mnmA Campylobacter jejuni subsp. doylei 269.97 tRNA-specific 2-thiouridylase MnmA YP_001397317.1 72256 R 360109 CDS YP_001397318.1 153951989 5389376 complement(73269..73877) 1 NC_009707.1 identified by match to protein family HMM PF03641; lysine decarboxylase family protein 73877 5389376 JJD26997_0063 Campylobacter jejuni subsp. doylei 269.97 lysine decarboxylase family protein YP_001397318.1 73269 R 360109 CDS YP_001397319.1 153952498 5389022 complement(73996..74733) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 74733 5389022 JJD26997_0064 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397319.1 73996 R 360109 CDS YP_001397320.1 153952375 5390401 complement(75063..75206) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 75206 5390401 JJD26997_0065 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397320.1 75063 R 360109 CDS YP_001397321.1 153951542 5389053 complement(75558..75737) 1 NC_009707.1 hypothetical protein 75737 5389053 JJD26997_0066 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397321.1 75558 R 360109 CDS YP_001397322.1 153951293 5388658 76032..76886 1 NC_009707.1 HmcD domain-containing protein 76886 5388658 JJD26997_0067 Campylobacter jejuni subsp. doylei 269.97 HmcD domain-containing protein YP_001397322.1 76032 D 360109 CDS YP_001397323.1 153952073 5390322 76871..77470 1 NC_009707.1 identified by match to protein family HMM PF03412; peptidase family protein 77470 5390322 JJD26997_0068 Campylobacter jejuni subsp. doylei 269.97 peptidase family protein YP_001397323.1 76871 D 360109 CDS YP_001397324.1 153951920 5388852 complement(77519..78340) 1 NC_009707.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliY 78340 fliY 5388852 fliY Campylobacter jejuni subsp. doylei 269.97 flagellar motor switch protein FliY YP_001397324.1 77519 R 360109 CDS YP_001397325.1 153951200 5390310 complement(78358..79437) 1 NC_009707.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 79437 fliM 5390310 fliM Campylobacter jejuni subsp. doylei 269.97 flagellar motor switch protein FliM YP_001397325.1 78358 R 360109 CDS YP_001397326.1 153952569 5388894 complement(79437..80153) 1 NC_009707.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 80153 fliA 5388894 fliA Campylobacter jejuni subsp. doylei 269.97 flagellar biosynthesis sigma factor YP_001397326.1 79437 R 360109 CDS YP_001397327.1 153950944 5390030 complement(80110..80466) 1 NC_009707.1 hypothetical protein 80466 5390030 JJD26997_0072 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397327.1 80110 R 360109 CDS YP_001397328.1 153951589 5389530 complement(80485..81351) 1 NC_009707.1 identified by match to protein family HMM PF01656; ParaA family ATPase 81351 5389530 JJD26997_0073 Campylobacter jejuni subsp. doylei 269.97 ParaA family ATPase YP_001397328.1 80485 R 360109 CDS YP_001397329.1 153952395 5390152 complement(81351..82796) 1 NC_009707.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 82796 flhF 5390152 flhF Campylobacter jejuni subsp. doylei 269.97 flagellar biosynthesis regulator FlhF YP_001397329.1 81351 R 360109 CDS YP_001397330.1 153951801 5390004 complement(82807..83280) 1 NC_009707.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 83280 folK 5390004 folK Campylobacter jejuni subsp. doylei 269.97 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001397330.1 82807 R 360109 CDS YP_001397331.1 153952575 5389911 complement(83283..83762) 1 NC_009707.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 83762 aroQ 5389911 aroQ Campylobacter jejuni subsp. doylei 269.97 3-dehydroquinate dehydratase YP_001397331.1 83283 R 360109 CDS YP_001397332.1 153952082 5389026 83855..85084 1 NC_009707.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; chlorohydrolase 85084 5389026 JJD26997_0077 Campylobacter jejuni subsp. doylei 269.97 chlorohydrolase YP_001397332.1 83855 D 360109 CDS YP_001397333.1 153951329 5388643 85072..85968 1 NC_009707.1 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type 85968 sppA 5388643 sppA Campylobacter jejuni subsp. doylei 269.97 signal peptide peptidase SppA, 36K type YP_001397333.1 85072 D 360109 CDS YP_001397334.1 153951109 5389773 complement(86846..87004) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 87004 5389773 JJD26997_0081 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397334.1 86846 R 360109 CDS YP_001397335.1 153951058 5389046 complement(87775..88431) 1 NC_009707.1 identified by match to protein family HMM PF02589; hypothetical protein 88431 5389046 JJD26997_0084 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397335.1 87775 R 360109 CDS YP_001397336.1 153951992 5389899 complement(88424..89863) 1 NC_009707.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02589; match to protein family HMM TIGR00273; iron-sulfur cluster binding protein 89863 5389899 JJD26997_0085 Campylobacter jejuni subsp. doylei 269.97 iron-sulfur cluster binding protein YP_001397336.1 88424 R 360109 CDS YP_001397337.1 153951675 5390564 complement(89860..90597) 1 NC_009707.1 identified by match to protein family HMM PF02754; hypothetical protein 90597 5390564 JJD26997_0086 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397337.1 89860 R 360109 CDS YP_001397338.1 153952662 5389150 complement(90721..92403) 1 NC_009707.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 92403 lctP 5389150 lctP Campylobacter jejuni subsp. doylei 269.97 L-lactate permease YP_001397338.1 90721 R 360109 CDS YP_001397339.1 153951159 5389582 93169..93438 1 NC_009707.1 hypothetical protein 93438 5389582 JJD26997_0089 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397339.1 93169 D 360109 CDS YP_001397340.1 153951686 5390602 93439..95001 1 NC_009707.1 identified by match to protein family HMM PF01654; cytochrome d ubiquinol oxidase, subunit I 95001 cydA 5390602 cydA Campylobacter jejuni subsp. doylei 269.97 cytochrome d ubiquinol oxidase, subunit I YP_001397340.1 93439 D 360109 CDS YP_001397341.1 153950972 5389621 95001..96125 1 NC_009707.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase, subunit II 96125 cydB 5389621 cydB Campylobacter jejuni subsp. doylei 269.97 cytochrome d ubiquinol oxidase, subunit II YP_001397341.1 95001 D 360109 CDS YP_001397342.1 153951898 5390044 complement(96319..97014) 1 NC_009707.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; putative aspartate racemase 97014 5390044 JJD26997_0092 Campylobacter jejuni subsp. doylei 269.97 putative aspartate racemase YP_001397342.1 96319 R 360109 CDS YP_001397343.1 153951537 5390255 complement(97130..97825) 1 NC_009707.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 97825 ung 5390255 ung Campylobacter jejuni subsp. doylei 269.97 uracil-DNA glycosylase YP_001397343.1 97130 R 360109 CDS YP_001397344.1 153952003 5388702 98099..99505 1 NC_009707.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 99505 aspA 5388702 aspA Campylobacter jejuni subsp. doylei 269.97 aspartate ammonia-lyase YP_001397344.1 98099 D 360109 CDS YP_001397345.1 153951706 5388700 99531..100859 1 NC_009707.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 100859 dcuA 5388700 dcuA Campylobacter jejuni subsp. doylei 269.97 anaerobic C4-dicarboxylate transporter YP_001397345.1 99531 D 360109 CDS YP_001397346.1 153952518 5389956 101520..104627 1 NC_009707.1 identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; autotransporter beta-domain-containing protein 104627 5389956 JJD26997_0096 Campylobacter jejuni subsp. doylei 269.97 autotransporter beta-domain-containing protein YP_001397346.1 101520 D 360109 CDS YP_001397347.1 153951573 5388590 104880..105815 1 NC_009707.1 hypothetical protein 105815 5388590 JJD26997_0097 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397347.1 104880 D 360109 CDS YP_001397348.1 153952371 5390248 105974..106282 1 NC_009707.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 106282 rplU 5390248 rplU Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L21 YP_001397348.1 105974 D 360109 CDS YP_001397349.1 153951563 5390273 106293..106547 1 NC_009707.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 106547 rpmA 5390273 rpmA Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L27 YP_001397349.1 106293 D 360109 CDS YP_001397350.1 153952548 5388929 106654..107691 1 NC_009707.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 107691 obgE 5388929 obgE Campylobacter jejuni subsp. doylei 269.97 GTPase ObgE YP_001397350.1 106654 D 360109 CDS YP_001397351.1 153951144 5390138 complement(108516..108644) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 108644 5390138 JJD26997_0103 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397351.1 108516 R 360109 CDS YP_001397352.1 153950956 5389292 108654..109571 1 NC_009707.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 109571 fmt 5389292 fmt Campylobacter jejuni subsp. doylei 269.97 methionyl-tRNA formyltransferase YP_001397352.1 108654 D 360109 CDS YP_001397353.1 153951936 5389365 109534..110187 1 NC_009707.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 110187 5389365 JJD26997_0106 Campylobacter jejuni subsp. doylei 269.97 biotin--protein ligase YP_001397353.1 109534 D 360109 CDS YP_001397354.1 153952401 5389307 110184..110969 1 NC_009707.1 identified by match to protein family HMM PF01656; ParA family chromosome partitioning ATPase 110969 5389307 JJD26997_0107 Campylobacter jejuni subsp. doylei 269.97 ParA family chromosome partitioning ATPase YP_001397354.1 110184 D 360109 CDS YP_001397355.1 153952129 5390037 110975..111811 1 NC_009707.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family chromosome partitioning protein 111811 5390037 JJD26997_0108 Campylobacter jejuni subsp. doylei 269.97 ParB family chromosome partitioning protein YP_001397355.1 110975 D 360109 CDS YP_001397356.1 153951555 5389251 111875..112300 1 NC_009707.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' 112300 5389251 JJD26997_0109 Campylobacter jejuni subsp. doylei 269.97 F0F1 ATP synthase subunit B' YP_001397356.1 111875 D 360109 CDS YP_001397357.1 153952313 5390325 112311..112823 1 NC_009707.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 112823 5390325 JJD26997_0110 Campylobacter jejuni subsp. doylei 269.97 F0F1 ATP synthase subunit B YP_001397357.1 112311 D 360109 CDS YP_001397358.1 153951608 5390027 112826..113347 1 NC_009707.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 113347 atpH 5390027 atpH Campylobacter jejuni subsp. doylei 269.97 F0F1 ATP synthase subunit delta YP_001397358.1 112826 D 360109 CDS YP_001397359.1 153952146 5389855 113361..114866 1 NC_009707.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 114866 atpA 5389855 atpA Campylobacter jejuni subsp. doylei 269.97 F0F1 ATP synthase subunit alpha YP_001397359.1 113361 D 360109 CDS YP_001397360.1 153952196 5389518 114875..115759 1 NC_009707.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 115759 atpG 5389518 atpG Campylobacter jejuni subsp. doylei 269.97 F0F1 ATP synthase subunit gamma YP_001397360.1 114875 D 360109 CDS YP_001397361.1 153951038 5389218 115784..117238 1 NC_009707.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 117238 atpD 5389218 atpD Campylobacter jejuni subsp. doylei 269.97 F0F1 ATP synthase subunit beta YP_001397361.1 115784 D 360109 CDS YP_001397362.1 153951408 5389733 117238..117627 1 NC_009707.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 117627 atpC 5389733 atpC Campylobacter jejuni subsp. doylei 269.97 F0F1 ATP synthase subunit epsilon YP_001397362.1 117238 D 360109 CDS YP_001397363.1 153952561 5389099 117627..118181 1 NC_009707.1 identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 118181 5389099 JJD26997_0116 Campylobacter jejuni subsp. doylei 269.97 MotA/TolQ/ExbB proton channel family protein YP_001397363.1 117627 D 360109 CDS YP_001397364.1 153951220 5388772 118190..118579 1 NC_009707.1 identified by match to protein family HMM PF02472; match to protein family HMM TIGR02801; TonB system transport protein ExbD 118579 5388772 JJD26997_0117 Campylobacter jejuni subsp. doylei 269.97 TonB system transport protein ExbD YP_001397364.1 118190 D 360109 CDS YP_001397365.1 153952317 5390158 118582..119361 1 NC_009707.1 TonB domain-containing protein 119361 5390158 JJD26997_0118 Campylobacter jejuni subsp. doylei 269.97 TonB domain-containing protein YP_001397365.1 118582 D 360109 CDS YP_001397366.1 153951205 5390319 119371..120579 1 NC_009707.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 120579 tolB 5390319 tolB Campylobacter jejuni subsp. doylei 269.97 translocation protein TolB YP_001397366.1 119371 D 360109 CDS YP_001397367.1 153952154 5389682 120656..121153 1 NC_009707.1 identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802; peptidoglycan-associated lipoprotein Omp18 121153 5389682 JJD26997_0120 Campylobacter jejuni subsp. doylei 269.97 peptidoglycan-associated lipoprotein Omp18 YP_001397367.1 120656 D 360109 CDS YP_001397368.1 153950982 5390354 121157..122104 1 NC_009707.1 hypothetical protein 122104 5390354 JJD26997_0121 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397368.1 121157 D 360109 CDS YP_001397369.1 153951916 5388974 122119..122673 1 NC_009707.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 122673 slyD 5388974 slyD Campylobacter jejuni subsp. doylei 269.97 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD YP_001397369.1 122119 D 360109 CDS YP_001397370.1 153952364 5389825 122673..123593 1 NC_009707.1 malonyl CoA-acyl carrier protein transacylase 123593 fabD 5389825 fabD Campylobacter jejuni subsp. doylei 269.97 malonyl CoA-acyl carrier protein transacylase YP_001397370.1 122673 D 360109 CDS YP_001397371.1 153952345 5388855 123593..124279 1 NC_009707.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 124279 mtnA 5388855 mtnA Campylobacter jejuni subsp. doylei 269.97 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_001397371.1 123593 D 360109 CDS YP_001397372.1 153951034 5389775 124276..125037 1 NC_009707.1 identified by match to protein family HMM PF01171; PP-loop family protein 125037 5389775 JJD26997_0125 Campylobacter jejuni subsp. doylei 269.97 PP-loop family protein YP_001397372.1 124276 D 360109 CDS YP_001397373.1 153951597 5388736 125034..125555 1 NC_009707.1 putative pyrazinamidase/nicotinamidase 125555 5388736 JJD26997_0126 Campylobacter jejuni subsp. doylei 269.97 putative pyrazinamidase/nicotinamidase YP_001397373.1 125034 D 360109 CDS YP_001397374.1 153951244 5390502 125555..126169 1 NC_009707.1 putative recombination protein RecO 126169 5390502 JJD26997_0127 Campylobacter jejuni subsp. doylei 269.97 putative recombination protein RecO YP_001397374.1 125555 D 360109 CDS YP_001397375.1 153952235 5390150 126166..126573 1 NC_009707.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; putative metalloprotease 126573 5390150 JJD26997_0128 Campylobacter jejuni subsp. doylei 269.97 putative metalloprotease YP_001397375.1 126166 D 360109 CDS YP_001397376.1 153951863 5389758 complement(126701..126814) 1 NC_009707.1 peptidase family protein 126814 5389758 JJD26997_0129 Campylobacter jejuni subsp. doylei 269.97 peptidase family protein YP_001397376.1 126701 R 360109 CDS YP_001397377.1 153951370 5389669 127677..130250 1 NC_009707.1 identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; putative lipoprotein 130250 5389669 JJD26997_0130 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001397377.1 127677 D 360109 CDS YP_001397378.1 153952504 5390394 complement(130436..130591) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 130591 5390394 JJD26997_0131 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397378.1 130436 R 360109 CDS YP_001397379.1 153951130 5389738 complement(130619..131086) 1 NC_009707.1 hypothetical protein 131086 5389738 JJD26997_0132 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397379.1 130619 R 360109 CDS YP_001397380.1 153951789 5389846 complement(131136..131393) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 131393 5389846 JJD26997_0133 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397380.1 131136 R 360109 CDS YP_001397381.1 153952459 5389939 complement(131405..131584) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 131584 5389939 JJD26997_0134 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397381.1 131405 R 360109 CDS YP_001397382.1 153952282 5389739 complement(131775..132701) 1 NC_009707.1 identified by match to protein family HMM PF01207; tRNA-dihydrouridine synthase B 132701 dusB 5389739 dusB Campylobacter jejuni subsp. doylei 269.97 tRNA-dihydrouridine synthase B YP_001397382.1 131775 R 360109 CDS YP_001397383.1 153951310 5390450 complement(132698..133684) 1 NC_009707.1 hypothetical protein 133684 5390450 JJD26997_0137 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397383.1 132698 R 360109 CDS YP_001397384.1 153952045 5390020 complement(133674..134036) 1 NC_009707.1 identified by match to protein family HMM PF01258; putative dnaK suppressor protein 134036 5390020 JJD26997_0138 Campylobacter jejuni subsp. doylei 269.97 putative dnaK suppressor protein YP_001397384.1 133674 R 360109 CDS YP_001397385.1 153952425 5390448 complement(134048..134497) 1 NC_009707.1 identified by match to protein family HMM PF02590; hypothetical protein 134497 5390448 JJD26997_0139 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397385.1 134048 R 360109 CDS YP_001397386.1 153951227 5389821 complement(134499..135341) 1 NC_009707.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 135341 accD 5389821 accD Campylobacter jejuni subsp. doylei 269.97 acetyl-CoA carboxylase subunit beta YP_001397386.1 134499 R 360109 CDS YP_001397387.1 153952203 5389189 complement(135350..136072) 1 NC_009707.1 identified by match to protein family HMM PF00459; inositol monophosphatase family protein 136072 5389189 JJD26997_0141 Campylobacter jejuni subsp. doylei 269.97 inositol monophosphatase family protein YP_001397387.1 135350 R 360109 CDS YP_001397388.1 153951002 5390167 complement(136072..138291) 1 NC_009707.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303; OMP85 family outer membrane protein 138291 5390167 JJD26997_0142 Campylobacter jejuni subsp. doylei 269.97 OMP85 family outer membrane protein YP_001397388.1 136072 R 360109 CDS YP_001397389.1 153950961 5388966 138367..139194 1 NC_009707.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 139194 tyrA 5388966 tyrA Campylobacter jejuni subsp. doylei 269.97 prephenate dehydrogenase YP_001397389.1 138367 D 360109 CDS YP_001397390.1 153951237 5389011 139275..140648 1 NC_009707.1 identified by match to protein family HMM PF01551; M24/M37 family peptidase 140648 5389011 JJD26997_0144 Campylobacter jejuni subsp. doylei 269.97 M24/M37 family peptidase YP_001397390.1 139275 D 360109 CDS YP_001397391.1 153951460 5388744 140648..141532 1 NC_009707.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 141532 lpxC 5388744 lpxC Campylobacter jejuni subsp. doylei 269.97 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_001397391.1 140648 D 360109 CDS YP_001397392.1 153952600 5390181 141571..141972 1 NC_009707.1 hypothetical protein 141972 5390181 JJD26997_0146 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397392.1 141571 D 360109 CDS YP_001397393.1 153951476 5389706 141981..142859 1 NC_009707.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 142859 thrB 5389706 thrB Campylobacter jejuni subsp. doylei 269.97 homoserine kinase YP_001397393.1 141981 D 360109 CDS YP_001397394.1 153952023 5389317 142884..143141 1 NC_009707.1 hypothetical protein 143141 5389317 JJD26997_0148 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397394.1 142884 D 360109 CDS YP_001397395.1 153951208 5389113 143128..145692 1 NC_009707.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 145692 infB 5389113 infB Campylobacter jejuni subsp. doylei 269.97 translation initiation factor IF-2 YP_001397395.1 143128 D 360109 CDS YP_001397396.1 153951532 5390436 145689..146051 1 NC_009707.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 146051 rbfA 5390436 rbfA Campylobacter jejuni subsp. doylei 269.97 ribosome-binding factor A YP_001397396.1 145689 D 360109 CDS YP_001397397.1 153952308 5389062 146041..146463 1 NC_009707.1 identified by match to protein family HMM PF02576; hypothetical protein 146463 5389062 JJD26997_0151 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397397.1 146041 D 360109 CDS YP_001397398.1 153951772 5388884 146467..148263 1 NC_009707.1 identified by match to protein family HMM PF07728; putative McrBC restriction endonuclease system, McrB subunit 148263 5388884 JJD26997_0152 Campylobacter jejuni subsp. doylei 269.97 putative McrBC restriction endonuclease system, McrB subunit YP_001397398.1 146467 D 360109 CDS YP_001397399.1 153951881 5388648 148263..149600 1 NC_009707.1 hypothetical protein 149600 5388648 JJD26997_0154 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397399.1 148263 D 360109 CDS YP_001397400.1 153952540 5390459 complement(149589..150392) 1 NC_009707.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032; cation ABC transporter permease 150392 5390459 JJD26997_0153 Campylobacter jejuni subsp. doylei 269.97 cation ABC transporter permease YP_001397400.1 149589 R 360109 CDS YP_001397401.1 153951358 5389523 complement(150385..151239) 1 NC_009707.1 identified by match to protein family HMM PF00005; cation ABC transporter ATP-binding protein 151239 5389523 JJD26997_0155 Campylobacter jejuni subsp. doylei 269.97 cation ABC transporter ATP-binding protein YP_001397401.1 150385 R 360109 CDS YP_001397402.1 153951883 5389010 complement(151252..152127) 1 NC_009707.1 identified by match to protein family HMM PF01297; cation ABC transporter periplasmic cation-binding protein 152127 5389010 JJD26997_0156 Campylobacter jejuni subsp. doylei 269.97 cation ABC transporter periplasmic cation-binding protein YP_001397402.1 151252 R 360109 CDS YP_001397403.1 153952354 5389198 154434..156215 1 NC_009707.1 identified by match to protein family HMM PF05787; match to protein family HMM TIGR01409; hypothetical protein 156215 5389198 JJD26997_0160 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397403.1 154434 D 360109 CDS YP_001397404.1 153951779 5388877 complement(156253..157191) 1 NC_009707.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 157191 trxB 5388877 trxB Campylobacter jejuni subsp. doylei 269.97 thioredoxin-disulfide reductase YP_001397404.1 156253 R 360109 CDS YP_001397405.1 153951052 5389440 complement(157325..157639) 1 NC_009707.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 157639 trx 5389440 trx Campylobacter jejuni subsp. doylei 269.97 thioredoxin YP_001397405.1 157325 R 360109 CDS YP_001397406.1 153951802 5388612 complement(157696..158034) 1 NC_009707.1 identified by match to protein family HMM PF02021; hypothetical protein 158034 5388612 JJD26997_0163 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397406.1 157696 R 360109 CDS YP_001397407.1 153951904 5389702 complement(158034..159281) 1 NC_009707.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 159281 hom 5389702 hom Campylobacter jejuni subsp. doylei 269.97 homoserine dehydrogenase YP_001397407.1 158034 R 360109 CDS YP_001397408.1 153952461 5390607 complement(159285..160487) 1 NC_009707.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 160487 5390607 JJD26997_0165 Campylobacter jejuni subsp. doylei 269.97 aspartate aminotransferase YP_001397408.1 159285 R 360109 CDS YP_001397409.1 153951240 5389268 complement(160497..161303) 1 NC_009707.1 hypothetical protein 161303 5389268 JJD26997_0166 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397409.1 160497 R 360109 CDS YP_001397410.1 153951538 5388999 complement(161297..162235) 1 NC_009707.1 hypothetical protein 162235 5388999 JJD26997_0167 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397410.1 161297 R 360109 CDS YP_001397411.1 153951021 5388703 complement(162228..162911) 1 NC_009707.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase 162911 5388703 JJD26997_0168 Campylobacter jejuni subsp. doylei 269.97 RNA methyltransferase YP_001397411.1 162228 R 360109 CDS YP_001397412.1 153952242 5389790 complement(162925..163749) 1 NC_009707.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase family protein 163749 5389790 JJD26997_0169 Campylobacter jejuni subsp. doylei 269.97 tetrapyrrole methylase family protein YP_001397412.1 162925 R 360109 CDS YP_001397413.1 153951925 5389832 complement(163755..163952) 1 NC_009707.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 163952 rpmE 5389832 rpmE Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L31 YP_001397413.1 163755 R 360109 CDS YP_001397414.1 153951044 5389783 complement(164031..164687) 1 NC_009707.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 164687 5389783 JJD26997_0171 Campylobacter jejuni subsp. doylei 269.97 16S ribosomal RNA methyltransferase RsmE YP_001397414.1 164031 R 360109 CDS YP_001397415.1 153952599 5389552 complement(164689..165096) 1 NC_009707.1 hypothetical protein 165096 5389552 JJD26997_0172 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397415.1 164689 R 360109 CDS YP_001397416.1 153951690 5389705 complement(165096..165521) 1 NC_009707.1 cytochrome c family protein 165521 5389705 JJD26997_0173 Campylobacter jejuni subsp. doylei 269.97 cytochrome c family protein YP_001397416.1 165096 R 360109 CDS YP_001397417.1 153952089 5390488 complement(165521..166102) 1 NC_009707.1 identified by match to protein family HMM TIGR03367; 6-pyruvoyl tetrahydrobiopterin synthase 166102 5390488 JJD26997_0174 Campylobacter jejuni subsp. doylei 269.97 6-pyruvoyl tetrahydrobiopterin synthase YP_001397417.1 165521 R 360109 CDS YP_001397418.1 153951290 5388790 complement(166099..166842) 1 NC_009707.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 166842 5388790 JJD26997_0175 Campylobacter jejuni subsp. doylei 269.97 radical SAM domain-containing protein YP_001397418.1 166099 R 360109 CDS YP_001397419.1 153952032 5388983 complement(166845..167807) 1 NC_009707.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 167807 moaA 5388983 moaA Campylobacter jejuni subsp. doylei 269.97 molybdenum cofactor biosynthesis protein A YP_001397419.1 166845 R 360109 CDS YP_001397420.1 153951259 5388934 complement(167820..168335) 1 NC_009707.1 hypothetical protein 168335 5388934 JJD26997_0177 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397420.1 167820 R 360109 CDS YP_001397421.1 153951822 5388968 complement(168332..168532) 1 NC_009707.1 hypothetical protein 168532 5388968 JJD26997_0178 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397421.1 168332 R 360109 CDS YP_001397422.1 153951107 5389584 complement(168820..169704) 1 NC_009707.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 169704 ubiA 5389584 ubiA Campylobacter jejuni subsp. doylei 269.97 prenyltransferase YP_001397422.1 168820 R 360109 CDS YP_001397423.1 153951773 5390091 169775..170644 1 NC_009707.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 170644 miaA 5390091 miaA Campylobacter jejuni subsp. doylei 269.97 tRNA delta(2)-isopentenylpyrophosphate transferase YP_001397423.1 169775 D 360109 CDS YP_001397424.1 153952562 5390341 complement(170630..171193) 1 NC_009707.1 identified by match to protein family HMM PF02659; hypothetical protein 171193 5390341 JJD26997_0180 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397424.1 170630 R 360109 CDS YP_001397425.1 153951398 5390080 171988..172650 1 NC_009707.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe 172650 sodB 5390080 sodB Campylobacter jejuni subsp. doylei 269.97 superoxide dismutase, Fe YP_001397425.1 171988 D 360109 CDS YP_001397426.1 153952501 5389726 172719..173411 1 NC_009707.1 hypothetical protein 173411 5389726 JJD26997_0185 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397426.1 172719 D 360109 CDS YP_001397427.1 153951468 5388961 complement(173425..174630) 1 NC_009707.1 identified by match to protein family HMM PF03435; saccharopine dehydrogenase 174630 5388961 JJD26997_0186 Campylobacter jejuni subsp. doylei 269.97 saccharopine dehydrogenase YP_001397427.1 173425 R 360109 CDS YP_001397428.1 153952007 5389580 complement(174666..175574) 1 NC_009707.1 identified by match to protein family HMM PF00005; iron ABC transporter ATP binding subunit 175574 5389580 JJD26997_0187 Campylobacter jejuni subsp. doylei 269.97 iron ABC transporter ATP binding subunit YP_001397428.1 174666 R 360109 CDS YP_001397429.1 153950951 5388870 complement(175558..177174) 1 NC_009707.1 identified by match to protein family HMM PF00528; iron ABC transporter permease 177174 5388870 JJD26997_0188 Campylobacter jejuni subsp. doylei 269.97 iron ABC transporter permease YP_001397429.1 175558 R 360109 CDS YP_001397430.1 153952205 5389839 complement(177174..178178) 1 NC_009707.1 identified by match to protein family HMM PF01547; iron ABC transporter periplasmic iron-binding protein 178178 5389839 JJD26997_0189 Campylobacter jejuni subsp. doylei 269.97 iron ABC transporter periplasmic iron-binding protein YP_001397430.1 177174 R 360109 CDS YP_001397431.1 153951263 5390089 178496..179695 1 NC_009707.1 in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; putative transporter 179695 5390089 JJD26997_0190 Campylobacter jejuni subsp. doylei 269.97 putative transporter YP_001397431.1 178496 D 360109 CDS YP_001397432.1 153951504 5389710 179866..181152 1 NC_009707.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; putative transporter 181152 5389710 JJD26997_0191 Campylobacter jejuni subsp. doylei 269.97 putative transporter YP_001397432.1 179866 D 360109 CDS YP_001397433.1 153951042 5389009 complement(182352..182561) 1 NC_009707.1 identified by match to protein family HMM PF03831; PhnA domain-containing protein 182561 5389009 JJD26997_0195 Campylobacter jejuni subsp. doylei 269.97 PhnA domain-containing protein YP_001397433.1 182352 R 360109 CDS YP_001397434.1 153952005 5390061 complement(182545..183273) 1 NC_009707.1 identified by match to protein family HMM PF03741; TerC family integral membrane protein 183273 5390061 JJD26997_0196 Campylobacter jejuni subsp. doylei 269.97 TerC family integral membrane protein YP_001397434.1 182545 R 360109 CDS YP_001397435.1 153950958 5389802 complement(183345..183911) 1 NC_009707.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 183911 purN 5389802 purN Campylobacter jejuni subsp. doylei 269.97 phosphoribosylglycinamide formyltransferase YP_001397435.1 183345 R 360109 CDS YP_001397436.1 153951970 5389903 complement(183902..185272) 1 NC_009707.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; hypothetical protein 185272 5389903 JJD26997_0198 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397436.1 183902 R 360109 CDS YP_001397437.1 153951620 5389511 complement(185256..185954) 1 NC_009707.1 identified by match to protein family HMM PF01936; hypothetical protein 185954 5389511 JJD26997_0199 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397437.1 185256 R 360109 CDS YP_001397438.1 153952653 5389325 complement(185956..187461) 1 NC_009707.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368; Mg chelatase-like protein 187461 5389325 JJD26997_0200 Campylobacter jejuni subsp. doylei 269.97 Mg chelatase-like protein YP_001397438.1 185956 R 360109 CDS YP_001397439.1 153951420 5389808 complement(187458..187985) 1 NC_009707.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 187985 def 5389808 def Campylobacter jejuni subsp. doylei 269.97 peptide deformylase YP_001397439.1 187458 R 360109 CDS YP_001397440.1 153951283 5390498 complement(188021..188605) 1 NC_009707.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 188605 clpP 5390498 clpP Campylobacter jejuni subsp. doylei 269.97 ATP-dependent Clp protease proteolytic subunit YP_001397440.1 188021 R 360109 CDS YP_001397441.1 153951136 5388622 190082..190654 1 NC_009707.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 190654 folE 5388622 folE Campylobacter jejuni subsp. doylei 269.97 GTP cyclohydrolase I YP_001397441.1 190082 D 360109 CDS YP_001397442.1 153951633 5389449 190654..192039 1 NC_009707.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 192039 fliI 5389449 fliI Campylobacter jejuni subsp. doylei 269.97 flagellum-specific ATP synthase YP_001397442.1 190654 D 360109 CDS YP_001397443.1 153951981 5390168 complement(192042..193379) 1 NC_009707.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 193379 purF 5390168 purF Campylobacter jejuni subsp. doylei 269.97 amidophosphoribosyltransferase YP_001397443.1 192042 R 360109 CDS YP_001397444.1 153951971 5389928 complement(193364..194110) 1 NC_009707.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 194110 dapB 5389928 dapB Campylobacter jejuni subsp. doylei 269.97 dihydrodipicolinate reductase YP_001397444.1 193364 R 360109 CDS YP_001397445.1 153951019 5389678 complement(194173..195354) 1 NC_009707.1 identified by match to protein family HMM PF00004; recombination factor protein RarA 195354 5389678 JJD26997_0208 Campylobacter jejuni subsp. doylei 269.97 recombination factor protein RarA YP_001397445.1 194173 R 360109 CDS YP_001397446.1 153952070 5389788 complement(195354..196475) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 196475 5389788 JJD26997_0209 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397446.1 195354 R 360109 CDS YP_001397447.1 153952377 5389299 complement(196610..196957) 1 NC_009707.1 hypothetical protein 196957 5389299 JJD26997_0210 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397447.1 196610 R 360109 CDS YP_001397448.1 153951029 5389489 198126..200120 1 NC_009707.1 identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733; OPT family oligopeptide transporter 200120 5389489 JJD26997_0214 Campylobacter jejuni subsp. doylei 269.97 OPT family oligopeptide transporter YP_001397448.1 198126 D 360109 CDS YP_001397449.1 153952618 5388937 200194..200997 1 NC_009707.1 identified by match to protein family HMM PF02673; match to protein family HMM TIGR00753; putative undecaprenol kinase 200997 5388937 JJD26997_0215 Campylobacter jejuni subsp. doylei 269.97 putative undecaprenol kinase YP_001397449.1 200194 D 360109 CDS YP_001397450.1 153950997 5388923 201128..202936 1 NC_009707.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 202936 thrS 5388923 thrS Campylobacter jejuni subsp. doylei 269.97 threonyl-tRNA synthetase YP_001397450.1 201128 D 360109 CDS YP_001397451.1 153951486 5390586 202933..203451 1 NC_009707.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 203451 infC 5390586 infC Campylobacter jejuni subsp. doylei 269.97 translation initiation factor IF-3 YP_001397451.1 202933 D 360109 CDS YP_001397452.1 153952442 5389473 203490..204581 1 NC_009707.1 identified by match to protein family HMM PF02086; D12 class N6 adenine-specific DNA methyltransferase 204581 5389473 JJD26997_0218 Campylobacter jejuni subsp. doylei 269.97 D12 class N6 adenine-specific DNA methyltransferase YP_001397452.1 203490 D 360109 CDS YP_001397453.1 153951917 5389841 208258..209286 1 NC_009707.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 209286 argC 5389841 argC Campylobacter jejuni subsp. doylei 269.97 N-acetyl-gamma-glutamyl-phosphate reductase YP_001397453.1 208258 D 360109 CDS YP_001397454.1 153951641 5389826 209296..209742 1 NC_009707.1 identified by match to protein family HMM PF00583; acetyltransferase 209742 5389826 JJD26997_0223 Campylobacter jejuni subsp. doylei 269.97 acetyltransferase YP_001397454.1 209296 D 360109 CDS YP_001397455.1 153952612 5390346 209752..210591 1 NC_009707.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 210591 argB 5390346 argB Campylobacter jejuni subsp. doylei 269.97 acetylglutamate kinase YP_001397455.1 209752 D 360109 CDS YP_001397456.1 153952018 5388675 210601..211782 1 NC_009707.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine aminotransferase 211782 argD 5388675 argD Campylobacter jejuni subsp. doylei 269.97 acetylornithine aminotransferase YP_001397456.1 210601 D 360109 CDS YP_001397457.1 153951015 5390428 complement(211801..212430) 1 NC_009707.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 212430 pcm 5390428 pcm Campylobacter jejuni subsp. doylei 269.97 protein-L-isoaspartate O-methyltransferase YP_001397457.1 211801 R 360109 CDS YP_001397458.1 153951954 5390595 212519..213067 1 NC_009707.1 identified by match to protein family HMM PF00132; hexapaptide repeat-containing transferase 213067 5390595 JJD26997_0228 Campylobacter jejuni subsp. doylei 269.97 hexapaptide repeat-containing transferase YP_001397458.1 212519 D 360109 CDS YP_001397459.1 153952632 5390285 complement(213036..214406) 1 NC_009707.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 214406 5390285 JJD26997_0227 Campylobacter jejuni subsp. doylei 269.97 nicotinate phosphoribosyltransferase YP_001397459.1 213036 R 360109 CDS YP_001397460.1 153952438 5390231 complement(214396..215418) 1 NC_009707.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 215418 nrdF 5390231 nrdF Campylobacter jejuni subsp. doylei 269.97 ribonucleotide-diphosphate reductase subunit beta YP_001397460.1 214396 R 360109 CDS YP_001397461.1 153951450 5390599 complement(215432..215842) 1 NC_009707.1 identified by match to protein family HMM PF06271; hypothetical protein 215842 5390599 JJD26997_0230 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397461.1 215432 R 360109 CDS YP_001397462.1 153951184 5389920 complement(215843..216451) 1 NC_009707.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 216451 pyrE 5389920 pyrE Campylobacter jejuni subsp. doylei 269.97 orotate phosphoribosyltransferase YP_001397462.1 215843 R 360109 CDS YP_001397463.1 153952376 5389208 complement(216454..217011) 1 NC_009707.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 217011 frr 5389208 frr Campylobacter jejuni subsp. doylei 269.97 ribosome recycling factor YP_001397463.1 216454 R 360109 CDS YP_001397464.1 153951054 5389054 complement(217027..217395) 1 NC_009707.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 217395 secG 5389054 secG Campylobacter jejuni subsp. doylei 269.97 preprotein translocase subunit SecG YP_001397464.1 217027 R 360109 CDS YP_001397465.1 153952171 5389036 complement(217499..218194) 1 NC_009707.1 identified by match to protein family HMM PF01027; hypothetical protein 218194 5389036 JJD26997_0234 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397465.1 217499 R 360109 CDS YP_001397466.1 153952251 5388733 218354..218989 1 NC_009707.1 identified by match to protein family HMM PF00484; carbonic anhydrase 218989 cynT 5388733 cynT Campylobacter jejuni subsp. doylei 269.97 carbonic anhydrase YP_001397466.1 218354 D 360109 CDS YP_001397467.1 153951689 5388787 218986..220869 1 NC_009707.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 220869 5388787 JJD26997_0236 Campylobacter jejuni subsp. doylei 269.97 mechanosensitive ion channel family protein YP_001397467.1 218986 D 360109 CDS YP_001397468.1 153951672 5390487 complement(220893..221864) 1 NC_009707.1 identified by match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; NifU family protein 221864 5390487 JJD26997_0237 Campylobacter jejuni subsp. doylei 269.97 NifU family protein YP_001397468.1 220893 R 360109 CDS YP_001397469.1 153952496 5390314 complement(221874..223055) 1 NC_009707.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR03403; putative cysteine desulfurase 223055 5390314 JJD26997_0238 Campylobacter jejuni subsp. doylei 269.97 putative cysteine desulfurase YP_001397469.1 221874 R 360109 CDS YP_001397470.1 153950963 5389252 complement(223767..224933) 1 NC_009707.1 hypothetical protein 224933 5389252 JJD26997_0240 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397470.1 223767 R 360109 CDS YP_001397471.1 153950939 5389013 225095..225286 1 NC_009707.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 225286 rpmI 5389013 rpmI Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L35 YP_001397471.1 225095 D 360109 CDS YP_001397472.1 153952172 5390349 225380..225733 1 NC_009707.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 225733 rplT 5390349 rplT Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L20 YP_001397472.1 225380 D 360109 CDS YP_001397473.1 153951546 5390240 227230..228087 1 NC_009707.1 identified by match to protein family HMM PF08668; hypothetical protein 228087 5390240 JJD26997_0247 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397473.1 227230 D 360109 CDS YP_001397474.1 153951287 5390494 228117..228593 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 228593 5390494 JJD26997_0249 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397474.1 228117 D 360109 CDS YP_001397475.1 153952283 5389611 complement(228562..229872) 1 NC_009707.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 229872 5389611 JJD26997_0248 Campylobacter jejuni subsp. doylei 269.97 major facilitator superfamily protein YP_001397475.1 228562 R 360109 CDS YP_001397476.1 153952453 5390451 complement(229856..230032) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 230032 5390451 JJD26997_0250 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397476.1 229856 R 360109 CDS YP_001397477.1 153951477 5389881 230125..230598 1 NC_009707.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 230598 moaC 5389881 moaC Campylobacter jejuni subsp. doylei 269.97 molybdenum cofactor biosynthesis protein MoaC YP_001397477.1 230125 D 360109 CDS YP_001397478.1 153952624 5389318 230576..230839 1 NC_009707.1 hypothetical protein 230839 5389318 JJD26997_0252 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397478.1 230576 D 360109 CDS YP_001397479.1 153951627 5390416 230853..231989 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 231989 5390416 JJD26997_0253 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397479.1 230853 D 360109 CDS YP_001397480.1 153951075 5389105 complement(232010..232789) 1 NC_009707.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 232789 xth 5389105 xth Campylobacter jejuni subsp. doylei 269.97 exodeoxyribonuclease III YP_001397480.1 232010 R 360109 CDS YP_001397481.1 153951213 5388866 233470..234711 1 NC_009707.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISHa1675 transposase B 234711 5388866 JJD26997_0256 Campylobacter jejuni subsp. doylei 269.97 ISHa1675 transposase B YP_001397481.1 233470 D 360109 CDS YP_001397482.1 153952348 5389954 complement(237090..238253) 1 NC_009707.1 identified by match to protein family HMM PF01053; cystathionine beta-lyase 238253 metC 5389954 metC Campylobacter jejuni subsp. doylei 269.97 cystathionine beta-lyase YP_001397482.1 237090 R 360109 CDS YP_001397483.1 153951005 5390200 complement(239709..240071) 1 NC_009707.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; putative endoribonuclease L-PSP 240071 5390200 JJD26997_0262 Campylobacter jejuni subsp. doylei 269.97 putative endoribonuclease L-PSP YP_001397483.1 239709 R 360109 CDS YP_001397484.1 153951983 5389243 240239..240895 1 NC_009707.1 identified by match to protein family HMM PF08348; hypothetical protein 240895 5389243 JJD26997_0263 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397484.1 240239 D 360109 CDS YP_001397485.1 153951212 5389158 complement(240896..241366) 1 NC_009707.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 241366 5389158 JJD26997_0264 Campylobacter jejuni subsp. doylei 269.97 ankyrin repeat-containing protein YP_001397485.1 240896 R 360109 CDS YP_001397486.1 153952069 5389428 complement(241423..242847) 1 NC_009707.1 identified by match to protein family HMM PF00199; catalase 242847 katA 5389428 katA Campylobacter jejuni subsp. doylei 269.97 catalase YP_001397486.1 241423 R 360109 CDS YP_001397487.1 153951133 5389298 243018..243332 1 NC_009707.1 hypothetical protein 243332 5389298 JJD26997_0266 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397487.1 243018 D 360109 CDS YP_001397488.1 153951849 5388667 243335..244030 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 244030 5388667 JJD26997_0267 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397488.1 243335 D 360109 CDS YP_001397489.1 153951677 5389992 244030..244521 1 NC_009707.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 244521 fldA 5389992 fldA Campylobacter jejuni subsp. doylei 269.97 flavodoxin FldA YP_001397489.1 244030 D 360109 CDS YP_001397490.1 153951866 5389946 complement(245097..245807) 1 NC_009707.1 hypothetical protein 245807 5389946 JJD26997_0271 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397490.1 245097 R 360109 CDS YP_001397491.1 153951384 5389524 complement(245856..247661) 1 NC_009707.1 identified by match to protein family HMM PF00009; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific elongation factor 247661 selB 5389524 selB Campylobacter jejuni subsp. doylei 269.97 selenocysteine-specific elongation factor YP_001397491.1 245856 R 360109 CDS YP_001397492.1 153952149 5388721 complement(247658..248980) 1 NC_009707.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 248980 selA 5388721 selA Campylobacter jejuni subsp. doylei 269.97 selenocysteine synthase YP_001397492.1 247658 R 360109 CDS YP_001397493.1 153952390 5389667 249058..250731 1 NC_009707.1 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding domain-containing protein 250731 5389667 JJD26997_0275 Campylobacter jejuni subsp. doylei 269.97 iron-sulfur cluster-binding domain-containing protein YP_001397493.1 249058 D 360109 CDS YP_001397494.1 153952466 5389418 complement(250728..252029) 1 NC_009707.1 identified by match to protein family HMM PF07690; multidrug ABC transporter 252029 5389418 JJD26997_0274 Campylobacter jejuni subsp. doylei 269.97 multidrug ABC transporter YP_001397494.1 250728 R 360109 CDS YP_001397495.1 153951403 5389728 252195..252797 1 NC_009707.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 252797 5389728 JJD26997_0276 Campylobacter jejuni subsp. doylei 269.97 putative deoxyribonucleotide triphosphate pyrophosphatase YP_001397495.1 252195 D 360109 CDS YP_001397496.1 153952516 5389960 complement(252829..255300) 1 NC_009707.1 hypothetical protein 255300 5389960 JJD26997_0277 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397496.1 252829 R 360109 CDS YP_001397497.1 153951792 5389933 complement(255300..255869) 1 NC_009707.1 identified by match to protein family HMM PF05494; putative toluene tolerance protein 255869 5389933 JJD26997_0278 Campylobacter jejuni subsp. doylei 269.97 putative toluene tolerance protein YP_001397497.1 255300 R 360109 CDS YP_001397498.1 153952467 5390369 complement(255869..256579) 1 NC_009707.1 identified by match to protein family HMM PF04333; VacJ family lipoprotein 256579 5390369 JJD26997_0279 Campylobacter jejuni subsp. doylei 269.97 VacJ family lipoprotein YP_001397498.1 255869 R 360109 CDS YP_001397499.1 153951163 5389729 complement(256624..257064) 1 NC_009707.1 identified by match to protein family HMM PF00156; putative nucleotide phosphoribosyltransferase 257064 5389729 JJD26997_0280 Campylobacter jejuni subsp. doylei 269.97 putative nucleotide phosphoribosyltransferase YP_001397499.1 256624 R 360109 CDS YP_001397500.1 153952393 5390452 complement(257078..258397) 1 NC_009707.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease family protein 258397 5390452 JJD26997_0281 Campylobacter jejuni subsp. doylei 269.97 xanthine/uracil permease family protein YP_001397500.1 257078 R 360109 CDS YP_001397501.1 153952093 5389527 complement(258406..259470) 1 NC_009707.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; hypothetical protein 259470 5389527 JJD26997_0282 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397501.1 258406 R 360109 CDS YP_001397502.1 153951333 5390087 259599..261947 1 NC_009707.1 GlnD family protein 261947 5390087 JJD26997_0283 Campylobacter jejuni subsp. doylei 269.97 GlnD family protein YP_001397502.1 259599 D 360109 CDS YP_001397503.1 153951976 5390011 261951..263747 1 NC_009707.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 263747 glmS 5390011 glmS Campylobacter jejuni subsp. doylei 269.97 glucosamine--fructose-6-phosphate aminotransferase YP_001397503.1 261951 D 360109 CDS YP_001397504.1 153952596 5390481 263881..265272 1 NC_009707.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 265272 fumC 5390481 fumC Campylobacter jejuni subsp. doylei 269.97 fumarate hydratase YP_001397504.1 263881 D 360109 CDS YP_001397505.1 153952049 5389891 complement(265302..266345) 1 NC_009707.1 identified by match to protein family HMM PF01594; hypothetical protein 266345 5389891 JJD26997_0286 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397505.1 265302 R 360109 CDS YP_001397506.1 153952346 5389465 complement(266349..267356) 1 NC_009707.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 267356 ruvB 5389465 ruvB Campylobacter jejuni subsp. doylei 269.97 Holliday junction DNA helicase RuvB YP_001397506.1 266349 R 360109 CDS YP_001397507.1 153952161 5389002 267406..267858 1 NC_009707.1 hypothetical protein 267858 5389002 JJD26997_0288 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397507.1 267406 D 360109 CDS YP_001397508.1 153951041 5388826 268399..269601 1 NC_009707.1 identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 269601 5388826 JJD26997_0292 Campylobacter jejuni subsp. doylei 269.97 phage integrase family site specific recombinase YP_001397508.1 268399 D 360109 CDS YP_001397509.1 153951998 5389391 complement(269598..269768) 1 NC_009707.1 DNA binding domain-containing protein 269768 5389391 JJD26997_0291 Campylobacter jejuni subsp. doylei 269.97 DNA binding domain-containing protein YP_001397509.1 269598 R 360109 CDS YP_001397510.1 153951473 5390261 complement(270291..270497) 1 NC_009707.1 hypothetical protein 270497 5390261 JJD26997_0294 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397510.1 270291 R 360109 CDS YP_001397511.1 153952451 5388581 complement(270533..271306) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 271306 5388581 JJD26997_0295 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397511.1 270533 R 360109 CDS YP_001397512.1 153951252 5389750 complement(271318..271500) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 271500 5389750 JJD26997_0296 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397512.1 271318 R 360109 CDS YP_001397513.1 153952458 5389231 complement(271524..271919) 1 NC_009707.1 prophage Lp1 protein 30 271919 5389231 JJD26997_0297 Campylobacter jejuni subsp. doylei 269.97 prophage Lp1 protein 30 YP_001397513.1 271524 R 360109 CDS YP_001397514.1 153951116 5389295 complement(271996..272157) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 272157 5389295 JJD26997_0298 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397514.1 271996 R 360109 CDS YP_001397515.1 153951492 5389915 complement(272570..272794) 1 NC_009707.1 hypothetical protein 272794 5389915 JJD26997_0299 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397515.1 272570 R 360109 CDS YP_001397516.1 153952321 5389543 complement(272796..273020) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 273020 5389543 JJD26997_0300 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397516.1 272796 R 360109 CDS YP_001397517.1 153952232 5389711 complement(273030..273407) 1 NC_009707.1 hypothetical protein 273407 5389711 JJD26997_0301 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397517.1 273030 R 360109 CDS YP_001397518.1 153951191 5389430 complement(273549..273809) 1 NC_009707.1 hypothetical protein 273809 5389430 JJD26997_0302 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397518.1 273549 R 360109 CDS YP_001397519.1 153951023 5389275 complement(273790..274479) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 274479 5389275 JJD26997_0303 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397519.1 273790 R 360109 CDS YP_001397520.1 153952549 5389225 complement(274479..275213) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 275213 5389225 JJD26997_0304 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397520.1 274479 R 360109 CDS YP_001397521.1 153951364 5389239 complement(275210..276070) 1 NC_009707.1 hypothetical protein 276070 5389239 JJD26997_0305 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397521.1 275210 R 360109 CDS YP_001397522.1 153951902 5390531 complement(276060..276803) 1 NC_009707.1 identified by match to protein family HMM PF03374; DNA-binding protein Roi 276803 5390531 JJD26997_0306 Campylobacter jejuni subsp. doylei 269.97 DNA-binding protein Roi YP_001397522.1 276060 R 360109 CDS YP_001397523.1 153951232 5390605 complement(276806..277486) 1 NC_009707.1 identified by match to protein family HMM PF08346; putative phage anti-repressor protein 277486 5390605 JJD26997_0307 Campylobacter jejuni subsp. doylei 269.97 putative phage anti-repressor protein YP_001397523.1 276806 R 360109 CDS YP_001397524.1 153951977 5388657 complement(277632..277787) 1 NC_009707.1 hypothetical protein 277787 5388657 JJD26997_0308 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397524.1 277632 R 360109 CDS YP_001397525.1 153952076 5390482 complement(277798..278091) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 278091 5390482 JJD26997_0309 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397525.1 277798 R 360109 CDS YP_001397526.1 153951016 5390161 complement(278101..278955) 1 NC_009707.1 hypothetical protein 278955 5390161 JJD26997_0310 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397526.1 278101 R 360109 CDS YP_001397527.1 153952199 5390236 complement(278992..279252) 1 NC_009707.1 hypothetical protein 279252 5390236 JJD26997_0311 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397527.1 278992 R 360109 CDS YP_001397528.1 153951204 5388745 complement(279243..279512) 1 NC_009707.1 hypothetical protein 279512 5388745 JJD26997_0312 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397528.1 279243 R 360109 CDS YP_001397529.1 153952352 5389681 complement(279760..279930) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 279930 5389681 JJD26997_0313 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397529.1 279760 R 360109 CDS YP_001397530.1 153951438 5388875 complement(280342..280614) 1 NC_009707.1 hypothetical protein 280614 5388875 JJD26997_0314 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397530.1 280342 R 360109 CDS YP_001397531.1 153951821 5389648 280765..280890 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 280890 5389648 JJD26997_0315 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397531.1 280765 D 360109 CDS YP_001397532.1 153951225 5389583 complement(281220..281954) 1 NC_009707.1 identified by match to protein family HMM PF00717; putative phage repressor protein 281954 5389583 JJD26997_0316 Campylobacter jejuni subsp. doylei 269.97 putative phage repressor protein YP_001397532.1 281220 R 360109 CDS YP_001397533.1 153952287 5389755 282064..282282 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 282282 5389755 JJD26997_0317 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397533.1 282064 D 360109 CDS YP_001397534.1 153952533 5390016 282279..282467 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 282467 5390016 JJD26997_0319 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397534.1 282279 D 360109 CDS YP_001397535.1 153951759 5390537 complement(282464..282613) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 282613 5390537 JJD26997_0318 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397535.1 282464 R 360109 CDS YP_001397536.1 153951846 5390391 282768..283982 1 NC_009707.1 hypothetical protein 283982 5390391 JJD26997_0320 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397536.1 282768 D 360109 CDS YP_001397537.1 153951141 5389908 283994..284644 1 NC_009707.1 hypothetical protein 284644 5389908 JJD26997_0321 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397537.1 283994 D 360109 CDS YP_001397538.1 153951963 5389461 284715..285104 1 NC_009707.1 identified by match to protein family HMM PF05866; crossover junction endodeoxyribonuclease RusA superfamily protein 285104 5389461 JJD26997_0322 Campylobacter jejuni subsp. doylei 269.97 crossover junction endodeoxyribonuclease RusA superfamily protein YP_001397538.1 284715 D 360109 CDS YP_001397539.1 153952072 5389137 285097..285468 1 NC_009707.1 hypothetical protein 285468 5389137 JJD26997_0323 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397539.1 285097 D 360109 CDS YP_001397540.1 153951273 5388851 285465..286757 1 NC_009707.1 putative terminase B protein 286757 5388851 JJD26997_0324 Campylobacter jejuni subsp. doylei 269.97 putative terminase B protein YP_001397540.1 285465 D 360109 CDS YP_001397541.1 153952255 5388979 286747..287019 1 NC_009707.1 hypothetical protein 287019 5388979 JJD26997_0325 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397541.1 286747 D 360109 CDS YP_001397542.1 153952365 5388696 287000..288523 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 288523 5388696 JJD26997_0326 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397542.1 287000 D 360109 CDS YP_001397543.1 153952022 5388856 288510..288713 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 288713 5388856 JJD26997_0327 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397543.1 288510 D 360109 CDS YP_001397544.1 153950962 5389112 288703..289347 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 289347 5389112 JJD26997_0328 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397544.1 288703 D 360109 CDS YP_001397545.1 153951964 5389012 289358..289726 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 289726 5389012 JJD26997_0329 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397545.1 289358 D 360109 CDS YP_001397546.1 153952101 5388623 290913..294578 1 NC_009707.1 hypothetical protein 294578 5388623 JJD26997_0332 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397546.1 290913 D 360109 CDS YP_001397547.1 153952437 5388845 complement(294729..294857) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 294857 5388845 JJD26997_0333 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397547.1 294729 R 360109 CDS YP_001397548.1 153951411 5389079 complement(294811..294996) 1 NC_009707.1 hypothetical protein 294996 5389079 JJD26997_0334 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397548.1 294811 R 360109 CDS YP_001397549.1 153952597 5388882 295491..296765 1 NC_009707.