-- dump date   	20140619_021729
-- class       	Genbank::Feature
-- table       	feature
-- table       	main
-- field 1	id
-- field 2	type
-- field 3	name
-- field 4	contig
-- field 5	start_pos
-- field 6	end_pos
-- field 7	strand
-- field 8	description
-- field 9	chrom_position
-- field 10	organism
-- field 11	GeneID
-- header
-- id	type	name	contig	start_pos	end_pos	strand	description	chrom_position	organism	GeneID
360109000001	SEQ_END	SEQ_END	NC_009707.1	1845106	1845106	DR	NC_009707.1; contig end	1845106..1845106	Campylobacter jejuni subsp. doylei 269.97	<NULL_VALUE>
YP_001397274.1	CDS	dnaA	NC_009707.1	1	1323	D	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein	1..1323	Campylobacter jejuni subsp. doylei 269.97	5388783
YP_001397275.1	CDS	dnaN	NC_009707.1	1483	2550	D	binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta	1483..2550	Campylobacter jejuni subsp. doylei 269.97	5389605
YP_001397276.1	CDS	gyrB	NC_009707.1	2579	4888	D	negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B	2579..4888	Campylobacter jejuni subsp. doylei 269.97	5389220
YP_001397277.1	CDS	actP	NC_009707.1	4936	6582	R	member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease	complement(4936..6582)	Campylobacter jejuni subsp. doylei 269.97	5389646
YP_001397278.1	CDS	JJD26997_0005	NC_009707.1	6579	6938	R	identified by match to protein family HMM PF04341; hypothetical protein	complement(6579..6938)	Campylobacter jejuni subsp. doylei 269.97	5389067
YP_001397279.1	CDS	JJD26997_0006	NC_009707.1	7169	8470	D	identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM PF06808; Na+/H+ antiporter family protein	7169..8470	Campylobacter jejuni subsp. doylei 269.97	5389797
YP_001397280.1	CDS	JJD26997_0007	NC_009707.1	8605	13092	D	identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; glutamate synthase, large subunit	8605..13092	Campylobacter jejuni subsp. doylei 269.97	5390196
YP_001397281.1	CDS	JJD26997_0008	NC_009707.1	13114	14805	D	identified by match to protein family HMM PF03235; match to protein family HMM PF07510; hypothetical protein	13114..14805	Campylobacter jejuni subsp. doylei 269.97	5389927
YP_001397282.1	CDS	gltD	NC_009707.1	14822	16267	D	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta	14822..16267	Campylobacter jejuni subsp. doylei 269.97	5389060
YP_001397283.1	CDS	rnhB	NC_009707.1	16268	16843	R	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII	complement(16268..16843)	Campylobacter jejuni subsp. doylei 269.97	5390315
YP_001397284.1	CDS	comEA	NC_009707.1	16876	17115	R	identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; competence protein ComEA	complement(16876..17115)	Campylobacter jejuni subsp. doylei 269.97	5389204
YP_001397285.1	CDS	rbr	NC_009707.1	17181	17732	R	identified by match to protein family HMM PF00301; match to protein family HMM PF02915; match to protein family HMM PF06397; match to protein family HMM TIGR00319; rubrerythrin	complement(17181..17732)	Campylobacter jejuni subsp. doylei 269.97	5388582
YP_001397286.1	CDS	ilvD	NC_009707.1	17988	19664	D	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase	17988..19664	Campylobacter jejuni subsp. doylei 269.97	5390007
YP_001397287.1	CDS	JJD26997_0015	NC_009707.1	20162	21388	R	hypothetical protein	complement(20162..21388)	Campylobacter jejuni subsp. doylei 269.97	5388596
YP_001397288.1	CDS	JJD26997_0016	NC_009707.1	21465	22139	D	identified by match to protein family HMM PF02568; match to protein family HMM PF06508; match to protein family HMM TIGR00364; exsB protein	21465..22139	Campylobacter jejuni subsp. doylei 269.97	5389572
YP_001397289.1	CDS	JJD26997_0017	NC_009707.1	22160	23686	R	identified by match to protein family HMM PF02600; DsbB family disulfide bond formation protein	complement(22160..23686)	Campylobacter jejuni subsp. doylei 269.97	5388782
YP_001397290.1	CDS	JJD26997_0018	NC_009707.1	23698	23865	R	identified by glimmer; putative; hypothetical protein	complement(23698..23865)	Campylobacter jejuni subsp. doylei 269.97	5389109
YP_001397291.1	CDS	JJD26997_0023	NC_009707.1	26450	27316	R	identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase family protein	complement(26450..27316)	Campylobacter jejuni subsp. doylei 269.97	5390228
YP_001397292.1	CDS	JJD26997_0024	NC_009707.1	27427	28329	R	identified by match to protein family HMM PF00849; RNA pseudouridine synthase family protein	complement(27427..28329)	Campylobacter jejuni subsp. doylei 269.97	5389264
YP_001397293.1	CDS	purB-1	NC_009707.1	28407	29735	D	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase	28407..29735	Campylobacter jejuni subsp. doylei 269.97	5389300
YP_001397294.1	CDS	nrdA	NC_009707.1	29751	32120	D	Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha	29751..32120	Campylobacter jejuni subsp. doylei 269.97	5390320
YP_001397295.1	CDS	JJD26997_0027	NC_009707.1	32159	33544	R	identified by match to protein family HMM PF00375; sodium/dicarboxylate symporter	complement(32159..33544)	Campylobacter jejuni subsp. doylei 269.97	5389286
YP_001397296.1	CDS	thyX	NC_009707.1	33664	34287	R	flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase	complement(33664..34287)	Campylobacter jejuni subsp. doylei 269.97	5390462
YP_001397297.1	CDS	pyrG	NC_009707.1	34406	36037	D	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase	34406..36037	Campylobacter jejuni subsp. doylei 269.97	5390387
YP_001397298.1	CDS	recJ	NC_009707.1	36024	37595	D	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ	36024..37595	Campylobacter jejuni subsp. doylei 269.97	5389146
YP_001397299.1	CDS	ansA	NC_009707.1	37681	38727	D	identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520; L-asparaginase	37681..38727	Campylobacter jejuni subsp. doylei 269.97	5389023
YP_001397300.1	CDS	rhtC	NC_009707.1	41479	42081	D	identified by match to protein family HMM PF01810; threonine efflux protein	41479..42081	Campylobacter jejuni subsp. doylei 269.97	5389407
YP_001397301.1	CDS	JJD26997_0039	NC_009707.1	43048	43188	D	identified by glimmer; putative; hypothetical protein	43048..43188	Campylobacter jejuni subsp. doylei 269.97	5388868
YP_001397302.1	CDS	ggt	NC_009707.1	47433	49103	R	identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066; gamma-glutamyltransferase	complement(47433..49103)	Campylobacter jejuni subsp. doylei 269.97	5390397
YP_001397303.1	CDS	JJD26997_0043	NC_009707.1	49333	53091	D	type II restriction-modification enzyme	49333..53091	Campylobacter jejuni subsp. doylei 269.97	5389203
YP_001397304.1	CDS	JJD26997_0046	NC_009707.1	53802	54632	D	identified by match to protein family HMM PF06421; GTP-binding protein LepA	53802..54632	Campylobacter jejuni subsp. doylei 269.97	5388987
YP_001397305.1	CDS	JJD26997_0045	NC_009707.1	54598	55965	R	identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785; CitT protein	complement(54598..55965)	Campylobacter jejuni subsp. doylei 269.97	5389153
YP_001397306.1	CDS	mraY	NC_009707.1	56076	57065	R	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase	complement(56076..57065)	Campylobacter jejuni subsp. doylei 269.97	5389187
YP_001397307.1	CDS	JJD26997_0048	NC_009707.1	57271	58032	R	identified by match to protein family HMM PF04402; hypothetical protein	complement(57271..58032)	Campylobacter jejuni subsp. doylei 269.97	5388593
YP_001397308.1	CDS	JJD26997_0050	NC_009707.1	58791	60140	D	hypothetical protein	58791..60140	Campylobacter jejuni subsp. doylei 269.97	5389661
YP_001397309.1	CDS	JJD26997_0051	NC_009707.1	60164	61207	R	identified by match to protein family HMM PF00034; cytochrome c family protein	complement(60164..61207)	Campylobacter jejuni subsp. doylei 269.97	5390418
YP_001397310.1	CDS	JJD26997_0052	NC_009707.1	61385	62032	R	identified by glimmer; putative; hypothetical protein	complement(61385..62032)	Campylobacter jejuni subsp. doylei 269.97	5388738
YP_001397311.1	CDS	typA	NC_009707.1	62032	63840	R	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA	complement(62032..63840)	Campylobacter jejuni subsp. doylei 269.97	5389568
YP_001397312.1	CDS	JJD26997_0054	NC_009707.1	63805	63990	D	identified by glimmer; putative; hypothetical protein	63805..63990	Campylobacter jejuni subsp. doylei 269.97	5389168
YP_001397313.1	CDS	JJD26997_0056	NC_009707.1	64317	66083	D	identified by glimmer; putative; hypothetical protein	64317..66083	Campylobacter jejuni subsp. doylei 269.97	5390413
YP_001397314.1	CDS	flgD	NC_009707.1	66142	67005	D	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein	66142..67005	Campylobacter jejuni subsp. doylei 269.97	5389462
YP_001397315.1	CDS	flgE-1	NC_009707.1	67009	68646	D	identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559; flagellar hook protein	67009..68646	Campylobacter jejuni subsp. doylei 269.97	5390476
YP_001397316.1	CDS	JJD26997_0059	NC_009707.1	68650	70518	R	hypothetical protein	complement(68650..70518)	Campylobacter jejuni subsp. doylei 269.97	5390012
YP_001397317.1	CDS	mnmA	NC_009707.1	72256	73272	R	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA	complement(72256..73272)	Campylobacter jejuni subsp. doylei 269.97	5388690
YP_001397318.1	CDS	JJD26997_0063	NC_009707.1	73269	73877	R	identified by match to protein family HMM PF03641; lysine decarboxylase family protein	complement(73269..73877)	Campylobacter jejuni subsp. doylei 269.97	5389376
YP_001397319.1	CDS	JJD26997_0064	NC_009707.1	73996	74733	R	identified by glimmer; putative; hypothetical protein	complement(73996..74733)	Campylobacter jejuni subsp. doylei 269.97	5389022
YP_001397320.1	CDS	JJD26997_0065	NC_009707.1	75063	75206	R	identified by glimmer; putative; hypothetical protein	complement(75063..75206)	Campylobacter jejuni subsp. doylei 269.97	5390401
YP_001397321.1	CDS	JJD26997_0066	NC_009707.1	75558	75737	R	hypothetical protein	complement(75558..75737)	Campylobacter jejuni subsp. doylei 269.97	5389053
YP_001397322.1	CDS	JJD26997_0067	NC_009707.1	76032	76886	D	HmcD domain-containing protein	76032..76886	Campylobacter jejuni subsp. doylei 269.97	5388658
YP_001397323.1	CDS	JJD26997_0068	NC_009707.1	76871	77470	D	identified by match to protein family HMM PF03412; peptidase family protein	76871..77470	Campylobacter jejuni subsp. doylei 269.97	5390322
YP_001397324.1	CDS	fliY	NC_009707.1	77519	78340	R	One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliY	complement(77519..78340)	Campylobacter jejuni subsp. doylei 269.97	5388852
YP_001397325.1	CDS	fliM	NC_009707.1	78358	79437	R	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM	complement(78358..79437)	Campylobacter jejuni subsp. doylei 269.97	5390310
YP_001397326.1	CDS	fliA	NC_009707.1	79437	80153	R	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor	complement(79437..80153)	Campylobacter jejuni subsp. doylei 269.97	5388894
YP_001397327.1	CDS	JJD26997_0072	NC_009707.1	80110	80466	R	hypothetical protein	complement(80110..80466)	Campylobacter jejuni subsp. doylei 269.97	5390030
YP_001397328.1	CDS	JJD26997_0073	NC_009707.1	80485	81351	R	identified by match to protein family HMM PF01656; ParaA family ATPase	complement(80485..81351)	Campylobacter jejuni subsp. doylei 269.97	5389530
YP_001397329.1	CDS	flhF	NC_009707.1	81351	82796	R	positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF	complement(81351..82796)	Campylobacter jejuni subsp. doylei 269.97	5390152
YP_001397330.1	CDS	folK	NC_009707.1	82807	83280	R	identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	complement(82807..83280)	Campylobacter jejuni subsp. doylei 269.97	5390004
YP_001397331.1	CDS	aroQ	NC_009707.1	83283	83762	R	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase	complement(83283..83762)	Campylobacter jejuni subsp. doylei 269.97	5389911
YP_001397332.1	CDS	JJD26997_0077	NC_009707.1	83855	85084	D	Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; chlorohydrolase	83855..85084	Campylobacter jejuni subsp. doylei 269.97	5389026
YP_001397333.1	CDS	sppA	NC_009707.1	85072	85968	D	identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type	85072..85968	Campylobacter jejuni subsp. doylei 269.97	5388643
YP_001397334.1	CDS	JJD26997_0081	NC_009707.1	86846	87004	R	identified by glimmer; putative; hypothetical protein	complement(86846..87004)	Campylobacter jejuni subsp. doylei 269.97	5389773
YP_001397335.1	CDS	JJD26997_0084	NC_009707.1	87775	88431	R	identified by match to protein family HMM PF02589; hypothetical protein	complement(87775..88431)	Campylobacter jejuni subsp. doylei 269.97	5389046
YP_001397336.1	CDS	JJD26997_0085	NC_009707.1	88424	89863	R	identified by match to protein family HMM PF00037; match to protein family HMM PF02589; match to protein family HMM TIGR00273; iron-sulfur cluster binding protein	complement(88424..89863)	Campylobacter jejuni subsp. doylei 269.97	5389899
YP_001397337.1	CDS	JJD26997_0086	NC_009707.1	89860	90597	R	identified by match to protein family HMM PF02754; hypothetical protein	complement(89860..90597)	Campylobacter jejuni subsp. doylei 269.97	5390564
YP_001397338.1	CDS	lctP	NC_009707.1	90721	92403	R	identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease	complement(90721..92403)	Campylobacter jejuni subsp. doylei 269.97	5389150
YP_001397339.1	CDS	JJD26997_0089	NC_009707.1	93169	93438	D	hypothetical protein	93169..93438	Campylobacter jejuni subsp. doylei 269.97	5389582
YP_001397340.1	CDS	cydA	NC_009707.1	93439	95001	D	identified by match to protein family HMM PF01654; cytochrome d ubiquinol oxidase, subunit I	93439..95001	Campylobacter jejuni subsp. doylei 269.97	5390602
YP_001397341.1	CDS	cydB	NC_009707.1	95001	96125	D	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase, subunit II	95001..96125	Campylobacter jejuni subsp. doylei 269.97	5389621
YP_001397342.1	CDS	JJD26997_0092	NC_009707.1	96319	97014	R	identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; putative aspartate racemase	complement(96319..97014)	Campylobacter jejuni subsp. doylei 269.97	5390044
YP_001397343.1	CDS	ung	NC_009707.1	97130	97825	R	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase	complement(97130..97825)	Campylobacter jejuni subsp. doylei 269.97	5390255
YP_001397344.1	CDS	aspA	NC_009707.1	98099	99505	D	catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase	98099..99505	Campylobacter jejuni subsp. doylei 269.97	5388702
YP_001397345.1	CDS	dcuA	NC_009707.1	99531	100859	D	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter	99531..100859	Campylobacter jejuni subsp. doylei 269.97	5388700
YP_001397346.1	CDS	JJD26997_0096	NC_009707.1	101520	104627	D	identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; autotransporter beta-domain-containing protein	101520..104627	Campylobacter jejuni subsp. doylei 269.97	5389956
YP_001397347.1	CDS	JJD26997_0097	NC_009707.1	104880	105815	D	hypothetical protein	104880..105815	Campylobacter jejuni subsp. doylei 269.97	5388590
YP_001397348.1	CDS	rplU	NC_009707.1	105974	106282	D	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21	105974..106282	Campylobacter jejuni subsp. doylei 269.97	5390248
YP_001397349.1	CDS	rpmA	NC_009707.1	106293	106547	D	involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27	106293..106547	Campylobacter jejuni subsp. doylei 269.97	5390273
YP_001397350.1	CDS	obgE	NC_009707.1	106654	107691	D	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE	106654..107691	Campylobacter jejuni subsp. doylei 269.97	5388929
YP_001397351.1	CDS	JJD26997_0103	NC_009707.1	108516	108644	R	identified by glimmer; putative; hypothetical protein	complement(108516..108644)	Campylobacter jejuni subsp. doylei 269.97	5390138
YP_001397352.1	CDS	fmt	NC_009707.1	108654	109571	D	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase	108654..109571	Campylobacter jejuni subsp. doylei 269.97	5389292
YP_001397353.1	CDS	JJD26997_0106	NC_009707.1	109534	110187	D	catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase	109534..110187	Campylobacter jejuni subsp. doylei 269.97	5389365
YP_001397354.1	CDS	JJD26997_0107	NC_009707.1	110184	110969	D	identified by match to protein family HMM PF01656; ParA family chromosome partitioning ATPase	110184..110969	Campylobacter jejuni subsp. doylei 269.97	5389307
YP_001397355.1	CDS	JJD26997_0108	NC_009707.1	110975	111811	D	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family chromosome partitioning protein	110975..111811	Campylobacter jejuni subsp. doylei 269.97	5390037
YP_001397356.1	CDS	JJD26997_0109	NC_009707.1	111875	112300	D	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B'	111875..112300	Campylobacter jejuni subsp. doylei 269.97	5389251
YP_001397357.1	CDS	JJD26997_0110	NC_009707.1	112311	112823	D	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B	112311..112823	Campylobacter jejuni subsp. doylei 269.97	5390325
YP_001397358.1	CDS	atpH	NC_009707.1	112826	113347	D	Produces ATP from ADP in the presence of a proton gradient across the membrane. The delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta	112826..113347	Campylobacter jejuni subsp. doylei 269.97	5390027
YP_001397359.1	CDS	atpA	NC_009707.1	113361	114866	D	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha	113361..114866	Campylobacter jejuni subsp. doylei 269.97	5389855
YP_001397360.1	CDS	atpG	NC_009707.1	114875	115759	D	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma	114875..115759	Campylobacter jejuni subsp. doylei 269.97	5389518
YP_001397361.1	CDS	atpD	NC_009707.1	115784	117238	D	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta	115784..117238	Campylobacter jejuni subsp. doylei 269.97	5389218
YP_001397362.1	CDS	atpC	NC_009707.1	117238	117627	D	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon	117238..117627	Campylobacter jejuni subsp. doylei 269.97	5389733
YP_001397363.1	CDS	JJD26997_0116	NC_009707.1	117627	118181	D	identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein	117627..118181	Campylobacter jejuni subsp. doylei 269.97	5389099
YP_001397364.1	CDS	JJD26997_0117	NC_009707.1	118190	118579	D	identified by match to protein family HMM PF02472; match to protein family HMM TIGR02801; TonB system transport protein ExbD	118190..118579	Campylobacter jejuni subsp. doylei 269.97	5388772
YP_001397365.1	CDS	JJD26997_0118	NC_009707.1	118582	119361	D	TonB domain-containing protein	118582..119361	Campylobacter jejuni subsp. doylei 269.97	5390158
YP_001397366.1	CDS	tolB	NC_009707.1	119371	120579	D	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB	119371..120579	Campylobacter jejuni subsp. doylei 269.97	5390319
YP_001397367.1	CDS	JJD26997_0120	NC_009707.1	120656	121153	D	identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802; peptidoglycan-associated lipoprotein Omp18	120656..121153	Campylobacter jejuni subsp. doylei 269.97	5389682
YP_001397368.1	CDS	JJD26997_0121	NC_009707.1	121157	122104	D	hypothetical protein	121157..122104	Campylobacter jejuni subsp. doylei 269.97	5390354
YP_001397369.1	CDS	slyD	NC_009707.1	122119	122673	D	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD	122119..122673	Campylobacter jejuni subsp. doylei 269.97	5388974
YP_001397370.1	CDS	fabD	NC_009707.1	122673	123593	D	malonyl CoA-acyl carrier protein transacylase	122673..123593	Campylobacter jejuni subsp. doylei 269.97	5389825
YP_001397371.1	CDS	mtnA	NC_009707.1	123593	124279	D	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	123593..124279	Campylobacter jejuni subsp. doylei 269.97	5388855
YP_001397372.1	CDS	JJD26997_0125	NC_009707.1	124276	125037	D	identified by match to protein family HMM PF01171; PP-loop family protein	124276..125037	Campylobacter jejuni subsp. doylei 269.97	5389775
YP_001397373.1	CDS	JJD26997_0126	NC_009707.1	125034	125555	D	putative pyrazinamidase/nicotinamidase	125034..125555	Campylobacter jejuni subsp. doylei 269.97	5388736
YP_001397374.1	CDS	JJD26997_0127	NC_009707.1	125555	126169	D	putative recombination protein RecO	125555..126169	Campylobacter jejuni subsp. doylei 269.97	5390502
YP_001397375.1	CDS	JJD26997_0128	NC_009707.1	126166	126573	D	identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; putative metalloprotease	126166..126573	Campylobacter jejuni subsp. doylei 269.97	5390150
YP_001397376.1	CDS	JJD26997_0129	NC_009707.1	126701	126814	R	peptidase family protein	complement(126701..126814)	Campylobacter jejuni subsp. doylei 269.97	5389758
YP_001397377.1	CDS	JJD26997_0130	NC_009707.1	127677	130250	D	identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; putative lipoprotein	127677..130250	Campylobacter jejuni subsp. doylei 269.97	5389669
YP_001397378.1	CDS	JJD26997_0131	NC_009707.1	130436	130591	R	identified by glimmer; putative; hypothetical protein	complement(130436..130591)	Campylobacter jejuni subsp. doylei 269.97	5390394
YP_001397379.1	CDS	JJD26997_0132	NC_009707.1	130619	131086	R	hypothetical protein	complement(130619..131086)	Campylobacter jejuni subsp. doylei 269.97	5389738
YP_001397380.1	CDS	JJD26997_0133	NC_009707.1	131136	131393	R	identified by glimmer; putative; hypothetical protein	complement(131136..131393)	Campylobacter jejuni subsp. doylei 269.97	5389846
YP_001397381.1	CDS	JJD26997_0134	NC_009707.1	131405	131584	R	identified by glimmer; putative; hypothetical protein	complement(131405..131584)	Campylobacter jejuni subsp. doylei 269.97	5389939
YP_001397382.1	CDS	dusB	NC_009707.1	131775	132701	R	identified by match to protein family HMM PF01207; tRNA-dihydrouridine synthase B	complement(131775..132701)	Campylobacter jejuni subsp. doylei 269.97	5389739
YP_001397383.1	CDS	JJD26997_0137	NC_009707.1	132698	133684	R	hypothetical protein	complement(132698..133684)	Campylobacter jejuni subsp. doylei 269.97	5390450
YP_001397384.1	CDS	JJD26997_0138	NC_009707.1	133674	134036	R	identified by match to protein family HMM PF01258; putative dnaK suppressor protein	complement(133674..134036)	Campylobacter jejuni subsp. doylei 269.97	5390020
YP_001397385.1	CDS	JJD26997_0139	NC_009707.1	134048	134497	R	identified by match to protein family HMM PF02590; hypothetical protein	complement(134048..134497)	Campylobacter jejuni subsp. doylei 269.97	5390448
YP_001397386.1	CDS	accD	NC_009707.1	134499	135341	R	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta	complement(134499..135341)	Campylobacter jejuni subsp. doylei 269.97	5389821
YP_001397387.1	CDS	JJD26997_0141	NC_009707.1	135350	136072	R	identified by match to protein family HMM PF00459; inositol monophosphatase family protein	complement(135350..136072)	Campylobacter jejuni subsp. doylei 269.97	5389189
YP_001397388.1	CDS	JJD26997_0142	NC_009707.1	136072	138291	R	identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303; OMP85 family outer membrane protein	complement(136072..138291)	Campylobacter jejuni subsp. doylei 269.97	5390167
YP_001397389.1	CDS	tyrA	NC_009707.1	138367	139194	D	catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase	138367..139194	Campylobacter jejuni subsp. doylei 269.97	5388966
YP_001397390.1	CDS	JJD26997_0144	NC_009707.1	139275	140648	D	identified by match to protein family HMM PF01551; M24/M37 family peptidase	139275..140648	Campylobacter jejuni subsp. doylei 269.97	5389011
YP_001397391.1	CDS	lpxC	NC_009707.1	140648	141532	D	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	140648..141532	Campylobacter jejuni subsp. doylei 269.97	5388744
YP_001397392.1	CDS	JJD26997_0146	NC_009707.1	141571	141972	D	hypothetical protein	141571..141972	Campylobacter jejuni subsp. doylei 269.97	5390181
YP_001397393.1	CDS	thrB	NC_009707.1	141981	142859	D	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase	141981..142859	Campylobacter jejuni subsp. doylei 269.97	5389706
YP_001397394.1	CDS	JJD26997_0148	NC_009707.1	142884	143141	D	hypothetical protein	142884..143141	Campylobacter jejuni subsp. doylei 269.97	5389317
YP_001397395.1	CDS	infB	NC_009707.1	143128	145692	D	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2	143128..145692	Campylobacter jejuni subsp. doylei 269.97	5389113
YP_001397396.1	CDS	rbfA	NC_009707.1	145689	146051	D	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A	145689..146051	Campylobacter jejuni subsp. doylei 269.97	5390436
YP_001397397.1	CDS	JJD26997_0151	NC_009707.1	146041	146463	D	identified by match to protein family HMM PF02576; hypothetical protein	146041..146463	Campylobacter jejuni subsp. doylei 269.97	5389062
YP_001397398.1	CDS	JJD26997_0152	NC_009707.1	146467	148263	D	identified by match to protein family HMM PF07728; putative McrBC restriction endonuclease system, McrB subunit	146467..148263	Campylobacter jejuni subsp. doylei 269.97	5388884
YP_001397399.1	CDS	JJD26997_0154	NC_009707.1	148263	149600	D	hypothetical protein	148263..149600	Campylobacter jejuni subsp. doylei 269.97	5388648
YP_001397400.1	CDS	JJD26997_0153	NC_009707.1	149589	150392	R	identified by match to protein family HMM PF00950; match to protein family HMM PF01032; cation ABC transporter permease	complement(149589..150392)	Campylobacter jejuni subsp. doylei 269.97	5390459
YP_001397401.1	CDS	JJD26997_0155	NC_009707.1	150385	151239	R	identified by match to protein family HMM PF00005; cation ABC transporter ATP-binding protein	complement(150385..151239)	Campylobacter jejuni subsp. doylei 269.97	5389523
YP_001397402.1	CDS	JJD26997_0156	NC_009707.1	151252	152127	R	identified by match to protein family HMM PF01297; cation ABC transporter periplasmic cation-binding protein	complement(151252..152127)	Campylobacter jejuni subsp. doylei 269.97	5389010
YP_001397403.1	CDS	JJD26997_0160	NC_009707.1	154434	156215	D	identified by match to protein family HMM PF05787; match to protein family HMM TIGR01409; hypothetical protein	154434..156215	Campylobacter jejuni subsp. doylei 269.97	5389198
YP_001397404.1	CDS	trxB	NC_009707.1	156253	157191	R	identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase	complement(156253..157191)	Campylobacter jejuni subsp. doylei 269.97	5388877
YP_001397405.1	CDS	trx	NC_009707.1	157325	157639	R	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin	complement(157325..157639)	Campylobacter jejuni subsp. doylei 269.97	5389440
YP_001397406.1	CDS	JJD26997_0163	NC_009707.1	157696	158034	R	identified by match to protein family HMM PF02021; hypothetical protein	complement(157696..158034)	Campylobacter jejuni subsp. doylei 269.97	5388612
YP_001397407.1	CDS	hom	NC_009707.1	158034	159281	R	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase	complement(158034..159281)	Campylobacter jejuni subsp. doylei 269.97	5389702
YP_001397408.1	CDS	JJD26997_0165	NC_009707.1	159285	160487	R	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase	complement(159285..160487)	Campylobacter jejuni subsp. doylei 269.97	5390607
YP_001397409.1	CDS	JJD26997_0166	NC_009707.1	160497	161303	R	hypothetical protein	complement(160497..161303)	Campylobacter jejuni subsp. doylei 269.97	5389268
YP_001397410.1	CDS	JJD26997_0167	NC_009707.1	161297	162235	R	hypothetical protein	complement(161297..162235)	Campylobacter jejuni subsp. doylei 269.97	5388999
YP_001397411.1	CDS	JJD26997_0168	NC_009707.1	162228	162911	R	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase	complement(162228..162911)	Campylobacter jejuni subsp. doylei 269.97	5388703
YP_001397412.1	CDS	JJD26997_0169	NC_009707.1	162925	163749	R	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase family protein	complement(162925..163749)	Campylobacter jejuni subsp. doylei 269.97	5389790
YP_001397413.1	CDS	rpmE	NC_009707.1	163755	163952	R	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31	complement(163755..163952)	Campylobacter jejuni subsp. doylei 269.97	5389832
YP_001397414.1	CDS	JJD26997_0171	NC_009707.1	164031	164687	R	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE	complement(164031..164687)	Campylobacter jejuni subsp. doylei 269.97	5389783
YP_001397415.1	CDS	JJD26997_0172	NC_009707.1	164689	165096	R	hypothetical protein	complement(164689..165096)	Campylobacter jejuni subsp. doylei 269.97	5389552
YP_001397416.1	CDS	JJD26997_0173	NC_009707.1	165096	165521	R	cytochrome c family protein	complement(165096..165521)	Campylobacter jejuni subsp. doylei 269.97	5389705
YP_001397417.1	CDS	JJD26997_0174	NC_009707.1	165521	166102	R	identified by match to protein family HMM TIGR03367; 6-pyruvoyl tetrahydrobiopterin synthase	complement(165521..166102)	Campylobacter jejuni subsp. doylei 269.97	5390488
YP_001397418.1	CDS	JJD26997_0175	NC_009707.1	166099	166842	R	identified by match to protein family HMM PF04055; radical SAM domain-containing protein	complement(166099..166842)	Campylobacter jejuni subsp. doylei 269.97	5388790
YP_001397419.1	CDS	moaA	NC_009707.1	166845	167807	R	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A	complement(166845..167807)	Campylobacter jejuni subsp. doylei 269.97	5388983
YP_001397420.1	CDS	JJD26997_0177	NC_009707.1	167820	168335	R	hypothetical protein	complement(167820..168335)	Campylobacter jejuni subsp. doylei 269.97	5388934
YP_001397421.1	CDS	JJD26997_0178	NC_009707.1	168332	168532	R	hypothetical protein	complement(168332..168532)	Campylobacter jejuni subsp. doylei 269.97	5388968
YP_001397422.1	CDS	ubiA	NC_009707.1	168820	169704	R	UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase	complement(168820..169704)	Campylobacter jejuni subsp. doylei 269.97	5389584
YP_001397423.1	CDS	miaA	NC_009707.1	169775	170644	D	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase	169775..170644	Campylobacter jejuni subsp. doylei 269.97	5390091
YP_001397424.1	CDS	JJD26997_0180	NC_009707.1	170630	171193	R	identified by match to protein family HMM PF02659; hypothetical protein	complement(170630..171193)	Campylobacter jejuni subsp. doylei 269.97	5390341
YP_001397425.1	CDS	sodB	NC_009707.1	171988	172650	D	identified by match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe	171988..172650	Campylobacter jejuni subsp. doylei 269.97	5390080
YP_001397426.1	CDS	JJD26997_0185	NC_009707.1	172719	173411	D	hypothetical protein	172719..173411	Campylobacter jejuni subsp. doylei 269.97	5389726
YP_001397427.1	CDS	JJD26997_0186	NC_009707.1	173425	174630	R	identified by match to protein family HMM PF03435; saccharopine dehydrogenase	complement(173425..174630)	Campylobacter jejuni subsp. doylei 269.97	5388961
YP_001397428.1	CDS	JJD26997_0187	NC_009707.1	174666	175574	R	identified by match to protein family HMM PF00005; iron ABC transporter ATP binding subunit	complement(174666..175574)	Campylobacter jejuni subsp. doylei 269.97	5389580
YP_001397429.1	CDS	JJD26997_0188	NC_009707.1	175558	177174	R	identified by match to protein family HMM PF00528; iron ABC transporter permease	complement(175558..177174)	Campylobacter jejuni subsp. doylei 269.97	5388870
YP_001397430.1	CDS	JJD26997_0189	NC_009707.1	177174	178178	R	identified by match to protein family HMM PF01547; iron ABC transporter periplasmic iron-binding protein	complement(177174..178178)	Campylobacter jejuni subsp. doylei 269.97	5389839
YP_001397431.1	CDS	JJD26997_0190	NC_009707.1	178496	179695	D	in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; putative transporter	178496..179695	Campylobacter jejuni subsp. doylei 269.97	5390089
YP_001397432.1	CDS	JJD26997_0191	NC_009707.1	179866	181152	D	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; putative transporter	179866..181152	Campylobacter jejuni subsp. doylei 269.97	5389710
YP_001397433.1	CDS	JJD26997_0195	NC_009707.1	182352	182561	R	identified by match to protein family HMM PF03831; PhnA domain-containing protein	complement(182352..182561)	Campylobacter jejuni subsp. doylei 269.97	5389009
YP_001397434.1	CDS	JJD26997_0196	NC_009707.1	182545	183273	R	identified by match to protein family HMM PF03741; TerC family integral membrane protein	complement(182545..183273)	Campylobacter jejuni subsp. doylei 269.97	5390061
YP_001397435.1	CDS	purN	NC_009707.1	183345	183911	R	identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase	complement(183345..183911)	Campylobacter jejuni subsp. doylei 269.97	5389802
YP_001397436.1	CDS	JJD26997_0198	NC_009707.1	183902	185272	R	identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; hypothetical protein	complement(183902..185272)	Campylobacter jejuni subsp. doylei 269.97	5389903
YP_001397437.1	CDS	JJD26997_0199	NC_009707.1	185256	185954	R	identified by match to protein family HMM PF01936; hypothetical protein	complement(185256..185954)	Campylobacter jejuni subsp. doylei 269.97	5389511
YP_001397438.1	CDS	JJD26997_0200	NC_009707.1	185956	187461	R	identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368; Mg chelatase-like protein	complement(185956..187461)	Campylobacter jejuni subsp. doylei 269.97	5389325
YP_001397439.1	CDS	def	NC_009707.1	187458	187985	R	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase	complement(187458..187985)	Campylobacter jejuni subsp. doylei 269.97	5389808
YP_001397440.1	CDS	clpP	NC_009707.1	188021	188605	R	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit	complement(188021..188605)	Campylobacter jejuni subsp. doylei 269.97	5390498
YP_001397441.1	CDS	folE	NC_009707.1	190082	190654	D	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I	190082..190654	Campylobacter jejuni subsp. doylei 269.97	5388622
YP_001397442.1	CDS	fliI	NC_009707.1	190654	192039	D	involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase	190654..192039	Campylobacter jejuni subsp. doylei 269.97	5389449
YP_001397443.1	CDS	purF	NC_009707.1	192042	193379	R	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase	complement(192042..193379)	Campylobacter jejuni subsp. doylei 269.97	5390168
YP_001397444.1	CDS	dapB	NC_009707.1	193364	194110	R	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase	complement(193364..194110)	Campylobacter jejuni subsp. doylei 269.97	5389928
YP_001397445.1	CDS	JJD26997_0208	NC_009707.1	194173	195354	R	identified by match to protein family HMM PF00004; recombination factor protein RarA	complement(194173..195354)	Campylobacter jejuni subsp. doylei 269.97	5389678
YP_001397446.1	CDS	JJD26997_0209	NC_009707.1	195354	196475	R	identified by glimmer; putative; hypothetical protein	complement(195354..196475)	Campylobacter jejuni subsp. doylei 269.97	5389788
YP_001397447.1	CDS	JJD26997_0210	NC_009707.1	196610	196957	R	hypothetical protein	complement(196610..196957)	Campylobacter jejuni subsp. doylei 269.97	5389299
YP_001397448.1	CDS	JJD26997_0214	NC_009707.1	198126	200120	D	identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733; OPT family oligopeptide transporter	198126..200120	Campylobacter jejuni subsp. doylei 269.97	5389489
YP_001397449.1	CDS	JJD26997_0215	NC_009707.1	200194	200997	D	identified by match to protein family HMM PF02673; match to protein family HMM TIGR00753; putative undecaprenol kinase	200194..200997	Campylobacter jejuni subsp. doylei 269.97	5388937
YP_001397450.1	CDS	thrS	NC_009707.1	201128	202936	D	catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase	201128..202936	Campylobacter jejuni subsp. doylei 269.97	5388923
YP_001397451.1	CDS	infC	NC_009707.1	202933	203451	D	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3	202933..203451	Campylobacter jejuni subsp. doylei 269.97	5390586
YP_001397452.1	CDS	JJD26997_0218	NC_009707.1	203490	204581	D	identified by match to protein family HMM PF02086; D12 class N6 adenine-specific DNA methyltransferase	203490..204581	Campylobacter jejuni subsp. doylei 269.97	5389473
YP_001397453.1	CDS	argC	NC_009707.1	208258	209286	D	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase	208258..209286	Campylobacter jejuni subsp. doylei 269.97	5389841
YP_001397454.1	CDS	JJD26997_0223	NC_009707.1	209296	209742	D	identified by match to protein family HMM PF00583; acetyltransferase	209296..209742	Campylobacter jejuni subsp. doylei 269.97	5389826
YP_001397455.1	CDS	argB	NC_009707.1	209752	210591	D	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase	209752..210591	Campylobacter jejuni subsp. doylei 269.97	5390346
YP_001397456.1	CDS	argD	NC_009707.1	210601	211782	D	identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine aminotransferase	210601..211782	Campylobacter jejuni subsp. doylei 269.97	5388675
YP_001397457.1	CDS	pcm	NC_009707.1	211801	212430	R	catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase	complement(211801..212430)	Campylobacter jejuni subsp. doylei 269.97	5390428
YP_001397458.1	CDS	JJD26997_0228	NC_009707.1	212519	213067	D	identified by match to protein family HMM PF00132; hexapaptide repeat-containing transferase	212519..213067	Campylobacter jejuni subsp. doylei 269.97	5390595
YP_001397459.1	CDS	JJD26997_0227	NC_009707.1	213036	214406	R	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase	complement(213036..214406)	Campylobacter jejuni subsp. doylei 269.97	5390285
YP_001397460.1	CDS	nrdF	NC_009707.1	214396	215418	R	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta	complement(214396..215418)	Campylobacter jejuni subsp. doylei 269.97	5390231
YP_001397461.1	CDS	JJD26997_0230	NC_009707.1	215432	215842	R	identified by match to protein family HMM PF06271; hypothetical protein	complement(215432..215842)	Campylobacter jejuni subsp. doylei 269.97	5390599
YP_001397462.1	CDS	pyrE	NC_009707.1	215843	216451	R	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase	complement(215843..216451)	Campylobacter jejuni subsp. doylei 269.97	5389920
YP_001397463.1	CDS	frr	NC_009707.1	216454	217011	R	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor	complement(216454..217011)	Campylobacter jejuni subsp. doylei 269.97	5389208
YP_001397464.1	CDS	secG	NC_009707.1	217027	217395	R	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG	complement(217027..217395)	Campylobacter jejuni subsp. doylei 269.97	5389054
YP_001397465.1	CDS	JJD26997_0234	NC_009707.1	217499	218194	R	identified by match to protein family HMM PF01027; hypothetical protein	complement(217499..218194)	Campylobacter jejuni subsp. doylei 269.97	5389036
YP_001397466.1	CDS	cynT	NC_009707.1	218354	218989	D	identified by match to protein family HMM PF00484; carbonic anhydrase	218354..218989	Campylobacter jejuni subsp. doylei 269.97	5388733
YP_001397467.1	CDS	JJD26997_0236	NC_009707.1	218986	220869	D	identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein	218986..220869	Campylobacter jejuni subsp. doylei 269.97	5388787
YP_001397468.1	CDS	JJD26997_0237	NC_009707.1	220893	221864	R	identified by match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; NifU family protein	complement(220893..221864)	Campylobacter jejuni subsp. doylei 269.97	5390487
YP_001397469.1	CDS	JJD26997_0238	NC_009707.1	221874	223055	R	identified by match to protein family HMM PF00266; match to protein family HMM TIGR03403; putative cysteine desulfurase	complement(221874..223055)	Campylobacter jejuni subsp. doylei 269.97	5390314
YP_001397470.1	CDS	JJD26997_0240	NC_009707.1	223767	224933	R	hypothetical protein	complement(223767..224933)	Campylobacter jejuni subsp. doylei 269.97	5389252
YP_001397471.1	CDS	rpmI	NC_009707.1	225095	225286	D	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35	225095..225286	Campylobacter jejuni subsp. doylei 269.97	5389013
YP_001397472.1	CDS	rplT	NC_009707.1	225380	225733	D	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20	225380..225733	Campylobacter jejuni subsp. doylei 269.97	5390349
YP_001397473.1	CDS	JJD26997_0247	NC_009707.1	227230	228087	D	identified by match to protein family HMM PF08668; hypothetical protein	227230..228087	Campylobacter jejuni subsp. doylei 269.97	5390240
YP_001397474.1	CDS	JJD26997_0249	NC_009707.1	228117	228593	D	identified by glimmer; putative; hypothetical protein	228117..228593	Campylobacter jejuni subsp. doylei 269.97	5390494
YP_001397475.1	CDS	JJD26997_0248	NC_009707.1	228562	229872	R	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein	complement(228562..229872)	Campylobacter jejuni subsp. doylei 269.97	5389611
YP_001397476.1	CDS	JJD26997_0250	NC_009707.1	229856	230032	R	identified by glimmer; putative; hypothetical protein	complement(229856..230032)	Campylobacter jejuni subsp. doylei 269.97	5390451
YP_001397477.1	CDS	moaC	NC_009707.1	230125	230598	D	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC	230125..230598	Campylobacter jejuni subsp. doylei 269.97	5389881
YP_001397478.1	CDS	JJD26997_0252	NC_009707.1	230576	230839	D	hypothetical protein	230576..230839	Campylobacter jejuni subsp. doylei 269.97	5389318
YP_001397479.1	CDS	JJD26997_0253	NC_009707.1	230853	231989	D	identified by glimmer; putative; hypothetical protein	230853..231989	Campylobacter jejuni subsp. doylei 269.97	5390416
YP_001397480.1	CDS	xth	NC_009707.1	232010	232789	R	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III	complement(232010..232789)	Campylobacter jejuni subsp. doylei 269.97	5389105
YP_001397481.1	CDS	JJD26997_0256	NC_009707.1	233470	234711	D	identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISHa1675 transposase B	233470..234711	Campylobacter jejuni subsp. doylei 269.97	5388866
YP_001397482.1	CDS	metC	NC_009707.1	237090	238253	R	identified by match to protein family HMM PF01053; cystathionine beta-lyase	complement(237090..238253)	Campylobacter jejuni subsp. doylei 269.97	5389954
YP_001397483.1	CDS	JJD26997_0262	NC_009707.1	239709	240071	R	identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; putative endoribonuclease L-PSP	complement(239709..240071)	Campylobacter jejuni subsp. doylei 269.97	5390200
YP_001397484.1	CDS	JJD26997_0263	NC_009707.1	240239	240895	D	identified by match to protein family HMM PF08348; hypothetical protein	240239..240895	Campylobacter jejuni subsp. doylei 269.97	5389243
YP_001397485.1	CDS	JJD26997_0264	NC_009707.1	240896	241366	R	identified by match to protein family HMM PF00023; ankyrin repeat-containing protein	complement(240896..241366)	Campylobacter jejuni subsp. doylei 269.97	5389158
YP_001397486.1	CDS	katA	NC_009707.1	241423	242847	R	identified by match to protein family HMM PF00199; catalase	complement(241423..242847)	Campylobacter jejuni subsp. doylei 269.97	5389428
YP_001397487.1	CDS	JJD26997_0266	NC_009707.1	243018	243332	D	hypothetical protein	243018..243332	Campylobacter jejuni subsp. doylei 269.97	5389298
YP_001397488.1	CDS	JJD26997_0267	NC_009707.1	243335	244030	D	identified by glimmer; putative; hypothetical protein	243335..244030	Campylobacter jejuni subsp. doylei 269.97	5388667
YP_001397489.1	CDS	fldA	NC_009707.1	244030	244521	D	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA	244030..244521	Campylobacter jejuni subsp. doylei 269.97	5389992
YP_001397490.1	CDS	JJD26997_0271	NC_009707.1	245097	245807	R	hypothetical protein	complement(245097..245807)	Campylobacter jejuni subsp. doylei 269.97	5389946
YP_001397491.1	CDS	selB	NC_009707.1	245856	247661	R	identified by match to protein family HMM PF00009; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific elongation factor	complement(245856..247661)	Campylobacter jejuni subsp. doylei 269.97	5389524
YP_001397492.1	CDS	selA	NC_009707.1	247658	248980	R	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase	complement(247658..248980)	Campylobacter jejuni subsp. doylei 269.97	5388721
YP_001397493.1	CDS	JJD26997_0275	NC_009707.1	249058	250731	D	identified by match to protein family HMM PF00037; iron-sulfur cluster-binding domain-containing protein	249058..250731	Campylobacter jejuni subsp. doylei 269.97	5389667
YP_001397494.1	CDS	JJD26997_0274	NC_009707.1	250728	252029	R	identified by match to protein family HMM PF07690; multidrug ABC transporter	complement(250728..252029)	Campylobacter jejuni subsp. doylei 269.97	5389418
YP_001397495.1	CDS	JJD26997_0276	NC_009707.1	252195	252797	D	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase	252195..252797	Campylobacter jejuni subsp. doylei 269.97	5389728
YP_001397496.1	CDS	JJD26997_0277	NC_009707.1	252829	255300	R	hypothetical protein	complement(252829..255300)	Campylobacter jejuni subsp. doylei 269.97	5389960
YP_001397497.1	CDS	JJD26997_0278	NC_009707.1	255300	255869	R	identified by match to protein family HMM PF05494; putative toluene tolerance protein	complement(255300..255869)	Campylobacter jejuni subsp. doylei 269.97	5389933
YP_001397498.1	CDS	JJD26997_0279	NC_009707.1	255869	256579	R	identified by match to protein family HMM PF04333; VacJ family lipoprotein	complement(255869..256579)	Campylobacter jejuni subsp. doylei 269.97	5390369
YP_001397499.1	CDS	JJD26997_0280	NC_009707.1	256624	257064	R	identified by match to protein family HMM PF00156; putative nucleotide phosphoribosyltransferase	complement(256624..257064)	Campylobacter jejuni subsp. doylei 269.97	5389729
YP_001397500.1	CDS	JJD26997_0281	NC_009707.1	257078	258397	R	identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease family protein	complement(257078..258397)	Campylobacter jejuni subsp. doylei 269.97	5390452
YP_001397501.1	CDS	JJD26997_0282	NC_009707.1	258406	259470	R	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; hypothetical protein	complement(258406..259470)	Campylobacter jejuni subsp. doylei 269.97	5389527
YP_001397502.1	CDS	JJD26997_0283	NC_009707.1	259599	261947	D	GlnD family protein	259599..261947	Campylobacter jejuni subsp. doylei 269.97	5390087
YP_001397503.1	CDS	glmS	NC_009707.1	261951	263747	D	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase	261951..263747	Campylobacter jejuni subsp. doylei 269.97	5390011
YP_001397504.1	CDS	fumC	NC_009707.1	263881	265272	D	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase	263881..265272	Campylobacter jejuni subsp. doylei 269.97	5390481
YP_001397505.1	CDS	JJD26997_0286	NC_009707.1	265302	266345	R	identified by match to protein family HMM PF01594; hypothetical protein	complement(265302..266345)	Campylobacter jejuni subsp. doylei 269.97	5389891
YP_001397506.1	CDS	ruvB	NC_009707.1	266349	267356	R	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB	complement(266349..267356)	Campylobacter jejuni subsp. doylei 269.97	5389465
YP_001397507.1	CDS	JJD26997_0288	NC_009707.1	267406	267858	D	hypothetical protein	267406..267858	Campylobacter jejuni subsp. doylei 269.97	5389002
YP_001397508.1	CDS	JJD26997_0292	NC_009707.1	268399	269601	D	identified by match to protein family HMM PF00589; phage integrase family site specific recombinase	268399..269601	Campylobacter jejuni subsp. doylei 269.97	5388826
YP_001397509.1	CDS	JJD26997_0291	NC_009707.1	269598	269768	R	DNA binding domain-containing protein	complement(269598..269768)	Campylobacter jejuni subsp. doylei 269.97	5389391
YP_001397510.1	CDS	JJD26997_0294	NC_009707.1	270291	270497	R	hypothetical protein	complement(270291..270497)	Campylobacter jejuni subsp. doylei 269.97	5390261
YP_001397511.1	CDS	JJD26997_0295	NC_009707.1	270533	271306	R	identified by glimmer; putative; hypothetical protein	complement(270533..271306)	Campylobacter jejuni subsp. doylei 269.97	5388581
YP_001397512.1	CDS	JJD26997_0296	NC_009707.1	271318	271500	R	identified by glimmer; putative; hypothetical protein	complement(271318..271500)	Campylobacter jejuni subsp. doylei 269.97	5389750
YP_001397513.1	CDS	JJD26997_0297	NC_009707.1	271524	271919	R	prophage Lp1 protein 30	complement(271524..271919)	Campylobacter jejuni subsp. doylei 269.97	5389231
YP_001397514.1	CDS	JJD26997_0298	NC_009707.1	271996	272157	R	identified by glimmer; putative; hypothetical protein	complement(271996..272157)	Campylobacter jejuni subsp. doylei 269.97	5389295
YP_001397515.1	CDS	JJD26997_0299	NC_009707.1	272570	272794	R	hypothetical protein	complement(272570..272794)	Campylobacter jejuni subsp. doylei 269.97	5389915
YP_001397516.1	CDS	JJD26997_0300	NC_009707.1	272796	273020	R	identified by glimmer; putative; hypothetical protein	complement(272796..273020)	Campylobacter jejuni subsp. doylei 269.97	5389543
YP_001397517.1	CDS	JJD26997_0301	NC_009707.1	273030	273407	R	hypothetical protein	complement(273030..273407)	Campylobacter jejuni subsp. doylei 269.97	5389711
YP_001397518.1	CDS	JJD26997_0302	NC_009707.1	273549	273809	R	hypothetical protein	complement(273549..273809)	Campylobacter jejuni subsp. doylei 269.97	5389430
YP_001397519.1	CDS	JJD26997_0303	NC_009707.1	273790	274479	R	identified by glimmer; putative; hypothetical protein	complement(273790..274479)	Campylobacter jejuni subsp. doylei 269.97	5389275
YP_001397520.1	CDS	JJD26997_0304	NC_009707.1	274479	275213	R	identified by glimmer; putative; hypothetical protein	complement(274479..275213)	Campylobacter jejuni subsp. doylei 269.97	5389225
YP_001397521.1	CDS	JJD26997_0305	NC_009707.1	275210	276070	R	hypothetical protein	complement(275210..276070)	Campylobacter jejuni subsp. doylei 269.97	5389239
YP_001397522.1	CDS	JJD26997_0306	NC_009707.1	276060	276803	R	identified by match to protein family HMM PF03374; DNA-binding protein Roi	complement(276060..276803)	Campylobacter jejuni subsp. doylei 269.97	5390531
YP_001397523.1	CDS	JJD26997_0307	NC_009707.1	276806	277486	R	identified by match to protein family HMM PF08346; putative phage anti-repressor protein	complement(276806..277486)	Campylobacter jejuni subsp. doylei 269.97	5390605
YP_001397524.1	CDS	JJD26997_0308	NC_009707.1	277632	277787	R	hypothetical protein	complement(277632..277787)	Campylobacter jejuni subsp. doylei 269.97	5388657
YP_001397525.1	CDS	JJD26997_0309	NC_009707.1	277798	278091	R	identified by glimmer; putative; hypothetical protein	complement(277798..278091)	Campylobacter jejuni subsp. doylei 269.97	5390482
YP_001397526.1	CDS	JJD26997_0310	NC_009707.1	278101	278955	R	hypothetical protein	complement(278101..278955)	Campylobacter jejuni subsp. doylei 269.97	5390161
YP_001397527.1	CDS	JJD26997_0311	NC_009707.1	278992	279252	R	hypothetical protein	complement(278992..279252)	Campylobacter jejuni subsp. doylei 269.97	5390236
YP_001397528.1	CDS	JJD26997_0312	NC_009707.1	279243	279512	R	hypothetical protein	complement(279243..279512)	Campylobacter jejuni subsp. doylei 269.97	5388745
YP_001397529.1	CDS	JJD26997_0313	NC_009707.1	279760	279930	R	identified by glimmer; putative; hypothetical protein	complement(279760..279930)	Campylobacter jejuni subsp. doylei 269.97	5389681
YP_001397530.1	CDS	JJD26997_0314	NC_009707.1	280342	280614	R	hypothetical protein	complement(280342..280614)	Campylobacter jejuni subsp. doylei 269.97	5388875
YP_001397531.1	CDS	JJD26997_0315	NC_009707.1	280765	280890	D	identified by glimmer; putative; hypothetical protein	280765..280890	Campylobacter jejuni subsp. doylei 269.97	5389648
YP_001397532.1	CDS	JJD26997_0316	NC_009707.1	281220	281954	R	identified by match to protein family HMM PF00717; putative phage repressor protein	complement(281220..281954)	Campylobacter jejuni subsp. doylei 269.97	5389583
YP_001397533.1	CDS	JJD26997_0317	NC_009707.1	282064	282282	D	identified by glimmer; putative; hypothetical protein	282064..282282	Campylobacter jejuni subsp. doylei 269.97	5389755
YP_001397534.1	CDS	JJD26997_0319	NC_009707.1	282279	282467	D	identified by glimmer; putative; hypothetical protein	282279..282467	Campylobacter jejuni subsp. doylei 269.97	5390016
YP_001397535.1	CDS	JJD26997_0318	NC_009707.1	282464	282613	R	identified by glimmer; putative; hypothetical protein	complement(282464..282613)	Campylobacter jejuni subsp. doylei 269.97	5390537
YP_001397536.1	CDS	JJD26997_0320	NC_009707.1	282768	283982	D	hypothetical protein	282768..283982	Campylobacter jejuni subsp. doylei 269.97	5390391
YP_001397537.1	CDS	JJD26997_0321	NC_009707.1	283994	284644	D	hypothetical protein	283994..284644	Campylobacter jejuni subsp. doylei 269.97	5389908
YP_001397538.1	CDS	JJD26997_0322	NC_009707.1	284715	285104	D	identified by match to protein family HMM PF05866; crossover junction endodeoxyribonuclease RusA superfamily protein	284715..285104	Campylobacter jejuni subsp. doylei 269.97	5389461
YP_001397539.1	CDS	JJD26997_0323	NC_009707.1	285097	285468	D	hypothetical protein	285097..285468	Campylobacter jejuni subsp. doylei 269.97	5389137
YP_001397540.1	CDS	JJD26997_0324	NC_009707.1	285465	286757	D	putative terminase B protein	285465..286757	Campylobacter jejuni subsp. doylei 269.97	5388851
YP_001397541.1	CDS	JJD26997_0325	NC_009707.1	286747	287019	D	hypothetical protein	286747..287019	Campylobacter jejuni subsp. doylei 269.97	5388979
YP_001397542.1	CDS	JJD26997_0326	NC_009707.1	287000	288523	D	identified by glimmer; putative; hypothetical protein	287000..288523	Campylobacter jejuni subsp. doylei 269.97	5388696
YP_001397543.1	CDS	JJD26997_0327	NC_009707.1	288510	288713	D	identified by glimmer; putative; hypothetical protein	288510..288713	Campylobacter jejuni subsp. doylei 269.97	5388856
YP_001397544.1	CDS	JJD26997_0328	NC_009707.1	288703	289347	D	identified by glimmer; putative; hypothetical protein	288703..289347	Campylobacter jejuni subsp. doylei 269.97	5389112
YP_001397545.1	CDS	JJD26997_0329	NC_009707.1	289358	289726	D	identified by glimmer; putative; hypothetical protein	289358..289726	Campylobacter jejuni subsp. doylei 269.97	5389012
YP_001397546.1	CDS	JJD26997_0332	NC_009707.1	290913	294578	D	hypothetical protein	290913..294578	Campylobacter jejuni subsp. doylei 269.97	5388623
YP_001397547.1	CDS	JJD26997_0333	NC_009707.1	294729	294857	R	identified by glimmer; putative; hypothetical protein	complement(294729..294857)	Campylobacter jejuni subsp. doylei 269.97	5388845
YP_001397548.1	CDS	JJD26997_0334	NC_009707.1	294811	294996	R	hypothetical protein	complement(294811..294996)	Campylobacter jejuni subsp. doylei 269.97	5389079
YP_001397549.1	CDS	JJD26997_0335	NC_009707.1	295491	296765	D	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; alpha-ketoglutarate permease	295491..296765	Campylobacter jejuni subsp. doylei 269.97	5388882
YP_001397550.1	CDS	ppk	NC_009707.1	297763	299847	R	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase	complement(297763..299847)	Campylobacter jejuni subsp. doylei 269.97	5389889
YP_001397551.1	CDS	nrfH	NC_009707.1	300035	300550	D	identified by match to protein family HMM PF03264; match to protein family HMM TIGR03153; cytochrome c-type protein nrfH	300035..300550	Campylobacter jejuni subsp. doylei 269.97	5389708
YP_001397552.1	CDS	nrfA	NC_009707.1	300565	302397	D	identified by match to protein family HMM PF02335; cytochrome c552	300565..302397	Campylobacter jejuni subsp. doylei 269.97	5390367
YP_001397553.1	CDS	JJD26997_0342	NC_009707.1	302534	303088	D	hypothetical protein	302534..303088	Campylobacter jejuni subsp. doylei 269.97	5390555
YP_001397554.1	CDS	JJD26997_0344	NC_009707.1	303242	304123	R	identified by match to protein family HMM PF00589; phage integrase	complement(303242..304123)	Campylobacter jejuni subsp. doylei 269.97	5389133
YP_001397555.1	CDS	JJD26997_0345	NC_009707.1	304113	305162	R	identified by match to protein family HMM PF05840; bacteriophage replication gene A protein	complement(304113..305162)	Campylobacter jejuni subsp. doylei 269.97	5389662
YP_001397556.1	CDS	JJD26997_0346	NC_009707.1	305393	305533	R	identified by glimmer; putative; hypothetical protein	complement(305393..305533)	Campylobacter jejuni subsp. doylei 269.97	5390000
YP_001397557.1	CDS	JJD26997_0347	NC_009707.1	305552	306727	R	identified by match to protein family HMM PF00263; type II and III secretion system protein	complement(305552..306727)	Campylobacter jejuni subsp. doylei 269.97	5390421
YP_001397558.1	CDS	JJD26997_0348	NC_009707.1	306690	307850	R	identified by glimmer; putative; hypothetical protein	complement(306690..307850)	Campylobacter jejuni subsp. doylei 269.97	5390427
YP_001397559.1	CDS	JJD26997_0349	NC_009707.1	307855	308283	R	identified by glimmer; putative; hypothetical protein	complement(307855..308283)	Campylobacter jejuni subsp. doylei 269.97	5390288
YP_001397560.1	CDS	JJD26997_0350	NC_009707.1	308286	310121	R	identified by glimmer; putative; hypothetical protein	complement(308286..310121)	Campylobacter jejuni subsp. doylei 269.97	5389810
YP_001397561.1	CDS	JJD26997_0351	NC_009707.1	310118	310246	R	identified by glimmer; putative; hypothetical protein	complement(310118..310246)	Campylobacter jejuni subsp. doylei 269.97	5388801
YP_001397562.1	CDS	JJD26997_0352	NC_009707.1	310609	310749	R	identified by glimmer; putative; hypothetical protein	complement(310609..310749)	Campylobacter jejuni subsp. doylei 269.97	5389098
YP_001397563.1	CDS	JJD26997_0353	NC_009707.1	310762	311001	R	identified by glimmer; putative; hypothetical protein	complement(310762..311001)	Campylobacter jejuni subsp. doylei 269.97	5389791
YP_001397564.1	CDS	JJD26997_0354	NC_009707.1	311105	311473	R	identified by glimmer; putative; hypothetical protein	complement(311105..311473)	Campylobacter jejuni subsp. doylei 269.97	5388829
YP_001397565.1	CDS	JJD26997_0355	NC_009707.1	311760	311993	D	cobaltochelatase subunit CobN	311760..311993	Campylobacter jejuni subsp. doylei 269.97	5389664
YP_001397566.1	CDS	JJD26997_0356	NC_009707.1	312084	312569	D	hypothetical protein	312084..312569	Campylobacter jejuni subsp. doylei 269.97	5389364
YP_001397567.1	CDS	JJD26997_0357	NC_009707.1	312601	312882	R	identified by match to protein family HMM PF05016; plasmid stabilization system protein	complement(312601..312882)	Campylobacter jejuni subsp. doylei 269.97	5388879
YP_001397568.1	CDS	JJD26997_0358	NC_009707.1	312882	313106	R	identified by glimmer; putative; hypothetical protein	complement(312882..313106)	Campylobacter jejuni subsp. doylei 269.97	5390399
YP_001397569.1	CDS	JJD26997_0360	NC_009707.1	314296	314871	R	putative molybdopterin-guanine dinucleotide biosynthesis protein	complement(314296..314871)	Campylobacter jejuni subsp. doylei 269.97	5388695
YP_001397570.1	CDS	JJD26997_0361	NC_009707.1	314933	316240	D	identified by match to protein family HMM PF05670; putative fibronectin/fibrinogen binding protein	314933..316240	Campylobacter jejuni subsp. doylei 269.97	5389373
YP_001397571.1	CDS	JJD26997_0362	NC_009707.1	316242	316577	D	identified by glimmer; putative; hypothetical protein	316242..316577	Campylobacter jejuni subsp. doylei 269.97	5390043
YP_001397572.1	CDS	cdsA	NC_009707.1	316587	317312	D	identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase	316587..317312	Campylobacter jejuni subsp. doylei 269.97	5388949
YP_001397573.1	CDS	dxr	NC_009707.1	317309	318379	D	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase	317309..318379	Campylobacter jejuni subsp. doylei 269.97	5390301
YP_001397574.1	CDS	JJD26997_0365	NC_009707.1	318381	319775	D	hypothetical protein	318381..319775	Campylobacter jejuni subsp. doylei 269.97	5388918
YP_001397575.1	CDS	gcp	NC_009707.1	319772	320779	D	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease	319772..320779	Campylobacter jejuni subsp. doylei 269.97	5390173
YP_001397576.1	CDS	ctsG	NC_009707.1	320780	321289	D	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; transformation system protein	320780..321289	Campylobacter jejuni subsp. doylei 269.97	5389503
YP_001397577.1	CDS	maf-6	NC_009707.1	322548	324365	D	identified by match to protein family HMM PF01973; motility accessory factor	322548..324365	Campylobacter jejuni subsp. doylei 269.97	5388942
YP_001397578.1	CDS	JJD26997_0371	NC_009707.1	324362	326179	D	identified by match to protein family HMM PF01973; motility accessory factor	324362..326179	Campylobacter jejuni subsp. doylei 269.97	5390504
YP_001397579.1	CDS	JJD26997_0372	NC_009707.1	326255	327976	D	FlaA; structural flagella protein; in Helicobacter the flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin	326255..327976	Campylobacter jejuni subsp. doylei 269.97	5389089
YP_001397580.1	CDS	maf-4	NC_009707.1	328007	329896	R	identified by match to protein family HMM PF01973; motility accessory factor	complement(328007..329896)	Campylobacter jejuni subsp. doylei 269.97	5390099
YP_001397581.1	CDS	maf-3	NC_009707.1	329893	331842	R	identified by match to protein family HMM PF01973; motility accessory factor	complement(329893..331842)	Campylobacter jejuni subsp. doylei 269.97	5388765
YP_001397582.1	CDS	maf-1	NC_009707.1	333705	335648	R	identified by match to protein family HMM PF01973; motility accessory factor	complement(333705..335648)	Campylobacter jejuni subsp. doylei 269.97	5389088
YP_001397583.1	CDS	ptmA	NC_009707.1	335636	336406	R	flagellin modification protein A	complement(335636..336406)	Campylobacter jejuni subsp. doylei 269.97	5389484
YP_001397584.1	CDS	ptmB	NC_009707.1	336406	337113	R	identified by match to protein family HMM PF02348; posttranslational flagellin modification protein B	complement(336406..337113)	Campylobacter jejuni subsp. doylei 269.97	5389686
YP_001397585.1	CDS	JJD26997_0379	NC_009707.1	337106	338011	R	identified by match to protein family HMM PF01408; hypothetical protein	complement(337106..338011)	Campylobacter jejuni subsp. doylei 269.97	5388880
YP_001397586.1	CDS	JJD26997_0380	NC_009707.1	338008	339033	R	identified by match to protein family HMM PF00483; match to protein family HMM PF00571; nucleotidyltransferase family protein	complement(338008..339033)	Campylobacter jejuni subsp. doylei 269.97	5389701
YP_001397587.1	CDS	JJD26997_0381	NC_009707.1	339042	340232	R	identified by match to protein family HMM PF02350; UDP-N-acetylglucosamine 2-epimerase	complement(339042..340232)	Campylobacter jejuni subsp. doylei 269.97	5389515
YP_001397588.1	CDS	JJD26997_0383	NC_009707.1	340880	341791	R	identified by match to protein family HMM PF00551; match to protein family HMM PF02911; methionyl-tRNA formyltransferase	complement(340880..341791)	Campylobacter jejuni subsp. doylei 269.97	5390048
YP_001397589.1	CDS	JJD26997_0384	NC_009707.1	341788	342975	R	identified by match to protein family HMM PF02350; UDP-N-acetylglucosamine 2-epimerase	complement(341788..342975)	Campylobacter jejuni subsp. doylei 269.97	5390516
YP_001397590.1	CDS	ptmC	NC_009707.1	342968	343972	R	identified by match to protein family HMM PF03102; match to protein family HMM PF08666; N-acetylneuraminic acid synthetase	complement(342968..343972)	Campylobacter jejuni subsp. doylei 269.97	5389747
YP_001397591.1	CDS	JJD26997_0390	NC_009707.1	345933	346961	R	hypothetical protein	complement(345933..346961)	Campylobacter jejuni subsp. doylei 269.97	5388925
YP_001397592.1	CDS	JJD26997_0391	NC_009707.1	347021	347689	R	identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase domain-containing protein	complement(347021..347689)	Campylobacter jejuni subsp. doylei 269.97	5389349
YP_001397593.1	CDS	JJD26997_0392	NC_009707.1	347686	348405	R	identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase domain-containing protein	complement(347686..348405)	Campylobacter jejuni subsp. doylei 269.97	5388694
YP_001397594.1	CDS	JJD26997_0393	NC_009707.1	348449	349591	R	identified by match to protein family HMM PF01041; aminotransferase	complement(348449..349591)	Campylobacter jejuni subsp. doylei 269.97	5389340
YP_001397595.1	CDS	JJD26997_0394	NC_009707.1	349584	350555	R	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein	complement(349584..350555)	Campylobacter jejuni subsp. doylei 269.97	5389121
YP_001397596.1	CDS	JJD26997_0397	NC_009707.1	352484	353515	R	identified by match to protein family HMM PF03102; match to protein family HMM PF08666; N-acetylneuraminic acid synthetase	complement(352484..353515)	Campylobacter jejuni subsp. doylei 269.97	5390508
YP_001397597.1	CDS	JJD26997_0398	NC_009707.1	353665	354801	D	flagellin modification protein, PseA	353665..354801	Campylobacter jejuni subsp. doylei 269.97	5390149
YP_001397598.1	CDS	hisH	NC_009707.1	354786	355403	D	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH	354786..355403	Campylobacter jejuni subsp. doylei 269.97	5389409
YP_001397599.1	CDS	hisF-1	NC_009707.1	355404	356150	D	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamide and glutamine to imidazole-glycerolphosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF	355404..356150	Campylobacter jejuni subsp. doylei 269.97	5389111
YP_001397600.1	CDS	JJD26997_0400	NC_009707.1	356115	356588	R	identified by match to protein family HMM PF00583; acetyltransferase	complement(356115..356588)	Campylobacter jejuni subsp. doylei 269.97	5390361
YP_001397601.1	CDS	JJD26997_0402	NC_009707.1	356585	357409	R	putative flagellar protein	complement(356585..357409)	Campylobacter jejuni subsp. doylei 269.97	5389935
YP_001397602.1	CDS	JJD26997_0404	NC_009707.1	358125	358799	R	putative flagellin modification protein FlmE	complement(358125..358799)	Campylobacter jejuni subsp. doylei 269.97	5390106
YP_001397603.1	CDS	JJD26997_0405	NC_009707.1	358812	359456	R	identified by glimmer; putative; hypothetical protein	complement(358812..359456)	Campylobacter jejuni subsp. doylei 269.97	5389276
YP_001397604.1	CDS	JJD26997_0406	NC_009707.1	359486	360178	R	identified by match to protein family HMM PF00483; match to protein family HMM PF02348; acylneuraminate cytidylyltransferase	complement(359486..360178)	Campylobacter jejuni subsp. doylei 269.97	5390097
YP_001397605.1	CDS	JJD26997_0407	NC_009707.1	360270	361502	D	hypothetical protein	360270..361502	Campylobacter jejuni subsp. doylei 269.97	5390295
YP_001397606.1	CDS	JJD26997_0410	NC_009707.1	362721	363935	D	hypothetical protein	362721..363935	Campylobacter jejuni subsp. doylei 269.97	5390495
YP_001397607.1	CDS	JJD26997_0412	NC_009707.1	363957	365027	D	hypothetical protein	363957..365027	Campylobacter jejuni subsp. doylei 269.97	5389668
YP_001397608.1	CDS	JJD26997_0411	NC_009707.1	365024	365251	R	putative acyl carrier protein	complement(365024..365251)	Campylobacter jejuni subsp. doylei 269.97	5389833
YP_001397609.1	CDS	JJD26997_0415	NC_009707.1	365965	367473	R	identified by match to protein family HMM PF00501; amino acid adenylation domain-containing protein	complement(365965..367473)	Campylobacter jejuni subsp. doylei 269.97	5388773