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; alpha-ketoglutarate permease 296765 5388882 JJD26997_0335 Campylobacter jejuni subsp. doylei 269.97 alpha-ketoglutarate permease YP_001397549.1 295491 D 360109 CDS YP_001397550.1 153951261 5389889 complement(297763..299847) 1 NC_009707.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 299847 ppk 5389889 ppk Campylobacter jejuni subsp. doylei 269.97 polyphosphate kinase YP_001397550.1 297763 R 360109 CDS YP_001397551.1 153952264 5389708 300035..300550 1 NC_009707.1 identified by match to protein family HMM PF03264; match to protein family HMM TIGR03153; cytochrome c-type protein nrfH 300550 nrfH 5389708 nrfH Campylobacter jejuni subsp. doylei 269.97 cytochrome c-type protein nrfH YP_001397551.1 300035 D 360109 CDS YP_001397552.1 153951301 5390367 300565..302397 1 NC_009707.1 identified by match to protein family HMM PF02335; cytochrome c552 302397 nrfA 5390367 nrfA Campylobacter jejuni subsp. doylei 269.97 cytochrome c552 YP_001397552.1 300565 D 360109 CDS YP_001397553.1 153951830 5390555 302534..303088 1 NC_009707.1 hypothetical protein 303088 5390555 JJD26997_0342 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397553.1 302534 D 360109 CDS YP_001397554.1 153951461 5389133 complement(303242..304123) 1 NC_009707.1 identified by match to protein family HMM PF00589; phage integrase 304123 5389133 JJD26997_0344 Campylobacter jejuni subsp. doylei 269.97 phage integrase YP_001397554.1 303242 R 360109 CDS YP_001397555.1 153952085 5389662 complement(304113..305162) 1 NC_009707.1 identified by match to protein family HMM PF05840; bacteriophage replication gene A protein 305162 5389662 JJD26997_0345 Campylobacter jejuni subsp. doylei 269.97 bacteriophage replication gene A protein YP_001397555.1 304113 R 360109 CDS YP_001397556.1 153952655 5390000 complement(305393..305533) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 305533 5390000 JJD26997_0346 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397556.1 305393 R 360109 CDS YP_001397557.1 153951393 5390421 complement(305552..306727) 1 NC_009707.1 identified by match to protein family HMM PF00263; type II and III secretion system protein 306727 5390421 JJD26997_0347 Campylobacter jejuni subsp. doylei 269.97 type II and III secretion system protein YP_001397557.1 305552 R 360109 CDS YP_001397558.1 153951011 5390427 complement(306690..307850) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 307850 5390427 JJD26997_0348 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397558.1 306690 R 360109 CDS YP_001397559.1 153952177 5390288 complement(307855..308283) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 308283 5390288 JJD26997_0349 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397559.1 307855 R 360109 CDS YP_001397560.1 153951304 5389810 complement(308286..310121) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 310121 5389810 JJD26997_0350 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397560.1 308286 R 360109 CDS YP_001397561.1 153951407 5388801 complement(310118..310246) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 310246 5388801 JJD26997_0351 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397561.1 310118 R 360109 CDS YP_001397562.1 153952558 5389098 complement(310609..310749) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 310749 5389098 JJD26997_0352 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397562.1 310609 R 360109 CDS YP_001397563.1 153951631 5389791 complement(310762..311001) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 311001 5389791 JJD26997_0353 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397563.1 310762 R 360109 CDS YP_001397564.1 153952553 5388829 complement(311105..311473) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 311473 5388829 JJD26997_0354 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397564.1 311105 R 360109 CDS YP_001397565.1 153950955 5389664 311760..311993 1 NC_009707.1 cobaltochelatase subunit CobN 311993 5389664 JJD26997_0355 Campylobacter jejuni subsp. doylei 269.97 cobaltochelatase subunit CobN YP_001397565.1 311760 D 360109 CDS YP_001397566.1 153952127 5389364 312084..312569 1 NC_009707.1 hypothetical protein 312569 5389364 JJD26997_0356 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397566.1 312084 D 360109 CDS YP_001397567.1 153951375 5388879 complement(312601..312882) 1 NC_009707.1 identified by match to protein family HMM PF05016; plasmid stabilization system protein 312882 5388879 JJD26997_0357 Campylobacter jejuni subsp. doylei 269.97 plasmid stabilization system protein YP_001397567.1 312601 R 360109 CDS YP_001397568.1 153952123 5390399 complement(312882..313106) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 313106 5390399 JJD26997_0358 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397568.1 312882 R 360109 CDS YP_001397569.1 153952290 5388695 complement(314296..314871) 1 NC_009707.1 putative molybdopterin-guanine dinucleotide biosynthesis protein 314871 5388695 JJD26997_0360 Campylobacter jejuni subsp. doylei 269.97 putative molybdopterin-guanine dinucleotide biosynthesis protein YP_001397569.1 314296 R 360109 CDS YP_001397570.1 153950971 5389373 314933..316240 1 NC_009707.1 identified by match to protein family HMM PF05670; putative fibronectin/fibrinogen binding protein 316240 5389373 JJD26997_0361 Campylobacter jejuni subsp. doylei 269.97 putative fibronectin/fibrinogen binding protein YP_001397570.1 314933 D 360109 CDS YP_001397571.1 153952609 5390043 316242..316577 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 316577 5390043 JJD26997_0362 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397571.1 316242 D 360109 CDS YP_001397572.1 153951857 5388949 316587..317312 1 NC_009707.1 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 317312 cdsA 5388949 cdsA Campylobacter jejuni subsp. doylei 269.97 phosphatidate cytidylyltransferase YP_001397572.1 316587 D 360109 CDS YP_001397573.1 153951073 5390301 317309..318379 1 NC_009707.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 318379 dxr 5390301 dxr Campylobacter jejuni subsp. doylei 269.97 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001397573.1 317309 D 360109 CDS YP_001397574.1 153952079 5388918 318381..319775 1 NC_009707.1 hypothetical protein 319775 5388918 JJD26997_0365 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397574.1 318381 D 360109 CDS YP_001397575.1 153951317 5390173 319772..320779 1 NC_009707.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 320779 gcp 5390173 gcp Campylobacter jejuni subsp. doylei 269.97 putative DNA-binding/iron metalloprotein/AP endonuclease YP_001397575.1 319772 D 360109 CDS YP_001397576.1 153952006 5389503 320780..321289 1 NC_009707.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; transformation system protein 321289 ctsG 5389503 ctsG Campylobacter jejuni subsp. doylei 269.97 transformation system protein YP_001397576.1 320780 D 360109 CDS YP_001397577.1 153951599 5388942 322548..324365 1 NC_009707.1 identified by match to protein family HMM PF01973; motility accessory factor 324365 maf-6 5388942 maf-6 Campylobacter jejuni subsp. doylei 269.97 motility accessory factor YP_001397577.1 322548 D 360109 CDS YP_001397578.1 153951592 5390504 324362..326179 1 NC_009707.1 identified by match to protein family HMM PF01973; motility accessory factor 326179 5390504 JJD26997_0371 Campylobacter jejuni subsp. doylei 269.97 motility accessory factor YP_001397578.1 324362 D 360109 CDS YP_001397579.1 153951910 5389089 326255..327976 1 NC_009707.1 FlaA; structural flagella protein; in Helicobacter the flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin 327976 5389089 JJD26997_0372 Campylobacter jejuni subsp. doylei 269.97 flagellin YP_001397579.1 326255 D 360109 CDS YP_001397580.1 153950942 5390099 complement(328007..329896) 1 NC_009707.1 identified by match to protein family HMM PF01973; motility accessory factor 329896 maf-4 5390099 maf-4 Campylobacter jejuni subsp. doylei 269.97 motility accessory factor YP_001397580.1 328007 R 360109 CDS YP_001397581.1 153951879 5388765 complement(329893..331842) 1 NC_009707.1 identified by match to protein family HMM PF01973; motility accessory factor 331842 maf-3 5388765 maf-3 Campylobacter jejuni subsp. doylei 269.97 motility accessory factor YP_001397581.1 329893 R 360109 CDS YP_001397582.1 153952124 5389088 complement(333705..335648) 1 NC_009707.1 identified by match to protein family HMM PF01973; motility accessory factor 335648 maf-1 5389088 maf-1 Campylobacter jejuni subsp. doylei 269.97 motility accessory factor YP_001397582.1 333705 R 360109 CDS YP_001397583.1 153952269 5389484 complement(335636..336406) 1 NC_009707.1 flagellin modification protein A 336406 ptmA 5389484 ptmA Campylobacter jejuni subsp. doylei 269.97 flagellin modification protein A YP_001397583.1 335636 R 360109 CDS YP_001397584.1 153951409 5389686 complement(336406..337113) 1 NC_009707.1 identified by match to protein family HMM PF02348; posttranslational flagellin modification protein B 337113 ptmB 5389686 ptmB Campylobacter jejuni subsp. doylei 269.97 posttranslational flagellin modification protein B YP_001397584.1 336406 R 360109 CDS YP_001397585.1 153951173 5388880 complement(337106..338011) 1 NC_009707.1 identified by match to protein family HMM PF01408; hypothetical protein 338011 5388880 JJD26997_0379 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397585.1 337106 R 360109 CDS YP_001397586.1 153952158 5389701 complement(338008..339033) 1 NC_009707.1 identified by match to protein family HMM PF00483; match to protein family HMM PF00571; nucleotidyltransferase family protein 339033 5389701 JJD26997_0380 Campylobacter jejuni subsp. doylei 269.97 nucleotidyltransferase family protein YP_001397586.1 338008 R 360109 CDS YP_001397587.1 153950952 5389515 complement(339042..340232) 1 NC_009707.1 identified by match to protein family HMM PF02350; UDP-N-acetylglucosamine 2-epimerase 340232 5389515 JJD26997_0381 Campylobacter jejuni subsp. doylei 269.97 UDP-N-acetylglucosamine 2-epimerase YP_001397587.1 339042 R 360109 CDS YP_001397588.1 153952116 5390048 complement(340880..341791) 1 NC_009707.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911; methionyl-tRNA formyltransferase 341791 5390048 JJD26997_0383 Campylobacter jejuni subsp. doylei 269.97 methionyl-tRNA formyltransferase YP_001397588.1 340880 R 360109 CDS YP_001397589.1 153952424 5390516 complement(341788..342975) 1 NC_009707.1 identified by match to protein family HMM PF02350; UDP-N-acetylglucosamine 2-epimerase 342975 5390516 JJD26997_0384 Campylobacter jejuni subsp. doylei 269.97 UDP-N-acetylglucosamine 2-epimerase YP_001397589.1 341788 R 360109 CDS YP_001397590.1 153951793 5389747 complement(342968..343972) 1 NC_009707.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666; N-acetylneuraminic acid synthetase 343972 ptmC 5389747 ptmC Campylobacter jejuni subsp. doylei 269.97 N-acetylneuraminic acid synthetase YP_001397590.1 342968 R 360109 CDS YP_001397591.1 153951495 5388925 complement(345933..346961) 1 NC_009707.1 hypothetical protein 346961 5388925 JJD26997_0390 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397591.1 345933 R 360109 CDS YP_001397592.1 153951752 5389349 complement(347021..347689) 1 NC_009707.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase domain-containing protein 347689 5389349 JJD26997_0391 Campylobacter jejuni subsp. doylei 269.97 methyltransferase domain-containing protein YP_001397592.1 347021 R 360109 CDS YP_001397593.1 153952286 5388694 complement(347686..348405) 1 NC_009707.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase domain-containing protein 348405 5388694 JJD26997_0392 Campylobacter jejuni subsp. doylei 269.97 methyltransferase domain-containing protein YP_001397593.1 347686 R 360109 CDS YP_001397594.1 153951095 5389340 complement(348449..349591) 1 NC_009707.1 identified by match to protein family HMM PF01041; aminotransferase 349591 5389340 JJD26997_0393 Campylobacter jejuni subsp. doylei 269.97 aminotransferase YP_001397594.1 348449 R 360109 CDS YP_001397595.1 153952532 5389121 complement(349584..350555) 1 NC_009707.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 350555 5389121 JJD26997_0394 Campylobacter jejuni subsp. doylei 269.97 NAD-dependent epimerase/dehydratase family protein YP_001397595.1 349584 R 360109 CDS YP_001397596.1 153951243 5390508 complement(352484..353515) 1 NC_009707.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666; N-acetylneuraminic acid synthetase 353515 5390508 JJD26997_0397 Campylobacter jejuni subsp. doylei 269.97 N-acetylneuraminic acid synthetase YP_001397596.1 352484 R 360109 CDS YP_001397597.1 153951966 5390149 353665..354801 1 NC_009707.1 flagellin modification protein, PseA 354801 5390149 JJD26997_0398 Campylobacter jejuni subsp. doylei 269.97 flagellin modification protein, PseA YP_001397597.1 353665 D 360109 CDS YP_001397598.1 153952021 5389409 354786..355403 1 NC_009707.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 355403 hisH 5389409 hisH Campylobacter jejuni subsp. doylei 269.97 imidazole glycerol phosphate synthase subunit HisH YP_001397598.1 354786 D 360109 CDS YP_001397599.1 153952216 5389111 355404..356150 1 NC_009707.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamide and glutamine to imidazole-glycerolphosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 356150 hisF-1 5389111 hisF-1 Campylobacter jejuni subsp. doylei 269.97 imidazole glycerol phosphate synthase subunit HisF YP_001397599.1 355404 D 360109 CDS YP_001397600.1 153952517 5390361 complement(356115..356588) 1 NC_009707.1 identified by match to protein family HMM PF00583; acetyltransferase 356588 5390361 JJD26997_0400 Campylobacter jejuni subsp. doylei 269.97 acetyltransferase YP_001397600.1 356115 R 360109 CDS YP_001397601.1 153951014 5389935 complement(356585..357409) 1 NC_009707.1 putative flagellar protein 357409 5389935 JJD26997_0402 Campylobacter jejuni subsp. doylei 269.97 putative flagellar protein YP_001397601.1 356585 R 360109 CDS YP_001397602.1 153951192 5390106 complement(358125..358799) 1 NC_009707.1 putative flagellin modification protein FlmE 358799 5390106 JJD26997_0404 Campylobacter jejuni subsp. doylei 269.97 putative flagellin modification protein FlmE YP_001397602.1 358125 R 360109 CDS YP_001397603.1 153952545 5389276 complement(358812..359456) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 359456 5389276 JJD26997_0405 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397603.1 358812 R 360109 CDS YP_001397604.1 153951798 5390097 complement(359486..360178) 1 NC_009707.1 identified by match to protein family HMM PF00483; match to protein family HMM PF02348; acylneuraminate cytidylyltransferase 360178 5390097 JJD26997_0406 Campylobacter jejuni subsp. doylei 269.97 acylneuraminate cytidylyltransferase YP_001397604.1 359486 R 360109 CDS YP_001397605.1 153951119 5390295 360270..361502 1 NC_009707.1 hypothetical protein 361502 5390295 JJD26997_0407 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397605.1 360270 D 360109 CDS YP_001397606.1 153952150 5390495 362721..363935 1 NC_009707.1 hypothetical protein 363935 5390495 JJD26997_0410 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397606.1 362721 D 360109 CDS YP_001397607.1 153951932 5389668 363957..365027 1 NC_009707.1 hypothetical protein 365027 5389668 JJD26997_0412 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397607.1 363957 D 360109 CDS YP_001397608.1 153951194 5389833 complement(365024..365251) 1 NC_009707.1 putative acyl carrier protein 365251 5389833 JJD26997_0411 Campylobacter jejuni subsp. doylei 269.97 putative acyl carrier protein YP_001397608.1 365024 R 360109 CDS YP_001397609.1 153951721 5388773 complement(365965..367473) 1 NC_009707.1 identified by match to protein family HMM PF00501; amino acid adenylation domain-containing protein 367473 5388773 JJD26997_0415 Campylobacter jejuni subsp. doylei 269.97 amino acid adenylation domain-containing protein YP_001397609.1 365965 R 360109 CDS YP_001397610.1 153952489 5390544 367534..368760 1 NC_009707.1 hypothetical protein 368760 5390544 JJD26997_0416 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397610.1 367534 D 360109 CDS YP_001397611.1 153951300 5389984 complement(369999..370220) 1 NC_009707.1 putative acyl carrier protein 370220 5389984 JJD26997_0419 Campylobacter jejuni subsp. doylei 269.97 putative acyl carrier protein YP_001397611.1 369999 R 360109 CDS YP_001397612.1 153951808 5390554 complement(370220..371281) 1 NC_009707.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; paralogs which do not contain the N-X-R ACP-binding site motif; 3-oxoacyl-ACP synthase 371281 5390554 JJD26997_0420 Campylobacter jejuni subsp. doylei 269.97 3-oxoacyl-ACP synthase YP_001397612.1 370220 R 360109 CDS YP_001397613.1 153952465 5390596 complement(371271..372833) 1 NC_009707.1 identified by match to protein family HMM TIGR01681; match to protein family HMM TIGR01686; HAD family phosphatase 372833 5390596 JJD26997_0421 Campylobacter jejuni subsp. doylei 269.97 HAD family phosphatase YP_001397613.1 371271 R 360109 CDS YP_001397614.1 153951715 5389285 complement(372830..373246) 1 NC_009707.1 hypothetical protein 373246 5389285 JJD26997_0422 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397614.1 372830 R 360109 CDS YP_001397615.1 153952280 5388837 complement(373239..374132) 1 NC_009707.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase domain-containing protein 374132 5388837 JJD26997_0423 Campylobacter jejuni subsp. doylei 269.97 methyltransferase domain-containing protein YP_001397615.1 373239 R 360109 CDS YP_001397616.1 153951557 5389589 complement(374129..374359) 1 NC_009707.1 acyl carrier protein 374359 5389589 JJD26997_0424 Campylobacter jejuni subsp. doylei 269.97 acyl carrier protein YP_001397616.1 374129 R 360109 CDS YP_001397617.1 153951343 5390535 complement(375201..375992) 1 NC_009707.1 hypothetical protein 375992 5390535 JJD26997_0426 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397617.1 375201 R 360109 CDS YP_001397618.1 153952058 5390437 complement(375989..377296) 1 NC_009707.1 hypothetical protein 377296 5390437 JJD26997_0427 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397618.1 375989 R 360109 CDS YP_001397619.1 153951712 5389273 complement(377289..378419) 1 NC_009707.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212; aminotransferase 378419 5389273 JJD26997_0428 Campylobacter jejuni subsp. doylei 269.97 aminotransferase YP_001397619.1 377289 R 360109 CDS YP_001397620.1 153951236 5389005 complement(378421..379425) 1 NC_009707.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; polysaccharide biosynthesis protein 379425 flmA 5389005 flmA Campylobacter jejuni subsp. doylei 269.97 polysaccharide biosynthesis protein YP_001397620.1 378421 R 360109 CDS YP_001397621.1 153951665 5388743 complement(379475..380035) 1 NC_009707.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 380035 dcd 5388743 dcd Campylobacter jejuni subsp. doylei 269.97 deoxycytidine triphosphate deaminase YP_001397621.1 379475 R 360109 CDS YP_001397622.1 153952169 5389082 380180..380635 1 NC_009707.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 380635 accB 5389082 accB Campylobacter jejuni subsp. doylei 269.97 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001397622.1 380180 D 360109 CDS YP_001397623.1 153951320 5390389 380637..381968 1 NC_009707.1 biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase 381968 accC-2 5390389 accC-2 Campylobacter jejuni subsp. doylei 269.97 biotin carboxylase YP_001397623.1 380637 D 360109 CDS YP_001397624.1 153951819 5389693 complement(382003..382818) 1 NC_009707.1 identified by match to protein family HMM PF09312; hypothetical protein 382818 5389693 JJD26997_0433 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397624.1 382003 R 360109 CDS YP_001397625.1 153951105 5389780 382883..384274 1 NC_009707.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 384274 gltX 5389780 gltX Campylobacter jejuni subsp. doylei 269.97 glutamyl-tRNA synthetase YP_001397625.1 382883 D 360109 CDS YP_001397626.1 153951838 5390120 384276..385511 1 NC_009707.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme, truncation 385511 5390120 JJD26997_0435 Campylobacter jejuni subsp. doylei 269.97 NADP-dependent malic enzyme, truncation YP_001397626.1 384276 D 360109 CDS YP_001397627.1 153950941 5388682 386137..386808 1 NC_009707.1 identified by match to protein family HMM PF02621; hypothetical protein 386808 5388682 JJD26997_0440 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397627.1 386137 D 360109 CDS YP_001397628.1 153951960 5390351 complement(386805..387455) 1 NC_009707.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; putative potassium uptake protein TrkA 387455 5390351 JJD26997_0439 Campylobacter jejuni subsp. doylei 269.97 putative potassium uptake protein TrkA YP_001397628.1 386805 R 360109 CDS YP_001397629.1 153952224 5390049 complement(387466..388809) 1 NC_009707.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; TrkH family potassium uptake protein 388809 5390049 JJD26997_0441 Campylobacter jejuni subsp. doylei 269.97 TrkH family potassium uptake protein YP_001397629.1 387466 R 360109 CDS YP_001397630.1 153951567 5388735 390441..391409 1 NC_009707.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase A 391409 5388735 JJD26997_0445 Campylobacter jejuni subsp. doylei 269.97 ribosomal large subunit pseudouridine synthase A YP_001397630.1 390441 D 360109 CDS YP_001397631.1 153951256 5389957 391357..392586 1 NC_009707.1 identified by match to protein family HMM PF00041; fibronectin type III domain-containing protein 392586 5389957 JJD26997_0446 Campylobacter jejuni subsp. doylei 269.97 fibronectin type III domain-containing protein YP_001397631.1 391357 D 360109 CDS YP_001397632.1 153951651 5389147 392586..393764 1 NC_009707.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 393764 trmB 5389147 trmB Campylobacter jejuni subsp. doylei 269.97 tRNA (guanine-N(7)-)-methyltransferase YP_001397632.1 392586 D 360109 CDS YP_001397633.1 153952611 5389652 393826..394491 1 NC_009707.1 identified by match to protein family HMM PF00005; lipoprotein releasing system ATP-binding protein LolD 394491 lolD 5389652 lolD Campylobacter jejuni subsp. doylei 269.97 lipoprotein releasing system ATP-binding protein LolD YP_001397633.1 393826 D 360109 CDS YP_001397634.1 153951028 5388674 394517..395284 1 NC_009707.1 cell division protein FtsX 395284 5388674 JJD26997_0449 Campylobacter jejuni subsp. doylei 269.97 cell division protein FtsX YP_001397634.1 394517 D 360109 CDS YP_001397635.1 153951727 5388739 395281..396474 1 NC_009707.1 identified by match to protein family HMM PF01551; M24/M37 family peptidase 396474 5388739 JJD26997_0450 Campylobacter jejuni subsp. doylei 269.97 M24/M37 family peptidase YP_001397635.1 395281 D 360109 CDS YP_001397636.1 153952363 5390014 396526..397245 1 NC_009707.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 397245 pyrH 5390014 pyrH Campylobacter jejuni subsp. doylei 269.97 uridylate kinase YP_001397636.1 396526 D 360109 CDS YP_001397637.1 153951415 5388854 397256..397480 1 NC_009707.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 397480 rpoZ 5388854 rpoZ Campylobacter jejuni subsp. doylei 269.97 DNA-directed RNA polymerase subunit omega YP_001397637.1 397256 D 360109 CDS YP_001397638.1 153952206 5388628 397488..399659 1 NC_009707.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; RelA/SpoT family protein 399659 5388628 JJD26997_0453 Campylobacter jejuni subsp. doylei 269.97 RelA/SpoT family protein YP_001397638.1 397488 D 360109 CDS YP_001397639.1 153951241 5389477 399671..400876 1 NC_009707.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 400876 tyrS 5389477 tyrS Campylobacter jejuni subsp. doylei 269.97 tyrosyl-tRNA synthetase YP_001397639.1 399671 D 360109 CDS YP_001397640.1 153951979 5389000 400873..401964 1 NC_009707.1 identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase 401964 5389000 JJD26997_0455 Campylobacter jejuni subsp. doylei 269.97 2-nitropropane dioxygenase YP_001397640.1 400873 D 360109 CDS YP_001397641.1 153951049 5390485 401964..403943 1 NC_009707.1 identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 403943 5390485 JJD26997_0456 Campylobacter jejuni subsp. doylei 269.97 N-acetylmuramoyl-L-alanine amidase YP_001397641.1 401964 D 360109 CDS YP_001397642.1 153951661 5388890 403940..405781 1 NC_009707.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 405781 mnmC 5388890 mnmC Campylobacter jejuni subsp. doylei 269.97 5-methylaminomethyl-2-thiouridine methyltransferase YP_001397642.1 403940 D 360109 CDS YP_001397643.1 153951982 5388831 405901..407040 1 NC_009707.1 identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; quinone-reactive Ni/Fe-hydrogenase, small subunit 407040 hydA 5388831 hydA Campylobacter jejuni subsp. doylei 269.97 quinone-reactive Ni/Fe-hydrogenase, small subunit YP_001397643.1 405901 D 360109 CDS YP_001397644.1 153951533 5389929 407043..408758 1 NC_009707.1 identified by match to protein family HMM PF00374; quinone-reactive Ni/Fe-hydrogenase, large subunit 408758 hydB 5389929 hydB Campylobacter jejuni subsp. doylei 269.97 quinone-reactive Ni/Fe-hydrogenase, large subunit YP_001397644.1 407043 D 360109 CDS YP_001397645.1 153952637 5389063 408745..409461 1 NC_009707.1 identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit 409461 hydC 5389063 hydC Campylobacter jejuni subsp. doylei 269.97 quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit YP_001397645.1 408745 D 360109 CDS YP_001397646.1 153952404 5389549 409458..409994 1 NC_009707.1 identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; hydrogenase maturation protease HydD 409994 hydD 5389549 hydD Campylobacter jejuni subsp. doylei 269.97 hydrogenase maturation protease HydD YP_001397646.1 409458 D 360109 CDS YP_001397647.1 153951682 5388662 complement(409991..410563) 1 NC_009707.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 410563 recR 5388662 recR Campylobacter jejuni subsp. doylei 269.97 recombination protein RecR YP_001397647.1 409991 R 360109 CDS YP_001397648.1 153951530 5390478 complement(410563..411729) 1 NC_009707.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 411729 racS 5390478 racS Campylobacter jejuni subsp. doylei 269.97 sensor histidine kinase YP_001397648.1 410563 R 360109 CDS YP_001397649.1 153952254 5389676 complement(411795..412466) 1 NC_009707.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 412466 racR 5389676 racR Campylobacter jejuni subsp. doylei 269.97 DNA-binding response regulator YP_001397649.1 411795 R 360109 CDS YP_001397650.1 153952166 5389346 412620..413744 1 NC_009707.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 413744 dnaJ-2 5389346 dnaJ-2 Campylobacter jejuni subsp. doylei 269.97 chaperone protein DnaJ YP_001397650.1 412620 D 360109 CDS YP_001397651.1 153951167 5389914 complement(413861..415183) 1 NC_009707.1 identified by match to protein family HMM PF05538; major outer membrane protein 415183 porA 5389914 porA Campylobacter jejuni subsp. doylei 269.97 major outer membrane protein YP_001397651.1 413861 R 360109 CDS YP_001397652.1 153951164 5388914 complement(415435..415890) 1 NC_009707.1 identified by match to protein family HMM PF01451; low molecular weight phosphotyrosine protein phosphatase family protein 415890 5388914 JJD26997_0467 Campylobacter jejuni subsp. doylei 269.97 low molecular weight phosphotyrosine protein phosphatase family protein YP_001397652.1 415435 R 360109 CDS YP_001397653.1 153952030 5390453 415944..417128 1 NC_009707.1 identified by match to protein family HMM PF07690; multidrug resistance efflux transporter 417128 5390453 JJD26997_0468 Campylobacter jejuni subsp. doylei 269.97 multidrug resistance efflux transporter YP_001397653.1 415944 D 360109 CDS YP_001397654.1 153952181 5390095 417147..417809 1 NC_009707.1 hypothetical protein 417809 5390095 JJD26997_0470 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397654.1 417147 D 360109 CDS YP_001397655.1 153951279 5388740 complement(417806..418015) 1 NC_009707.1 identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013; hypothetical protein 418015 5388740 JJD26997_0469 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397655.1 417806 R 360109 CDS YP_001397656.1 153951695 5388689 complement(418073..418555) 1 NC_009707.1 identified by match to protein family HMM PF03167; hypothetical protein 418555 5388689 JJD26997_0471 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397656.1 418073 R 360109 CDS YP_001397657.1 153951894 5388770 complement(418552..420708) 1 NC_009707.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 420708 pnp 5388770 pnp Campylobacter jejuni subsp. doylei 269.97 polynucleotide phosphorylase/polyadenylase YP_001397657.1 418552 R 360109 CDS YP_001397658.1 153952012 5388951 complement(420778..422805) 1 NC_009707.1 identified by match to protein family HMM PF04453; putative organic solvent tolerance protein 422805 5388951 JJD26997_0473 Campylobacter jejuni subsp. doylei 269.97 putative organic solvent tolerance protein YP_001397658.1 420778 R 360109 CDS YP_001397659.1 153952525 5390070 complement(422816..423268) 1 NC_009707.1 identified by match to protein family HMM PF06271; hypothetical protein 423268 5390070 JJD26997_0474 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397659.1 422816 R 360109 CDS YP_001397660.1 153952220 5389629 complement(423265..424515) 1 NC_009707.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 424515 purD 5389629 purD Campylobacter jejuni subsp. doylei 269.97 phosphoribosylamine--glycine ligase YP_001397660.1 423265 R 360109 CDS YP_001397661.1 153950998 5388817 complement(424754..426214) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 426214 5388817 JJD26997_0476 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397661.1 424754 R 360109 CDS YP_001397662.1 153952329 5390587 complement(426300..427835) 1 NC_009707.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 427835 guaA 5390587 guaA Campylobacter jejuni subsp. doylei 269.97 GMP synthase YP_001397662.1 426300 R 360109 CDS YP_001397663.1 153951187 5388602 complement(427839..427970) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 427970 5388602 JJD26997_0478 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397663.1 427839 R 360109 CDS YP_001397664.1 153952552 5390218 427974..428468 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 428468 5390218 JJD26997_0479 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397664.1 427974 D 360109 CDS YP_001397665.1 153951039 5389194 428461..430263 1 NC_009707.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 430263 uvrC 5389194 uvrC Campylobacter jejuni subsp. doylei 269.97 excinuclease ABC subunit C YP_001397665.1 428461 D 360109 CDS YP_001397666.1 153952310 5389389 430265..431452 1 NC_009707.1 hypothetical protein 431452 5389389 JJD26997_0481 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397666.1 430265 D 360109 CDS YP_001397667.1 153951588 5389761 complement(431457..432359) 1 NC_009707.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 432359 5389761 JJD26997_0482 Campylobacter jejuni subsp. doylei 269.97 radical SAM domain-containing protein YP_001397667.1 431457 R 360109 CDS YP_001397668.1 153952657 5390573 complement(432356..433378) 1 NC_009707.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 433378 hemE 5390573 hemE Campylobacter jejuni subsp. doylei 269.97 uroporphyrinogen decarboxylase YP_001397668.1 432356 R 360109 CDS YP_001397669.1 153952429 5390456 complement(433935..435134) 1 NC_009707.1 identified by match to protein family HMM PF07690; putative transporter 435134 5390456 JJD26997_0485 Campylobacter jejuni subsp. doylei 269.97 putative transporter YP_001397669.1 433935 R 360109 CDS YP_001397670.1 153951596 5390425 complement(435180..436277) 1 NC_009707.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 436277 pdxA 5390425 pdxA Campylobacter jejuni subsp. doylei 269.97 4-hydroxythreonine-4-phosphate dehydrogenase YP_001397670.1 435180 R 360109 CDS YP_001397671.1 153951465 5389123 complement(436274..437047) 1 NC_009707.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 437047 pdxJ 5389123 pdxJ Campylobacter jejuni subsp. doylei 269.97 pyridoxine 5'-phosphate synthase YP_001397671.1 436274 R 360109 CDS YP_001397672.1 153952212 5389143 437103..438077 1 NC_009707.1 identified by match to protein family HMM PF02541; Ppx/GppA family phosphatase 438077 5389143 JJD26997_0489 Campylobacter jejuni subsp. doylei 269.97 Ppx/GppA family phosphatase YP_001397672.1 437103 D 360109 CDS YP_001397673.1 153952412 5390417 complement(438074..439024) 1 NC_009707.1 identified by match to protein family HMM PF02636; hypothetical protein 439024 5390417 JJD26997_0488 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397673.1 438074 R 360109 CDS YP_001397674.1 153951515 5390560 complement(439021..439821) 1 NC_009707.1 identified by match to protein family HMM PF01551; M24/M37 family peptidase 439821 5390560 JJD26997_0490 Campylobacter jejuni subsp. doylei 269.97 M24/M37 family peptidase YP_001397674.1 439021 R 360109 CDS YP_001397675.1 153952476 5388763 complement(439839..441833) 1 NC_009707.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 441833 glyS 5388763 glyS Campylobacter jejuni subsp. doylei 269.97 glycyl-tRNA synthetase subunit beta YP_001397675.1 439839 R 360109 CDS YP_001397676.1 153951722 5389171 complement(441889..442509) 1 NC_009707.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD-superfamily hydrolase 442509 5389171 JJD26997_0492 Campylobacter jejuni subsp. doylei 269.97 HAD-superfamily hydrolase YP_001397676.1 441889 R 360109 CDS YP_001397677.1 153951725 5388637 complement(442506..442838) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 442838 5388637 JJD26997_0493 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397677.1 442506 R 360109 CDS YP_001397678.1 153950994 5390111 complement(442848..444473) 1 NC_009707.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02254; sodium/hydrogen exchanger family protein 444473 5390111 JJD26997_0494 Campylobacter jejuni subsp. doylei 269.97 sodium/hydrogen exchanger family protein YP_001397678.1 442848 R 360109 CDS YP_001397679.1 153951940 5388598 complement(444480..444854) 1 NC_009707.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 444854 5388598 JJD26997_0495 Campylobacter jejuni subsp. doylei 269.97 MerR family transcriptional regulator YP_001397679.1 444480 R 360109 CDS YP_001397680.1 153951250 5389460 complement(444870..445754) 1 NC_009707.1 identified by match to protein family HMM PF00226; match to protein family HMM PF01556; co-chaperone protein DnaJ 445754 dnaJ-1 5389460 dnaJ-1 Campylobacter jejuni subsp. doylei 269.97 co-chaperone protein DnaJ YP_001397680.1 444870 R 360109 CDS YP_001397681.1 153950970 5389357 445955..447373 1 NC_009707.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; protease DO 447373 htrA 5389357 htrA Campylobacter jejuni subsp. doylei 269.97 protease DO YP_001397681.1 445955 D 360109 CDS YP_001397682.1 153952027 5390042 447449..448123 1 NC_009707.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 448123 5390042 JJD26997_0498 Campylobacter jejuni subsp. doylei 269.97 DNA-binding response regulator YP_001397682.1 447449 D 360109 CDS YP_001397683.1 153951367 5388812 448195..449367 1 NC_009707.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 449367 5388812 JJD26997_0499 Campylobacter jejuni subsp. doylei 269.97 sensor histidine kinase YP_001397683.1 448195 D 360109 CDS YP_001397684.1 153951991 5389514 450312..450428 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 450428 5389514 JJD26997_0503 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397684.1 450312 D 360109 CDS YP_001397685.1 153951896 5390563 450616..451281 1 NC_009707.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 451281 5390563 JJD26997_0504 Campylobacter jejuni subsp. doylei 269.97 DNA-binding response regulator YP_001397685.1 450616 D 360109 CDS YP_001397686.1 153951570 5388731 452680..452844 1 NC_009707.1 hypothetical protein 452844 5388731 JJD26997_0507 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397686.1 452680 D 360109 CDS YP_001397687.1 153951876 5389990 452931..453077 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 453077 5389990 JJD26997_0508 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397687.1 452931 D 360109 CDS YP_001397688.1 153951379 5390215 complement(453112..454749) 1 NC_009707.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 454749 groEL 5390215 groEL Campylobacter jejuni subsp. doylei 269.97 chaperonin GroEL YP_001397688.1 453112 R 360109 CDS YP_001397689.1 153952133 5389481 complement(454770..455030) 1 NC_009707.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 455030 groES 5389481 groES Campylobacter jejuni subsp. doylei 269.97 co-chaperonin GroES YP_001397689.1 454770 R 360109 CDS YP_001397690.1 153952028 5389290 455193..457733 1 NC_009707.1 hypothetical protein 457733 5389290 JJD26997_0511 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397690.1 455193 D 360109 CDS YP_001397691.1 153951102 5390093 457742..458353 1 NC_009707.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 458353 ribE 5390093 ribE Campylobacter jejuni subsp. doylei 269.97 riboflavin synthase subunit alpha YP_001397691.1 457742 D 360109 CDS YP_001397692.1 153952013 5390078 458317..458997 1 NC_009707.1 identified by match to protein family HMM PF02578; hypothetical protein 458997 5390078 JJD26997_0513 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397692.1 458317 D 360109 CDS YP_001397693.1 153952040 5390071 458999..459202 1 NC_009707.1 hypothetical protein 459202 5390071 JJD26997_0515 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397693.1 458999 D 360109 CDS YP_001397694.1 153951372 5389827 complement(459199..460359) 1 NC_009707.1 identified by match to protein family HMM PF01551; M24/M37 family peptidase 460359 5389827 JJD26997_0514 Campylobacter jejuni subsp. doylei 269.97 M24/M37 family peptidase YP_001397694.1 459199 R 360109 CDS YP_001397695.1 153951120 5390326 460481..461206 1 NC_009707.1 hypothetical protein 461206 5390326 JJD26997_0516 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397695.1 460481 D 360109 CDS YP_001397696.1 153952228 5389323 461209..462591 1 NC_009707.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD 462591 glcD 5389323 glcD Campylobacter jejuni subsp. doylei 269.97 glycolate oxidase subunit GlcD YP_001397696.1 461209 D 360109 CDS YP_001397697.1 153951615 5388822 462595..463425 1 NC_009707.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; YihY family protein 463425 5388822 JJD26997_0518 Campylobacter jejuni subsp. doylei 269.97 YihY family protein YP_001397697.1 462595 D 360109 CDS YP_001397698.1 153951115 5388676 complement(464604..465161) 1 NC_009707.1 identified by match to protein family HMM PF09335; DedA family protein 465161 5388676 JJD26997_0519 Campylobacter jejuni subsp. doylei 269.97 DedA family protein YP_001397698.1 464604 R 360109 CDS YP_001397699.1 153951414 5389542 complement(465170..466723) 1 NC_009707.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 466723 5389542 JJD26997_0520 Campylobacter jejuni subsp. doylei 269.97 phosphodiesterase YP_001397699.1 465170 R 360109 CDS YP_001397700.1 153951302 5388806 467353..467910 1 NC_009707.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; putative lipoprotein 467910 5388806 JJD26997_0521 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001397700.1 467353 D 360109 CDS YP_001397701.1 153951547 5389847 467910..468776 1 NC_009707.1 identified by match to protein family HMM PF00448; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 468776 ftsY 5389847 ftsY Campylobacter jejuni subsp. doylei 269.97 signal recognition particle-docking protein FtsY YP_001397701.1 467910 D 360109 CDS YP_001397702.1 153951245 5389812 468852..469010 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 469010 5389812 JJD26997_0523 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397702.1 468852 D 360109 CDS YP_001397703.1 153951878 5389450 470792..472132 1 NC_009707.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 472132 radA 5389450 radA Campylobacter jejuni subsp. doylei 269.97 DNA repair protein RadA YP_001397703.1 470792 D 360109 CDS YP_001397704.1 153952326 5390473 472202..472882 1 NC_009707.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 472882 atpB 5390473 atpB Campylobacter jejuni subsp. doylei 269.97 F0F1 ATP synthase subunit A YP_001397704.1 472202 D 360109 CDS YP_001397705.1 153951782 5389399 complement(473055..473903) 1 NC_009707.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase 473903 metF 5389399 metF Campylobacter jejuni subsp. doylei 269.97 5,10-methylenetetrahydrofolate reductase YP_001397705.1 473055 R 360109 CDS YP_001397706.1 153952080 5390187 complement(473913..476177) 1 NC_009707.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 476177 metE 5390187 metE Campylobacter jejuni subsp. doylei 269.97 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001397706.1 473913 R 360109 CDS YP_001397707.1 153951502 5388909 complement(476200..476970) 1 NC_009707.1 identified by match to protein family HMM PF03180; NLPA family lipoprotein 476970 5388909 JJD26997_0529 Campylobacter jejuni subsp. doylei 269.97 NLPA family lipoprotein YP_001397707.1 476200 R 360109 CDS YP_001397708.1 153951842 5388725 complement(476980..477972) 1 NC_009707.1 identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 477972 5388725 JJD26997_0530 Campylobacter jejuni subsp. doylei 269.97 2OG-Fe(II) oxygenase YP_001397708.1 476980 R 360109 CDS YP_001397709.1 153951890 5390444 complement(478283..478777) 1 NC_009707.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 478777 luxS 5390444 luxS Campylobacter jejuni subsp. doylei 269.97 S-ribosylhomocysteinase YP_001397709.1 478283 R 360109 CDS YP_001397710.1 153951134 5388850 478892..480310 1 NC_009707.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 480310 gatB 5388850 gatB Campylobacter jejuni subsp. doylei 269.97 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001397710.1 478892 D 360109 CDS YP_001397711.1 153952074 5388668 480310..481203 1 NC_009707.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 481203 gpsA 5388668 gpsA Campylobacter jejuni subsp. doylei 269.97 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001397711.1 480310 D 360109 CDS YP_001397712.1 153951235 5388853 481213..482391 1 NC_009707.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 482391 5388853 JJD26997_0534 Campylobacter jejuni subsp. doylei 269.97 dihydroorotase YP_001397712.1 481213 D 360109 CDS YP_001397713.1 153952385 5389618 complement(482399..483925) 1 NC_009707.1 identified by match to protein family HMM PF01384; phosphate transporter family protein 483925 5389618 JJD26997_0535 Campylobacter jejuni subsp. doylei 269.97 phosphate transporter family protein YP_001397713.1 482399 R 360109 CDS YP_001397714.1 153952485 5389152 complement(484537..485835) 1 NC_009707.1 identified by match to protein family HMM PF00375; C4-dicarboxylate transport protein 485835 dctA 5389152 dctA Campylobacter jejuni subsp. doylei 269.97 C4-dicarboxylate transport protein YP_001397714.1 484537 R 360109 CDS YP_001397715.1 153952258 5389938 486795..488174 1 NC_009707.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 488174 5389938 JJD26997_0539 Campylobacter jejuni subsp. doylei 269.97 methyl-accepting chemotaxis protein YP_001397715.1 486795 D 360109 CDS YP_001397716.1 153951873 5388614 488192..488692 1 NC_009707.1 identified by match to protein family HMM PF08447; methyl-accepting chemotaxis protein 488692 5388614 JJD26997_0540 Campylobacter jejuni subsp. doylei 269.97 methyl-accepting chemotaxis protein YP_001397716.1 488192 D 360109 CDS YP_001397717.1 153951262 5390331 488780..490639 1 NC_009707.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 490639 gidA 5390331 gidA Campylobacter jejuni subsp. doylei 269.97 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001397717.1 488780 D 360109 CDS YP_001397718.1 153952394 5389064 491086..491589 1 NC_009707.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416; ubiquinol--cytochrome c reductase, iron-sulfur subunit 491589 petA 5389064 petA Campylobacter jejuni subsp. doylei 269.97 ubiquinol--cytochrome c reductase, iron-sulfur subunit YP_001397718.1 491086 D 360109 CDS YP_001397719.1 153952423 5389529 491591..492841 1 NC_009707.1 identified by match to protein family HMM PF00032; match to protein family HMM PF00033; ubiquinol--cytochrome c reductase, cytochrome b subunit 492841 petB 5389529 petB Campylobacter jejuni subsp. doylei 269.97 ubiquinol--cytochrome c reductase, cytochrome b subunit YP_001397719.1 491591 D 360109 CDS YP_001397720.1 153951440 5389746 492838..493962 1 NC_009707.1 identified by match to protein family HMM PF00034; ubiquinol--cytochrome c reductase, cytochrome c1 subunit 493962 petC 5389746 petC Campylobacter jejuni subsp. doylei 269.97 ubiquinol--cytochrome c reductase, cytochrome c1 subunit YP_001397720.1 492838 D 360109 CDS YP_001397721.1 153951326 5388679 494090..495253 1 NC_009707.1 identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242; cyclopropane-fatty-acyl-phospholipid synthase 495253 5388679 JJD26997_0546 Campylobacter jejuni subsp. doylei 269.97 cyclopropane-fatty-acyl-phospholipid synthase YP_001397721.1 494090 D 360109 CDS YP_001397722.1 153952052 5388859 495369..496160 1 NC_009707.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 496160 rpsB 5388859 rpsB Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S2 YP_001397722.1 495369 D 360109 CDS YP_001397723.1 153952055 5390333 496160..497233 1 NC_009707.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 497233 tsf 5390333 tsf Campylobacter jejuni subsp. doylei 269.97 elongation factor Ts YP_001397723.1 496160 D 360109 CDS YP_001397724.1 153951318 5389598 497246..497881 1 NC_009707.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 497881 5389598 JJD26997_0549 Campylobacter jejuni subsp. doylei 269.97 ABC transporter ATP-binding protein YP_001397724.1 497246 D 360109 CDS YP_001397725.1 153951433 5389504 497868..498635 1 NC_009707.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 498635 fliR 5389504 fliR Campylobacter jejuni subsp. doylei 269.97 flagellar biosynthesis protein FliR YP_001397725.1 497868 D 360109 CDS YP_001397726.1 153951178 5389370 498692..500002 1 NC_009707.1 hypothetical protein 500002 5389370 JJD26997_0551 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397726.1 498692 D 360109 CDS YP_001397727.1 153951669 5388706 500005..500622 1 NC_009707.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 500622 gmk 5388706 gmk Campylobacter jejuni subsp. doylei 269.97 guanylate kinase YP_001397727.1 500005 D 360109 CDS YP_001397728.1 153951020 5389049 500624..500863 1 NC_009707.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin arginine-targeting protein translocase 500863 5389049 JJD26997_0553 Campylobacter jejuni subsp. doylei 269.97 twin arginine-targeting protein translocase YP_001397728.1 500624 D 360109 CDS YP_001397729.1 153952342 5389789 500875..502467 1 NC_009707.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 502467 argS 5389789 argS Campylobacter jejuni subsp. doylei 269.97 arginyl-tRNA synthetase YP_001397729.1 500875 D 360109 CDS YP_001397730.1 153951348 5390500 complement(502485..502793) 1 NC_009707.1 identified by match to protein family HMM PF00893; SMR family multidrug efflux pump 502793 5390500 JJD26997_0555 Campylobacter jejuni subsp. doylei 269.97 SMR family multidrug efflux pump YP_001397730.1 502485 R 360109 CDS YP_001397731.1 153952125 5389645 complement(502793..503134) 1 NC_009707.1 identified by match to protein family HMM PF00893; SMR family multidrug efflux pump 503134 5389645 JJD26997_0556 Campylobacter jejuni subsp. doylei 269.97 SMR family multidrug efflux pump YP_001397731.1 502793 R 360109 CDS YP_001397732.1 153950953 5389467 503244..503951 1 NC_009707.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 503951 5389467 JJD26997_0557 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397732.1 503244 D 360109 CDS YP_001397733.1 153950978 5389362 503961..504443 1 NC_009707.1 identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 504443 ppiB 5389362 ppiB Campylobacter jejuni subsp. doylei 269.97 peptidyl-prolyl cis-trans isomerase B YP_001397733.1 503961 D 360109 CDS YP_001397734.1 153952187 5390435 505997..506152 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 506152 5390435 JJD26997_0564 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397734.1 505997 D 360109 CDS YP_001397735.1 153952445 5389614 complement(506159..506941) 1 NC_009707.1 identified by match to protein family HMM PF02866; L-lactate dehydrogenase 506941 5389614 JJD26997_0565 Campylobacter jejuni subsp. doylei 269.97 L-lactate dehydrogenase YP_001397735.1 506159 R 360109 CDS YP_001397736.1 153951674 5388767 507374..507613 1 NC_009707.1 hypothetical protein 507613 5388767 JJD26997_0566 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397736.1 507374 D 360109 CDS YP_001397737.1 153951662 5390316 507709..508659 1 NC_009707.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 508659 5390316 JJD26997_0567 Campylobacter jejuni subsp. doylei 269.97 cation efflux family protein YP_001397737.1 507709 D 360109 CDS YP_001397738.1 153952649 5388833 508679..508843 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 508843 5388833 JJD26997_0568 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397738.1 508679 D 360109 CDS YP_001397739.1 153951001 5389886 508843..510942 1 NC_009707.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 510942 5389886 JJD26997_0569 Campylobacter jejuni subsp. doylei 269.97 copper-translocating P-type ATPase YP_001397739.1 508843 D 360109 CDS YP_001397740.1 153951826 5389563 complement(512970..514499) 1 NC_009707.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 514499 dnaX 5389563 dnaX Campylobacter jejuni subsp. doylei 269.97 DNA polymerase III subunits gamma and tau YP_001397740.1 512970 R 360109 CDS YP_001397741.1 153951601 5390584 complement(514503..515801) 1 NC_009707.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 515801 rho 5390584 rho Campylobacter jejuni subsp. doylei 269.97 transcription termination factor Rho YP_001397741.1 514503 R 360109 CDS YP_001397742.1 153951967 5390277 515916..518267 1 NC_009707.