YP_001397610.1	CDS	JJD26997_0416	NC_009707.1	367534	368760	D	hypothetical protein	367534..368760	Campylobacter jejuni subsp. doylei 269.97	5390544
YP_001397611.1	CDS	JJD26997_0419	NC_009707.1	369999	370220	R	putative acyl carrier protein	complement(369999..370220)	Campylobacter jejuni subsp. doylei 269.97	5389984
YP_001397612.1	CDS	JJD26997_0420	NC_009707.1	370220	371281	R	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; paralogs which do not contain the N-X-R ACP-binding site motif; 3-oxoacyl-ACP synthase	complement(370220..371281)	Campylobacter jejuni subsp. doylei 269.97	5390554
YP_001397613.1	CDS	JJD26997_0421	NC_009707.1	371271	372833	R	identified by match to protein family HMM TIGR01681; match to protein family HMM TIGR01686; HAD family phosphatase	complement(371271..372833)	Campylobacter jejuni subsp. doylei 269.97	5390596
YP_001397614.1	CDS	JJD26997_0422	NC_009707.1	372830	373246	R	hypothetical protein	complement(372830..373246)	Campylobacter jejuni subsp. doylei 269.97	5389285
YP_001397615.1	CDS	JJD26997_0423	NC_009707.1	373239	374132	R	identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase domain-containing protein	complement(373239..374132)	Campylobacter jejuni subsp. doylei 269.97	5388837
YP_001397616.1	CDS	JJD26997_0424	NC_009707.1	374129	374359	R	acyl carrier protein	complement(374129..374359)	Campylobacter jejuni subsp. doylei 269.97	5389589
YP_001397617.1	CDS	JJD26997_0426	NC_009707.1	375201	375992	R	hypothetical protein	complement(375201..375992)	Campylobacter jejuni subsp. doylei 269.97	5390535
YP_001397618.1	CDS	JJD26997_0427	NC_009707.1	375989	377296	R	hypothetical protein	complement(375989..377296)	Campylobacter jejuni subsp. doylei 269.97	5390437
YP_001397619.1	CDS	JJD26997_0428	NC_009707.1	377289	378419	R	identified by match to protein family HMM PF01041; match to protein family HMM PF01212; aminotransferase	complement(377289..378419)	Campylobacter jejuni subsp. doylei 269.97	5389273
YP_001397620.1	CDS	flmA	NC_009707.1	378421	379425	R	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; polysaccharide biosynthesis protein	complement(378421..379425)	Campylobacter jejuni subsp. doylei 269.97	5389005
YP_001397621.1	CDS	dcd	NC_009707.1	379475	380035	R	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase	complement(379475..380035)	Campylobacter jejuni subsp. doylei 269.97	5388743
YP_001397622.1	CDS	accB	NC_009707.1	380180	380635	D	identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein	380180..380635	Campylobacter jejuni subsp. doylei 269.97	5389082
YP_001397623.1	CDS	accC-2	NC_009707.1	380637	381968	D	biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase	380637..381968	Campylobacter jejuni subsp. doylei 269.97	5390389
YP_001397624.1	CDS	JJD26997_0433	NC_009707.1	382003	382818	R	identified by match to protein family HMM PF09312; hypothetical protein	complement(382003..382818)	Campylobacter jejuni subsp. doylei 269.97	5389693
YP_001397625.1	CDS	gltX	NC_009707.1	382883	384274	D	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase	382883..384274	Campylobacter jejuni subsp. doylei 269.97	5389780
YP_001397626.1	CDS	JJD26997_0435	NC_009707.1	384276	385511	D	identified by match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme, truncation	384276..385511	Campylobacter jejuni subsp. doylei 269.97	5390120
YP_001397627.1	CDS	JJD26997_0440	NC_009707.1	386137	386808	D	identified by match to protein family HMM PF02621; hypothetical protein	386137..386808	Campylobacter jejuni subsp. doylei 269.97	5388682
YP_001397628.1	CDS	JJD26997_0439	NC_009707.1	386805	387455	R	identified by match to protein family HMM PF02080; match to protein family HMM PF02254; putative potassium uptake protein TrkA	complement(386805..387455)	Campylobacter jejuni subsp. doylei 269.97	5390351
YP_001397629.1	CDS	JJD26997_0441	NC_009707.1	387466	388809	R	identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; TrkH family potassium uptake protein	complement(387466..388809)	Campylobacter jejuni subsp. doylei 269.97	5390049
YP_001397630.1	CDS	JJD26997_0445	NC_009707.1	390441	391409	D	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase A	390441..391409	Campylobacter jejuni subsp. doylei 269.97	5388735
YP_001397631.1	CDS	JJD26997_0446	NC_009707.1	391357	392586	D	identified by match to protein family HMM PF00041; fibronectin type III domain-containing protein	391357..392586	Campylobacter jejuni subsp. doylei 269.97	5389957
YP_001397632.1	CDS	trmB	NC_009707.1	392586	393764	D	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase	392586..393764	Campylobacter jejuni subsp. doylei 269.97	5389147
YP_001397633.1	CDS	lolD	NC_009707.1	393826	394491	D	identified by match to protein family HMM PF00005; lipoprotein releasing system ATP-binding protein LolD	393826..394491	Campylobacter jejuni subsp. doylei 269.97	5389652
YP_001397634.1	CDS	JJD26997_0449	NC_009707.1	394517	395284	D	cell division protein FtsX	394517..395284	Campylobacter jejuni subsp. doylei 269.97	5388674
YP_001397635.1	CDS	JJD26997_0450	NC_009707.1	395281	396474	D	identified by match to protein family HMM PF01551; M24/M37 family peptidase	395281..396474	Campylobacter jejuni subsp. doylei 269.97	5388739
YP_001397636.1	CDS	pyrH	NC_009707.1	396526	397245	D	Catalyzes the phosphorylation of UMP to UDP; uridylate kinase	396526..397245	Campylobacter jejuni subsp. doylei 269.97	5390014
YP_001397637.1	CDS	rpoZ	NC_009707.1	397256	397480	D	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega	397256..397480	Campylobacter jejuni subsp. doylei 269.97	5388854
YP_001397638.1	CDS	JJD26997_0453	NC_009707.1	397488	399659	D	identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; RelA/SpoT family protein	397488..399659	Campylobacter jejuni subsp. doylei 269.97	5388628
YP_001397639.1	CDS	tyrS	NC_009707.1	399671	400876	D	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase	399671..400876	Campylobacter jejuni subsp. doylei 269.97	5389477
YP_001397640.1	CDS	JJD26997_0455	NC_009707.1	400873	401964	D	identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase	400873..401964	Campylobacter jejuni subsp. doylei 269.97	5389000
YP_001397641.1	CDS	JJD26997_0456	NC_009707.1	401964	403943	D	identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase	401964..403943	Campylobacter jejuni subsp. doylei 269.97	5390485
YP_001397642.1	CDS	mnmC	NC_009707.1	403940	405781	D	catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase	403940..405781	Campylobacter jejuni subsp. doylei 269.97	5388890
YP_001397643.1	CDS	hydA	NC_009707.1	405901	407040	D	identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; quinone-reactive Ni/Fe-hydrogenase, small subunit	405901..407040	Campylobacter jejuni subsp. doylei 269.97	5388831
YP_001397644.1	CDS	hydB	NC_009707.1	407043	408758	D	identified by match to protein family HMM PF00374; quinone-reactive Ni/Fe-hydrogenase, large subunit	407043..408758	Campylobacter jejuni subsp. doylei 269.97	5389929
YP_001397645.1	CDS	hydC	NC_009707.1	408745	409461	D	identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit	408745..409461	Campylobacter jejuni subsp. doylei 269.97	5389063
YP_001397646.1	CDS	hydD	NC_009707.1	409458	409994	D	identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; hydrogenase maturation protease HydD	409458..409994	Campylobacter jejuni subsp. doylei 269.97	5389549
YP_001397647.1	CDS	recR	NC_009707.1	409991	410563	R	involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR	complement(409991..410563)	Campylobacter jejuni subsp. doylei 269.97	5388662
YP_001397648.1	CDS	racS	NC_009707.1	410563	411729	R	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase	complement(410563..411729)	Campylobacter jejuni subsp. doylei 269.97	5390478
YP_001397649.1	CDS	racR	NC_009707.1	411795	412466	R	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator	complement(411795..412466)	Campylobacter jejuni subsp. doylei 269.97	5389676
YP_001397650.1	CDS	dnaJ-2	NC_009707.1	412620	413744	D	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ	412620..413744	Campylobacter jejuni subsp. doylei 269.97	5389346
YP_001397651.1	CDS	porA	NC_009707.1	413861	415183	R	identified by match to protein family HMM PF05538; major outer membrane protein	complement(413861..415183)	Campylobacter jejuni subsp. doylei 269.97	5389914
YP_001397652.1	CDS	JJD26997_0467	NC_009707.1	415435	415890	R	identified by match to protein family HMM PF01451; low molecular weight phosphotyrosine protein phosphatase family protein	complement(415435..415890)	Campylobacter jejuni subsp. doylei 269.97	5388914
YP_001397653.1	CDS	JJD26997_0468	NC_009707.1	415944	417128	D	identified by match to protein family HMM PF07690; multidrug resistance efflux transporter	415944..417128	Campylobacter jejuni subsp. doylei 269.97	5390453
YP_001397654.1	CDS	JJD26997_0470	NC_009707.1	417147	417809	D	hypothetical protein	417147..417809	Campylobacter jejuni subsp. doylei 269.97	5390095
YP_001397655.1	CDS	JJD26997_0469	NC_009707.1	417806	418015	R	identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013; hypothetical protein	complement(417806..418015)	Campylobacter jejuni subsp. doylei 269.97	5388740
YP_001397656.1	CDS	JJD26997_0471	NC_009707.1	418073	418555	R	identified by match to protein family HMM PF03167; hypothetical protein	complement(418073..418555)	Campylobacter jejuni subsp. doylei 269.97	5388689
YP_001397657.1	CDS	pnp	NC_009707.1	418552	420708	R	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase	complement(418552..420708)	Campylobacter jejuni subsp. doylei 269.97	5388770
YP_001397658.1	CDS	JJD26997_0473	NC_009707.1	420778	422805	R	identified by match to protein family HMM PF04453; putative organic solvent tolerance protein	complement(420778..422805)	Campylobacter jejuni subsp. doylei 269.97	5388951
YP_001397659.1	CDS	JJD26997_0474	NC_009707.1	422816	423268	R	identified by match to protein family HMM PF06271; hypothetical protein	complement(422816..423268)	Campylobacter jejuni subsp. doylei 269.97	5390070
YP_001397660.1	CDS	purD	NC_009707.1	423265	424515	R	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase	complement(423265..424515)	Campylobacter jejuni subsp. doylei 269.97	5389629
YP_001397661.1	CDS	JJD26997_0476	NC_009707.1	424754	426214	R	identified by glimmer; putative; hypothetical protein	complement(424754..426214)	Campylobacter jejuni subsp. doylei 269.97	5388817
YP_001397662.1	CDS	guaA	NC_009707.1	426300	427835	R	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase	complement(426300..427835)	Campylobacter jejuni subsp. doylei 269.97	5390587
YP_001397663.1	CDS	JJD26997_0478	NC_009707.1	427839	427970	R	identified by glimmer; putative; hypothetical protein	complement(427839..427970)	Campylobacter jejuni subsp. doylei 269.97	5388602
YP_001397664.1	CDS	JJD26997_0479	NC_009707.1	427974	428468	D	identified by glimmer; putative; hypothetical protein	427974..428468	Campylobacter jejuni subsp. doylei 269.97	5390218
YP_001397665.1	CDS	uvrC	NC_009707.1	428461	430263	D	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C	428461..430263	Campylobacter jejuni subsp. doylei 269.97	5389194
YP_001397666.1	CDS	JJD26997_0481	NC_009707.1	430265	431452	D	hypothetical protein	430265..431452	Campylobacter jejuni subsp. doylei 269.97	5389389
YP_001397667.1	CDS	JJD26997_0482	NC_009707.1	431457	432359	R	identified by match to protein family HMM PF04055; radical SAM domain-containing protein	complement(431457..432359)	Campylobacter jejuni subsp. doylei 269.97	5389761
YP_001397668.1	CDS	hemE	NC_009707.1	432356	433378	R	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase	complement(432356..433378)	Campylobacter jejuni subsp. doylei 269.97	5390573
YP_001397669.1	CDS	JJD26997_0485	NC_009707.1	433935	435134	R	identified by match to protein family HMM PF07690; putative transporter	complement(433935..435134)	Campylobacter jejuni subsp. doylei 269.97	5390456
YP_001397670.1	CDS	pdxA	NC_009707.1	435180	436277	R	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase	complement(435180..436277)	Campylobacter jejuni subsp. doylei 269.97	5390425
YP_001397671.1	CDS	pdxJ	NC_009707.1	436274	437047	R	involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase	complement(436274..437047)	Campylobacter jejuni subsp. doylei 269.97	5389123
YP_001397672.1	CDS	JJD26997_0489	NC_009707.1	437103	438077	D	identified by match to protein family HMM PF02541; Ppx/GppA family phosphatase	437103..438077	Campylobacter jejuni subsp. doylei 269.97	5389143
YP_001397673.1	CDS	JJD26997_0488	NC_009707.1	438074	439024	R	identified by match to protein family HMM PF02636; hypothetical protein	complement(438074..439024)	Campylobacter jejuni subsp. doylei 269.97	5390417
YP_001397674.1	CDS	JJD26997_0490	NC_009707.1	439021	439821	R	identified by match to protein family HMM PF01551; M24/M37 family peptidase	complement(439021..439821)	Campylobacter jejuni subsp. doylei 269.97	5390560
YP_001397675.1	CDS	glyS	NC_009707.1	439839	441833	R	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta	complement(439839..441833)	Campylobacter jejuni subsp. doylei 269.97	5388763
YP_001397676.1	CDS	JJD26997_0492	NC_009707.1	441889	442509	R	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD-superfamily hydrolase	complement(441889..442509)	Campylobacter jejuni subsp. doylei 269.97	5389171
YP_001397677.1	CDS	JJD26997_0493	NC_009707.1	442506	442838	R	identified by glimmer; putative; hypothetical protein	complement(442506..442838)	Campylobacter jejuni subsp. doylei 269.97	5388637
YP_001397678.1	CDS	JJD26997_0494	NC_009707.1	442848	444473	R	identified by match to protein family HMM PF00999; match to protein family HMM PF02254; sodium/hydrogen exchanger family protein	complement(442848..444473)	Campylobacter jejuni subsp. doylei 269.97	5390111
YP_001397679.1	CDS	JJD26997_0495	NC_009707.1	444480	444854	R	identified by match to protein family HMM PF00376; MerR family transcriptional regulator	complement(444480..444854)	Campylobacter jejuni subsp. doylei 269.97	5388598
YP_001397680.1	CDS	dnaJ-1	NC_009707.1	444870	445754	R	identified by match to protein family HMM PF00226; match to protein family HMM PF01556; co-chaperone protein DnaJ	complement(444870..445754)	Campylobacter jejuni subsp. doylei 269.97	5389460
YP_001397681.1	CDS	htrA	NC_009707.1	445955	447373	D	identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; protease DO	445955..447373	Campylobacter jejuni subsp. doylei 269.97	5389357
YP_001397682.1	CDS	JJD26997_0498	NC_009707.1	447449	448123	D	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator	447449..448123	Campylobacter jejuni subsp. doylei 269.97	5390042
YP_001397683.1	CDS	JJD26997_0499	NC_009707.1	448195	449367	D	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase	448195..449367	Campylobacter jejuni subsp. doylei 269.97	5388812
YP_001397684.1	CDS	JJD26997_0503	NC_009707.1	450312	450428	D	identified by glimmer; putative; hypothetical protein	450312..450428	Campylobacter jejuni subsp. doylei 269.97	5389514
YP_001397685.1	CDS	JJD26997_0504	NC_009707.1	450616	451281	D	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator	450616..451281	Campylobacter jejuni subsp. doylei 269.97	5390563
YP_001397686.1	CDS	JJD26997_0507	NC_009707.1	452680	452844	D	hypothetical protein	452680..452844	Campylobacter jejuni subsp. doylei 269.97	5388731
YP_001397687.1	CDS	JJD26997_0508	NC_009707.1	452931	453077	D	identified by glimmer; putative; hypothetical protein	452931..453077	Campylobacter jejuni subsp. doylei 269.97	5389990
YP_001397688.1	CDS	groEL	NC_009707.1	453112	454749	R	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL	complement(453112..454749)	Campylobacter jejuni subsp. doylei 269.97	5390215
YP_001397689.1	CDS	groES	NC_009707.1	454770	455030	R	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES	complement(454770..455030)	Campylobacter jejuni subsp. doylei 269.97	5389481
YP_001397690.1	CDS	JJD26997_0511	NC_009707.1	455193	457733	D	hypothetical protein	455193..457733	Campylobacter jejuni subsp. doylei 269.97	5389290
YP_001397691.1	CDS	ribE	NC_009707.1	457742	458353	D	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha	457742..458353	Campylobacter jejuni subsp. doylei 269.97	5390093
YP_001397692.1	CDS	JJD26997_0513	NC_009707.1	458317	458997	D	identified by match to protein family HMM PF02578; hypothetical protein	458317..458997	Campylobacter jejuni subsp. doylei 269.97	5390078
YP_001397693.1	CDS	JJD26997_0515	NC_009707.1	458999	459202	D	hypothetical protein	458999..459202	Campylobacter jejuni subsp. doylei 269.97	5390071
YP_001397694.1	CDS	JJD26997_0514	NC_009707.1	459199	460359	R	identified by match to protein family HMM PF01551; M24/M37 family peptidase	complement(459199..460359)	Campylobacter jejuni subsp. doylei 269.97	5389827
YP_001397695.1	CDS	JJD26997_0516	NC_009707.1	460481	461206	D	hypothetical protein	460481..461206	Campylobacter jejuni subsp. doylei 269.97	5390326
YP_001397696.1	CDS	glcD	NC_009707.1	461209	462591	D	identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD	461209..462591	Campylobacter jejuni subsp. doylei 269.97	5389323
YP_001397697.1	CDS	JJD26997_0518	NC_009707.1	462595	463425	D	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; YihY family protein	462595..463425	Campylobacter jejuni subsp. doylei 269.97	5388822
YP_001397698.1	CDS	JJD26997_0519	NC_009707.1	464604	465161	R	identified by match to protein family HMM PF09335; DedA family protein	complement(464604..465161)	Campylobacter jejuni subsp. doylei 269.97	5388676
YP_001397699.1	CDS	JJD26997_0520	NC_009707.1	465170	466723	R	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase	complement(465170..466723)	Campylobacter jejuni subsp. doylei 269.97	5389542
YP_001397700.1	CDS	JJD26997_0521	NC_009707.1	467353	467910	D	identified by match to protein family HMM PF00578; match to protein family HMM PF08534; putative lipoprotein	467353..467910	Campylobacter jejuni subsp. doylei 269.97	5388806
YP_001397701.1	CDS	ftsY	NC_009707.1	467910	468776	D	identified by match to protein family HMM PF00448; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY	467910..468776	Campylobacter jejuni subsp. doylei 269.97	5389847
YP_001397702.1	CDS	JJD26997_0523	NC_009707.1	468852	469010	D	identified by glimmer; putative; hypothetical protein	468852..469010	Campylobacter jejuni subsp. doylei 269.97	5389812
YP_001397703.1	CDS	radA	NC_009707.1	470792	472132	D	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA	470792..472132	Campylobacter jejuni subsp. doylei 269.97	5389450
YP_001397704.1	CDS	atpB	NC_009707.1	472202	472882	D	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A	472202..472882	Campylobacter jejuni subsp. doylei 269.97	5390473
YP_001397705.1	CDS	metF	NC_009707.1	473055	473903	R	identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase	complement(473055..473903)	Campylobacter jejuni subsp. doylei 269.97	5389399
YP_001397706.1	CDS	metE	NC_009707.1	473913	476177	R	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase	complement(473913..476177)	Campylobacter jejuni subsp. doylei 269.97	5390187
YP_001397707.1	CDS	JJD26997_0529	NC_009707.1	476200	476970	R	identified by match to protein family HMM PF03180; NLPA family lipoprotein	complement(476200..476970)	Campylobacter jejuni subsp. doylei 269.97	5388909
YP_001397708.1	CDS	JJD26997_0530	NC_009707.1	476980	477972	R	identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase	complement(476980..477972)	Campylobacter jejuni subsp. doylei 269.97	5388725
YP_001397709.1	CDS	luxS	NC_009707.1	478283	478777	R	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase	complement(478283..478777)	Campylobacter jejuni subsp. doylei 269.97	5390444
YP_001397710.1	CDS	gatB	NC_009707.1	478892	480310	D	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B	478892..480310	Campylobacter jejuni subsp. doylei 269.97	5388850
YP_001397711.1	CDS	gpsA	NC_009707.1	480310	481203	D	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	480310..481203	Campylobacter jejuni subsp. doylei 269.97	5388668
YP_001397712.1	CDS	JJD26997_0534	NC_009707.1	481213	482391	D	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase	481213..482391	Campylobacter jejuni subsp. doylei 269.97	5388853
YP_001397713.1	CDS	JJD26997_0535	NC_009707.1	482399	483925	R	identified by match to protein family HMM PF01384; phosphate transporter family protein	complement(482399..483925)	Campylobacter jejuni subsp. doylei 269.97	5389618
YP_001397714.1	CDS	dctA	NC_009707.1	484537	485835	R	identified by match to protein family HMM PF00375; C4-dicarboxylate transport protein	complement(484537..485835)	Campylobacter jejuni subsp. doylei 269.97	5389152
YP_001397715.1	CDS	JJD26997_0539	NC_009707.1	486795	488174	D	identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein	486795..488174	Campylobacter jejuni subsp. doylei 269.97	5389938
YP_001397716.1	CDS	JJD26997_0540	NC_009707.1	488192	488692	D	identified by match to protein family HMM PF08447; methyl-accepting chemotaxis protein	488192..488692	Campylobacter jejuni subsp. doylei 269.97	5388614
YP_001397717.1	CDS	gidA	NC_009707.1	488780	490639	D	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA	488780..490639	Campylobacter jejuni subsp. doylei 269.97	5390331
YP_001397718.1	CDS	petA	NC_009707.1	491086	491589	D	identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416; ubiquinol--cytochrome c reductase, iron-sulfur subunit	491086..491589	Campylobacter jejuni subsp. doylei 269.97	5389064
YP_001397719.1	CDS	petB	NC_009707.1	491591	492841	D	identified by match to protein family HMM PF00032; match to protein family HMM PF00033; ubiquinol--cytochrome c reductase, cytochrome b subunit	491591..492841	Campylobacter jejuni subsp. doylei 269.97	5389529
YP_001397720.1	CDS	petC	NC_009707.1	492838	493962	D	identified by match to protein family HMM PF00034; ubiquinol--cytochrome c reductase, cytochrome c1 subunit	492838..493962	Campylobacter jejuni subsp. doylei 269.97	5389746
YP_001397721.1	CDS	JJD26997_0546	NC_009707.1	494090	495253	D	identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242; cyclopropane-fatty-acyl-phospholipid synthase	494090..495253	Campylobacter jejuni subsp. doylei 269.97	5388679
YP_001397722.1	CDS	rpsB	NC_009707.1	495369	496160	D	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2	495369..496160	Campylobacter jejuni subsp. doylei 269.97	5388859
YP_001397723.1	CDS	tsf	NC_009707.1	496160	497233	D	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts	496160..497233	Campylobacter jejuni subsp. doylei 269.97	5390333
YP_001397724.1	CDS	JJD26997_0549	NC_009707.1	497246	497881	D	identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein	497246..497881	Campylobacter jejuni subsp. doylei 269.97	5389598
YP_001397725.1	CDS	fliR	NC_009707.1	497868	498635	D	FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR	497868..498635	Campylobacter jejuni subsp. doylei 269.97	5389504
YP_001397726.1	CDS	JJD26997_0551	NC_009707.1	498692	500002	D	hypothetical protein	498692..500002	Campylobacter jejuni subsp. doylei 269.97	5389370
YP_001397727.1	CDS	gmk	NC_009707.1	500005	500622	D	Essential for recycling GMP and indirectly, cGMP; guanylate kinase	500005..500622	Campylobacter jejuni subsp. doylei 269.97	5388706
YP_001397728.1	CDS	JJD26997_0553	NC_009707.1	500624	500863	D	identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin arginine-targeting protein translocase	500624..500863	Campylobacter jejuni subsp. doylei 269.97	5389049
YP_001397729.1	CDS	argS	NC_009707.1	500875	502467	D	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase	500875..502467	Campylobacter jejuni subsp. doylei 269.97	5389789
YP_001397730.1	CDS	JJD26997_0555	NC_009707.1	502485	502793	R	identified by match to protein family HMM PF00893; SMR family multidrug efflux pump	complement(502485..502793)	Campylobacter jejuni subsp. doylei 269.97	5390500
YP_001397731.1	CDS	JJD26997_0556	NC_009707.1	502793	503134	R	identified by match to protein family HMM PF00893; SMR family multidrug efflux pump	complement(502793..503134)	Campylobacter jejuni subsp. doylei 269.97	5389645
YP_001397732.1	CDS	JJD26997_0557	NC_009707.1	503244	503951	D	identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein	503244..503951	Campylobacter jejuni subsp. doylei 269.97	5389467
YP_001397733.1	CDS	ppiB	NC_009707.1	503961	504443	D	identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B	503961..504443	Campylobacter jejuni subsp. doylei 269.97	5389362
YP_001397734.1	CDS	JJD26997_0564	NC_009707.1	505997	506152	D	identified by glimmer; putative; hypothetical protein	505997..506152	Campylobacter jejuni subsp. doylei 269.97	5390435
YP_001397735.1	CDS	JJD26997_0565	NC_009707.1	506159	506941	R	identified by match to protein family HMM PF02866; L-lactate dehydrogenase	complement(506159..506941)	Campylobacter jejuni subsp. doylei 269.97	5389614
YP_001397736.1	CDS	JJD26997_0566	NC_009707.1	507374	507613	D	hypothetical protein	507374..507613	Campylobacter jejuni subsp. doylei 269.97	5388767
YP_001397737.1	CDS	JJD26997_0567	NC_009707.1	507709	508659	D	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein	507709..508659	Campylobacter jejuni subsp. doylei 269.97	5390316
YP_001397738.1	CDS	JJD26997_0568	NC_009707.1	508679	508843	D	identified by glimmer; putative; hypothetical protein	508679..508843	Campylobacter jejuni subsp. doylei 269.97	5388833
YP_001397739.1	CDS	JJD26997_0569	NC_009707.1	508843	510942	D	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; copper-translocating P-type ATPase	508843..510942	Campylobacter jejuni subsp. doylei 269.97	5389886
YP_001397740.1	CDS	dnaX	NC_009707.1	512970	514499	R	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau	complement(512970..514499)	Campylobacter jejuni subsp. doylei 269.97	5389563
YP_001397741.1	CDS	rho	NC_009707.1	514503	515801	R	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho	complement(514503..515801)	Campylobacter jejuni subsp. doylei 269.97	5390584
YP_001397742.1	CDS	JJD26997_0573	NC_009707.1	515916	518267	D	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; heavy metal translocating P-type ATPase	515916..518267	Campylobacter jejuni subsp. doylei 269.97	5390277
YP_001397743.1	CDS	JJD26997_0574	NC_009707.1	518264	518470	D	identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847; putative cytochrome oxidase maturation protein, cbb3-type	518264..518470	Campylobacter jejuni subsp. doylei 269.97	5389410
YP_001397744.1	CDS	cyf	NC_009707.1	518493	518795	R	identified by match to protein family HMM PF00034; cytochrome c553	complement(518493..518795)	Campylobacter jejuni subsp. doylei 269.97	5389900
YP_001397745.1	CDS	JJD26997_0576	NC_009707.1	518877	519434	D	identified by match to protein family HMM PF08645; match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; putative hydrolase	518877..519434	Campylobacter jejuni subsp. doylei 269.97	5389196
YP_001397746.1	CDS	waaD	NC_009707.1	519435	520388	D	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197; ADP-L-glycero-D-manno-heptose-6-epimerase	519435..520388	Campylobacter jejuni subsp. doylei 269.97	5388688
YP_001397747.1	CDS	hldE	NC_009707.1	520381	521766	D	identified by match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02198; match to protein family HMM TIGR02199; D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase	520381..521766	Campylobacter jejuni subsp. doylei 269.97	5388678
YP_001397748.1	CDS	gmhA-1	NC_009707.1	521763	522323	D	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase	521763..522323	Campylobacter jejuni subsp. doylei 269.97	5390424
YP_001397749.1	CDS	JJD26997_0581	NC_009707.1	522323	523087	D	identified by match to protein family HMM PF01755; putative lipooligosaccharide biosynthesis glycosyltransferase	522323..523087	Campylobacter jejuni subsp. doylei 269.97	5388964
YP_001397750.1	CDS	waaF	NC_009707.1	523073	524023	R	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195; ADP-heptose--LPS heptosyltransferase II	complement(523073..524023)	Campylobacter jejuni subsp. doylei 269.97	5389562
YP_001397751.1	CDS	JJD26997_0582	NC_009707.1	524081	524899	D	identified by match to protein family HMM PF00535; lipooligosaccharide biosynthesis glycosyltransferase	524081..524899	Campylobacter jejuni subsp. doylei 269.97	5388574
YP_001397752.1	CDS	JJD26997_0583	NC_009707.1	524939	526084	D	identified by match to protein family HMM PF01501; glycosyl transferase family protein	524939..526084	Campylobacter jejuni subsp. doylei 269.97	5389151
YP_001397753.1	CDS	JJD26997_0585	NC_009707.1	526111	526974	D	identified by match to protein family HMM PF00535; beta-1,3-galactosyltransferase	526111..526974	Campylobacter jejuni subsp. doylei 269.97	5388681
YP_001397754.1	CDS	JJD26997_0584	NC_009707.1	526971	528032	R	identified by match to protein family HMM PF00534; putative glycosyltransferase	complement(526971..528032)	Campylobacter jejuni subsp. doylei 269.97	5388663
YP_001397755.1	CDS	JJD26997_0586	NC_009707.1	528019	528792	R	identified by match to protein family HMM PF00535; hypothetical protein	complement(528019..528792)	Campylobacter jejuni subsp. doylei 269.97	5389822
YP_001397756.1	CDS	waaM	NC_009707.1	528789	529676	R	acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; essential for survival; plays a role in cell responses to environmental changes; lipid A biosynthesis lauroyl acyltransferase	complement(528789..529676)	Campylobacter jejuni subsp. doylei 269.97	5389371
YP_001397757.1	CDS	waaC	NC_009707.1	529666	530694	R	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193; lipopolysaccharide heptosyltransferase I	complement(529666..530694)	Campylobacter jejuni subsp. doylei 269.97	5389406
YP_001397758.1	CDS	wlaX	NC_009707.1	530757	531551	D	polysaccharide biosynthesis protein	530757..531551	Campylobacter jejuni subsp. doylei 269.97	5389700
YP_001397759.1	CDS	galE	NC_009707.1	531610	532596	D	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase	531610..532596	Campylobacter jejuni subsp. doylei 269.97	5388830
YP_001397760.1	CDS	wlaB	NC_009707.1	532590	534284	D	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease	532590..534284	Campylobacter jejuni subsp. doylei 269.97	5390183
YP_001397761.1	CDS	pglH	NC_009707.1	534281	535360	D	identified by match to protein family HMM PF00534; general glycosylation pathway protein	534281..535360	Campylobacter jejuni subsp. doylei 269.97	5390593
YP_001397762.1	CDS	pglI	NC_009707.1	535353	536282	D	identified by match to protein family HMM PF00535; general glycosylation pathway protein	535353..536282	Campylobacter jejuni subsp. doylei 269.97	5389139
YP_001397763.1	CDS	pglJ	NC_009707.1	536270	537367	D	identified by match to protein family HMM PF00534; general glycosylation pathway protein	536270..537367	Campylobacter jejuni subsp. doylei 269.97	5388580
YP_001397764.1	CDS	pglB	NC_009707.1	537371	539512	D	identified by match to protein family HMM PF02516; general glycosylation pathway protein	537371..539512	Campylobacter jejuni subsp. doylei 269.97	5390601
YP_001397765.1	CDS	pglA	NC_009707.1	539523	540653	D	identified by match to protein family HMM PF00534; general glycosylation pathway protein	539523..540653	Campylobacter jejuni subsp. doylei 269.97	5389309
YP_001397766.1	CDS	pglC	NC_009707.1	540646	541248	D	identified by match to protein family HMM PF02397; general glycosylation pathway protein	540646..541248	Campylobacter jejuni subsp. doylei 269.97	5389785
YP_001397767.1	CDS	pglD	NC_009707.1	541214	541825	D	general glycosylation pathway protein	541214..541825	Campylobacter jejuni subsp. doylei 269.97	5389538
YP_001397768.1	CDS	pglE	NC_009707.1	541922	543082	D	identified by match to protein family HMM PF01041; general glycosylation pathway protein	541922..543082	Campylobacter jejuni subsp. doylei 269.97	5390604
YP_001397769.1	CDS	pglG	NC_009707.1	544854	545747	D	general glycosylation pathway protein	544854..545747	Campylobacter jejuni subsp. doylei 269.97	5388629
YP_001397770.1	CDS	cheY	NC_009707.1	545860	546252	D	identified by match to protein family HMM PF00072; chemotaxis protein CheY	545860..546252	Campylobacter jejuni subsp. doylei 269.97	5390359
YP_001397771.1	CDS	prmA	NC_009707.1	546275	547123	D	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase	546275..547123	Campylobacter jejuni subsp. doylei 269.97	5389165
YP_001397772.1	CDS	ftsH	NC_009707.1	547123	549060	D	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; cell division protein FtsH	547123..549060	Campylobacter jejuni subsp. doylei 269.97	5390164
YP_001397773.1	CDS	JJD26997_0606	NC_009707.1	549057	549674	D	identified by match to protein family HMM PF02666; phosphatidylserine decarboxylase-related protein	549057..549674	Campylobacter jejuni subsp. doylei 269.97	5389368