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; heavy metal translocating P-type ATPase 518267 5390277 JJD26997_0573 Campylobacter jejuni subsp. doylei 269.97 heavy metal translocating P-type ATPase YP_001397742.1 515916 D 360109 CDS YP_001397743.1 153951059 5389410 518264..518470 1 NC_009707.1 identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847; putative cytochrome oxidase maturation protein, cbb3-type 518470 5389410 JJD26997_0574 Campylobacter jejuni subsp. doylei 269.97 putative cytochrome oxidase maturation protein, cbb3-type YP_001397743.1 518264 D 360109 CDS YP_001397744.1 153951395 5389900 complement(518493..518795) 1 NC_009707.1 identified by match to protein family HMM PF00034; cytochrome c553 518795 cyf 5389900 cyf Campylobacter jejuni subsp. doylei 269.97 cytochrome c553 YP_001397744.1 518493 R 360109 CDS YP_001397745.1 153951278 5389196 518877..519434 1 NC_009707.1 identified by match to protein family HMM PF08645; match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; putative hydrolase 519434 5389196 JJD26997_0576 Campylobacter jejuni subsp. doylei 269.97 putative hydrolase YP_001397745.1 518877 D 360109 CDS YP_001397746.1 153951617 5388688 519435..520388 1 NC_009707.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197; ADP-L-glycero-D-manno-heptose-6-epimerase 520388 waaD 5388688 waaD Campylobacter jejuni subsp. doylei 269.97 ADP-L-glycero-D-manno-heptose-6-epimerase YP_001397746.1 519435 D 360109 CDS YP_001397747.1 153952428 5388678 520381..521766 1 NC_009707.1 identified by match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02198; match to protein family HMM TIGR02199; D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase 521766 hldE 5388678 hldE Campylobacter jejuni subsp. doylei 269.97 D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase YP_001397747.1 520381 D 360109 CDS YP_001397748.1 153951000 5390424 521763..522323 1 NC_009707.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 522323 gmhA-1 5390424 gmhA-1 Campylobacter jejuni subsp. doylei 269.97 phosphoheptose isomerase YP_001397748.1 521763 D 360109 CDS YP_001397749.1 153952416 5388964 522323..523087 1 NC_009707.1 identified by match to protein family HMM PF01755; putative lipooligosaccharide biosynthesis glycosyltransferase 523087 5388964 JJD26997_0581 Campylobacter jejuni subsp. doylei 269.97 putative lipooligosaccharide biosynthesis glycosyltransferase YP_001397749.1 522323 D 360109 CDS YP_001397750.1 153951984 5389562 complement(523073..524023) 1 NC_009707.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195; ADP-heptose--LPS heptosyltransferase II 524023 waaF 5389562 waaF Campylobacter jejuni subsp. doylei 269.97 ADP-heptose--LPS heptosyltransferase II YP_001397750.1 523073 R 360109 CDS YP_001397751.1 153951676 5388574 524081..524899 1 NC_009707.1 identified by match to protein family HMM PF00535; lipooligosaccharide biosynthesis glycosyltransferase 524899 5388574 JJD26997_0582 Campylobacter jejuni subsp. doylei 269.97 lipooligosaccharide biosynthesis glycosyltransferase YP_001397751.1 524081 D 360109 CDS YP_001397752.1 153951442 5389151 524939..526084 1 NC_009707.1 identified by match to protein family HMM PF01501; glycosyl transferase family protein 526084 5389151 JJD26997_0583 Campylobacter jejuni subsp. doylei 269.97 glycosyl transferase family protein YP_001397752.1 524939 D 360109 CDS YP_001397753.1 153952405 5388681 526111..526974 1 NC_009707.1 identified by match to protein family HMM PF00535; beta-1,3-galactosyltransferase 526974 5388681 JJD26997_0585 Campylobacter jejuni subsp. doylei 269.97 beta-1,3-galactosyltransferase YP_001397753.1 526111 D 360109 CDS YP_001397754.1 153952426 5388663 complement(526971..528032) 1 NC_009707.1 identified by match to protein family HMM PF00534; putative glycosyltransferase 528032 5388663 JJD26997_0584 Campylobacter jejuni subsp. doylei 269.97 putative glycosyltransferase YP_001397754.1 526971 R 360109 CDS YP_001397755.1 153951434 5389822 complement(528019..528792) 1 NC_009707.1 identified by match to protein family HMM PF00535; hypothetical protein 528792 5389822 JJD26997_0586 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397755.1 528019 R 360109 CDS YP_001397756.1 153951928 5389371 complement(528789..529676) 1 NC_009707.1 acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; essential for survival; plays a role in cell responses to environmental changes; lipid A biosynthesis lauroyl acyltransferase 529676 waaM 5389371 waaM Campylobacter jejuni subsp. doylei 269.97 lipid A biosynthesis lauroyl acyltransferase YP_001397756.1 528789 R 360109 CDS YP_001397757.1 153951172 5389406 complement(529666..530694) 1 NC_009707.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193; lipopolysaccharide heptosyltransferase I 530694 waaC 5389406 waaC Campylobacter jejuni subsp. doylei 269.97 lipopolysaccharide heptosyltransferase I YP_001397757.1 529666 R 360109 CDS YP_001397758.1 153951632 5389700 530757..531551 1 NC_009707.1 polysaccharide biosynthesis protein 531551 wlaX 5389700 wlaX Campylobacter jejuni subsp. doylei 269.97 polysaccharide biosynthesis protein YP_001397758.1 530757 D 360109 CDS YP_001397759.1 153952586 5388830 531610..532596 1 NC_009707.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 532596 galE 5388830 galE Campylobacter jejuni subsp. doylei 269.97 UDP-glucose 4-epimerase YP_001397759.1 531610 D 360109 CDS YP_001397760.1 153951013 5390183 532590..534284 1 NC_009707.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease 534284 wlaB 5390183 wlaB Campylobacter jejuni subsp. doylei 269.97 ABC transporter permease YP_001397760.1 532590 D 360109 CDS YP_001397761.1 153951965 5390593 534281..535360 1 NC_009707.1 identified by match to protein family HMM PF00534; general glycosylation pathway protein 535360 pglH 5390593 pglH Campylobacter jejuni subsp. doylei 269.97 general glycosylation pathway protein YP_001397761.1 534281 D 360109 CDS YP_001397762.1 153951472 5389139 535353..536282 1 NC_009707.1 identified by match to protein family HMM PF00535; general glycosylation pathway protein 536282 pglI 5389139 pglI Campylobacter jejuni subsp. doylei 269.97 general glycosylation pathway protein YP_001397762.1 535353 D 360109 CDS YP_001397763.1 153952440 5388580 536270..537367 1 NC_009707.1 identified by match to protein family HMM PF00534; general glycosylation pathway protein 537367 pglJ 5388580 pglJ Campylobacter jejuni subsp. doylei 269.97 general glycosylation pathway protein YP_001397763.1 536270 D 360109 CDS YP_001397764.1 153951707 5390601 537371..539512 1 NC_009707.1 identified by match to protein family HMM PF02516; general glycosylation pathway protein 539512 pglB 5390601 pglB Campylobacter jejuni subsp. doylei 269.97 general glycosylation pathway protein YP_001397764.1 537371 D 360109 CDS YP_001397765.1 153950979 5389309 539523..540653 1 NC_009707.1 identified by match to protein family HMM PF00534; general glycosylation pathway protein 540653 pglA 5389309 pglA Campylobacter jejuni subsp. doylei 269.97 general glycosylation pathway protein YP_001397765.1 539523 D 360109 CDS YP_001397766.1 153952000 5389785 540646..541248 1 NC_009707.1 identified by match to protein family HMM PF02397; general glycosylation pathway protein 541248 pglC 5389785 pglC Campylobacter jejuni subsp. doylei 269.97 general glycosylation pathway protein YP_001397766.1 540646 D 360109 CDS YP_001397767.1 153951161 5389538 541214..541825 1 NC_009707.1 general glycosylation pathway protein 541825 pglD 5389538 pglD Campylobacter jejuni subsp. doylei 269.97 general glycosylation pathway protein YP_001397767.1 541214 D 360109 CDS YP_001397768.1 153952136 5390604 541922..543082 1 NC_009707.1 identified by match to protein family HMM PF01041; general glycosylation pathway protein 543082 pglE 5390604 pglE Campylobacter jejuni subsp. doylei 269.97 general glycosylation pathway protein YP_001397768.1 541922 D 360109 CDS YP_001397769.1 153952487 5388629 544854..545747 1 NC_009707.1 general glycosylation pathway protein 545747 pglG 5388629 pglG Campylobacter jejuni subsp. doylei 269.97 general glycosylation pathway protein YP_001397769.1 544854 D 360109 CDS YP_001397770.1 153952086 5390359 545860..546252 1 NC_009707.1 identified by match to protein family HMM PF00072; chemotaxis protein CheY 546252 cheY 5390359 cheY Campylobacter jejuni subsp. doylei 269.97 chemotaxis protein CheY YP_001397770.1 545860 D 360109 CDS YP_001397771.1 153951432 5389165 546275..547123 1 NC_009707.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 547123 prmA 5389165 prmA Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L11 methyltransferase YP_001397771.1 546275 D 360109 CDS YP_001397772.1 153952359 5390164 547123..549060 1 NC_009707.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; cell division protein FtsH 549060 ftsH 5390164 ftsH Campylobacter jejuni subsp. doylei 269.97 cell division protein FtsH YP_001397772.1 547123 D 360109 CDS YP_001397773.1 153951613 5389368 549057..549674 1 NC_009707.1 identified by match to protein family HMM PF02666; phosphatidylserine decarboxylase-related protein 549674 5389368 JJD26997_0606 Campylobacter jejuni subsp. doylei 269.97 phosphatidylserine decarboxylase-related protein YP_001397773.1 549057 D 360109 CDS YP_001397774.1 153951741 5390609 549684..550412 1 NC_009707.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 550412 pssA 5390609 pssA Campylobacter jejuni subsp. doylei 269.97 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001397774.1 549684 D 360109 CDS YP_001397775.1 153952554 5388716 complement(550403..551200) 1 NC_009707.1 identified by match to protein family HMM PF04305; hypothetical protein 551200 5388716 JJD26997_0607 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397775.1 550403 R 360109 CDS YP_001397776.1 153951037 5389665 551290..551649 1 NC_009707.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; a fusion protein of this enzyme with MsrA and thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; methionine sulfoxide reductase B 551649 msrB 5389665 msrB Campylobacter jejuni subsp. doylei 269.97 methionine sulfoxide reductase B YP_001397776.1 551290 D 360109 CDS YP_001397777.1 153951158 5388952 552345..553634 1 NC_009707.1 identified by match to protein family HMM PF00015; match to protein family HMM PF08447; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 553634 5388952 JJD26997_0612 Campylobacter jejuni subsp. doylei 269.97 methyl-accepting chemotaxis protein YP_001397777.1 552345 D 360109 CDS YP_001397778.1 153952638 5390530 complement(553657..554304) 1 NC_009707.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 554304 aat 5390530 aat Campylobacter jejuni subsp. doylei 269.97 leucyl/phenylalanyl-tRNA--protein transferase YP_001397778.1 553657 R 360109 CDS YP_001397779.1 153951874 5389550 complement(554279..556408) 1 NC_009707.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639; ATP-dependent Clp protease, ATP-binding subunit ClpA 556408 clpA 5389550 clpA Campylobacter jejuni subsp. doylei 269.97 ATP-dependent Clp protease, ATP-binding subunit ClpA YP_001397779.1 554279 R 360109 CDS YP_001397780.1 153952414 5390213 complement(556405..556695) 1 NC_009707.1 identified by match to protein family HMM PF02617; hypothetical protein 556695 5390213 JJD26997_0615 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397780.1 556405 R 360109 CDS YP_001397781.1 153951545 5389560 complement(556695..557297) 1 NC_009707.1 thioredoxin domain-containing protein 557297 5389560 JJD26997_0616 Campylobacter jejuni subsp. doylei 269.97 thioredoxin domain-containing protein YP_001397781.1 556695 R 360109 CDS YP_001397782.1 153952300 5390493 complement(557309..557761) 1 NC_009707.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 557761 smpB 5390493 smpB Campylobacter jejuni subsp. doylei 269.97 SsrA-binding protein YP_001397782.1 557309 R 360109 CDS YP_001397783.1 153951311 5389382 complement(557758..558525) 1 NC_009707.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 558525 ispE 5389382 ispE Campylobacter jejuni subsp. doylei 269.97 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001397783.1 557758 R 360109 CDS YP_001397784.1 153952570 5390021 complement(558522..558749) 1 NC_009707.1 identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator 558749 csrA 5390021 csrA Campylobacter jejuni subsp. doylei 269.97 carbon storage regulator YP_001397784.1 558522 R 360109 CDS YP_001397785.1 153951551 5390031 complement(558743..559561) 1 NC_009707.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 559561 truB 5390031 truB Campylobacter jejuni subsp. doylei 269.97 tRNA pseudouridine synthase B YP_001397785.1 558743 R 360109 CDS YP_001397786.1 153952234 5389983 complement(559558..561633) 1 NC_009707.1 identified by match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD 561633 5389983 JJD26997_0621 Campylobacter jejuni subsp. doylei 269.97 ATP-dependent DNA helicase UvrD YP_001397786.1 559558 R 360109 CDS YP_001397787.1 153952341 5389432 complement(561630..562025) 1 NC_009707.1 hypothetical protein 562025 5389432 JJD26997_0622 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397787.1 561630 R 360109 CDS YP_001397788.1 153951528 5390499 complement(562061..563782) 1 NC_009707.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR02290; oligoendopeptidase F 563782 pepF 5390499 pepF Campylobacter jejuni subsp. doylei 269.97 oligoendopeptidase F YP_001397788.1 562061 R 360109 CDS YP_001397789.1 153952629 5388785 complement(563786..564673) 1 NC_009707.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 564673 pyrB 5388785 pyrB Campylobacter jejuni subsp. doylei 269.97 aspartate carbamoyltransferase catalytic subunit YP_001397789.1 563786 R 360109 CDS YP_001397790.1 153951067 5389135 complement(564683..565906) 1 NC_009707.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 565906 5389135 JJD26997_0625 Campylobacter jejuni subsp. doylei 269.97 serine/threonine transporter SstT YP_001397790.1 564683 R 360109 CDS YP_001397791.1 153951903 5390339 566046..567242 1 NC_009707.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 567242 metK 5390339 metK Campylobacter jejuni subsp. doylei 269.97 S-adenosylmethionine synthetase YP_001397791.1 566046 D 360109 CDS YP_001397792.1 153951383 5389842 complement(569271..570536) 1 NC_009707.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 570536 lnt 5389842 lnt Campylobacter jejuni subsp. doylei 269.97 apolipoprotein N-acyltransferase YP_001397792.1 569271 R 360109 CDS YP_001397793.1 153952484 5388720 570560..570832 1 NC_009707.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 570832 yajC 5388720 yajC Campylobacter jejuni subsp. doylei 269.97 preprotein translocase subunit YajC YP_001397793.1 570560 D 360109 CDS YP_001397794.1 153951508 5390009 570825..572405 1 NC_009707.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 572405 secD 5390009 secD Campylobacter jejuni subsp. doylei 269.97 preprotein translocase subunit SecD YP_001397794.1 570825 D 360109 CDS YP_001397795.1 153951817 5389395 572405..573376 1 NC_009707.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 573376 secF 5389395 secF Campylobacter jejuni subsp. doylei 269.97 preprotein translocase subunit SecF YP_001397795.1 572405 D 360109 CDS YP_001397796.1 153951097 5390226 573386..575815 1 NC_009707.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 575815 leuS 5390226 leuS Campylobacter jejuni subsp. doylei 269.97 leucyl-tRNA synthetase YP_001397796.1 573386 D 360109 CDS YP_001397797.1 153951565 5389263 575980..576324 1 NC_009707.1 putative lipoprotein 576324 5389263 JJD26997_0633 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001397797.1 575980 D 360109 CDS YP_001397798.1 153951776 5390318 577683..578855 1 NC_009707.1 identified by match to protein family HMM PF08245; match to protein family HMM TIGR01499; folC bifunctional protein 578855 folC 5390318 folC Campylobacter jejuni subsp. doylei 269.97 folC bifunctional protein YP_001397798.1 577683 D 360109 CDS YP_001397799.1 153951074 5389934 579680..580075 1 NC_009707.1 identified by match to protein family HMM PF04519; hypothetical protein 580075 5389934 JJD26997_0637 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397799.1 579680 D 360109 CDS YP_001397800.1 153951893 5388919 580075..583011 1 NC_009707.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580; transcription-repair coupling factor 583011 mfd 5388919 mfd Campylobacter jejuni subsp. doylei 269.97 transcription-repair coupling factor YP_001397800.1 580075 D 360109 CDS YP_001397801.1 153951284 5388687 583013..583774 1 NC_009707.1 identified by match to protein family HMM PF05673; hypothetical protein 583774 5388687 JJD26997_0639 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397801.1 583013 D 360109 CDS YP_001397802.1 153952148 5389869 583771..584457 1 NC_009707.1 identified by match to protein family HMM PF00730; putative endonuclease III 584457 5389869 JJD26997_0640 Campylobacter jejuni subsp. doylei 269.97 putative endonuclease III YP_001397802.1 583771 D 360109 CDS YP_001397803.1 153951985 5389666 584454..585266 1 NC_009707.1 identified by match to protein family HMM PF01256; match to protein family HMM PF08543; match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 585266 thiD 5389666 thiD Campylobacter jejuni subsp. doylei 269.97 phosphomethylpyrimidine kinase YP_001397803.1 584454 D 360109 CDS YP_001397804.1 153951222 5389997 585866..586495 1 NC_009707.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 586495 hemD 5389997 hemD Campylobacter jejuni subsp. doylei 269.97 uroporphyrinogen-III synthase YP_001397804.1 585866 D 360109 CDS YP_001397805.1 153952184 5389331 complement(586492..586944) 1 NC_009707.1 hypothetical protein 586944 5389331 JJD26997_0643 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397805.1 586492 R 360109 CDS YP_001397806.1 153951534 5389986 complement(586941..587603) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 587603 5389986 JJD26997_0645 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397806.1 586941 R 360109 CDS YP_001397807.1 153952253 5389144 complement(587600..587860) 1 NC_009707.1 transformation system protein 587860 ctsT 5389144 ctsT Campylobacter jejuni subsp. doylei 269.97 transformation system protein YP_001397807.1 587600 R 360109 CDS YP_001397808.1 153951724 5389344 complement(587899..588630) 1 NC_009707.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 588630 proC 5389344 proC Campylobacter jejuni subsp. doylei 269.97 pyrroline-5-carboxylate reductase YP_001397808.1 587899 R 360109 CDS YP_001397809.1 153952492 5390110 complement(588630..589019) 1 NC_009707.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 589019 5390110 JJD26997_0648 Campylobacter jejuni subsp. doylei 269.97 flagellar assembly protein FliW YP_001397809.1 588630 R 360109 CDS YP_001397810.1 153951092 5390466 589180..589827 1 NC_009707.1 putative lipoprotein 589827 5390466 JJD26997_0649 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001397810.1 589180 D 360109 CDS YP_001397811.1 153951882 5389131 589844..592219 1 NC_009707.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La 592219 lon 5389131 lon Campylobacter jejuni subsp. doylei 269.97 ATP-dependent protease La YP_001397811.1 589844 D 360109 CDS YP_001397812.1 153951708 5390460 complement(592281..592541) 1 NC_009707.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 592541 rpsR 5390460 rpsR Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S18 YP_001397812.1 592281 R 360109 CDS YP_001397813.1 153951271 5389310 complement(592552..593103) 1 NC_009707.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 593103 ssb 5389310 ssb Campylobacter jejuni subsp. doylei 269.97 single-stranded DNA-binding protein YP_001397813.1 592552 R 360109 CDS YP_001397814.1 153951510 5390549 complement(593112..593489) 1 NC_009707.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 593489 rpsF 5390549 rpsF Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S6 YP_001397814.1 593112 R 360109 CDS YP_001397815.1 153952265 5389397 complement(593576..594436) 1 NC_009707.1 identified by match to protein family HMM PF04393; hypothetical protein 594436 5389397 JJD26997_0654 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397815.1 593576 R 360109 CDS YP_001397816.1 153951719 5388583 complement(594429..595535) 1 NC_009707.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; putative membrane-associated zinc metalloprotease 595535 5388583 JJD26997_0655 Campylobacter jejuni subsp. doylei 269.97 putative membrane-associated zinc metalloprotease YP_001397816.1 594429 R 360109 CDS YP_001397817.1 153952512 5388956 complement(595532..596068) 1 NC_009707.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 596068 pgsA 5388956 pgsA Campylobacter jejuni subsp. doylei 269.97 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001397817.1 595532 R 360109 CDS YP_001397818.1 153951024 5390174 complement(596110..596715) 1 NC_009707.1 identified by match to protein family HMM PF00881; nitroreductase family protein 596715 5390174 JJD26997_0657 Campylobacter jejuni subsp. doylei 269.97 nitroreductase family protein YP_001397818.1 596110 R 360109 CDS YP_001397819.1 153952138 5389288 complement(597834..598922) 1 NC_009707.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage-inducible domain-containing protein 598922 5389288 JJD26997_0661 Campylobacter jejuni subsp. doylei 269.97 competence/damage-inducible domain-containing protein YP_001397819.1 597834 R 360109 CDS YP_001397820.1 153952173 5389689 599018..601771 1 NC_009707.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 601771 ileS 5389689 ileS Campylobacter jejuni subsp. doylei 269.97 isoleucyl-tRNA synthetase YP_001397820.1 599018 D 360109 CDS YP_001397821.1 153951202 5389159 601872..603233 1 NC_009707.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 603233 gatA 5389159 gatA Campylobacter jejuni subsp. doylei 269.97 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001397821.1 601872 D 360109 CDS YP_001397822.1 153952446 5388896 603243..604700 1 NC_009707.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 604700 guaB 5388896 guaB Campylobacter jejuni subsp. doylei 269.97 inosine 5'-monophosphate dehydrogenase YP_001397822.1 603243 D 360109 CDS YP_001397823.1 153951448 5388768 604697..604870 1 NC_009707.1 putative exodeoxyribonuclease VII, small subunit 604870 5388768 JJD26997_0665 Campylobacter jejuni subsp. doylei 269.97 putative exodeoxyribonuclease VII, small subunit YP_001397823.1 604697 D 360109 CDS YP_001397824.1 153952650 5389043 604863..605639 1 NC_009707.1 carbon-nitrogen family hydrolase 605639 5389043 JJD26997_0666 Campylobacter jejuni subsp. doylei 269.97 carbon-nitrogen family hydrolase YP_001397824.1 604863 D 360109 CDS YP_001397825.1 153951401 5389564 607881..608720 1 NC_009707.1 identified by match to protein family HMM PF00795; carbon-nitrogen hydrolase 608720 5389564 JJD26997_0671 Campylobacter jejuni subsp. doylei 269.97 carbon-nitrogen hydrolase YP_001397825.1 607881 D 360109 CDS YP_001397826.1 153952240 5390202 608737..609618 1 NC_009707.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 609618 5390202 JJD26997_0672 Campylobacter jejuni subsp. doylei 269.97 polysaccharide deacetylase family protein YP_001397826.1 608737 D 360109 CDS YP_001397827.1 153952128 5389830 609746..610075 1 NC_009707.1 hypothetical protein 610075 5389830 JJD26997_0673 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397827.1 609746 D 360109 CDS YP_001397828.1 153951139 5389250 610068..611135 1 NC_009707.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; ATP/GTP binding protein 611135 5389250 JJD26997_0674 Campylobacter jejuni subsp. doylei 269.97 ATP/GTP binding protein YP_001397828.1 610068 D 360109 CDS YP_001397829.1 153951909 5390074 612015..612137 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 612137 5390074 JJD26997_0675 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397829.1 612015 D 360109 CDS YP_001397830.1 153951544 5389697 complement(612402..613862) 1 NC_009707.1 identified by match to protein family HMM PF02133; NCS1 nucleoside transporter 613862 5389697 JJD26997_0676 Campylobacter jejuni subsp. doylei 269.97 NCS1 nucleoside transporter YP_001397830.1 612402 R 360109 CDS YP_001397831.1 153952556 5388660 complement(614221..614883) 1 NC_009707.1 identified by match to protein family HMM PF04199; cyclase superfamily protein 614883 5388660 JJD26997_0677 Campylobacter jejuni subsp. doylei 269.97 cyclase superfamily protein YP_001397831.1 614221 R 360109 CDS YP_001397832.1 153951040 5389955 complement(615970..616347) 1 NC_009707.1 putative chemotaxis signal transduction protein 616347 5389955 JJD26997_0679 Campylobacter jejuni subsp. doylei 269.97 putative chemotaxis signal transduction protein YP_001397832.1 615970 R 360109 CDS YP_001397833.1 153951012 5389390 617024..618319 1 NC_009707.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 618319 murC 5389390 murC Campylobacter jejuni subsp. doylei 269.97 UDP-N-acetylmuramate--L-alanine ligase YP_001397833.1 617024 D 360109 CDS YP_001397834.1 153951201 5390289 618312..618662 1 NC_009707.1 hypothetical protein 618662 5390289 JJD26997_0681 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397834.1 618312 D 360109 CDS YP_001397835.1 153952164 5388895 618655..620862 1 NC_009707.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 620862 mutS 5388895 mutS Campylobacter jejuni subsp. doylei 269.97 recombination and DNA strand exchange inhibitor protein YP_001397835.1 618655 D 360109 CDS YP_001397836.1 153951580 5389912 complement(620857..621843) 1 NC_009707.1 hypothetical protein 621843 5389912 JJD26997_0682 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397836.1 620857 R 360109 CDS YP_001397837.1 153951135 5389712 622868..623401 1 NC_009707.1 identified by match to protein family HMM PF02146; NAD-dependent deacetylase 623401 5389712 JJD26997_0686 Campylobacter jejuni subsp. doylei 269.97 NAD-dependent deacetylase YP_001397837.1 622868 D 360109 CDS YP_001397838.1 153952097 5388669 623394..623993 1 NC_009707.1 identified by match to protein family HMM PF01810; amino acid transporter LysE 623993 5388669 JJD26997_0687 Campylobacter jejuni subsp. doylei 269.97 amino acid transporter LysE YP_001397838.1 623394 D 360109 CDS YP_001397839.1 153952252 5388751 623997..625094 1 NC_009707.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 625094 dapE 5388751 dapE Campylobacter jejuni subsp. doylei 269.97 succinyl-diaminopimelate desuccinylase YP_001397839.1 623997 D 360109 CDS YP_001397840.1 153951579 5388788 625104..627167 1 NC_009707.1 identified by match to protein family HMM PF02384; DNA methylase-type I restriction-modification system 627167 5388788 JJD26997_0689 Campylobacter jejuni subsp. doylei 269.97 DNA methylase-type I restriction-modification system YP_001397840.1 625104 D 360109 CDS YP_001397841.1 153951578 5388887 627172..627897 1 NC_009707.1 RlfA 627897 5388887 JJD26997_0690 Campylobacter jejuni subsp. doylei 269.97 RlfA YP_001397841.1 627172 D 360109 CDS YP_001397842.1 153952522 5388886 627897..628448 1 NC_009707.1 hypothetical protein 628448 5388886 JJD26997_0691 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397842.1 627897 D 360109 CDS YP_001397843.1 153951206 5389570 complement(628515..628805) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 628805 5389570 JJD26997_0692 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397843.1 628515 R 360109 CDS YP_001397844.1 153952236 5389683 complement(628927..629526) 1 NC_009707.1 identified by match to protein family HMM PF00565; thermonuclease family protein 629526 5389683 JJD26997_0693 Campylobacter jejuni subsp. doylei 269.97 thermonuclease family protein YP_001397844.1 628927 R 360109 CDS YP_001397845.1 153951031 5389759 complement(629553..629792) 1 NC_009707.1 hypothetical protein 629792 5389759 JJD26997_0694 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397845.1 629553 R 360109 CDS YP_001397846.1 153951986 5390132 complement(630023..630166) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 630166 5390132 JJD26997_0695 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397846.1 630023 R 360109 CDS YP_001397847.1 153951643 5388576 complement(630163..630759) 1 NC_009707.1 hypothetical protein 630759 5388576 JJD26997_0696 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397847.1 630163 R 360109 CDS YP_001397848.1 153952559 5390348 complement(630886..631200) 1 NC_009707.1 transketolase 631200 5390348 JJD26997_0697 Campylobacter jejuni subsp. doylei 269.97 transketolase YP_001397848.1 630886 R 360109 CDS YP_001397849.1 153951869 5389361 complement(633293..633835) 1 NC_009707.1 identified by match to protein family HMM PF00908; dTDP-4-dehydrorhamnose 3,5-epimerase 633835 5389361 JJD26997_0704 Campylobacter jejuni subsp. doylei 269.97 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001397849.1 633293 R 360109 CDS YP_001397850.1 153951155 5389029 complement(633887..634939) 1 NC_009707.1 identified by match to protein family HMM PF01370; GDP-fucose synthetase 634939 5389029 JJD26997_0705 Campylobacter jejuni subsp. doylei 269.97 GDP-fucose synthetase YP_001397850.1 633887 R 360109 CDS YP_001397851.1 153951272 5389947 complement(634932..636044) 1 NC_009707.1 identified by match to protein family HMM PF01370; GDP-fucose synthetase 636044 5389947 JJD26997_0706 Campylobacter jejuni subsp. doylei 269.97 GDP-fucose synthetase YP_001397851.1 634932 R 360109 CDS YP_001397852.1 153952059 5390572 complement(636962..637495) 1 NC_009707.1 identified by match to protein family HMM PF00908; putative nucleotidyl-sugar epimerase 637495 5390572 JJD26997_0709 Campylobacter jejuni subsp. doylei 269.97 putative nucleotidyl-sugar epimerase YP_001397852.1 636962 R 360109 CDS YP_001397853.1 153952555 5388808 complement(637495..638706) 1 NC_009707.1 identified by match to protein family HMM PF01041; WbdK 638706 5388808 JJD26997_0710 Campylobacter jejuni subsp. doylei 269.97 WbdK YP_001397853.1 637495 R 360109 CDS YP_001397854.1 153952175 5389319 complement(638785..640278) 1 NC_009707.1 identified by match to protein family HMM PF01501; glycosyl transferase family protein 640278 5389319 JJD26997_0711 Campylobacter jejuni subsp. doylei 269.97 glycosyl transferase family protein YP_001397854.1 638785 R 360109 CDS YP_001397855.1 153952407 5389161 complement(640280..641854) 1 NC_009707.1 putative capsular polysaccharide biosynthesis protein 641854 5389161 JJD26997_0712 Campylobacter jejuni subsp. doylei 269.97 putative capsular polysaccharide biosynthesis protein YP_001397855.1 640280 R 360109 CDS YP_001397856.1 153951479 5389922 complement(641851..643593) 1 NC_009707.1 putative sugar transferase 643593 5389922 JJD26997_0713 Campylobacter jejuni subsp. doylei 269.97 putative sugar transferase YP_001397856.1 641851 R 360109 CDS YP_001397857.1 153952585 5390512 complement(643594..644169) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 644169 5390512 JJD26997_0714 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397857.1 643594 R 360109 CDS YP_001397858.1 153951755 5389126 complement(644163..645623) 1 NC_009707.1 identified by match to protein family HMM PF00535; galactosyltransferase 645623 5389126 JJD26997_0715 Campylobacter jejuni subsp. doylei 269.97 galactosyltransferase YP_001397858.1 644163 R 360109 CDS YP_001397859.1 153952408 5390521 complement(645620..646966) 1 NC_009707.1 identified by match to protein family HMM PF00535; putative sugar transferase 646966 5390521 JJD26997_0716 Campylobacter jejuni subsp. doylei 269.97 putative sugar transferase YP_001397859.1 645620 R 360109 CDS YP_001397860.1 153951451 5389923 complement(646968..648065) 1 NC_009707.1 identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031; UDP-galactopyranose mutase 648065 glf 5389923 glf Campylobacter jejuni subsp. doylei 269.97 UDP-galactopyranose mutase YP_001397860.1 646968 R 360109 CDS YP_001397861.1 153952593 5388943 complement(648093..649448) 1 NC_009707.1 identified by match to protein family HMM PF00535; putative sugar transferase 649448 5388943 JJD26997_0718 Campylobacter jejuni subsp. doylei 269.97 putative sugar transferase YP_001397861.1 648093 R 360109 CDS YP_001397862.1 153951664 5390364 complement(649445..650440) 1 NC_009707.1 identified by match to protein family HMM PF00535; putative sugar transferase 650440 5390364 JJD26997_0719 Campylobacter jejuni subsp. doylei 269.97 putative sugar transferase YP_001397862.1 649445 R 360109 CDS YP_001397863.1 153951950 5389081 650518..651102 1 NC_009707.1 identified by match to protein family HMM PF01205; Xaa-Pro dipeptidase 651102 5389081 JJD26997_0720 Campylobacter jejuni subsp. doylei 269.97 Xaa-Pro dipeptidase YP_001397863.1 650518 D 360109 CDS YP_001397864.1 153952601 5388865 651204..653231 1 NC_009707.1 hypothetical protein 653231 5388865 JJD26997_0721 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397864.1 651204 D 360109 CDS YP_001397865.1 153951628 5389707 653228..653938 1 NC_009707.1 identified by match to protein family HMM PF02348; putative acylneuraminate cytidylyltransferase 653938 5389707 JJD26997_0722 Campylobacter jejuni subsp. doylei 269.97 putative acylneuraminate cytidylyltransferase YP_001397865.1 653228 D 360109 CDS YP_001397866.1 153952139 5389106 654002..654445 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 654445 5389106 JJD26997_0723 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397866.1 654002 D 360109 CDS YP_001397867.1 153951812 5390219 654415..655470 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 655470 5390219 JJD26997_0724 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397867.1 654415 D 360109 CDS YP_001397868.1 153951078 5388997 655471..656604 1 NC_009707.1 identified by match to protein family HMM PF00156; putative glutamine amidophosphoribosyltransferase 656604 5388997 JJD26997_0725 Campylobacter jejuni subsp. doylei 269.97 putative glutamine amidophosphoribosyltransferase YP_001397868.1 655471 D 360109 CDS YP_001397869.1 153952102 5389965 656684..657235 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 657235 5389965 JJD26997_0726 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397869.1 656684 D 360109 CDS YP_001397870.1 153951234 5390475 657232..658224 1 NC_009707.1 identified by match to protein family HMM PF00682; hypothetical protein 658224 5390475 JJD26997_0727 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397870.1 657232 D 360109 CDS YP_001397871.1 153952318 5389617 complement(658266..658508) 1 NC_009707.1 hypothetical protein 658508 5389617 JJD26997_0728 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397871.1 658266 R 360109 CDS YP_001397872.1 153952288 5389166 complement(660249..660611) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 660611 5389166 JJD26997_0732 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397872.1 660249 R 360109 CDS YP_001397873.1 153952142 5390017 660597..660929 1 NC_009707.1 putative DNA methylase-type I restriction-modification system 660929 5390017 JJD26997_0733 Campylobacter jejuni subsp. doylei 269.97 putative DNA methylase-type I restriction-modification system YP_001397873.1 660597 D 360109 CDS YP_001397874.1 153951064 5389843 660926..661117 1 NC_009707.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 661117 thiS 5389843 thiS Campylobacter jejuni subsp. doylei 269.97 thiamine biosynthesis protein ThiS YP_001397874.1 660926 D 360109 CDS YP_001397875.1 153951833 5389179 661114..661917 1 NC_009707.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 661917 thiF 5389179 thiF Campylobacter jejuni subsp. doylei 269.97 thiamine biosynthesis protein ThiF YP_001397875.1 661114 D 360109 CDS YP_001397876.1 153951730 5389375 661920..662696 1 NC_009707.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 662696 thiG 5389375 thiG Campylobacter jejuni subsp. doylei 269.97 thiazole synthase YP_001397876.1 661920 D 360109 CDS YP_001397877.1 153952402 5390506 662699..663844 1 NC_009707.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 663844 thiH 5390506 thiH Campylobacter jejuni subsp. doylei 269.97 thiamine biosynthesis protein ThiH YP_001397877.1 662699 D 360109 CDS YP_001397878.1 153951458 5390038 663834..664445 1 NC_009707.1 identified by match to protein family HMM PF02581; putative thiamine-phosphate pyrophosphorylase 664445 5390038 JJD26997_0738 Campylobacter jejuni subsp. doylei 269.97 putative thiamine-phosphate pyrophosphorylase YP_001397878.1 663834 D 360109 CDS YP_001397879.1 153951519 5390063 complement(665571..666599) 1 NC_009707.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 666599 murG 5390063 murG Campylobacter jejuni subsp. doylei 269.97 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001397879.1 665571 R 360109 CDS YP_001397880.1 153952474 5389385 complement(666596..667759) 1 NC_009707.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; cell cycle protein FtsW 667759 5389385 JJD26997_0744 Campylobacter jejuni subsp. doylei 269.97 cell cycle protein FtsW YP_001397880.1 666596 R 360109 CDS YP_001397881.1 153951249 5389209 667899..669344 1 NC_009707.1 biotin carboxylase; catalyses the carboxylation of the carrier protein which then transfers the carboxyl group to form malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase subunit A 669344 accC-1 5389209 accC-1 Campylobacter jejuni subsp. doylei 269.97 acetyl-CoA carboxylase subunit A YP_001397881.1 667899 D 360109 CDS YP_001397882.1 153952243 5389356 669348..669560 1 NC_009707.1 hypothetical protein 669560 5389356 JJD26997_0746 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397882.1 669348 D 360109 CDS YP_001397883.1 153951214 5390052 669560..670279 1 NC_009707.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 670279 5390052 JJD26997_0747 Campylobacter jejuni subsp. doylei 269.97 arginyl-tRNA-protein transferase YP_001397883.1 669560 D 360109 CDS YP_001397884.1 153952208 5389058 670280..671086 1 NC_009707.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 671086 5389058 JJD26997_0748 Campylobacter jejuni subsp. doylei 269.97 adenylosuccinate lyase YP_001397884.1 670280 D 360109 CDS YP_001397885.1 153950950 5390565 complement(671109..674126) 1 NC_009707.1 identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein 674126 5390565 JJD26997_0749 Campylobacter jejuni subsp. doylei 269.97 AcrB/AcrD/AcrF family protein YP_001397885.1 671109 R 360109 CDS YP_001397886.1 153951905 5389975 complement(674129..674869) 1 NC_009707.1 hypothetical protein 674869 5389975 JJD26997_0750 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397886.1 674129 R 360109 CDS YP_001397887.1 153951625 5388939 complement(674866..676125) 1 NC_009707.1 identified by match to protein family HMM PF02321; putative outer membrane component of efflux system 676125 5388939 JJD26997_0751 Campylobacter jejuni subsp. doylei 269.97 putative outer membrane component of efflux system YP_001397887.1 674866 R 360109 CDS YP_001397888.1 153951937 5389437 complement(676173..678215) 1 NC_009707.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane ferric hydroxamate receptor FhuA 678215 5389437 JJD26997_0752 Campylobacter jejuni subsp. doylei 269.97 outer membrane ferric hydroxamate receptor FhuA YP_001397888.1 676173 R 360109 CDS YP_001397889.1 153951378 5389308 678395..679159 1 NC_009707.1 identified by match to protein family HMM PF00005; ferrichrome transport ATP-binding protein FhuC 679159 5389308 JJD26997_0753 Campylobacter jejuni subsp. doylei 269.97 ferrichrome transport ATP-binding protein FhuC YP_001397889.1 678395 D 360109 CDS YP_001397890.1 153952087 5389480 679161..679985 1 NC_009707.1 identified by match to protein family HMM PF01497; FecB protein 679985 5389480 JJD26997_0754 Campylobacter jejuni subsp. doylei 269.97 FecB protein YP_001397890.1 679161 D 360109 CDS YP_001397891.1 153952591 5388588 682651..684441 1 NC_009707.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 684441 lepA 5388588 lepA Campylobacter jejuni subsp. doylei 269.97 GTP-binding protein LepA YP_001397891.1 682651 D 360109 CDS YP_001397892.1 153952272 5389246 684518..685162 1 NC_009707.1 membrane liproprotein MapA 685162 mapA 5389246 mapA Campylobacter jejuni subsp. doylei 269.97 membrane liproprotein MapA YP_001397892.1 684518 D 360109 CDS YP_001397893.1 153951791 5389590 685159..685734 1 NC_009707.1 transformation system protein 685734 ctsW 5389590 ctsW Campylobacter jejuni subsp. doylei 269.97 transformation system protein YP_001397893.1 685159 D 360109 CDS YP_001397894.1 153951683 5389941 685775..688363 1 NC_009707.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 688363 gyrA 5389941 gyrA Campylobacter jejuni subsp. doylei 269.97 DNA gyrase subunit A YP_001397894.1 685775 D 360109 CDS YP_001397895.1 153951840 5390480 688431..688946 1 NC_009707.1 identified by match to protein family HMM PF04164; putative lipoprotein 688946 5390480 JJD26997_0762 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001397895.1 688431 D 360109 CDS YP_001397896.1 153951668 5389674 689054..689371 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 689371 5389674 JJD26997_0763 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397896.1 689054 D 360109 CDS YP_001397897.1 153952060 5389048 689429..690730 1 NC_009707.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; sigma-54 dependent DNA-binding response regulator 690730 5389048 JJD26997_0764 Campylobacter jejuni subsp. doylei 269.97 sigma-54 dependent DNA-binding response regulator YP_001397897.1 689429 D 360109 CDS YP_001397898.1 153951010 5388809 690730..691761 1 NC_009707.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 691761 asd 5388809 asd Campylobacter jejuni subsp. doylei 269.97 aspartate-semialdehyde dehydrogenase YP_001397898.1 690730 D 360109 CDS YP_001397899.1 153951483 5390287 691770..692276 1 NC_009707.1 identified by match to protein family HMM PF03350; hypothetical protein 692276 5390287 JJD26997_0766 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397899.1 691770 D 360109 CDS YP_001397900.1 153952400 5388898 692328..692519 1 NC_009707.1 porin domain-containing protein 692519 5388898 JJD26997_0767 Campylobacter jejuni subsp. doylei 269.97 porin domain-containing protein YP_001397900.1 692328 D 360109 CDS YP_001397901.1 153951605 5390036 692528..692962 1 NC_009707.1 cytochrome c family protein 692962 5390036 JJD26997_0768 Campylobacter jejuni subsp. doylei 269.97 cytochrome c family protein YP_001397901.1 692528 D 360109 CDS YP_001397902.1 153952635 5389953 692993..694108 1 NC_009707.1 identified by match to protein family HMM PF01094; high affinity branched-chain amino acid ABC transporter periplasmic amino acid-binding protein 694108 5389953 JJD26997_0769 Campylobacter jejuni subsp. doylei 269.97 high affinity branched-chain amino acid ABC transporter periplasmic amino acid-binding protein YP_001397902.1 692993 D 360109 CDS YP_001397903.1 153951623 5388718 694130..695239 1 NC_009707.1 identified by match to protein family HMM PF01094; high affinity branched-chain amino acid ABC transporter periplasmic amino acid-binding protein 695239 5388718 JJD26997_0770 Campylobacter jejuni subsp. doylei 269.97 high affinity branched-chain amino acid ABC transporter periplasmic amino acid-binding protein YP_001397903.1 694130 D 360109 CDS YP_001397904.1 153951345 5389444 695259..696155 1 NC_009707.1 identified by match to protein family HMM PF02653; high affinity branched-chain amino acid ABC transporter permease 696155 livH 5389444 livH Campylobacter jejuni subsp. doylei 269.97 high affinity branched-chain amino acid ABC transporter permease YP_001397904.1 695259 D 360109 CDS YP_001397905.1 153952098 5390439 696155..697207 1 NC_009707.1 identified by match to protein family HMM PF02653; high affinity branched-chain amino acid ABC transporter permease 697207 livM 5390439 livM Campylobacter jejuni subsp. doylei 269.97 high affinity branched-chain amino acid ABC transporter permease YP_001397905.1 696155 D 360109 CDS YP_001397906.1 153951149 5388752 697204..697974 1 NC_009707.1 identified by match to protein family HMM PF00005; high affinity branched-chain amino acid ABC transporter ATP-binding protein 697974 livG 5388752 livG Campylobacter jejuni subsp. doylei 269.97 high affinity branched-chain amino acid ABC transporter ATP-binding protein YP_001397906.1 697204 D 360109 CDS YP_001397907.1 153952218 5389205 697958..698656 1 NC_009707.1 identified by match to protein family HMM PF00005; high affinity branched-chain amino acid ABC transporter ATP-binding protein 698656 livF 5389205 livF Campylobacter jejuni subsp. doylei 269.97 high affinity branched-chain amino acid ABC transporter ATP-binding protein YP_001397907.1 697958 D 360109 CDS YP_001397908.1 153951050 5389878 698674..701919 1 NC_009707.1 identified by match to protein family HMM PF01578; CcmF/CcyK/CcsA family cytochrome c biogenesis protein 701919 5389878 JJD26997_0775 Campylobacter jejuni subsp. doylei 269.97 CcmF/CcyK/CcsA family cytochrome c biogenesis protein YP_001397908.1 698674 D 360109 CDS YP_001397909.1 153951997 5388610 701920..702384 1 NC_009707.1 hypothetical protein 702384 5388610 JJD26997_0776 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397909.1 701920 D 360109 CDS YP_001397910.1 153952587 5389092 complement(702516..703283) 1 NC_009707.1 hypothetical protein 703283 5389092 JJD26997_0778 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397910.1 702516 R 360109 CDS YP_001397911.1 153951771 5390184 complement(703285..704406) 1 NC_009707.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 704406 tgt 5390184 tgt Campylobacter jejuni subsp. doylei 269.97 queuine tRNA-ribosyltransferase YP_001397911.1 703285 R 360109 CDS YP_001397912.1 153952368 5388647 704436..705836 1 NC_009707.1 identified by match to protein family HMM PF02080; TrkA domain-containing protein 705836 5388647 JJD26997_0780 Campylobacter jejuni subsp. doylei 269.97 TrkA domain-containing protein YP_001397912.1 704436 D 360109 CDS YP_001397913.1 153951199 5389874 705882..706937 1 NC_009707.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 706937 aroB 5389874 aroB Campylobacter jejuni subsp. doylei 269.97 3-dehydroquinate synthase YP_001397913.1 705882 D 360109 CDS YP_001397914.1 153952566 5390252 706934..708505 1 NC_009707.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 708505 5390252 JJD26997_0782 Campylobacter jejuni subsp. doylei 269.97 mechanosensitive ion channel family protein YP_001397914.1 706934 D 360109 CDS YP_001397915.1 153951587 5389642 708502..709752 1 NC_009707.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; MiaB-like tRNA modifying enzyme 709752 5389642 JJD26997_0783 Campylobacter jejuni subsp. doylei 269.97 MiaB-like tRNA modifying enzyme YP_001397915.1 708502 D 360109 CDS YP_001397916.1 153952493 5390571 709756..711372 1 NC_009707.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; cell division protein FtsH 711372 5390571 JJD26997_0784 Campylobacter jejuni subsp. doylei 269.97 cell division protein FtsH YP_001397916.1 709756 D 360109 CDS YP_001397917.1 153951696 5389659 complement(711380..711796) 1 NC_009707.1 hypothetical protein 711796 5389659 JJD26997_0785 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397917.1 711380 R 360109 CDS YP_001397918.1 153951804 5388867 711894..712412 1 NC_009707.1 identified by match to protein family HMM PF01694; rhomboid family protein 712412 5388867 JJD26997_0786 Campylobacter jejuni subsp. doylei 269.97 rhomboid family protein YP_001397918.1 711894 D 360109 CDS YP_001397919.1 153951096 5389704 712409..712921 1 NC_009707.1 identified by match to protein family HMM PF00300; phosphohistidine phosphatase SixA 712921 sixA 5389704 sixA Campylobacter jejuni subsp. doylei 269.97 phosphohistidine phosphatase SixA YP_001397919.1 712409 D 360109 CDS YP_001397920.1 153952229 5389627 complement(712936..714804) 1 NC_009707.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 714804 rpoD 5389627 rpoD Campylobacter jejuni subsp. doylei 269.97 RNA polymerase sigma factor RpoD YP_001397920.1 712936 R 360109 CDS YP_001397921.1 153952274 5389455 715364..715936 1 NC_009707.1 hypothetical protein 715936 5389455 JJD26997_0791 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397921.1 715364 D 360109 CDS YP_001397922.1 153952100 5389592 complement(715952..716518) 1 NC_009707.1 identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138; methyltransferase GidB 716518 gidB 5389592 gidB Campylobacter jejuni subsp. doylei 269.97 methyltransferase GidB YP_001397922.1 715952 R 360109 CDS YP_001397923.1 153951604 5388844 complement(716519..717079) 1 NC_009707.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 717079 ribA 5388844 ribA Campylobacter jejuni subsp. doylei 269.97 GTP cyclohydrolase II YP_001397923.1 716519 R 360109 CDS YP_001397924.1 153951926 5389952 717137..718120 1 NC_009707.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 718120 hemB 5389952 hemB Campylobacter jejuni subsp. doylei 269.97 delta-aminolevulinic acid dehydratase YP_001397924.1 717137 D 360109 CDS YP_001397925.1 153951445 5389784 718117..719037 1 NC_009707.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 719037 argF 5389784 argF Campylobacter jejuni subsp. doylei 269.97 ornithine carbamoyltransferase YP_001397925.1 718117 D 360109 CDS YP_001397926.1 153952645 5389502 719034..719525 1 NC_009707.1 hypothetical protein 719525 5389502 JJD26997_0796 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397926.1 719034 D 360109 CDS YP_001397927.1 153952155 5388604 719512..720867 1 NC_009707.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 720867 hemN 5388604 hemN Campylobacter jejuni subsp. doylei 269.97 coproporphyrinogen III oxidase YP_001397927.1 719512 D 360109 CDS YP_001397928.1 153952441 5390355 720869..722134 1 NC_009707.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur cluster-binding domain-containing protein 722134 5390355 JJD26997_0798 Campylobacter jejuni subsp. doylei 269.97 iron-sulfur cluster-binding domain-containing protein YP_001397928.1 720869 D 360109 CDS YP_001397929.1 153952108 5388577 complement(722144..722341) 1 NC_009707.1 hypothetical protein 722341 5388577 JJD26997_0799 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397929.1 722144 R 360109 CDS YP_001397930.1 153950986 5389068 722485..724014 1 NC_009707.1 identified by match to protein family HMM PF03806; putative efflux pump component MtrF 724014 5389068 JJD26997_0800 Campylobacter jejuni subsp. doylei 269.97 putative efflux pump component MtrF YP_001397930.1 722485 D 360109 CDS YP_001397931.1 153952270 5389722 724018..725238 1 NC_009707.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 725238 pepT 5389722 pepT Campylobacter jejuni subsp. doylei 269.97 peptidase T YP_001397931.1 724018 D 360109 CDS YP_001397932.1 153951823 5388832 726541..727692 1 NC_009707.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; hippurate hydrolase 727692 hipO 5388832 hipO Campylobacter jejuni subsp. doylei 269.97 hippurate hydrolase YP_001397932.1 726541 D 360109 CDS YP_001397933.1 153952617 5389837 complement(727696..728436) 1 NC_009707.1 identified by match to protein family HMM PF03883; hypothetical protein 728436 5389837 JJD26997_0804 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397933.1 727696 R 360109 CDS YP_001397934.1 153952037 5388922 complement(728528..729646) 1 NC_009707.1 surface-exposed lipoprotein 729646 jlpA 5388922 jlpA Campylobacter jejuni subsp. doylei 269.97 surface-exposed lipoprotein YP_001397934.1 728528 R 360109 CDS YP_001397935.1 153951094 5389930 729866..730705 1 NC_009707.1 identified by match to protein family HMM PF00497; CjaA protein 730705 cjaA 5389930 cjaA Campylobacter jejuni subsp. doylei 269.97 CjaA protein YP_001397935.1 729866 D 360109 CDS YP_001397936.1 153951709 5389120 730745..730876 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 730876 5389120 JJD26997_0807 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397936.1 730745 D 360109 CDS YP_001397937.1 153951270 5389861 complement(731964..733232) 1 NC_009707.1 aminoacyl-histidine dipeptidase 733232 pepD 5389861 pepD Campylobacter jejuni subsp. doylei 269.97 aminoacyl-histidine dipeptidase YP_001397937.1 731964 R 360109 CDS YP_001397938.1 153950976 5390548 733300..733827 1 NC_009707.1 identified by match to protein family HMM PF00565; thermonuclease family protein 733827 5390548 JJD26997_0811 Campylobacter jejuni subsp. doylei 269.97 thermonuclease family protein YP_001397938.1 733300 D 360109 CDS YP_001397939.1 153951943 5388712 733836..734009 1 NC_009707.1 putative lipoprotein 734009 5388712 JJD26997_0812 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001397939.1 733836 D 360109 CDS YP_001397940.1 153952490 5389494 complement(734010..734588) 1 NC_009707.1 hypothetical protein 734588 5389494 JJD26997_0813 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397940.1 734010 R 360109 CDS YP_001397941.1 153951729 5390464 complement(734661..735536) 1 NC_009707.1 identified by match to protein family HMM PF08003; match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase 735536 5390464 JJD26997_0814 Campylobacter jejuni subsp. doylei 269.97 methyltransferase YP_001397941.1 734661 R 360109 CDS YP_001397942.1 153951660 5390505 complement(736139..736369) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 736369 5390505 JJD26997_0815 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397942.1 736139 R 360109 CDS YP_001397943.1 153951051 5388651 736990..737364 1 NC_009707.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase family protein 737364 5388651 JJD26997_0817 Campylobacter jejuni subsp. doylei 269.97 thioesterase family protein YP_001397943.1 736990 D 360109 CDS YP_001397944.1 153952620 5388611 complement(737356..738507) 1 NC_009707.1 hypothetical protein 738507 5388611 JJD26997_0816 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397944.1 737356 R 360109 CDS YP_001397945.1 153951968 5389970 complement(738543..739121) 1 NC_009707.1 hypothetical protein 739121 5389970 JJD26997_0818 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397945.1 738543 R 360109 CDS YP_001397946.1 153952231 5389411 complement(739148..739627) 1 NC_009707.1 identified by match to protein family HMM PF00583; acetyltransferase 739627 5389411 JJD26997_0819 Campylobacter jejuni subsp. doylei 269.97 acetyltransferase YP_001397946.1 739148 R 360109 CDS YP_001397947.1 153951017 5390243 739758..739892 1 NC_009707.