YP_001397774.1	CDS	pssA	NC_009707.1	549684	550412	D	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase	549684..550412	Campylobacter jejuni subsp. doylei 269.97	5390609
YP_001397775.1	CDS	JJD26997_0607	NC_009707.1	550403	551200	R	identified by match to protein family HMM PF04305; hypothetical protein	complement(550403..551200)	Campylobacter jejuni subsp. doylei 269.97	5388716
YP_001397776.1	CDS	msrB	NC_009707.1	551290	551649	D	this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; a fusion protein of this enzyme with MsrA and thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; methionine sulfoxide reductase B	551290..551649	Campylobacter jejuni subsp. doylei 269.97	5389665
YP_001397777.1	CDS	JJD26997_0612	NC_009707.1	552345	553634	D	identified by match to protein family HMM PF00015; match to protein family HMM PF08447; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein	552345..553634	Campylobacter jejuni subsp. doylei 269.97	5388952
YP_001397778.1	CDS	aat	NC_009707.1	553657	554304	R	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase	complement(553657..554304)	Campylobacter jejuni subsp. doylei 269.97	5390530
YP_001397779.1	CDS	clpA	NC_009707.1	554279	556408	R	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639; ATP-dependent Clp protease, ATP-binding subunit ClpA	complement(554279..556408)	Campylobacter jejuni subsp. doylei 269.97	5389550
YP_001397780.1	CDS	JJD26997_0615	NC_009707.1	556405	556695	R	identified by match to protein family HMM PF02617; hypothetical protein	complement(556405..556695)	Campylobacter jejuni subsp. doylei 269.97	5390213
YP_001397781.1	CDS	JJD26997_0616	NC_009707.1	556695	557297	R	thioredoxin domain-containing protein	complement(556695..557297)	Campylobacter jejuni subsp. doylei 269.97	5389560
YP_001397782.1	CDS	smpB	NC_009707.1	557309	557761	R	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein	complement(557309..557761)	Campylobacter jejuni subsp. doylei 269.97	5390493
YP_001397783.1	CDS	ispE	NC_009707.1	557758	558525	R	catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	complement(557758..558525)	Campylobacter jejuni subsp. doylei 269.97	5389382
YP_001397784.1	CDS	csrA	NC_009707.1	558522	558749	R	identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator	complement(558522..558749)	Campylobacter jejuni subsp. doylei 269.97	5390021
YP_001397785.1	CDS	truB	NC_009707.1	558743	559561	R	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B	complement(558743..559561)	Campylobacter jejuni subsp. doylei 269.97	5390031
YP_001397786.1	CDS	JJD26997_0621	NC_009707.1	559558	561633	R	identified by match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD	complement(559558..561633)	Campylobacter jejuni subsp. doylei 269.97	5389983
YP_001397787.1	CDS	JJD26997_0622	NC_009707.1	561630	562025	R	hypothetical protein	complement(561630..562025)	Campylobacter jejuni subsp. doylei 269.97	5389432
YP_001397788.1	CDS	pepF	NC_009707.1	562061	563782	R	identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR02290; oligoendopeptidase F	complement(562061..563782)	Campylobacter jejuni subsp. doylei 269.97	5390499
YP_001397789.1	CDS	pyrB	NC_009707.1	563786	564673	R	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit	complement(563786..564673)	Campylobacter jejuni subsp. doylei 269.97	5388785
YP_001397790.1	CDS	JJD26997_0625	NC_009707.1	564683	565906	R	involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT	complement(564683..565906)	Campylobacter jejuni subsp. doylei 269.97	5389135
YP_001397791.1	CDS	metK	NC_009707.1	566046	567242	D	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase	566046..567242	Campylobacter jejuni subsp. doylei 269.97	5390339
YP_001397792.1	CDS	lnt	NC_009707.1	569271	570536	R	Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase	complement(569271..570536)	Campylobacter jejuni subsp. doylei 269.97	5389842
YP_001397793.1	CDS	yajC	NC_009707.1	570560	570832	D	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC	570560..570832	Campylobacter jejuni subsp. doylei 269.97	5388720
YP_001397794.1	CDS	secD	NC_009707.1	570825	572405	D	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD	570825..572405	Campylobacter jejuni subsp. doylei 269.97	5390009
YP_001397795.1	CDS	secF	NC_009707.1	572405	573376	D	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF	572405..573376	Campylobacter jejuni subsp. doylei 269.97	5389395
YP_001397796.1	CDS	leuS	NC_009707.1	573386	575815	D	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase	573386..575815	Campylobacter jejuni subsp. doylei 269.97	5390226
YP_001397797.1	CDS	JJD26997_0633	NC_009707.1	575980	576324	D	putative lipoprotein	575980..576324	Campylobacter jejuni subsp. doylei 269.97	5389263
YP_001397798.1	CDS	folC	NC_009707.1	577683	578855	D	identified by match to protein family HMM PF08245; match to protein family HMM TIGR01499; folC bifunctional protein	577683..578855	Campylobacter jejuni subsp. doylei 269.97	5390318
YP_001397799.1	CDS	JJD26997_0637	NC_009707.1	579680	580075	D	identified by match to protein family HMM PF04519; hypothetical protein	579680..580075	Campylobacter jejuni subsp. doylei 269.97	5389934
YP_001397800.1	CDS	mfd	NC_009707.1	580075	583011	D	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580; transcription-repair coupling factor	580075..583011	Campylobacter jejuni subsp. doylei 269.97	5388919
YP_001397801.1	CDS	JJD26997_0639	NC_009707.1	583013	583774	D	identified by match to protein family HMM PF05673; hypothetical protein	583013..583774	Campylobacter jejuni subsp. doylei 269.97	5388687
YP_001397802.1	CDS	JJD26997_0640	NC_009707.1	583771	584457	D	identified by match to protein family HMM PF00730; putative endonuclease III	583771..584457	Campylobacter jejuni subsp. doylei 269.97	5389869
YP_001397803.1	CDS	thiD	NC_009707.1	584454	585266	D	identified by match to protein family HMM PF01256; match to protein family HMM PF08543; match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase	584454..585266	Campylobacter jejuni subsp. doylei 269.97	5389666
YP_001397804.1	CDS	hemD	NC_009707.1	585866	586495	D	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase	585866..586495	Campylobacter jejuni subsp. doylei 269.97	5389997
YP_001397805.1	CDS	JJD26997_0643	NC_009707.1	586492	586944	R	hypothetical protein	complement(586492..586944)	Campylobacter jejuni subsp. doylei 269.97	5389331
YP_001397806.1	CDS	JJD26997_0645	NC_009707.1	586941	587603	R	identified by glimmer; putative; hypothetical protein	complement(586941..587603)	Campylobacter jejuni subsp. doylei 269.97	5389986
YP_001397807.1	CDS	ctsT	NC_009707.1	587600	587860	R	transformation system protein	complement(587600..587860)	Campylobacter jejuni subsp. doylei 269.97	5389144
YP_001397808.1	CDS	proC	NC_009707.1	587899	588630	R	catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase	complement(587899..588630)	Campylobacter jejuni subsp. doylei 269.97	5389344
YP_001397809.1	CDS	JJD26997_0648	NC_009707.1	588630	589019	R	binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW	complement(588630..589019)	Campylobacter jejuni subsp. doylei 269.97	5390110
YP_001397810.1	CDS	JJD26997_0649	NC_009707.1	589180	589827	D	putative lipoprotein	589180..589827	Campylobacter jejuni subsp. doylei 269.97	5390466
YP_001397811.1	CDS	lon	NC_009707.1	589844	592219	D	identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La	589844..592219	Campylobacter jejuni subsp. doylei 269.97	5389131
YP_001397812.1	CDS	rpsR	NC_009707.1	592281	592541	R	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18	complement(592281..592541)	Campylobacter jejuni subsp. doylei 269.97	5390460
YP_001397813.1	CDS	ssb	NC_009707.1	592552	593103	R	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein	complement(592552..593103)	Campylobacter jejuni subsp. doylei 269.97	5389310
YP_001397814.1	CDS	rpsF	NC_009707.1	593112	593489	R	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6	complement(593112..593489)	Campylobacter jejuni subsp. doylei 269.97	5390549
YP_001397815.1	CDS	JJD26997_0654	NC_009707.1	593576	594436	R	identified by match to protein family HMM PF04393; hypothetical protein	complement(593576..594436)	Campylobacter jejuni subsp. doylei 269.97	5389397
YP_001397816.1	CDS	JJD26997_0655	NC_009707.1	594429	595535	R	identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; putative membrane-associated zinc metalloprotease	complement(594429..595535)	Campylobacter jejuni subsp. doylei 269.97	5388583
YP_001397817.1	CDS	pgsA	NC_009707.1	595532	596068	R	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	complement(595532..596068)	Campylobacter jejuni subsp. doylei 269.97	5388956
YP_001397818.1	CDS	JJD26997_0657	NC_009707.1	596110	596715	R	identified by match to protein family HMM PF00881; nitroreductase family protein	complement(596110..596715)	Campylobacter jejuni subsp. doylei 269.97	5390174
YP_001397819.1	CDS	JJD26997_0661	NC_009707.1	597834	598922	R	identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage-inducible domain-containing protein	complement(597834..598922)	Campylobacter jejuni subsp. doylei 269.97	5389288
YP_001397820.1	CDS	ileS	NC_009707.1	599018	601771	D	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase	599018..601771	Campylobacter jejuni subsp. doylei 269.97	5389689
YP_001397821.1	CDS	gatA	NC_009707.1	601872	603233	D	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A	601872..603233	Campylobacter jejuni subsp. doylei 269.97	5389159
YP_001397822.1	CDS	guaB	NC_009707.1	603243	604700	D	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase	603243..604700	Campylobacter jejuni subsp. doylei 269.97	5388896
YP_001397823.1	CDS	JJD26997_0665	NC_009707.1	604697	604870	D	putative exodeoxyribonuclease VII, small subunit	604697..604870	Campylobacter jejuni subsp. doylei 269.97	5388768
YP_001397824.1	CDS	JJD26997_0666	NC_009707.1	604863	605639	D	carbon-nitrogen family hydrolase	604863..605639	Campylobacter jejuni subsp. doylei 269.97	5389043
YP_001397825.1	CDS	JJD26997_0671	NC_009707.1	607881	608720	D	identified by match to protein family HMM PF00795; carbon-nitrogen hydrolase	607881..608720	Campylobacter jejuni subsp. doylei 269.97	5389564
YP_001397826.1	CDS	JJD26997_0672	NC_009707.1	608737	609618	D	identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein	608737..609618	Campylobacter jejuni subsp. doylei 269.97	5390202
YP_001397827.1	CDS	JJD26997_0673	NC_009707.1	609746	610075	D	hypothetical protein	609746..610075	Campylobacter jejuni subsp. doylei 269.97	5389830
YP_001397828.1	CDS	JJD26997_0674	NC_009707.1	610068	611135	D	identified by match to protein family HMM PF02492; match to protein family HMM PF07683; ATP/GTP binding protein	610068..611135	Campylobacter jejuni subsp. doylei 269.97	5389250
YP_001397829.1	CDS	JJD26997_0675	NC_009707.1	612015	612137	D	identified by glimmer; putative; hypothetical protein	612015..612137	Campylobacter jejuni subsp. doylei 269.97	5390074
YP_001397830.1	CDS	JJD26997_0676	NC_009707.1	612402	613862	R	identified by match to protein family HMM PF02133; NCS1 nucleoside transporter	complement(612402..613862)	Campylobacter jejuni subsp. doylei 269.97	5389697
YP_001397831.1	CDS	JJD26997_0677	NC_009707.1	614221	614883	R	identified by match to protein family HMM PF04199; cyclase superfamily protein	complement(614221..614883)	Campylobacter jejuni subsp. doylei 269.97	5388660
YP_001397832.1	CDS	JJD26997_0679	NC_009707.1	615970	616347	R	putative chemotaxis signal transduction protein	complement(615970..616347)	Campylobacter jejuni subsp. doylei 269.97	5389955
YP_001397833.1	CDS	murC	NC_009707.1	617024	618319	D	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase	617024..618319	Campylobacter jejuni subsp. doylei 269.97	5389390
YP_001397834.1	CDS	JJD26997_0681	NC_009707.1	618312	618662	D	hypothetical protein	618312..618662	Campylobacter jejuni subsp. doylei 269.97	5390289
YP_001397835.1	CDS	mutS	NC_009707.1	618655	620862	D	MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein	618655..620862	Campylobacter jejuni subsp. doylei 269.97	5388895
YP_001397836.1	CDS	JJD26997_0682	NC_009707.1	620857	621843	R	hypothetical protein	complement(620857..621843)	Campylobacter jejuni subsp. doylei 269.97	5389912
YP_001397837.1	CDS	JJD26997_0686	NC_009707.1	622868	623401	D	identified by match to protein family HMM PF02146; NAD-dependent deacetylase	622868..623401	Campylobacter jejuni subsp. doylei 269.97	5389712
YP_001397838.1	CDS	JJD26997_0687	NC_009707.1	623394	623993	D	identified by match to protein family HMM PF01810; amino acid transporter LysE	623394..623993	Campylobacter jejuni subsp. doylei 269.97	5388669
YP_001397839.1	CDS	dapE	NC_009707.1	623997	625094	D	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase	623997..625094	Campylobacter jejuni subsp. doylei 269.97	5388751
YP_001397840.1	CDS	JJD26997_0689	NC_009707.1	625104	627167	D	identified by match to protein family HMM PF02384; DNA methylase-type I restriction-modification system	625104..627167	Campylobacter jejuni subsp. doylei 269.97	5388788
YP_001397841.1	CDS	JJD26997_0690	NC_009707.1	627172	627897	D	RlfA	627172..627897	Campylobacter jejuni subsp. doylei 269.97	5388887
YP_001397842.1	CDS	JJD26997_0691	NC_009707.1	627897	628448	D	hypothetical protein	627897..628448	Campylobacter jejuni subsp. doylei 269.97	5388886
YP_001397843.1	CDS	JJD26997_0692	NC_009707.1	628515	628805	R	identified by glimmer; putative; hypothetical protein	complement(628515..628805)	Campylobacter jejuni subsp. doylei 269.97	5389570
YP_001397844.1	CDS	JJD26997_0693	NC_009707.1	628927	629526	R	identified by match to protein family HMM PF00565; thermonuclease family protein	complement(628927..629526)	Campylobacter jejuni subsp. doylei 269.97	5389683
YP_001397845.1	CDS	JJD26997_0694	NC_009707.1	629553	629792	R	hypothetical protein	complement(629553..629792)	Campylobacter jejuni subsp. doylei 269.97	5389759
YP_001397846.1	CDS	JJD26997_0695	NC_009707.1	630023	630166	R	identified by glimmer; putative; hypothetical protein	complement(630023..630166)	Campylobacter jejuni subsp. doylei 269.97	5390132
YP_001397847.1	CDS	JJD26997_0696	NC_009707.1	630163	630759	R	hypothetical protein	complement(630163..630759)	Campylobacter jejuni subsp. doylei 269.97	5388576
YP_001397848.1	CDS	JJD26997_0697	NC_009707.1	630886	631200	R	transketolase	complement(630886..631200)	Campylobacter jejuni subsp. doylei 269.97	5390348
YP_001397849.1	CDS	JJD26997_0704	NC_009707.1	633293	633835	R	identified by match to protein family HMM PF00908; dTDP-4-dehydrorhamnose 3,5-epimerase	complement(633293..633835)	Campylobacter jejuni subsp. doylei 269.97	5389361
YP_001397850.1	CDS	JJD26997_0705	NC_009707.1	633887	634939	R	identified by match to protein family HMM PF01370; GDP-fucose synthetase	complement(633887..634939)	Campylobacter jejuni subsp. doylei 269.97	5389029
YP_001397851.1	CDS	JJD26997_0706	NC_009707.1	634932	636044	R	identified by match to protein family HMM PF01370; GDP-fucose synthetase	complement(634932..636044)	Campylobacter jejuni subsp. doylei 269.97	5389947
YP_001397852.1	CDS	JJD26997_0709	NC_009707.1	636962	637495	R	identified by match to protein family HMM PF00908; putative nucleotidyl-sugar epimerase	complement(636962..637495)	Campylobacter jejuni subsp. doylei 269.97	5390572
YP_001397853.1	CDS	JJD26997_0710	NC_009707.1	637495	638706	R	identified by match to protein family HMM PF01041; WbdK	complement(637495..638706)	Campylobacter jejuni subsp. doylei 269.97	5388808
YP_001397854.1	CDS	JJD26997_0711	NC_009707.1	638785	640278	R	identified by match to protein family HMM PF01501; glycosyl transferase family protein	complement(638785..640278)	Campylobacter jejuni subsp. doylei 269.97	5389319
YP_001397855.1	CDS	JJD26997_0712	NC_009707.1	640280	641854	R	putative capsular polysaccharide biosynthesis protein	complement(640280..641854)	Campylobacter jejuni subsp. doylei 269.97	5389161
YP_001397856.1	CDS	JJD26997_0713	NC_009707.1	641851	643593	R	putative sugar transferase	complement(641851..643593)	Campylobacter jejuni subsp. doylei 269.97	5389922
YP_001397857.1	CDS	JJD26997_0714	NC_009707.1	643594	644169	R	identified by glimmer; putative; hypothetical protein	complement(643594..644169)	Campylobacter jejuni subsp. doylei 269.97	5390512
YP_001397858.1	CDS	JJD26997_0715	NC_009707.1	644163	645623	R	identified by match to protein family HMM PF00535; galactosyltransferase	complement(644163..645623)	Campylobacter jejuni subsp. doylei 269.97	5389126
YP_001397859.1	CDS	JJD26997_0716	NC_009707.1	645620	646966	R	identified by match to protein family HMM PF00535; putative sugar transferase	complement(645620..646966)	Campylobacter jejuni subsp. doylei 269.97	5390521
YP_001397860.1	CDS	glf	NC_009707.1	646968	648065	R	identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031; UDP-galactopyranose mutase	complement(646968..648065)	Campylobacter jejuni subsp. doylei 269.97	5389923
YP_001397861.1	CDS	JJD26997_0718	NC_009707.1	648093	649448	R	identified by match to protein family HMM PF00535; putative sugar transferase	complement(648093..649448)	Campylobacter jejuni subsp. doylei 269.97	5388943
YP_001397862.1	CDS	JJD26997_0719	NC_009707.1	649445	650440	R	identified by match to protein family HMM PF00535; putative sugar transferase	complement(649445..650440)	Campylobacter jejuni subsp. doylei 269.97	5390364
YP_001397863.1	CDS	JJD26997_0720	NC_009707.1	650518	651102	D	identified by match to protein family HMM PF01205; Xaa-Pro dipeptidase	650518..651102	Campylobacter jejuni subsp. doylei 269.97	5389081
YP_001397864.1	CDS	JJD26997_0721	NC_009707.1	651204	653231	D	hypothetical protein	651204..653231	Campylobacter jejuni subsp. doylei 269.97	5388865
YP_001397865.1	CDS	JJD26997_0722	NC_009707.1	653228	653938	D	identified by match to protein family HMM PF02348; putative acylneuraminate cytidylyltransferase	653228..653938	Campylobacter jejuni subsp. doylei 269.97	5389707
YP_001397866.1	CDS	JJD26997_0723	NC_009707.1	654002	654445	D	identified by glimmer; putative; hypothetical protein	654002..654445	Campylobacter jejuni subsp. doylei 269.97	5389106
YP_001397867.1	CDS	JJD26997_0724	NC_009707.1	654415	655470	D	identified by glimmer; putative; hypothetical protein	654415..655470	Campylobacter jejuni subsp. doylei 269.97	5390219
YP_001397868.1	CDS	JJD26997_0725	NC_009707.1	655471	656604	D	identified by match to protein family HMM PF00156; putative glutamine amidophosphoribosyltransferase	655471..656604	Campylobacter jejuni subsp. doylei 269.97	5388997
YP_001397869.1	CDS	JJD26997_0726	NC_009707.1	656684	657235	D	identified by glimmer; putative; hypothetical protein	656684..657235	Campylobacter jejuni subsp. doylei 269.97	5389965
YP_001397870.1	CDS	JJD26997_0727	NC_009707.1	657232	658224	D	identified by match to protein family HMM PF00682; hypothetical protein	657232..658224	Campylobacter jejuni subsp. doylei 269.97	5390475
YP_001397871.1	CDS	JJD26997_0728	NC_009707.1	658266	658508	R	hypothetical protein	complement(658266..658508)	Campylobacter jejuni subsp. doylei 269.97	5389617
YP_001397872.1	CDS	JJD26997_0732	NC_009707.1	660249	660611	R	identified by glimmer; putative; hypothetical protein	complement(660249..660611)	Campylobacter jejuni subsp. doylei 269.97	5389166
YP_001397873.1	CDS	JJD26997_0733	NC_009707.1	660597	660929	D	putative DNA methylase-type I restriction-modification system	660597..660929	Campylobacter jejuni subsp. doylei 269.97	5390017
YP_001397874.1	CDS	thiS	NC_009707.1	660926	661117	D	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS	660926..661117	Campylobacter jejuni subsp. doylei 269.97	5389843
YP_001397875.1	CDS	thiF	NC_009707.1	661114	661917	D	catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF	661114..661917	Campylobacter jejuni subsp. doylei 269.97	5389179
YP_001397876.1	CDS	thiG	NC_009707.1	661920	662696	D	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase	661920..662696	Campylobacter jejuni subsp. doylei 269.97	5389375
YP_001397877.1	CDS	thiH	NC_009707.1	662699	663844	D	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH	662699..663844	Campylobacter jejuni subsp. doylei 269.97	5390506
YP_001397878.1	CDS	JJD26997_0738	NC_009707.1	663834	664445	D	identified by match to protein family HMM PF02581; putative thiamine-phosphate pyrophosphorylase	663834..664445	Campylobacter jejuni subsp. doylei 269.97	5390038
YP_001397879.1	CDS	murG	NC_009707.1	665571	666599	R	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	complement(665571..666599)	Campylobacter jejuni subsp. doylei 269.97	5390063
YP_001397880.1	CDS	JJD26997_0744	NC_009707.1	666596	667759	R	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; cell cycle protein FtsW	complement(666596..667759)	Campylobacter jejuni subsp. doylei 269.97	5389385
YP_001397881.1	CDS	accC-1	NC_009707.1	667899	669344	D	biotin carboxylase; catalyses the carboxylation of the carrier protein which then transfers the carboxyl group to form malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase subunit A	667899..669344	Campylobacter jejuni subsp. doylei 269.97	5389209
YP_001397882.1	CDS	JJD26997_0746	NC_009707.1	669348	669560	D	hypothetical protein	669348..669560	Campylobacter jejuni subsp. doylei 269.97	5389356
YP_001397883.1	CDS	JJD26997_0747	NC_009707.1	669560	670279	D	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase	669560..670279	Campylobacter jejuni subsp. doylei 269.97	5390052
YP_001397884.1	CDS	JJD26997_0748	NC_009707.1	670280	671086	D	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase	670280..671086	Campylobacter jejuni subsp. doylei 269.97	5389058
YP_001397885.1	CDS	JJD26997_0749	NC_009707.1	671109	674126	R	identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein	complement(671109..674126)	Campylobacter jejuni subsp. doylei 269.97	5390565
YP_001397886.1	CDS	JJD26997_0750	NC_009707.1	674129	674869	R	hypothetical protein	complement(674129..674869)	Campylobacter jejuni subsp. doylei 269.97	5389975
YP_001397887.1	CDS	JJD26997_0751	NC_009707.1	674866	676125	R	identified by match to protein family HMM PF02321; putative outer membrane component of efflux system	complement(674866..676125)	Campylobacter jejuni subsp. doylei 269.97	5388939
YP_001397888.1	CDS	JJD26997_0752	NC_009707.1	676173	678215	R	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane ferric hydroxamate receptor FhuA	complement(676173..678215)	Campylobacter jejuni subsp. doylei 269.97	5389437
YP_001397889.1	CDS	JJD26997_0753	NC_009707.1	678395	679159	D	identified by match to protein family HMM PF00005; ferrichrome transport ATP-binding protein FhuC	678395..679159	Campylobacter jejuni subsp. doylei 269.97	5389308
YP_001397890.1	CDS	JJD26997_0754	NC_009707.1	679161	679985	D	identified by match to protein family HMM PF01497; FecB protein	679161..679985	Campylobacter jejuni subsp. doylei 269.97	5389480
YP_001397891.1	CDS	lepA	NC_009707.1	682651	684441	D	binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA	682651..684441	Campylobacter jejuni subsp. doylei 269.97	5388588
YP_001397892.1	CDS	mapA	NC_009707.1	684518	685162	D	membrane liproprotein MapA	684518..685162	Campylobacter jejuni subsp. doylei 269.97	5389246
YP_001397893.1	CDS	ctsW	NC_009707.1	685159	685734	D	transformation system protein	685159..685734	Campylobacter jejuni subsp. doylei 269.97	5389590
YP_001397894.1	CDS	gyrA	NC_009707.1	685775	688363	D	negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A	685775..688363	Campylobacter jejuni subsp. doylei 269.97	5389941
YP_001397895.1	CDS	JJD26997_0762	NC_009707.1	688431	688946	D	identified by match to protein family HMM PF04164; putative lipoprotein	688431..688946	Campylobacter jejuni subsp. doylei 269.97	5390480
YP_001397896.1	CDS	JJD26997_0763	NC_009707.1	689054	689371	D	identified by glimmer; putative; hypothetical protein	689054..689371	Campylobacter jejuni subsp. doylei 269.97	5389674
YP_001397897.1	CDS	JJD26997_0764	NC_009707.1	689429	690730	D	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; sigma-54 dependent DNA-binding response regulator	689429..690730	Campylobacter jejuni subsp. doylei 269.97	5389048
YP_001397898.1	CDS	asd	NC_009707.1	690730	691761	D	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase	690730..691761	Campylobacter jejuni subsp. doylei 269.97	5388809
YP_001397899.1	CDS	JJD26997_0766	NC_009707.1	691770	692276	D	identified by match to protein family HMM PF03350; hypothetical protein	691770..692276	Campylobacter jejuni subsp. doylei 269.97	5390287
YP_001397900.1	CDS	JJD26997_0767	NC_009707.1	692328	692519	D	porin domain-containing protein	692328..692519	Campylobacter jejuni subsp. doylei 269.97	5388898
YP_001397901.1	CDS	JJD26997_0768	NC_009707.1	692528	692962	D	cytochrome c family protein	692528..692962	Campylobacter jejuni subsp. doylei 269.97	5390036
YP_001397902.1	CDS	JJD26997_0769	NC_009707.1	692993	694108	D	identified by match to protein family HMM PF01094; high affinity branched-chain amino acid ABC transporter periplasmic amino acid-binding protein	692993..694108	Campylobacter jejuni subsp. doylei 269.97	5389953
YP_001397903.1	CDS	JJD26997_0770	NC_009707.1	694130	695239	D	identified by match to protein family HMM PF01094; high affinity branched-chain amino acid ABC transporter periplasmic amino acid-binding protein	694130..695239	Campylobacter jejuni subsp. doylei 269.97	5388718
YP_001397904.1	CDS	livH	NC_009707.1	695259	696155	D	identified by match to protein family HMM PF02653; high affinity branched-chain amino acid ABC transporter permease	695259..696155	Campylobacter jejuni subsp. doylei 269.97	5389444
YP_001397905.1	CDS	livM	NC_009707.1	696155	697207	D	identified by match to protein family HMM PF02653; high affinity branched-chain amino acid ABC transporter permease	696155..697207	Campylobacter jejuni subsp. doylei 269.97	5390439
YP_001397906.1	CDS	livG	NC_009707.1	697204	697974	D	identified by match to protein family HMM PF00005; high affinity branched-chain amino acid ABC transporter ATP-binding protein	697204..697974	Campylobacter jejuni subsp. doylei 269.97	5388752
YP_001397907.1	CDS	livF	NC_009707.1	697958	698656	D	identified by match to protein family HMM PF00005; high affinity branched-chain amino acid ABC transporter ATP-binding protein	697958..698656	Campylobacter jejuni subsp. doylei 269.97	5389205
YP_001397908.1	CDS	JJD26997_0775	NC_009707.1	698674	701919	D	identified by match to protein family HMM PF01578; CcmF/CcyK/CcsA family cytochrome c biogenesis protein	698674..701919	Campylobacter jejuni subsp. doylei 269.97	5389878
YP_001397909.1	CDS	JJD26997_0776	NC_009707.1	701920	702384	D	hypothetical protein	701920..702384	Campylobacter jejuni subsp. doylei 269.97	5388610
YP_001397910.1	CDS	JJD26997_0778	NC_009707.1	702516	703283	R	hypothetical protein	complement(702516..703283)	Campylobacter jejuni subsp. doylei 269.97	5389092
YP_001397911.1	CDS	tgt	NC_009707.1	703285	704406	R	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase	complement(703285..704406)	Campylobacter jejuni subsp. doylei 269.97	5390184
YP_001397912.1	CDS	JJD26997_0780	NC_009707.1	704436	705836	D	identified by match to protein family HMM PF02080; TrkA domain-containing protein	704436..705836	Campylobacter jejuni subsp. doylei 269.97	5388647
YP_001397913.1	CDS	aroB	NC_009707.1	705882	706937	D	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase	705882..706937	Campylobacter jejuni subsp. doylei 269.97	5389874
YP_001397914.1	CDS	JJD26997_0782	NC_009707.1	706934	708505	D	identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein	706934..708505	Campylobacter jejuni subsp. doylei 269.97	5390252
YP_001397915.1	CDS	JJD26997_0783	NC_009707.1	708502	709752	D	identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; MiaB-like tRNA modifying enzyme	708502..709752	Campylobacter jejuni subsp. doylei 269.97	5389642
YP_001397916.1	CDS	JJD26997_0784	NC_009707.1	709756	711372	D	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; cell division protein FtsH	709756..711372	Campylobacter jejuni subsp. doylei 269.97	5390571
YP_001397917.1	CDS	JJD26997_0785	NC_009707.1	711380	711796	R	hypothetical protein	complement(711380..711796)	Campylobacter jejuni subsp. doylei 269.97	5389659
YP_001397918.1	CDS	JJD26997_0786	NC_009707.1	711894	712412	D	identified by match to protein family HMM PF01694; rhomboid family protein	711894..712412	Campylobacter jejuni subsp. doylei 269.97	5388867
YP_001397919.1	CDS	sixA	NC_009707.1	712409	712921	D	identified by match to protein family HMM PF00300; phosphohistidine phosphatase SixA	712409..712921	Campylobacter jejuni subsp. doylei 269.97	5389704
YP_001397920.1	CDS	rpoD	NC_009707.1	712936	714804	R	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD	complement(712936..714804)	Campylobacter jejuni subsp. doylei 269.97	5389627
YP_001397921.1	CDS	JJD26997_0791	NC_009707.1	715364	715936	D	hypothetical protein	715364..715936	Campylobacter jejuni subsp. doylei 269.97	5389455
YP_001397922.1	CDS	gidB	NC_009707.1	715952	716518	R	identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138; methyltransferase GidB	complement(715952..716518)	Campylobacter jejuni subsp. doylei 269.97	5389592
YP_001397923.1	CDS	ribA	NC_009707.1	716519	717079	R	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II	complement(716519..717079)	Campylobacter jejuni subsp. doylei 269.97	5388844
YP_001397924.1	CDS	hemB	NC_009707.1	717137	718120	D	catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase	717137..718120	Campylobacter jejuni subsp. doylei 269.97	5389952
YP_001397925.1	CDS	argF	NC_009707.1	718117	719037	D	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase	718117..719037	Campylobacter jejuni subsp. doylei 269.97	5389784
YP_001397926.1	CDS	JJD26997_0796	NC_009707.1	719034	719525	D	hypothetical protein	719034..719525	Campylobacter jejuni subsp. doylei 269.97	5389502
YP_001397927.1	CDS	hemN	NC_009707.1	719512	720867	D	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase	719512..720867	Campylobacter jejuni subsp. doylei 269.97	5388604
YP_001397928.1	CDS	JJD26997_0798	NC_009707.1	720869	722134	D	identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur cluster-binding domain-containing protein	720869..722134	Campylobacter jejuni subsp. doylei 269.97	5390355
YP_001397929.1	CDS	JJD26997_0799	NC_009707.1	722144	722341	R	hypothetical protein	complement(722144..722341)	Campylobacter jejuni subsp. doylei 269.97	5388577
YP_001397930.1	CDS	JJD26997_0800	NC_009707.1	722485	724014	D	identified by match to protein family HMM PF03806; putative efflux pump component MtrF	722485..724014	Campylobacter jejuni subsp. doylei 269.97	5389068
YP_001397931.1	CDS	pepT	NC_009707.1	724018	725238	D	catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T	724018..725238	Campylobacter jejuni subsp. doylei 269.97	5389722
YP_001397932.1	CDS	hipO	NC_009707.1	726541	727692	D	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; hippurate hydrolase	726541..727692	Campylobacter jejuni subsp. doylei 269.97	5388832
YP_001397933.1	CDS	JJD26997_0804	NC_009707.1	727696	728436	R	identified by match to protein family HMM PF03883; hypothetical protein	complement(727696..728436)	Campylobacter jejuni subsp. doylei 269.97	5389837
YP_001397934.1	CDS	jlpA	NC_009707.1	728528	729646	R	surface-exposed lipoprotein	complement(728528..729646)	Campylobacter jejuni subsp. doylei 269.97	5388922
YP_001397935.1	CDS	cjaA	NC_009707.1	729866	730705	D	identified by match to protein family HMM PF00497; CjaA protein	729866..730705	Campylobacter jejuni subsp. doylei 269.97	5389930
YP_001397936.1	CDS	JJD26997_0807	NC_009707.1	730745	730876	D	identified by glimmer; putative; hypothetical protein	730745..730876	Campylobacter jejuni subsp. doylei 269.97	5389120
YP_001397937.1	CDS	pepD	NC_009707.1	731964	733232	R	aminoacyl-histidine dipeptidase	complement(731964..733232)	Campylobacter jejuni subsp. doylei 269.97	5389861
YP_001397938.1	CDS	JJD26997_0811	NC_009707.1	733300	733827	D	identified by match to protein family HMM PF00565; thermonuclease family protein	733300..733827	Campylobacter jejuni subsp. doylei 269.97	5390548
YP_001397939.1	CDS	JJD26997_0812	NC_009707.1	733836	734009	D	putative lipoprotein	733836..734009	Campylobacter jejuni subsp. doylei 269.97	5388712
YP_001397940.1	CDS	JJD26997_0813	NC_009707.1	734010	734588	R	hypothetical protein	complement(734010..734588)	Campylobacter jejuni subsp. doylei 269.97	5389494
YP_001397941.1	CDS	JJD26997_0814	NC_009707.1	734661	735536	R	identified by match to protein family HMM PF08003; match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase	complement(734661..735536)	Campylobacter jejuni subsp. doylei 269.97	5390464
YP_001397942.1	CDS	JJD26997_0815	NC_009707.1	736139	736369	R	identified by glimmer; putative; hypothetical protein	complement(736139..736369)	Campylobacter jejuni subsp. doylei 269.97	5390505
YP_001397943.1	CDS	JJD26997_0817	NC_009707.1	736990	737364	D	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase family protein	736990..737364	Campylobacter jejuni subsp. doylei 269.97	5388651
YP_001397944.1	CDS	JJD26997_0816	NC_009707.1	737356	738507	R	hypothetical protein	complement(737356..738507)	Campylobacter jejuni subsp. doylei 269.97	5388611
YP_001397945.1	CDS	JJD26997_0818	NC_009707.1	738543	739121	R	hypothetical protein	complement(738543..739121)	Campylobacter jejuni subsp. doylei 269.97	5389970
YP_001397946.1	CDS	JJD26997_0819	NC_009707.1	739148	739627	R	identified by match to protein family HMM PF00583; acetyltransferase	complement(739148..739627)	Campylobacter jejuni subsp. doylei 269.97	5389411
YP_001397947.1	CDS	rpmH	NC_009707.1	739758	739892	D	in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34	739758..739892	Campylobacter jejuni subsp. doylei 269.97	5390243
YP_001397948.1	CDS	rnpA	NC_009707.1	739889	740215	D	identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component	739889..740215	Campylobacter jejuni subsp. doylei 269.97	5390237
YP_001397949.1	CDS	JJD26997_0822	NC_009707.1	740212	740553	D	identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein	740212..740553	Campylobacter jejuni subsp. doylei 269.97	5390497
YP_001397950.1	CDS	JJD26997_0823	NC_009707.1	740550	742142	D	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC	740550..742142	Campylobacter jejuni subsp. doylei 269.97	5389656
YP_001397951.1	CDS	JJD26997_0824	NC_009707.1	742139	742957	D	hypothetical protein	742139..742957	Campylobacter jejuni subsp. doylei 269.97	5389893
YP_001397952.1	CDS	trmE	NC_009707.1	742950	744278	D	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE	742950..744278	Campylobacter jejuni subsp. doylei 269.97	5389641
YP_001397953.1	CDS	purL	NC_009707.1	744289	746475	D	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II	744289..746475	Campylobacter jejuni subsp. doylei 269.97	5389774
YP_001397954.1	CDS	JJD26997_0827	NC_009707.1	746604	747242	D	identified by match to protein family HMM PF00226; DnaJ domain-containing protein	746604..747242	Campylobacter jejuni subsp. doylei 269.97	5389217
YP_001397955.1	CDS	purH	NC_009707.1	747245	748777	D	involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	747245..748777	Campylobacter jejuni subsp. doylei 269.97	5390115
YP_001397956.1	CDS	JJD26997_0831	NC_009707.1	750400	750666	R	identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; hypothetical protein	complement(750400..750666)	Campylobacter jejuni subsp. doylei 269.97	5389625
YP_001397957.1	CDS	JJD26997_0832	NC_009707.1	750656	750877	R	identified by glimmer; putative; hypothetical protein	complement(750656..750877)	Campylobacter jejuni subsp. doylei 269.97	5390077
YP_001397958.1	CDS	JJD26997_0833	NC_009707.1	750997	751605	R	identified by match to protein family HMM PF08668; HDOD domain-contain protein	complement(750997..751605)	Campylobacter jejuni subsp. doylei 269.97	5388592
YP_001397959.1	CDS	JJD26997_0834	NC_009707.1	751624	751848	R	lytic transglycosylase, catalytic	complement(751624..751848)	Campylobacter jejuni subsp. doylei 269.97	5390392
YP_001397960.1	CDS	JJD26997_0835	NC_009707.1	751861	752157	R	identified by glimmer; putative; hypothetical protein	complement(751861..752157)	Campylobacter jejuni subsp. doylei 269.97	5389856
YP_001397961.1	CDS	JJD26997_0836	NC_009707.1	752154	754556	R	identified by glimmer; putative; hypothetical protein	complement(752154..754556)	Campylobacter jejuni subsp. doylei 269.97	5388615
YP_001397962.1	CDS	JJD26997_0837	NC_009707.1	754549	755916	R	DNA transfer in the process of conjugation and F pilus assembly protein	complement(754549..755916)	Campylobacter jejuni subsp. doylei 269.97	5388780
YP_001397963.1	CDS	JJD26997_0838	NC_009707.1	755931	756668	R	identified by match to protein family HMM TIGR02681; hypothetical protein	complement(755931..756668)	Campylobacter jejuni subsp. doylei 269.97	5388726
YP_001397964.1	CDS	JJD26997_0839	NC_009707.1	756665	756934	R	identified by glimmer; putative; hypothetical protein	complement(756665..756934)	Campylobacter jejuni subsp. doylei 269.97	5389170
YP_001397965.1	CDS	JJD26997_0840	NC_009707.1	756952	757755	R	identified by glimmer; putative; hypothetical protein	complement(756952..757755)	Campylobacter jejuni subsp. doylei 269.97	5390419
YP_001397966.1	CDS	JJD26997_0841	NC_009707.1	757755	758321	R	identified by match to protein family HMM TIGR02681; hypothetical protein	complement(757755..758321)	Campylobacter jejuni subsp. doylei 269.97	5388599
YP_001397967.1	CDS	JJD26997_0844	NC_009707.1	759518	760207	R	identified by glimmer; putative; hypothetical protein	complement(759518..760207)	Campylobacter jejuni subsp. doylei 269.97	5389553
YP_001397968.1	CDS	JJD26997_0845	NC_009707.1	760475	761041	D	identified by match to protein family HMM PF01381; helix-turn-helix domain-containing protein	760475..761041	Campylobacter jejuni subsp. doylei 269.97	5389372
YP_001397969.1	CDS	JJD26997_0846	NC_009707.1	761358	761501	D	identified by glimmer; putative; hypothetical protein	761358..761501	Campylobacter jejuni subsp. doylei 269.97	5388858
YP_001397970.1	CDS	JJD26997_0847	NC_009707.1	762357	762812	D	identified by glimmer; putative; hypothetical protein	762357..762812	Campylobacter jejuni subsp. doylei 269.97	5389619
YP_001397971.1	CDS	JJD26997_0848	NC_009707.1	763349	763777	D	identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein family	763349..763777	Campylobacter jejuni subsp. doylei 269.97	5389850
YP_001397972.1	CDS	JJD26997_0849	NC_009707.1	763868	764074	D	identified by glimmer; putative; hypothetical protein	763868..764074	Campylobacter jejuni subsp. doylei 269.97	5389721
YP_001397973.1	CDS	JJD26997_0850	NC_009707.1	764100	764213	D	identified by glimmer; putative; hypothetical protein	764100..764213	Campylobacter jejuni subsp. doylei 269.97	5390211
YP_001397974.1	CDS	JJD26997_0851	NC_009707.1	764330	765208	D	identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913; putative prophage LambdaCh01, recombination protein Bet	764330..765208	Campylobacter jejuni subsp. doylei 269.97	5388874
YP_001397975.1	CDS	JJD26997_0852	NC_009707.1	765249	765749	D	identified by glimmer; putative; hypothetical protein	765249..765749	Campylobacter jejuni subsp. doylei 269.97	5389141
YP_001397976.1	CDS	JJD26997_0853	NC_009707.1	765957	766088	D	hypothetical protein	765957..766088	Campylobacter jejuni subsp. doylei 269.97	5390040
YP_001397977.1	CDS	JJD26997_0854	NC_009707.1	766310	766483	D	identified by glimmer; putative; hypothetical protein	766310..766483	Campylobacter jejuni subsp. doylei 269.97	5389073
YP_001397978.1	CDS	JJD26997_0855	NC_009707.1	766496	766714	D	identified by glimmer; putative; hypothetical protein	766496..766714	Campylobacter jejuni subsp. doylei 269.97	5388985
YP_001397979.1	CDS	tdk	NC_009707.1	766724	767215	D	identified by match to protein family HMM PF00265; thymidine kinase	766724..767215	Campylobacter jejuni subsp. doylei 269.97	5389620
YP_001397980.1	CDS	JJD26997_0857	NC_009707.1	767276	767521	D	identified by glimmer; putative; hypothetical protein	767276..767521	Campylobacter jejuni subsp. doylei 269.97	5389838
YP_001397981.1	CDS	JJD26997_0859	NC_009707.1	768040	768465	D	hypothetical protein	768040..768465	Campylobacter jejuni subsp. doylei 269.97	5390591
YP_001397982.1	CDS	JJD26997_0860	NC_009707.1	768465	768617	D	identified by glimmer; putative; hypothetical protein	768465..768617	Campylobacter jejuni subsp. doylei 269.97	5389279
YP_001397983.1	CDS	JJD26997_0861	NC_009707.1	768717	768989	D	identified by glimmer; putative; hypothetical protein	768717..768989	Campylobacter jejuni subsp. doylei 269.97	5389769
YP_001397984.1	CDS	JJD26997_0862	NC_009707.1	768992	769354	D	identified by glimmer; putative; hypothetical protein	768992..769354	Campylobacter jejuni subsp. doylei 269.97	5389078
YP_001397985.1	CDS	JJD26997_0863	NC_009707.1	769369	769947	D	identified by glimmer; putative; hypothetical protein	769369..769947	Campylobacter jejuni subsp. doylei 269.97	5390352
YP_001397986.1	CDS	JJD26997_0864	NC_009707.1	770044	770658	D	identified by glimmer; putative; hypothetical protein	770044..770658	Campylobacter jejuni subsp. doylei 269.97	5389338
YP_001397987.1	CDS	JJD26997_0865	NC_009707.1	770744	771328	D	hypothetical protein	770744..771328	Campylobacter jejuni subsp. doylei 269.97	5390356
YP_001397988.1	CDS	JJD26997_0866	NC_009707.1	771372	771869	D	identified by glimmer; putative; hypothetical protein	771372..771869	Campylobacter jejuni subsp. doylei 269.97	5388707
YP_001397989.1	CDS	JJD26997_0867	NC_009707.1	771930	773096	D	putative DNA primase	771930..773096	Campylobacter jejuni subsp. doylei 269.97	5389765
YP_001397990.1	CDS	JJD26997_0868	NC_009707.1	773108	773365	D	identified by glimmer; putative; hypothetical protein	773108..773365	Campylobacter jejuni subsp. doylei 269.97	5389301
YP_001397991.1	CDS	JJD26997_0869	NC_009707.1	773415	773828	D	BdrR	773415..773828	Campylobacter jejuni subsp. doylei 269.97	5389039
YP_001397992.1	CDS	JJD26997_0870	NC_009707.1	774152	774397	R	identified by match to protein family HMM PF05406; WGR domain-containing protein	complement(774152..774397)	Campylobacter jejuni subsp. doylei 269.97	5390199
YP_001397993.1	CDS	JJD26997_0871	NC_009707.1	774409	774639	R	hypothetical protein	complement(774409..774639)	Campylobacter jejuni subsp. doylei 269.97	5390276
YP_001397994.1	CDS	JJD26997_0872	NC_009707.1	774850	775710	D	identified by glimmer; putative; hypothetical protein	774850..775710	Campylobacter jejuni subsp. doylei 269.97	5390180
YP_001397995.1	CDS	atpE	NC_009707.1	777673	778011	R	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C	complement(777673..778011)	Campylobacter jejuni subsp. doylei 269.97	5389609
YP_001397996.1	CDS	JJD26997_0879	NC_009707.1	778242	779576	D	identified by match to protein family HMM PF00209; putative sodium transporter	778242..779576	Campylobacter jejuni subsp. doylei 269.97	5390471
YP_001397997.1	CDS	JJD26997_0880	NC_009707.1	779589	780929	D	identified by match to protein family HMM PF00209; putative sodium transporter	779589..780929	Campylobacter jejuni subsp. doylei 269.97	5389824
YP_001397998.1	CDS	JJD26997_0881	NC_009707.1	780962	782761	D	identified by match to protein family HMM PF00364; match to protein family HMM PF00682; oxaloacetate decarboxylase subunit alpha	780962..782761	Campylobacter jejuni subsp. doylei 269.97	5388656
YP_001397999.1	CDS	pckA	NC_009707.1	782774	784348	D	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase	782774..784348	Campylobacter jejuni subsp. doylei 269.97	5390576
YP_001398000.1	CDS	argH	NC_009707.1	784358	785740	D	catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase	784358..785740	Campylobacter jejuni subsp. doylei 269.97	5390608
YP_001398001.1	CDS	JJD26997_0884	NC_009707.1	785762	786865	R	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD	complement(785762..786865)	Campylobacter jejuni subsp. doylei 269.97	5389640
YP_001398002.1	CDS	JJD26997_0885	NC_009707.1	786862	788313	R	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase	complement(786862..788313)	Campylobacter jejuni subsp. doylei 269.97	5389248
YP_001398003.1	CDS	JJD26997_0886	NC_009707.1	788310	788906	R	DedA family protein	complement(788310..788906)	Campylobacter jejuni subsp. doylei 269.97	5389500
YP_001398004.1	CDS	apt	NC_009707.1	788925	789473	R	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase	complement(788925..789473)	Campylobacter jejuni subsp. doylei 269.97	5390309
YP_001398005.1	CDS	JJD26997_0888	NC_009707.1	789470	789802	R	hypothetical protein	complement(789470..789802)	Campylobacter jejuni subsp. doylei 269.97	5390489
YP_001398006.1	CDS	rpiB	NC_009707.1	789802	790239	R	identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase B	complement(789802..790239)	Campylobacter jejuni subsp. doylei 269.97	5389327
YP_001398007.1	CDS	cheB	NC_009707.1	790403	790957	D	identified by match to protein family HMM PF01339; protein-glutamate methylesterase CheB	790403..790957	Campylobacter jejuni subsp. doylei 269.97	5388860
YP_001398008.1	CDS	pebC	NC_009707.1	791897	792625	D	identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein PEB1	791897..792625	Campylobacter jejuni subsp. doylei 269.97	5389528
YP_001398009.1	CDS	pebA	NC_009707.1	792648	793427	D	PEB1; bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein	792648..793427	Campylobacter jejuni subsp. doylei 269.97	5389725
YP_001398010.1	CDS	JJD26997_0894	NC_009707.1	793429	794181	D	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease	793429..794181	Campylobacter jejuni subsp. doylei 269.97	5390171
YP_001398011.1	CDS	JJD26997_0895	NC_009707.1	794192	794851	D	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease	794192..794851	Campylobacter jejuni subsp. doylei 269.97	5388635
YP_001398012.1	CDS	prsA	NC_009707.1	794959	795888	D	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase	794959..795888	Campylobacter jejuni subsp. doylei 269.97	5388824
YP_001398013.1	CDS	cstA	NC_009707.1	796055	798166	D	identified by match to protein family HMM PF02554; carbon starvation protein A	796055..798166	Campylobacter jejuni subsp. doylei 269.97	5388980
YP_001398014.1	CDS	JJD26997_0898	NC_009707.1	798144	798344	D	identified by match to protein family HMM PF04328; hypothetical protein	798144..798344	Campylobacter jejuni subsp. doylei 269.97	5389993
YP_001398015.1	CDS	JJD26997_0899	NC_009707.1	798384	798797	R	identified by match to protein family HMM PF03061; thioesterase family protein	complement(798384..798797)	Campylobacter jejuni subsp. doylei 269.97	5390119
YP_001398016.1	CDS	ciaB	NC_009707.1	798859	800682	D	invasion antigen B	798859..800682	Campylobacter jejuni subsp. doylei 269.97	5390001
YP_001398017.1	CDS	hup	NC_009707.1	800794	801090	D	identified by match to protein family HMM PF00216; DNA-binding protein HU	800794..801090	Campylobacter jejuni subsp. doylei 269.97	5388617
YP_001398018.1	CDS	cysK	NC_009707.1	801217	802116	D	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A	801217..802116	Campylobacter jejuni subsp. doylei 269.97	5389501
YP_001398019.1	CDS	JJD26997_0903	NC_009707.1	802123	802680	R	identified by match to protein family HMM PF02630; SCO1/SenC family protein	complement(802123..802680)	Campylobacter jejuni subsp. doylei 269.97	5388842
YP_001398020.1	CDS	JJD26997_0904	NC_009707.1	802677	803129	R	hypothetical protein	complement(802677..803129)	Campylobacter jejuni subsp. doylei 269.97	5388775
YP_001398021.1	CDS	JJD26997_0905	NC_009707.1	803133	803552	R	identified by match to protein family HMM PF04314; hypothetical protein	complement(803133..803552)	Campylobacter jejuni subsp. doylei 269.97	5389404
YP_001398022.1	CDS	JJD26997_0906	NC_009707.1	804234	805211	D	hypothetical protein	804234..805211	Campylobacter jejuni subsp. doylei 269.97	5388975
YP_001398023.1	CDS	alr	NC_009707.1	805212	806198	D	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase	805212..806198	Campylobacter jejuni subsp. doylei 269.97	5388905
YP_001398024.1	CDS	JJD26997_0908	NC_009707.1	806201	806668	D	identified by match to protein family HMM PF00588; RNA methyltransferase	806201..806668	Campylobacter jejuni subsp. doylei 269.97	5390217
YP_001398025.1	CDS	JJD26997_0911	NC_009707.1	808265	808993	R	identified by match to protein family HMM PF00005; amino acid ABC transporter, ATP-binding protein	complement(808265..808993)	Campylobacter jejuni subsp. doylei 269.97	5390117
YP_001398026.1	CDS	JJD26997_0912	NC_009707.1	808986	809729	R	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine amino acid ABC transporter permease	complement(808986..809729)	Campylobacter jejuni subsp. doylei 269.97	5390206
YP_001398027.1	CDS	JJD26997_0913	NC_009707.1	809812	809991	D	identified by glimmer; putative; hypothetical protein	809812..809991	Campylobacter jejuni subsp. doylei 269.97	5389606
YP_001398028.1	CDS	thiJ	NC_009707.1	809984	810553	D	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein	809984..810553	Campylobacter jejuni subsp. doylei 269.97	5388748
YP_001398029.1	CDS	JJD26997_0915	NC_009707.1	810583	810948	R	identified by match to protein family HMM PF01230; HIT family protein	complement(810583..810948)	Campylobacter jejuni subsp. doylei 269.97	5389576
YP_001398030.1	CDS	pheS	NC_009707.1	811071	812063	D	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha	811071..812063	Campylobacter jejuni subsp. doylei 269.97	5390100
YP_001398031.1	CDS	pheT	NC_009707.1	812060	814381	D	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta	812060..814381	Campylobacter jejuni subsp. doylei 269.97	5389588
YP_001398032.1	CDS	aroA	NC_009707.1	814393	815664	D	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase	814393..815664	Campylobacter jejuni subsp. doylei 269.97	5388843
YP_001398033.1	CDS	ispH	NC_009707.1	815654	816487	D	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase	815654..816487	Campylobacter jejuni subsp. doylei 269.97	5388729
YP_001398034.1	CDS	rpsA	NC_009707.1	816617	818287	D	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1	816617..818287	Campylobacter jejuni subsp. doylei 269.97	5390366
YP_001398035.1	CDS	JJD26997_0921	NC_009707.1	818287	818775	D	identified by glimmer; putative; hypothetical protein	818287..818775	Campylobacter jejuni subsp. doylei 269.97	5390073
YP_001398036.1	CDS	serA	NC_009707.1	818772	820355	D	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase	818772..820355	Campylobacter jejuni subsp. doylei 269.97	5388607
YP_001398037.1	CDS	JJD26997_0923	NC_009707.1	820342	821004	D	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator	820342..821004	Campylobacter jejuni subsp. doylei 269.97	5389015
YP_001398038.1	CDS	JJD26997_0924	NC_009707.1	820998	822287	D	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase	820998..822287	Campylobacter jejuni subsp. doylei 269.97	5389342
YP_001398039.1	CDS	JJD26997_0925	NC_009707.1	822291	824222	D	identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein	822291..824222	Campylobacter jejuni subsp. doylei 269.97	5389875
YP_001398040.1	CDS	JJD26997_0926	NC_009707.1	824881	826377	R	identified by match to protein family HMM PF00580; F-box only protein 18	complement(824881..826377)	Campylobacter jejuni subsp. doylei 269.97	5389065
YP_001398041.1	CDS	JJD26997_0927	NC_009707.1	826352	827167	R	identified by glimmer; putative; hypothetical protein	complement(826352..827167)	Campylobacter jejuni subsp. doylei 269.97	5390580
YP_001398042.1	CDS	JJD26997_0928	NC_009707.1	827455	827739	D	identified by glimmer; putative; hypothetical protein	827455..827739	Campylobacter jejuni subsp. doylei 269.97	5388793
YP_001398043.1	CDS	JJD26997_0929	NC_009707.1	827819	828124	D	putative sex pilus assembly	827819..828124	Campylobacter jejuni subsp. doylei 269.97	5390186
YP_001398044.1	CDS	JJD26997_0930	NC_009707.1	828128	828706	D	putative conjugative transfer protein TraE	828128..828706	Campylobacter jejuni subsp. doylei 269.97	5390302
YP_001398045.1	CDS	JJD26997_0931	NC_009707.1	828703	829515	D	identified by glimmer; putative; hypothetical protein	828703..829515	Campylobacter jejuni subsp. doylei 269.97	5389265
YP_001398046.1	CDS	JJD26997_0932	NC_009707.1	829512	830852	D	identified by match to protein family HMM PF06447; sex pilus assembly protein	829512..830852	Campylobacter jejuni subsp. doylei 269.97	5390447
YP_001398047.1	CDS	JJD26997_0933	NC_009707.1	830865	831629	D	hypothetical protein	830865..831629	Campylobacter jejuni subsp. doylei 269.97	5389596
YP_001398048.1	CDS	JJD26997_0934	NC_009707.1	831626	832378	D	putative lipoprotein	831626..832378	Campylobacter jejuni subsp. doylei 269.97	5388932
YP_001398049.1	CDS	JJD26997_0935	NC_009707.1	832347	832736	D	identified by glimmer; putative; hypothetical protein	832347..832736	Campylobacter jejuni subsp. doylei 269.97	5390098
YP_001398050.1	CDS	JJD26997_0936	NC_009707.1	833095	835167	D	putative pillus assembly protein	833095..835167	Campylobacter jejuni subsp. doylei 269.97	5390470
YP_001398051.1	CDS	JJD26997_0937	NC_009707.1	835154	835657	D	putative type IV secretory protease	835154..835657	Campylobacter jejuni subsp. doylei 269.97	5390373
YP_001398052.1	CDS	JJD26997_0938	NC_009707.1	835645	837111	D	putative TraG	835645..837111	Campylobacter jejuni subsp. doylei 269.97	5390533
YP_001398053.1	CDS	JJD26997_0940	NC_009707.1	838345	840537	D	identified by match to protein family HMM PF00059; lectin C-type domain-containing protein	838345..840537	Campylobacter jejuni subsp. doylei 269.97	5390159
YP_001398054.1	CDS	JJD26997_0941	NC_009707.1	840803	843571	D	hypothetical protein	840803..843571	Campylobacter jejuni subsp. doylei 269.97	5388684
YP_001398055.1	CDS	JJD26997_0942	NC_009707.1	843809	844267	R	identified by glimmer; putative; hypothetical protein	complement(843809..844267)	Campylobacter jejuni subsp. doylei 269.97	5389634
YP_001398056.1	CDS	JJD26997_0943	NC_009707.1	844487	844762	R	identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; addiction module antitoxin	complement(844487..844762)	Campylobacter jejuni subsp. doylei 269.97	5389118
YP_001398057.1	CDS	JJD26997_0944	NC_009707.1	844763	844957	R	identified by glimmer; putative; hypothetical protein	complement(844763..844957)	Campylobacter jejuni subsp. doylei 269.97	5389028
YP_001398058.1	CDS	JJD26997_0945	NC_009707.1	845070	845351	R	plasmid stabilization system protein	complement(845070..845351)	Campylobacter jejuni subsp. doylei 269.97	5389355
YP_001398059.1	CDS	JJD26997_0946	NC_009707.1	845352	845585	R	hypothetical protein	complement(845352..845585)	Campylobacter jejuni subsp. doylei 269.97	5389876
YP_001398060.1	CDS	JJD26997_0947	NC_009707.1	845741	845905	R	hypothetical protein	complement(845741..845905)	Campylobacter jejuni subsp. doylei 269.97	5390064
YP_001398061.1	CDS	JJD26997_0948	NC_009707.1	845898	846230	R	identified by glimmer; putative; hypothetical protein	complement(845898..846230)	Campylobacter jejuni subsp. doylei 269.97	5389237
YP_001398062.1	CDS	JJD26997_0949	NC_009707.1	846248	846490	R	hypothetical protein	complement(846248..846490)	Campylobacter jejuni subsp. doylei 269.97	5389284
YP_001398063.1	CDS	JJD26997_0950	NC_009707.1	846474	846701	R	hypothetical protein	complement(846474..846701)	Campylobacter jejuni subsp. doylei 269.97	5389795
YP_001398064.1	CDS	JJD26997_0951	NC_009707.1	846972	847724	D	identified by match to protein family HMM PF01555; DNA methylase	846972..847724	Campylobacter jejuni subsp. doylei 269.97	5390101
YP_001398065.1	CDS	JJD26997_0952	NC_009707.1	847727	848458	D	identified by glimmer; putative; hypothetical protein	847727..848458	Campylobacter jejuni subsp. doylei 269.97	5388857
YP_001398066.1	CDS	JJD26997_0953	NC_009707.1	848622	848741	R	identified by glimmer; putative; hypothetical protein	complement(848622..848741)	Campylobacter jejuni subsp. doylei 269.97	5388627
YP_001398067.1	CDS	JJD26997_0954	NC_009707.1	849066	849293	R	identified by glimmer; putative; hypothetical protein	complement(849066..849293)	Campylobacter jejuni subsp. doylei 269.97	5389343
YP_001398068.1	CDS	JJD26997_0955	NC_009707.1	849322	849447	D	identified by glimmer; putative; hypothetical protein	849322..849447	Campylobacter jejuni subsp. doylei 269.97	5388757
YP_001398069.1	CDS	JJD26997_0956	NC_009707.1	849512	850354	D	identified by glimmer; putative; hypothetical protein	849512..850354	Campylobacter jejuni subsp. doylei 269.97	5389439
YP_001398070.1	CDS	JJD26997_0957	NC_009707.1	850357	850776	D	hypothetical protein	850357..850776	Campylobacter jejuni subsp. doylei 269.97	5389517
YP_001398071.1	CDS	JJD26997_0958	NC_009707.1	850932	851081	D	identified by glimmer; putative; hypothetical protein	850932..851081	Campylobacter jejuni subsp. doylei 269.97	5388901
YP_001398072.1	CDS	JJD26997_0959	NC_009707.1	851078	851467	D	identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550; death-on-curing family protein	851078..851467	Campylobacter jejuni subsp. doylei 269.97	5389730
YP_001398073.1	CDS	JJD26997_0960	NC_009707.1	851529	852176	D	hypothetical protein	851529..852176	Campylobacter jejuni subsp. doylei 269.97	5388636
YP_001398074.1	CDS	JJD26997_0961	NC_009707.1	852173	852502	D	hypothetical protein	852173..852502	Campylobacter jejuni subsp. doylei 269.97	5389162
YP_001398075.1	CDS	JJD26997_0962	NC_009707.1	853403	853687	D	hypothetical protein	853403..853687	Campylobacter jejuni subsp. doylei 269.97	5390411
YP_001398076.1	CDS	JJD26997_0963	NC_009707.1	853677	853865	D	identified by glimmer; putative; hypothetical protein	853677..853865	Campylobacter jejuni subsp. doylei 269.97	5388677
YP_001398077.1	CDS	JJD26997_0964	NC_009707.1	853914	854342	R	putative thioredoxin	complement(853914..854342)	Campylobacter jejuni subsp. doylei 269.97	5388804
YP_001398078.1	CDS	JJD26997_0965	NC_009707.1	854355	855137	R	identified by match to protein family HMM PF05818; TraT complement resistance protein	complement(854355..855137)	Campylobacter jejuni subsp. doylei 269.97	5388900
YP_001398079.1	CDS	JJD26997_0966	NC_009707.1	855124	855288	R	identified by glimmer; putative; hypothetical protein	complement(855124..855288)	Campylobacter jejuni subsp. doylei 269.97	5390046
YP_001398080.1	CDS	JJD26997_0967	NC_009707.1	855243	855395	R	identified by glimmer; putative; hypothetical protein	complement(855243..855395)	Campylobacter jejuni subsp. doylei 269.97	5389943
YP_001398081.1	CDS	JJD26997_0968	NC_009707.1	855449	856393	R	identified by glimmer; putative; hypothetical protein	complement(855449..856393)	Campylobacter jejuni subsp. doylei 269.97	5390135
YP_001398082.1	CDS	JJD26997_0969	NC_009707.1	856409	856669	R	hypothetical protein	complement(856409..856669)	Campylobacter jejuni subsp. doylei 269.97	5390536
YP_001398083.1	CDS	JJD26997_0970	NC_009707.1	856783	857070	R	identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator	complement(856783..857070)	Campylobacter jejuni subsp. doylei 269.97	5388992
YP_001398084.1	CDS	JJD26997_0973	NC_009707.1	858106	858780	R	putative cytoplasmic protein	complement(858106..858780)	Campylobacter jejuni subsp. doylei 269.97	5389967
YP_001398085.1	CDS	JJD26997_0974	NC_009707.1	858793	859566	R	identified by glimmer; putative; hypothetical protein	complement(858793..859566)	Campylobacter jejuni subsp. doylei 269.97	5388846
YP_001398086.1	CDS	JJD26997_0975	NC_009707.1	860070	860222	R	identified by glimmer; putative; hypothetical protein	complement(860070..860222)	Campylobacter jejuni subsp. doylei 269.97	5388762
YP_001398087.1	CDS	JJD26997_0976	NC_009707.1	860485	860610	R	identified by glimmer; putative; hypothetical protein	complement(860485..860610)	Campylobacter jejuni subsp. doylei 269.97	5390269
YP_001398088.1	CDS	JJD26997_0977	NC_009707.1	860811	861233	D	identified by glimmer; putative; hypothetical protein	860811..861233	Campylobacter jejuni subsp. doylei 269.97	5390390
YP_001398089.1	CDS	JJD26997_0978	NC_009707.1	861352	861471	R	identified by glimmer; putative; hypothetical protein	complement(861352..861471)	Campylobacter jejuni subsp. doylei 269.97	5389321
YP_001398090.1	CDS	JJD26997_0981	NC_009707.1	863399	863620	D	identified by glimmer; putative; hypothetical protein	863399..863620	Campylobacter jejuni subsp. doylei 269.97	5390283
YP_001398091.1	CDS	JJD26997_0982	NC_009707.1	863675	863956	D	hypothetical protein	863675..863956	Campylobacter jejuni subsp. doylei 269.97	5388652
YP_001398092.1	CDS	JJD26997_0983	NC_009707.1	863937	864428	D	identified by glimmer; putative; hypothetical protein	863937..864428	Campylobacter jejuni subsp. doylei 269.97	5389942
YP_001398093.1	CDS	JJD26997_0984	NC_009707.1	864525	864821	R	ankyrin repeat-containing protein	complement(864525..864821)	Campylobacter jejuni subsp. doylei 269.97	5389499
YP_001398094.1	CDS	acnB	NC_009707.1	864923	867469	R	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	complement(864923..867469)	Campylobacter jejuni subsp. doylei 269.97	5389128
YP_001398095.1	CDS	ogt	NC_009707.1	867524	867976	D	identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine S-methyltransferase	867524..867976	Campylobacter jejuni subsp. doylei 269.97	5388711
YP_001398096.1	CDS	JJD26997_0986	NC_009707.1	867968	868909	R	hypothetical protein	complement(867968..868909)	Campylobacter jejuni subsp. doylei 269.97	5389631
YP_001398097.1	CDS	metS	NC_009707.1	868913	870799	R	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase	complement(868913..870799)	Campylobacter jejuni subsp. doylei 269.97	5389341
YP_001398098.1	CDS	JJD26997_0989	NC_009707.1	870809	870973	R	hypothetical protein	complement(870809..870973)	Campylobacter jejuni subsp. doylei 269.97	5389831
YP_001398099.1	CDS	fbp	NC_009707.1	870999	871841	R	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase	complement(870999..871841)	Campylobacter jejuni subsp. doylei 269.97	5388814
YP_001398100.1	CDS	mobB	NC_009707.1	871843	872334	R	identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein MobB	complement(871843..872334)	Campylobacter jejuni subsp. doylei 269.97	5390558
YP_001398101.1	CDS	JJD26997_0992	NC_009707.1	872812	874437	R	identified by match to protein family HMM PF01464; lytic murein transglycosylase	complement(872812..874437)	Campylobacter jejuni subsp. doylei 269.97	5389117
YP_001398102.1	CDS	JJD26997_0993	NC_009707.1	874434	874715	R	identified by match to protein family HMM PF02325; hypothetical protein	complement(874434..874715)	Campylobacter jejuni subsp. doylei 269.97	5389559
YP_001398103.1	CDS	gltX-1	NC_009707.1	874718	876013	R	charges one glutamine molecule and pairs it with tRNA(Gln); glutamylglutaminyl-tRNA synthetase	complement(874718..876013)	Campylobacter jejuni subsp. doylei 269.97	5388693
YP_001398104.1	CDS	JJD26997_0995	NC_009707.1	876099	877223	D	identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein	876099..877223	Campylobacter jejuni subsp. doylei 269.97	5389748
YP_001398105.1	CDS	psd	NC_009707.1	877220	878020	D	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase	877220..878020	Campylobacter jejuni subsp. doylei 269.97	5389951
YP_001398106.1	CDS	JJD26997_0996	NC_009707.1	878017	878298	R	identified by match to protein family HMM TIGR00789; FlhB domain-containing protein	complement(878017..878298)	Campylobacter jejuni subsp. doylei 269.97	5389787
YP_001398107.1	CDS	JJD26997_0998	NC_009707.1	878295	880391	R	identified by glimmer; putative; hypothetical protein	complement(878295..880391)	Campylobacter jejuni subsp. doylei 269.97	5389969
YP_001398108.1	CDS	JJD26997_0999	NC_009707.1	880384	881571	R	identified by match to protein family HMM PF07690; major facilitator family protein	complement(880384..881571)	Campylobacter jejuni subsp. doylei 269.97	5390085
YP_001398109.1	CDS	JJD26997_1000	NC_009707.1	881549	882052	R	hypothetical protein	complement(881549..882052)	Campylobacter jejuni subsp. doylei 269.97	5388722
YP_001398110.1	CDS	JJD26997_1001	NC_009707.1	882052	882267	R	hypothetical protein	complement(882052..882267)	Campylobacter jejuni subsp. doylei 269.97	5388935
YP_001398111.1	CDS	hemL	NC_009707.1	882378	883652	R	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase	complement(882378..883652)	Campylobacter jejuni subsp. doylei 269.97	5389768
YP_001398112.1	CDS	JJD26997_1003	NC_009707.1	883649	883996	R	hypothetical protein	complement(883649..883996)	Campylobacter jejuni subsp. doylei 269.97	5390232
YP_001398113.1	CDS	folD	NC_009707.1	884076	884924	D	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase	884076..884924	Campylobacter jejuni subsp. doylei 269.97	5388946
YP_001398114.1	CDS	lepB	NC_009707.1	884934	885785	D	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I	884934..885785	Campylobacter jejuni subsp. doylei 269.97	5388753
YP_001398115.1	CDS	JJD26997_1006	NC_009707.1	885807	886967	R	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis MoeA protein	complement(885807..886967)	Campylobacter jejuni subsp. doylei 269.97	5388982
YP_001398116.1	CDS	murA	NC_009707.1	886964	888220	R	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase	complement(886964..888220)	Campylobacter jejuni subsp. doylei 269.97	5388666
YP_001398117.1	CDS	JJD26997_1010	NC_009707.1	888808	889260	D	identified by match to protein family HMM PF00892; integral membrane protein	888808..889260	Campylobacter jejuni subsp. doylei 269.97	5389119
YP_001398118.1	CDS	pabA	NC_009707.1	889247	889813	R	identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; para-aminobenzoate synthase glutamine amidotransferase, component II	complement(889247..889813)	Campylobacter jejuni subsp. doylei 269.97	5389526
YP_001398119.1	CDS	pabB	NC_009707.1	889810	891594	R	identified by match to protein family HMM PF00425; para-aminobenzoate synthase glutamine amidotransferase, component I	complement(889810..891594)	Campylobacter jejuni subsp. doylei 269.97	5389229