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 739892 rpmH 5390243 rpmH Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L34 YP_001397947.1 739758 D 360109 CDS YP_001397948.1 153951419 5390237 739889..740215 1 NC_009707.1 identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component 740215 rnpA 5390237 rnpA Campylobacter jejuni subsp. doylei 269.97 ribonuclease P protein component YP_001397948.1 739889 D 360109 CDS YP_001397949.1 153951899 5390497 740212..740553 1 NC_009707.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 740553 5390497 JJD26997_0822 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397949.1 740212 D 360109 CDS YP_001397950.1 153951835 5389656 740550..742142 1 NC_009707.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 742142 5389656 JJD26997_0823 Campylobacter jejuni subsp. doylei 269.97 putative inner membrane protein translocase component YidC YP_001397950.1 740550 D 360109 CDS YP_001397951.1 153951735 5389893 742139..742957 1 NC_009707.1 hypothetical protein 742957 5389893 JJD26997_0824 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397951.1 742139 D 360109 CDS YP_001397952.1 153952344 5389641 742950..744278 1 NC_009707.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 744278 trmE 5389641 trmE Campylobacter jejuni subsp. doylei 269.97 tRNA modification GTPase TrmE YP_001397952.1 742950 D 360109 CDS YP_001397953.1 153951583 5389774 744289..746475 1 NC_009707.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 746475 purL 5389774 purL Campylobacter jejuni subsp. doylei 269.97 phosphoribosylformylglycinamidine synthase II YP_001397953.1 744289 D 360109 CDS YP_001397954.1 153951540 5389217 746604..747242 1 NC_009707.1 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 747242 5389217 JJD26997_0827 Campylobacter jejuni subsp. doylei 269.97 DnaJ domain-containing protein YP_001397954.1 746604 D 360109 CDS YP_001397955.1 153951239 5390115 747245..748777 1 NC_009707.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 748777 purH 5390115 purH Campylobacter jejuni subsp. doylei 269.97 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001397955.1 747245 D 360109 CDS YP_001397956.1 153951101 5389625 complement(750400..750666) 1 NC_009707.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; hypothetical protein 750666 5389625 JJD26997_0831 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397956.1 750400 R 360109 CDS YP_001397957.1 153952520 5390077 complement(750656..750877) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 750877 5390077 JJD26997_0832 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397957.1 750656 R 360109 CDS YP_001397958.1 153951760 5388592 complement(750997..751605) 1 NC_009707.1 identified by match to protein family HMM PF08668; HDOD domain-contain protein 751605 5388592 JJD26997_0833 Campylobacter jejuni subsp. doylei 269.97 HDOD domain-contain protein YP_001397958.1 750997 R 360109 CDS YP_001397959.1 153951700 5390392 complement(751624..751848) 1 NC_009707.1 lytic transglycosylase, catalytic 751848 5390392 JJD26997_0834 Campylobacter jejuni subsp. doylei 269.97 lytic transglycosylase, catalytic YP_001397959.1 751624 R 360109 CDS YP_001397960.1 153952259 5389856 complement(751861..752157) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 752157 5389856 JJD26997_0835 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397960.1 751861 R 360109 CDS YP_001397961.1 153951491 5388615 complement(752154..754556) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 754556 5388615 JJD26997_0836 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397961.1 752154 R 360109 CDS YP_001397962.1 153951180 5388780 complement(754549..755916) 1 NC_009707.1 DNA transfer in the process of conjugation and F pilus assembly protein 755916 5388780 JJD26997_0837 Campylobacter jejuni subsp. doylei 269.97 DNA transfer in the process of conjugation and F pilus assembly protein YP_001397962.1 754549 R 360109 CDS YP_001397963.1 153951248 5388726 complement(755931..756668) 1 NC_009707.1 identified by match to protein family HMM TIGR02681; hypothetical protein 756668 5388726 JJD26997_0838 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397963.1 755931 R 360109 CDS YP_001397964.1 153952214 5389170 complement(756665..756934) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 756934 5389170 JJD26997_0839 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397964.1 756665 R 360109 CDS YP_001397965.1 153950995 5390419 complement(756952..757755) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 757755 5390419 JJD26997_0840 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397965.1 756952 R 360109 CDS YP_001397966.1 153951956 5388599 complement(757755..758321) 1 NC_009707.1 identified by match to protein family HMM TIGR02681; hypothetical protein 758321 5388599 JJD26997_0841 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397966.1 757755 R 360109 CDS YP_001397967.1 153951435 5389553 complement(759518..760207) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 760207 5389553 JJD26997_0844 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397967.1 759518 R 360109 CDS YP_001397968.1 153951325 5389372 760475..761041 1 NC_009707.1 identified by match to protein family HMM PF01381; helix-turn-helix domain-containing protein 761041 5389372 JJD26997_0845 Campylobacter jejuni subsp. doylei 269.97 helix-turn-helix domain-containing protein YP_001397968.1 760475 D 360109 CDS YP_001397969.1 153951684 5388858 761358..761501 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 761501 5388858 JJD26997_0846 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397969.1 761358 D 360109 CDS YP_001397970.1 153952432 5389619 762357..762812 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 762812 5389619 JJD26997_0847 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397970.1 762357 D 360109 CDS YP_001397971.1 153950985 5389850 763349..763777 1 NC_009707.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein family 763777 5389850 JJD26997_0848 Campylobacter jejuni subsp. doylei 269.97 single-strand binding protein family YP_001397971.1 763349 D 360109 CDS YP_001397972.1 153952606 5389721 763868..764074 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 764074 5389721 JJD26997_0849 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397972.1 763868 D 360109 CDS YP_001397973.1 153951388 5390211 764100..764213 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 764213 5390211 JJD26997_0850 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397973.1 764100 D 360109 CDS YP_001397974.1 153951463 5388874 764330..765208 1 NC_009707.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913; putative prophage LambdaCh01, recombination protein Bet 765208 5388874 JJD26997_0851 Campylobacter jejuni subsp. doylei 269.97 putative prophage LambdaCh01, recombination protein Bet YP_001397974.1 764330 D 360109 CDS YP_001397975.1 153952413 5389141 765249..765749 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 765749 5389141 JJD26997_0852 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397975.1 765249 D 360109 CDS YP_001397976.1 153951742 5390040 765957..766088 1 NC_009707.1 hypothetical protein 766088 5390040 JJD26997_0853 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397976.1 765957 D 360109 CDS YP_001397977.1 153952658 5389073 766310..766483 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 766483 5389073 JJD26997_0854 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397977.1 766310 D 360109 CDS YP_001397978.1 153951685 5388985 766496..766714 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 766714 5388985 JJD26997_0855 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397978.1 766496 D 360109 CDS YP_001397979.1 153951824 5389620 766724..767215 1 NC_009707.1 identified by match to protein family HMM PF00265; thymidine kinase 767215 tdk 5389620 tdk Campylobacter jejuni subsp. doylei 269.97 thymidine kinase YP_001397979.1 766724 D 360109 CDS YP_001397980.1 153951309 5389838 767276..767521 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 767521 5389838 JJD26997_0857 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397980.1 767276 D 360109 CDS YP_001397981.1 153951360 5390591 768040..768465 1 NC_009707.1 hypothetical protein 768465 5390591 JJD26997_0859 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397981.1 768040 D 360109 CDS YP_001397982.1 153951471 5389279 768465..768617 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 768617 5389279 JJD26997_0860 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397982.1 768465 D 360109 CDS YP_001397983.1 153952436 5389769 768717..768989 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 768989 5389769 JJD26997_0861 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397983.1 768717 D 360109 CDS YP_001397984.1 153952643 5389078 768992..769354 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 769354 5389078 JJD26997_0862 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397984.1 768992 D 360109 CDS YP_001397985.1 153952284 5390352 769369..769947 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 769947 5390352 JJD26997_0863 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397985.1 769369 D 360109 CDS YP_001397986.1 153952156 5389338 770044..770658 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 770658 5389338 JJD26997_0864 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397986.1 770044 D 360109 CDS YP_001397987.1 153951179 5390356 770744..771328 1 NC_009707.1 hypothetical protein 771328 5390356 JJD26997_0865 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397987.1 770744 D 360109 CDS YP_001397988.1 153951975 5388707 771372..771869 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 771869 5388707 JJD26997_0866 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397988.1 771372 D 360109 CDS YP_001397989.1 153951941 5389765 771930..773096 1 NC_009707.1 putative DNA primase 773096 5389765 JJD26997_0867 Campylobacter jejuni subsp. doylei 269.97 putative DNA primase YP_001397989.1 771930 D 360109 CDS YP_001397990.1 153951768 5389301 773108..773365 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 773365 5389301 JJD26997_0868 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397990.1 773108 D 360109 CDS YP_001397991.1 153952537 5389039 773415..773828 1 NC_009707.1 BdrR 773828 5389039 JJD26997_0869 Campylobacter jejuni subsp. doylei 269.97 BdrR YP_001397991.1 773415 D 360109 CDS YP_001397992.1 153951600 5390199 complement(774152..774397) 1 NC_009707.1 identified by match to protein family HMM PF05406; WGR domain-containing protein 774397 5390199 JJD26997_0870 Campylobacter jejuni subsp. doylei 269.97 WGR domain-containing protein YP_001397992.1 774152 R 360109 CDS YP_001397993.1 153951459 5390276 complement(774409..774639) 1 NC_009707.1 hypothetical protein 774639 5390276 JJD26997_0871 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397993.1 774409 R 360109 CDS YP_001397994.1 153952355 5390180 774850..775710 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 775710 5390180 JJD26997_0872 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001397994.1 774850 D 360109 CDS YP_001397995.1 153951147 5389609 complement(777673..778011) 1 NC_009707.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 778011 atpE 5389609 atpE Campylobacter jejuni subsp. doylei 269.97 F0F1 ATP synthase subunit C YP_001397995.1 777673 R 360109 CDS YP_001397996.1 153951915 5390471 778242..779576 1 NC_009707.1 identified by match to protein family HMM PF00209; putative sodium transporter 779576 5390471 JJD26997_0879 Campylobacter jejuni subsp. doylei 269.97 putative sodium transporter YP_001397996.1 778242 D 360109 CDS YP_001397997.1 153951231 5389824 779589..780929 1 NC_009707.1 identified by match to protein family HMM PF00209; putative sodium transporter 780929 5389824 JJD26997_0880 Campylobacter jejuni subsp. doylei 269.97 putative sodium transporter YP_001397997.1 779589 D 360109 CDS YP_001397998.1 153952195 5388656 780962..782761 1 NC_009707.1 identified by match to protein family HMM PF00364; match to protein family HMM PF00682; oxaloacetate decarboxylase subunit alpha 782761 5388656 JJD26997_0881 Campylobacter jejuni subsp. doylei 269.97 oxaloacetate decarboxylase subunit alpha YP_001397998.1 780962 D 360109 CDS YP_001397999.1 153951612 5390576 782774..784348 1 NC_009707.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 784348 pckA 5390576 pckA Campylobacter jejuni subsp. doylei 269.97 phosphoenolpyruvate carboxykinase YP_001397999.1 782774 D 360109 CDS YP_001398000.1 153951734 5390608 784358..785740 1 NC_009707.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 785740 argH 5390608 argH Campylobacter jejuni subsp. doylei 269.97 argininosuccinate lyase YP_001398000.1 784358 D 360109 CDS YP_001398001.1 153952592 5389640 complement(785762..786865) 1 NC_009707.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 786865 5389640 JJD26997_0884 Campylobacter jejuni subsp. doylei 269.97 GTP-dependent nucleic acid-binding protein EngD YP_001398001.1 785762 R 360109 CDS YP_001398002.1 153951443 5389248 complement(786862..788313) 1 NC_009707.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 788313 5389248 JJD26997_0885 Campylobacter jejuni subsp. doylei 269.97 leucyl aminopeptidase YP_001398002.1 786862 R 360109 CDS YP_001398003.1 153951919 5389500 complement(788310..788906) 1 NC_009707.1 DedA family protein 788906 5389500 JJD26997_0886 Campylobacter jejuni subsp. doylei 269.97 DedA family protein YP_001398003.1 788310 R 360109 CDS YP_001398004.1 153951691 5390309 complement(788925..789473) 1 NC_009707.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 789473 apt 5390309 apt Campylobacter jejuni subsp. doylei 269.97 adenine phosphoribosyltransferase YP_001398004.1 788925 R 360109 CDS YP_001398005.1 153952162 5390489 complement(789470..789802) 1 NC_009707.1 hypothetical protein 789802 5390489 JJD26997_0888 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398005.1 789470 R 360109 CDS YP_001398006.1 153951312 5389327 complement(789802..790239) 1 NC_009707.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase B 790239 rpiB 5389327 rpiB Campylobacter jejuni subsp. doylei 269.97 ribose 5-phosphate isomerase B YP_001398006.1 789802 R 360109 CDS YP_001398007.1 153951413 5388860 790403..790957 1 NC_009707.1 identified by match to protein family HMM PF01339; protein-glutamate methylesterase CheB 790957 cheB 5388860 cheB Campylobacter jejuni subsp. doylei 269.97 protein-glutamate methylesterase CheB YP_001398007.1 790403 D 360109 CDS YP_001398008.1 153951397 5389528 791897..792625 1 NC_009707.1 identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein PEB1 792625 pebC 5389528 pebC Campylobacter jejuni subsp. doylei 269.97 amino acid ABC transporter ATP-binding protein PEB1 YP_001398008.1 791897 D 360109 CDS YP_001398009.1 153952077 5389725 792648..793427 1 NC_009707.1 PEB1; bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein 793427 pebA 5389725 pebA Campylobacter jejuni subsp. doylei 269.97 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein YP_001398009.1 792648 D 360109 CDS YP_001398010.1 153951698 5390171 793429..794181 1 NC_009707.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 794181 5390171 JJD26997_0894 Campylobacter jejuni subsp. doylei 269.97 amino acid ABC transporter permease YP_001398010.1 793429 D 360109 CDS YP_001398011.1 153952480 5388635 794192..794851 1 NC_009707.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 794851 5388635 JJD26997_0895 Campylobacter jejuni subsp. doylei 269.97 amino acid ABC transporter permease YP_001398011.1 794192 D 360109 CDS YP_001398012.1 153951274 5388824 794959..795888 1 NC_009707.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 795888 prsA 5388824 prsA Campylobacter jejuni subsp. doylei 269.97 ribose-phosphate pyrophosphokinase YP_001398012.1 794959 D 360109 CDS YP_001398013.1 153951850 5388980 796055..798166 1 NC_009707.1 identified by match to protein family HMM PF02554; carbon starvation protein A 798166 cstA 5388980 cstA Campylobacter jejuni subsp. doylei 269.97 carbon starvation protein A YP_001398013.1 796055 D 360109 CDS YP_001398014.1 153951104 5389993 798144..798344 1 NC_009707.1 identified by match to protein family HMM PF04328; hypothetical protein 798344 5389993 JJD26997_0898 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398014.1 798144 D 360109 CDS YP_001398015.1 153951670 5390119 complement(798384..798797) 1 NC_009707.1 identified by match to protein family HMM PF03061; thioesterase family protein 798797 5390119 JJD26997_0899 Campylobacter jejuni subsp. doylei 269.97 thioesterase family protein YP_001398015.1 798384 R 360109 CDS YP_001398016.1 153952319 5390001 798859..800682 1 NC_009707.1 invasion antigen B 800682 ciaB 5390001 ciaB Campylobacter jejuni subsp. doylei 269.97 invasion antigen B YP_001398016.1 798859 D 360109 CDS YP_001398017.1 153951444 5388617 800794..801090 1 NC_009707.1 identified by match to protein family HMM PF00216; DNA-binding protein HU 801090 hup 5388617 hup Campylobacter jejuni subsp. doylei 269.97 DNA-binding protein HU YP_001398017.1 800794 D 360109 CDS YP_001398018.1 153952497 5389501 801217..802116 1 NC_009707.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 802116 cysK 5389501 cysK Campylobacter jejuni subsp. doylei 269.97 cysteine synthase A YP_001398018.1 801217 D 360109 CDS YP_001398019.1 153951267 5388842 complement(802123..802680) 1 NC_009707.1 identified by match to protein family HMM PF02630; SCO1/SenC family protein 802680 5388842 JJD26997_0903 Campylobacter jejuni subsp. doylei 269.97 SCO1/SenC family protein YP_001398019.1 802123 R 360109 CDS YP_001398020.1 153951927 5388775 complement(802677..803129) 1 NC_009707.1 hypothetical protein 803129 5388775 JJD26997_0904 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398020.1 802677 R 360109 CDS YP_001398021.1 153950983 5389404 complement(803133..803552) 1 NC_009707.1 identified by match to protein family HMM PF04314; hypothetical protein 803552 5389404 JJD26997_0905 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398021.1 803133 R 360109 CDS YP_001398022.1 153952096 5388975 804234..805211 1 NC_009707.1 hypothetical protein 805211 5388975 JJD26997_0906 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398022.1 804234 D 360109 CDS YP_001398023.1 153951186 5388905 805212..806198 1 NC_009707.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 806198 alr 5388905 alr Campylobacter jejuni subsp. doylei 269.97 alanine racemase YP_001398023.1 805212 D 360109 CDS YP_001398024.1 153952499 5390217 806201..806668 1 NC_009707.1 identified by match to protein family HMM PF00588; RNA methyltransferase 806668 5390217 JJD26997_0908 Campylobacter jejuni subsp. doylei 269.97 RNA methyltransferase YP_001398024.1 806201 D 360109 CDS YP_001398025.1 153951757 5390117 complement(808265..808993) 1 NC_009707.1 identified by match to protein family HMM PF00005; amino acid ABC transporter, ATP-binding protein 808993 5390117 JJD26997_0911 Campylobacter jejuni subsp. doylei 269.97 amino acid ABC transporter, ATP-binding protein YP_001398025.1 808265 R 360109 CDS YP_001398026.1 153951169 5390206 complement(808986..809729) 1 NC_009707.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine amino acid ABC transporter permease 809729 5390206 JJD26997_0912 Campylobacter jejuni subsp. doylei 269.97 His/Glu/Gln/Arg/opine amino acid ABC transporter permease YP_001398026.1 808986 R 360109 CDS YP_001398027.1 153951511 5389606 809812..809991 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 809991 5389606 JJD26997_0913 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398027.1 809812 D 360109 CDS YP_001398028.1 153951347 5388748 809984..810553 1 NC_009707.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein 810553 thiJ 5388748 thiJ Campylobacter jejuni subsp. doylei 269.97 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein YP_001398028.1 809984 D 360109 CDS YP_001398029.1 153951911 5389576 complement(810583..810948) 1 NC_009707.1 identified by match to protein family HMM PF01230; HIT family protein 810948 5389576 JJD26997_0915 Campylobacter jejuni subsp. doylei 269.97 HIT family protein YP_001398029.1 810583 R 360109 CDS YP_001398030.1 153952279 5390100 811071..812063 1 NC_009707.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 812063 pheS 5390100 pheS Campylobacter jejuni subsp. doylei 269.97 phenylalanyl-tRNA synthetase subunit alpha YP_001398030.1 811071 D 360109 CDS YP_001398031.1 153952099 5389588 812060..814381 1 NC_009707.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 814381 pheT 5389588 pheT Campylobacter jejuni subsp. doylei 269.97 phenylalanyl-tRNA synthetase subunit beta YP_001398031.1 812060 D 360109 CDS YP_001398032.1 153951777 5388843 814393..815664 1 NC_009707.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 815664 aroA 5388843 aroA Campylobacter jejuni subsp. doylei 269.97 3-phosphoshikimate 1-carboxyvinyltransferase YP_001398032.1 814393 D 360109 CDS YP_001398033.1 153952263 5388729 815654..816487 1 NC_009707.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 816487 ispH 5388729 ispH Campylobacter jejuni subsp. doylei 269.97 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_001398033.1 815654 D 360109 CDS YP_001398034.1 153951138 5390366 816617..818287 1 NC_009707.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 818287 rpsA 5390366 rpsA Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S1 YP_001398034.1 816617 D 360109 CDS YP_001398035.1 153952469 5390073 818287..818775 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 818775 5390073 JJD26997_0921 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398035.1 818287 D 360109 CDS YP_001398036.1 153952246 5388607 818772..820355 1 NC_009707.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 820355 serA 5388607 serA Campylobacter jejuni subsp. doylei 269.97 D-3-phosphoglycerate dehydrogenase YP_001398036.1 818772 D 360109 CDS YP_001398037.1 153951656 5389015 820342..821004 1 NC_009707.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 821004 5389015 JJD26997_0923 Campylobacter jejuni subsp. doylei 269.97 DNA-binding response regulator YP_001398037.1 820342 D 360109 CDS YP_001398038.1 153952369 5389342 820998..822287 1 NC_009707.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 822287 5389342 JJD26997_0924 Campylobacter jejuni subsp. doylei 269.97 sensor histidine kinase YP_001398038.1 820998 D 360109 CDS YP_001398039.1 153951421 5389875 822291..824222 1 NC_009707.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 824222 5389875 JJD26997_0925 Campylobacter jejuni subsp. doylei 269.97 ABC transporter ATP-binding protein YP_001398039.1 822291 D 360109 CDS YP_001398040.1 153952379 5389065 complement(824881..826377) 1 NC_009707.1 identified by match to protein family HMM PF00580; F-box only protein 18 826377 5389065 JJD26997_0926 Campylobacter jejuni subsp. doylei 269.97 F-box only protein 18 YP_001398040.1 824881 R 360109 CDS YP_001398041.1 153951765 5390580 complement(826352..827167) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 827167 5390580 JJD26997_0927 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398041.1 826352 R 360109 CDS YP_001398042.1 153951781 5388793 827455..827739 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 827739 5388793 JJD26997_0928 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398042.1 827455 D 360109 CDS YP_001398043.1 153951858 5390186 827819..828124 1 NC_009707.1 putative sex pilus assembly 828124 5390186 JJD26997_0929 Campylobacter jejuni subsp. doylei 269.97 putative sex pilus assembly YP_001398043.1 827819 D 360109 CDS YP_001398044.1 153951099 5390302 828128..828706 1 NC_009707.1 putative conjugative transfer protein TraE 828706 5390302 JJD26997_0930 Campylobacter jejuni subsp. doylei 269.97 putative conjugative transfer protein TraE YP_001398044.1 828128 D 360109 CDS YP_001398045.1 153952044 5389265 828703..829515 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 829515 5389265 JJD26997_0931 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398045.1 828703 D 360109 CDS YP_001398046.1 153952054 5390447 829512..830852 1 NC_009707.1 identified by match to protein family HMM PF06447; sex pilus assembly protein 830852 5390447 JJD26997_0932 Campylobacter jejuni subsp. doylei 269.97 sex pilus assembly protein YP_001398046.1 829512 D 360109 CDS YP_001398047.1 153951196 5389596 830865..831629 1 NC_009707.1 hypothetical protein 831629 5389596 JJD26997_0933 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398047.1 830865 D 360109 CDS YP_001398048.1 153952546 5388932 831626..832378 1 NC_009707.1 putative lipoprotein 832378 5388932 JJD26997_0934 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001398048.1 831626 D 360109 CDS YP_001398049.1 153951146 5390098 832347..832736 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 832736 5390098 JJD26997_0935 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398049.1 832347 D 360109 CDS YP_001398050.1 153951831 5390470 833095..835167 1 NC_009707.1 putative pillus assembly protein 835167 5390470 JJD26997_0936 Campylobacter jejuni subsp. doylei 269.97 putative pillus assembly protein YP_001398050.1 833095 D 360109 CDS YP_001398051.1 153951366 5390373 835154..835657 1 NC_009707.1 putative type IV secretory protease 835657 5390373 JJD26997_0937 Campylobacter jejuni subsp. doylei 269.97 putative type IV secretory protease YP_001398051.1 835154 D 360109 CDS YP_001398052.1 153951351 5390533 835645..837111 1 NC_009707.1 putative TraG 837111 5390533 JJD26997_0938 Campylobacter jejuni subsp. doylei 269.97 putative TraG YP_001398052.1 835645 D 360109 CDS YP_001398053.1 153952515 5390159 838345..840537 1 NC_009707.1 identified by match to protein family HMM PF00059; lectin C-type domain-containing protein 840537 5390159 JJD26997_0940 Campylobacter jejuni subsp. doylei 269.97 lectin C-type domain-containing protein YP_001398053.1 838345 D 360109 CDS YP_001398054.1 153951746 5388684 840803..843571 1 NC_009707.1 hypothetical protein 843571 5388684 JJD26997_0941 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398054.1 840803 D 360109 CDS YP_001398055.1 153951732 5389634 complement(843809..844267) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 844267 5389634 JJD26997_0942 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398055.1 843809 R 360109 CDS YP_001398056.1 153952577 5389118 complement(844487..844762) 1 NC_009707.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; addiction module antitoxin 844762 5389118 JJD26997_0943 Campylobacter jejuni subsp. doylei 269.97 addiction module antitoxin YP_001398056.1 844487 R 360109 CDS YP_001398057.1 153952048 5389028 complement(844763..844957) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 844957 5389028 JJD26997_0944 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398057.1 844763 R 360109 CDS YP_001398058.1 153952370 5389355 complement(845070..845351) 1 NC_009707.1 plasmid stabilization system protein 845351 5389355 JJD26997_0945 Campylobacter jejuni subsp. doylei 269.97 plasmid stabilization system protein YP_001398058.1 845070 R 360109 CDS YP_001398059.1 153951427 5389876 complement(845352..845585) 1 NC_009707.1 hypothetical protein 845585 5389876 JJD26997_0946 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398059.1 845352 R 360109 CDS YP_001398060.1 153952547 5390064 complement(845741..845905) 1 NC_009707.1 hypothetical protein 845905 5390064 JJD26997_0947 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398060.1 845741 R 360109 CDS YP_001398061.1 153952464 5389237 complement(845898..846230) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 846230 5389237 JJD26997_0948 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398061.1 845898 R 360109 CDS YP_001398062.1 153951077 5389284 complement(846248..846490) 1 NC_009707.1 hypothetical protein 846490 5389284 JJD26997_0949 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398062.1 846248 R 360109 CDS YP_001398063.1 153951912 5389795 complement(846474..846701) 1 NC_009707.1 hypothetical protein 846701 5389795 JJD26997_0950 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398063.1 846474 R 360109 CDS YP_001398064.1 153951324 5390101 846972..847724 1 NC_009707.1 identified by match to protein family HMM PF01555; DNA methylase 847724 5390101 JJD26997_0951 Campylobacter jejuni subsp. doylei 269.97 DNA methylase YP_001398064.1 846972 D 360109 CDS YP_001398065.1 153952357 5388857 847727..848458 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 848458 5388857 JJD26997_0952 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398065.1 847727 D 360109 CDS YP_001398066.1 153951657 5388627 complement(848622..848741) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 848741 5388627 JJD26997_0953 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398066.1 848622 R 360109 CDS YP_001398067.1 153952366 5389343 complement(849066..849293) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 849293 5389343 JJD26997_0954 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398067.1 849066 R 360109 CDS YP_001398068.1 153951778 5388757 849322..849447 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 849447 5388757 JJD26997_0955 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398068.1 849322 D 360109 CDS YP_001398069.1 153952160 5389439 849512..850354 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 850354 5389439 JJD26997_0956 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398069.1 849512 D 360109 CDS YP_001398070.1 153951190 5389517 850357..850776 1 NC_009707.1 hypothetical protein 850776 5389517 JJD26997_0957 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398070.1 850357 D 360109 CDS YP_001398071.1 153952468 5388901 850932..851081 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 851081 5388901 JJD26997_0958 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398071.1 850932 D 360109 CDS YP_001398072.1 153951699 5389730 851078..851467 1 NC_009707.1 identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550; death-on-curing family protein 851467 5389730 JJD26997_0959 Campylobacter jejuni subsp. doylei 269.97 death-on-curing family protein YP_001398072.1 851078 D 360109 CDS YP_001398073.1 153950990 5388636 851529..852176 1 NC_009707.1 hypothetical protein 852176 5388636 JJD26997_0960 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398073.1 851529 D 360109 CDS YP_001398074.1 153951887 5389162 852173..852502 1 NC_009707.1 hypothetical protein 852502 5389162 JJD26997_0961 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398074.1 852173 D 360109 CDS YP_001398075.1 153951616 5390411 853403..853687 1 NC_009707.1 hypothetical protein 853687 5390411 JJD26997_0962 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398075.1 853403 D 360109 CDS YP_001398076.1 153951412 5388677 853677..853865 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 853865 5388677 JJD26997_0963 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398076.1 853677 D 360109 CDS YP_001398077.1 153951189 5388804 complement(853914..854342) 1 NC_009707.1 putative thioredoxin 854342 5388804 JJD26997_0964 Campylobacter jejuni subsp. doylei 269.97 putative thioredoxin YP_001398077.1 853914 R 360109 CDS YP_001398078.1 153952157 5388900 complement(854355..855137) 1 NC_009707.1 identified by match to protein family HMM PF05818; TraT complement resistance protein 855137 5388900 JJD26997_0965 Campylobacter jejuni subsp. doylei 269.97 TraT complement resistance protein YP_001398078.1 854355 R 360109 CDS YP_001398079.1 153952614 5390046 complement(855124..855288) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 855288 5390046 JJD26997_0966 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398079.1 855124 R 360109 CDS YP_001398080.1 153951996 5389943 complement(855243..855395) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 855395 5389943 JJD26997_0967 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398080.1 855243 R 360109 CDS YP_001398081.1 153952106 5390135 complement(855449..856393) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 856393 5390135 JJD26997_0968 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398081.1 855449 R 360109 CDS YP_001398082.1 153951296 5390536 complement(856409..856669) 1 NC_009707.1 hypothetical protein 856669 5390536 JJD26997_0969 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398082.1 856409 R 360109 CDS YP_001398083.1 153951865 5388992 complement(856783..857070) 1 NC_009707.1 identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 857070 5388992 JJD26997_0970 Campylobacter jejuni subsp. doylei 269.97 Cro/CI family transcriptional regulator YP_001398083.1 856783 R 360109 CDS YP_001398084.1 153952067 5389967 complement(858106..858780) 1 NC_009707.1 putative cytoplasmic protein 858780 5389967 JJD26997_0973 Campylobacter jejuni subsp. doylei 269.97 putative cytoplasmic protein YP_001398084.1 858106 R 360109 CDS YP_001398085.1 153951514 5388846 complement(858793..859566) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 859566 5388846 JJD26997_0974 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398085.1 858793 R 360109 CDS YP_001398086.1 153952190 5388762 complement(860070..860222) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 860222 5388762 JJD26997_0975 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398086.1 860070 R 360109 CDS YP_001398087.1 153951758 5390269 complement(860485..860610) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 860610 5390269 JJD26997_0976 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398087.1 860485 R 360109 CDS YP_001398088.1 153952557 5390390 860811..861233 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 861233 5390390 JJD26997_0977 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398088.1 860811 D 360109 CDS YP_001398089.1 153951944 5389321 complement(861352..861471) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 861471 5389321 JJD26997_0978 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398089.1 861352 R 360109 CDS YP_001398090.1 153951380 5390283 863399..863620 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 863620 5390283 JJD26997_0981 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398090.1 863399 D 360109 CDS YP_001398091.1 153952613 5388652 863675..863956 1 NC_009707.1 hypothetical protein 863956 5388652 JJD26997_0982 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398091.1 863675 D 360109 CDS YP_001398092.1 153951084 5389942 863937..864428 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 864428 5389942 JJD26997_0983 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398092.1 863937 D 360109 CDS YP_001398093.1 153951704 5389499 complement(864525..864821) 1 NC_009707.1 ankyrin repeat-containing protein 864821 5389499 JJD26997_0984 Campylobacter jejuni subsp. doylei 269.97 ankyrin repeat-containing protein YP_001398093.1 864525 R 360109 CDS YP_001398094.1 153950975 5389128 complement(864923..867469) 1 NC_009707.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 867469 acnB 5389128 acnB Campylobacter jejuni subsp. doylei 269.97 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_001398094.1 864923 R 360109 CDS YP_001398095.1 153952386 5388711 867524..867976 1 NC_009707.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine S-methyltransferase 867976 ogt 5388711 ogt Campylobacter jejuni subsp. doylei 269.97 methylated-DNA--protein-cysteine S-methyltransferase YP_001398095.1 867524 D 360109 CDS YP_001398096.1 153951655 5389631 complement(867968..868909) 1 NC_009707.1 hypothetical protein 868909 5389631 JJD26997_0986 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398096.1 867968 R 360109 CDS YP_001398097.1 153952241 5389341 complement(868913..870799) 1 NC_009707.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 870799 metS 5389341 metS Campylobacter jejuni subsp. doylei 269.97 methionyl-tRNA synthetase YP_001398097.1 868913 R 360109 CDS YP_001398098.1 153951505 5389831 complement(870809..870973) 1 NC_009707.1 hypothetical protein 870973 5389831 JJD26997_0989 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398098.1 870809 R 360109 CDS YP_001398099.1 153952473 5388814 complement(870999..871841) 1 NC_009707.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 871841 fbp 5388814 fbp Campylobacter jejuni subsp. doylei 269.97 fructose-1,6-bisphosphatase YP_001398099.1 870999 R 360109 CDS YP_001398100.1 153951731 5390558 complement(871843..872334) 1 NC_009707.1 identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein MobB 872334 mobB 5390558 mobB Campylobacter jejuni subsp. doylei 269.97 molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_001398100.1 871843 R 360109 CDS YP_001398101.1 153950989 5389117 complement(872812..874437) 1 NC_009707.1 identified by match to protein family HMM PF01464; lytic murein transglycosylase 874437 5389117 JJD26997_0992 Campylobacter jejuni subsp. doylei 269.97 lytic murein transglycosylase YP_001398101.1 872812 R 360109 CDS YP_001398102.1 153951455 5389559 complement(874434..874715) 1 NC_009707.1 identified by match to protein family HMM PF02325; hypothetical protein 874715 5389559 JJD26997_0993 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398102.1 874434 R 360109 CDS YP_001398103.1 153952449 5388693 complement(874718..876013) 1 NC_009707.1 charges one glutamine molecule and pairs it with tRNA(Gln); glutamylglutaminyl-tRNA synthetase 876013 gltX-1 5388693 gltX-1 Campylobacter jejuni subsp. doylei 269.97 glutamylglutaminyl-tRNA synthetase YP_001398103.1 874718 R 360109 CDS YP_001398104.1 153951603 5389748 876099..877223 1 NC_009707.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 877223 5389748 JJD26997_0995 Campylobacter jejuni subsp. doylei 269.97 Ser/Thr protein phosphatase family protein YP_001398104.1 876099 D 360109 CDS YP_001398105.1 153950980 5389951 877220..878020 1 NC_009707.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 878020 psd 5389951 psd Campylobacter jejuni subsp. doylei 269.97 phosphatidylserine decarboxylase YP_001398105.1 877220 D 360109 CDS YP_001398106.1 153952619 5389787 complement(878017..878298) 1 NC_009707.1 identified by match to protein family HMM TIGR00789; FlhB domain-containing protein 878298 5389787 JJD26997_0996 Campylobacter jejuni subsp. doylei 269.97 FlhB domain-containing protein YP_001398106.1 878017 R 360109 CDS YP_001398107.1 153952091 5389969 complement(878295..880391) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 880391 5389969 JJD26997_0998 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398107.1 878295 R 360109 CDS YP_001398108.1 153951385 5390085 complement(880384..881571) 1 NC_009707.1 identified by match to protein family HMM PF07690; major facilitator family protein 881571 5390085 JJD26997_0999 Campylobacter jejuni subsp. doylei 269.97 major facilitator family protein YP_001398108.1 880384 R 360109 CDS YP_001398109.1 153952033 5388722 complement(881549..882052) 1 NC_009707.1 hypothetical protein 882052 5388722 JJD26997_1000 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398109.1 881549 R 360109 CDS YP_001398110.1 153951470 5388935 complement(882052..882267) 1 NC_009707.1 hypothetical protein 882267 5388935 JJD26997_1001 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398110.1 882052 R 360109 CDS YP_001398111.1 153952633 5389768 complement(882378..883652) 1 NC_009707.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 883652 hemL 5389768 hemL Campylobacter jejuni subsp. doylei 269.97 glutamate-1-semialdehyde aminotransferase YP_001398111.1 882378 R 360109 CDS YP_001398112.1 153951847 5390232 complement(883649..883996) 1 NC_009707.1 hypothetical protein 883996 5390232 JJD26997_1003 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398112.1 883649 R 360109 CDS YP_001398113.1 153952430 5388946 884076..884924 1 NC_009707.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 884924 folD 5388946 folD Campylobacter jejuni subsp. doylei 269.97 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001398113.1 884076 D 360109 CDS YP_001398114.1 153951289 5388753 884934..885785 1 NC_009707.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 885785 lepB 5388753 lepB Campylobacter jejuni subsp. doylei 269.97 signal peptidase I YP_001398114.1 884934 D 360109 CDS YP_001398115.1 153952627 5388982 complement(885807..886967) 1 NC_009707.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis MoeA protein 886967 5388982 JJD26997_1006 Campylobacter jejuni subsp. doylei 269.97 molybdopterin biosynthesis MoeA protein YP_001398115.1 885807 R 360109 CDS YP_001398116.1 153951466 5388666 complement(886964..888220) 1 NC_009707.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 888220 murA 5388666 murA Campylobacter jejuni subsp. doylei 269.97 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001398116.1 886964 R 360109 CDS YP_001398117.1 153951868 5389119 888808..889260 1 NC_009707.1 identified by match to protein family HMM PF00892; integral membrane protein 889260 5389119 JJD26997_1010 Campylobacter jejuni subsp. doylei 269.97 integral membrane protein YP_001398117.1 888808 D 360109 CDS YP_001398118.1 153952574 5389526 complement(889247..889813) 1 NC_009707.1 identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; para-aminobenzoate synthase glutamine amidotransferase, component II 889813 pabA 5389526 pabA Campylobacter jejuni subsp. doylei 269.97 para-aminobenzoate synthase glutamine amidotransferase, component II YP_001398118.1 889247 R 360109 CDS YP_001398119.1 153951124 5389229 complement(889810..891594) 1 NC_009707.1 identified by match to protein family HMM PF00425; para-aminobenzoate synthase glutamine amidotransferase, component I 891594 pabB 5389229 pabB Campylobacter jejuni subsp. doylei 269.97 para-aminobenzoate synthase glutamine amidotransferase, component I YP_001398119.1 889810 R 360109 CDS YP_001398120.1 153951127 5390381 complement(891584..892648) 1 NC_009707.1 identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 892648 5390381 JJD26997_1012 Campylobacter jejuni subsp. doylei 269.97 phage integrase family site specific recombinase YP_001398120.1 891584 R 360109 CDS YP_001398121.1 153951481 5389086 893276..893938 1 NC_009707.1 thiol:disulfide interchange protein DsbA 893938 dsbA 5389086 dsbA Campylobacter jejuni subsp. doylei 269.97 thiol:disulfide interchange protein DsbA YP_001398121.1 893276 D 360109 CDS YP_001398122.1 153950974 5389744 893950..894735 1 NC_009707.1 putative disulfide oxidoreductase 894735 dsbB 5389744 dsbB Campylobacter jejuni subsp. doylei 269.97 putative disulfide oxidoreductase YP_001398122.1 893950 D 360109 CDS YP_001398123.1 153952502 5389164 896370..897041 1 NC_009707.1 identified by match to protein family HMM PF01323; putative thiol:disulfide interchange protein DsbA 897041 5389164 JJD26997_1021 Campylobacter jejuni subsp. doylei 269.97 putative thiol:disulfide interchange protein DsbA YP_001398123.1 896370 D 360109 CDS YP_001398124.1 153952406 5389427 complement(897698..898204) 1 NC_009707.1 hypothetical protein 898204 5389427 JJD26997_1024 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398124.1 897698 R 360109 CDS YP_001398125.1 153952189 5389921 complement(898201..898443) 1 NC_009707.1 hypothetical protein 898443 5389921 JJD26997_1025 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398125.1 898201 R 360109 CDS YP_001398126.1 153951166 5390268 complement(898427..899473) 1 NC_009707.1 hypothetical protein 899473 5390268 JJD26997_1026 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398126.1 898427 R 360109 CDS YP_001398127.1 153951195 5388913 complement(899482..901617) 1 NC_009707.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 901617 flhA 5388913 flhA Campylobacter jejuni subsp. doylei 269.97 flagellar biosynthesis protein FlhA YP_001398127.1 899482 R 360109 CDS YP_001398128.1 153952143 5388931 complement(901643..902053) 1 NC_009707.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; putative RrF2 family protein 902053 5388931 JJD26997_1028 Campylobacter jejuni subsp. doylei 269.97 putative RrF2 family protein YP_001398128.1 901643 R 360109 CDS YP_001398129.1 153951769 5389844 902228..902500 1 NC_009707.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 902500 rpsO 5389844 rpsO Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S15 YP_001398129.1 902228 D 360109 CDS YP_001398130.1 153952594 5389040 complement(902582..905419) 1 NC_009707.1 identified by match to protein family HMM PF01580; putative cell division protein FtsK 905419 5389040 JJD26997_1030 Campylobacter jejuni subsp. doylei 269.97 putative cell division protein FtsK YP_001398130.1 902582 R 360109 CDS YP_001398131.1 153951331 5390365 complement(905529..907781) 1 NC_009707.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; lagellar hook-associated protein FlgL 907781 5390365 JJD26997_1031 Campylobacter jejuni subsp. doylei 269.97 lagellar hook-associated protein FlgL YP_001398131.1 905529 R 360109 CDS YP_001398132.1 153951667 5389807 complement(909974..910324) 1 NC_009707.1 phage integrase family site specific recombinase 910324 5389807 JJD26997_1037 Campylobacter jejuni subsp. doylei 269.97 phage integrase family site specific recombinase YP_001398132.1 909974 R 360109 CDS YP_001398133.1 153951085 5389638 910427..910543 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 910543 5389638 JJD26997_1038 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398133.1 910427 D 360109 CDS YP_001398134.1 153951973 5389776 911651..911773 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 911773 5389776 JJD26997_1039 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398134.1 911651 D 360109 CDS YP_001398135.1 153952506 5389680 911953..912111 1 NC_009707.1 hypothetical protein 912111 5389680 JJD26997_1040 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398135.1 911953 D 360109 CDS YP_001398136.1 153951400 5389926 complement(912138..915392) 1 NC_009707.1 identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; autotransporter beta-domain-containing protein 915392 5389926 JJD26997_1041 Campylobacter jejuni subsp. doylei 269.97 autotransporter beta-domain-containing protein YP_001398136.1 912138 R 360109 CDS YP_001398137.1 153952372 5390201 complement(915573..915917) 1 NC_009707.1 identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel incorporation protein HypA 915917 hypA 5390201 hypA Campylobacter jejuni subsp. doylei 269.97 hydrogenase nickel incorporation protein HypA YP_001398137.1 915573 R 360109 CDS YP_001398138.1 153951221 5390274 complement(915917..916891) 1 NC_009707.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 916891 hypE 5390274 hypE Campylobacter jejuni subsp. doylei 269.97 hydrogenase expression/formation protein HypE YP_001398138.1 915917 R 360109 CDS YP_001398139.1 153951949 5389330 complement(916888..917979) 1 NC_009707.1 identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 917979 hypD 5389330 hypD Campylobacter jejuni subsp. doylei 269.97 hydrogenase expression/formation protein HypD YP_001398139.1 916888 R 360109 CDS YP_001398140.1 153951183 5388863 complement(917963..918244) 1 NC_009707.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 918244 hypC 5388863 hypC Campylobacter jejuni subsp. doylei 269.97 hydrogenase assembly chaperone HypC/HupF YP_001398140.1 917963 R 360109 CDS YP_001398141.1 153951524 5389207 complement(918244..918984) 1 NC_009707.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB 918984 hypB 5389207 hypB Campylobacter jejuni subsp. doylei 269.97 hydrogenase nickel incorporation protein HypB YP_001398141.1 918244 R 360109 CDS YP_001398142.1 153950949 5388906 complement(919061..921250) 1 NC_009707.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 921250 hypF 5388906 hypF Campylobacter jejuni subsp. doylei 269.97 [NiFe] hydrogenase maturation protein HypF YP_001398142.1 919061 R 360109 CDS YP_001398143.1 153951900 5389974 complement(921231..922751) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 922751 5389974 JJD26997_1048 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398143.1 921231 R 360109 CDS YP_001398144.1 153951277 5389657 complement(922792..923439) 1 NC_009707.1 identified by match to protein family HMM PF01863; hypothetical protein 923439 5389657 JJD26997_1049 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398144.1 922792 R 360109 CDS YP_001398145.1 153951906 5390313 complement(923415..924731) 1 NC_009707.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 924731 5390313 JJD26997_1050 Campylobacter jejuni subsp. doylei 269.97 MATE efflux family protein YP_001398145.1 923415 R 360109 CDS YP_001398146.1 153951728 5390246 complement(926144..926884) 1 NC_009707.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 926884 pstB 5390246 pstB Campylobacter jejuni subsp. doylei 269.97 phosphate ABC transporter ATP-binding protein YP_001398146.1 926144 R 360109 CDS YP_001398147.1 153952260 5390015 complement(926881..927969) 1 NC_009707.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 927969 5390015 JJD26997_1054 Campylobacter jejuni subsp. doylei 269.97 phosphate ABC transporter permease YP_001398147.1 926881 R 360109 CDS YP_001398148.1 153951247 5389281 complement(927966..928880) 1 NC_009707.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; putative phosphate ABC transporter permease PstC 928880 5389281 JJD26997_1055 Campylobacter jejuni subsp. doylei 269.97 putative phosphate ABC transporter permease PstC YP_001398148.1 927966 R 360109 CDS YP_001398149.1 153952378 5389169 complement(928890..929885) 1 NC_009707.1 putative phosphate ABC transporter periplasmic phosphate-binding protein 929885 5389169 JJD26997_1056 Campylobacter jejuni subsp. doylei 269.97 putative phosphate ABC transporter periplasmic phosphate-binding protein YP_001398149.1 928890 R 360109 CDS YP_001398150.1 153951556 5389805 complement(929901..930029) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 930029 5389805 JJD26997_1057 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398150.1 929901 R 360109 CDS YP_001398151.1 153952118 5389199 930220..930723 1 NC_009707.1 identified by match to protein family HMM PF00210; nonheme iron-containing ferritin 930723 ftn 5389199 ftn Campylobacter jejuni subsp. doylei 269.97 nonheme iron-containing ferritin YP_001398151.1 930220 D 360109 CDS YP_001398152.1 153951266 5390518 930766..932142 1 NC_009707.1 identified by match to protein family HMM PF03062; alginate O-acetyltransferase AlgI 932142 algI 5390518 algI Campylobacter jejuni subsp. doylei 269.97 alginate O-acetyltransferase AlgI YP_001398152.1 930766 D 360109 CDS YP_001398153.1 153952452 5389454 932143..933141 1 NC_009707.1 identified by match to protein family HMM PF04311; hypothetical protein 933141 5389454 JJD26997_1060 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398153.1 932143 D 360109 CDS YP_001398154.1 153950965 5389880 933128..934306 1 NC_009707.1 hypothetical protein 934306 5389880 JJD26997_1061 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398154.1 933128 D 360109 CDS YP_001398155.1 153952165 5389422 complement(934309..935679) 1 NC_009707.1 identified by match to protein family HMM PF02321; outer membrane efflux protein 935679 5389422 JJD26997_1062 Campylobacter jejuni subsp. doylei 269.97 outer membrane efflux protein YP_001398155.1 934309 R 360109 CDS YP_001398156.1 153952463 5389913 complement(935681..937606) 1 NC_009707.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02687; macrolide-specific efflux protein macB 937606 5389913 JJD26997_1063 Campylobacter jejuni subsp. doylei 269.97 macrolide-specific efflux protein macB YP_001398156.1 935681 R 360109 CDS YP_001398157.1 153951952 5389270 complement(937606..938778) 1 NC_009707.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; macrolide-specific efflux protein macA 938778 5389270 JJD26997_1064 Campylobacter jejuni subsp. doylei 269.97 macrolide-specific efflux protein macA YP_001398157.1 937606 R 360109 CDS YP_001398158.1 153952204 5389715 complement(938857..940047) 1 NC_009707.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; carboxypeptidase 940047 5389715 JJD26997_1065 Campylobacter jejuni subsp. doylei 269.97 carboxypeptidase YP_001398158.1 938857 R 360109 CDS YP_001398159.1 153951854 5389849 941015..942718 1 NC_009707.1 identified by match to protein family HMM PF00085; match to protein family HMM PF02683; thiol:disulfide interchange protein DsbD 942718 dsbD 5389849 dsbD Campylobacter jejuni subsp. doylei 269.97 thiol:disulfide interchange protein DsbD YP_001398159.1 941015 D 360109 CDS YP_001398160.1 153952391 5390189 942886..944229 1 NC_009707.1 identified by match to protein family HMM PF00209; putative sodium-dependent transporter 944229 5390189 JJD26997_1069 Campylobacter jejuni subsp. doylei 269.97 putative sodium-dependent transporter YP_001398160.1 942886 D 360109 CDS YP_001398161.1 153951230 5389419 complement(944221..945096) 1 NC_009707.1 hypothetical protein 945096 5389419 JJD26997_1068 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398161.1 944221 R 360109 CDS YP_001398162.1 153951751 5388655 complement(945083..946036) 1 NC_009707.1 identified by match to protein family HMM PF00691; chemotaxis protein MotB 946036 5388655 JJD26997_1070 Campylobacter jejuni subsp. doylei 269.97 chemotaxis protein MotB YP_001398162.1 945083 R 360109 CDS YP_001398163.1 153952302 5389096 complement(946026..947477) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 947477 5389096 JJD26997_1071 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398163.1 946026 R 360109 CDS YP_001398164.1 153952225 5389819 complement(947572..948636) 1 NC_009707.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 948636 fbaA 5389819 fbaA Campylobacter jejuni subsp. doylei 269.97 fructose-bisphosphate aldolase YP_001398164.1 947572 R 360109 CDS YP_001398165.1 153951254 5390126 complement(948636..949457) 1 NC_009707.1 identified by match to protein family HMM PF00639; major antigenic peptide PEB4 949457 5390126 JJD26997_1073 Campylobacter jejuni subsp. doylei 269.97 major antigenic peptide PEB4 YP_001398165.1 948636 R 360109 CDS YP_001398166.1 153952219 5390025 949538..950164 1 NC_009707.1 identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 950164 nth 5390025 nth Campylobacter jejuni subsp. doylei 269.97 endonuclease III YP_001398166.1 949538 D 360109 CDS YP_001398167.1 153951154 5389879 950161..950811 1 NC_009707.1 identified by match to protein family HMM PF01223; DNA/RNA non-specific endonuclease 950811 5389879 JJD26997_1075 Campylobacter jejuni subsp. doylei 269.97 DNA/RNA non-specific endonuclease YP_001398167.1 950161 D 360109 CDS YP_001398168.1 153952268 5389945 950822..951454 1 NC_009707.1 identified by match to protein family HMM PF03458; hypothetical protein 951454 5389945 JJD26997_1076 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398168.1 950822 D 360109 CDS YP_001398169.1 153951710 5389685 951512..951952 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 951952 5389685 JJD26997_1077 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398169.1 951512 D 360109 CDS YP_001398170.1 153952193 5390059 951949..952164 1 NC_009707.1 putative lipoprotein 952164 5390059 JJD26997_1079 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001398170.1 951949 D 360109 CDS YP_001398171.1 153952456 5389116 complement(952154..952861) 1 NC_009707.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00740; putative methyltransferase 952861 5389116 JJD26997_1078 Campylobacter jejuni subsp. doylei 269.97 putative methyltransferase YP_001398171.1 952154 R 360109 CDS YP_001398172.1 153951303 5389213 complement(952851..953705) 1 NC_009707.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 953705 5389213 JJD26997_1080 Campylobacter jejuni subsp. doylei 269.97 bifunctional riboflavin kinase/FMN adenylyltransferase YP_001398172.1 952851 R 360109 CDS YP_001398173.1 153952064 5389848 complement(953671..954432) 1 NC_009707.1 identified by match to protein family HMM PF01728; hemolysin A 954432 tlyA 5389848 tlyA Campylobacter jejuni subsp. doylei 269.97 hemolysin A YP_001398173.1 953671 R 360109 CDS YP_001398174.1 153952455 5390553 complement(955298..957241) 1 NC_009707.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 957241 ligA 5390553 ligA Campylobacter jejuni subsp. doylei 269.97 NAD-dependent DNA ligase LigA YP_001398174.1 955298 R 360109 CDS YP_001398175.1 153951513 5389212 complement(957242..958384) 1 NC_009707.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 958384 folP 5389212 folP Campylobacter jejuni subsp. doylei 269.97 dihydropteroate synthase YP_001398175.1 957242 R 360109 CDS YP_001398176.1 153951907 5388750 complement(958386..958985) 1 NC_009707.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 958985 5388750 JJD26997_1085 Campylobacter jejuni subsp. doylei 269.97 DNA polymerase III subunit delta' YP_001398176.1 958386 R 360109 CDS YP_001398177.1 153951292 5388941 complement(958991..959527) 1 NC_009707.1 hypothetical protein 959527 5388941 JJD26997_1086 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398177.1 958991 R 360109 CDS YP_001398178.1 153952034 5390321 complement(959528..960730) 1 NC_009707.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 960730 5390321 JJD26997_1087 Campylobacter jejuni subsp. doylei 269.97 aspartate kinase YP_001398178.1 959528 R 360109 CDS YP_001398179.1 153952382 5389896 complement(960732..961202) 1 NC_009707.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 961202 nidH 5389896 nidH Campylobacter jejuni subsp. doylei 269.97 dinucleoside polyphosphate hydrolase YP_001398179.1 960732 R 360109 CDS YP_001398180.1 153951392 5390441 961302..962369 1 NC_009707.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 962369 5390441 JJD26997_1089 Campylobacter jejuni subsp. doylei 269.97 coproporphyrinogen III oxidase YP_001398180.1 961302 D 360109 CDS YP_001398181.1 153951649 5389555 962837..963574 1 NC_009707.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC 963574 tatC 5389555 tatC Campylobacter jejuni subsp. doylei 269.97 Sec-independent protein translocase TatC YP_001398181.1 962837 D 360109 CDS YP_001398182.1 153951843 5389650 963564..964595 1 NC_009707.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 964595 queA 5389650 queA Campylobacter jejuni subsp. doylei 269.97 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001398182.1 963564 D 360109 CDS YP_001398183.1 153951223 5389811 complement(966455..967411) 1 NC_009707.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 967411 lpxD 5389811 lpxD Campylobacter jejuni subsp. doylei 269.97 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_001398183.1 966455 R 360109 CDS YP_001398184.1 153952293 5389332 complement(967408..967872) 1 NC_009707.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 967872 ilvH 5389332 ilvH Campylobacter jejuni subsp. doylei 269.97 acetolactate synthase 3 regulatory subunit YP_001398184.1 967408 R 360109 CDS YP_001398185.1 153951512 5388620 complement(967869..969569) 1 NC_009707.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine resistant; also known as acetolactate synthase 3 large subunit; acetolactate synthase 3 catalytic subunit 969569 ilvB 5388620 ilvB Campylobacter jejuni subsp. doylei 269.97 acetolactate synthase 3 catalytic subunit YP_001398185.1 967869 R 360109 CDS YP_001398186.1 153951299 5389687 complement(969846..970865) 1 NC_009707.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 970865 ribB 5389687 ribB Campylobacter jejuni subsp. doylei 269.97 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein YP_001398186.1 969846 R 360109 CDS YP_001398187.1 153951818 5388893 971341..972540 1 NC_009707.1 identified by match to protein family HMM PF00589; site-specific recombinase phage integrase family protein 972540 5388893 JJD26997_1101 Campylobacter jejuni subsp. doylei 269.97 site-specific recombinase phage integrase family protein YP_001398187.1 971341 D 360109 CDS YP_001398188.1 153952233 5389401 complement(973229..973435) 1 NC_009707.1 hypothetical protein 973435 5389401 JJD26997_1103 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398188.1 973229 R 360109 CDS YP_001398189.1 153951327 5389431 complement(973471..974214) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 974214 5389431 JJD26997_1104 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398189.1 973471 R 360109 CDS YP_001398190.1 153951875 5390279 complement(974241..974636) 1 NC_009707.1 phage protein 974636 5390279 JJD26997_1105 Campylobacter jejuni subsp. doylei 269.97 phage protein YP_001398190.1 974241 R 360109 CDS YP_001398191.1 153951126 5390214 complement(974683..974919) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 974919 5390214 JJD26997_1106 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398191.1 974683 R 360109 CDS YP_001398192.1 153952016 5390383 complement(974969..975274) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 975274 5390383 JJD26997_1107 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398192.1 974969 R 360109 CDS YP_001398193.1 153951057 5389071 complement(975291..975551) 1 NC_009707.1 hypothetical protein 975551 5389071 JJD26997_1108 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398193.1 975291 R 360109 CDS YP_001398194.1 153952580 5390457 complement(975532..976221) 1 NC_009707.1 hypothetical protein 976221 5390457 JJD26997_1109 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398194.1 975532 R 360109 CDS YP_001398195.1 153951688 5390290 complement(976221..976955) 1 NC_009707.1 hypothetical protein 976955 5390290 JJD26997_1110 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398195.1 976221 R 360109 CDS YP_001398196.1 153951150 5389741 complement(976952..977812) 1 NC_009707.1 hypothetical protein 977812 5389741 JJD26997_1111 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398196.1 976952 R 360109 CDS YP_001398197.1 153952178 5389206 complement(977802..978545) 1 NC_009707.1 identified by match to protein family HMM PF03374; DNA-binding protein Roi 978545 5389206 JJD26997_1112 Campylobacter jejuni subsp. doylei 269.97 DNA-binding protein Roi YP_001398197.1 977802 R 360109 CDS YP_001398198.1 153950988 5390195 complement(978548..979216) 1 NC_009707.1 putative phage anti-repressor protein 979216 5390195 JJD26997_1113 Campylobacter jejuni subsp. doylei 269.97 putative phage anti-repressor protein YP_001398198.1 978548 R 360109 CDS YP_001398199.1 153951961 5389558 complement(979261..979389) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 979389 5389558 JJD26997_1114 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398199.1 979261 R 360109 CDS YP_001398200.1 153952151 5390050 complement(979361..979537) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 979537 5390050 JJD26997_1115 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398200.1 979361 R 360109 CDS YP_001398201.1 153950973 5389599 complement(979765..979995) 1 NC_009707.1 hypothetical protein 979995 5389599 JJD26997_1116 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398201.1 979765 R 360109 CDS YP_001398202.1 153951335 5390045 complement(980005..980298) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 980298 5390045 JJD26997_1117 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398202.1 980005 R 360109 CDS YP_001398203.1 153952226 5389386 complement(980336..980596) 1 NC_009707.1 hypothetical protein 980596 5389386 JJD26997_1118 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398203.1 980336 R 360109 CDS YP_001398204.1 153951087 5388820 complement(980587..980856) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 980856 5388820 JJD26997_1119 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398204.1 980587 R 360109 CDS YP_001398205.1 153952631 5389778 complement(981104..981274) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 981274 5389778 JJD26997_1120 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398205.1 981104 R 360109 CDS YP_001398206.1 153951330 5390230 complement(981673..981945) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 981945 5390230 JJD26997_1121 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398206.1 981673 R 360109 CDS YP_001398207.1 153952237 5389654 982351..982794 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 982794 5389654 JJD26997_1122 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398207.1 982351 D 360109 CDS YP_001398208.1 153952244 5389760 complement(982848..983006) 1 NC_009707.1 DNA/RNA non-specific endonuclease 983006 5389760 JJD26997_1123 Campylobacter jejuni subsp. doylei 269.97 DNA/RNA non-specific endonuclease YP_001398208.1 982848 R 360109 CDS YP_001398209.1 153952309 5390053 complement(983127..983846) 1 NC_009707.1 identified by match to protein family HMM PF00717; putative phage repressor protein 983846 5390053 JJD26997_1124 Campylobacter jejuni subsp. doylei 269.97 putative phage repressor protein YP_001398209.1 983127 R 360109 CDS YP_001398210.1 153951566 5388885 983985..984194 1 NC_009707.1 hypothetical protein 984194 5388885 JJD26997_1125 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398210.1 983985 D 360109 CDS YP_001398211.1 153952510 5390486 985372..986022 1 NC_009707.1 hypothetical protein 986022 5390486 JJD26997_1128 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398211.1 985372 D 360109 CDS YP_001398212.1 153951723 5389603 986047..986430 1 NC_009707.1 identified by match to protein family HMM PF05866; crossover junction endodeoxyribonuclease RusA superfamily protein 986430 5389603 JJD26997_1129 Campylobacter jejuni subsp. doylei 269.97 crossover junction endodeoxyribonuclease RusA superfamily protein YP_001398212.1 986047 D 360109 CDS YP_001398213.1 153952323 5388638 986423..986794 1 NC_009707.1 hypothetical protein 986794 5388638 JJD26997_1130 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398213.1 986423 D 360109 CDS YP_001398214.1 153951467 5388759 986791..988083 1 NC_009707.1 putative terminase B protein 988083 5388759 JJD26997_1131 Campylobacter jejuni subsp. doylei 269.97 putative terminase B protein YP_001398214.1 986791 D 360109 CDS YP_001398215.1 153952660 5388589 988073..988345 1 NC_009707.1 hypothetical protein 988345 5388589 JJD26997_1132 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398215.1 988073 D 360109 CDS YP_001398216.1 153951607 5390260 988326..989849 1 NC_009707.1 hypothetical protein 989849 5390260 JJD26997_1133 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398216.1 988326 D 360109 CDS YP_001398217.1 153951091 5389854 989836..990039 1 NC_009707.1 hypothetical protein 990039 5389854 JJD26997_1134 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398217.1 989836 D 360109 CDS YP_001398218.1 153951590 5389130 990029..990673 1 NC_009707.1 hypothetical protein 990673 5389130 JJD26997_1135 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398218.1 990029 D 360109 CDS YP_001398219.1 153952335 5390153 990684..991052 1 NC_009707.1 hypothetical protein 991052 5390153 JJD26997_1136 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398219.1 990684 D 360109 CDS YP_001398220.1 153951585 5389287 991138..992181 1 NC_009707.1 hypothetical protein 992181 5389287 JJD26997_1137 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398220.1 991138 D 360109 CDS YP_001398221.1 153952289 5388697 complement(996315..996506) 1 NC_009707.1 hypothetical protein 996506 5388697 JJD26997_1139 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398221.1 996315 R 360109 CDS YP_001398222.1 153951462 5390018 996938..997972 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 997972 5390018 JJD26997_1140 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398222.1 996938 D 360109 CDS YP_001398223.1 153951958 5389663 997973..998374 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 998374 5389663 JJD26997_1141 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398223.1 997973 D 360109 CDS YP_001398224.1 153951218 5390057 998352..998543 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 998543 5390057 JJD26997_1142 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398224.1 998352 D 360109 CDS YP_001398225.1 153952509 5389313 998546..1000207 1 NC_009707.1 hypothetical protein 1000207 5389313 JJD26997_1143 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398225.1 998546 D 360109 CDS YP_001398226.1 153951389 5389602 1000526..1001734 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1001734 5389602 JJD26997_1144 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398226.1 1000526 D 360109 CDS YP_001398227.1 153952639 5390461 1001754..1001933 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1001933 5390461 JJD26997_1145 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398227.1 1001754 D 360109 CDS YP_001398228.1 153951650 5389551 1001946..1002452 1 NC_009707.1 hypothetical protein 1002452 5389551 JJD26997_1146 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398228.1 1001946 D 360109 CDS YP_001398229.1 153951081 5389651 1002495..1002989 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1002989 5389651 JJD26997_1147 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398229.1 1002495 D 360109 CDS YP_001398230.1 153952068 5388633 1002992..1003372 1 NC_009707.1 identified by match to protein family HMM PF07087; hypothetical protein 1003372 5388633 JJD26997_1148 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398230.1 1002992 D 360109 CDS YP_001398231.1 153951233 5388847 1003369..1003842 1 NC_009707.1 hypothetical protein 1003842 5388847 JJD26997_1149 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398231.1 1003369 D 360109 CDS YP_001398232.1 153951634 5389157 1004411..1004608 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1004608 5389157 JJD26997_1151 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398232.1 1004411 D 360109 CDS YP_001398233.1 153952374 5390169 1004601..1005077 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1005077 5390169 JJD26997_1152 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398233.1 1004601 D 360109 CDS YP_001398234.1 153951145 5389052 1005089..1006858 1 NC_009707.1 hypothetical protein 1006858 5389052 JJD26997_1153 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398234.1 1005089 D 360109 CDS YP_001398235.1 153951888 5389294 complement(1007073..1009970) 1 NC_009707.1 identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; autotransporter beta-domain-containing protein 1009970 5389294 JJD26997_1154 Campylobacter jejuni subsp. doylei 269.97 autotransporter beta-domain-containing protein YP_001398235.1 1007073 R 360109 CDS YP_001398236.1 153951374 5388848 complement(1010767..1011147) 1 NC_009707.1 hypothetical protein 1011147 5388848 JJD26997_1155 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398236.1 1010767 R 360109 CDS YP_001398237.1 153952035 5390454 complement(1011949..1012734) 1 NC_009707.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 1012734 5390454 JJD26997_1163 Campylobacter jejuni subsp. doylei 269.97 His/Glu/Gln/Arg/opine ABC transporter permease YP_001398237.1 1011949 R 360109 CDS YP_001398238.1 153952422 5389897 complement(1012757..1013962) 1 NC_009707.1 identified by match to protein family HMM PF02687; permease 1013962 5389897 JJD26997_1164 Campylobacter jejuni subsp. doylei 269.97 permease YP_001398238.1 1012757 R 360109 CDS YP_001398239.1 153951521 5389745 complement(1013959..1016547) 1 NC_009707.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 1016547 secA 5389745 secA Campylobacter jejuni subsp. doylei 269.97 preprotein translocase subunit SecA YP_001398239.1 1013959 R 360109 CDS YP_001398240.1 153951157 5389736 1016662..1017156 1 NC_009707.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1017156 lolA 5389736 lolA Campylobacter jejuni subsp. doylei 269.97 outer-membrane lipoprotein carrier protein YP_001398240.1 1016662 D 360109 CDS YP_001398241.1 153952560 5390529 complement(1017153..1017887) 1 NC_009707.1 hypothetical protein 1017887 5390529 JJD26997_1166 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398241.1 1017153 R 360109 CDS YP_001398242.1 153951209 5389585 1019289..1020623 1 NC_009707.1 putative lipoprotein 1020623 5389585 JJD26997_1169 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001398242.1 1019289 D 360109 CDS YP_001398243.1 153951543 5389796 complement(1020638..1021510) 1 NC_009707.1 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 1021510 5389796 JJD26997_1170 Campylobacter jejuni subsp. doylei 269.97 carbon-nitrogen family hydrolase YP_001398243.1 1020638 R 360109 CDS YP_001398244.1 153952307 5388659 complement(1021507..1022394) 1 NC_009707.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1022394 5388659 JJD26997_1171 Campylobacter jejuni subsp. doylei 269.97 cation efflux family protein YP_001398244.1 1021507 R 360109 CDS YP_001398245.1 153951748 5388883 complement(1022391..1023368) 1 NC_009707.1 identified by match to protein family HMM PF04371; peptidyl-arginine deiminase family protein 1023368 5388883 JJD26997_1172 Campylobacter jejuni subsp. doylei 269.97 peptidyl-arginine deiminase family protein YP_001398245.1 1022391 R 360109 CDS YP_001398246.1 153952457 5389636 complement(1023467..1023901) 1 NC_009707.1 identified by match to protein family HMM PF03724; putative lipoprotein 1023901 5389636 JJD26997_1173 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001398246.1 1023467 R 360109 CDS YP_001398247.1 153952539 5388724 complement(1030062..1030391) 1 NC_009707.1 methylated-DNA--protein-cysteine methyltransferase 1030391 5388724 JJD26997_1178 Campylobacter jejuni subsp. doylei 269.97 methylated-DNA--protein-cysteine methyltransferase YP_001398247.1 1030062 R 360109 CDS YP_001398248.1 153951795 5389522 1030446..1032992 1 NC_009707.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1032992 acnB 5389522 acnB Campylobacter jejuni subsp. doylei 269.97 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_001398248.1 1030446 D 360109 CDS YP_001398249.1 153952145 5389350 1033094..1034290 1 NC_009707.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 1034290 5389350 JJD26997_1180 Campylobacter jejuni subsp. doylei 269.97 ankyrin repeat-containing protein YP_001398249.1 1033094 D 360109 CDS YP_001398250.1 153950969 5390380 1034287..1035036 1 NC_009707.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 1035036 5390380 JJD26997_1181 Campylobacter jejuni subsp. doylei 269.97 short chain dehydrogenase/reductase family oxidoreductase YP_001398250.1 1034287 D 360109 CDS YP_001398251.1 153952113 5388959 1035033..1036766 1 NC_009707.1 identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein 1036766 5388959 JJD26997_1182 Campylobacter jejuni subsp. doylei 269.97 Na+/H+ antiporter family protein YP_001398251.1 1035033 D 360109 CDS YP_001398252.1 153952276 5389240 1036763..1037836 1 NC_009707.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 1037836 trmA 5389240 trmA Campylobacter jejuni subsp. doylei 269.97 tRNA (uracil-5-)-methyltransferase YP_001398252.1 1036763 D 360109 CDS YP_001398253.1 153951090 5390234 complement(1037823..1038239) 1 NC_009707.1 identified by match to protein family HMM PF04323; hypothetical protein 1038239 5390234 JJD26997_1183 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398253.1 1037823 R 360109 CDS YP_001398254.1 153951666 5390492 1038357..1038599 1 NC_009707.1 CoA-binding domain-containing protein 1038599 5390492 JJD26997_1185 Campylobacter jejuni subsp. doylei 269.97 CoA-binding domain-containing protein YP_001398254.1 1038357 D 360109 CDS YP_001398255.1 153951864 5389637 1038599..1039810 1 NC_009707.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 1039810 ilvA 5389637 ilvA Campylobacter jejuni subsp. doylei 269.97 threonine dehydratase YP_001398255.1 1038599 D 360109 CDS YP_001398256.1 153951132 5389670 complement(1039807..1040532) 1 NC_009707.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1040532 truA 5389670 truA Campylobacter jejuni subsp. doylei 269.97 tRNA pseudouridine synthase A YP_001398256.1 1039807 R 360109 CDS YP_001398257.1 153951328 5390432 complement(1040529..1041554) 1 NC_009707.1 identified by match to protein family HMM PF03739; hypothetical protein 1041554 5390432 JJD26997_1188 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398257.1 1040529 R 360109 CDS YP_001398258.1 153952057 5390281 complement(1041554..1042330) 1 NC_009707.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750; A24 family peptidase 1042330 5390281 JJD26997_1189 Campylobacter jejuni subsp. doylei 269.97 A24 family peptidase YP_001398258.1 1041554 R 360109 CDS YP_001398259.1 153951523 5389272 complement(1042327..1042995) 1 NC_009707.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase 1042995 uppS 5389272 uppS Campylobacter jejuni subsp. doylei 269.97 undecaprenyl diphosphate synthase YP_001398259.1 1042327 R 360109 CDS YP_001398260.1 153952495 5390552 complement(1042999..1043610) 1 NC_009707.1 hypothetical protein 1043610 5390552 JJD26997_1191 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398260.1 1042999 R 360109 CDS YP_001398261.1 153951889 5388840 complement(1043613..1044767) 1 NC_009707.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 1044767 coaBC 5388840 coaBC Campylobacter jejuni subsp. doylei 269.97 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_001398261.1 1043613 R 360109 CDS YP_001398262.1 153952664 5388849 complement(1044764..1046053) 1 NC_009707.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 1046053 glmU 5388849 glmU Campylobacter jejuni subsp. doylei 269.97 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_001398262.1 1044764 R 360109 CDS YP_001398263.1 153951658 5390507 1046196..1046930 1 NC_009707.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1046930 fliP 5390507 fliP Campylobacter jejuni subsp. doylei 269.97 flagellar biosynthesis protein FliP YP_001398263.1 1046196 D 360109 CDS YP_001398264.1 153952661 5388649 complement(1046927..1047139) 1 NC_009707.1 hypothetical protein 1047139 5388649 JJD26997_1194 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398264.1 1046927 R 360109 CDS YP_001398265.1 153952630 5390082 complement(1047495..1048265) 1 NC_009707.1 identified by match to protein family HMM PF00497; amino acid-binding protein 1048265 5390082 JJD26997_1196 Campylobacter jejuni subsp. doylei 269.97 amino acid-binding protein YP_001398265.1 1047495 R 360109 CDS YP_001398266.1 153951624 5389136 complement(1048319..1049032) 1 NC_009707.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1049032 kdsB 5389136 kdsB Campylobacter jejuni subsp. doylei 269.97 3-deoxy-manno-octulosonate cytidylyltransferase YP_001398266.1 1048319 R 360109 CDS YP_001398267.1 153951140 5389436 complement(1049029..1050441) 1 NC_009707.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1050441 thrC 5389436 thrC Campylobacter jejuni subsp. doylei 269.97 threonine synthase YP_001398267.1 1049029 R 360109 CDS YP_001398268.1 153951853 5390075 complement(1050438..1051364) 1 NC_009707.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1051364 lpxK 5390075 lpxK Campylobacter jejuni subsp. doylei 269.97 tetraacyldisaccharide 4'-kinase YP_001398268.1 1050438 R 360109 CDS YP_001398269.1 153951376 5389724 complement(1051368..1052108) 1 NC_009707.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1052108 nadE 5389724 nadE Campylobacter jejuni subsp. doylei 269.97 NAD synthetase YP_001398269.1 1051368 R 360109 CDS YP_001398270.1 153952315 5390400 1052182..1052778 1 NC_009707.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 1052778 5390400 JJD26997_1201 Campylobacter jejuni subsp. doylei 269.97 metallo-beta-lactamase family protein YP_001398270.1 1052182 D 360109 CDS YP_001398271.1 153951574 5390029 1052791..1053096 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1053096 5390029 JJD26997_1202 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398271.1 1052791 D 360109 CDS YP_001398272.1 153952514 5390249 complement(1053137..1053916) 1 NC_009707.1 Acts on the hydroxyl group at position 7 of the steroid frame; 7-alpha-hydroxysteroid dehydrogenase 1053916 5390249 JJD26997_1203 Campylobacter jejuni subsp. doylei 269.97 7-alpha-hydroxysteroid dehydrogenase YP_001398272.1 1053137 R 360109 CDS YP_001398273.1 153952051 5390176 complement(1053916..1054812) 1 NC_009707.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1054812 dapA 5390176 dapA Campylobacter jejuni subsp. doylei 269.97 dihydrodipicolinate synthase YP_001398273.1 1053916 R 360109 CDS YP_001398274.1 153951043 5390332 complement(1054805..1056055) 1 NC_009707.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 1056055 5390332 JJD26997_1205 Campylobacter jejuni subsp. doylei 269.97 M16 family peptidase YP_001398274.1 1054805 R 360109 CDS YP_001398275.1 153951497 5390062 complement(1056052..1057110) 1 NC_009707.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1057110 pyrD 5390062 pyrD Campylobacter jejuni subsp. doylei 269.97 dihydroorotate dehydrogenase 2 YP_001398275.1 1056052 R 360109 CDS YP_001398276.1 153952330 5389457 complement(1057142..1058884) 1 NC_009707.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; putative ABC transporter ATP-binding protein/permease MsbA 1058884 5389457 JJD26997_1207 Campylobacter jejuni subsp. doylei 269.97 putative ABC transporter ATP-binding protein/permease MsbA YP_001398276.1 1057142 R 360109 CDS YP_001398277.1 153951726 5390513 complement(1058877..1060265) 1 NC_009707.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1060265 cysS 5390513 cysS Campylobacter jejuni subsp. doylei 269.97 cysteinyl-tRNA synthetase YP_001398277.1 1058877 R 360109 CDS YP_001398278.1 153952479 5390013 complement(1060265..1061716) 1 NC_009707.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 1061716 mviN 5390013 mviN Campylobacter jejuni subsp. doylei 269.97 integral membrane protein MviN YP_001398278.1 1060265 R 360109 CDS YP_001398279.1 153951076 5388823 1061820..1063679 1 NC_009707.1 hypothetical protein 1063679 5388823 JJD26997_1210 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398279.1 1061820 D 360109 CDS YP_001398280.1 153952036 5389794 1063655..1064206 1 NC_009707.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1064206 ruvA 5389794 ruvA Campylobacter jejuni subsp. doylei 269.97 Holliday junction DNA helicase RuvA YP_001398280.1 1063655 D 360109 CDS YP_001398281.1 153952610 5389898 1064216..1065256 1 NC_009707.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 1065256 ddl 5389898 ddl Campylobacter jejuni subsp. doylei 269.97 D-alanyl-alanine synthetase A YP_001398281.1 1064216 D 360109 CDS YP_001398282.1 153951827 5388673 1065316..1065531 1 NC_009707.1 identified by match to protein family HMM TIGR01552; prevent-host-death family protein 1065531 5388673 JJD26997_1213 Campylobacter jejuni subsp. doylei 269.97 prevent-host-death family protein YP_001398282.1 1065316 D 360109 CDS YP_001398283.1 153952209 5390585 1065533..1066252 1 NC_009707.1 identified by match to protein family HMM PF00561; hypothetical protein 1066252 5390585 JJD26997_1214 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398283.1 1065533 D 360109 CDS YP_001398284.1 153951182 5389490 1066253..1067680 1 NC_009707.1 identified by match to protein family HMM PF08245; Mur ligase family protein 1067680 5389490 JJD26997_1216 Campylobacter jejuni subsp. doylei 269.97 Mur ligase family protein YP_001398284.1 1066253 D 360109 CDS YP_001398285.1 153952623 5389698 complement(1068586..1069605) 1 NC_009707.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1069605 5389698 JJD26997_1218 Campylobacter jejuni subsp. doylei 269.97 sensor histidine kinase YP_001398285.1 1068586 R 360109 CDS YP_001398286.1 153951872 5390415 complement(1069609..1070430) 1 NC_009707.1 identified by match to protein family HMM PF03008; hypothetical protein 1070430 5390415 JJD26997_1219 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398286.1 1069609 R 360109 CDS YP_001398287.1 153952409 5390330 1070529..1071797 1 NC_009707.1 identified by match to protein family HMM PF00266; aminotransferase 1071797 5390330 JJD26997_1221 Campylobacter jejuni subsp. doylei 269.97 aminotransferase YP_001398287.1 1070529 D 360109 CDS YP_001398288.1 153951464 5389566 complement(1071794..1072618) 1 NC_009707.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1072618 purU 5389566 purU Campylobacter jejuni subsp. doylei 269.97 formyltetrahydrofolate deformylase YP_001398288.1 1071794 R 360109 CDS YP_001398289.1 153951070 5389142 complement(1072615..1073733) 1 NC_009707.1 identified by match to protein family HMM PF01743; polyA polymerase family protein 1073733 5389142 JJD26997_1222 Campylobacter jejuni subsp. doylei 269.97 polyA polymerase family protein YP_001398289.1 1072615 R 360109 CDS YP_001398290.1 153952026 5389535 complement(1073702..1074193) 1 NC_009707.1 hypothetical protein 1074193 5389535 JJD26997_1223 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398290.1 1073702 R 360109 CDS YP_001398291.1 153951629 5388811 complement(1074190..1074435) 1 NC_009707.1 hypothetical protein 1074435 5388811 JJD26997_1224 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398291.1 1074190 R 360109 CDS YP_001398292.1 153951930 5389107 complement(1074517..1074690) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1074690 5389107 JJD26997_1225 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398292.1 1074517 R 360109 CDS YP_001398293.1 153951959 5389258 complement(1074704..1075042) 1 NC_009707.1 napD protein 1075042 napD 5389258 napD Campylobacter jejuni subsp. doylei 269.97 napD protein YP_001398293.1 1074704 R 360109 CDS YP_001398294.1 153950948 5388971 complement(1077714..1078241) 1 NC_009707.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thiol peroxidase 1078241 tpx 5388971 tpx Campylobacter jejuni subsp. doylei 269.97 thiol peroxidase YP_001398294.1 1077714 R 360109 CDS YP_001398295.1 153951004 5388864 complement(1079070..1081100) 1 NC_009707.1 identified by match to protein family HMM PF00580; putative ATP-dependent DNA helicase 1081100 5388864 JJD26997_1235 Campylobacter jejuni subsp. doylei 269.97 putative ATP-dependent DNA helicase YP_001398295.1 1079070 R 360109 CDS YP_001398296.1 153951426 5389996 1081228..1082184 1 NC_009707.1 hypothetical protein 1082184 5389996 JJD26997_1236 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398296.1 1081228 D 360109 CDS YP_001398297.1 153952361 5389692 1082208..1084820 1 NC_009707.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1084820 valS 5389692 valS Campylobacter jejuni subsp. doylei 269.97 valyl-tRNA synthetase YP_001398297.1 1082208 D 360109 CDS YP_001398298.1 153951679 5390282 1084825..1085835 1 NC_009707.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1085835 5390282 JJD26997_1238 Campylobacter jejuni subsp. doylei 269.97 ABC transporter ATP-binding protein YP_001398298.1 1084825 D 360109 CDS YP_001398299.1 153952628 5389719 1085832..1086743 1 NC_009707.1 identified by match to protein family HMM PF00528; ABC transporter permease 1086743 5389719 JJD26997_1239 Campylobacter jejuni subsp. doylei 269.97 ABC transporter permease YP_001398299.1 1085832 D 360109 CDS YP_001398300.1 153950992 5389134 1086936..1087709 1 NC_009707.1 identified by match to protein family HMM PF03180; NLPA family lipoprotein 1087709 5389134 JJD26997_1240 Campylobacter jejuni subsp. doylei 269.97 NLPA family lipoprotein YP_001398300.1 1086936 D 360109 CDS YP_001398301.1 153951885 5388781 1087758..1088528 1 NC_009707.1 identified by match to protein family HMM PF03180; NLPA family lipoprotein 1088528 5388781 JJD26997_1241 Campylobacter jejuni subsp. doylei 269.97 NLPA family lipoprotein YP_001398301.1 1087758 D 360109 CDS YP_001398302.1 153951137 5389185 1088538..1089314 1 NC_009707.1 identified by match to protein family HMM PF03180; NLPA family lipoprotein 1089314 5389185 JJD26997_1242 Campylobacter jejuni subsp. doylei 269.97 NLPA family lipoprotein YP_001398302.1 1088538 D 360109 CDS YP_001398303.1 153952192 5389451 1089398..1090060 1 NC_009707.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1090060 flgA 5389451 flgA Campylobacter jejuni subsp. doylei 269.97 flagellar basal body P-ring biosynthesis protein FlgA YP_001398303.1 1089398 D 360109 CDS YP_001398304.1 153952584 5389115 1090057..1090620 1 NC_009707.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1090620 5389115 JJD26997_1244 Campylobacter jejuni subsp. doylei 269.97 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_001398304.1 1090057 D 360109 CDS YP_001398305.1 153951621 5389125 1090660..1091136 1 NC_009707.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1091136 coaD 5389125 coaD Campylobacter jejuni subsp. doylei 269.97 phosphopantetheine adenylyltransferase YP_001398305.1 1090660 D 360109 CDS YP_001398306.1 153951111 5389326 1091127..1091705 1 NC_009707.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1091705 tmk 5389326 tmk Campylobacter jejuni subsp. doylei 269.97 thymidylate kinase YP_001398306.1 1091127 D 360109 CDS YP_001398307.1 153951862 5389304 1091702..1092928 1 NC_009707.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1092928 hisS 5389304 hisS Campylobacter jejuni subsp. doylei 269.97 histidyl-tRNA synthetase YP_001398307.1 1091702 D 360109 CDS YP_001398308.1 153952578 5389574 1092928..1094760 1 NC_009707.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 1094760 speA 5389574 speA Campylobacter jejuni subsp. doylei 269.97 arginine decarboxylase YP_001398308.1 1092928 D 360109 CDS YP_001398309.1 153951619 5389872 1094761..1095399 1 NC_009707.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase 1095399 cysE 5389872 cysE Campylobacter jejuni subsp. doylei 269.97 serine acetyltransferase YP_001398309.1 1094761 D 360109 CDS YP_001398310.1 153951572 5389968 1095560..1096729 1 NC_009707.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1096729 5389968 JJD26997_1250 Campylobacter jejuni subsp. doylei 269.97 aspartate aminotransferase YP_001398310.1 1095560 D 360109 CDS YP_001398311.1 153952524 5390247 1096735..1097523 1 NC_009707.1 identified by match to protein family HMM TIGR01444; FkbM family methyltransferase 1097523 5390247 JJD26997_1251 Campylobacter jejuni subsp. doylei 269.97 FkbM family methyltransferase YP_001398311.1 1096735 D 360109 CDS YP_001398312.1 153951188 5389628 complement(1097547..1097888) 1 NC_009707.1 hypothetical protein 1097888 5389628 JJD26997_1252 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398312.1 1097547 R 360109 CDS YP_001398313.1 153951033 5389328 complement(1098325..1099566) 1 NC_009707.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISHa1675 transposase B 1099566 5389328 JJD26997_1254 Campylobacter jejuni subsp. doylei 269.97 ISHa1675 transposase B YP_001398313.1 1098325 R 360109 CDS YP_001398314.1 153952271 5390542 complement(1101178..1103049) 1 NC_009707.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1103049 dnaK 5390542 dnaK Campylobacter jejuni subsp. doylei 269.97 molecular chaperone DnaK YP_001398314.1 1101178 R 360109 CDS YP_001398315.1 153951449 5390193 complement(1103071..1103601) 1 NC_009707.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1103601 grpE 5390193 grpE Campylobacter jejuni subsp. doylei 269.97 heat shock protein GrpE YP_001398315.1 1103071 R 360109 CDS YP_001398316.1 153951762 5389919 complement(1103598..1104320) 1 NC_009707.1 Acts as a negative regulator of the grpE-dnaK-dnaJ and groELS class I heat shock operons by preventing heat-shock induction; heat-inducible transcription repressor 1104320 5389919 JJD26997_1260 Campylobacter jejuni subsp. doylei 269.97 heat-inducible transcription repressor YP_001398316.1 1103598 R 360109 CDS YP_001398317.1 153950984 5389486 complement(1104614..1106722) 1 NC_009707.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; ferric receptor CfrA 1106722 cfrA 5389486 cfrA Campylobacter jejuni subsp. doylei 269.97 ferric receptor CfrA YP_001398317.1 1104614 R 360109 CDS YP_001398318.1 153951554 5389720 1107040..1107747 1 NC_009707.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; protein TonB 1107747 5389720 JJD26997_1262 Campylobacter jejuni subsp. doylei 269.97 protein TonB YP_001398318.1 1107040 D 360109 CDS YP_001398319.1 153952572 5390144 complement(1111481..1111597) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1111597 5390144 JJD26997_1265 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398319.1 1111481 R 360109 CDS YP_001398320.1 153952304 5389227 complement(1111704..1112915) 1 NC_009707.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR01272; L-fucose-proton symporter 1112915 5389227 JJD26997_1266 Campylobacter jejuni subsp. doylei 269.97 L-fucose-proton symporter YP_001398320.1 1111704 R 360109 CDS YP_001398321.1 153951754 5390467 complement(1112912..1114555) 1 NC_009707.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1114555 pgi 5390467 pgi Campylobacter jejuni subsp. doylei 269.97 glucose-6-phosphate isomerase YP_001398321.1 1112912 R 360109 CDS YP_001398322.1 153952530 5390520 complement(1114565..1115563) 1 NC_009707.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1115563 glk 5390520 glk Campylobacter jejuni subsp. doylei 269.97 glucokinase YP_001398322.1 1114565 R 360109 CDS YP_001398323.1 153951117 5390522 complement(1115544..1116224) 1 NC_009707.1 identified by match to protein family HMM TIGR01198; 6-phosphogluconolactonase 1116224 pgl 5390522 pgl Campylobacter jejuni subsp. doylei 269.97 6-phosphogluconolactonase YP_001398323.1 1115544 R 360109 CDS YP_001398324.1 153951845 5389916 complement(1116388..1117788) 1 NC_009707.1 identified by match to protein family HMM PF00479; match to protein family HMM PF02781; match to protein family HMM TIGR00871; glucose-6-phosphate 1-dehydrogenase 1117788 zwf 5389916 zwf Campylobacter jejuni subsp. doylei 269.97 glucose-6-phosphate 1-dehydrogenase YP_001398324.1 1116388 R 360109 CDS YP_001398325.1 153951295 5389907 1117937..1119739 1 NC_009707.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1119739 edd 5389907 edd Campylobacter jejuni subsp. doylei 269.97 phosphogluconate dehydratase YP_001398325.1 1117937 D 360109 CDS YP_001398326.1 153951892 5388991 1119749..1120372 1 NC_009707.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182; KHG/KDPG aldolase 1120372 5388991 JJD26997_1272 Campylobacter jejuni subsp. doylei 269.97 KHG/KDPG aldolase YP_001398326.1 1119749 D 360109 CDS YP_001398327.1 153951346 5389104 1122802..1122969 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1122969 5389104 JJD26997_1276 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398327.1 1122802 D 360109 CDS YP_001398328.1 153952126 5389575 1122953..1123708 1 NC_009707.1 identified by match to protein family HMM PF00497; cjaC protein 1123708 cjaC 5389575 cjaC Campylobacter jejuni subsp. doylei 269.97 cjaC protein YP_001398328.1 1122953 D 360109 CDS YP_001398329.1 153952328 5390265 1127232..1128986 1 NC_009707.1 identified by match to protein family HMM PF07719; hypothetical protein 1128986 5390265 JJD26997_1279 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398329.1 1127232 D 360109 CDS YP_001398330.1 153952115 5388601 1129100..1130083 1 NC_009707.1 identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383; magnesium and cobalt transport protein CorA 1130083 corA 5388601 corA Campylobacter jejuni subsp. doylei 269.97 magnesium and cobalt transport protein CorA YP_001398330.1 1129100 D 360109 CDS YP_001398331.1 153951811 5389242 1130104..1130646 1 NC_009707.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 1130646 mogA 5389242 mogA Campylobacter jejuni subsp. doylei 269.97 molybdenum cofactor biosynthesis protein MogA YP_001398331.1 1130104 D 360109 CDS YP_001398332.1 153951526 5388996 complement(1130643..1130828) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1130828 5388996 JJD26997_1281 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398332.1 1130643 R 360109 CDS YP_001398333.1 153951342 5388908 1130957..1132144 1 NC_009707.1 identified by match to protein family HMM PF01435; M48 family peptidase 1132144 5388908 JJD26997_1283 Campylobacter jejuni subsp. doylei 269.97 M48 family peptidase YP_001398333.1 1130957 D 360109 CDS YP_001398334.1 153951215 5390104 1132141..1132956 1 NC_009707.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; HemK family modification methylase 1132956 5390104 JJD26997_1284 Campylobacter jejuni subsp. doylei 269.97 HemK family modification methylase YP_001398334.1 1132141 D 360109 CDS YP_001398335.1 153952153 5389059 1132969..1133439 1 NC_009707.1 hypothetical protein 1133439 5389059 JJD26997_1285 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398335.1 1132969 D 360109 CDS YP_001398336.1 153952656 5389601 1133478..1134218 1 NC_009707.1 identified by match to protein family HMM PF00669; flagellin subunit protein FlaC 1134218 flaC 5389601 flaC Campylobacter jejuni subsp. doylei 269.97 flagellin subunit protein FlaC YP_001398336.1 1133478 D 360109 CDS YP_001398337.1 153951807 5390422 1134255..1134887 1 NC_009707.1 identified by match to protein family HMM TIGR00044; hypothetical protein 1134887 5390422 JJD26997_1287 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398337.1 1134255 D 360109 CDS YP_001398338.1 153951559 5390069 complement(1134902..1138504) 1 NC_009707.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1138504 dnaE 5390069 dnaE Campylobacter jejuni subsp. doylei 269.97 DNA polymerase III subunit alpha YP_001398338.1 1134902 R 360109 CDS YP_001398339.1 153951061 5388594 complement(1138954..1139283) 1 NC_009707.1 identified by match to protein family HMM PF03960; hypothetical protein 1139283 5388594 JJD26997_1289 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398339.1 1138954 R 360109 CDS YP_001398340.1 153951365 5390131 complement(1139280..1140620) 1 NC_009707.1 identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358; 3-deoxy-7-phosphoheptulonate synthase 1140620 5390131 JJD26997_1290 Campylobacter jejuni subsp. doylei 269.97 3-deoxy-7-phosphoheptulonate synthase YP_001398340.1 1139280 R 360109 CDS YP_001398341.1 153951080 5389770 complement(1141191..1141547) 1 NC_009707.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1141547 rplS 5389770 rplS Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L19 YP_001398341.1 1141191 R 360109 CDS YP_001398342.1 153952047 5388632 complement(1141558..1142262) 1 NC_009707.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1142262 trmD 5388632 trmD Campylobacter jejuni subsp. doylei 269.97 tRNA (guanine-N(1)-)-methyltransferase YP_001398342.1 1141558 R 360109 CDS YP_001398343.1 153951260 5389354 complement(1142259..1142798) 1 NC_009707.1 identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273; 16S rRNA processing protein RimM 1142798 rimM 5389354 rimM Campylobacter jejuni subsp. doylei 269.97 16S rRNA processing protein RimM YP_001398343.1 1142259 R 360109 CDS YP_001398344.1 153951995 5388969 complement(1142791..1143033) 1 NC_009707.1 hypothetical protein 1143033 5388969 JJD26997_1295 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398344.1 1142791 R 360109 CDS YP_001398345.1 153952325 5389493 complement(1143036..1143263) 1 NC_009707.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1143263 rpsP 5389493 rpsP Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S16 YP_001398345.1 1143036 R 360109 CDS YP_001398346.1 153952174 5389398 complement(1143328..1144665) 1 NC_009707.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1144665 ffh 5389398 ffh Campylobacter jejuni subsp. doylei 269.97 signal recognition particle protein YP_001398346.1 1143328 R 360109 CDS YP_001398347.1 153952563 5389160 complement(1144733..1145485) 1 NC_009707.1 identified by match to protein family HMM PF00849; RNA pseudouridine synthase family protein 1145485 5389160 JJD26997_1298 Campylobacter jejuni subsp. doylei 269.97 RNA pseudouridine synthase family protein YP_001398347.1 1144733 R 360109 CDS YP_001398348.1 153951353 5390207 complement(1145466..1146623) 1 NC_009707.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 1146623 waaA 5390207 waaA Campylobacter jejuni subsp. doylei 269.97 3-deoxy-D-manno-octulosonic-acid transferase YP_001398348.1 1145466 R 360109 CDS YP_001398349.1 153951350 5389976 complement(1146620..1147336) 1 NC_009707.1 identified by match to protein family HMM PF02591; hypothetical protein 1147336 5389976 JJD26997_1300 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398349.1 1146620 R 360109 CDS YP_001398350.1 153951851 5389647 complement(1147346..1148071) 1 NC_009707.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein 1148071 5389647 JJD26997_1301 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398350.1 1147346 R 360109 CDS YP_001398351.1 153951108 5389994 complement(1148058..1148921) 1 NC_009707.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1148921 glyQ 5389994 glyQ Campylobacter jejuni subsp. doylei 269.97 glycyl-tRNA synthetase subunit alpha YP_001398351.1 1148058 R 360109 CDS YP_001398352.1 153951610 5390092 complement(1148933..1149469) 1 NC_009707.1 hypothetical protein 1149469 5390092 JJD26997_1303 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398352.1 1148933 R 360109 CDS YP_001398353.1 153951595 5388994 complement(1149479..1149973) 1 NC_009707.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 1149973 purE 5388994 purE Campylobacter jejuni subsp. doylei 269.97 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001398353.1 1149479 R 360109 CDS YP_001398354.1 153952648 5389122 complement(1149974..1151227) 1 NC_009707.1 identified by match to protein family HMM PF01136; U32 family peptidase 1151227 5389122 JJD26997_1305 Campylobacter jejuni subsp. doylei 269.97 U32 family peptidase YP_001398354.1 1149974 R 360109 CDS YP_001398355.1 153951447 5389360 complement(1151224..1151919) 1 NC_009707.1 hypothetical protein 1151919 5389360 JJD26997_1306 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398355.1 1151224 R 360109 CDS YP_001398356.1 153952403 5389042 1152108..1153538 1 NC_009707.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 1153538 glnA 5389042 glnA Campylobacter jejuni subsp. doylei 269.97 glutamine synthetase, type I YP_001398356.1 1152108 D 360109 CDS YP_001398357.1 153952075 5388661 complement(1153606..1154397) 1 NC_009707.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1154397 flgG 5388661 flgG Campylobacter jejuni subsp. doylei 269.97 flagellar basal body rod protein FlgG YP_001398357.1 1153606 R 360109 CDS YP_001398358.1 153952418 5390160 complement(1154426..1155238) 1 NC_009707.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar basal-body rod protein 1155238 5390160 JJD26997_1309 Campylobacter jejuni subsp. doylei 269.97 flagellar basal-body rod protein YP_001398358.1 1154426 R 360109 CDS YP_001398359.1 153952223 5390541 complement(1155394..1156506) 1 NC_009707.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1156506 ftsZ 5390541 ftsZ Campylobacter jejuni subsp. doylei 269.97 cell division protein FtsZ YP_001398359.1 1155394 R 360109 CDS YP_001398360.1 153951048 5390124 complement(1156522..1157904) 1 NC_009707.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 1157904 ftsA 5390124 ftsA Campylobacter jejuni subsp. doylei 269.97 cell division protein FtsA YP_001398360.1 1156522 R 360109 CDS YP_001398361.1 153951630 5388889 complement(1157907..1159397) 1 NC_009707.1 peptidyl-prolyl cis-trans isomerase D-like protein 1159397 5388889 JJD26997_1312 Campylobacter jejuni subsp. doylei 269.97 peptidyl-prolyl cis-trans isomerase D-like protein YP_001398361.1 1157907 R 360109 CDS YP_001398362.1 153952604 5388828 1159562..1160494 1 NC_009707.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 1160494 mraW 5388828 mraW Campylobacter jejuni subsp. doylei 269.97 S-adenosyl-methyltransferase MraW YP_001398362.1 1159562 D 360109 CDS YP_001398363.1 153951509 5389554 1160494..1161360 1 NC_009707.1 hypothetical protein 1161360 5389554 JJD26997_1315 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398363.1 1160494 D 360109 CDS YP_001398364.1 153952652 5389396 complement(1161348..1161839) 1 NC_009707.1 hypothetical protein 1161839 5389396 JJD26997_1314 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398364.1 1161348 R 360109 CDS YP_001398365.1 153952367 5388911 complement(1165767..1166957) 1 NC_009707.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1166957 ackA 5388911 ackA Campylobacter jejuni subsp. doylei 269.97 acetate kinase YP_001398365.1 1165767 R 360109 CDS YP_001398366.1 153951611 5388758 complement(1166971..1168506) 1 NC_009707.1 identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651; phosphate acetyltransferase 1168506 pta 5388758 pta Campylobacter jejuni subsp. doylei 269.97 phosphate acetyltransferase YP_001398366.1 1166971 R 360109 CDS YP_001398367.1 153951340 5388995 1168567..1169265 1 NC_009707.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 1169265 flgH 5388995 flgH Campylobacter jejuni subsp. doylei 269.97 flagellar basal body L-ring protein YP_001398367.1 1168567 D 360109 CDS YP_001398368.1 153951482 5390300 complement(1169295..1170368) 1 NC_009707.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1170368 ispG 5390300 ispG Campylobacter jejuni subsp. doylei 269.97 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_001398368.1 1169295 R 360109 CDS YP_001398369.1 153950991 5388897 complement(1170434..1172287) 1 NC_009707.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1172287 priA 5388897 priA Campylobacter jejuni subsp. doylei 269.97 primosome assembly protein PriA YP_001398369.1 1170434 R 360109 CDS YP_001398370.1 153952008 5389163 complement(1172269..1172706) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1172706 5389163 JJD26997_1323 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398370.1 1172269 R 360109 CDS YP_001398371.1 153951636 5388871 complement(1172703..1172945) 1 NC_009707.1 hypothetical protein 1172945 5388871 JJD26997_1324 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398371.1 1172703 R 360109 CDS YP_001398372.1 153952387 5389470 complement(1172935..1173165) 1 NC_009707.1 hypothetical protein 1173165 5389470 JJD26997_1325 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398372.1 1172935 R 360109 CDS YP_001398373.1 153952519 5389632 1173322..1175295 1 NC_009707.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1175295 uvrB 5389632 uvrB Campylobacter jejuni subsp. doylei 269.97 excinuclease ABC subunit B YP_001398373.1 1173322 D 360109 CDS YP_001398374.1 153951809 5389221 complement(1175791..1177041) 1 NC_009707.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 1177041 rpoN 5389221 rpoN Campylobacter jejuni subsp. doylei 269.97 RNA polymerase factor sigma-54 YP_001398374.1 1175791 R 360109 CDS YP_001398375.1 153952417 5390597 complement(1177041..1177778) 1 NC_009707.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1177778 5390597 JJD26997_1330 Campylobacter jejuni subsp. doylei 269.97 ABC transporter ATP-binding protein YP_001398375.1 1177041 R 360109 CDS YP_001398376.1 153951276 5390540 complement(1177762..1178169) 1 NC_009707.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 1178169 5390540 JJD26997_1331 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398376.1 1177762 R 360109 CDS YP_001398377.1 153952275 5390312 complement(1178166..1178411) 1 NC_009707.1 identified by match to protein family HMM PF01479; S4 domain-containing protein 1178411 5390312 JJD26997_1332 Campylobacter jejuni subsp. doylei 269.97 S4 domain-containing protein YP_001398377.1 1178166 R 360109 CDS YP_001398378.1 153951560 5390233 1178442..1178570 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1178570 5390233 JJD26997_1333 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398378.1 1178442 D 360109 CDS YP_001398379.1 153952360 5388595 1178567..1179787 1 NC_009707.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1179787 argG 5388595 argG Campylobacter jejuni subsp. doylei 269.97 argininosuccinate synthase YP_001398379.1 1178567 D 360109 CDS YP_001398380.1 153951618 5389369 1179800..1180243 1 NC_009707.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1180243 rplI 5389369 rplI Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L9 YP_001398380.1 1179800 D 360109 CDS YP_001398381.1 153952111 5389966 1180243..1180785 1 NC_009707.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1180785 hslV 5389966 hslV Campylobacter jejuni subsp. doylei 269.97 ATP-dependent protease peptidase subunit YP_001398381.1 1180243 D 360109 CDS YP_001398382.1 153951339 5389578 1180782..1182101 1 NC_009707.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1182101 hslU 5389578 hslU Campylobacter jejuni subsp. doylei 269.97 ATP-dependent protease ATP-binding subunit HslU YP_001398382.1 1180782 D 360109 CDS YP_001398383.1 153951129 5390299 1182098..1182973 1 NC_009707.