YP_001398120.1	CDS	JJD26997_1012	NC_009707.1	891584	892648	R	identified by match to protein family HMM PF00589; phage integrase family site specific recombinase	complement(891584..892648)	Campylobacter jejuni subsp. doylei 269.97	5390381
YP_001398121.1	CDS	dsbA	NC_009707.1	893276	893938	D	thiol:disulfide interchange protein DsbA	893276..893938	Campylobacter jejuni subsp. doylei 269.97	5389086
YP_001398122.1	CDS	dsbB	NC_009707.1	893950	894735	D	putative disulfide oxidoreductase	893950..894735	Campylobacter jejuni subsp. doylei 269.97	5389744
YP_001398123.1	CDS	JJD26997_1021	NC_009707.1	896370	897041	D	identified by match to protein family HMM PF01323; putative thiol:disulfide interchange protein DsbA	896370..897041	Campylobacter jejuni subsp. doylei 269.97	5389164
YP_001398124.1	CDS	JJD26997_1024	NC_009707.1	897698	898204	R	hypothetical protein	complement(897698..898204)	Campylobacter jejuni subsp. doylei 269.97	5389427
YP_001398125.1	CDS	JJD26997_1025	NC_009707.1	898201	898443	R	hypothetical protein	complement(898201..898443)	Campylobacter jejuni subsp. doylei 269.97	5389921
YP_001398126.1	CDS	JJD26997_1026	NC_009707.1	898427	899473	R	hypothetical protein	complement(898427..899473)	Campylobacter jejuni subsp. doylei 269.97	5390268
YP_001398127.1	CDS	flhA	NC_009707.1	899482	901617	R	membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA	complement(899482..901617)	Campylobacter jejuni subsp. doylei 269.97	5388913
YP_001398128.1	CDS	JJD26997_1028	NC_009707.1	901643	902053	R	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; putative RrF2 family protein	complement(901643..902053)	Campylobacter jejuni subsp. doylei 269.97	5388931
YP_001398129.1	CDS	rpsO	NC_009707.1	902228	902500	D	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15	902228..902500	Campylobacter jejuni subsp. doylei 269.97	5389844
YP_001398130.1	CDS	JJD26997_1030	NC_009707.1	902582	905419	R	identified by match to protein family HMM PF01580; putative cell division protein FtsK	complement(902582..905419)	Campylobacter jejuni subsp. doylei 269.97	5389040
YP_001398131.1	CDS	JJD26997_1031	NC_009707.1	905529	907781	R	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; lagellar hook-associated protein FlgL	complement(905529..907781)	Campylobacter jejuni subsp. doylei 269.97	5390365
YP_001398132.1	CDS	JJD26997_1037	NC_009707.1	909974	910324	R	phage integrase family site specific recombinase	complement(909974..910324)	Campylobacter jejuni subsp. doylei 269.97	5389807
YP_001398133.1	CDS	JJD26997_1038	NC_009707.1	910427	910543	D	identified by glimmer; putative; hypothetical protein	910427..910543	Campylobacter jejuni subsp. doylei 269.97	5389638
YP_001398134.1	CDS	JJD26997_1039	NC_009707.1	911651	911773	D	identified by glimmer; putative; hypothetical protein	911651..911773	Campylobacter jejuni subsp. doylei 269.97	5389776
YP_001398135.1	CDS	JJD26997_1040	NC_009707.1	911953	912111	D	hypothetical protein	911953..912111	Campylobacter jejuni subsp. doylei 269.97	5389680
YP_001398136.1	CDS	JJD26997_1041	NC_009707.1	912138	915392	R	identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; autotransporter beta-domain-containing protein	complement(912138..915392)	Campylobacter jejuni subsp. doylei 269.97	5389926
YP_001398137.1	CDS	hypA	NC_009707.1	915573	915917	R	identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel incorporation protein HypA	complement(915573..915917)	Campylobacter jejuni subsp. doylei 269.97	5390201
YP_001398138.1	CDS	hypE	NC_009707.1	915917	916891	R	identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE	complement(915917..916891)	Campylobacter jejuni subsp. doylei 269.97	5390274
YP_001398139.1	CDS	hypD	NC_009707.1	916888	917979	R	identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD	complement(916888..917979)	Campylobacter jejuni subsp. doylei 269.97	5389330
YP_001398140.1	CDS	hypC	NC_009707.1	917963	918244	R	identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF	complement(917963..918244)	Campylobacter jejuni subsp. doylei 269.97	5388863
YP_001398141.1	CDS	hypB	NC_009707.1	918244	918984	R	identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB	complement(918244..918984)	Campylobacter jejuni subsp. doylei 269.97	5389207
YP_001398142.1	CDS	hypF	NC_009707.1	919061	921250	R	identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF	complement(919061..921250)	Campylobacter jejuni subsp. doylei 269.97	5388906
YP_001398143.1	CDS	JJD26997_1048	NC_009707.1	921231	922751	R	identified by glimmer; putative; hypothetical protein	complement(921231..922751)	Campylobacter jejuni subsp. doylei 269.97	5389974
YP_001398144.1	CDS	JJD26997_1049	NC_009707.1	922792	923439	R	identified by match to protein family HMM PF01863; hypothetical protein	complement(922792..923439)	Campylobacter jejuni subsp. doylei 269.97	5389657
YP_001398145.1	CDS	JJD26997_1050	NC_009707.1	923415	924731	R	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein	complement(923415..924731)	Campylobacter jejuni subsp. doylei 269.97	5390313
YP_001398146.1	CDS	pstB	NC_009707.1	926144	926884	R	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein	complement(926144..926884)	Campylobacter jejuni subsp. doylei 269.97	5390246
YP_001398147.1	CDS	JJD26997_1054	NC_009707.1	926881	927969	R	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease	complement(926881..927969)	Campylobacter jejuni subsp. doylei 269.97	5390015
YP_001398148.1	CDS	JJD26997_1055	NC_009707.1	927966	928880	R	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; putative phosphate ABC transporter permease PstC	complement(927966..928880)	Campylobacter jejuni subsp. doylei 269.97	5389281
YP_001398149.1	CDS	JJD26997_1056	NC_009707.1	928890	929885	R	putative phosphate ABC transporter periplasmic phosphate-binding protein	complement(928890..929885)	Campylobacter jejuni subsp. doylei 269.97	5389169
YP_001398150.1	CDS	JJD26997_1057	NC_009707.1	929901	930029	R	identified by glimmer; putative; hypothetical protein	complement(929901..930029)	Campylobacter jejuni subsp. doylei 269.97	5389805
YP_001398151.1	CDS	ftn	NC_009707.1	930220	930723	D	identified by match to protein family HMM PF00210; nonheme iron-containing ferritin	930220..930723	Campylobacter jejuni subsp. doylei 269.97	5389199
YP_001398152.1	CDS	algI	NC_009707.1	930766	932142	D	identified by match to protein family HMM PF03062; alginate O-acetyltransferase AlgI	930766..932142	Campylobacter jejuni subsp. doylei 269.97	5390518
YP_001398153.1	CDS	JJD26997_1060	NC_009707.1	932143	933141	D	identified by match to protein family HMM PF04311; hypothetical protein	932143..933141	Campylobacter jejuni subsp. doylei 269.97	5389454
YP_001398154.1	CDS	JJD26997_1061	NC_009707.1	933128	934306	D	hypothetical protein	933128..934306	Campylobacter jejuni subsp. doylei 269.97	5389880
YP_001398155.1	CDS	JJD26997_1062	NC_009707.1	934309	935679	R	identified by match to protein family HMM PF02321; outer membrane efflux protein	complement(934309..935679)	Campylobacter jejuni subsp. doylei 269.97	5389422
YP_001398156.1	CDS	JJD26997_1063	NC_009707.1	935681	937606	R	identified by match to protein family HMM PF00005; match to protein family HMM PF02687; macrolide-specific efflux protein macB	complement(935681..937606)	Campylobacter jejuni subsp. doylei 269.97	5389913
YP_001398157.1	CDS	JJD26997_1064	NC_009707.1	937606	938778	R	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; macrolide-specific efflux protein macA	complement(937606..938778)	Campylobacter jejuni subsp. doylei 269.97	5389270
YP_001398158.1	CDS	JJD26997_1065	NC_009707.1	938857	940047	R	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; carboxypeptidase	complement(938857..940047)	Campylobacter jejuni subsp. doylei 269.97	5389715
YP_001398159.1	CDS	dsbD	NC_009707.1	941015	942718	D	identified by match to protein family HMM PF00085; match to protein family HMM PF02683; thiol:disulfide interchange protein DsbD	941015..942718	Campylobacter jejuni subsp. doylei 269.97	5389849
YP_001398160.1	CDS	JJD26997_1069	NC_009707.1	942886	944229	D	identified by match to protein family HMM PF00209; putative sodium-dependent transporter	942886..944229	Campylobacter jejuni subsp. doylei 269.97	5390189
YP_001398161.1	CDS	JJD26997_1068	NC_009707.1	944221	945096	R	hypothetical protein	complement(944221..945096)	Campylobacter jejuni subsp. doylei 269.97	5389419
YP_001398162.1	CDS	JJD26997_1070	NC_009707.1	945083	946036	R	identified by match to protein family HMM PF00691; chemotaxis protein MotB	complement(945083..946036)	Campylobacter jejuni subsp. doylei 269.97	5388655
YP_001398163.1	CDS	JJD26997_1071	NC_009707.1	946026	947477	R	identified by glimmer; putative; hypothetical protein	complement(946026..947477)	Campylobacter jejuni subsp. doylei 269.97	5389096
YP_001398164.1	CDS	fbaA	NC_009707.1	947572	948636	R	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase	complement(947572..948636)	Campylobacter jejuni subsp. doylei 269.97	5389819
YP_001398165.1	CDS	JJD26997_1073	NC_009707.1	948636	949457	R	identified by match to protein family HMM PF00639; major antigenic peptide PEB4	complement(948636..949457)	Campylobacter jejuni subsp. doylei 269.97	5390126
YP_001398166.1	CDS	nth	NC_009707.1	949538	950164	D	identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III	949538..950164	Campylobacter jejuni subsp. doylei 269.97	5390025
YP_001398167.1	CDS	JJD26997_1075	NC_009707.1	950161	950811	D	identified by match to protein family HMM PF01223; DNA/RNA non-specific endonuclease	950161..950811	Campylobacter jejuni subsp. doylei 269.97	5389879
YP_001398168.1	CDS	JJD26997_1076	NC_009707.1	950822	951454	D	identified by match to protein family HMM PF03458; hypothetical protein	950822..951454	Campylobacter jejuni subsp. doylei 269.97	5389945
YP_001398169.1	CDS	JJD26997_1077	NC_009707.1	951512	951952	D	identified by glimmer; putative; hypothetical protein	951512..951952	Campylobacter jejuni subsp. doylei 269.97	5389685
YP_001398170.1	CDS	JJD26997_1079	NC_009707.1	951949	952164	D	putative lipoprotein	951949..952164	Campylobacter jejuni subsp. doylei 269.97	5390059
YP_001398171.1	CDS	JJD26997_1078	NC_009707.1	952154	952861	R	identified by match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00740; putative methyltransferase	complement(952154..952861)	Campylobacter jejuni subsp. doylei 269.97	5389116
YP_001398172.1	CDS	JJD26997_1080	NC_009707.1	952851	953705	R	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase	complement(952851..953705)	Campylobacter jejuni subsp. doylei 269.97	5389213
YP_001398173.1	CDS	tlyA	NC_009707.1	953671	954432	R	identified by match to protein family HMM PF01728; hemolysin A	complement(953671..954432)	Campylobacter jejuni subsp. doylei 269.97	5389848
YP_001398174.1	CDS	ligA	NC_009707.1	955298	957241	R	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA	complement(955298..957241)	Campylobacter jejuni subsp. doylei 269.97	5390553
YP_001398175.1	CDS	folP	NC_009707.1	957242	958384	R	identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase	complement(957242..958384)	Campylobacter jejuni subsp. doylei 269.97	5389212
YP_001398176.1	CDS	JJD26997_1085	NC_009707.1	958386	958985	R	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta'	complement(958386..958985)	Campylobacter jejuni subsp. doylei 269.97	5388750
YP_001398177.1	CDS	JJD26997_1086	NC_009707.1	958991	959527	R	hypothetical protein	complement(958991..959527)	Campylobacter jejuni subsp. doylei 269.97	5388941
YP_001398178.1	CDS	JJD26997_1087	NC_009707.1	959528	960730	R	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase	complement(959528..960730)	Campylobacter jejuni subsp. doylei 269.97	5390321
YP_001398179.1	CDS	nidH	NC_009707.1	960732	961202	R	hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase	complement(960732..961202)	Campylobacter jejuni subsp. doylei 269.97	5389896
YP_001398180.1	CDS	JJD26997_1089	NC_009707.1	961302	962369	D	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase	961302..962369	Campylobacter jejuni subsp. doylei 269.97	5390441
YP_001398181.1	CDS	tatC	NC_009707.1	962837	963574	D	identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC	962837..963574	Campylobacter jejuni subsp. doylei 269.97	5389555
YP_001398182.1	CDS	queA	NC_009707.1	963564	964595	D	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase	963564..964595	Campylobacter jejuni subsp. doylei 269.97	5389650
YP_001398183.1	CDS	lpxD	NC_009707.1	966455	967411	R	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	complement(966455..967411)	Campylobacter jejuni subsp. doylei 269.97	5389811
YP_001398184.1	CDS	ilvH	NC_009707.1	967408	967872	R	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit	complement(967408..967872)	Campylobacter jejuni subsp. doylei 269.97	5389332
YP_001398185.1	CDS	ilvB	NC_009707.1	967869	969569	R	catalyzes the formation of 2-acetolactate from pyruvate, leucine resistant; also known as acetolactate synthase 3 large subunit; acetolactate synthase 3 catalytic subunit	complement(967869..969569)	Campylobacter jejuni subsp. doylei 269.97	5388620
YP_001398186.1	CDS	ribB	NC_009707.1	969846	970865	R	bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein	complement(969846..970865)	Campylobacter jejuni subsp. doylei 269.97	5389687
YP_001398187.1	CDS	JJD26997_1101	NC_009707.1	971341	972540	D	identified by match to protein family HMM PF00589; site-specific recombinase phage integrase family protein	971341..972540	Campylobacter jejuni subsp. doylei 269.97	5388893
YP_001398188.1	CDS	JJD26997_1103	NC_009707.1	973229	973435	R	hypothetical protein	complement(973229..973435)	Campylobacter jejuni subsp. doylei 269.97	5389401
YP_001398189.1	CDS	JJD26997_1104	NC_009707.1	973471	974214	R	identified by glimmer; putative; hypothetical protein	complement(973471..974214)	Campylobacter jejuni subsp. doylei 269.97	5389431
YP_001398190.1	CDS	JJD26997_1105	NC_009707.1	974241	974636	R	phage protein	complement(974241..974636)	Campylobacter jejuni subsp. doylei 269.97	5390279
YP_001398191.1	CDS	JJD26997_1106	NC_009707.1	974683	974919	R	identified by glimmer; putative; hypothetical protein	complement(974683..974919)	Campylobacter jejuni subsp. doylei 269.97	5390214
YP_001398192.1	CDS	JJD26997_1107	NC_009707.1	974969	975274	R	identified by glimmer; putative; hypothetical protein	complement(974969..975274)	Campylobacter jejuni subsp. doylei 269.97	5390383
YP_001398193.1	CDS	JJD26997_1108	NC_009707.1	975291	975551	R	hypothetical protein	complement(975291..975551)	Campylobacter jejuni subsp. doylei 269.97	5389071
YP_001398194.1	CDS	JJD26997_1109	NC_009707.1	975532	976221	R	hypothetical protein	complement(975532..976221)	Campylobacter jejuni subsp. doylei 269.97	5390457
YP_001398195.1	CDS	JJD26997_1110	NC_009707.1	976221	976955	R	hypothetical protein	complement(976221..976955)	Campylobacter jejuni subsp. doylei 269.97	5390290
YP_001398196.1	CDS	JJD26997_1111	NC_009707.1	976952	977812	R	hypothetical protein	complement(976952..977812)	Campylobacter jejuni subsp. doylei 269.97	5389741
YP_001398197.1	CDS	JJD26997_1112	NC_009707.1	977802	978545	R	identified by match to protein family HMM PF03374; DNA-binding protein Roi	complement(977802..978545)	Campylobacter jejuni subsp. doylei 269.97	5389206
YP_001398198.1	CDS	JJD26997_1113	NC_009707.1	978548	979216	R	putative phage anti-repressor protein	complement(978548..979216)	Campylobacter jejuni subsp. doylei 269.97	5390195
YP_001398199.1	CDS	JJD26997_1114	NC_009707.1	979261	979389	R	identified by glimmer; putative; hypothetical protein	complement(979261..979389)	Campylobacter jejuni subsp. doylei 269.97	5389558
YP_001398200.1	CDS	JJD26997_1115	NC_009707.1	979361	979537	R	identified by glimmer; putative; hypothetical protein	complement(979361..979537)	Campylobacter jejuni subsp. doylei 269.97	5390050
YP_001398201.1	CDS	JJD26997_1116	NC_009707.1	979765	979995	R	hypothetical protein	complement(979765..979995)	Campylobacter jejuni subsp. doylei 269.97	5389599
YP_001398202.1	CDS	JJD26997_1117	NC_009707.1	980005	980298	R	identified by glimmer; putative; hypothetical protein	complement(980005..980298)	Campylobacter jejuni subsp. doylei 269.97	5390045
YP_001398203.1	CDS	JJD26997_1118	NC_009707.1	980336	980596	R	hypothetical protein	complement(980336..980596)	Campylobacter jejuni subsp. doylei 269.97	5389386
YP_001398204.1	CDS	JJD26997_1119	NC_009707.1	980587	980856	R	identified by glimmer; putative; hypothetical protein	complement(980587..980856)	Campylobacter jejuni subsp. doylei 269.97	5388820
YP_001398205.1	CDS	JJD26997_1120	NC_009707.1	981104	981274	R	identified by glimmer; putative; hypothetical protein	complement(981104..981274)	Campylobacter jejuni subsp. doylei 269.97	5389778
YP_001398206.1	CDS	JJD26997_1121	NC_009707.1	981673	981945	R	identified by glimmer; putative; hypothetical protein	complement(981673..981945)	Campylobacter jejuni subsp. doylei 269.97	5390230
YP_001398207.1	CDS	JJD26997_1122	NC_009707.1	982351	982794	D	identified by glimmer; putative; hypothetical protein	982351..982794	Campylobacter jejuni subsp. doylei 269.97	5389654
YP_001398208.1	CDS	JJD26997_1123	NC_009707.1	982848	983006	R	DNA/RNA non-specific endonuclease	complement(982848..983006)	Campylobacter jejuni subsp. doylei 269.97	5389760
YP_001398209.1	CDS	JJD26997_1124	NC_009707.1	983127	983846	R	identified by match to protein family HMM PF00717; putative phage repressor protein	complement(983127..983846)	Campylobacter jejuni subsp. doylei 269.97	5390053
YP_001398210.1	CDS	JJD26997_1125	NC_009707.1	983985	984194	D	hypothetical protein	983985..984194	Campylobacter jejuni subsp. doylei 269.97	5388885
YP_001398211.1	CDS	JJD26997_1128	NC_009707.1	985372	986022	D	hypothetical protein	985372..986022	Campylobacter jejuni subsp. doylei 269.97	5390486
YP_001398212.1	CDS	JJD26997_1129	NC_009707.1	986047	986430	D	identified by match to protein family HMM PF05866; crossover junction endodeoxyribonuclease RusA superfamily protein	986047..986430	Campylobacter jejuni subsp. doylei 269.97	5389603
YP_001398213.1	CDS	JJD26997_1130	NC_009707.1	986423	986794	D	hypothetical protein	986423..986794	Campylobacter jejuni subsp. doylei 269.97	5388638
YP_001398214.1	CDS	JJD26997_1131	NC_009707.1	986791	988083	D	putative terminase B protein	986791..988083	Campylobacter jejuni subsp. doylei 269.97	5388759
YP_001398215.1	CDS	JJD26997_1132	NC_009707.1	988073	988345	D	hypothetical protein	988073..988345	Campylobacter jejuni subsp. doylei 269.97	5388589
YP_001398216.1	CDS	JJD26997_1133	NC_009707.1	988326	989849	D	hypothetical protein	988326..989849	Campylobacter jejuni subsp. doylei 269.97	5390260
YP_001398217.1	CDS	JJD26997_1134	NC_009707.1	989836	990039	D	hypothetical protein	989836..990039	Campylobacter jejuni subsp. doylei 269.97	5389854
YP_001398218.1	CDS	JJD26997_1135	NC_009707.1	990029	990673	D	hypothetical protein	990029..990673	Campylobacter jejuni subsp. doylei 269.97	5389130
YP_001398219.1	CDS	JJD26997_1136	NC_009707.1	990684	991052	D	hypothetical protein	990684..991052	Campylobacter jejuni subsp. doylei 269.97	5390153
YP_001398220.1	CDS	JJD26997_1137	NC_009707.1	991138	992181	D	hypothetical protein	991138..992181	Campylobacter jejuni subsp. doylei 269.97	5389287
YP_001398221.1	CDS	JJD26997_1139	NC_009707.1	996315	996506	R	hypothetical protein	complement(996315..996506)	Campylobacter jejuni subsp. doylei 269.97	5388697
YP_001398222.1	CDS	JJD26997_1140	NC_009707.1	996938	997972	D	identified by glimmer; putative; hypothetical protein	996938..997972	Campylobacter jejuni subsp. doylei 269.97	5390018
YP_001398223.1	CDS	JJD26997_1141	NC_009707.1	997973	998374	D	identified by glimmer; putative; hypothetical protein	997973..998374	Campylobacter jejuni subsp. doylei 269.97	5389663
YP_001398224.1	CDS	JJD26997_1142	NC_009707.1	998352	998543	D	identified by glimmer; putative; hypothetical protein	998352..998543	Campylobacter jejuni subsp. doylei 269.97	5390057
YP_001398225.1	CDS	JJD26997_1143	NC_009707.1	998546	1000207	D	hypothetical protein	998546..1000207	Campylobacter jejuni subsp. doylei 269.97	5389313
YP_001398226.1	CDS	JJD26997_1144	NC_009707.1	1000526	1001734	D	identified by glimmer; putative; hypothetical protein	1000526..1001734	Campylobacter jejuni subsp. doylei 269.97	5389602
YP_001398227.1	CDS	JJD26997_1145	NC_009707.1	1001754	1001933	D	identified by glimmer; putative; hypothetical protein	1001754..1001933	Campylobacter jejuni subsp. doylei 269.97	5390461
YP_001398228.1	CDS	JJD26997_1146	NC_009707.1	1001946	1002452	D	hypothetical protein	1001946..1002452	Campylobacter jejuni subsp. doylei 269.97	5389551
YP_001398229.1	CDS	JJD26997_1147	NC_009707.1	1002495	1002989	D	identified by glimmer; putative; hypothetical protein	1002495..1002989	Campylobacter jejuni subsp. doylei 269.97	5389651
YP_001398230.1	CDS	JJD26997_1148	NC_009707.1	1002992	1003372	D	identified by match to protein family HMM PF07087; hypothetical protein	1002992..1003372	Campylobacter jejuni subsp. doylei 269.97	5388633
YP_001398231.1	CDS	JJD26997_1149	NC_009707.1	1003369	1003842	D	hypothetical protein	1003369..1003842	Campylobacter jejuni subsp. doylei 269.97	5388847
YP_001398232.1	CDS	JJD26997_1151	NC_009707.1	1004411	1004608	D	identified by glimmer; putative; hypothetical protein	1004411..1004608	Campylobacter jejuni subsp. doylei 269.97	5389157
YP_001398233.1	CDS	JJD26997_1152	NC_009707.1	1004601	1005077	D	identified by glimmer; putative; hypothetical protein	1004601..1005077	Campylobacter jejuni subsp. doylei 269.97	5390169
YP_001398234.1	CDS	JJD26997_1153	NC_009707.1	1005089	1006858	D	hypothetical protein	1005089..1006858	Campylobacter jejuni subsp. doylei 269.97	5389052
YP_001398235.1	CDS	JJD26997_1154	NC_009707.1	1007073	1009970	R	identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; autotransporter beta-domain-containing protein	complement(1007073..1009970)	Campylobacter jejuni subsp. doylei 269.97	5389294
YP_001398236.1	CDS	JJD26997_1155	NC_009707.1	1010767	1011147	R	hypothetical protein	complement(1010767..1011147)	Campylobacter jejuni subsp. doylei 269.97	5388848
YP_001398237.1	CDS	JJD26997_1163	NC_009707.1	1011949	1012734	R	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease	complement(1011949..1012734)	Campylobacter jejuni subsp. doylei 269.97	5390454
YP_001398238.1	CDS	JJD26997_1164	NC_009707.1	1012757	1013962	R	identified by match to protein family HMM PF02687; permease	complement(1012757..1013962)	Campylobacter jejuni subsp. doylei 269.97	5389897
YP_001398239.1	CDS	secA	NC_009707.1	1013959	1016547	R	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA	complement(1013959..1016547)	Campylobacter jejuni subsp. doylei 269.97	5389745
YP_001398240.1	CDS	lolA	NC_009707.1	1016662	1017156	D	participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein	1016662..1017156	Campylobacter jejuni subsp. doylei 269.97	5389736
YP_001398241.1	CDS	JJD26997_1166	NC_009707.1	1017153	1017887	R	hypothetical protein	complement(1017153..1017887)	Campylobacter jejuni subsp. doylei 269.97	5390529
YP_001398242.1	CDS	JJD26997_1169	NC_009707.1	1019289	1020623	D	putative lipoprotein	1019289..1020623	Campylobacter jejuni subsp. doylei 269.97	5389585
YP_001398243.1	CDS	JJD26997_1170	NC_009707.1	1020638	1021510	R	identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase	complement(1020638..1021510)	Campylobacter jejuni subsp. doylei 269.97	5389796
YP_001398244.1	CDS	JJD26997_1171	NC_009707.1	1021507	1022394	R	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein	complement(1021507..1022394)	Campylobacter jejuni subsp. doylei 269.97	5388659
YP_001398245.1	CDS	JJD26997_1172	NC_009707.1	1022391	1023368	R	identified by match to protein family HMM PF04371; peptidyl-arginine deiminase family protein	complement(1022391..1023368)	Campylobacter jejuni subsp. doylei 269.97	5388883
YP_001398246.1	CDS	JJD26997_1173	NC_009707.1	1023467	1023901	R	identified by match to protein family HMM PF03724; putative lipoprotein	complement(1023467..1023901)	Campylobacter jejuni subsp. doylei 269.97	5389636
YP_001398247.1	CDS	JJD26997_1178	NC_009707.1	1030062	1030391	R	methylated-DNA--protein-cysteine methyltransferase	complement(1030062..1030391)	Campylobacter jejuni subsp. doylei 269.97	5388724
YP_001398248.1	CDS	acnB	NC_009707.1	1030446	1032992	D	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	1030446..1032992	Campylobacter jejuni subsp. doylei 269.97	5389522
YP_001398249.1	CDS	JJD26997_1180	NC_009707.1	1033094	1034290	D	identified by match to protein family HMM PF00023; ankyrin repeat-containing protein	1033094..1034290	Campylobacter jejuni subsp. doylei 269.97	5389350
YP_001398250.1	CDS	JJD26997_1181	NC_009707.1	1034287	1035036	D	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase	1034287..1035036	Campylobacter jejuni subsp. doylei 269.97	5390380
YP_001398251.1	CDS	JJD26997_1182	NC_009707.1	1035033	1036766	D	identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein	1035033..1036766	Campylobacter jejuni subsp. doylei 269.97	5388959
YP_001398252.1	CDS	trmA	NC_009707.1	1036763	1037836	D	catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase	1036763..1037836	Campylobacter jejuni subsp. doylei 269.97	5389240
YP_001398253.1	CDS	JJD26997_1183	NC_009707.1	1037823	1038239	R	identified by match to protein family HMM PF04323; hypothetical protein	complement(1037823..1038239)	Campylobacter jejuni subsp. doylei 269.97	5390234
YP_001398254.1	CDS	JJD26997_1185	NC_009707.1	1038357	1038599	D	CoA-binding domain-containing protein	1038357..1038599	Campylobacter jejuni subsp. doylei 269.97	5390492
YP_001398255.1	CDS	ilvA	NC_009707.1	1038599	1039810	D	catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase	1038599..1039810	Campylobacter jejuni subsp. doylei 269.97	5389637
YP_001398256.1	CDS	truA	NC_009707.1	1039807	1040532	R	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A	complement(1039807..1040532)	Campylobacter jejuni subsp. doylei 269.97	5389670
YP_001398257.1	CDS	JJD26997_1188	NC_009707.1	1040529	1041554	R	identified by match to protein family HMM PF03739; hypothetical protein	complement(1040529..1041554)	Campylobacter jejuni subsp. doylei 269.97	5390432
YP_001398258.1	CDS	JJD26997_1189	NC_009707.1	1041554	1042330	R	identified by match to protein family HMM PF01478; match to protein family HMM PF06750; A24 family peptidase	complement(1041554..1042330)	Campylobacter jejuni subsp. doylei 269.97	5390281
YP_001398259.1	CDS	uppS	NC_009707.1	1042327	1042995	R	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase	complement(1042327..1042995)	Campylobacter jejuni subsp. doylei 269.97	5389272
YP_001398260.1	CDS	JJD26997_1191	NC_009707.1	1042999	1043610	R	hypothetical protein	complement(1042999..1043610)	Campylobacter jejuni subsp. doylei 269.97	5390552
YP_001398261.1	CDS	coaBC	NC_009707.1	1043613	1044767	R	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase	complement(1043613..1044767)	Campylobacter jejuni subsp. doylei 269.97	5388840
YP_001398262.1	CDS	glmU	NC_009707.1	1044764	1046053	R	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase	complement(1044764..1046053)	Campylobacter jejuni subsp. doylei 269.97	5388849
YP_001398263.1	CDS	fliP	NC_009707.1	1046196	1046930	D	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP	1046196..1046930	Campylobacter jejuni subsp. doylei 269.97	5390507
YP_001398264.1	CDS	JJD26997_1194	NC_009707.1	1046927	1047139	R	hypothetical protein	complement(1046927..1047139)	Campylobacter jejuni subsp. doylei 269.97	5388649
YP_001398265.1	CDS	JJD26997_1196	NC_009707.1	1047495	1048265	R	identified by match to protein family HMM PF00497; amino acid-binding protein	complement(1047495..1048265)	Campylobacter jejuni subsp. doylei 269.97	5390082
YP_001398266.1	CDS	kdsB	NC_009707.1	1048319	1049032	R	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase	complement(1048319..1049032)	Campylobacter jejuni subsp. doylei 269.97	5389136
YP_001398267.1	CDS	thrC	NC_009707.1	1049029	1050441	R	catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase	complement(1049029..1050441)	Campylobacter jejuni subsp. doylei 269.97	5389436
YP_001398268.1	CDS	lpxK	NC_009707.1	1050438	1051364	R	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase	complement(1050438..1051364)	Campylobacter jejuni subsp. doylei 269.97	5390075
YP_001398269.1	CDS	nadE	NC_009707.1	1051368	1052108	R	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase	complement(1051368..1052108)	Campylobacter jejuni subsp. doylei 269.97	5389724
YP_001398270.1	CDS	JJD26997_1201	NC_009707.1	1052182	1052778	D	identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein	1052182..1052778	Campylobacter jejuni subsp. doylei 269.97	5390400
YP_001398271.1	CDS	JJD26997_1202	NC_009707.1	1052791	1053096	D	identified by glimmer; putative; hypothetical protein	1052791..1053096	Campylobacter jejuni subsp. doylei 269.97	5390029
YP_001398272.1	CDS	JJD26997_1203	NC_009707.1	1053137	1053916	R	Acts on the hydroxyl group at position 7 of the steroid frame; 7-alpha-hydroxysteroid dehydrogenase	complement(1053137..1053916)	Campylobacter jejuni subsp. doylei 269.97	5390249
YP_001398273.1	CDS	dapA	NC_009707.1	1053916	1054812	R	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase	complement(1053916..1054812)	Campylobacter jejuni subsp. doylei 269.97	5390176
YP_001398274.1	CDS	JJD26997_1205	NC_009707.1	1054805	1056055	R	identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase	complement(1054805..1056055)	Campylobacter jejuni subsp. doylei 269.97	5390332
YP_001398275.1	CDS	pyrD	NC_009707.1	1056052	1057110	R	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2	complement(1056052..1057110)	Campylobacter jejuni subsp. doylei 269.97	5390062
YP_001398276.1	CDS	JJD26997_1207	NC_009707.1	1057142	1058884	R	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; putative ABC transporter ATP-binding protein/permease MsbA	complement(1057142..1058884)	Campylobacter jejuni subsp. doylei 269.97	5389457
YP_001398277.1	CDS	cysS	NC_009707.1	1058877	1060265	R	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase	complement(1058877..1060265)	Campylobacter jejuni subsp. doylei 269.97	5390513
YP_001398278.1	CDS	mviN	NC_009707.1	1060265	1061716	R	identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN	complement(1060265..1061716)	Campylobacter jejuni subsp. doylei 269.97	5390013
YP_001398279.1	CDS	JJD26997_1210	NC_009707.1	1061820	1063679	D	hypothetical protein	1061820..1063679	Campylobacter jejuni subsp. doylei 269.97	5388823
YP_001398280.1	CDS	ruvA	NC_009707.1	1063655	1064206	D	plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA	1063655..1064206	Campylobacter jejuni subsp. doylei 269.97	5389794
YP_001398281.1	CDS	ddl	NC_009707.1	1064216	1065256	D	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A	1064216..1065256	Campylobacter jejuni subsp. doylei 269.97	5389898
YP_001398282.1	CDS	JJD26997_1213	NC_009707.1	1065316	1065531	D	identified by match to protein family HMM TIGR01552; prevent-host-death family protein	1065316..1065531	Campylobacter jejuni subsp. doylei 269.97	5388673
YP_001398283.1	CDS	JJD26997_1214	NC_009707.1	1065533	1066252	D	identified by match to protein family HMM PF00561; hypothetical protein	1065533..1066252	Campylobacter jejuni subsp. doylei 269.97	5390585
YP_001398284.1	CDS	JJD26997_1216	NC_009707.1	1066253	1067680	D	identified by match to protein family HMM PF08245; Mur ligase family protein	1066253..1067680	Campylobacter jejuni subsp. doylei 269.97	5389490
YP_001398285.1	CDS	JJD26997_1218	NC_009707.1	1068586	1069605	R	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase	complement(1068586..1069605)	Campylobacter jejuni subsp. doylei 269.97	5389698
YP_001398286.1	CDS	JJD26997_1219	NC_009707.1	1069609	1070430	R	identified by match to protein family HMM PF03008; hypothetical protein	complement(1069609..1070430)	Campylobacter jejuni subsp. doylei 269.97	5390415
YP_001398287.1	CDS	JJD26997_1221	NC_009707.1	1070529	1071797	D	identified by match to protein family HMM PF00266; aminotransferase	1070529..1071797	Campylobacter jejuni subsp. doylei 269.97	5390330
YP_001398288.1	CDS	purU	NC_009707.1	1071794	1072618	R	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase	complement(1071794..1072618)	Campylobacter jejuni subsp. doylei 269.97	5389566
YP_001398289.1	CDS	JJD26997_1222	NC_009707.1	1072615	1073733	R	identified by match to protein family HMM PF01743; polyA polymerase family protein	complement(1072615..1073733)	Campylobacter jejuni subsp. doylei 269.97	5389142
YP_001398290.1	CDS	JJD26997_1223	NC_009707.1	1073702	1074193	R	hypothetical protein	complement(1073702..1074193)	Campylobacter jejuni subsp. doylei 269.97	5389535
YP_001398291.1	CDS	JJD26997_1224	NC_009707.1	1074190	1074435	R	hypothetical protein	complement(1074190..1074435)	Campylobacter jejuni subsp. doylei 269.97	5388811
YP_001398292.1	CDS	JJD26997_1225	NC_009707.1	1074517	1074690	R	identified by glimmer; putative; hypothetical protein	complement(1074517..1074690)	Campylobacter jejuni subsp. doylei 269.97	5389107
YP_001398293.1	CDS	napD	NC_009707.1	1074704	1075042	R	napD protein	complement(1074704..1075042)	Campylobacter jejuni subsp. doylei 269.97	5389258
YP_001398294.1	CDS	tpx	NC_009707.1	1077714	1078241	R	identified by match to protein family HMM PF00578; match to protein family HMM PF08534; thiol peroxidase	complement(1077714..1078241)	Campylobacter jejuni subsp. doylei 269.97	5388971
YP_001398295.1	CDS	JJD26997_1235	NC_009707.1	1079070	1081100	R	identified by match to protein family HMM PF00580; putative ATP-dependent DNA helicase	complement(1079070..1081100)	Campylobacter jejuni subsp. doylei 269.97	5388864
YP_001398296.1	CDS	JJD26997_1236	NC_009707.1	1081228	1082184	D	hypothetical protein	1081228..1082184	Campylobacter jejuni subsp. doylei 269.97	5389996
YP_001398297.1	CDS	valS	NC_009707.1	1082208	1084820	D	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase	1082208..1084820	Campylobacter jejuni subsp. doylei 269.97	5389692
YP_001398298.1	CDS	JJD26997_1238	NC_009707.1	1084825	1085835	D	identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein	1084825..1085835	Campylobacter jejuni subsp. doylei 269.97	5390282
YP_001398299.1	CDS	JJD26997_1239	NC_009707.1	1085832	1086743	D	identified by match to protein family HMM PF00528; ABC transporter permease	1085832..1086743	Campylobacter jejuni subsp. doylei 269.97	5389719
YP_001398300.1	CDS	JJD26997_1240	NC_009707.1	1086936	1087709	D	identified by match to protein family HMM PF03180; NLPA family lipoprotein	1086936..1087709	Campylobacter jejuni subsp. doylei 269.97	5389134
YP_001398301.1	CDS	JJD26997_1241	NC_009707.1	1087758	1088528	D	identified by match to protein family HMM PF03180; NLPA family lipoprotein	1087758..1088528	Campylobacter jejuni subsp. doylei 269.97	5388781
YP_001398302.1	CDS	JJD26997_1242	NC_009707.1	1088538	1089314	D	identified by match to protein family HMM PF03180; NLPA family lipoprotein	1088538..1089314	Campylobacter jejuni subsp. doylei 269.97	5389185
YP_001398303.1	CDS	flgA	NC_009707.1	1089398	1090060	D	required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA	1089398..1090060	Campylobacter jejuni subsp. doylei 269.97	5389451
YP_001398304.1	CDS	JJD26997_1244	NC_009707.1	1090057	1090620	D	catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	1090057..1090620	Campylobacter jejuni subsp. doylei 269.97	5389115
YP_001398305.1	CDS	coaD	NC_009707.1	1090660	1091136	D	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase	1090660..1091136	Campylobacter jejuni subsp. doylei 269.97	5389125
YP_001398306.1	CDS	tmk	NC_009707.1	1091127	1091705	D	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase	1091127..1091705	Campylobacter jejuni subsp. doylei 269.97	5389326
YP_001398307.1	CDS	hisS	NC_009707.1	1091702	1092928	D	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase	1091702..1092928	Campylobacter jejuni subsp. doylei 269.97	5389304
YP_001398308.1	CDS	speA	NC_009707.1	1092928	1094760	D	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase	1092928..1094760	Campylobacter jejuni subsp. doylei 269.97	5389574
YP_001398309.1	CDS	cysE	NC_009707.1	1094761	1095399	D	identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase	1094761..1095399	Campylobacter jejuni subsp. doylei 269.97	5389872
YP_001398310.1	CDS	JJD26997_1250	NC_009707.1	1095560	1096729	D	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase	1095560..1096729	Campylobacter jejuni subsp. doylei 269.97	5389968
YP_001398311.1	CDS	JJD26997_1251	NC_009707.1	1096735	1097523	D	identified by match to protein family HMM TIGR01444; FkbM family methyltransferase	1096735..1097523	Campylobacter jejuni subsp. doylei 269.97	5390247
YP_001398312.1	CDS	JJD26997_1252	NC_009707.1	1097547	1097888	R	hypothetical protein	complement(1097547..1097888)	Campylobacter jejuni subsp. doylei 269.97	5389628
YP_001398313.1	CDS	JJD26997_1254	NC_009707.1	1098325	1099566	R	identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISHa1675 transposase B	complement(1098325..1099566)	Campylobacter jejuni subsp. doylei 269.97	5389328
YP_001398314.1	CDS	dnaK	NC_009707.1	1101178	1103049	R	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK	complement(1101178..1103049)	Campylobacter jejuni subsp. doylei 269.97	5390542
YP_001398315.1	CDS	grpE	NC_009707.1	1103071	1103601	R	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE	complement(1103071..1103601)	Campylobacter jejuni subsp. doylei 269.97	5390193
YP_001398316.1	CDS	JJD26997_1260	NC_009707.1	1103598	1104320	R	Acts as a negative regulator of the grpE-dnaK-dnaJ and groELS class I heat shock operons by preventing heat-shock induction; heat-inducible transcription repressor	complement(1103598..1104320)	Campylobacter jejuni subsp. doylei 269.97	5389919
YP_001398317.1	CDS	cfrA	NC_009707.1	1104614	1106722	R	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; ferric receptor CfrA	complement(1104614..1106722)	Campylobacter jejuni subsp. doylei 269.97	5389486
YP_001398318.1	CDS	JJD26997_1262	NC_009707.1	1107040	1107747	D	identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; protein TonB	1107040..1107747	Campylobacter jejuni subsp. doylei 269.97	5389720
YP_001398319.1	CDS	JJD26997_1265	NC_009707.1	1111481	1111597	R	identified by glimmer; putative; hypothetical protein	complement(1111481..1111597)	Campylobacter jejuni subsp. doylei 269.97	5390144
YP_001398320.1	CDS	JJD26997_1266	NC_009707.1	1111704	1112915	R	identified by match to protein family HMM PF07690; match to protein family HMM TIGR01272; L-fucose-proton symporter	complement(1111704..1112915)	Campylobacter jejuni subsp. doylei 269.97	5389227
YP_001398321.1	CDS	pgi	NC_009707.1	1112912	1114555	R	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase	complement(1112912..1114555)	Campylobacter jejuni subsp. doylei 269.97	5390467
YP_001398322.1	CDS	glk	NC_009707.1	1114565	1115563	R	catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase	complement(1114565..1115563)	Campylobacter jejuni subsp. doylei 269.97	5390520
YP_001398323.1	CDS	pgl	NC_009707.1	1115544	1116224	R	identified by match to protein family HMM TIGR01198; 6-phosphogluconolactonase	complement(1115544..1116224)	Campylobacter jejuni subsp. doylei 269.97	5390522
YP_001398324.1	CDS	zwf	NC_009707.1	1116388	1117788	R	identified by match to protein family HMM PF00479; match to protein family HMM PF02781; match to protein family HMM TIGR00871; glucose-6-phosphate 1-dehydrogenase	complement(1116388..1117788)	Campylobacter jejuni subsp. doylei 269.97	5389916
YP_001398325.1	CDS	edd	NC_009707.1	1117937	1119739	D	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase	1117937..1119739	Campylobacter jejuni subsp. doylei 269.97	5389907
YP_001398326.1	CDS	JJD26997_1272	NC_009707.1	1119749	1120372	D	identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182; KHG/KDPG aldolase	1119749..1120372	Campylobacter jejuni subsp. doylei 269.97	5388991
YP_001398327.1	CDS	JJD26997_1276	NC_009707.1	1122802	1122969	D	identified by glimmer; putative; hypothetical protein	1122802..1122969	Campylobacter jejuni subsp. doylei 269.97	5389104
YP_001398328.1	CDS	cjaC	NC_009707.1	1122953	1123708	D	identified by match to protein family HMM PF00497; cjaC protein	1122953..1123708	Campylobacter jejuni subsp. doylei 269.97	5389575
YP_001398329.1	CDS	JJD26997_1279	NC_009707.1	1127232	1128986	D	identified by match to protein family HMM PF07719; hypothetical protein	1127232..1128986	Campylobacter jejuni subsp. doylei 269.97	5390265
YP_001398330.1	CDS	corA	NC_009707.1	1129100	1130083	D	identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383; magnesium and cobalt transport protein CorA	1129100..1130083	Campylobacter jejuni subsp. doylei 269.97	5388601
YP_001398331.1	CDS	mogA	NC_009707.1	1130104	1130646	D	forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA	1130104..1130646	Campylobacter jejuni subsp. doylei 269.97	5389242
YP_001398332.1	CDS	JJD26997_1281	NC_009707.1	1130643	1130828	R	identified by glimmer; putative; hypothetical protein	complement(1130643..1130828)	Campylobacter jejuni subsp. doylei 269.97	5388996
YP_001398333.1	CDS	JJD26997_1283	NC_009707.1	1130957	1132144	D	identified by match to protein family HMM PF01435; M48 family peptidase	1130957..1132144	Campylobacter jejuni subsp. doylei 269.97	5388908
YP_001398334.1	CDS	JJD26997_1284	NC_009707.1	1132141	1132956	D	identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; HemK family modification methylase	1132141..1132956	Campylobacter jejuni subsp. doylei 269.97	5390104
YP_001398335.1	CDS	JJD26997_1285	NC_009707.1	1132969	1133439	D	hypothetical protein	1132969..1133439	Campylobacter jejuni subsp. doylei 269.97	5389059
YP_001398336.1	CDS	flaC	NC_009707.1	1133478	1134218	D	identified by match to protein family HMM PF00669; flagellin subunit protein FlaC	1133478..1134218	Campylobacter jejuni subsp. doylei 269.97	5389601
YP_001398337.1	CDS	JJD26997_1287	NC_009707.1	1134255	1134887	D	identified by match to protein family HMM TIGR00044; hypothetical protein	1134255..1134887	Campylobacter jejuni subsp. doylei 269.97	5390422
YP_001398338.1	CDS	dnaE	NC_009707.1	1134902	1138504	R	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha	complement(1134902..1138504)	Campylobacter jejuni subsp. doylei 269.97	5390069
YP_001398339.1	CDS	JJD26997_1289	NC_009707.1	1138954	1139283	R	identified by match to protein family HMM PF03960; hypothetical protein	complement(1138954..1139283)	Campylobacter jejuni subsp. doylei 269.97	5388594
YP_001398340.1	CDS	JJD26997_1290	NC_009707.1	1139280	1140620	R	identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358; 3-deoxy-7-phosphoheptulonate synthase	complement(1139280..1140620)	Campylobacter jejuni subsp. doylei 269.97	5390131
YP_001398341.1	CDS	rplS	NC_009707.1	1141191	1141547	R	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19	complement(1141191..1141547)	Campylobacter jejuni subsp. doylei 269.97	5389770
YP_001398342.1	CDS	trmD	NC_009707.1	1141558	1142262	R	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase	complement(1141558..1142262)	Campylobacter jejuni subsp. doylei 269.97	5388632
YP_001398343.1	CDS	rimM	NC_009707.1	1142259	1142798	R	identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273; 16S rRNA processing protein RimM	complement(1142259..1142798)	Campylobacter jejuni subsp. doylei 269.97	5389354
YP_001398344.1	CDS	JJD26997_1295	NC_009707.1	1142791	1143033	R	hypothetical protein	complement(1142791..1143033)	Campylobacter jejuni subsp. doylei 269.97	5388969
YP_001398345.1	CDS	rpsP	NC_009707.1	1143036	1143263	R	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16	complement(1143036..1143263)	Campylobacter jejuni subsp. doylei 269.97	5389493
YP_001398346.1	CDS	ffh	NC_009707.1	1143328	1144665	R	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein	complement(1143328..1144665)	Campylobacter jejuni subsp. doylei 269.97	5389398
YP_001398347.1	CDS	JJD26997_1298	NC_009707.1	1144733	1145485	R	identified by match to protein family HMM PF00849; RNA pseudouridine synthase family protein	complement(1144733..1145485)	Campylobacter jejuni subsp. doylei 269.97	5389160
YP_001398348.1	CDS	waaA	NC_009707.1	1145466	1146623	R	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase	complement(1145466..1146623)	Campylobacter jejuni subsp. doylei 269.97	5390207
YP_001398349.1	CDS	JJD26997_1300	NC_009707.1	1146620	1147336	R	identified by match to protein family HMM PF02591; hypothetical protein	complement(1146620..1147336)	Campylobacter jejuni subsp. doylei 269.97	5389976
YP_001398350.1	CDS	JJD26997_1301	NC_009707.1	1147346	1148071	R	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein	complement(1147346..1148071)	Campylobacter jejuni subsp. doylei 269.97	5389647
YP_001398351.1	CDS	glyQ	NC_009707.1	1148058	1148921	R	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha	complement(1148058..1148921)	Campylobacter jejuni subsp. doylei 269.97	5389994
YP_001398352.1	CDS	JJD26997_1303	NC_009707.1	1148933	1149469	R	hypothetical protein	complement(1148933..1149469)	Campylobacter jejuni subsp. doylei 269.97	5390092
YP_001398353.1	CDS	purE	NC_009707.1	1149479	1149973	R	identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit	complement(1149479..1149973)	Campylobacter jejuni subsp. doylei 269.97	5388994
YP_001398354.1	CDS	JJD26997_1305	NC_009707.1	1149974	1151227	R	identified by match to protein family HMM PF01136; U32 family peptidase	complement(1149974..1151227)	Campylobacter jejuni subsp. doylei 269.97	5389122
YP_001398355.1	CDS	JJD26997_1306	NC_009707.1	1151224	1151919	R	hypothetical protein	complement(1151224..1151919)	Campylobacter jejuni subsp. doylei 269.97	5389360
YP_001398356.1	CDS	glnA	NC_009707.1	1152108	1153538	D	identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I	1152108..1153538	Campylobacter jejuni subsp. doylei 269.97	5389042
YP_001398357.1	CDS	flgG	NC_009707.1	1153606	1154397	R	makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG	complement(1153606..1154397)	Campylobacter jejuni subsp. doylei 269.97	5388661
YP_001398358.1	CDS	JJD26997_1309	NC_009707.1	1154426	1155238	R	identified by match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar basal-body rod protein	complement(1154426..1155238)	Campylobacter jejuni subsp. doylei 269.97	5390160
YP_001398359.1	CDS	ftsZ	NC_009707.1	1155394	1156506	R	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ	complement(1155394..1156506)	Campylobacter jejuni subsp. doylei 269.97	5390541
YP_001398360.1	CDS	ftsA	NC_009707.1	1156522	1157904	R	identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA	complement(1156522..1157904)	Campylobacter jejuni subsp. doylei 269.97	5390124
YP_001398361.1	CDS	JJD26997_1312	NC_009707.1	1157907	1159397	R	peptidyl-prolyl cis-trans isomerase D-like protein	complement(1157907..1159397)	Campylobacter jejuni subsp. doylei 269.97	5388889
YP_001398362.1	CDS	mraW	NC_009707.1	1159562	1160494	D	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW	1159562..1160494	Campylobacter jejuni subsp. doylei 269.97	5388828
YP_001398363.1	CDS	JJD26997_1315	NC_009707.1	1160494	1161360	D	hypothetical protein	1160494..1161360	Campylobacter jejuni subsp. doylei 269.97	5389554
YP_001398364.1	CDS	JJD26997_1314	NC_009707.1	1161348	1161839	R	hypothetical protein	complement(1161348..1161839)	Campylobacter jejuni subsp. doylei 269.97	5389396
YP_001398365.1	CDS	ackA	NC_009707.1	1165767	1166957	R	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase	complement(1165767..1166957)	Campylobacter jejuni subsp. doylei 269.97	5388911
YP_001398366.1	CDS	pta	NC_009707.1	1166971	1168506	R	identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651; phosphate acetyltransferase	complement(1166971..1168506)	Campylobacter jejuni subsp. doylei 269.97	5388758
YP_001398367.1	CDS	flgH	NC_009707.1	1168567	1169265	D	part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein	1168567..1169265	Campylobacter jejuni subsp. doylei 269.97	5388995
YP_001398368.1	CDS	ispG	NC_009707.1	1169295	1170368	R	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	complement(1169295..1170368)	Campylobacter jejuni subsp. doylei 269.97	5390300
YP_001398369.1	CDS	priA	NC_009707.1	1170434	1172287	R	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA	complement(1170434..1172287)	Campylobacter jejuni subsp. doylei 269.97	5388897
YP_001398370.1	CDS	JJD26997_1323	NC_009707.1	1172269	1172706	R	identified by glimmer; putative; hypothetical protein	complement(1172269..1172706)	Campylobacter jejuni subsp. doylei 269.97	5389163
YP_001398371.1	CDS	JJD26997_1324	NC_009707.1	1172703	1172945	R	hypothetical protein	complement(1172703..1172945)	Campylobacter jejuni subsp. doylei 269.97	5388871
YP_001398372.1	CDS	JJD26997_1325	NC_009707.1	1172935	1173165	R	hypothetical protein	complement(1172935..1173165)	Campylobacter jejuni subsp. doylei 269.97	5389470
YP_001398373.1	CDS	uvrB	NC_009707.1	1173322	1175295	D	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B	1173322..1175295	Campylobacter jejuni subsp. doylei 269.97	5389632
YP_001398374.1	CDS	rpoN	NC_009707.1	1175791	1177041	R	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54	complement(1175791..1177041)	Campylobacter jejuni subsp. doylei 269.97	5389221
YP_001398375.1	CDS	JJD26997_1330	NC_009707.1	1177041	1177778	R	identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein	complement(1177041..1177778)	Campylobacter jejuni subsp. doylei 269.97	5390597
YP_001398376.1	CDS	JJD26997_1331	NC_009707.1	1177762	1178169	R	identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein	complement(1177762..1178169)	Campylobacter jejuni subsp. doylei 269.97	5390540
YP_001398377.1	CDS	JJD26997_1332	NC_009707.1	1178166	1178411	R	identified by match to protein family HMM PF01479; S4 domain-containing protein	complement(1178166..1178411)	Campylobacter jejuni subsp. doylei 269.97	5390312
YP_001398378.1	CDS	JJD26997_1333	NC_009707.1	1178442	1178570	D	identified by glimmer; putative; hypothetical protein	1178442..1178570	Campylobacter jejuni subsp. doylei 269.97	5390233
YP_001398379.1	CDS	argG	NC_009707.1	1178567	1179787	D	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase	1178567..1179787	Campylobacter jejuni subsp. doylei 269.97	5388595
YP_001398380.1	CDS	rplI	NC_009707.1	1179800	1180243	D	in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9	1179800..1180243	Campylobacter jejuni subsp. doylei 269.97	5389369
YP_001398381.1	CDS	hslV	NC_009707.1	1180243	1180785	D	heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit	1180243..1180785	Campylobacter jejuni subsp. doylei 269.97	5389966
YP_001398382.1	CDS	hslU	NC_009707.1	1180782	1182101	D	heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU	1180782..1182101	Campylobacter jejuni subsp. doylei 269.97	5389578
YP_001398383.1	CDS	era	NC_009707.1	1182098	1182973	D	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era	1182098..1182973	Campylobacter jejuni subsp. doylei 269.97	5390299
YP_001398384.1	CDS	JJD26997_1339	NC_009707.1	1182963	1184066	D	hypothetical protein	1182963..1184066	Campylobacter jejuni subsp. doylei 269.97	5389845
YP_001398385.1	CDS	JJD26997_1340	NC_009707.1	1184059	1184607	D	identified by glimmer; putative; hypothetical protein	1184059..1184607	Campylobacter jejuni subsp. doylei 269.97	5389591
YP_001398386.1	CDS	JJD26997_1341	NC_009707.1	1184815	1184940	R	identified by glimmer; putative; hypothetical protein	complement(1184815..1184940)	Campylobacter jejuni subsp. doylei 269.97	5388778
YP_001398387.1	CDS	JJD26997_1344	NC_009707.1	1185708	1187231	D	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; di-/tripeptide transporter	1185708..1187231	Campylobacter jejuni subsp. doylei 269.97	5388802
YP_001398388.1	CDS	JJD26997_1345	NC_009707.1	1187234	1188784	D	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; di-/tripeptide transporter	1187234..1188784	Campylobacter jejuni subsp. doylei 269.97	5389403
YP_001398389.1	CDS	JJD26997_1346	NC_009707.1	1188800	1190590	D	identified by match to protein family HMM PF00557; match to protein family HMM PF01321; M24 family peptidase	1188800..1190590	Campylobacter jejuni subsp. doylei 269.97	5389438
YP_001398390.1	CDS	pbpC	NC_009707.1	1190674	1192479	R	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2	complement(1190674..1192479)	Campylobacter jejuni subsp. doylei 269.97	5389084
YP_001398391.1	CDS	JJD26997_1348	NC_009707.1	1192480	1192974	R	hypothetical protein	complement(1192480..1192974)	Campylobacter jejuni subsp. doylei 269.97	5388797
YP_001398392.1	CDS	engB	NC_009707.1	1192971	1193570	R	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC	complement(1192971..1193570)	Campylobacter jejuni subsp. doylei 269.97	5390600
YP_001398393.1	CDS	JJD26997_1350	NC_009707.1	1193567	1194028	R	identified by match to protein family HMM PF03968; OstA family protein	complement(1193567..1194028)	Campylobacter jejuni subsp. doylei 269.97	5389660
YP_001398394.1	CDS	JJD26997_1351	NC_009707.1	1194010	1194444	R	identified by match to protein family HMM PF06835; hypothetical protein	complement(1194010..1194444)	Campylobacter jejuni subsp. doylei 269.97	5389038
YP_001398395.1	CDS	JJD26997_1352	NC_009707.1	1194516	1195004	R	identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670; YrbI family phosphatase	complement(1194516..1195004)	Campylobacter jejuni subsp. doylei 269.97	5390006
YP_001398396.1	CDS	rlpA	NC_009707.1	1195010	1195837	R	identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein A	complement(1195010..1195837)	Campylobacter jejuni subsp. doylei 269.97	5389699
YP_001398397.1	CDS	JJD26997_1354	NC_009707.1	1195797	1196915	R	identified by match to protein family HMM PF01464; match to protein family HMM PF01476; putative membrane-bound lytic murein transglycosylase D	complement(1195797..1196915)	Campylobacter jejuni subsp. doylei 269.97	5390388
YP_001398398.1	CDS	JJD26997_1355	NC_009707.1	1196915	1197730	R	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase	complement(1196915..1197730)	Campylobacter jejuni subsp. doylei 269.97	5389972
YP_001398399.1	CDS	JJD26997_1356	NC_009707.1	1197721	1198965	R	identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator/GGDEF domain-containing protein	complement(1197721..1198965)	Campylobacter jejuni subsp. doylei 269.97	5390056
YP_001398400.1	CDS	recN	NC_009707.1	1199068	1200591	R	identified by match to protein family HMM PF02463; DNA repair protein RecN	complement(1199068..1200591)	Campylobacter jejuni subsp. doylei 269.97	5389569
YP_001398401.1	CDS	pnk	NC_009707.1	1200591	1201451	R	catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase	complement(1200591..1201451)	Campylobacter jejuni subsp. doylei 269.97	5389434
YP_001398402.1	CDS	aspS	NC_009707.1	1201542	1203293	D	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase	1201542..1203293	Campylobacter jejuni subsp. doylei 269.97	5388732
YP_001398403.1	CDS	adk	NC_009707.1	1203290	1203868	D	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase	1203290..1203868	Campylobacter jejuni subsp. doylei 269.97	5389866
YP_001398404.1	CDS	ppa	NC_009707.1	1203878	1204396	D	identified by match to protein family HMM PF00719; inorganic pyrophosphatase	1203878..1204396	Campylobacter jejuni subsp. doylei 269.97	5390259
YP_001398405.1	CDS	msrA	NC_009707.1	1204440	1204937	D	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A	1204440..1204937	Campylobacter jejuni subsp. doylei 269.97	5390154
YP_001398406.1	CDS	JJD26997_1364	NC_009707.1	1205487	1205876	R	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein	complement(1205487..1205876)	Campylobacter jejuni subsp. doylei 269.97	5390224
YP_001398407.1	CDS	dprA	NC_009707.1	1205873	1206646	R	identified by match to protein family HMM PF02481; DNA processing protein A	complement(1205873..1206646)	Campylobacter jejuni subsp. doylei 269.97	5389195
YP_001398408.1	CDS	JJD26997_1366	NC_009707.1	1206636	1207259	R	identified by match to protein family HMM PF04748; hypothetical protein	complement(1206636..1207259)	Campylobacter jejuni subsp. doylei 269.97	5390582
YP_001398409.1	CDS	ilvC	NC_009707.1	1207263	1208285	R	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase	complement(1207263..1208285)	Campylobacter jejuni subsp. doylei 269.97	5390166
YP_001398410.1	CDS	JJD26997_1368	NC_009707.1	1208404	1210338	D	identified by match to protein family HMM PF00773; match to protein family HMM PF08206; RNB-like protein	1208404..1210338	Campylobacter jejuni subsp. doylei 269.97	5390267
YP_001398411.1	CDS	JJD26997_1369	NC_009707.1	1210331	1211296	D	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta	1210331..1211296	Campylobacter jejuni subsp. doylei 269.97	5388727
YP_001398412.1	CDS	JJD26997_1370	NC_009707.1	1211544	1214411	R	identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; autotransporter beta-domain-containing protein	complement(1211544..1214411)	Campylobacter jejuni subsp. doylei 269.97	5389095
YP_001398413.1	CDS	dnaB	NC_009707.1	1215045	1216427	R	unwinds double stranded DNA; replicative DNA helicase	complement(1215045..1216427)	Campylobacter jejuni subsp. doylei 269.97	5389193
YP_001398414.1	CDS	JJD26997_1372	NC_009707.1	1216518	1217453	R	identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase family protein	complement(1216518..1217453)	Campylobacter jejuni subsp. doylei 269.97	5389547
YP_001398415.1	CDS	JJD26997_1373	NC_009707.1	1217460	1217582	R	identified by glimmer; putative; hypothetical protein	complement(1217460..1217582)	Campylobacter jejuni subsp. doylei 269.97	5389051
YP_001398416.1	CDS	JJD26997_1375	NC_009707.1	1217628	1218713	D	hypothetical protein	1217628..1218713	Campylobacter jejuni subsp. doylei 269.97	5389877
YP_001398417.1	CDS	JJD26997_1374	NC_009707.1	1218710	1218958	R	hypothetical protein	complement(1218710..1218958)	Campylobacter jejuni subsp. doylei 269.97	5390068
YP_001398418.1	CDS	JJD26997_1376	NC_009707.1	1219008	1220012	R	hypothetical protein	complement(1219008..1220012)	Campylobacter jejuni subsp. doylei 269.97	5389541
YP_001398419.1	CDS	JJD26997_1377	NC_009707.1	1220022	1220975	R	identified by match to protein family HMM PF06166; hypothetical protein	complement(1220022..1220975)	Campylobacter jejuni subsp. doylei 269.97	5390551
YP_001398420.1	CDS	JJD26997_1378	NC_009707.1	1220962	1221654	R	identified by match to protein family HMM PF06149; hypothetical protein	complement(1220962..1221654)	Campylobacter jejuni subsp. doylei 269.97	5389817
YP_001398421.1	CDS	efp	NC_009707.1	1221811	1222380	R	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P	complement(1221811..1222380)	Campylobacter jejuni subsp. doylei 269.97	5389799
YP_001398422.1	CDS	JJD26997_1380	NC_009707.1	1222812	1223003	R	identified by glimmer; putative; hypothetical protein	complement(1222812..1223003)	Campylobacter jejuni subsp. doylei 269.97	5389316
YP_001398423.1	CDS	fliS	NC_009707.1	1223068	1223454	R	flagellin specific chaperone; flagellar protein FliS	complement(1223068..1223454)	Campylobacter jejuni subsp. doylei 269.97	5389888
YP_001398424.1	CDS	fliD	NC_009707.1	1223466	1225406	R	Also called hook-associated protein 2; involved in flagellin assembly; flagellar capping protein	complement(1223466..1225406)	Campylobacter jejuni subsp. doylei 269.97	5390298
YP_001398425.1	CDS	flaG	NC_009707.1	1225409	1225774	R	possibly involved in flagella export; flagellar protein FlaG	complement(1225409..1225774)	Campylobacter jejuni subsp. doylei 269.97	5388910
YP_001398426.1	CDS	JJD26997_1384	NC_009707.1	1225922	1227724	R	identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	complement(1225922..1227724)	Campylobacter jejuni subsp. doylei 269.97	5389497
YP_001398427.1	CDS	hemC	NC_009707.1	1227721	1228644	R	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase	complement(1227721..1228644)	Campylobacter jejuni subsp. doylei 269.97	5390583
YP_001398428.1	CDS	JJD26997_1386	NC_009707.1	1228641	1229030	R	hypothetical protein	complement(1228641..1229030)	Campylobacter jejuni subsp. doylei 269.97	5389971
YP_001398429.1	CDS	proS	NC_009707.1	1229027	1230736	R	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase	complement(1229027..1230736)	Campylobacter jejuni subsp. doylei 269.97	5388650
YP_001398430.1	CDS	hemA	NC_009707.1	1230720	1232018	R	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase	complement(1230720..1232018)	Campylobacter jejuni subsp. doylei 269.97	5389600
YP_001398431.1	CDS	JJD26997_1389	NC_009707.1	1232018	1232911	R	identified by match to protein family HMM PF00348; polyprenyl synthetase family protein	complement(1232018..1232911)	Campylobacter jejuni subsp. doylei 269.97	5390434
YP_001398432.1	CDS	JJD26997_1390	NC_009707.1	1232924	1233460	R	hypothetical protein	complement(1232924..1233460)	Campylobacter jejuni subsp. doylei 269.97	5390179
YP_001398433.1	CDS	JJD26997_1391	NC_009707.1	1233463	1233726	R	identified by glimmer; putative; hypothetical protein	complement(1233463..1233726)	Campylobacter jejuni subsp. doylei 269.97	5389932
YP_001398434.1	CDS	oorC	NC_009707.1	1233864	1234421	R	identified by match to protein family HMM PF01558; 2-oxoglutarate-acceptor oxidoreductase subunit OorC	complement(1233864..1234421)	Campylobacter jejuni subsp. doylei 269.97	5389595
YP_001398435.1	CDS	oorB	NC_009707.1	1234418	1235263	R	identified by match to protein family HMM PF02775; 2-oxoglutarate-acceptor oxidoreductase subunit OorB	complement(1234418..1235263)	Campylobacter jejuni subsp. doylei 269.97	5389061
YP_001398436.1	CDS	oorA	NC_009707.1	1235264	1236388	R	identified by match to protein family HMM PF01855; 2-oxoglutarate-acceptor oxidoreductase subunit OorA	complement(1235264..1236388)	Campylobacter jejuni subsp. doylei 269.97	5389173
YP_001398437.1	CDS	oorD	NC_009707.1	1236397	1236708	R	identified by match to protein family HMM PF00037; 2-oxoglutarate-acceptor oxidoreductase subunit OorD	complement(1236397..1236708)	Campylobacter jejuni subsp. doylei 269.97	5389835
YP_001398438.1	CDS	sucD	NC_009707.1	1236721	1237590	R	identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthase subunit alpha	complement(1236721..1237590)	Campylobacter jejuni subsp. doylei 269.97	5390430
YP_001398439.1	CDS	sucC	NC_009707.1	1237600	1238763	R	catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta	complement(1237600..1238763)	Campylobacter jejuni subsp. doylei 269.97	5390024
YP_001398440.1	CDS	mdh	NC_009707.1	1238764	1239666	R	identified by match to protein family HMM PF00056; match to protein family HMM PF02866; malate dehydrogenase	complement(1238764..1239666)	Campylobacter jejuni subsp. doylei 269.97	5388821
YP_001398441.1	CDS	icd	NC_009707.1	1239663	1241966	R	identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178; isocitrate dehydrogenase	complement(1239663..1241966)	Campylobacter jejuni subsp. doylei 269.97	5388967
YP_001398442.1	CDS	JJD26997_1400	NC_009707.1	1241984	1244515	R	hypothetical protein	complement(1241984..1244515)	Campylobacter jejuni subsp. doylei 269.97	5388928
YP_001398443.1	CDS	JJD26997_1401	NC_009707.1	1244382	1245470	D	identified by match to protein family HMM PF02618; hypothetical protein	1244382..1245470	Campylobacter jejuni subsp. doylei 269.97	5389216
YP_001398444.1	CDS	flgB	NC_009707.1	1245551	1245982	D	with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB	1245551..1245982	Campylobacter jejuni subsp. doylei 269.97	5389083
YP_001398445.1	CDS	flgC	NC_009707.1	1245992	1246486	D	with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC	1245992..1246486	Campylobacter jejuni subsp. doylei 269.97	5389448
YP_001398446.1	CDS	fliE	NC_009707.1	1246493	1246786	D	forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE	1246493..1246786	Campylobacter jejuni subsp. doylei 269.97	5388631
YP_001398447.1	CDS	JJD26997_1406	NC_009707.1	1246793	1248601	D	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein	1246793..1248601	Campylobacter jejuni subsp. doylei 269.97	5389612
YP_001398448.1	CDS	JJD26997_1411	NC_009707.1	1250350	1250784	R	identified by glimmer; putative; hypothetical protein	complement(1250350..1250784)	Campylobacter jejuni subsp. doylei 269.97	5390483
YP_001398449.1	CDS	JJD26997_1412	NC_009707.1	1250784	1251101	R	hypothetical protein	complement(1250784..1251101)	Campylobacter jejuni subsp. doylei 269.97	5388606
YP_001398450.1	CDS	htpG	NC_009707.1	1251098	1252924	R	molecular chaperone; heat shock protein 90	complement(1251098..1252924)	Campylobacter jejuni subsp. doylei 269.97	5389077
YP_001398451.1	CDS	JJD26997_1416	NC_009707.1	1254030	1255139	R	hypothetical protein	complement(1254030..1255139)	Campylobacter jejuni subsp. doylei 269.97	5389867
YP_001398452.1	CDS	purQ	NC_009707.1	1255223	1255870	R	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I	complement(1255223..1255870)	Campylobacter jejuni subsp. doylei 269.97	5389999
YP_001398453.1	CDS	purS	NC_009707.1	1255872	1256117	R	identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, purS protein	complement(1255872..1256117)	Campylobacter jejuni subsp. doylei 269.97	5390527
YP_001398454.1	CDS	purC	NC_009707.1	1256126	1256836	R	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase	complement(1256126..1256836)	Campylobacter jejuni subsp. doylei 269.97	5388717
YP_001398455.1	CDS	ctpA	NC_009707.1	1256838	1258172	R	identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease	complement(1256838..1258172)	Campylobacter jejuni subsp. doylei 269.97	5389633
YP_001398456.1	CDS	JJD26997_1421	NC_009707.1	1258291	1258581	D	identified by match to protein family HMM PF02583; hypothetical protein	1258291..1258581	Campylobacter jejuni subsp. doylei 269.97	5389548