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1182973 era 5390299 era Campylobacter jejuni subsp. doylei 269.97 GTP-binding protein Era YP_001398383.1 1182098 D 360109 CDS YP_001398384.1 153952273 5389845 1182963..1184066 1 NC_009707.1 hypothetical protein 1184066 5389845 JJD26997_1339 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398384.1 1182963 D 360109 CDS YP_001398385.1 153951489 5389591 1184059..1184607 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1184607 5389591 JJD26997_1340 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398385.1 1184059 D 360109 CDS YP_001398386.1 153952131 5388778 complement(1184815..1184940) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1184940 5388778 JJD26997_1341 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398386.1 1184815 R 360109 CDS YP_001398387.1 153951072 5388802 1185708..1187231 1 NC_009707.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; di-/tripeptide transporter 1187231 5388802 JJD26997_1344 Campylobacter jejuni subsp. doylei 269.97 di-/tripeptide transporter YP_001398387.1 1185708 D 360109 CDS YP_001398388.1 153951626 5389403 1187234..1188784 1 NC_009707.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; di-/tripeptide transporter 1188784 5389403 JJD26997_1345 Campylobacter jejuni subsp. doylei 269.97 di-/tripeptide transporter YP_001398388.1 1187234 D 360109 CDS YP_001398389.1 153952590 5389438 1188800..1190590 1 NC_009707.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321; M24 family peptidase 1190590 5389438 JJD26997_1346 Campylobacter jejuni subsp. doylei 269.97 M24 family peptidase YP_001398389.1 1188800 D 360109 CDS YP_001398390.1 153951586 5389084 complement(1190674..1192479) 1 NC_009707.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 1192479 pbpC 5389084 pbpC Campylobacter jejuni subsp. doylei 269.97 penicillin-binding protein 2 YP_001398390.1 1190674 R 360109 CDS YP_001398391.1 153952439 5388797 complement(1192480..1192974) 1 NC_009707.1 hypothetical protein 1192974 5388797 JJD26997_1348 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398391.1 1192480 R 360109 CDS YP_001398392.1 153952494 5390600 complement(1192971..1193570) 1 NC_009707.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1193570 engB 5390600 engB Campylobacter jejuni subsp. doylei 269.97 ribosome biogenesis GTP-binding protein YsxC YP_001398392.1 1192971 R 360109 CDS YP_001398393.1 153951767 5389660 complement(1193567..1194028) 1 NC_009707.1 identified by match to protein family HMM PF03968; OstA family protein 1194028 5389660 JJD26997_1350 Campylobacter jejuni subsp. doylei 269.97 OstA family protein YP_001398393.1 1193567 R 360109 CDS YP_001398394.1 153952396 5389038 complement(1194010..1194444) 1 NC_009707.1 identified by match to protein family HMM PF06835; hypothetical protein 1194444 5389038 JJD26997_1351 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398394.1 1194010 R 360109 CDS YP_001398395.1 153951171 5390006 complement(1194516..1195004) 1 NC_009707.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670; YrbI family phosphatase 1195004 5390006 JJD26997_1352 Campylobacter jejuni subsp. doylei 269.97 YrbI family phosphatase YP_001398395.1 1194516 R 360109 CDS YP_001398396.1 153952168 5389699 complement(1195010..1195837) 1 NC_009707.1 identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein A 1195837 rlpA 5389699 rlpA Campylobacter jejuni subsp. doylei 269.97 rare lipoprotein A YP_001398396.1 1195010 R 360109 CDS YP_001398397.1 153950947 5390388 complement(1195797..1196915) 1 NC_009707.1 identified by match to protein family HMM PF01464; match to protein family HMM PF01476; putative membrane-bound lytic murein transglycosylase D 1196915 5390388 JJD26997_1354 Campylobacter jejuni subsp. doylei 269.97 putative membrane-bound lytic murein transglycosylase D YP_001398397.1 1195797 R 360109 CDS YP_001398398.1 153951957 5389972 complement(1196915..1197730) 1 NC_009707.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 1197730 5389972 JJD26997_1355 Campylobacter jejuni subsp. doylei 269.97 TatD family hydrolase YP_001398398.1 1196915 R 360109 CDS YP_001398399.1 153952521 5390056 complement(1197721..1198965) 1 NC_009707.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator/GGDEF domain-containing protein 1198965 5390056 JJD26997_1356 Campylobacter jejuni subsp. doylei 269.97 response regulator/GGDEF domain-containing protein YP_001398399.1 1197721 R 360109 CDS YP_001398400.1 153951745 5389569 complement(1199068..1200591) 1 NC_009707.1 identified by match to protein family HMM PF02463; DNA repair protein RecN 1200591 recN 5389569 recN Campylobacter jejuni subsp. doylei 269.97 DNA repair protein RecN YP_001398400.1 1199068 R 360109 CDS YP_001398401.1 153952170 5389434 complement(1200591..1201451) 1 NC_009707.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1201451 pnk 5389434 pnk Campylobacter jejuni subsp. doylei 269.97 inorganic polyphosphate/ATP-NAD kinase YP_001398401.1 1200591 R 360109 CDS YP_001398402.1 153951485 5388732 1201542..1203293 1 NC_009707.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1203293 aspS 5388732 aspS Campylobacter jejuni subsp. doylei 269.97 aspartyl-tRNA synthetase YP_001398402.1 1201542 D 360109 CDS YP_001398403.1 153952659 5389866 1203290..1203868 1 NC_009707.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1203868 adk 5389866 adk Campylobacter jejuni subsp. doylei 269.97 adenylate kinase YP_001398403.1 1203290 D 360109 CDS YP_001398404.1 153951591 5390259 1203878..1204396 1 NC_009707.1 identified by match to protein family HMM PF00719; inorganic pyrophosphatase 1204396 ppa 5390259 ppa Campylobacter jejuni subsp. doylei 269.97 inorganic pyrophosphatase YP_001398404.1 1203878 D 360109 CDS YP_001398405.1 153951089 5390154 1204440..1204937 1 NC_009707.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 1204937 msrA 5390154 msrA Campylobacter jejuni subsp. doylei 269.97 methionine sulfoxide reductase A YP_001398405.1 1204440 D 360109 CDS YP_001398406.1 153951394 5390224 complement(1205487..1205876) 1 NC_009707.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1205876 5390224 JJD26997_1364 Campylobacter jejuni subsp. doylei 269.97 Holliday junction resolvase-like protein YP_001398406.1 1205487 R 360109 CDS YP_001398407.1 153952380 5389195 complement(1205873..1206646) 1 NC_009707.1 identified by match to protein family HMM PF02481; DNA processing protein A 1206646 dprA 5389195 dprA Campylobacter jejuni subsp. doylei 269.97 DNA processing protein A YP_001398407.1 1205873 R 360109 CDS YP_001398408.1 153952202 5390582 complement(1206636..1207259) 1 NC_009707.1 identified by match to protein family HMM PF04748; hypothetical protein 1207259 5390582 JJD26997_1366 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398408.1 1206636 R 360109 CDS YP_001398409.1 153952188 5390166 complement(1207263..1208285) 1 NC_009707.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1208285 ilvC 5390166 ilvC Campylobacter jejuni subsp. doylei 269.97 ketol-acid reductoisomerase YP_001398409.1 1207263 R 360109 CDS YP_001398410.1 153951181 5390267 1208404..1210338 1 NC_009707.1 identified by match to protein family HMM PF00773; match to protein family HMM PF08206; RNB-like protein 1210338 5390267 JJD26997_1368 Campylobacter jejuni subsp. doylei 269.97 RNB-like protein YP_001398410.1 1208404 D 360109 CDS YP_001398411.1 153951750 5388727 1210331..1211296 1 NC_009707.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1211296 5388727 JJD26997_1369 Campylobacter jejuni subsp. doylei 269.97 DNA polymerase III subunit delta YP_001398411.1 1210331 D 360109 CDS YP_001398412.1 153952551 5389095 complement(1211544..1214411) 1 NC_009707.1 identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; autotransporter beta-domain-containing protein 1214411 5389095 JJD26997_1370 Campylobacter jejuni subsp. doylei 269.97 autotransporter beta-domain-containing protein YP_001398412.1 1211544 R 360109 CDS YP_001398413.1 153951828 5389193 complement(1215045..1216427) 1 NC_009707.1 unwinds double stranded DNA; replicative DNA helicase 1216427 dnaB 5389193 dnaB Campylobacter jejuni subsp. doylei 269.97 replicative DNA helicase YP_001398413.1 1215045 R 360109 CDS YP_001398414.1 153951009 5389547 complement(1216518..1217453) 1 NC_009707.1 identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase family protein 1217453 5389547 JJD26997_1372 Campylobacter jejuni subsp. doylei 269.97 pyridine nucleotide-disulfide oxidoreductase family protein YP_001398414.1 1216518 R 360109 CDS YP_001398415.1 153952217 5389051 complement(1217460..1217582) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1217582 5389051 JJD26997_1373 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398415.1 1217460 R 360109 CDS YP_001398416.1 153951806 5389877 1217628..1218713 1 NC_009707.1 hypothetical protein 1218713 5389877 JJD26997_1375 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398416.1 1217628 D 360109 CDS YP_001398417.1 153951114 5390068 complement(1218710..1218958) 1 NC_009707.1 hypothetical protein 1218958 5390068 JJD26997_1374 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398417.1 1218710 R 360109 CDS YP_001398418.1 153951522 5389541 complement(1219008..1220012) 1 NC_009707.1 hypothetical protein 1220012 5389541 JJD26997_1376 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398418.1 1219008 R 360109 CDS YP_001398419.1 153952066 5390551 complement(1220022..1220975) 1 NC_009707.1 identified by match to protein family HMM PF06166; hypothetical protein 1220975 5390551 JJD26997_1377 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398419.1 1220022 R 360109 CDS YP_001398420.1 153951786 5389817 complement(1220962..1221654) 1 NC_009707.1 identified by match to protein family HMM PF06149; hypothetical protein 1221654 5389817 JJD26997_1378 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398420.1 1220962 R 360109 CDS YP_001398421.1 153951475 5389799 complement(1221811..1222380) 1 NC_009707.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1222380 efp 5389799 efp Campylobacter jejuni subsp. doylei 269.97 elongation factor P YP_001398421.1 1221811 R 360109 CDS YP_001398422.1 153952651 5389316 complement(1222812..1223003) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1223003 5389316 JJD26997_1380 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398422.1 1222812 R 360109 CDS YP_001398423.1 153951338 5389888 complement(1223068..1223454) 1 NC_009707.1 flagellin specific chaperone; flagellar protein FliS 1223454 fliS 5389888 fliS Campylobacter jejuni subsp. doylei 269.97 flagellar protein FliS YP_001398423.1 1223068 R 360109 CDS YP_001398424.1 153952081 5390298 complement(1223466..1225406) 1 NC_009707.1 Also called hook-associated protein 2; involved in flagellin assembly; flagellar capping protein 1225406 fliD 5390298 fliD Campylobacter jejuni subsp. doylei 269.97 flagellar capping protein YP_001398424.1 1223466 R 360109 CDS YP_001398425.1 153951082 5388910 complement(1225409..1225774) 1 NC_009707.1 possibly involved in flagella export; flagellar protein FlaG 1225774 flaG 5388910 flaG Campylobacter jejuni subsp. doylei 269.97 flagellar protein FlaG YP_001398425.1 1225409 R 360109 CDS YP_001398426.1 153951825 5389497 complement(1225922..1227724) 1 NC_009707.1 identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1227724 5389497 JJD26997_1384 Campylobacter jejuni subsp. doylei 269.97 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_001398426.1 1225922 R 360109 CDS YP_001398427.1 153952621 5390583 complement(1227721..1228644) 1 NC_009707.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1228644 hemC 5390583 hemC Campylobacter jejuni subsp. doylei 269.97 porphobilinogen deaminase YP_001398427.1 1227721 R 360109 CDS YP_001398428.1 153951659 5389971 complement(1228641..1229030) 1 NC_009707.1 hypothetical protein 1229030 5389971 JJD26997_1386 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398428.1 1228641 R 360109 CDS YP_001398429.1 153952152 5388650 complement(1229027..1230736) 1 NC_009707.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1230736 proS 5388650 proS Campylobacter jejuni subsp. doylei 269.97 prolyl-tRNA synthetase YP_001398429.1 1229027 R 360109 CDS YP_001398430.1 153951207 5389600 complement(1230720..1232018) 1 NC_009707.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1232018 hemA 5389600 hemA Campylobacter jejuni subsp. doylei 269.97 glutamyl-tRNA reductase YP_001398430.1 1230720 R 360109 CDS YP_001398431.1 153951500 5390434 complement(1232018..1232911) 1 NC_009707.1 identified by match to protein family HMM PF00348; polyprenyl synthetase family protein 1232911 5390434 JJD26997_1389 Campylobacter jejuni subsp. doylei 269.97 polyprenyl synthetase family protein YP_001398431.1 1232018 R 360109 CDS YP_001398432.1 153952039 5390179 complement(1232924..1233460) 1 NC_009707.1 hypothetical protein 1233460 5390179 JJD26997_1390 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398432.1 1232924 R 360109 CDS YP_001398433.1 153952249 5389932 complement(1233463..1233726) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1233726 5389932 JJD26997_1391 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398433.1 1233463 R 360109 CDS YP_001398434.1 153951531 5389595 complement(1233864..1234421) 1 NC_009707.1 identified by match to protein family HMM PF01558; 2-oxoglutarate-acceptor oxidoreductase subunit OorC 1234421 oorC 5389595 oorC Campylobacter jejuni subsp. doylei 269.97 2-oxoglutarate-acceptor oxidoreductase subunit OorC YP_001398434.1 1233864 R 360109 CDS YP_001398435.1 153952478 5389061 complement(1234418..1235263) 1 NC_009707.1 identified by match to protein family HMM PF02775; 2-oxoglutarate-acceptor oxidoreductase subunit OorB 1235263 oorB 5389061 oorB Campylobacter jejuni subsp. doylei 269.97 2-oxoglutarate-acceptor oxidoreductase subunit OorB YP_001398435.1 1234418 R 360109 CDS YP_001398436.1 153951934 5389173 complement(1235264..1236388) 1 NC_009707.1 identified by match to protein family HMM PF01855; 2-oxoglutarate-acceptor oxidoreductase subunit OorA 1236388 oorA 5389173 oorA Campylobacter jejuni subsp. doylei 269.97 2-oxoglutarate-acceptor oxidoreductase subunit OorA YP_001398436.1 1235264 R 360109 CDS YP_001398437.1 153952020 5389835 complement(1236397..1236708) 1 NC_009707.1 identified by match to protein family HMM PF00037; 2-oxoglutarate-acceptor oxidoreductase subunit OorD 1236708 oorD 5389835 oorD Campylobacter jejuni subsp. doylei 269.97 2-oxoglutarate-acceptor oxidoreductase subunit OorD YP_001398437.1 1236397 R 360109 CDS YP_001398438.1 153951047 5390430 complement(1236721..1237590) 1 NC_009707.1 identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthase subunit alpha 1237590 sucD 5390430 sucD Campylobacter jejuni subsp. doylei 269.97 succinyl-CoA synthase subunit alpha YP_001398438.1 1236721 R 360109 CDS YP_001398439.1 153952227 5390024 complement(1237600..1238763) 1 NC_009707.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1238763 sucC 5390024 sucC Campylobacter jejuni subsp. doylei 269.97 succinyl-CoA synthetase subunit beta YP_001398439.1 1237600 R 360109 CDS YP_001398440.1 153951258 5388821 complement(1238764..1239666) 1 NC_009707.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; malate dehydrogenase 1239666 mdh 5388821 mdh Campylobacter jejuni subsp. doylei 269.97 malate dehydrogenase YP_001398440.1 1238764 R 360109 CDS YP_001398441.1 153951562 5388967 complement(1239663..1241966) 1 NC_009707.1 identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178; isocitrate dehydrogenase 1241966 icd 5388967 icd Campylobacter jejuni subsp. doylei 269.97 isocitrate dehydrogenase YP_001398441.1 1239663 R 360109 CDS YP_001398442.1 153951582 5388928 complement(1241984..1244515) 1 NC_009707.1 hypothetical protein 1244515 5388928 JJD26997_1400 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398442.1 1241984 R 360109 CDS YP_001398443.1 153952589 5389216 1244382..1245470 1 NC_009707.1 identified by match to protein family HMM PF02618; hypothetical protein 1245470 5389216 JJD26997_1401 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398443.1 1244382 D 360109 CDS YP_001398444.1 153951648 5389083 1245551..1245982 1 NC_009707.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1245982 flgB 5389083 flgB Campylobacter jejuni subsp. doylei 269.97 flagellar basal body rod protein FlgB YP_001398444.1 1245551 D 360109 CDS YP_001398445.1 153951079 5389448 1245992..1246486 1 NC_009707.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1246486 flgC 5389448 flgC Campylobacter jejuni subsp. doylei 269.97 flagellar basal body rod protein FlgC YP_001398445.1 1245992 D 360109 CDS YP_001398446.1 153951288 5388631 1246493..1246786 1 NC_009707.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1246786 fliE 5388631 fliE Campylobacter jejuni subsp. doylei 269.97 flagellar hook-basal body protein FliE YP_001398446.1 1246493 D 360109 CDS YP_001398447.1 153952665 5389612 1246793..1248601 1 NC_009707.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 1248601 5389612 JJD26997_1406 Campylobacter jejuni subsp. doylei 269.97 penicillin-binding protein YP_001398447.1 1246793 D 360109 CDS YP_001398448.1 153952646 5390483 complement(1250350..1250784) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1250784 5390483 JJD26997_1411 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398448.1 1250350 R 360109 CDS YP_001398449.1 153952435 5388606 complement(1250784..1251101) 1 NC_009707.1 hypothetical protein 1251101 5388606 JJD26997_1412 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398449.1 1250784 R 360109 CDS YP_001398450.1 153951602 5389077 complement(1251098..1252924) 1 NC_009707.1 molecular chaperone; heat shock protein 90 1252924 htpG 5389077 htpG Campylobacter jejuni subsp. doylei 269.97 heat shock protein 90 YP_001398450.1 1251098 R 360109 CDS YP_001398451.1 153952084 5389867 complement(1254030..1255139) 1 NC_009707.1 hypothetical protein 1255139 5389867 JJD26997_1416 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398451.1 1254030 R 360109 CDS YP_001398452.1 153951282 5389999 complement(1255223..1255870) 1 NC_009707.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 1255870 purQ 5389999 purQ Campylobacter jejuni subsp. doylei 269.97 phosphoribosylformylglycinamidine synthase I YP_001398452.1 1255223 R 360109 CDS YP_001398453.1 153952634 5390527 complement(1255872..1256117) 1 NC_009707.1 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, purS protein 1256117 purS 5390527 purS Campylobacter jejuni subsp. doylei 269.97 phosphoribosylformylglycinamidine synthase, purS protein YP_001398453.1 1255872 R 360109 CDS YP_001398454.1 153952388 5388717 complement(1256126..1256836) 1 NC_009707.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1256836 purC 5388717 purC Campylobacter jejuni subsp. doylei 269.97 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001398454.1 1256126 R 360109 CDS YP_001398455.1 153951829 5389633 complement(1256838..1258172) 1 NC_009707.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 1258172 ctpA 5389633 ctpA Campylobacter jejuni subsp. doylei 269.97 carboxyl-terminal protease YP_001398455.1 1256838 R 360109 CDS YP_001398456.1 153951100 5389548 1258291..1258581 1 NC_009707.1 identified by match to protein family HMM PF02583; hypothetical protein 1258581 5389548 JJD26997_1421 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398456.1 1258291 D 360109 CDS YP_001398457.1 153952470 5390076 1258693..1261272 1 NC_009707.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; ATP-dependent chaperone protein ClpB 1261272 clpB 5390076 clpB Campylobacter jejuni subsp. doylei 269.97 ATP-dependent chaperone protein ClpB YP_001398457.1 1258693 D 360109 CDS YP_001398458.1 153952147 5389226 1263150..1263443 1 NC_009707.1 hypothetical protein 1263443 5389226 JJD26997_1424 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398458.1 1263150 D 360109 CDS YP_001398459.1 153951125 5389520 1263445..1264176 1 NC_009707.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; NAD dependent epimerase/dehydratase family protein 1264176 5389520 JJD26997_1425 Campylobacter jejuni subsp. doylei 269.97 NAD dependent epimerase/dehydratase family protein YP_001398459.1 1263445 D 360109 CDS YP_001398460.1 153951487 5390382 1264169..1265518 1 NC_009707.1 identified by match to protein family HMM PF00501; AMP-dependent synthetase and ligase 1265518 5390382 JJD26997_1426 Campylobacter jejuni subsp. doylei 269.97 AMP-dependent synthetase and ligase YP_001398460.1 1264169 D 360109 CDS YP_001398461.1 153952250 5389474 complement(1265531..1267462) 1 NC_009707.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A 1267462 5389474 JJD26997_1427 Campylobacter jejuni subsp. doylei 269.97 penicillin-binding protein 1A YP_001398461.1 1265531 R 360109 CDS YP_001398462.1 153951030 5388786 complement(1267459..1268010) 1 NC_009707.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1268010 5388786 JJD26997_1428 Campylobacter jejuni subsp. doylei 269.97 Maf-like protein YP_001398462.1 1267459 R 360109 CDS YP_001398463.1 153951507 5388938 complement(1268010..1270538) 1 NC_009707.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1270538 alaS 5388938 alaS Campylobacter jejuni subsp. doylei 269.97 alanyl-tRNA synthetase YP_001398463.1 1268010 R 360109 CDS YP_001398464.1 153952295 5388816 1270653..1271726 1 NC_009707.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01053; DegT/DnrJ/EryC1/StrS aminotransferase family protein 1271726 5388816 JJD26997_1430 Campylobacter jejuni subsp. doylei 269.97 DegT/DnrJ/EryC1/StrS aminotransferase family protein YP_001398464.1 1270653 D 360109 CDS YP_001398465.1 153951743 5388989 1271731..1272597 1 NC_009707.1 identified by match to protein family HMM PF01408; Gfo/Idh/MocA family oxidoreductase 1272597 5388989 JJD26997_1431 Campylobacter jejuni subsp. doylei 269.97 Gfo/Idh/MocA family oxidoreductase YP_001398465.1 1271731 D 360109 CDS YP_001398466.1 153951990 5389075 1272594..1273505 1 NC_009707.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1273505 hemH 5389075 hemH Campylobacter jejuni subsp. doylei 269.97 ferrochelatase YP_001398466.1 1272594 D 360109 CDS YP_001398467.1 153952565 5390562 complement(1273498..1273749) 1 NC_009707.1 ammonium transporter 1273749 5390562 JJD26997_1432 Campylobacter jejuni subsp. doylei 269.97 ammonium transporter YP_001398467.1 1273498 R 360109 CDS YP_001398468.1 153951307 5390209 complement(1273907..1274905) 1 NC_009707.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 1274905 ybbB 5390209 ybbB Campylobacter jejuni subsp. doylei 269.97 tRNA 2-selenouridine synthase YP_001398468.1 1273907 R 360109 CDS YP_001398469.1 153952024 5389255 complement(1274895..1275380) 1 NC_009707.1 identified by match to protein family HMM PF01230; Hit family protein 1275380 5389255 JJD26997_1435 Campylobacter jejuni subsp. doylei 269.97 Hit family protein YP_001398469.1 1274895 R 360109 CDS YP_001398470.1 153951488 5389426 complement(1275390..1276166) 1 NC_009707.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 1276166 trpC 5389426 trpC Campylobacter jejuni subsp. doylei 269.97 indole-3-glycerol-phosphate synthase YP_001398470.1 1275390 R 360109 CDS YP_001398471.1 153952338 5389475 complement(1276153..1277427) 1 NC_009707.1 putative lipoprotein 1277427 5389475 JJD26997_1437 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001398471.1 1276153 R 360109 CDS YP_001398472.1 153951739 5390123 complement(1277412..1277786) 1 NC_009707.1 identified by match to protein family HMM PF03692; hypothetical protein 1277786 5390123 JJD26997_1438 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398472.1 1277412 R 360109 CDS YP_001398473.1 153951820 5388714 complement(1277776..1278477) 1 NC_009707.1 identified by match to protein family HMM PF05175; hypothetical protein 1278477 5388714 JJD26997_1439 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398473.1 1277776 R 360109 CDS YP_001398474.1 153951332 5389781 complement(1278483..1278632) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1278632 5389781 JJD26997_1440 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398474.1 1278483 R 360109 CDS YP_001398475.1 153952626 5390344 complement(1278755..1280830) 1 NC_009707.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1280830 fusA 5390344 fusA Campylobacter jejuni subsp. doylei 269.97 elongation factor G YP_001398475.1 1278755 R 360109 CDS YP_001398476.1 153951518 5388665 complement(1280843..1281313) 1 NC_009707.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1281313 rpsG 5388665 rpsG Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S7 YP_001398476.1 1280843 R 360109 CDS YP_001398477.1 153952294 5389384 complement(1281383..1281769) 1 NC_009707.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1281769 rpsL 5389384 rpsL Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S12 YP_001398477.1 1281383 R 360109 CDS YP_001398478.1 153951525 5388621 complement(1282097..1283536) 1 NC_009707.1 NAD-linked; aldehyde dehydrogenase A 1283536 aldA 5388621 aldA Campylobacter jejuni subsp. doylei 269.97 aldehyde dehydrogenase A YP_001398478.1 1282097 R 360109 CDS YP_001398479.1 153952043 5388907 complement(1283550..1283867) 1 NC_009707.1 identified by match to protein family HMM PF05336; hypothetical protein 1283867 5388907 JJD26997_1446 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398479.1 1283550 R 360109 CDS YP_001398480.1 153951344 5390446 complement(1283868..1284638) 1 NC_009707.1 identified by match to protein family HMM PF04909; hypothetical protein 1284638 5390446 JJD26997_1447 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398480.1 1283868 R 360109 CDS YP_001398481.1 153951844 5390438 complement(1284622..1285878) 1 NC_009707.1 identified by match to protein family HMM PF07690; L-fucose permease 1285878 fucP 5390438 fucP Campylobacter jejuni subsp. doylei 269.97 L-fucose permease YP_001398481.1 1284622 R 360109 CDS YP_001398482.1 153951106 5389906 complement(1285889..1286677) 1 NC_009707.1 identified by match to protein family HMM PF00106; short chain dehydrogenase 1286677 5389906 JJD26997_1449 Campylobacter jejuni subsp. doylei 269.97 short chain dehydrogenase YP_001398482.1 1285889 R 360109 CDS YP_001398483.1 153952668 5389696 complement(1287609..1288775) 1 NC_009707.1 identified by match to protein family HMM PF04295; altronate hydrolase 1288775 uxaA 5389696 uxaA Campylobacter jejuni subsp. doylei 269.97 altronate hydrolase YP_001398483.1 1287609 R 360109 CDS YP_001398484.1 153952427 5390479 complement(1289038..1289946) 1 NC_009707.1 identified by match to protein family HMM PF00701; dihydrodipicolinate synthase 1289946 5390479 JJD26997_1453 Campylobacter jejuni subsp. doylei 269.97 dihydrodipicolinate synthase YP_001398484.1 1289038 R 360109 CDS YP_001398485.1 153951454 5389823 1290176..1290937 1 NC_009707.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339; IclR family transcriptional regulator 1290937 5389823 JJD26997_1454 Campylobacter jejuni subsp. doylei 269.97 IclR family transcriptional regulator YP_001398485.1 1290176 D 360109 CDS YP_001398486.1 153951978 5389358 complement(1299759..1300136) 1 NC_009707.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1300136 rplL 5389358 rplL Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L7/L12 YP_001398486.1 1299759 R 360109 CDS YP_001398487.1 153951193 5390484 complement(1300158..1300637) 1 NC_009707.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1300637 rplJ 5390484 rplJ Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L10 YP_001398487.1 1300158 R 360109 CDS YP_001398488.1 153952002 5389277 complement(1300789..1301490) 1 NC_009707.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1301490 rplA 5389277 rplA Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L1 YP_001398488.1 1300789 R 360109 CDS YP_001398489.1 153951352 5388699 complement(1301545..1301970) 1 NC_009707.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1301970 rplK 5388699 rplK Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L11 YP_001398489.1 1301545 R 360109 CDS YP_001398490.1 153951948 5389417 complement(1301996..1302529) 1 NC_009707.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 1302529 nusG 5389417 nusG Campylobacter jejuni subsp. doylei 269.97 transcription antitermination protein NusG YP_001398490.1 1301996 R 360109 CDS YP_001398491.1 153951577 5390386 complement(1302539..1302718) 1 NC_009707.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 1302718 secE 5390386 secE Campylobacter jejuni subsp. doylei 269.97 preprotein translocase subunit SecE YP_001398491.1 1302539 R 360109 CDS YP_001398492.1 153952140 5390409 complement(1302826..1302984) 1 NC_009707.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1302984 rpmG 5390409 rpmG Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L33 YP_001398492.1 1302826 R 360109 CDS YP_001398493.1 153952550 5390220 complement(1303037..1304236) 1 NC_009707.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1304236 tuf 5390220 tuf Campylobacter jejuni subsp. doylei 269.97 elongation factor Tu YP_001398493.1 1303037 R 360109 CDS YP_001398494.1 153951756 5389366 complement(1304894..1305631) 1 NC_009707.1 identified by match to protein family HMM PF00005; amino acid ABC transporter, ATP-binding protein 1305631 5389366 JJD26997_1470 Campylobacter jejuni subsp. doylei 269.97 amino acid ABC transporter, ATP-binding protein YP_001398494.1 1304894 R 360109 CDS YP_001398495.1 153951032 5390205 complement(1305633..1306289) 1 NC_009707.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 1306289 5390205 JJD26997_1471 Campylobacter jejuni subsp. doylei 269.97 His/Glu/Gln/Arg/opine ABC transporter permease YP_001398495.1 1305633 R 360109 CDS YP_001398496.1 153952019 5390133 complement(1306282..1306983) 1 NC_009707.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 1306983 5390133 JJD26997_1472 Campylobacter jejuni subsp. doylei 269.97 His/Glu/Gln/Arg/opine ABC transporter permease YP_001398496.1 1306282 R 360109 CDS YP_001398497.1 153952239 5390429 complement(1306999..1307595) 1 NC_009707.1 identified by match to protein family HMM PF00027; putative transcriptional regulator 1307595 5390429 JJD26997_1473 Campylobacter jejuni subsp. doylei 269.97 putative transcriptional regulator YP_001398497.1 1306999 R 360109 CDS YP_001398498.1 153952285 5389034 1307688..1308071 1 NC_009707.1 hypothetical protein 1308071 5389034 JJD26997_1475 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398498.1 1307688 D 360109 CDS YP_001398499.1 153950967 5389339 complement(1308068..1309891) 1 NC_009707.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1309891 recG 5389339 recG Campylobacter jejuni subsp. doylei 269.97 ATP-dependent DNA helicase RecG YP_001398499.1 1308068 R 360109 CDS YP_001398500.1 153951499 5388957 complement(1309881..1311101) 1 NC_009707.1 identified by match to protein family HMM PF05193; putative peptidase 1311101 5388957 JJD26997_1476 Campylobacter jejuni subsp. doylei 269.97 putative peptidase YP_001398500.1 1309881 R 360109 CDS YP_001398501.1 153952534 5390178 complement(1311101..1312147) 1 NC_009707.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; hypothetical protein 1312147 5390178 JJD26997_1477 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398501.1 1311101 R 360109 CDS YP_001398502.1 153951780 5390538 1312221..1313408 1 NC_009707.1 identified by match to protein family HMM PF04332; match to protein family HMM PF07690; putative transporter 1313408 5390538 JJD26997_1478 Campylobacter jejuni subsp. doylei 269.97 putative transporter YP_001398502.1 1312221 D 360109 CDS YP_001398503.1 153951003 5389441 complement(1313424..1314512) 1 NC_009707.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1314512 nusA 5389441 nusA Campylobacter jejuni subsp. doylei 269.97 transcription elongation factor NusA YP_001398503.1 1313424 R 360109 CDS YP_001398504.1 153951837 5389995 1314640..1314882 1 NC_009707.1 hypothetical protein 1314882 5389995 JJD26997_1480 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398504.1 1314640 D 360109 CDS YP_001398505.1 153951503 5389895 1314879..1316180 1 NC_009707.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1316180 miaB 5389895 miaB Campylobacter jejuni subsp. doylei 269.97 (dimethylallyl)adenosine tRNA methylthiotransferase YP_001398505.1 1314879 D 360109 CDS YP_001398506.1 153952130 5389266 1316143..1316793 1 NC_009707.1 identified by match to protein family HMM PF04028; hypothetical protein 1316793 5389266 JJD26997_1482 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398506.1 1316143 D 360109 CDS YP_001398507.1 153951951 5389056 1316795..1317754 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1317754 5389056 JJD26997_1483 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398507.1 1316795 D 360109 CDS YP_001398508.1 153952503 5389714 1317751..1318278 1 NC_009707.1 hypothetical protein 1318278 5389714 JJD26997_1484 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398508.1 1317751 D 360109 CDS YP_001398509.1 153952105 5388963 1318268..1318786 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1318786 5388963 JJD26997_1486 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398509.1 1318268 D 360109 CDS YP_001398510.1 153952434 5390534 complement(1318778..1320070) 1 NC_009707.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 1320070 thiC 5390534 thiC Campylobacter jejuni subsp. doylei 269.97 thiamine biosynthesis protein ThiC YP_001398510.1 1318778 R 360109 CDS YP_001398511.1 153950960 5389532 complement(1321011..1321658) 1 NC_009707.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1321658 rpe 5389532 rpe Campylobacter jejuni subsp. doylei 269.97 ribulose-phosphate 3-epimerase YP_001398511.1 1321011 R 360109 CDS YP_001398512.1 153951942 5389905 1321800..1321994 1 NC_009707.1 required for 70S ribosome assembly; 50S ribosomal protein L28 1321994 rpmB 5389905 rpmB Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L28 YP_001398512.1 1321800 D 360109 CDS YP_001398513.1 153951671 5389303 1322179..1322394 1 NC_009707.1 identified by match to protein family HMM PF04325; hypothetical protein 1322394 5389303 JJD26997_1490 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398513.1 1322179 D 360109 CDS YP_001398514.1 153952095 5389085 complement(1323529..1324125) 1 NC_009707.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; NUDIX domain-containing protein 1324125 5389085 JJD26997_1492 Campylobacter jejuni subsp. doylei 269.97 NUDIX domain-containing protein YP_001398514.1 1323529 R 360109 CDS YP_001398515.1 153951362 5388904 complement(1324206..1326299) 1 NC_009707.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; putative TonB-dependent receptor 1326299 5388904 JJD26997_1493 Campylobacter jejuni subsp. doylei 269.97 putative TonB-dependent receptor YP_001398515.1 1324206 R 360109 CDS YP_001398516.1 153952299 5389044 complement(1326434..1327372) 1 NC_009707.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1327372 accA 5389044 accA Campylobacter jejuni subsp. doylei 269.97 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_001398516.1 1326434 R 360109 CDS YP_001398517.1 153952256 5389381 complement(1327374..1328588) 1 NC_009707.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1328588 fabF 5389381 fabF Campylobacter jejuni subsp. doylei 269.97 3-oxoacyl-(acyl carrier protein) synthase II YP_001398517.1 1327374 R 360109 CDS YP_001398518.1 153951783 5388698 complement(1328614..1328847) 1 NC_009707.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1328847 acpP 5388698 acpP Campylobacter jejuni subsp. doylei 269.97 acyl carrier protein YP_001398518.1 1328614 R 360109 CDS YP_001398519.1 153952481 5390188 1328957..1329625 1 NC_009707.1 identified by match to protein family HMM PF03070; TenA/Thi-4 family protein 1329625 5390188 JJD26997_1497 Campylobacter jejuni subsp. doylei 269.97 TenA/Thi-4 family protein YP_001398519.1 1328957 D 360109 CDS YP_001398520.1 153952641 5388807 complement(1331157..1331276) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1331276 5388807 JJD26997_1503 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398520.1 1331157 R 360109 CDS YP_001398521.1 153951877 5389156 complement(1333585..1333992) 1 NC_009707.1 identified by match to protein family HMM PF01243; hypothetical protein 1333992 5389156 JJD26997_1508 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398521.1 1333585 R 360109 CDS YP_001398522.1 153952669 5390472 complement(1334002..1334745) 1 NC_009707.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1334745 fabG 5390472 fabG Campylobacter jejuni subsp. doylei 269.97 3-ketoacyl-ACP reductase YP_001398522.1 1334002 R 360109 CDS YP_001398523.1 153951697 5389771 complement(1334817..1336295) 1 NC_009707.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1336295 pgm 5389771 pgm Campylobacter jejuni subsp. doylei 269.97 phosphoglyceromutase YP_001398523.1 1334817 R 360109 CDS YP_001398524.1 153951175 5388634 1336375..1337436 1 NC_009707.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1337436 mraY 5388634 mraY Campylobacter jejuni subsp. doylei 269.97 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001398524.1 1336375 D 360109 CDS YP_001398525.1 153952454 5390405 1337436..1338644 1 NC_009707.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1338644 murD 5390405 murD Campylobacter jejuni subsp. doylei 269.97 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001398525.1 1337436 D 360109 CDS YP_001398526.1 153951425 5389882 complement(1338742..1339815) 1 NC_009707.1 hypothetical protein 1339815 5389882 JJD26997_1513 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398526.1 1338742 R 360109 CDS YP_001398527.1 153952191 5389691 complement(1339815..1341053) 1 NC_009707.1 identified by match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02655; hypothetical protein 1341053 5389691 JJD26997_1514 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398527.1 1339815 R 360109 CDS YP_001398528.1 153952541 5389114 complement(1341057..1341659) 1 NC_009707.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase domain-containing protein 1341659 5389114 JJD26997_1515 Campylobacter jejuni subsp. doylei 269.97 methyltransferase domain-containing protein YP_001398528.1 1341057 R 360109 CDS YP_001398529.1 153951217 5389174 complement(1341643..1342140) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1342140 5389174 JJD26997_1516 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398529.1 1341643 R 360109 CDS YP_001398530.1 153951870 5389311 complement(1342133..1343314) 1 NC_009707.1 hypothetical protein 1343314 5389311 JJD26997_1517 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398530.1 1342133 R 360109 CDS YP_001398531.1 153952010 5389030 complement(1343533..1343664) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1343664 5389030 JJD26997_1518 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398531.1 1343533 R 360109 CDS YP_001398532.1 153951022 5390307 complement(1347962..1348078) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1348078 5390307 JJD26997_1521 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398532.1 1347962 R 360109 CDS YP_001398533.1 153951387 5389379 complement(1350631..1351368) 1 NC_009707.1 hypothetical protein 1351368 5389379 JJD26997_1525 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398533.1 1350631 R 360109 CDS YP_001398534.1 153951255 5388873 complement(1351361..1352587) 1 NC_009707.1 hypothetical protein 1352587 5388873 JJD26997_1526 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398534.1 1351361 R 360109 CDS YP_001398535.1 153952063 5390026 1352707..1353291 1 NC_009707.1 identified by match to protein family HMM PF01205; hypothetical protein 1353291 5390026 JJD26997_1527 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398535.1 1352707 D 360109 CDS YP_001398536.1 153951336 5388800 complement(1353785..1354117) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1354117 5388800 JJD26997_1528 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398536.1 1353785 R 360109 CDS YP_001398537.1 153951814 5389387 complement(1354110..1355687) 1 NC_009707.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1355687 5389387 JJD26997_1529 Campylobacter jejuni subsp. doylei 269.97 ABC transporter ATP-binding protein YP_001398537.1 1354110 R 360109 CDS YP_001398538.1 153951553 5389333 complement(1355810..1356259) 1 NC_009707.1 putative lipoprotein 1356259 5389333 JJD26997_1530 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001398538.1 1355810 R 360109 CDS YP_001398539.1 153952303 5390323 complement(1356259..1356519) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1356519 5390323 JJD26997_1531 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398539.1 1356259 R 360109 CDS YP_001398540.1 153951740 5389737 complement(1357353..1357472) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1357472 5389737 JJD26997_1533 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398540.1 1357353 R 360109 CDS YP_001398541.1 153952015 5388715 1357445..1358401 1 NC_009707.1 hypothetical protein 1358401 5388715 JJD26997_1535 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398541.1 1357445 D 360109 CDS YP_001398542.1 153950999 5389070 complement(1358406..1358978) 1 NC_009707.1 identified by match to protein family HMM PF04264; hypothetical protein 1358978 5389070 JJD26997_1536 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398542.1 1358406 R 360109 CDS YP_001398543.1 153952114 5390588 complement(1359042..1359413) 1 NC_009707.1 identified by match to protein family HMM PF01230; HIT family protein 1359413 5390588 JJD26997_1537 Campylobacter jejuni subsp. doylei 269.97 HIT family protein YP_001398543.1 1359042 R 360109 CDS YP_001398544.1 153951377 5389241 1359519..1360223 1 NC_009707.1 hypothetical protein 1360223 5389241 JJD26997_1538 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398544.1 1359519 D 360109 CDS YP_001398545.1 153951561 5388988 complement(1362363..1363067) 1 NC_009707.1 identified by match to protein family HMM PF07719; match to protein family HMM PF08238; hypothetical protein 1363067 5388988 JJD26997_1544 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398545.1 1362363 R 360109 CDS YP_001398546.1 153952488 5388927 complement(1363067..1364776) 1 NC_009707.1 identified by match to protein family HMM PF00350; match to protein family HMM PF01926; GTP-binding protein 1364776 5388927 JJD26997_1545 Campylobacter jejuni subsp. doylei 269.97 GTP-binding protein YP_001398546.1 1363067 R 360109 CDS YP_001398547.1 153951747 5389859 complement(1364886..1367072) 1 NC_009707.1 identified by match to protein family HMM PF00350; match to protein family HMM PF01926; GTP-binding protein 1367072 5389859 JJD26997_1546 Campylobacter jejuni subsp. doylei 269.97 GTP-binding protein YP_001398547.1 1364886 R 360109 CDS YP_001398548.1 153952257 5389635 complement(1367100..1367825) 1 NC_009707.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 1367825 frdB 5389635 frdB Campylobacter jejuni subsp. doylei 269.97 fumarate reductase iron-sulfur subunit YP_001398548.1 1367100 R 360109 CDS YP_001398549.1 153951501 5388613 complement(1367818..1369809) 1 NC_009707.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 1369809 frdA 5388613 frdA Campylobacter jejuni subsp. doylei 269.97 fumarate reductase flavoprotein subunit YP_001398549.1 1367818 R 360109 CDS YP_001398550.1 153952486 5388723 complement(1369793..1370575) 1 NC_009707.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 1370575 frdC 5388723 frdC Campylobacter jejuni subsp. doylei 269.97 fumarate reductase cytochrome b-556 subunit YP_001398550.1 1369793 R 360109 CDS YP_001398551.1 153952183 5390358 complement(1370644..1371459) 1 NC_009707.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1371459 lgt 5390358 lgt Campylobacter jejuni subsp. doylei 269.97 prolipoprotein diacylglyceryl transferase YP_001398551.1 1370644 R 360109 CDS YP_001398552.1 153951363 5388742 1371548..1372447 1 NC_009707.1 putative lipoprotein 1372447 5388742 JJD26997_1551 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001398552.1 1371548 D 360109 CDS YP_001398553.1 153952221 5389045 complement(1372522..1373310) 1 NC_009707.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 1373310 aroE 5389045 aroE Campylobacter jejuni subsp. doylei 269.97 shikimate 5-dehydrogenase YP_001398553.1 1372522 R 360109 CDS YP_001398554.1 153951176 5388818 complement(1373307..1374143) 1 NC_009707.1 identified by match to protein family HMM PF05036; hypothetical protein 1374143 5388818 JJD26997_1553 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398554.1 1373307 R 360109 CDS YP_001398555.1 153951953 5390406 complement(1374157..1374702) 1 NC_009707.1 identified by match to protein family HMM PF08966; hypothetical protein 1374702 5390406 JJD26997_1554 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398555.1 1374157 R 360109 CDS YP_001398556.1 153950954 5389716 complement(1374699..1375943) 1 NC_009707.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1375943 glyA 5389716 glyA Campylobacter jejuni subsp. doylei 269.97 serine hydroxymethyltransferase YP_001398556.1 1374699 R 360109 CDS YP_001398557.1 153951744 5389363 complement(1375940..1377445) 1 NC_009707.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1377445 lysS 5389363 lysS Campylobacter jejuni subsp. doylei 269.97 lysyl-tRNA synthetase YP_001398557.1 1375940 R 360109 CDS YP_001398558.1 153952347 5389433 complement(1377446..1377919) 1 NC_009707.1 identified by match to protein family HMM PF01475; ferric uptake regulation protein 1377919 fur 5389433 fur Campylobacter jejuni subsp. doylei 269.97 ferric uptake regulation protein YP_001398558.1 1377446 R 360109 CDS YP_001398559.1 153951399 5389003 complement(1377913..1378485) 1 NC_009707.1 identified by match to protein family HMM PF02674; cvpA family protein 1378485 5389003 JJD26997_1558 Campylobacter jejuni subsp. doylei 269.97 cvpA family protein YP_001398559.1 1377913 R 360109 CDS YP_001398560.1 153952245 5389727 complement(1378551..1378835) 1 NC_009707.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1378835 gatC 5389727 gatC Campylobacter jejuni subsp. doylei 269.97 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_001398560.1 1378551 R 360109 CDS YP_001398561.1 153951242 5390054 1378978..1379556 1 NC_009707.1 hypothetical protein 1379556 5390054 JJD26997_1560 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398561.1 1378978 D 360109 CDS YP_001398562.1 153952197 5389001 1379553..1380551 1 NC_009707.1 putative lipoprotein 1380551 5389001 JJD26997_1561 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001398562.1 1379553 D 360109 CDS YP_001398563.1 153952336 5389544 1380824..1381453 1 NC_009707.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 1381453 5389544 JJD26997_1564 Campylobacter jejuni subsp. doylei 269.97 pantothenate kinase YP_001398563.1 1380824 D 360109 CDS YP_001398564.1 153951539 5390121 1381572..1382918 1 NC_009707.1 identified by match to protein family HMM PF01266; match to protein family HMM PF06039; putative malate:quinone oxidoreductase 1382918 5390121 JJD26997_1565 Campylobacter jejuni subsp. doylei 269.97 putative malate:quinone oxidoreductase YP_001398564.1 1381572 D 360109 CDS YP_001398565.1 153952505 5388704 1382967..1384409 1 NC_009707.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 1384409 pyk 5388704 pyk Campylobacter jejuni subsp. doylei 269.97 pyruvate kinase YP_001398565.1 1382967 D 360109 CDS YP_001398566.1 153950987 5389925 1384507..1385142 1 NC_009707.1 hypothetical protein 1385142 5389925 JJD26997_1567 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398566.1 1384507 D 360109 CDS YP_001398567.1 153951848 5389557 complement(1385173..1387635) 1 NC_009707.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1387635 5389557 JJD26997_1568 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398567.1 1385173 R 360109 CDS YP_001398568.1 153951229 5388947 complement(1387645..1388880) 1 NC_009707.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1388880 serS 5388947 serS Campylobacter jejuni subsp. doylei 269.97 seryl-tRNA synthetase YP_001398568.1 1387645 R 360109 CDS YP_001398569.1 153951987 5389191 complement(1388891..1389850) 1 NC_009707.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1389850 trpS 5389191 trpS Campylobacter jejuni subsp. doylei 269.97 tryptophanyl-tRNA synthetase YP_001398569.1 1388891 R 360109 CDS YP_001398570.1 153951281 5389020 complement(1389847..1390344) 1 NC_009707.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 1390344 aroK 5389020 aroK Campylobacter jejuni subsp. doylei 269.97 shikimate kinase YP_001398570.1 1389847 R 360109 CDS YP_001398571.1 153951852 5390526 complement(1390331..1391713) 1 NC_009707.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1391713 engA 5390526 engA Campylobacter jejuni subsp. doylei 269.97 GTP-binding protein EngA YP_001398571.1 1390331 R 360109 CDS YP_001398572.1 153951705 5389723 1391814..1392746 1 NC_009707.1 identified by match to protein family HMM PF00892; integral membrane protein 1392746 5389723 JJD26997_1573 Campylobacter jejuni subsp. doylei 269.97 integral membrane protein YP_001398572.1 1391814 D 360109 CDS YP_001398573.1 153952090 5389129 1392743..1393546 1 NC_009707.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1393546 kdsA 5389129 kdsA Campylobacter jejuni subsp. doylei 269.97 2-dehydro-3-deoxyphosphooctonate aldolase YP_001398573.1 1392743 D 360109 CDS YP_001398574.1 153951681 5388791 1393556..1394020 1 NC_009707.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1394020 ribH 5388791 ribH Campylobacter jejuni subsp. doylei 269.97 6,7-dimethyl-8-ribityllumazine synthase YP_001398574.1 1393556 D 360109 CDS YP_001398575.1 153952373 5388671 1394020..1394418 1 NC_009707.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1394418 nusB 5388671 nusB Campylobacter jejuni subsp. doylei 269.97 transcription antitermination protein NusB YP_001398575.1 1394020 D 360109 CDS YP_001398576.1 153951680 5390275 1394415..1395095 1 NC_009707.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1395095 pyrF 5390275 pyrF Campylobacter jejuni subsp. doylei 269.97 orotidine 5'-phosphate decarboxylase YP_001398576.1 1394415 D 360109 CDS YP_001398577.1 153951286 5388670 1395150..1396043 1 NC_009707.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 1396043 5388670 JJD26997_1578 Campylobacter jejuni subsp. doylei 269.97 putative sulfite oxidase subunit YedY YP_001398577.1 1395150 D 360109 CDS YP_001398578.1 153951056 5389610 1396043..1396615 1 NC_009707.1 identified by match to protein family HMM PF01794; hypothetical protein 1396615 5389610 JJD26997_1580 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398578.1 1396043 D 360109 CDS YP_001398579.1 153951480 5390455 complement(1396580..1398292) 1 NC_009707.1 identified by match to protein family HMM PF00004; AAA ATPase 1398292 5390455 JJD26997_1579 Campylobacter jejuni subsp. doylei 269.97 AAA ATPase YP_001398579.1 1396580 R 360109 CDS YP_001398580.1 153951753 5389743 complement(1398292..1399116) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1399116 5389743 JJD26997_1581 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398580.1 1398292 R 360109 CDS YP_001398581.1 153951322 5390519 complement(1399127..1399603) 1 NC_009707.1 putative lipoprotein 1399603 5390519 JJD26997_1582 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001398581.1 1399127 R 360109 CDS YP_001398582.1 153952053 5389695 complement(1399612..1400103) 1 NC_009707.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 1400103 5389695 JJD26997_1583 Campylobacter jejuni subsp. doylei 269.97 putative nucleotide-binding protein YP_001398582.1 1399612 R 360109 CDS YP_001398583.1 153951298 5390334 complement(1400093..1401028) 1 NC_009707.1 Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 1401028 5390334 JJD26997_1584 Campylobacter jejuni subsp. doylei 269.97 2-hydroxyacid dehydrogenase YP_001398583.1 1400093 R 360109 CDS YP_001398584.1 153952305 5390569 complement(1401032..1402201) 1 NC_009707.1 identified by match to protein family HMM PF03738; glutathionylspermidine synthase 1402201 5390569 JJD26997_1585 Campylobacter jejuni subsp. doylei 269.97 glutathionylspermidine synthase YP_001398584.1 1401032 R 360109 CDS YP_001398585.1 153951053 5390468 complement(1402211..1402816) 1 NC_009707.1 hypothetical protein 1402816 5390468 JJD26997_1586 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398585.1 1402211 R 360109 CDS YP_001398586.1 153951576 5389035 complement(1402932..1403144) 1 NC_009707.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1403144 rpsU 5389035 rpsU Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S21 YP_001398586.1 1402932 R 360109 CDS YP_001398587.1 153951520 5389101 1403302..1404678 1 NC_009707.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02745; iron-sulfur cluster-binding domain-containing protein 1404678 5389101 JJD26997_1588 Campylobacter jejuni subsp. doylei 269.97 iron-sulfur cluster-binding domain-containing protein YP_001398587.1 1403302 D 360109 CDS YP_001398588.1 153952460 5389735 1404665..1405297 1 NC_009707.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1405297 5389735 JJD26997_1589 Campylobacter jejuni subsp. doylei 269.97 TetR family transcriptional regulator YP_001398588.1 1404665 D 360109 CDS YP_001398589.1 153951714 5389297 1405392..1406495 1 NC_009707.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND efflux system, membrane fusion protein CmeA 1406495 cmeA 5389297 cmeA Campylobacter jejuni subsp. doylei 269.97 RND efflux system, membrane fusion protein CmeA YP_001398589.1 1405392 D 360109 CDS YP_001398590.1 153950964 5389007 1406495..1409617 1 NC_009707.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; RND efflux system, inner membrane transporter CmeB 1409617 cmeB 5389007 cmeB Campylobacter jejuni subsp. doylei 269.97 RND efflux system, inner membrane transporter CmeB YP_001398590.1 1406495 D 360109 CDS YP_001398591.1 153951933 5388960 complement(1411110..1411361) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1411361 5388960 JJD26997_1593 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398591.1 1411110 R 360109 CDS YP_001398592.1 153951238 5388747 complement(1412832..1413284) 1 NC_009707.1 identified by match to protein family HMM PF03653; match to protein family HMM TIGR00701; hypothetical protein 1413284 5388747 JJD26997_1594 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398592.1 1412832 R 360109 CDS YP_001398593.1 153951265 5389512 complement(1413268..1413738) 1 NC_009707.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1413738 lspA 5389512 lspA Campylobacter jejuni subsp. doylei 269.97 lipoprotein signal peptidase YP_001398593.1 1413268 R 360109 CDS YP_001398594.1 153952262 5389453 complement(1413731..1415068) 1 NC_009707.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1415068 glmM 5389453 glmM Campylobacter jejuni subsp. doylei 269.97 phosphoglucosamine mutase YP_001398594.1 1413731 R 360109 CDS YP_001398595.1 153951796 5390130 1416360..1416968 1 NC_009707.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 1416968 5390130 JJD26997_1601 Campylobacter jejuni subsp. doylei 269.97 putative glycerol-3-phosphate acyltransferase PlsY YP_001398595.1 1416360 D 360109 CDS YP_001398596.1 153951642 5389351 1416953..1417270 1 NC_009707.1 FolB domain-containing protein 1417270 5389351 JJD26997_1602 Campylobacter jejuni subsp. doylei 269.97 FolB domain-containing protein YP_001398596.1 1416953 D 360109 CDS YP_001398597.1 153952622 5390347 1417348..1418019 1 NC_009707.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1418019 5390347 JJD26997_1603 Campylobacter jejuni subsp. doylei 269.97 DNA-binding response regulator YP_001398597.1 1417348 D 360109 CDS YP_001398598.1 153951285 5390414 1418133..1418378 1 NC_009707.1 identified by match to protein family HMM PF00037; ferredoxin, 4Fe-4S 1418378 5390414 JJD26997_1604 Campylobacter jejuni subsp. doylei 269.97 ferredoxin, 4Fe-4S YP_001398598.1 1418133 D 360109 CDS YP_001398599.1 153952042 5389870 1418378..1419838 1 NC_009707.1 identified by match to protein family HMM PF02541; Ppx/GppA family phosphatase 1419838 5389870 JJD26997_1606 Campylobacter jejuni subsp. doylei 269.97 Ppx/GppA family phosphatase YP_001398599.1 1418378 D 360109 CDS YP_001398600.1 153952292 5389829 complement(1419822..1420601) 1 NC_009707.1 hypothetical protein 1420601 5389829 JJD26997_1605 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398600.1 1419822 R 360109 CDS YP_001398601.1 153951316 5388619 complement(1420608..1420916) 1 NC_009707.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1420916 fliN 5388619 fliN Campylobacter jejuni subsp. doylei 269.97 flagellar motor switch protein YP_001398601.1 1420608 R 360109 CDS YP_001398602.1 153951121 5389402 complement(1421407..1422156) 1 NC_009707.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1422156 trpA 5389402 trpA Campylobacter jejuni subsp. doylei 269.97 tryptophan synthase subunit alpha YP_001398602.1 1421407 R 360109 CDS YP_001398603.1 153952088 5389324 complement(1422149..1423327) 1 NC_009707.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1423327 trpB 5389324 trpB Campylobacter jejuni subsp. doylei 269.97 tryptophan synthase subunit beta YP_001398603.1 1422149 R 360109 CDS YP_001398604.1 153952647 5388789 complement(1423324..1423923) 1 NC_009707.1 identified by match to protein family HMM PF00697; N-(5'phosphoribosyl)anthranilate isomerase 1423923 trpF 5388789 trpF Campylobacter jejuni subsp. doylei 269.97 N-(5'phosphoribosyl)anthranilate isomerase YP_001398604.1 1423324 R 360109 CDS YP_001398605.1 153951871 5389359 complement(1423910..1425511) 1 NC_009707.1 identified by match to protein family HMM PF00117; match to protein family HMM PF00591; match to protein family HMM TIGR00566; match to protein family HMM TIGR01245; anthranilate synthase component II 1425511 trpD 5389359 trpD Campylobacter jejuni subsp. doylei 269.97 anthranilate synthase component II YP_001398605.1 1423910 R 360109 CDS YP_001398606.1 153952607 5390329 complement(1425508..1426758) 1 NC_009707.1 identified by match to protein family HMM PF00425; anthranilate synthase component I 1426758 trpE 5390329 trpE Campylobacter jejuni subsp. doylei 269.97 anthranilate synthase component I YP_001398606.1 1425508 R 360109 CDS YP_001398607.1 153951594 5390212 complement(1426917..1427042) 1 NC_009707.1 hypothetical protein 1427042 5390212 JJD26997_1615 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398607.1 1426917 R 360109 CDS YP_001398608.1 153952056 5389091 1427166..1427951 1 NC_009707.1 identified by match to protein family HMM PF01925; hypothetical protein 1427951 5389091 JJD26997_1616 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398608.1 1427166 D 360109 CDS YP_001398609.1 153951046 5389271 1428024..1430849 1 NC_009707.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 1430849 uvrA 5389271 uvrA Campylobacter jejuni subsp. doylei 269.97 excinuclease ABC subunit A YP_001398609.1 1428024 D 360109 CDS YP_001398610.1 153952247 5390023 1430854..1431297 1 NC_009707.1 identified by match to protein family HMM PF09335; hypothetical protein 1431297 5390023 JJD26997_1618 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398610.1 1430854 D 360109 CDS YP_001398611.1 153951516 5389149 1433150..1435789 1 NC_009707.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 1435789 polA 5389149 polA Campylobacter jejuni subsp. doylei 269.97 DNA polymerase I YP_001398611.1 1433150 D 360109 CDS YP_001398612.1 153952523 5388764 1435805..1436581 1 NC_009707.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 1436581 5388764 JJD26997_1621 Campylobacter jejuni subsp. doylei 269.97 flagellar motor protein MotA YP_001398612.1 1435805 D 360109 CDS YP_001398613.1 153952261 5389571 1436584..1437327 1 NC_009707.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 1437327 motB 5389571 motB Campylobacter jejuni subsp. doylei 269.97 flagellar motor protein MotB YP_001398613.1 1436584 D 360109 CDS YP_001398614.1 153952141 5389282 complement(1437333..1438421) 1 NC_009707.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1438421 flhB 5389282 flhB Campylobacter jejuni subsp. doylei 269.97 flagellar biosynthesis protein FlhB YP_001398614.1 1437333 R 360109 CDS YP_001398615.1 153951156 5390221 complement(1438538..1439134) 1 NC_009707.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; anti-oxidant AhpCTSA family protein 1439134 5390221 JJD26997_1624 Campylobacter jejuni subsp. doylei 269.97 anti-oxidant AhpCTSA family protein YP_001398615.1 1438538 R 360109 CDS YP_001398616.1 153951895 5390528 1439340..1439624 1 NC_009707.1 identified by match to protein family HMM PF00037; ferredoxin, 4Fe-4S 1439624 5390528 JJD26997_1625 Campylobacter jejuni subsp. doylei 269.97 ferredoxin, 4Fe-4S YP_001398616.1 1439340 D 360109 CDS YP_001398617.1 153951886 5388953 1439738..1440151 1 NC_009707.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1440151 ndk 5388953 ndk Campylobacter jejuni subsp. doylei 269.97 nucleoside diphosphate kinase YP_001398617.1 1439738 D 360109 CDS YP_001398618.1 153951797 5389586 1440152..1440505 1 NC_009707.1 hypothetical protein 1440505 5389586 JJD26997_1627 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398618.1 1440152 D 360109 CDS YP_001398619.1 153952542 5389352 1440530..1440676 1 NC_009707.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1440676 rpmF 5389352 rpmF Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L32 YP_001398619.1 1440530 D 360109 CDS YP_001398620.1 153951484 5389175 1440682..1441668 1 NC_009707.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1441668 plsX 5389175 plsX Campylobacter jejuni subsp. doylei 269.97 putative glycerol-3-phosphate acyltransferase PlsX YP_001398620.1 1440682 D 360109 CDS YP_001398621.1 153952312 5389865 1441661..1442635 1 NC_009707.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1442635 fabH 5389865 fabH Campylobacter jejuni subsp. doylei 269.97 3-oxoacyl-ACP synthase YP_001398621.1 1441661 D 360109 CDS YP_001398622.1 153952450 5389312 1442801..1442947 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1442947 5389312 JJD26997_1633 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398622.1 1442801 D 360109 CDS YP_001398623.1 153951457 5389749 complement(1442929..1444005) 1 NC_009707.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1444005 serC 5389749 serC Campylobacter jejuni subsp. doylei 269.97 phosphoserine aminotransferase YP_001398623.1 1442929 R 360109 CDS YP_001398624.1 153951694 5388835 complement(1444015..1445178) 1 NC_009707.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1445178 xseA 5388835 xseA Campylobacter jejuni subsp. doylei 269.97 exodeoxyribonuclease VII large subunit YP_001398624.1 1444015 R 360109 CDS YP_001398625.1 153952588 5388769 complement(1445187..1445309) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1445309 5388769 JJD26997_1635 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398625.1 1445187 R 360109 CDS YP_001398626.1 153951678 5390185 1445309..1446274 1 NC_009707.1 identified by match to protein family HMM PF03401; TctC protein 1446274 5390185 JJD26997_1636 Campylobacter jejuni subsp. doylei 269.97 TctC protein YP_001398626.1 1445309 D 360109 CDS YP_001398627.1 153950940 5389718 1446281..1446718 1 NC_009707.1 TctB protein 1446718 5389718 JJD26997_1637 Campylobacter jejuni subsp. doylei 269.97 TctB protein YP_001398627.1 1446281 D 360109 CDS YP_001398628.1 153951219 5390350 1446727..1448223 1 NC_009707.1 identified by match to protein family HMM PF01970; tricarboxylic transport 1448223 5390350 JJD26997_1639 Campylobacter jejuni subsp. doylei 269.97 tricarboxylic transport YP_001398628.1 1446727 D 360109 CDS YP_001398629.1 153951947 5390157 complement(1448204..1448911) 1 NC_009707.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1448911 ubiE 5390157 ubiE Campylobacter jejuni subsp. doylei 269.97 ubiquinone/menaquinone biosynthesis methyltransferase YP_001398629.1 1448204 R 360109 CDS YP_001398630.1 153952667 5390385 complement(1448914..1450110) 1 NC_009707.1 hypothetical protein 1450110 5390385 JJD26997_1640 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398630.1 1448914 R 360109 CDS YP_001398631.1 153951652 5390271 complement(1450155..1450565) 1 NC_009707.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 1450565 5390271 JJD26997_1641 Campylobacter jejuni subsp. doylei 269.97 FUR family transcriptional regulator YP_001398631.1 1450155 R 360109 CDS YP_001398632.1 153952281 5388642 complement(1450651..1452498) 1 NC_009707.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1452498 dxs 5388642 dxs Campylobacter jejuni subsp. doylei 269.97 1-deoxy-D-xylulose-5-phosphate synthase YP_001398632.1 1450651 R 360109 CDS YP_001398633.1 153951529 5390449 complement(1452491..1453321) 1 NC_009707.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1453321 fliH 5390449 fliH Campylobacter jejuni subsp. doylei 269.97 flagellar assembly protein H YP_001398633.1 1452491 R 360109 CDS YP_001398634.1 153952104 5389675 complement(1453329..1454357) 1 NC_009707.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1454357 fliG 5389675 fliG Campylobacter jejuni subsp. doylei 269.97 flagellar motor switch protein G YP_001398634.1 1453329 R 360109 CDS YP_001398635.1 153951308 5390477 complement(1454357..1456039) 1 NC_009707.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1456039 fliF 5390477 fliF Campylobacter jejuni subsp. doylei 269.97 flagellar MS-ring protein YP_001398635.1 1454357 R 360109 CDS YP_001398636.1 153951884 5389256 complement(1456094..1457188) 1 NC_009707.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1457188 hisC 5389256 hisC Campylobacter jejuni subsp. doylei 269.97 histidinol-phosphate aminotransferase YP_001398636.1 1456094 R 360109 CDS YP_001398637.1 153952536 5389184 complement(1457178..1458251) 1 NC_009707.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807; chorismate mutase/prephenate dehydratase 1458251 pheA 5389184 pheA Campylobacter jejuni subsp. doylei 269.97 chorismate mutase/prephenate dehydratase YP_001398637.1 1457178 R 360109 CDS YP_001398638.1 153951406 5390198 complement(1458239..1459006) 1 NC_009707.1 identified by match to protein family HMM TIGR01460; HAD family hydrolase 1459006 5390198 JJD26997_1648 Campylobacter jejuni subsp. doylei 269.97 HAD family hydrolase YP_001398638.1 1458239 R 360109 CDS YP_001398639.1 153952333 5389097 complement(1459009..1459626) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1459626 5389097 JJD26997_1649 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398639.1 1459009 R 360109 CDS YP_001398640.1 153951550 5390105 complement(1459623..1460864) 1 NC_009707.1 identified by match to protein family HMM PF01555; modification methylase BslI 1460864 5390105 JJD26997_1650 Campylobacter jejuni subsp. doylei 269.97 modification methylase BslI YP_001398640.1 1459623 R 360109 CDS YP_001398641.1 153951269 5390114 complement(1460866..1462074) 1 NC_009707.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 1462074 lysA 5390114 lysA Campylobacter jejuni subsp. doylei 269.97 diaminopimelate decarboxylase YP_001398641.1 1460866 R 360109 CDS YP_001398642.1 153951775 5388777 complement(1462118..1463176) 1 NC_009707.1 identified by match to protein family HMM PF03739; hypothetical protein 1463176 5388777 JJD26997_1652 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398642.1 1462118 R 360109 CDS YP_001398643.1 153952327 5390343 complement(1463178..1463723) 1 NC_009707.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1463723 pth 5390343 pth Campylobacter jejuni subsp. doylei 269.97 peptidyl-tRNA hydrolase YP_001398643.1 1463178 R 360109 CDS YP_001398644.1 153950943 5389400 complement(1463720..1464256) 1 NC_009707.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1464256 rplY 5389400 rplY Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L25/general stress protein Ctc YP_001398644.1 1463720 R 360109 CDS YP_001398645.1 153951921 5389076 1464390..1464728 1 NC_009707.1 identified by match to protein family HMM PF00893; SMR family multidrug efflux pump 1464728 5389076 JJD26997_1655 Campylobacter jejuni subsp. doylei 269.97 SMR family multidrug efflux pump YP_001398645.1 1464390 D 360109 CDS YP_001398646.1 153951026 5390304 1464730..1465044 1 NC_009707.1 identified by match to protein family HMM PF00893; SMR family multidrug efflux pump 1465044 5390304 JJD26997_1656 Campylobacter jejuni subsp. doylei 269.97 SMR family multidrug efflux pump YP_001398646.1 1464730 D 360109 CDS YP_001398647.1 153952444 5390143 1465054..1465659 1 NC_009707.1 dethiobiotin synthetase 1465659 bioD 5390143 bioD Campylobacter jejuni subsp. doylei 269.97 dethiobiotin synthetase YP_001398647.1 1465054 D 360109 CDS YP_001398648.1 153951988 5388766 complement(1465646..1466929) 1 NC_009707.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1466929 bioA 5388766 bioA Campylobacter jejuni subsp. doylei 269.97 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001398648.1 1465646 R 360109 CDS YP_001398649.1 153952135 5389021 1466997..1468139 1 NC_009707.1 identified by match to protein family HMM PF00155; 8-amino-7-oxononanoate synthase 1468139 bioF 5389021 bioF Campylobacter jejuni subsp. doylei 269.97 8-amino-7-oxononanoate synthase YP_001398649.1 1466997 D 360109 CDS YP_001398650.1 153951131 5388970 1468136..1468747 1 NC_009707.1 identified by match to protein family HMM PF04301; hypothetical protein 1468747 5388970 JJD26997_1660 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398650.1 1468136 D 360109 CDS YP_001398651.1 153952564 5390431 1468744..1469430 1 NC_009707.1 identified by match to protein family HMM PF08242; match to protein family HMM TIGR02072; biotin biosynthesis protein BioC 1469430 5390431 JJD26997_1661 Campylobacter jejuni subsp. doylei 269.97 biotin biosynthesis protein BioC YP_001398651.1 1468744 D 360109 CDS YP_001398652.1 153951361 5389597 complement(1470114..1470245) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1470245 5389597 JJD26997_1663 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398652.1 1470114 R 360109 CDS YP_001398653.1 153951446 5389280 1470303..1470626 1 NC_009707.1 identified by match to protein family HMM PF03459; tobe domain-containing protein 1470626 5389280 JJD26997_1664 Campylobacter jejuni subsp. doylei 269.97 tobe domain-containing protein YP_001398653.1 1470303 D 360109 CDS YP_001398654.1 153952598 5389757 1471321..1472145 1 NC_009707.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1472145 panB 5389757 panB Campylobacter jejuni subsp. doylei 269.97 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001398654.1 1471321 D 360109 CDS YP_001398655.1 153951424 5389753 1472156..1473004 1 NC_009707.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 1473004 panC 5389753 panC Campylobacter jejuni subsp. doylei 269.97 pantoate--beta-alanine ligase YP_001398655.1 1472156 D 360109 CDS YP_001398656.1 153952014 5389018 1473001..1473381 1 NC_009707.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 1473381 panD 5389018 panD Campylobacter jejuni subsp. doylei 269.97 aspartate alpha-decarboxylase YP_001398656.1 1473001 D 360109 CDS YP_001398657.1 153951606 5390072 complement(1473455..1474105) 1 NC_009707.1 identified by match to protein family HMM PF00899; thiF family protein 1474105 5390072 JJD26997_1669 Campylobacter jejuni subsp. doylei 269.97 thiF family protein YP_001398657.1 1473455 R 360109 CDS YP_001398658.1 153951490 5389853 complement(1474098..1474874) 1 NC_009707.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1474874 surE 5389853 surE Campylobacter jejuni subsp. doylei 269.97 stationary phase survival protein SurE YP_001398658.1 1474098 R 360109 CDS YP_001398659.1 153951160 5390112 1476272..1476412 1 NC_009707.1 glycerol-3-phosphate transporter 1476412 5390112 JJD26997_1674 Campylobacter jejuni subsp. doylei 269.97 glycerol-3-phosphate transporter YP_001398659.1 1476272 D 360109 CDS YP_001398660.1 153951716 5388754 1477665..1480127 1 NC_009707.1 identified by match to protein family HMM PF01555; adenine-specific DNA methylase 1480127 5388754 JJD26997_1679 Campylobacter jejuni subsp. doylei 269.97 adenine-specific DNA methylase YP_001398660.1 1477665 D 360109 CDS YP_001398661.1 153951717 5388838 1480127..1480921 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1480921 5388838 JJD26997_1680 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398661.1 1480127 D 360109 CDS YP_001398662.1 153952322 5388839 1480923..1481417 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1481417 5388839 JJD26997_1681 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398662.1 1480923 D 360109 CDS YP_001398663.1 153952267 5389713 1481539..1484382 1 NC_009707.1 identified by match to protein family HMM PF04851; putative type III restriction enzyme R protein 1484382 5389713 JJD26997_1682 Campylobacter jejuni subsp. doylei 269.97 putative type III restriction enzyme R protein YP_001398663.1 1481539 D 360109 CDS YP_001398664.1 153952025 5389684 1484379..1485473 1 NC_009707.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; ipid-A-disaccharide synthase 1485473 lpxB 5389684 lpxB Campylobacter jejuni subsp. doylei 269.97 ipid-A-disaccharide synthase YP_001398664.1 1484379 D 360109 CDS YP_001398665.1 153951319 5388810 1485485..1485970 1 NC_009707.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1485970 greA 5388810 greA Campylobacter jejuni subsp. doylei 269.97 transcription elongation factor GreA YP_001398665.1 1485485 D 360109 CDS YP_001398666.1 153951836 5389505 1486104..1486739 1 NC_009707.1 hypothetical protein 1486739 5389505 JJD26997_1685 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398666.1 1486104 D 360109 CDS YP_001398667.1 153951856 5389894 1486732..1487688 1 NC_009707.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV 1487688 cheV 5389894 cheV Campylobacter jejuni subsp. doylei 269.97 chemotaxis protein CheV YP_001398667.1 1486732 D 360109 CDS YP_001398668.1 153951110 5390191 1487692..1490001 1 NC_009707.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis protein CheA 1490001 cheA 5390191 cheA Campylobacter jejuni subsp. doylei 269.97 chemotaxis protein CheA YP_001398668.1 1487692 D 360109 CDS YP_001398669.1 153952625 5389508 1490006..1490527 1 NC_009707.1 identified by match to protein family HMM PF01584; purine-binding chemotaxis protein CheW 1490527 cheW 5389508 cheW Campylobacter jejuni subsp. doylei 269.97 purine-binding chemotaxis protein CheW YP_001398669.1 1490006 D 360109 CDS YP_001398670.1 153951431 5388664 1490527..1491150 1 NC_009707.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB 1491150 serB 5388664 serB Campylobacter jejuni subsp. doylei 269.97 phosphoserine phosphatase SerB YP_001398670.1 1490527 D 360109 CDS YP_001398671.1 153951122 5390163 1491150..1492127 1 NC_009707.1 Important for the balance of metabolites in the pentose-phosphate pathway; transaldolase 1492127 tal 5390163 tal Campylobacter jejuni subsp. doylei 269.97 transaldolase YP_001398671.1 1491150 D 360109 CDS YP_001398672.1 153952061 5388977 complement(1492128..1492550) 1 NC_009707.1 hypothetical protein 1492550 5388977 JJD26997_1691 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398672.1 1492128 R 360109 CDS YP_001398673.1 153951356 5388798 complement(1492547..1495816) 1 NC_009707.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1495816 carB 5388798 carB Campylobacter jejuni subsp. doylei 269.97 carbamoyl phosphate synthase large subunit YP_001398673.1 1492547 R 360109 CDS YP_001398674.1 153952050 5388917 complement(1496077..1496826) 1 NC_009707.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1496826 5388917 JJD26997_1693 Campylobacter jejuni subsp. doylei 269.97 rod shape-determining protein MreC YP_001398674.1 1496077 R 360109 CDS YP_001398675.1 153951294 5389466 complement(1496816..1497856) 1 NC_009707.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1497856 mreB 5389466 mreB Campylobacter jejuni subsp. doylei 269.97 rod shape-determining protein MreB YP_001398675.1 1496816 R 360109 CDS YP_001398676.1 153951402 5388990 complement(1497868..1499088) 1 NC_009707.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1499088 clpX 5388990 clpX Campylobacter jejuni subsp. doylei 269.97 ATP-dependent protease ATP-binding subunit ClpX YP_001398676.1 1497868 R 360109 CDS YP_001398677.1 153952350 5390203 complement(1499081..1499872) 1 NC_009707.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1499872 lpxA 5390203 lpxA Campylobacter jejuni subsp. doylei 269.97 UDP-N-acetylglucosamine acyltransferase YP_001398677.1 1499081 R 360109 CDS YP_001398678.1 153951640 5390128 complement(1499872..1500312) 1 NC_009707.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1500312 fabZ 5390128 fabZ Campylobacter jejuni subsp. doylei 269.97 (3R)-hydroxymyristoyl-ACP dehydratase YP_001398678.1 1499872 R 360109 CDS YP_001398679.1 153952605 5389262 complement(1500403..1501494) 1 NC_009707.1 identified by match to protein family HMM PF02677; hypothetical protein 1501494 5389262 JJD26997_1698 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398679.1 1500403 R 360109 CDS YP_001398680.1 153951008 5389556 complement(1501494..1501949) 1 NC_009707.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; anti-oxidant AhpCTSA family protein 1501949 5389556 JJD26997_1699 Campylobacter jejuni subsp. doylei 269.97 anti-oxidant AhpCTSA family protein YP_001398680.1 1501494 R 360109 CDS YP_001398681.1 153951774 5389050 complement(1501946..1502152) 1 NC_009707.1 identified by match to protein family HMM PF01361; 4-oxalocrotonate tautomerase 1502152 5389050 JJD26997_1700 Campylobacter jejuni subsp. doylei 269.97 4-oxalocrotonate tautomerase YP_001398681.1 1501946 R 360109 CDS YP_001398682.1 153950966 5390342 1502340..1503437 1 NC_009707.1 identified by match to protein family HMM PF01497; periplasmic binding protein 1503437 5390342 JJD26997_1701 Campylobacter jejuni subsp. doylei 269.97 periplasmic binding protein YP_001398682.1 1502340 D 360109 CDS YP_001398683.1 153951923 5389423 1503434..1504528 1 NC_009707.1 identified by match to protein family HMM PF01497; periplasmic binding protein 1504528 5389423 JJD26997_1702 Campylobacter jejuni subsp. doylei 269.97 periplasmic binding protein YP_001398683.1 1503434 D 360109 CDS YP_001398684.1 153952324 5390306 1504518..1505576 1 NC_009707.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032; heme/hemin ABC transporter permease 1505576 5390306 JJD26997_1703 Campylobacter jejuni subsp. doylei 269.97 heme/hemin ABC transporter permease YP_001398684.1 1504518 D 360109 CDS YP_001398685.1 153951548 5388761 1505563..1506339 1 NC_009707.1 identified by match to protein family HMM PF00005; cobalamin/Fe3+-siderophores ABC transporter ATPase 1506339 5388761 JJD26997_1704 Campylobacter jejuni subsp. doylei 269.97 cobalamin/Fe3+-siderophores ABC transporter ATPase YP_001398685.1 1505563 D 360109 CDS YP_001398686.1 153952528 5389813 1506323..1506760 1 NC_009707.1 identified by match to protein family HMM PF00127; pseudoazurin 1506760 5389813 JJD26997_1705 Campylobacter jejuni subsp. doylei 269.97 pseudoazurin YP_001398686.1 1506323 D 360109 CDS YP_001398687.1 153951718 5390108 1506760..1507605 1 NC_009707.1 identified by match to protein family HMM PF08443; hypothetical protein 1507605 5390108 JJD26997_1706 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398687.1 1506760 D 360109 CDS YP_001398688.1 153951913 5388954 1507651..1508565 1 NC_009707.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1508565 ilvE 5388954 ilvE Campylobacter jejuni subsp. doylei 269.97 branched-chain amino acid aminotransferase YP_001398688.1 1507651 D 360109 CDS YP_001398689.1 153952483 5390407 1508579..1509667 1 NC_009707.1 identified by match to protein family HMM PF01145; SPFH domain-containing protein 1509667 5390407 JJD26997_1708 Campylobacter jejuni subsp. doylei 269.97 SPFH domain-containing protein YP_001398689.1 1508579 D 360109 CDS YP_001398690.1 153952134 5390008 1509700..1510209 1 NC_009707.1 hypothetical protein 1510209 5390008 JJD26997_1709 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398690.1 1509700 D 360109 CDS YP_001398691.1 153951313 5389291 1510209..1510718 1 NC_009707.1 hypothetical protein 1510718 5389291 JJD26997_1710 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398691.1 1510209 D 360109 CDS YP_001398692.1 153951924 5389047 complement(1511673..1511876) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1511876 5389047 JJD26997_1711 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398692.1 1511673 R 360109 CDS YP_001398693.1 153951788 5388891 1514086..1514268 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1514268 5388891 JJD26997_1719 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398693.1 1514086 D 360109 CDS YP_001398694.1 153951071 5389801 1514444..1516438 1 NC_009707.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF05581; methyl-accepting chemotaxis protein 1516438 5389801 JJD26997_1720 Campylobacter jejuni subsp. doylei 269.97 methyl-accepting chemotaxis protein YP_001398694.1 1514444 D 360109 CDS YP_001398695.1 153951908 5389536 1516518..1517237 1 NC_009707.1 hypothetical protein 1517237 5389536 JJD26997_1721 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398695.1 1516518 D 360109 CDS YP_001398696.1 153951359 5390139 complement(1517539..1518546) 1 NC_009707.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1518546 pyrC 5390139 pyrC Campylobacter jejuni subsp. doylei 269.97 dihydroorotase YP_001398696.1 1517539 R 360109 CDS YP_001398697.1 153952046 5389278 complement(1518536..1518781) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1518781 5389278 JJD26997_1723 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398697.1 1518536 R 360109 CDS YP_001398698.1 153951568 5389353 complement(1518778..1519134) 1 NC_009707.1 identified by match to protein family HMM PF01219; diacylglycerol kinase 1519134 dgkA 5389353 dgkA Campylobacter jejuni subsp. doylei 269.97 diacylglycerol kinase YP_001398698.1 1518778 R 360109 CDS YP_001398699.1 153952314 5389959 complement(1519131..1520669) 1 NC_009707.1 identified by match to protein family HMM PF00884; match to protein family HMM PF08019; sulfatase 1520669 5389959 JJD26997_1725 Campylobacter jejuni subsp. doylei 269.97 sulfatase YP_001398699.1 1519131 R 360109 CDS YP_001398700.1 153951702 5390028 complement(1520700..1521941) 1 NC_009707.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISHa1675 transposase B 1521941 5390028 JJD26997_1726 Campylobacter jejuni subsp. doylei 269.97 ISHa1675 transposase B YP_001398700.1 1520700 R 360109 CDS YP_001398701.1 153952017 5389924 1522588..1522701 1 NC_009707.1 hypothetical protein 1522701 5389924 JJD26997_1728 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398701.1 1522588 D 360109 CDS YP_001398702.1 153951931 5389594 complement(1524521..1526014) 1 NC_009707.1 identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; hydrogenase, (NiFe)/(NiFeSe) small subunit family 1526014 5389594 JJD26997_1733 Campylobacter jejuni subsp. doylei 269.97 hydrogenase, (NiFe)/(NiFeSe) small subunit family YP_001398702.1 1524521 R 360109 CDS YP_001398703.1 153951593 5389259 complement(1526018..1526842) 1 NC_009707.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 1526842 fabI 5389259 fabI Campylobacter jejuni subsp. doylei 269.97 enoyl-(acyl carrier protein) reductase YP_001398703.1 1526018 R 360109 CDS YP_001398704.1 153952122 5389090 complement(1526846..1527517) 1 NC_009707.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1527517 tpiA 5389090 tpiA Campylobacter jejuni subsp. doylei 269.97 triosephosphate isomerase YP_001398704.1 1526846 R 360109 CDS YP_001398705.1 153951165 5389482 complement(1527514..1528716) 1 NC_009707.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1528716 pgk 5389482 pgk Campylobacter jejuni subsp. doylei 269.97 phosphoglycerate kinase YP_001398705.1 1527514 R 360109 CDS YP_001398706.1 153951381 5388912 complement(1528726..1529718) 1 NC_009707.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase A 1529718 gapA 5388912 gapA Campylobacter jejuni subsp. doylei 269.97 glyceraldehyde 3-phosphate dehydrogenase A YP_001398706.1 1528726 R 360109 CDS YP_001398707.1 153952443 5389519 1530352..1530678 1 NC_009707.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; hypothetical protein 1530678 5389519 JJD26997_1739 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398707.1 1530352 D 360109 CDS YP_001398708.1 153951994 5388579 complement(1531030..1532400) 1 NC_009707.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 1532400 algC 5388579 algC Campylobacter jejuni subsp. doylei 269.97 phosphomannomutase YP_001398708.1 1531030 R 360109 CDS YP_001398709.1 153952291 5389492 1532518..1533054 1 NC_009707.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1533054 fliL 5389492 fliL Campylobacter jejuni subsp. doylei 269.97 flagellar basal body-associated protein FliL YP_001398709.1 1532518 D 360109 CDS YP_001398710.1 153951701 5389374 1533054..1533401 1 NC_009707.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1533401 acpS 5389374 acpS Campylobacter jejuni subsp. doylei 269.97 4'-phosphopantetheinyl transferase YP_001398710.1 1533054 D 360109 CDS YP_001398711.1 153952230 5389857 complement(1533402..1533821) 1 NC_009707.1 hypothetical protein 1533821 5389857 JJD26997_1743 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398711.1 1533402 R 360109 CDS YP_001398712.1 153951452 5390242 complement(1533818..1535179) 1 NC_009707.1 identified by match to protein family HMM PF00067; cytochrome P450 family protein 1535179 5390242 JJD26997_1744 Campylobacter jejuni subsp. doylei 269.97 cytochrome P450 family protein YP_001398712.1 1533818 R 360109 CDS YP_001398713.1 153951813 5388944 complement(1535176..1536297) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1536297 5388944 JJD26997_1745 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398713.1 1535176 R 360109 CDS YP_001398714.1 153951268 5388998 complement(1536350..1537537) 1 NC_009707.1 identified by match to protein family HMM PF05159; capsule polysaccharide export protein KpsS 1537537 5388998 JJD26997_1746 Campylobacter jejuni subsp. doylei 269.97 capsule polysaccharide export protein KpsS YP_001398714.1 1536350 R 360109 CDS YP_001398715.1 153951763 5388776 complement(1537566..1539632) 1 NC_009707.1 identified by match to protein family HMM PF05159; capsule polysaccharide export protein KpsC 1539632 5388776 JJD26997_1747 Campylobacter jejuni subsp. doylei 269.97 capsule polysaccharide export protein KpsC YP_001398715.1 1537566 R 360109 CDS YP_001398716.1 153952431 5389487 complement(1539629..1540141) 1 NC_009707.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 1540141 5389487 JJD26997_1748 Campylobacter jejuni subsp. doylei 269.97 adenylylsulfate kinase YP_001398716.1 1539629 R 360109 CDS YP_001398717.1 153951935 5388755 complement(1540131..1540892) 1 NC_009707.1 identified by match to protein family HMM PF00483; putative sugar-1-phosphate nucleotidyltransferase 1540892 5388755 JJD26997_1749 Campylobacter jejuni subsp. doylei 269.97 putative sugar-1-phosphate nucleotidyltransferase YP_001398717.1 1540131 R 360109 CDS YP_001398718.1 153951552 5389306 complement(1540894..1541433) 1 NC_009707.1 hypothetical protein 1541433 5389306 JJD26997_1750 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398718.1 1540894 R 360109 CDS YP_001398719.1 153952529 5389985 complement(1541487..1543826) 1 NC_009707.1 identified by match to protein family HMM PF00391; hypothetical protein 1543826 5389985 JJD26997_1751 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398719.1 1541487 R 360109 CDS YP_001398720.1 153951637 5390109 complement(1543841..1544602) 1 NC_009707.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; putative methyltransferase 1544602 5390109 JJD26997_1752 Campylobacter jejuni subsp. doylei 269.97 putative methyltransferase YP_001398720.1 1543841 R 360109 CDS YP_001398721.1 153951638 5389471 complement(1544653..1545426) 1 NC_009707.1 identified by match to protein family HMM PF08241; putative methyltransferase 1545426 5389471 JJD26997_1753 Campylobacter jejuni subsp. doylei 269.97 putative methyltransferase YP_001398721.1 1544653 R 360109 CDS YP_001398722.1 153951275 5389302 complement(1547379..1548050) 1 NC_009707.1 identified by match to protein family HMM PF00483; D-glycero-D-manno-heptose 1-phosphate guanosyltransferase 1548050 5389302 JJD26997_1755 Campylobacter jejuni subsp. doylei 269.97 D-glycero-D-manno-heptose 1-phosphate guanosyltransferase YP_001398722.1 1547379 R 360109 CDS YP_001398723.1 153951999 5390311 complement(1548038..1548634) 1 NC_009707.1 identified by match to protein family HMM TIGR00441; phosphoheptose isomerase 1548634 gmhA 5390311 gmhA Campylobacter jejuni subsp. doylei 269.97 phosphoheptose isomerase YP_001398723.1 1548038 R 360109 CDS YP_001398724.1 153952078 5389537 complement(1548627..1548764) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1548764 5389537 JJD26997_1757 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398724.1 1548627 R 360109 CDS YP_001398725.1 153951453 5388861 complement(1549869..1550888) 1 NC_009707.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; D-glycero-D-manno-heptose 7-phosphate kinase 1550888 5388861 JJD26997_1759 Campylobacter jejuni subsp. doylei 269.97 D-glycero-D-manno-heptose 7-phosphate kinase YP_001398725.1 1549869 R 360109 CDS YP_001398726.1 153952200 5388916 complement(1551779..1552720) 1 NC_009707.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; HrEpiB 1552720 5388916 JJD26997_1762 Campylobacter jejuni subsp. doylei 269.97 HrEpiB YP_001398726.1 1551779 R 360109 CDS YP_001398727.1 153951939 5388746 complement(1552744..1553781) 1 NC_009707.1 identified by match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; GDP-mannose 4,6-dehydratase 1553781 5388746 JJD26997_1763 Campylobacter jejuni subsp. doylei 269.97 GDP-mannose 4,6-dehydratase YP_001398727.1 1552744 R 360109 CDS YP_001398728.1 153952477 5389459 complement(1553790..1554851) 1 NC_009707.1 identified by match to protein family HMM PF01370; GDP-fucose synthetase 1554851 5389459 JJD26997_1764 Campylobacter jejuni subsp. doylei 269.97 GDP-fucose synthetase YP_001398728.1 1553790 R 360109 CDS YP_001398729.1 153951703 5389172 complement(1554932..1555993) 1 NC_009707.1 identified by match to protein family HMM PF01370; GDP-fucose synthetase 1555993 5389172 JJD26997_1765 Campylobacter jejuni subsp. doylei 269.97 GDP-fucose synthetase YP_001398729.1 1554932 R 360109 CDS YP_001398730.1 153951506 5389127 complement(1555993..1556922) 1 NC_009707.1 hypothetical protein 1556922 5389127 JJD26997_1766 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398730.1 1555993 R 360109 CDS YP_001398731.1 153951045 5389964 complement(1560283..1560759) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1560759 5389964 JJD26997_1773 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398731.1 1560283 R 360109 CDS YP_001398732.1 153952544 5389690 complement(1562685..1563665) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1563665 5389690 JJD26997_1777 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398732.1 1562685 R 360109 CDS YP_001398733.1 153951764 5390096 complement(1563662..1564609) 1 NC_009707.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; arabinose-5-phosphate isomerase 1564609 kpsF 5390096 kpsF Campylobacter jejuni subsp. doylei 269.97 arabinose-5-phosphate isomerase YP_001398733.1 1563662 R 360109 CDS YP_001398734.1 153951855 5388792 complement(1564619..1566277) 1 NC_009707.1 identified by match to protein family HMM PF02563; capsular polysaccharide ABC transporter periplasmic polysaccharide-binding protein 1566277 kpsD 5388792 kpsD Campylobacter jejuni subsp. doylei 269.97 capsular polysaccharide ABC transporter periplasmic polysaccharide-binding protein YP_001398734.1 1564619 R 360109 CDS YP_001398735.1 153952331 5390190 complement(1566279..1567397) 1 NC_009707.1 identified by match to protein family HMM PF02706; capsular polysaccharide ABC transporter 1567397 kpsE 5390190 kpsE Campylobacter jejuni subsp. doylei 269.97 capsular polysaccharide ABC transporter YP_001398735.1 1566279 R 360109 CDS YP_001398736.1 153951373 5390514 complement(1567397..1568059) 1 NC_009707.1 identified by match to protein family HMM PF00005; capsular polysaccharide ABC transporter ATP-binding protein 1568059 kpsT 5390514 kpsT Campylobacter jejuni subsp. doylei 269.97 capsular polysaccharide ABC transporter ATP-binding protein YP_001398736.1 1567397 R 360109 CDS YP_001398737.1 153952110 5390327 complement(1568056..1568838) 1 NC_009707.1 identified by match to protein family HMM PF01061; capsular polysaccharide ABC transporter permease 1568838 kpsM 5390327 kpsM Campylobacter jejuni subsp. doylei 269.97 capsular polysaccharide ABC transporter permease YP_001398737.1 1568056 R 360109 CDS YP_001398738.1 153951867 5389577 complement(1568915..1569322) 1 NC_009707.1 hypothetical protein 1569322 5389577 JJD26997_1783 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398738.1 1568915 R 360109 CDS YP_001398739.1 153952573 5389525 1569401..1569964 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1569964 5389525 JJD26997_1784 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398739.1 1569401 D 360109 CDS YP_001398740.1 153952062 5389228 1570001..1570690 1 NC_009707.1 identified by match to protein family HMM PF08761; deoxyuridine triphosphatase domain-containing protein 1570690 5389228 JJD26997_1785 Campylobacter jejuni subsp. doylei 269.97 deoxyuridine triphosphatase domain-containing protein YP_001398740.1 1570001 D 360109 CDS YP_001398741.1 153952384 5388799 1570692..1571405 1 NC_009707.1 identified by match to protein family HMM PF04401; hypothetical protein 1571405 5388799 JJD26997_1787 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398741.1 1570692 D 360109 CDS YP_001398742.1 153951323 5389024 complement(1571388..1572353) 1 NC_009707.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; tRNA(Ile)-lysidine synthetase 1572353 tilS 5389024 tilS Campylobacter jejuni subsp. doylei 269.97 tRNA(Ile)-lysidine synthetase YP_001398742.1 1571388 R 360109 CDS YP_001398743.1 153951469 5388597 complement(1572343..1573710) 1 NC_009707.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; putative tRNA modifying protein 1573710 yliG 5388597 yliG Campylobacter jejuni subsp. doylei 269.97 putative tRNA modifying protein YP_001398743.1 1572343 R 360109 CDS YP_001398744.1 153952316 5388950 1575517..1576614 1 NC_009707.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 1576614 prfB 5388950 prfB Campylobacter jejuni subsp. doylei 269.97 peptide chain release factor 2 YP_001398744.1 1575517 D 360109 CDS YP_001398745.1 153952392 5390317 1576810..1577841 1 NC_009707.1 identified by match to protein family HMM PF01112; putative L-asparaginase 1577841 5390317 JJD26997_1791 Campylobacter jejuni subsp. doylei 269.97 putative L-asparaginase YP_001398745.1 1576810 D 360109 CDS YP_001398746.1 153951422 5389420 complement(1578063..1579181) 1 NC_009707.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 1579181 truD 5389420 truD Campylobacter jejuni subsp. doylei 269.97 tRNA pseudouridine synthase D YP_001398746.1 1578063 R 360109 CDS YP_001398747.1 153951371 5389066 complement(1579150..1579971) 1 NC_009707.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 1579971 5389066 JJD26997_1793 Campylobacter jejuni subsp. doylei 269.97 thiamine monophosphate kinase YP_001398747.1 1579150 R 360109 CDS YP_001398748.1 153952112 5390395 1580058..1581131 1 NC_009707.1 hypothetical protein 1581131 5390395 JJD26997_1794 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398748.1 1580058 D 360109 CDS YP_001398749.1 153952358 5389579 1581128..1581511 1 NC_009707.1 hypothetical protein 1581511 5389579 JJD26997_1795 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398749.1 1581128 D 360109 CDS YP_001398750.1 153951197 5389367 1581504..1582190 1 NC_009707.1 identified by match to protein family HMM PF03602; putative site-specific DNA methyltransferase 1582190 5389367 JJD26997_1796 Campylobacter jejuni subsp. doylei 269.97 putative site-specific DNA methyltransferase YP_001398750.1 1581504 D 360109 CDS YP_001398751.1 153952513 5390250 complement(1582191..1582730) 1 NC_009707.1 alpha-2,3-sialyltransferase 1582730 5390250 JJD26997_1797 Campylobacter jejuni subsp. doylei 269.97 alpha-2,3-sialyltransferase YP_001398751.1 1582191 R 360109 CDS YP_001398752.1 153951417 5390175 complement(1582703..1583083) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1583083 5390175 JJD26997_1798 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398752.1 1582703 R 360109 CDS YP_001398753.1 153952238 5389315 complement(1583288..1584424) 1 NC_009707.1 identified by match to protein family HMM PF08241; methyltransferase domain-containing protein 1584424 5389315 JJD26997_1799 Campylobacter jejuni subsp. doylei 269.97 methyltransferase domain-containing protein YP_001398753.1 1583288 R 360109 CDS YP_001398754.1 153951341 5389032 complement(1584411..1585142) 1 NC_009707.1 capsular polysaccharide biosynthesis protein 1585142 5389032 JJD26997_1800 Campylobacter jejuni subsp. doylei 269.97 capsular polysaccharide biosynthesis protein YP_001398754.1 1584411 R 360109 CDS YP_001398755.1 153952663 5390102 complement(1585139..1586662) 1 NC_009707.1 capsular polysaccharide biosynthesis protein 1586662 5390102 JJD26997_1801 Campylobacter jejuni subsp. doylei 269.97 capsular polysaccharide biosynthesis protein YP_001398755.1 1585139 R 360109 CDS YP_001398756.1 153951527 5390084 complement(1586659..1587057) 1 NC_009707.1 identified by match to protein family HMM TIGR01681; match to protein family HMM TIGR01689; capsule biosynthesis phosphatase 1587057 5390084 JJD26997_1802 Campylobacter jejuni subsp. doylei 269.97 capsule biosynthesis phosphatase YP_001398756.1 1586659 R 360109 CDS YP_001398757.1 153951143 5388784 complement(1587112..1587837) 1 NC_009707.1 identified by match to protein family HMM PF00483; dTDP-glucose pyrophosphorylase 1587837 5388784 JJD26997_1803 Campylobacter jejuni subsp. doylei 269.97 dTDP-glucose pyrophosphorylase YP_001398757.1 1587112 R 360109 CDS YP_001398758.1 153951859 5389463 complement(1587834..1588163) 1 NC_009707.1 hypothetical protein 1588163 5389463 JJD26997_1804 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398758.1 1587834 R 360109 CDS YP_001398759.1 153951321 5390303 complement(1588166..1588501) 1 NC_009707.1 hypothetical protein 1588501 5390303 JJD26997_1805 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398759.1 1588166 R 360109 CDS YP_001398760.1 153952121 5389694 complement(1588494..1589219) 1 NC_009707.1 putative nucleotidyltransferase 1589219 5389694 JJD26997_1806 Campylobacter jejuni subsp. doylei 269.97 putative nucleotidyltransferase YP_001398760.1 1588494 R 360109 CDS YP_001398761.1 153951264 5390590 complement(1589213..1589851) 1 NC_009707.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD superfamily hydrolase 1589851 5390590 JJD26997_1807 Campylobacter jejuni subsp. doylei 269.97 HAD superfamily hydrolase YP_001398761.1 1589213 R 360109 CDS YP_001398762.1 153952041 5389452 complement(1589844..1590482) 1 NC_009707.1 hypothetical protein 1590482 5389452 JJD26997_1808 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398762.1 1589844 R 360109 CDS YP_001398763.1 153951711 5389828 1590581..1591786 1 NC_009707.1 putative sugar transferase 1591786 5389828 JJD26997_1809 Campylobacter jejuni subsp. doylei 269.97 putative sugar transferase YP_001398763.1 1590581 D 360109 CDS YP_001398764.1 153952301 5390060 1591882..1592928 1 NC_009707.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1592928 flgI 5390060 flgI Campylobacter jejuni subsp. doylei 269.97 flagellar basal body P-ring protein YP_001398764.1 1591882 D 360109 CDS YP_001398765.1 153951174 5389818 1592928..1593269 1 NC_009707.1 hypothetical protein 1593269 5389818 JJD26997_1811 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398765.1 1592928 D 360109 CDS YP_001398766.1 153951993 5390404 1593335..1593529 1 NC_009707.1 hypothetical protein 1593529 5390404 JJD26997_1812 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398766.1 1593335 D 360109 CDS YP_001398767.1 153952608 5389491 1593570..1594004 1 NC_009707.1 hypothetical protein 1594004 5389491 JJD26997_1813 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398767.1 1593570 D 360109 CDS YP_001398768.1 153951647 5388948 1594014..1595840 1 NC_009707.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1595840 flgK 5388948 flgK Campylobacter jejuni subsp. doylei 269.97 flagellar hook-associated protein FlgK YP_001398768.1 1594014 D 360109 CDS YP_001398769.1 153952351 5389447 1595857..1596621 1 NC_009707.1 identified by match to protein family HMM TIGR02757; hypothetical protein 1596621 5389447 JJD26997_1815 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398769.1 1595857 D 360109 CDS YP_001398770.1 153952207 5390129 1596625..1597389 1 NC_009707.1 identified by match to protein family HMM PF01925; hypothetical protein 1597389 5390129 JJD26997_1817 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398770.1 1596625 D 360109 CDS YP_001398771.1 153951437 5389478 complement(1597386..1598564) 1 NC_009707.1 identified by match to protein family HMM PF00482; general secretory pathway protein F 1598564 ctsF 5389478 ctsF Campylobacter jejuni subsp. doylei 269.97 general secretory pathway protein F YP_001398771.1 1597386 R 360109 CDS YP_001398772.1 153951251 5389864 complement(1598561..1600120) 1 NC_009707.1 identified by match to protein family HMM PF00437; general secretory pathway protein E 1600120 ctsE 5389864 ctsE Campylobacter jejuni subsp. doylei 269.97 general secretory pathway protein E YP_001398772.1 1598561 R 360109 CDS YP_001398773.1 153952194 5389230 complement(1600110..1600697) 1 NC_009707.1 transformation system protein 1600697 ctsX 5389230 ctsX Campylobacter jejuni subsp. doylei 269.97 transformation system protein YP_001398773.1 1600110 R 360109 CDS YP_001398774.1 153952001 5390575 complement(1600701..1601309) 1 NC_009707.1 transformation system protein 1601309 ctsP 5390575 ctsP Campylobacter jejuni subsp. doylei 269.97 transformation system protein YP_001398774.1 1600701 R 360109 CDS YP_001398775.1 153952576 5389539 complement(1601302..1602714) 1 NC_009707.1 identified by match to protein family HMM PF00263; match to protein family HMM PF07655; match to protein family HMM PF07660; match to protein family HMM TIGR02519; general secretory pathway protein D 1602714 ctsD 5389539 ctsD Campylobacter jejuni subsp. doylei 269.97 general secretory pathway protein D YP_001398775.1 1601302 R 360109 CDS YP_001398776.1 153951614 5389027 complement(1602692..1603003) 1 NC_009707.1 transformation system protein 1603003 ctsR 5389027 ctsR Campylobacter jejuni subsp. doylei 269.97 transformation system protein YP_001398776.1 1602692 R 360109 CDS YP_001398777.1 153952568 5390610 complement(1603027..1606587) 1 NC_009707.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate ferredoxin/flavodoxin oxidoreductase 1606587 5390610 JJD26997_1823 Campylobacter jejuni subsp. doylei 269.97 pyruvate ferredoxin/flavodoxin oxidoreductase YP_001398777.1 1603027 R 360109 CDS YP_001398778.1 153951790 5389644 complement(1606680..1607321) 1 NC_009707.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD-superfamily hydrolase 1607321 5389644 JJD26997_1824 Campylobacter jejuni subsp. doylei 269.97 HAD-superfamily hydrolase YP_001398778.1 1606680 R 360109 CDS YP_001398779.1 153952340 5389940 complement(1607321..1608280) 1 NC_009707.1 identified by match to protein family HMM PF00691; match to protein family HMM PF01389; fibronectin-binding protein 1608280 cadF 5389940 cadF Campylobacter jejuni subsp. doylei 269.97 fibronectin-binding protein YP_001398779.1 1607321 R 360109 CDS YP_001398780.1 153951535 5390081 complement(1608403..1608792) 1 NC_009707.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1608792 rpsI 5390081 rpsI Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S9 YP_001398780.1 1608403 R 360109 CDS YP_001398781.1 153951839 5389145 complement(1608795..1609238) 1 NC_009707.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1609238 rplM 5389145 rplM Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L13 YP_001398781.1 1608795 R 360109 CDS YP_001398782.1 153951355 5389673 complement(1609304..1612069) 1 NC_009707.1 identified by match to protein family HMM PF00580; putative recombination protein RecB 1612069 5389673 JJD26997_1828 Campylobacter jejuni subsp. doylei 269.97 putative recombination protein RecB YP_001398782.1 1609304 R 360109 CDS YP_001398783.1 153951609 5388915 complement(1612066..1614432) 1 NC_009707.1 hypothetical protein 1614432 5388915 JJD26997_1829 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398783.1 1612066 R 360109 CDS YP_001398784.1 153952666 5388993 complement(1614429..1614950) 1 NC_009707.1 putative lipoprotein 1614950 5388993 JJD26997_1830 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001398784.1 1614429 R 360109 CDS YP_001398785.1 153951211 5390270 complement(1614937..1615539) 1 NC_009707.1 hypothetical protein 1615539 5390270 JJD26997_1831 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398785.1 1614937 R 360109 CDS YP_001398786.1 153952362 5389798 complement(1615634..1615852) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1615852 5389798 JJD26997_1832 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398786.1 1615634 R 360109 CDS YP_001398787.1 153950996 5390284 complement(1615852..1616715) 1 NC_009707.1 identified by match to protein family HMM PF00034; match to protein family HMM TIGR00782; cytochrome c oxidase, cbb3-type subunit III 1616715 ccoP 5390284 ccoP Campylobacter jejuni subsp. doylei 269.97 cytochrome c oxidase, cbb3-type subunit III YP_001398787.1 1615852 R 360109 CDS YP_001398788.1 153952186 5388600 complement(1616715..1616981) 1 NC_009707.1 identified by match to protein family HMM TIGR02736; cytochrome c oxidase, cbb3-type subunit IV 1616981 ccoQ 5388600 ccoQ Campylobacter jejuni subsp. doylei 269.97 cytochrome c oxidase, cbb3-type subunit IV YP_001398788.1 1616715 R 360109 CDS YP_001398789.1 153952581 5389613 complement(1616983..1617648) 1 NC_009707.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 1617648 ccoO 5389613 ccoO Campylobacter jejuni subsp. doylei 269.97 cbb3-type cytochrome c oxidase subunit II YP_001398789.1 1616983 R 360109 CDS YP_001398790.1 153951418 5390291 complement(1617661..1619127) 1 NC_009707.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 1619127 ccoN 5390291 ccoN Campylobacter jejuni subsp. doylei 269.97 cbb3-type cytochrome c oxidase subunit I YP_001398790.1 1617661 R 360109 CDS YP_001398791.1 153951036 5390496 complement(1619255..1619935) 1 NC_009707.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1619935 5390496 JJD26997_1837 Campylobacter jejuni subsp. doylei 269.97 DNA-binding response regulator YP_001398791.1 1619255 R 360109 CDS YP_001398792.1 153952571 5389615 complement(1621145..1621804) 1 NC_009707.1 hypothetical protein 1621804 5389615 JJD26997_1841 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398792.1 1621145 R 360109 CDS YP_001398793.1 153951494 5390032 complement(1621801..1622919) 1 NC_009707.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1622919 carA 5390032 carA Campylobacter jejuni subsp. doylei 269.97 carbamoyl phosphate synthase small subunit YP_001398793.1 1621801 R 360109 CDS YP_001398794.1 153951749 5389347 complement(1622919..1623470) 1 NC_009707.1 identified by match to protein family HMM PF04368; hypothetical protein 1623470 5389347 JJD26997_1843 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398794.1 1622919 R 360109 CDS YP_001398795.1 153952527 5389094 complement(1623563..1624081) 1 NC_009707.1 hypothetical protein 1624081 5389094 JJD26997_1844 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398795.1 1623563 R 360109 CDS YP_001398796.1 153951185 5390107 complement(1624074..1624355) 1 NC_009707.1 hypothetical protein 1624355 5390107 JJD26997_1845 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398796.1 1624074 R 360109 CDS YP_001398797.1 153951914 5390216 complement(1624499..1625749) 1 NC_009707.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 1625749 purA 5390216 purA Campylobacter jejuni subsp. doylei 269.97 adenylosuccinate synthetase YP_001398797.1 1624499 R 360109 CDS YP_001398798.1 153951496 5388892 1626015..1627223 1 NC_009707.1 identified by match to protein family HMM PF04143; putative inner membrane protein 1627223 5388892 JJD26997_1848 Campylobacter jejuni subsp. doylei 269.97 putative inner membrane protein YP_001398798.1 1626015 D 360109 CDS YP_001398799.1 153952297 5389456 1627227..1627454 1 NC_009707.1 identified by match to protein family HMM PF01206; hypothetical protein 1627454 5389456 JJD26997_1849 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398799.1 1627227 D 360109 CDS YP_001398800.1 153951493 5388926 complement(1627525..1628994) 1 NC_009707.1 identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit 1628994 hsdM 5388926 hsdM Campylobacter jejuni subsp. doylei 269.97 type I restriction-modification system, M subunit YP_001398800.1 1627525 R 360109 CDS YP_001398801.1 153951382 5389545 complement(1629053..1629637) 1 NC_009707.1 identified by match to protein family HMM PF01420; type I restriction modification DNA specificity domain-containing protein 1629637 5389545 JJD26997_1851 Campylobacter jejuni subsp. doylei 269.97 type I restriction modification DNA specificity domain-containing protein YP_001398801.1 1629053 R 360109 CDS YP_001398802.1 153951918 5388654 complement(1629704..1630201) 1 NC_009707.1 identified by match to protein family HMM PF01420; anti-codon nuclease masking agent 1630201 5388654 JJD26997_1852 Campylobacter jejuni subsp. doylei 269.97 anti-codon nuclease masking agent YP_001398802.1 1629704 R 360109 CDS YP_001398803.1 153950959 5390308 complement(1630194..1633163) 1 NC_009707.1 identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction enzyme EcoR124II R protein 1633163 5390308 JJD26997_1853 Campylobacter jejuni subsp. doylei 269.97 type I restriction enzyme EcoR124II R protein YP_001398803.1 1630194 R 360109 CDS YP_001398804.1 153952582 5389904 complement(1633238..1634707) 1 NC_009707.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; sodium/proline permease 1634707 putP 5389904 putP Campylobacter jejuni subsp. doylei 269.97 sodium/proline permease YP_001398804.1 1633238 R 360109 CDS YP_001398805.1 153952583 5390292 complement(1634725..1638213) 1 NC_009707.1 identified by match to protein family HMM PF00171; match to protein family HMM PF01619; putative bifunctional putA protein 1638213 5390292 JJD26997_1855 Campylobacter jejuni subsp. doylei 269.97 putative bifunctional putA protein YP_001398805.1 1634725 R 360109 CDS YP_001398806.1 153952298 5389074 complement(1639374..1639946) 1 NC_009707.1 identified by match to protein family HMM PF01206; hypothetical protein 1639946 5389074 JJD26997_1857 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398806.1 1639374 R 360109 CDS YP_001398807.1 153952201 5389380 complement(1640058..1642160) 1 NC_009707.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1642160 5389380 JJD26997_1858 Campylobacter jejuni subsp. doylei 269.97 methyl-accepting chemotaxis protein YP_001398807.1 1640058 R 360109 CDS YP_001398808.1 153952222 5390165 complement(1642270..1642971) 1 NC_009707.1 molybdate transport repressor 1642971 5390165 JJD26997_1859 Campylobacter jejuni subsp. doylei 269.97 molybdate transport repressor YP_001398808.1 1642270 R 360109 CDS YP_001398809.1 153951228 5388819 complement(1643000..1643782) 1 NC_009707.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 1643782 fdhD 5388819 fdhD Campylobacter jejuni subsp. doylei 269.97 formate dehydrogenase accessory protein YP_001398809.1 1643000 R 360109 CDS YP_001398810.1 153952185 5389190 complement(1643948..1644880) 1 NC_009707.1 identified by match to protein family HMM TIGR01583; formate dehydrogenase, cytochrome b subunit 1644880 fdhC 5389190 fdhC Campylobacter jejuni subsp. doylei 269.97 formate dehydrogenase, cytochrome b subunit YP_001398810.1 1643948 R 360109 CDS YP_001398811.1 153950968 5389988 complement(1644877..1645518) 1 NC_009707.1 identified by match to protein family HMM PF00037; formate dehydrogenase, iron-sulfur subunit 1645518 fdhB 5389988 fdhB Campylobacter jejuni subsp. doylei 269.97 formate dehydrogenase, iron-sulfur subunit YP_001398811.1 1644877 R 360109 CDS YP_001398812.1 153952615 5390433 complement(1648319..1648510) 1 NC_009707.1 identified by match to protein family HMM TIGR01409; Tat pathway signal sequence domain-containing protein 1648510 5390433 JJD26997_1865 Campylobacter jejuni subsp. doylei 269.97 Tat pathway signal sequence domain-containing protein YP_001398812.1 1648319 R 360109 CDS YP_001398813.1 153951646 5389944 complement(1648485..1649186) 1 NC_009707.1 hypothetical protein 1649186 5389944 JJD26997_1866 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398813.1 1648485 R 360109 CDS YP_001398814.1 153952120 5389446 complement(1649501..1650649) 1 NC_009707.1 identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047; carboxynorspermidine decarboxylase 1650649 nspC 5389446 nspC Campylobacter jejuni subsp. doylei 269.97 carboxynorspermidine decarboxylase YP_001398814.1 1649501 R 360109 CDS YP_001398815.1 153951224 5389751 1651349..1652314 1 NC_009707.1 identified by match to protein family HMM PF00394; match to protein family HMM PF07731; multicopper oxidase family protein 1652314 5389751 JJD26997_1869 Campylobacter jejuni subsp. doylei 269.97 multicopper oxidase family protein YP_001398815.1 1651349 D 360109 CDS YP_001398816.1 153952180 5389222 1652316..1652537 1 NC_009707.1 identified by match to protein family HMM PF02597; thiS family protein 1652537 5389222 JJD26997_1870 Campylobacter jejuni subsp. doylei 269.97 thiS family protein YP_001398816.1 1652316 D 360109 CDS YP_001398817.1 153951203 5390197 1652538..1652984 1 NC_009707.1 identified by match to protein family HMM PF02391; molybdopterin converting factor subunit 2 1652984 5390197 JJD26997_1871 Campylobacter jejuni subsp. doylei 269.97 molybdopterin converting factor subunit 2 YP_001398817.1 1652538 D 360109 CDS YP_001398818.1 153951841 5389624 1652988..1654178 1 NC_009707.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; putative molybdopterin biosynthesis MoeA protein 1654178 5389624 JJD26997_1872 Campylobacter jejuni subsp. doylei 269.97 putative molybdopterin biosynthesis MoeA protein YP_001398818.1 1652988 D 360109 CDS YP_001398819.1 153952447 5390443 complement(1654808..1655239) 1 NC_009707.1 identified by match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein 1655239 cas2 5390443 cas2 Campylobacter jejuni subsp. doylei 269.97 CRISPR-associated Cas2 family protein YP_001398819.1 1654808 R 360109 CDS YP_001398820.1 153952137 5390335 complement(1655232..1656122) 1 NC_009707.1 identified by match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein 1656122 cas1 5390335 cas1 Campylobacter jejuni subsp. doylei 269.97 CRISPR-associated Cas1 family protein YP_001398820.1 1655232 R 360109 CDS YP_001398821.1 153952471 5389688 complement(1656109..1659063) 1 NC_009707.1 identified by match to protein family HMM TIGR01865; CRISPR-associated Cas5e family protein 1659063 5389688 JJD26997_1875 Campylobacter jejuni subsp. doylei 269.97 CRISPR-associated Cas5e family protein YP_001398821.1 1656109 R 360109 CDS YP_001398822.1 153951060 5390225 1659798..1659923 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1659923 5390225 JJD26997_1878 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398822.1 1659798 D 360109 CDS YP_001398823.1 153951815 5389963 complement(1660705..1661694) 1 NC_009707.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1661694 purM 5389963 purM Campylobacter jejuni subsp. doylei 269.97 phosphoribosylaminoimidazole synthetase YP_001398823.1 1660705 R 360109 CDS YP_001398824.1 153951069 5389334 1661756..1662361 1 NC_009707.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1662361 coaE 5389334 coaE Campylobacter jejuni subsp. doylei 269.97 dephospho-CoA kinase YP_001398824.1 1661756 D 360109 CDS YP_001398825.1 153951653 5389534 1662358..1663107 1 NC_009707.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1663107 dapF 5389534 dapF Campylobacter jejuni subsp. doylei 269.97 diaminopimelate epimerase YP_001398825.1 1662358 D 360109 CDS YP_001398826.1 153951430 5389936 1663082..1663816 1 NC_009707.1 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein 1663816 5389936 JJD26997_1885 Campylobacter jejuni subsp. doylei 269.97 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein YP_001398826.1 1663082 D 360109 CDS YP_001398827.1 153952640 5390162 complement(1663813..1664850) 1 NC_009707.1 hypothetical protein 1664850 5390162 JJD26997_1884 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398827.1 1663813 R 360109 CDS YP_001398828.1 153951280 5390566 complement(1665426..1666646) 1 NC_009707.1 catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate isomerase 1666646 pgi 5390566 pgi Campylobacter jejuni subsp. doylei 269.97 glucose-6-phosphate isomerase YP_001398828.1 1665426 R 360109 CDS YP_001398829.1 153951805 5390525 complement(1666647..1667465) 1 NC_009707.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 1667465 galU 5390525 galU Campylobacter jejuni subsp. doylei 269.97 UTP-glucose-1-phosphate uridylyltransferase YP_001398829.1 1666647 R 360109 CDS YP_001398830.1 153951113 5390067 complement(1667546..1669519) 1 NC_009707.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 1669519 acs 5390067 acs Campylobacter jejuni subsp. doylei 269.97 acetyl-CoA synthetase YP_001398830.1 1667546 R 360109 CDS YP_001398831.1 153951622 5389540 complement(1669656..1670651) 1 NC_009707.1 identified by match to protein family HMM PF00005; tungsten ABC transporter ATP-binding protein 1670651 5389540 JJD26997_1890 Campylobacter jejuni subsp. doylei 269.97 tungsten ABC transporter ATP-binding protein YP_001398831.1 1669656 R 360109 CDS YP_001398832.1 153951635 5389442 complement(1670653..1671339) 1 NC_009707.1 identified by match to protein family HMM PF00528; putative tungstate ABC transporter permease 1671339 5389442 JJD26997_1891 Campylobacter jejuni subsp. doylei 269.97 putative tungstate ABC transporter permease YP_001398832.1 1670653 R 360109 CDS YP_001398833.1 153952531 5390170 1671419..1672228 1 NC_009707.1 putative tungstate ABC transporter periplasmic tungstate-binding protein 1672228 5390170 JJD26997_1892 Campylobacter jejuni subsp. doylei 269.97 putative tungstate ABC transporter periplasmic tungstate-binding protein YP_001398833.1 1671419 D 360109 CDS YP_001398834.1 153951088 5389836 complement(1674352..1674489) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1674489 5389836 JJD26997_1898 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398834.1 1674352 R 360109 CDS YP_001398835.1 153952535 5390490 1674776..1675543 1 NC_009707.1 identified by match to protein family HMM PF03746; LamB/YcsF family protein 1675543 5390490 JJD26997_1899 Campylobacter jejuni subsp. doylei 269.97 LamB/YcsF family protein YP_001398835.1 1674776 D 360109 CDS YP_001398836.1 153951517 5390539 1675553..1676293 1 NC_009707.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein 1676293 5390539 JJD26997_1900 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398836.1 1675553 D 360109 CDS YP_001398837.1 153952182 5389383 1676274..1677239 1 NC_009707.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; hypothetical protein 1677239 5389383 JJD26997_1902 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398837.1 1676274 D 360109 CDS YP_001398838.1 153950957 5388741 complement(1677236..1678132) 1 NC_009707.1 identified by match to protein family HMM PF00892; integral membrane protein 1678132 5388741 JJD26997_1901 Campylobacter jejuni subsp. doylei 269.97 integral membrane protein YP_001398838.1 1677236 R 360109 CDS YP_001398839.1 153951581 5389902 complement(1678165..1678743) 1 NC_009707.1 identified by match to protein family HMM PF02525; flavodoxin-like fold domain-containing protein 1678743 5389902 JJD26997_1903 Campylobacter jejuni subsp. doylei 269.97 flavodoxin-like fold domain-containing protein YP_001398839.1 1678165 R 360109 CDS YP_001398840.1 153952332 5389215 1678913..1679131 1 NC_009707.1 identified by match to protein family HMM PF08212; putative BLC protein-like protein 1679131 5389215 JJD26997_1904 Campylobacter jejuni subsp. doylei 269.97 putative BLC protein-like protein YP_001398840.1 1678913 D 360109 CDS YP_001398841.1 153951737 5390515 complement(1679133..1680209) 1 NC_009707.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; zinc-binding dehydrogenase family oxidoreductase 1680209 5390515 JJD26997_1905 Campylobacter jejuni subsp. doylei 269.97 zinc-binding dehydrogenase family oxidoreductase YP_001398841.1 1679133 R 360109 CDS YP_001398842.1 153952144 5389014 1682735..1683232 1 NC_009707.1 prophage ps3 protein 01 1683232 5389014 JJD26997_1909 Campylobacter jejuni subsp. doylei 269.97 prophage ps3 protein 01 YP_001398842.1 1682735 D 360109 CDS YP_001398843.1 153951549 5390378 1683219..1683668 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1683668 5390378 JJD26997_1910 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398843.1 1683219 D 360109 CDS YP_001398844.1 153952538 5389814 1683899..1685260 1 NC_009707.1 identified by match to protein family HMM PF01420; hypothetical protein 1685260 5389814 JJD26997_1911 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398844.1 1683899 D 360109 CDS YP_001398845.1 153951369 5389521 1685381..1686451 1 NC_009707.1 identified by match to protein family HMM PF02661; putative MloA protein 1686451 5389521 JJD26997_1912 Campylobacter jejuni subsp. doylei 269.97 putative MloA protein YP_001398845.1 1685381 D 360109 CDS YP_001398846.1 153952029 5390337 1688239..1690200 1 NC_009707.1 identified by match to protein family HMM PF00015; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1690200 5390337 JJD26997_1915 Campylobacter jejuni subsp. doylei 269.97 methyl-accepting chemotaxis protein YP_001398846.1 1688239 D 360109 CDS YP_001398847.1 153952579 5390094 complement(1690243..1692609) 1 NC_009707.1 paralyzed flagella protein PflA 1692609 pflA 5390094 pflA Campylobacter jejuni subsp. doylei 269.97 paralyzed flagella protein PflA YP_001398847.1 1690243 R 360109 CDS YP_001398848.1 153951391 5389873 complement(1692631..1694019) 1 NC_009707.1 identified by match to protein family HMM PF00361; NADH-quinone oxidoreductase subunit N 1694019 nuoN 5389873 nuoN Campylobacter jejuni subsp. doylei 269.97 NADH-quinone oxidoreductase subunit N YP_001398848.1 1692631 R 360109 CDS YP_001398849.1 153952491 5390463 complement(1694009..1695496) 1 NC_009707.1 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-quinone oxidoreductase subunit M 1695496 nuoM 5390463 nuoM Campylobacter jejuni subsp. doylei 269.97 NADH-quinone oxidoreductase subunit M YP_001398849.1 1694009 R 360109 CDS YP_001398850.1 153951065 5390465 complement(1695498..1697288) 1 NC_009707.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1697288 nuoL 5390465 nuoL Campylobacter jejuni subsp. doylei 269.97 NADH dehydrogenase subunit L YP_001398850.1 1695498 R 360109 CDS YP_001398851.1 153951832 5390245 complement(1697290..1697586) 1 NC_009707.1 identified by match to protein family HMM PF00420; NADH-quinone oxidoreductase subunit K 1697586 nuoK 5390245 nuoK Campylobacter jejuni subsp. doylei 269.97 NADH-quinone oxidoreductase subunit K YP_001398851.1 1697290 R 360109 CDS YP_001398852.1 153951541 5390374 complement(1697583..1698101) 1 NC_009707.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 1698101 nuoJ 5390374 nuoJ Campylobacter jejuni subsp. doylei 269.97 NADH dehydrogenase subunit J YP_001398852.1 1697583 R 360109 CDS YP_001398853.1 153951035 5390116 complement(1698098..1698739) 1 NC_009707.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1698739 nuoI 5390116 nuoI Campylobacter jejuni subsp. doylei 269.97 NADH dehydrogenase subunit I YP_001398853.1 1698098 R 360109 CDS YP_001398854.1 153952210 5388737 complement(1698749..1699747) 1 NC_009707.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1699747 nuoH 5388737 nuoH Campylobacter jejuni subsp. doylei 269.97 NADH dehydrogenase subunit H YP_001398854.1 1698749 R 360109 CDS YP_001398855.1 153952567 5389186 complement(1699740..1702202) 1 NC_009707.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 1702202 nuoG 5389186 nuoG Campylobacter jejuni subsp. doylei 269.97 NADH dehydrogenase subunit G YP_001398855.1 1699740 R 360109 CDS YP_001398856.1 153951929 5389643 complement(1702199..1702891) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1702891 5389643 JJD26997_1925 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398856.1 1702199 R 360109 CDS YP_001398857.1 153951396 5389257 complement(1702888..1703028) 1 NC_009707.1 hypothetical protein 1703028 5389257 JJD26997_1926 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398857.1 1702888 R 360109 CDS YP_001398858.1 153952543 5389197 complement(1703112..1704338) 1 NC_009707.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1704338 nuoD 5389197 nuoD Campylobacter jejuni subsp. doylei 269.97 NADH dehydrogenase subunit D YP_001398858.1 1703112 R 360109 CDS YP_001398859.1 153951177 5389176 complement(1704340..1705131) 1 NC_009707.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit C 1705131 nuoC 5389176 nuoC Campylobacter jejuni subsp. doylei 269.97 NADH dehydrogenase subunit C YP_001398859.1 1704340 R 360109 CDS YP_001398860.1 153952278 5388705 complement(1705131..1705634) 1 NC_009707.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1705634 nuoB 5388705 nuoB Campylobacter jejuni subsp. doylei 269.97 NADH dehydrogenase subunit B YP_001398860.1 1705131 R 360109 CDS YP_001398861.1 153951891 5389587 complement(1705616..1706005) 1 NC_009707.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit A 1706005 nuoA 5389587 nuoA Campylobacter jejuni subsp. doylei 269.97 NADH dehydrogenase subunit A YP_001398861.1 1705616 R 360109 CDS YP_001398862.1 153951152 5388685 complement(1706118..1706783) 1 NC_009707.1 identified by match to protein family HMM PF00005; peptide ABC transporter, ATP-binding protein 1706783 5388685 JJD26997_1931 Campylobacter jejuni subsp. doylei 269.97 peptide ABC transporter, ATP-binding protein YP_001398862.1 1706118 R 360109 CDS YP_001398863.1 153950981 5389202 complement(1706776..1707486) 1 NC_009707.1 identified by match to protein family HMM PF00005; peptide ABC transporter, ATP-binding protein 1707486 5389202 JJD26997_1932 Campylobacter jejuni subsp. doylei 269.97 peptide ABC transporter, ATP-binding protein YP_001398863.1 1706776 R 360109 CDS YP_001398864.1 153952644 5388973 complement(1707483..1708271) 1 NC_009707.1 identified by match to protein family HMM PF00528; peptide ABC transporter, permease protein 1708271 5388973 JJD26997_1933 Campylobacter jejuni subsp. doylei 269.97 peptide ABC transporter, permease protein YP_001398864.1 1707483 R 360109 CDS YP_001398865.1 153951654 5390353 complement(1708264..1709208) 1 NC_009707.1 identified by match to protein family HMM PF00528; peptide ABC transporter, permease protein 1709208 5390353 JJD26997_1934 Campylobacter jejuni subsp. doylei 269.97 peptide ABC transporter, permease protein YP_001398865.1 1708264 R 360109 CDS YP_001398866.1 153952421 5389937 complement(1709208..1710743) 1 NC_009707.1 identified by match to protein family HMM PF00496; peptide ABC transporter periplasmic peptide-binding protein 1710743 5389937 JJD26997_1935 Campylobacter jejuni subsp. doylei 269.97 peptide ABC transporter periplasmic peptide-binding protein YP_001398866.1 1709208 R 360109 CDS YP_001398867.1 153951386 5389182 complement(1710852..1713623) 1 NC_009707.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913; oxidoreductase, FAD-binding, iron-sulfur cluster-binding 1713623 5389182 JJD26997_1936 Campylobacter jejuni subsp. doylei 269.97 oxidoreductase, FAD-binding, iron-sulfur cluster-binding YP_001398867.1 1710852 R 360109 CDS YP_001398868.1 153951456 5388872 1713775..1714197 1 NC_009707.1 identified by match to protein family HMM PF00042; hypothetical protein 1714197 5388872 JJD26997_1937 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398868.1 1713775 D 360109 CDS YP_001398869.1 153951066 5388834 complement(1714218..1715849) 1 NC_009707.1 efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane protein/ATP-binding component 1715849 5388834 JJD26997_1938 Campylobacter jejuni subsp. doylei 269.97 multidrug transporter membrane protein/ATP-binding component YP_001398869.1 1714218 R 360109 CDS YP_001398870.1 153951785 5389871 complement(1717682..1717822) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1717822 5389871 JJD26997_1942 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398870.1 1717682 R 360109 CDS YP_001398871.1 153951803 5389884 1718154..1718372 1 NC_009707.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1718372 infA 5389884 infA Campylobacter jejuni subsp. doylei 269.97 translation initiation factor IF-1 YP_001398871.1 1718154 D 360109 CDS YP_001398872.1 153951257 5389703 1718660..1719025 1 NC_009707.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1719025 rpsM 5389703 rpsM Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S13 YP_001398872.1 1718660 D 360109 CDS YP_001398873.1 153951410 5389148 1719035..1719427 1 NC_009707.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1719427 rpsK 5389148 rpsK Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S11 YP_001398873.1 1719035 D 360109 CDS YP_001398874.1 153952009 5388881 1719455..1720081 1 NC_009707.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1720081 rpsD 5388881 rpsD Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S4 YP_001398874.1 1719455 D 360109 CDS YP_001398875.1 153951055 5390577 1720094..1721107 1 NC_009707.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1721107 rpoA 5390577 rpoA Campylobacter jejuni subsp. doylei 269.97 DNA-directed RNA polymerase subunit alpha YP_001398875.1 1720094 D 360109 CDS YP_001398876.1 153951800 5389037 1721111..1721464 1 NC_009707.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1721464 rplQ 5389037 rplQ Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L17 YP_001398876.1 1721111 D 360109 CDS YP_001398877.1 153951787 5389909 1721638..1722537 1 NC_009707.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 1722537 hisG 5389909 hisG Campylobacter jejuni subsp. doylei 269.97 ATP phosphoribosyltransferase YP_001398877.1 1721638 D 360109 CDS YP_001398878.1 153951357 5389800 1722545..1723831 1 NC_009707.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1723831 hisD 5389800 hisD Campylobacter jejuni subsp. doylei 269.97 histidinol dehydrogenase YP_001398878.1 1722545 D 360109 CDS YP_001398879.1 153952011 5389008 1723828..1724886 1 NC_009707.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 1724886 hisB 5389008 hisB Campylobacter jejuni subsp. doylei 269.97 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_001398879.1 1723828 D 360109 CDS YP_001398880.1 153951253 5390579 1724896..1725444 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1725444 5390579 JJD26997_1953 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398880.1 1724896 D 360109 CDS YP_001398881.1 153951969 5389232 1725441..1726289 1 NC_009707.1 identified by match to protein family HMM PF01555; DNA methylase 1726289 5389232 JJD26997_1954 Campylobacter jejuni subsp. doylei 269.97 DNA methylase YP_001398881.1 1725441 D 360109 CDS YP_001398882.1 153951018 5389509 1726286..1726873 1 NC_009707.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1726873 hisH 5389509 hisH Campylobacter jejuni subsp. doylei 269.97 imidazole glycerol phosphate synthase subunit HisH YP_001398882.1 1726286 D 360109 CDS YP_001398883.1 153951118 5390238 1726870..1727604 1 NC_009707.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1727604 5390238 JJD26997_1956 Campylobacter jejuni subsp. doylei 269.97 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_001398883.1 1726870 D 360109 CDS YP_001398884.1 153952109 5389917 1727586..1728353 1 NC_009707.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1728353 hisF-2 5389917 hisF-2 Campylobacter jejuni subsp. doylei 269.97 imidazole glycerol phosphate synthase subunit HisF YP_001398884.1 1727586 D 360109 CDS YP_001398885.1 153951441 5389069 1728356..1728979 1 NC_009707.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 1728979 hisI 5389069 hisI Campylobacter jejuni subsp. doylei 269.97 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_001398885.1 1728356 D 360109 CDS YP_001398886.1 153952389 5388680 complement(1729003..1730163) 1 NC_009707.1 putative 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 1730163 5388680 JJD26997_1959 Campylobacter jejuni subsp. doylei 269.97 putative 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase YP_001398886.1 1729003 R 360109 CDS YP_001398887.1 153952410 5390264 complement(1730189..1731295) 1 NC_009707.1 identified by match to protein family HMM PF01883; ATP/GTP-binding protein 1731295 mrp 5390264 mrp Campylobacter jejuni subsp. doylei 269.97 ATP/GTP-binding protein YP_001398887.1 1730189 R 360109 CDS YP_001398888.1 153952415 5389567 1731419..1732534 1 NC_009707.1 bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 1732534 ispDF 5389567 ispDF Campylobacter jejuni subsp. doylei 269.97 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein YP_001398888.1 1731419 D 360109 CDS YP_001398889.1 153952004 5389561 1732531..1733418 1 NC_009707.1 identified by match to protein family HMM PF00072; DNA-binding response regulator 1733418 5389561 JJD26997_1962 Campylobacter jejuni subsp. doylei 269.97 DNA-binding response regulator YP_001398889.1 1732531 D 360109 CDS YP_001398890.1 153951226 5388701 1733396..1734556 1 NC_009707.1 ATP-sulfurylase family protein 1734556 5388701 JJD26997_1963 Campylobacter jejuni subsp. doylei 269.97 ATP-sulfurylase family protein YP_001398890.1 1733396 D 360109 CDS YP_001398891.1 153952462 5389756 1734561..1735061 1 NC_009707.1 identified by match to protein family HMM PF04608; phosphatidylglycerophosphatase A 1735061 pgpA 5389756 pgpA Campylobacter jejuni subsp. doylei 269.97 phosphatidylglycerophosphatase A YP_001398891.1 1734561 D 360109 CDS YP_001398892.1 153951103 5389269 1735140..1735403 1 NC_009707.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1735403 rpsT 5389269 rpsT Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S20 YP_001398892.1 1735140 D 360109 CDS YP_001398893.1 153952433 5390118 1735422..1736489 1 NC_009707.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1736489 prfA 5390118 prfA Campylobacter jejuni subsp. doylei 269.97 peptide chain release factor 1 YP_001398893.1 1735422 D 360109 CDS YP_001398894.1 153952119 5389851 complement(1736503..1737246) 1 NC_009707.1 identified by match to protein family HMM PF01243; hypothetical protein 1737246 5389851 JJD26997_1967 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398894.1 1736503 R 360109 CDS YP_001398895.1 153952500 5388624 1737440..1739512 1 NC_009707.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent heme receptor 1739512 chuA 5388624 chuA Campylobacter jejuni subsp. doylei 269.97 TonB-dependent heme receptor YP_001398895.1 1737440 D 360109 CDS YP_001398896.1 153951720 5390403 1739487..1740473 1 NC_009707.1 identified by match to protein family HMM PF01032; putative hemin ABC transporter permease 1740473 5390403 JJD26997_1969 Campylobacter jejuni subsp. doylei 269.97 putative hemin ABC transporter permease YP_001398896.1 1739487 D 360109 CDS YP_001398897.1 153951086 5390543 1740473..1741249 1 NC_009707.1 identified by match to protein family HMM PF00005; hemin ABC transporter ATP-binding protein 1741249 5390543 JJD26997_1970 Campylobacter jejuni subsp. doylei 269.97 hemin ABC transporter ATP-binding protein YP_001398897.1 1740473 D 360109 CDS YP_001398898.1 153951794 5389777 1741246..1742052 1 NC_009707.1 identified by match to protein family HMM PF01497; putative hemin ABC transporter periplasmic hemin-binding protein 1742052 5389777 JJD26997_1972 Campylobacter jejuni subsp. doylei 269.97 putative hemin ABC transporter periplasmic hemin-binding protein YP_001398898.1 1741246 D 360109 CDS YP_001398899.1 153952343 5389377 1743062..1744321 1 NC_009707.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; alpha-ketoglutarate permease 1744321 kgtP 5389377 kgtP Campylobacter jejuni subsp. doylei 269.97 alpha-ketoglutarate permease YP_001398899.1 1743062 D 360109 CDS YP_001398900.1 153951575 5390501 complement(1744307..1745326) 1 NC_009707.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase 1745326 mutY 5390501 mutY Campylobacter jejuni subsp. doylei 269.97 A/G-specific adenine glycosylase YP_001398900.1 1744307 R 360109 CDS YP_001398901.1 153952595 5389991 1746007..1746150 1 NC_009707.1 hypothetical protein 1746150 5389991 JJD26997_1977 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398901.1 1746007 D 360109 CDS YP_001398902.1 153951063 5389910 1747792..1748313 1 NC_009707.1 hypothetical protein 1748313 5389910 JJD26997_1983 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398902.1 1747792 D 360109 CDS YP_001398903.1 153952475 5389178 complement(1748321..1749685) 1 NC_009707.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 1749685 sdaA 5389178 sdaA Campylobacter jejuni subsp. doylei 269.97 L-serine ammonia-lyase YP_001398903.1 1748321 R 360109 CDS YP_001398904.1 153951645 5389211 complement(1749694..1751016) 1 NC_009707.1 serine transporter 1751016 5389211 JJD26997_1985 Campylobacter jejuni subsp. doylei 269.97 serine transporter YP_001398904.1 1749694 R 360109 CDS YP_001398905.1 153951962 5389767 complement(1751188..1751304) 1 NC_009707.1 hypothetical protein 1751304 5389767 JJD26997_1986 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398905.1 1751188 R 360109 CDS YP_001398906.1 153952311 5390051 1752020..1752445 1 NC_009707.1 identified by match to protein family HMM PF01618; match to protein family HMM TIGR02805; TonB system transport protein ExbB 1752445 exbB-2 5390051 exbB-2 Campylobacter jejuni subsp. doylei 269.97 TonB system transport protein ExbB YP_001398906.1 1752020 D 360109 CDS YP_001398907.1 153952038 5389762 1752417..1752827 1 NC_009707.1 identified by match to protein family HMM PF02472; match to protein family HMM TIGR02804; biopolymer transport exbD protein 1752827 exbD 5389762 exbD Campylobacter jejuni subsp. doylei 269.97 biopolymer transport exbD protein YP_001398907.1 1752417 D 360109 CDS YP_001398908.1 153951306 5389931 1752824..1752997 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1752997 5389931 JJD26997_1989 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398908.1 1752824 D 360109 CDS YP_001398909.1 153951305 5389998 complement(1753424..1754287) 1 NC_009707.1 hypothetical protein 1754287 5389998 JJD26997_1991 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398909.1 1753424 R 360109 CDS YP_001398910.1 153951972 5388803 1754552..1755601 1 NC_009707.1 hypothetical protein 1755601 5388803 JJD26997_1992 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398910.1 1754552 D 360109 CDS YP_001398911.1 153952636 5389507 complement(1757630..1758718) 1 NC_009707.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1758718 aroC 5389507 aroC Campylobacter jejuni subsp. doylei 269.97 chorismate synthase YP_001398911.1 1757630 R 360109 CDS YP_001398912.1 153951733 5388719 complement(1758715..1759392) 1 NC_009707.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1759392 rnc 5388719 rnc Campylobacter jejuni subsp. doylei 269.97 ribonuclease III YP_001398912.1 1758715 R 360109 CDS YP_001398913.1 153951083 5389639 complement(1759379..1759819) 1 NC_009707.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1759819 rnhA 5389639 rnhA Campylobacter jejuni subsp. doylei 269.97 ribonuclease H YP_001398913.1 1759379 R 360109 CDS YP_001398914.1 153952065 5389498 complement(1759806..1760792) 1 NC_009707.1 identified by match to protein family HMM PF07719; hypothetical protein 1760792 5389498 JJD26997_1997 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398914.1 1759806 R 360109 CDS YP_001398915.1 153952420 5389816 1760862..1762679 1 NC_009707.1 synthesizes RNA primers at the replication forks; DNA primase 1762679 dnaG 5389816 dnaG Campylobacter jejuni subsp. doylei 269.97 DNA primase YP_001398915.1 1760862 D 360109 CDS YP_001398916.1 153951478 5389181 1762761..1763033 1 NC_009707.1 identified by match to protein family HMM PF01106; NifU family protein 1763033 5389181 JJD26997_1999 Campylobacter jejuni subsp. doylei 269.97 NifU family protein YP_001398916.1 1762761 D 360109 CDS YP_001398917.1 153951736 5390511 1763020..1763571 1 NC_009707.1 hypothetical protein 1763571 5390511 JJD26997_2000 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398917.1 1763020 D 360109 CDS YP_001398918.1 153952381 5389234 1763555..1764838 1 NC_009707.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1764838 murE 5389234 murE Campylobacter jejuni subsp. doylei 269.97 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001398918.1 1763555 D 360109 CDS YP_001398919.1 153951123 5390440 1764842..1765153 1 NC_009707.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 1765153 5390440 JJD26997_2002 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398919.1 1764842 D 360109 CDS YP_001398920.1 153952603 5388978 1765174..1766244 1 NC_009707.1 PDZ domain-containing protein 1766244 5388978 JJD26997_2003 Campylobacter jejuni subsp. doylei 269.97 PDZ domain-containing protein YP_001398920.1 1765174 D 360109 CDS YP_001398921.1 153952306 5390257 1766241..1767086 1 NC_009707.1 identified by match to protein family HMM PF00348; geranyltranstransferase 1767086 ispA 5390257 ispA Campylobacter jejuni subsp. doylei 269.97 geranyltranstransferase YP_001398921.1 1766241 D 360109 CDS YP_001398922.1 153951644 5390469 1767097..1768995 1 NC_009707.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1768995 tkt 5390469 tkt Campylobacter jejuni subsp. doylei 269.97 transketolase YP_001398922.1 1767097 D 360109 CDS YP_001398923.1 153951693 5389766 1768997..1770106 1 NC_009707.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; ABC transporter permease 1770106 5389766 JJD26997_2006 Campylobacter jejuni subsp. doylei 269.97 ABC transporter permease YP_001398923.1 1768997 D 360109 CDS YP_001398924.1 153952448 5389949 1770107..1770829 1 NC_009707.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1770829 5389949 JJD26997_2007 Campylobacter jejuni subsp. doylei 269.97 ABC transporter ATP-binding protein YP_001398924.1 1770107 D 360109 CDS YP_001398925.1 153951405 5390336 1770832..1771722 1 NC_009707.1 identified by match to protein family HMM PF02470; ABC transporter periplasmic substrate-binding protein 1771722 5390336 JJD26997_2008 Campylobacter jejuni subsp. doylei 269.97 ABC transporter periplasmic substrate-binding protein YP_001398925.1 1770832 D 360109 CDS YP_001398926.1 153951354 5389962 1771722..1772321 1 NC_009707.1 putative lipoprotein 1772321 5389962 JJD26997_2009 Campylobacter jejuni subsp. doylei 269.97 putative lipoprotein YP_001398926.1 1771722 D 360109 CDS YP_001398927.1 153951663 5390039 complement(1773054..1773812) 1 NC_009707.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1773812 map 5390039 map Campylobacter jejuni subsp. doylei 269.97 methionine aminopeptidase YP_001398927.1 1773054 R 360109 CDS YP_001398928.1 153952642 5389080 complement(1773822..1774565) 1 NC_009707.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1774565 murI 5389080 murI Campylobacter jejuni subsp. doylei 269.97 glutamate racemase YP_001398928.1 1773822 R 360109 CDS YP_001398929.1 153952526 5388756 complement(1775038..1776207) 1 NC_009707.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1776207 nhaA 5388756 nhaA Campylobacter jejuni subsp. doylei 269.97 pH-dependent sodium/proton antiporter YP_001398929.1 1775038 R 360109 CDS YP_001398930.1 153952117 5389630 complement(1776204..1777352) 1 NC_009707.1 identified by match to protein family HMM PF06965; match to protein family HMM TIGR00773; Na+/H+ antiporter NhaA 1777352 nhaA-2 5389630 nhaA-2 Campylobacter jejuni subsp. doylei 269.97 Na+/H+ antiporter NhaA YP_001398930.1 1776204 R 360109 CDS YP_001398931.1 153951337 5390517 complement(1777495..1777677) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1777677 5390517 JJD26997_2017 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398931.1 1777495 R 360109 CDS YP_001398932.1 153951901 5389388 1778302..1780392 1 NC_009707.1 identified by match to protein family HMM PF03239; FTR1 family iron permease 1780392 5389388 JJD26997_2018 Campylobacter jejuni subsp. doylei 269.97 FTR1 family iron permease YP_001398932.1 1778302 D 360109 CDS YP_001398933.1 153951128 5389658 1780389..1780928 1 NC_009707.1 hypothetical protein 1780928 5389658 JJD26997_2019 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398933.1 1780389 D 360109 CDS YP_001398934.1 153951946 5389087 1781011..1782411 1 NC_009707.1 identified by match to protein family HMM PF04945; hypothetical protein 1782411 5389087 JJD26997_2020 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398934.1 1781011 D 360109 CDS YP_001398935.1 153950945 5390384 1782401..1783690 1 NC_009707.1 identified by match to protein family HMM PF02687; ABC transporter permease 1783690 5390384 JJD26997_2021 Campylobacter jejuni subsp. doylei 269.97 ABC transporter permease YP_001398935.1 1782401 D 360109 CDS YP_001398936.1 153952654 5389531 1783680..1784798 1 NC_009707.1 identified by match to protein family HMM PF02687; ABC transporter permease 1784798 5389531 JJD26997_2022 Campylobacter jejuni subsp. doylei 269.97 ABC transporter permease YP_001398936.1 1783680 D 360109 CDS YP_001398937.1 153951598 5390420 1784798..1785448 1 NC_009707.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1785448 5390420 JJD26997_2023 Campylobacter jejuni subsp. doylei 269.97 ABC transporter ATP-binding protein YP_001398937.1 1784798 D 360109 CDS YP_001398938.1 153952419 5390503 1785445..1785690 1 NC_009707.1 ABC transporter ATP-binding protein 1785690 5390503 JJD26997_2024 Campylobacter jejuni subsp. doylei 269.97 ABC transporter ATP-binding protein YP_001398938.1 1785445 D 360109 CDS YP_001398939.1 153952399 5389180 1785687..1786175 1 NC_009707.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; putative thiredoxin-like protein 1786175 5389180 JJD26997_2025 Campylobacter jejuni subsp. doylei 269.97 putative thiredoxin-like protein YP_001398939.1 1785687 D 360109 CDS YP_001398940.1 153952616 5389414 1786136..1786639 1 NC_009707.1 identified by match to protein family HMM PF08534; thioredoxin family protein 1786639 5389414 JJD26997_2026 Campylobacter jejuni subsp. doylei 269.97 thioredoxin family protein YP_001398940.1 1786136 D 360109 CDS YP_001398941.1 153951687 5388921 complement(1786648..1787085) 1 NC_009707.1 identified by match to protein family HMM PF04214; hypothetical protein 1787085 5388921 JJD26997_2027 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398941.1 1786648 R 360109 CDS YP_001398942.1 153952277 5389031 1788609..1788809 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1788809 5389031 JJD26997_2030 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398942.1 1788609 D 360109 CDS YP_001398943.1 153951713 5390235 complement(1788858..1789004) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1789004 5390235 JJD26997_2031 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398943.1 1788858 R 360109 CDS YP_001398944.1 153952337 5389006 complement(1789025..1789282) 1 NC_009707.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; plasmid addiction system poison protein 1789282 5389006 JJD26997_2032 Campylobacter jejuni subsp. doylei 269.97 plasmid addiction system poison protein YP_001398944.1 1789025 R 360109 CDS YP_001398945.1 153951571 5390122 complement(1789282..1789515) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1789515 5390122 JJD26997_2033 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398945.1 1789282 R 360109 CDS YP_001398946.1 153952094 5389752 complement(1789526..1789894) 1 NC_009707.1 hypothetical protein 1789894 5389752 JJD26997_2034 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398946.1 1789526 R 360109 CDS YP_001398947.1 153950946 5388903 complement(1789891..1790118) 1 NC_009707.1 hypothetical protein 1790118 5388903 JJD26997_2035 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398947.1 1789891 R 360109 CDS YP_001398948.1 153951738 5389533 complement(1790318..1790515) 1 NC_009707.1 identified by glimmer; putative; hypothetical protein 1790515 5389533 JJD26997_2036 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398948.1 1790318 R 360109 CDS YP_001398949.1 153951974 5389394 complement(1791295..1792143) 1 NC_009707.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1792143 5389394 JJD26997_2043 Campylobacter jejuni subsp. doylei 269.97 DNA ligase YP_001398949.1 1791295 R 360109 CDS YP_001398950.1 153951025 5389764 complement(1792143..1792805) 1 NC_009707.1 hypothetical protein 1792805 5389764 JJD26997_2044 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398950.1 1792143 R 360109 CDS YP_001398951.1 153951880 5390142 complement(1792795..1792998) 1 NC_009707.1 hypothetical protein 1792998 5390142 JJD26997_2045 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398951.1 1792795 R 360109 CDS YP_001398952.1 153951151 5390458 complement(1793064..1794308) 1 NC_009707.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1794308 eno 5390458 eno Campylobacter jejuni subsp. doylei 269.97 phosphopyruvate hydratase YP_001398952.1 1793064 R 360109 CDS YP_001398953.1 153952602 5389201 complement(1794308..1795339) 1 NC_009707.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1795339 recA 5389201 recA Campylobacter jejuni subsp. doylei 269.97 recombinase A YP_001398953.1 1794308 R 360109 CDS YP_001398954.1 153951423 5390256 1795444..1796304 1 NC_009707.1 identified by match to protein family HMM PF02642; hypothetical protein 1796304 5390256 JJD26997_2048 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398954.1 1795444 D 360109 CDS YP_001398955.1 153951007 5389017 1796316..1796585 1 NC_009707.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 1796585 fliQ 5389017 fliQ Campylobacter jejuni subsp. doylei 269.97 flagellar biosynthesis protein FliQ YP_001398955.1 1796316 D 360109 CDS YP_001398956.1 153952353 5389245 1796612..1797358 1 NC_009707.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1797358 murB 5389245 murB Campylobacter jejuni subsp. doylei 269.97 UDP-N-acetylenolpyruvoylglucosamine reductase YP_001398956.1 1796612 D 360109 CDS YP_001398957.1 153952397 5390204 1801247..1803001 1 NC_009707.1 identified by match to protein family HMM PF07719; hypothetical protein 1803001 5390204 JJD26997_2052 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398957.1 1801247 D 360109 CDS YP_001398958.1 153951429 5389412 complement(1803005..1803766) 1 NC_009707.1 hypothetical protein 1803766 5389412 JJD26997_2053 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398958.1 1803005 R 360109 CDS YP_001398959.1 153951297 5390066 complement(1803812..1804576) 1 NC_009707.1 identified by match to protein family HMM PF00459; cysQ protein 1804576 cysQ 5390066 cysQ Campylobacter jejuni subsp. doylei 269.97 cysQ protein YP_001398959.1 1803812 R 360109 CDS YP_001398960.1 153952031 5390568 complement(1804657..1805925) 1 NC_009707.1 identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798; citrate synthase 1805925 gltA 5390568 gltA Campylobacter jejuni subsp. doylei 269.97 citrate synthase YP_001398960.1 1804657 R 360109 CDS YP_001398961.1 153951093 5388933 complement(1806039..1807214) 1 NC_009707.1 identified by match to protein family HMM PF00999; sodium/hydrogen exchanger family protein 1807214 5388933 JJD26997_2056 Campylobacter jejuni subsp. doylei 269.97 sodium/hydrogen exchanger family protein YP_001398961.1 1806039 R 360109 CDS YP_001398962.1 153951861 5389132 complement(1807195..1808031) 1 NC_009707.1 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 1808031 bioB 5389132 bioB Campylobacter jejuni subsp. doylei 269.97 biotin synthase YP_001398962.1 1807195 R 360109 CDS YP_001398963.1 153951428 5389573 complement(1808033..1810135) 1 NC_009707.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1810135 topA 5389573 topA Campylobacter jejuni subsp. doylei 269.97 DNA topoisomerase I YP_001398963.1 1808033 R 360109 CDS YP_001398964.1 153952398 5390065 1810311..1811582 1 NC_009707.1 identified by match to protein family HMM PF07690; major facilitator superfamily protein 1811582 5390065 JJD26997_2059 Campylobacter jejuni subsp. doylei 269.97 major facilitator superfamily protein YP_001398964.1 1810311 D 360109 CDS YP_001398965.1 153951922 5389413 complement(1811650..1813662) 1 NC_009707.1 identified by match to protein family HMM PF02129; match to protein family HMM PF08530; match to protein family HMM TIGR00976; dipeptidyl-peptidase 1813662 5389413 JJD26997_2060 Campylobacter jejuni subsp. doylei 269.97 dipeptidyl-peptidase YP_001398965.1 1811650 R 360109 CDS YP_001398966.1 153951404 5390305 complement(1813646..1814899) 1 NC_009707.1 identified by match to protein family HMM PF07690; major facilitator family protein 1814899 5390305 JJD26997_2061 Campylobacter jejuni subsp. doylei 269.97 major facilitator family protein YP_001398966.1 1813646 R 360109 CDS YP_001398967.1 153952349 5389961 complement(1815092..1816357) 1 NC_009707.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1816357 secY 5389961 secY Campylobacter jejuni subsp. doylei 269.97 preprotein translocase subunit SecY YP_001398967.1 1815092 R 360109 CDS YP_001398968.1 153951162 5390127 complement(1816357..1816749) 1 NC_009707.1 late assembly protein; 50S ribosomal protein L15 1816749 rplO 5390127 rplO Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L15 YP_001398968.1 1816357 R 360109 CDS YP_001398969.1 153952176 5390229 complement(1816754..1817197) 1 NC_009707.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1817197 rpsE 5390229 rpsE Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S5 YP_001398969.1 1816754 R 360109 CDS YP_001398970.1 153952132 5389809 complement(1817209..1817565) 1 NC_009707.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1817565 rplR 5389809 rplR Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L18 YP_001398970.1 1817209 R 360109 CDS YP_001398971.1 153951368 5389289 complement(1817575..1818111) 1 NC_009707.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1818111 rplF 5389289 rplF Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L6 YP_001398971.1 1817575 R 360109 CDS YP_001398972.1 153952320 5388709 complement(1818189..1818584) 1 NC_009707.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1818584 rpsH 5388709 rpsH Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S8 YP_001398972.1 1818189 R 360109 CDS YP_001398973.1 153951564 5388618 complement(1818594..1818779) 1 NC_009707.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 1818779 rpsN 5388618 rpsN Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S14 YP_001398973.1 1818594 R 360109 CDS YP_001398974.1 153951439 5389979 complement(1818781..1819326) 1 NC_009707.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1819326 rplE 5389979 rplE Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L5 YP_001398974.1 1818781 R 360109 CDS YP_001398975.1 153951584 5389649 complement(1819330..1819563) 1 NC_009707.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1819563 rplX 5389649 rplX Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L24 YP_001398975.1 1819330 R 360109 CDS YP_001398976.1 153951945 5388795 complement(1819563..1819931) 1 NC_009707.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1819931 rplN 5388795 rplN Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L14 YP_001398976.1 1819563 R 360109 CDS YP_001398977.1 153951799 5389496 complement(1819931..1820182) 1 NC_009707.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 1820182 rpsQ 5389496 rpsQ Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S17 YP_001398977.1 1819931 R 360109 CDS YP_001398978.1 153952163 5390296 complement(1820192..1820377) 1 NC_009707.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1820377 rpmC 5390296 rpmC Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L29 YP_001398978.1 1820192 R 360109 CDS YP_001398979.1 153951170 5389329 complement(1820364..1820789) 1 NC_009707.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1820789 rplP 5389329 rplP Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L16 YP_001398979.1 1820364 R 360109 CDS YP_001398980.1 153952472 5389607 complement(1820792..1821493) 1 NC_009707.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1821493 rpsC 5389607 rpsC Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S3 YP_001398980.1 1820792 R 360109 CDS YP_001398981.1 153951770 5390557 complement(1821493..1821918) 1 NC_009707.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1821918 rplV 5390557 rplV Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L22 YP_001398981.1 1821493 R 360109 CDS YP_001398982.1 153952339 5388646 complement(1821929..1822210) 1 NC_009707.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1822210 rpsS 5388646 rpsS Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S19 YP_001398982.1 1821929 R 360109 CDS YP_001398983.1 153951569 5390079 complement(1822212..1823042) 1 NC_009707.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1823042 rplB 5390079 rplB Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L2 YP_001398983.1 1822212 R 360109 CDS YP_001398984.1 153951198 5389989 complement(1823044..1823325) 1 NC_009707.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1823325 rplW 5389989 rplW Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L23 YP_001398984.1 1823044 R 360109 CDS YP_001398985.1 153952215 5390251 complement(1823328..1823942) 1 NC_009707.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1823942 rplD 5390251 rplD Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L4 YP_001398985.1 1823328 R 360109 CDS YP_001398986.1 153952159 5390360 complement(1823939..1824514) 1 NC_009707.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1824514 rplC 5390360 rplC Campylobacter jejuni subsp. doylei 269.97 50S ribosomal protein L3 YP_001398986.1 1823939 R 360109 CDS YP_001398987.1 153952248 5389516 complement(1824524..1824835) 1 NC_009707.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1824835 rpsJ 5389516 rpsJ Campylobacter jejuni subsp. doylei 269.97 30S ribosomal protein S10 YP_001398987.1 1824524 R 360109 CDS YP_001398988.1 153951436 5389593 complement(1825032..1825793) 1 NC_009707.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein 1825793 5389593 JJD26997_2083 Campylobacter jejuni subsp. doylei 269.97 RNA pseudouridine synthase family protein YP_001398988.1 1825032 R 360109 CDS YP_001398989.1 153952511 5389862 complement(1825826..1827814) 1 NC_009707.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; metallo-beta-lactamase family protein 1827814 5389862 JJD26997_2084 Campylobacter jejuni subsp. doylei 269.97 metallo-beta-lactamase family protein YP_001398989.1 1825826 R 360109 CDS YP_001398990.1 153952508 5389604 complement(1827789..1828589) 1 NC_009707.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1828589 ksgA 5389604 ksgA Campylobacter jejuni subsp. doylei 269.97 dimethyladenosine transferase YP_001398990.1 1827789 R 360109 CDS YP_001398991.1 153951766 5390294 1828670..1829206 1 NC_009707.1 hypothetical protein 1829206 5390294 JJD26997_2086 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398991.1 1828670 D 360109 CDS YP_001398992.1 153951816 5388794 1829229..1830299 1 NC_009707.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1830299 5388794 JJD26997_2087 Campylobacter jejuni subsp. doylei 269.97 ribosomal RNA large subunit methyltransferase N YP_001398992.1 1829229 D 360109 CDS YP_001398993.1 153951068 5390147 1830936..1831466 1 NC_009707.1 identified by match to protein family HMM PF00583; acetyltransferase 1831466 5390147 JJD26997_2093 Campylobacter jejuni subsp. doylei 269.97 acetyltransferase YP_001398993.1 1830936 D 360109 CDS YP_001398994.1 153951112 5390340 complement(1831446..1832048) 1 NC_009707.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 1832048 leuD 5390340 leuD Campylobacter jejuni subsp. doylei 269.97 isopropylmalate isomerase small subunit YP_001398994.1 1831446 R 360109 CDS YP_001398995.1 153952507 5389305 complement(1832050..1833456) 1 NC_009707.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1833456 leuC 5389305 leuC Campylobacter jejuni subsp. doylei 269.97 isopropylmalate isomerase large subunit YP_001398995.1 1832050 R 360109 CDS YP_001398996.1 153952266 5390293 complement(1833449..1834525) 1 NC_009707.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1834525 leuB 5390293 leuB Campylobacter jejuni subsp. doylei 269.97 3-isopropylmalate dehydrogenase YP_001398996.1 1833449 R 360109 CDS YP_001398997.1 153951315 5388584 complement(1834522..1836057) 1 NC_009707.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1836057 leuA 5388584 leuA Campylobacter jejuni subsp. doylei 269.97 2-isopropylmalate synthase YP_001398997.1 1834522 R 360109 CDS YP_001398998.1 153952092 5389154 complement(1836465..1836845) 1 NC_009707.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1836845 queF 5389154 queF Campylobacter jejuni subsp. doylei 269.97 7-cyano-7-deazaguanine reductase YP_001398998.1 1836465 R 360109 CDS YP_001398999.1 153951006 5390086 1837005..1837604 1 NC_009707.1 identified by match to protein family HMM PF07992; hypothetical protein 1837604 5390086 JJD26997_2099 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001398999.1 1837005 D 360109 CDS YP_001399000.1 153951639 5388936 complement(1838499..1838720) 1 NC_009707.1 identified by match to protein family HMM PF01206; hypothetical protein 1838720 5388936 JJD26997_2100 Campylobacter jejuni subsp. doylei 269.97 hypothetical protein YP_001399000.1 1838499 R 360109 CDS YP_001399001.1 153952356 5389261 complement(1838730..1839764) 1 NC_009707.1 identified by match to protein family HMM PF04143; inner membrane protein YeeE 1839764 5389261 JJD26997_2101 Campylobacter jejuni subsp. doylei 269.97 inner membrane protein YeeE YP_001399001.1 1838730 R 360109 CDS YP_001399002.1 153951416 5388626 complement(1839776..1841047) 1 NC_009707.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326; homoserine O-acetyltransferase 1841047 metX 5388626 metX Campylobacter jejuni subsp. doylei 269.97 homoserine O-acetyltransferase YP_001399002.1 1839776 R 360109 CDS YP_001399003.1 153951692 5388630 complement(1841472..1844099) 1 NC_009707.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1844099 flgE 5388630 flgE Campylobacter jejuni subsp. doylei 269.97 flagellar hook protein FlgE YP_001399003.1 1841472 R 360109 CDS YP_001399004.1 153951955 5389948 complement(1844529..1845011) 1 NC_009707.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1845011 ruvC 5389948 ruvC Campylobacter jejuni subsp. doylei 269.97 Holliday junction resolvase YP_001399004.1 1844529 R 360109 CDS