YP_001398457.1	CDS	clpB	NC_009707.1	1258693	1261272	D	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; ATP-dependent chaperone protein ClpB	1258693..1261272	Campylobacter jejuni subsp. doylei 269.97	5390076
YP_001398458.1	CDS	JJD26997_1424	NC_009707.1	1263150	1263443	D	hypothetical protein	1263150..1263443	Campylobacter jejuni subsp. doylei 269.97	5389226
YP_001398459.1	CDS	JJD26997_1425	NC_009707.1	1263445	1264176	D	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; NAD dependent epimerase/dehydratase family protein	1263445..1264176	Campylobacter jejuni subsp. doylei 269.97	5389520
YP_001398460.1	CDS	JJD26997_1426	NC_009707.1	1264169	1265518	D	identified by match to protein family HMM PF00501; AMP-dependent synthetase and ligase	1264169..1265518	Campylobacter jejuni subsp. doylei 269.97	5390382
YP_001398461.1	CDS	JJD26997_1427	NC_009707.1	1265531	1267462	R	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A	complement(1265531..1267462)	Campylobacter jejuni subsp. doylei 269.97	5389474
YP_001398462.1	CDS	JJD26997_1428	NC_009707.1	1267459	1268010	R	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein	complement(1267459..1268010)	Campylobacter jejuni subsp. doylei 269.97	5388786
YP_001398463.1	CDS	alaS	NC_009707.1	1268010	1270538	R	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase	complement(1268010..1270538)	Campylobacter jejuni subsp. doylei 269.97	5388938
YP_001398464.1	CDS	JJD26997_1430	NC_009707.1	1270653	1271726	D	identified by match to protein family HMM PF01041; match to protein family HMM PF01053; DegT/DnrJ/EryC1/StrS aminotransferase family protein	1270653..1271726	Campylobacter jejuni subsp. doylei 269.97	5388816
YP_001398465.1	CDS	JJD26997_1431	NC_009707.1	1271731	1272597	D	identified by match to protein family HMM PF01408; Gfo/Idh/MocA family oxidoreductase	1271731..1272597	Campylobacter jejuni subsp. doylei 269.97	5388989
YP_001398466.1	CDS	hemH	NC_009707.1	1272594	1273505	D	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase	1272594..1273505	Campylobacter jejuni subsp. doylei 269.97	5389075
YP_001398467.1	CDS	JJD26997_1432	NC_009707.1	1273498	1273749	R	ammonium transporter	complement(1273498..1273749)	Campylobacter jejuni subsp. doylei 269.97	5390562
YP_001398468.1	CDS	ybbB	NC_009707.1	1273907	1274905	R	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase	complement(1273907..1274905)	Campylobacter jejuni subsp. doylei 269.97	5390209
YP_001398469.1	CDS	JJD26997_1435	NC_009707.1	1274895	1275380	R	identified by match to protein family HMM PF01230; Hit family protein	complement(1274895..1275380)	Campylobacter jejuni subsp. doylei 269.97	5389255
YP_001398470.1	CDS	trpC	NC_009707.1	1275390	1276166	R	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase	complement(1275390..1276166)	Campylobacter jejuni subsp. doylei 269.97	5389426
YP_001398471.1	CDS	JJD26997_1437	NC_009707.1	1276153	1277427	R	putative lipoprotein	complement(1276153..1277427)	Campylobacter jejuni subsp. doylei 269.97	5389475
YP_001398472.1	CDS	JJD26997_1438	NC_009707.1	1277412	1277786	R	identified by match to protein family HMM PF03692; hypothetical protein	complement(1277412..1277786)	Campylobacter jejuni subsp. doylei 269.97	5390123
YP_001398473.1	CDS	JJD26997_1439	NC_009707.1	1277776	1278477	R	identified by match to protein family HMM PF05175; hypothetical protein	complement(1277776..1278477)	Campylobacter jejuni subsp. doylei 269.97	5388714
YP_001398474.1	CDS	JJD26997_1440	NC_009707.1	1278483	1278632	R	identified by glimmer; putative; hypothetical protein	complement(1278483..1278632)	Campylobacter jejuni subsp. doylei 269.97	5389781
YP_001398475.1	CDS	fusA	NC_009707.1	1278755	1280830	R	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G	complement(1278755..1280830)	Campylobacter jejuni subsp. doylei 269.97	5390344
YP_001398476.1	CDS	rpsG	NC_009707.1	1280843	1281313	R	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7	complement(1280843..1281313)	Campylobacter jejuni subsp. doylei 269.97	5388665
YP_001398477.1	CDS	rpsL	NC_009707.1	1281383	1281769	R	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12	complement(1281383..1281769)	Campylobacter jejuni subsp. doylei 269.97	5389384
YP_001398478.1	CDS	aldA	NC_009707.1	1282097	1283536	R	NAD-linked; aldehyde dehydrogenase A	complement(1282097..1283536)	Campylobacter jejuni subsp. doylei 269.97	5388621
YP_001398479.1	CDS	JJD26997_1446	NC_009707.1	1283550	1283867	R	identified by match to protein family HMM PF05336; hypothetical protein	complement(1283550..1283867)	Campylobacter jejuni subsp. doylei 269.97	5388907
YP_001398480.1	CDS	JJD26997_1447	NC_009707.1	1283868	1284638	R	identified by match to protein family HMM PF04909; hypothetical protein	complement(1283868..1284638)	Campylobacter jejuni subsp. doylei 269.97	5390446
YP_001398481.1	CDS	fucP	NC_009707.1	1284622	1285878	R	identified by match to protein family HMM PF07690; L-fucose permease	complement(1284622..1285878)	Campylobacter jejuni subsp. doylei 269.97	5390438
YP_001398482.1	CDS	JJD26997_1449	NC_009707.1	1285889	1286677	R	identified by match to protein family HMM PF00106; short chain dehydrogenase	complement(1285889..1286677)	Campylobacter jejuni subsp. doylei 269.97	5389906
YP_001398483.1	CDS	uxaA	NC_009707.1	1287609	1288775	R	identified by match to protein family HMM PF04295; altronate hydrolase	complement(1287609..1288775)	Campylobacter jejuni subsp. doylei 269.97	5389696
YP_001398484.1	CDS	JJD26997_1453	NC_009707.1	1289038	1289946	R	identified by match to protein family HMM PF00701; dihydrodipicolinate synthase	complement(1289038..1289946)	Campylobacter jejuni subsp. doylei 269.97	5390479
YP_001398485.1	CDS	JJD26997_1454	NC_009707.1	1290176	1290937	D	identified by match to protein family HMM PF01614; match to protein family HMM PF09339; IclR family transcriptional regulator	1290176..1290937	Campylobacter jejuni subsp. doylei 269.97	5389823
YP_001398486.1	CDS	rplL	NC_009707.1	1299759	1300136	R	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12	complement(1299759..1300136)	Campylobacter jejuni subsp. doylei 269.97	5389358
YP_001398487.1	CDS	rplJ	NC_009707.1	1300158	1300637	R	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10	complement(1300158..1300637)	Campylobacter jejuni subsp. doylei 269.97	5390484
YP_001398488.1	CDS	rplA	NC_009707.1	1300789	1301490	R	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1	complement(1300789..1301490)	Campylobacter jejuni subsp. doylei 269.97	5389277
YP_001398489.1	CDS	rplK	NC_009707.1	1301545	1301970	R	binds directly to 23S ribosomal RNA; 50S ribosomal protein L11	complement(1301545..1301970)	Campylobacter jejuni subsp. doylei 269.97	5388699
YP_001398490.1	CDS	nusG	NC_009707.1	1301996	1302529	R	Modulates Rho-dependent transcription termination; transcription antitermination protein NusG	complement(1301996..1302529)	Campylobacter jejuni subsp. doylei 269.97	5389417
YP_001398491.1	CDS	secE	NC_009707.1	1302539	1302718	R	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE	complement(1302539..1302718)	Campylobacter jejuni subsp. doylei 269.97	5390386
YP_001398492.1	CDS	rpmG	NC_009707.1	1302826	1302984	R	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33	complement(1302826..1302984)	Campylobacter jejuni subsp. doylei 269.97	5390409
YP_001398493.1	CDS	tuf	NC_009707.1	1303037	1304236	R	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu	complement(1303037..1304236)	Campylobacter jejuni subsp. doylei 269.97	5390220
YP_001398494.1	CDS	JJD26997_1470	NC_009707.1	1304894	1305631	R	identified by match to protein family HMM PF00005; amino acid ABC transporter, ATP-binding protein	complement(1304894..1305631)	Campylobacter jejuni subsp. doylei 269.97	5389366
YP_001398495.1	CDS	JJD26997_1471	NC_009707.1	1305633	1306289	R	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease	complement(1305633..1306289)	Campylobacter jejuni subsp. doylei 269.97	5390205
YP_001398496.1	CDS	JJD26997_1472	NC_009707.1	1306282	1306983	R	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease	complement(1306282..1306983)	Campylobacter jejuni subsp. doylei 269.97	5390133
YP_001398497.1	CDS	JJD26997_1473	NC_009707.1	1306999	1307595	R	identified by match to protein family HMM PF00027; putative transcriptional regulator	complement(1306999..1307595)	Campylobacter jejuni subsp. doylei 269.97	5390429
YP_001398498.1	CDS	JJD26997_1475	NC_009707.1	1307688	1308071	D	hypothetical protein	1307688..1308071	Campylobacter jejuni subsp. doylei 269.97	5389034
YP_001398499.1	CDS	recG	NC_009707.1	1308068	1309891	R	catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG	complement(1308068..1309891)	Campylobacter jejuni subsp. doylei 269.97	5389339
YP_001398500.1	CDS	JJD26997_1476	NC_009707.1	1309881	1311101	R	identified by match to protein family HMM PF05193; putative peptidase	complement(1309881..1311101)	Campylobacter jejuni subsp. doylei 269.97	5388957
YP_001398501.1	CDS	JJD26997_1477	NC_009707.1	1311101	1312147	R	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; hypothetical protein	complement(1311101..1312147)	Campylobacter jejuni subsp. doylei 269.97	5390178
YP_001398502.1	CDS	JJD26997_1478	NC_009707.1	1312221	1313408	D	identified by match to protein family HMM PF04332; match to protein family HMM PF07690; putative transporter	1312221..1313408	Campylobacter jejuni subsp. doylei 269.97	5390538
YP_001398503.1	CDS	nusA	NC_009707.1	1313424	1314512	R	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA	complement(1313424..1314512)	Campylobacter jejuni subsp. doylei 269.97	5389441
YP_001398504.1	CDS	JJD26997_1480	NC_009707.1	1314640	1314882	D	hypothetical protein	1314640..1314882	Campylobacter jejuni subsp. doylei 269.97	5389995
YP_001398505.1	CDS	miaB	NC_009707.1	1314879	1316180	D	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase	1314879..1316180	Campylobacter jejuni subsp. doylei 269.97	5389895
YP_001398506.1	CDS	JJD26997_1482	NC_009707.1	1316143	1316793	D	identified by match to protein family HMM PF04028; hypothetical protein	1316143..1316793	Campylobacter jejuni subsp. doylei 269.97	5389266
YP_001398507.1	CDS	JJD26997_1483	NC_009707.1	1316795	1317754	D	identified by glimmer; putative; hypothetical protein	1316795..1317754	Campylobacter jejuni subsp. doylei 269.97	5389056
YP_001398508.1	CDS	JJD26997_1484	NC_009707.1	1317751	1318278	D	hypothetical protein	1317751..1318278	Campylobacter jejuni subsp. doylei 269.97	5389714
YP_001398509.1	CDS	JJD26997_1486	NC_009707.1	1318268	1318786	D	identified by glimmer; putative; hypothetical protein	1318268..1318786	Campylobacter jejuni subsp. doylei 269.97	5388963
YP_001398510.1	CDS	thiC	NC_009707.1	1318778	1320070	R	required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC	complement(1318778..1320070)	Campylobacter jejuni subsp. doylei 269.97	5390534
YP_001398511.1	CDS	rpe	NC_009707.1	1321011	1321658	R	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase	complement(1321011..1321658)	Campylobacter jejuni subsp. doylei 269.97	5389532
YP_001398512.1	CDS	rpmB	NC_009707.1	1321800	1321994	D	required for 70S ribosome assembly; 50S ribosomal protein L28	1321800..1321994	Campylobacter jejuni subsp. doylei 269.97	5389905
YP_001398513.1	CDS	JJD26997_1490	NC_009707.1	1322179	1322394	D	identified by match to protein family HMM PF04325; hypothetical protein	1322179..1322394	Campylobacter jejuni subsp. doylei 269.97	5389303
YP_001398514.1	CDS	JJD26997_1492	NC_009707.1	1323529	1324125	R	identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; NUDIX domain-containing protein	complement(1323529..1324125)	Campylobacter jejuni subsp. doylei 269.97	5389085
YP_001398515.1	CDS	JJD26997_1493	NC_009707.1	1324206	1326299	R	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; putative TonB-dependent receptor	complement(1324206..1326299)	Campylobacter jejuni subsp. doylei 269.97	5388904
YP_001398516.1	CDS	accA	NC_009707.1	1326434	1327372	R	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha	complement(1326434..1327372)	Campylobacter jejuni subsp. doylei 269.97	5389044
YP_001398517.1	CDS	fabF	NC_009707.1	1327374	1328588	R	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II	complement(1327374..1328588)	Campylobacter jejuni subsp. doylei 269.97	5389381
YP_001398518.1	CDS	acpP	NC_009707.1	1328614	1328847	R	carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein	complement(1328614..1328847)	Campylobacter jejuni subsp. doylei 269.97	5388698
YP_001398519.1	CDS	JJD26997_1497	NC_009707.1	1328957	1329625	D	identified by match to protein family HMM PF03070; TenA/Thi-4 family protein	1328957..1329625	Campylobacter jejuni subsp. doylei 269.97	5390188
YP_001398520.1	CDS	JJD26997_1503	NC_009707.1	1331157	1331276	R	identified by glimmer; putative; hypothetical protein	complement(1331157..1331276)	Campylobacter jejuni subsp. doylei 269.97	5388807
YP_001398521.1	CDS	JJD26997_1508	NC_009707.1	1333585	1333992	R	identified by match to protein family HMM PF01243; hypothetical protein	complement(1333585..1333992)	Campylobacter jejuni subsp. doylei 269.97	5389156
YP_001398522.1	CDS	fabG	NC_009707.1	1334002	1334745	R	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase	complement(1334002..1334745)	Campylobacter jejuni subsp. doylei 269.97	5390472
YP_001398523.1	CDS	pgm	NC_009707.1	1334817	1336295	R	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase	complement(1334817..1336295)	Campylobacter jejuni subsp. doylei 269.97	5389771
YP_001398524.1	CDS	mraY	NC_009707.1	1336375	1337436	D	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase	1336375..1337436	Campylobacter jejuni subsp. doylei 269.97	5388634
YP_001398525.1	CDS	murD	NC_009707.1	1337436	1338644	D	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase	1337436..1338644	Campylobacter jejuni subsp. doylei 269.97	5390405
YP_001398526.1	CDS	JJD26997_1513	NC_009707.1	1338742	1339815	R	hypothetical protein	complement(1338742..1339815)	Campylobacter jejuni subsp. doylei 269.97	5389882
YP_001398527.1	CDS	JJD26997_1514	NC_009707.1	1339815	1341053	R	identified by match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02655; hypothetical protein	complement(1339815..1341053)	Campylobacter jejuni subsp. doylei 269.97	5389691
YP_001398528.1	CDS	JJD26997_1515	NC_009707.1	1341057	1341659	R	identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase domain-containing protein	complement(1341057..1341659)	Campylobacter jejuni subsp. doylei 269.97	5389114
YP_001398529.1	CDS	JJD26997_1516	NC_009707.1	1341643	1342140	R	identified by glimmer; putative; hypothetical protein	complement(1341643..1342140)	Campylobacter jejuni subsp. doylei 269.97	5389174
YP_001398530.1	CDS	JJD26997_1517	NC_009707.1	1342133	1343314	R	hypothetical protein	complement(1342133..1343314)	Campylobacter jejuni subsp. doylei 269.97	5389311
YP_001398531.1	CDS	JJD26997_1518	NC_009707.1	1343533	1343664	R	identified by glimmer; putative; hypothetical protein	complement(1343533..1343664)	Campylobacter jejuni subsp. doylei 269.97	5389030
YP_001398532.1	CDS	JJD26997_1521	NC_009707.1	1347962	1348078	R	identified by glimmer; putative; hypothetical protein	complement(1347962..1348078)	Campylobacter jejuni subsp. doylei 269.97	5390307
YP_001398533.1	CDS	JJD26997_1525	NC_009707.1	1350631	1351368	R	hypothetical protein	complement(1350631..1351368)	Campylobacter jejuni subsp. doylei 269.97	5389379
YP_001398534.1	CDS	JJD26997_1526	NC_009707.1	1351361	1352587	R	hypothetical protein	complement(1351361..1352587)	Campylobacter jejuni subsp. doylei 269.97	5388873
YP_001398535.1	CDS	JJD26997_1527	NC_009707.1	1352707	1353291	D	identified by match to protein family HMM PF01205; hypothetical protein	1352707..1353291	Campylobacter jejuni subsp. doylei 269.97	5390026
YP_001398536.1	CDS	JJD26997_1528	NC_009707.1	1353785	1354117	R	identified by glimmer; putative; hypothetical protein	complement(1353785..1354117)	Campylobacter jejuni subsp. doylei 269.97	5388800
YP_001398537.1	CDS	JJD26997_1529	NC_009707.1	1354110	1355687	R	identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein	complement(1354110..1355687)	Campylobacter jejuni subsp. doylei 269.97	5389387
YP_001398538.1	CDS	JJD26997_1530	NC_009707.1	1355810	1356259	R	putative lipoprotein	complement(1355810..1356259)	Campylobacter jejuni subsp. doylei 269.97	5389333
YP_001398539.1	CDS	JJD26997_1531	NC_009707.1	1356259	1356519	R	identified by glimmer; putative; hypothetical protein	complement(1356259..1356519)	Campylobacter jejuni subsp. doylei 269.97	5390323
YP_001398540.1	CDS	JJD26997_1533	NC_009707.1	1357353	1357472	R	identified by glimmer; putative; hypothetical protein	complement(1357353..1357472)	Campylobacter jejuni subsp. doylei 269.97	5389737
YP_001398541.1	CDS	JJD26997_1535	NC_009707.1	1357445	1358401	D	hypothetical protein	1357445..1358401	Campylobacter jejuni subsp. doylei 269.97	5388715
YP_001398542.1	CDS	JJD26997_1536	NC_009707.1	1358406	1358978	R	identified by match to protein family HMM PF04264; hypothetical protein	complement(1358406..1358978)	Campylobacter jejuni subsp. doylei 269.97	5389070
YP_001398543.1	CDS	JJD26997_1537	NC_009707.1	1359042	1359413	R	identified by match to protein family HMM PF01230; HIT family protein	complement(1359042..1359413)	Campylobacter jejuni subsp. doylei 269.97	5390588
YP_001398544.1	CDS	JJD26997_1538	NC_009707.1	1359519	1360223	D	hypothetical protein	1359519..1360223	Campylobacter jejuni subsp. doylei 269.97	5389241
YP_001398545.1	CDS	JJD26997_1544	NC_009707.1	1362363	1363067	R	identified by match to protein family HMM PF07719; match to protein family HMM PF08238; hypothetical protein	complement(1362363..1363067)	Campylobacter jejuni subsp. doylei 269.97	5388988
YP_001398546.1	CDS	JJD26997_1545	NC_009707.1	1363067	1364776	R	identified by match to protein family HMM PF00350; match to protein family HMM PF01926; GTP-binding protein	complement(1363067..1364776)	Campylobacter jejuni subsp. doylei 269.97	5388927
YP_001398547.1	CDS	JJD26997_1546	NC_009707.1	1364886	1367072	R	identified by match to protein family HMM PF00350; match to protein family HMM PF01926; GTP-binding protein	complement(1364886..1367072)	Campylobacter jejuni subsp. doylei 269.97	5389859
YP_001398548.1	CDS	frdB	NC_009707.1	1367100	1367825	R	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit	complement(1367100..1367825)	Campylobacter jejuni subsp. doylei 269.97	5389635
YP_001398549.1	CDS	frdA	NC_009707.1	1367818	1369809	R	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit	complement(1367818..1369809)	Campylobacter jejuni subsp. doylei 269.97	5388613
YP_001398550.1	CDS	frdC	NC_009707.1	1369793	1370575	R	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit	complement(1369793..1370575)	Campylobacter jejuni subsp. doylei 269.97	5388723
YP_001398551.1	CDS	lgt	NC_009707.1	1370644	1371459	R	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase	complement(1370644..1371459)	Campylobacter jejuni subsp. doylei 269.97	5390358
YP_001398552.1	CDS	JJD26997_1551	NC_009707.1	1371548	1372447	D	putative lipoprotein	1371548..1372447	Campylobacter jejuni subsp. doylei 269.97	5388742
YP_001398553.1	CDS	aroE	NC_009707.1	1372522	1373310	R	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase	complement(1372522..1373310)	Campylobacter jejuni subsp. doylei 269.97	5389045
YP_001398554.1	CDS	JJD26997_1553	NC_009707.1	1373307	1374143	R	identified by match to protein family HMM PF05036; hypothetical protein	complement(1373307..1374143)	Campylobacter jejuni subsp. doylei 269.97	5388818
YP_001398555.1	CDS	JJD26997_1554	NC_009707.1	1374157	1374702	R	identified by match to protein family HMM PF08966; hypothetical protein	complement(1374157..1374702)	Campylobacter jejuni subsp. doylei 269.97	5390406
YP_001398556.1	CDS	glyA	NC_009707.1	1374699	1375943	R	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase	complement(1374699..1375943)	Campylobacter jejuni subsp. doylei 269.97	5389716
YP_001398557.1	CDS	lysS	NC_009707.1	1375940	1377445	R	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase	complement(1375940..1377445)	Campylobacter jejuni subsp. doylei 269.97	5389363
YP_001398558.1	CDS	fur	NC_009707.1	1377446	1377919	R	identified by match to protein family HMM PF01475; ferric uptake regulation protein	complement(1377446..1377919)	Campylobacter jejuni subsp. doylei 269.97	5389433
YP_001398559.1	CDS	JJD26997_1558	NC_009707.1	1377913	1378485	R	identified by match to protein family HMM PF02674; cvpA family protein	complement(1377913..1378485)	Campylobacter jejuni subsp. doylei 269.97	5389003
YP_001398560.1	CDS	gatC	NC_009707.1	1378551	1378835	R	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C	complement(1378551..1378835)	Campylobacter jejuni subsp. doylei 269.97	5389727
YP_001398561.1	CDS	JJD26997_1560	NC_009707.1	1378978	1379556	D	hypothetical protein	1378978..1379556	Campylobacter jejuni subsp. doylei 269.97	5390054
YP_001398562.1	CDS	JJD26997_1561	NC_009707.1	1379553	1380551	D	putative lipoprotein	1379553..1380551	Campylobacter jejuni subsp. doylei 269.97	5389001
YP_001398563.1	CDS	JJD26997_1564	NC_009707.1	1380824	1381453	D	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase	1380824..1381453	Campylobacter jejuni subsp. doylei 269.97	5389544
YP_001398564.1	CDS	JJD26997_1565	NC_009707.1	1381572	1382918	D	identified by match to protein family HMM PF01266; match to protein family HMM PF06039; putative malate:quinone oxidoreductase	1381572..1382918	Campylobacter jejuni subsp. doylei 269.97	5390121
YP_001398565.1	CDS	pyk	NC_009707.1	1382967	1384409	D	identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase	1382967..1384409	Campylobacter jejuni subsp. doylei 269.97	5388704
YP_001398566.1	CDS	JJD26997_1567	NC_009707.1	1384507	1385142	D	hypothetical protein	1384507..1385142	Campylobacter jejuni subsp. doylei 269.97	5389925
YP_001398567.1	CDS	JJD26997_1568	NC_009707.1	1385173	1387635	R	identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein	complement(1385173..1387635)	Campylobacter jejuni subsp. doylei 269.97	5389557
YP_001398568.1	CDS	serS	NC_009707.1	1387645	1388880	R	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase	complement(1387645..1388880)	Campylobacter jejuni subsp. doylei 269.97	5388947
YP_001398569.1	CDS	trpS	NC_009707.1	1388891	1389850	R	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase	complement(1388891..1389850)	Campylobacter jejuni subsp. doylei 269.97	5389191
YP_001398570.1	CDS	aroK	NC_009707.1	1389847	1390344	R	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase	complement(1389847..1390344)	Campylobacter jejuni subsp. doylei 269.97	5389020
YP_001398571.1	CDS	engA	NC_009707.1	1390331	1391713	R	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA	complement(1390331..1391713)	Campylobacter jejuni subsp. doylei 269.97	5390526
YP_001398572.1	CDS	JJD26997_1573	NC_009707.1	1391814	1392746	D	identified by match to protein family HMM PF00892; integral membrane protein	1391814..1392746	Campylobacter jejuni subsp. doylei 269.97	5389723
YP_001398573.1	CDS	kdsA	NC_009707.1	1392743	1393546	D	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase	1392743..1393546	Campylobacter jejuni subsp. doylei 269.97	5389129
YP_001398574.1	CDS	ribH	NC_009707.1	1393556	1394020	D	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase	1393556..1394020	Campylobacter jejuni subsp. doylei 269.97	5388791
YP_001398575.1	CDS	nusB	NC_009707.1	1394020	1394418	D	Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB	1394020..1394418	Campylobacter jejuni subsp. doylei 269.97	5388671
YP_001398576.1	CDS	pyrF	NC_009707.1	1394415	1395095	D	type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase	1394415..1395095	Campylobacter jejuni subsp. doylei 269.97	5390275
YP_001398577.1	CDS	JJD26997_1578	NC_009707.1	1395150	1396043	D	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY	1395150..1396043	Campylobacter jejuni subsp. doylei 269.97	5388670
YP_001398578.1	CDS	JJD26997_1580	NC_009707.1	1396043	1396615	D	identified by match to protein family HMM PF01794; hypothetical protein	1396043..1396615	Campylobacter jejuni subsp. doylei 269.97	5389610
YP_001398579.1	CDS	JJD26997_1579	NC_009707.1	1396580	1398292	R	identified by match to protein family HMM PF00004; AAA ATPase	complement(1396580..1398292)	Campylobacter jejuni subsp. doylei 269.97	5390455
YP_001398580.1	CDS	JJD26997_1581	NC_009707.1	1398292	1399116	R	identified by glimmer; putative; hypothetical protein	complement(1398292..1399116)	Campylobacter jejuni subsp. doylei 269.97	5389743
YP_001398581.1	CDS	JJD26997_1582	NC_009707.1	1399127	1399603	R	putative lipoprotein	complement(1399127..1399603)	Campylobacter jejuni subsp. doylei 269.97	5390519
YP_001398582.1	CDS	JJD26997_1583	NC_009707.1	1399612	1400103	R	putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein	complement(1399612..1400103)	Campylobacter jejuni subsp. doylei 269.97	5389695
YP_001398583.1	CDS	JJD26997_1584	NC_009707.1	1400093	1401028	R	Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase	complement(1400093..1401028)	Campylobacter jejuni subsp. doylei 269.97	5390334
YP_001398584.1	CDS	JJD26997_1585	NC_009707.1	1401032	1402201	R	identified by match to protein family HMM PF03738; glutathionylspermidine synthase	complement(1401032..1402201)	Campylobacter jejuni subsp. doylei 269.97	5390569
YP_001398585.1	CDS	JJD26997_1586	NC_009707.1	1402211	1402816	R	hypothetical protein	complement(1402211..1402816)	Campylobacter jejuni subsp. doylei 269.97	5390468
YP_001398586.1	CDS	rpsU	NC_009707.1	1402932	1403144	R	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21	complement(1402932..1403144)	Campylobacter jejuni subsp. doylei 269.97	5389035
YP_001398587.1	CDS	JJD26997_1588	NC_009707.1	1403302	1404678	D	identified by match to protein family HMM PF00037; match to protein family HMM TIGR02745; iron-sulfur cluster-binding domain-containing protein	1403302..1404678	Campylobacter jejuni subsp. doylei 269.97	5389101
YP_001398588.1	CDS	JJD26997_1589	NC_009707.1	1404665	1405297	D	identified by match to protein family HMM PF00440; TetR family transcriptional regulator	1404665..1405297	Campylobacter jejuni subsp. doylei 269.97	5389735
YP_001398589.1	CDS	cmeA	NC_009707.1	1405392	1406495	D	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND efflux system, membrane fusion protein CmeA	1405392..1406495	Campylobacter jejuni subsp. doylei 269.97	5389297
YP_001398590.1	CDS	cmeB	NC_009707.1	1406495	1409617	D	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; RND efflux system, inner membrane transporter CmeB	1406495..1409617	Campylobacter jejuni subsp. doylei 269.97	5389007
YP_001398591.1	CDS	JJD26997_1593	NC_009707.1	1411110	1411361	R	identified by glimmer; putative; hypothetical protein	complement(1411110..1411361)	Campylobacter jejuni subsp. doylei 269.97	5388960
YP_001398592.1	CDS	JJD26997_1594	NC_009707.1	1412832	1413284	R	identified by match to protein family HMM PF03653; match to protein family HMM TIGR00701; hypothetical protein	complement(1412832..1413284)	Campylobacter jejuni subsp. doylei 269.97	5388747
YP_001398593.1	CDS	lspA	NC_009707.1	1413268	1413738	R	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase	complement(1413268..1413738)	Campylobacter jejuni subsp. doylei 269.97	5389512
YP_001398594.1	CDS	glmM	NC_009707.1	1413731	1415068	R	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase	complement(1413731..1415068)	Campylobacter jejuni subsp. doylei 269.97	5389453
YP_001398595.1	CDS	JJD26997_1601	NC_009707.1	1416360	1416968	D	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY	1416360..1416968	Campylobacter jejuni subsp. doylei 269.97	5390130
YP_001398596.1	CDS	JJD26997_1602	NC_009707.1	1416953	1417270	D	FolB domain-containing protein	1416953..1417270	Campylobacter jejuni subsp. doylei 269.97	5389351
YP_001398597.1	CDS	JJD26997_1603	NC_009707.1	1417348	1418019	D	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator	1417348..1418019	Campylobacter jejuni subsp. doylei 269.97	5390347
YP_001398598.1	CDS	JJD26997_1604	NC_009707.1	1418133	1418378	D	identified by match to protein family HMM PF00037; ferredoxin, 4Fe-4S	1418133..1418378	Campylobacter jejuni subsp. doylei 269.97	5390414
YP_001398599.1	CDS	JJD26997_1606	NC_009707.1	1418378	1419838	D	identified by match to protein family HMM PF02541; Ppx/GppA family phosphatase	1418378..1419838	Campylobacter jejuni subsp. doylei 269.97	5389870
YP_001398600.1	CDS	JJD26997_1605	NC_009707.1	1419822	1420601	R	hypothetical protein	complement(1419822..1420601)	Campylobacter jejuni subsp. doylei 269.97	5389829
YP_001398601.1	CDS	fliN	NC_009707.1	1420608	1420916	R	One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein	complement(1420608..1420916)	Campylobacter jejuni subsp. doylei 269.97	5388619
YP_001398602.1	CDS	trpA	NC_009707.1	1421407	1422156	R	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha	complement(1421407..1422156)	Campylobacter jejuni subsp. doylei 269.97	5389402
YP_001398603.1	CDS	trpB	NC_009707.1	1422149	1423327	R	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta	complement(1422149..1423327)	Campylobacter jejuni subsp. doylei 269.97	5389324
YP_001398604.1	CDS	trpF	NC_009707.1	1423324	1423923	R	identified by match to protein family HMM PF00697; N-(5'phosphoribosyl)anthranilate isomerase	complement(1423324..1423923)	Campylobacter jejuni subsp. doylei 269.97	5388789
YP_001398605.1	CDS	trpD	NC_009707.1	1423910	1425511	R	identified by match to protein family HMM PF00117; match to protein family HMM PF00591; match to protein family HMM TIGR00566; match to protein family HMM TIGR01245; anthranilate synthase component II	complement(1423910..1425511)	Campylobacter jejuni subsp. doylei 269.97	5389359
YP_001398606.1	CDS	trpE	NC_009707.1	1425508	1426758	R	identified by match to protein family HMM PF00425; anthranilate synthase component I	complement(1425508..1426758)	Campylobacter jejuni subsp. doylei 269.97	5390329
YP_001398607.1	CDS	JJD26997_1615	NC_009707.1	1426917	1427042	R	hypothetical protein	complement(1426917..1427042)	Campylobacter jejuni subsp. doylei 269.97	5390212
YP_001398608.1	CDS	JJD26997_1616	NC_009707.1	1427166	1427951	D	identified by match to protein family HMM PF01925; hypothetical protein	1427166..1427951	Campylobacter jejuni subsp. doylei 269.97	5389091
YP_001398609.1	CDS	uvrA	NC_009707.1	1428024	1430849	D	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A	1428024..1430849	Campylobacter jejuni subsp. doylei 269.97	5389271
YP_001398610.1	CDS	JJD26997_1618	NC_009707.1	1430854	1431297	D	identified by match to protein family HMM PF09335; hypothetical protein	1430854..1431297	Campylobacter jejuni subsp. doylei 269.97	5390023
YP_001398611.1	CDS	polA	NC_009707.1	1433150	1435789	D	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I	1433150..1435789	Campylobacter jejuni subsp. doylei 269.97	5389149
YP_001398612.1	CDS	JJD26997_1621	NC_009707.1	1435805	1436581	D	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA	1435805..1436581	Campylobacter jejuni subsp. doylei 269.97	5388764
YP_001398613.1	CDS	motB	NC_009707.1	1436584	1437327	D	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB	1436584..1437327	Campylobacter jejuni subsp. doylei 269.97	5389571
YP_001398614.1	CDS	flhB	NC_009707.1	1437333	1438421	R	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB	complement(1437333..1438421)	Campylobacter jejuni subsp. doylei 269.97	5389282
YP_001398615.1	CDS	JJD26997_1624	NC_009707.1	1438538	1439134	R	identified by match to protein family HMM PF00578; match to protein family HMM PF08534; anti-oxidant AhpCTSA family protein	complement(1438538..1439134)	Campylobacter jejuni subsp. doylei 269.97	5390221
YP_001398616.1	CDS	JJD26997_1625	NC_009707.1	1439340	1439624	D	identified by match to protein family HMM PF00037; ferredoxin, 4Fe-4S	1439340..1439624	Campylobacter jejuni subsp. doylei 269.97	5390528
YP_001398617.1	CDS	ndk	NC_009707.1	1439738	1440151	D	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase	1439738..1440151	Campylobacter jejuni subsp. doylei 269.97	5388953
YP_001398618.1	CDS	JJD26997_1627	NC_009707.1	1440152	1440505	D	hypothetical protein	1440152..1440505	Campylobacter jejuni subsp. doylei 269.97	5389586
YP_001398619.1	CDS	rpmF	NC_009707.1	1440530	1440676	D	some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32	1440530..1440676	Campylobacter jejuni subsp. doylei 269.97	5389352
YP_001398620.1	CDS	plsX	NC_009707.1	1440682	1441668	D	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX	1440682..1441668	Campylobacter jejuni subsp. doylei 269.97	5389175
YP_001398621.1	CDS	fabH	NC_009707.1	1441661	1442635	D	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase	1441661..1442635	Campylobacter jejuni subsp. doylei 269.97	5389865
YP_001398622.1	CDS	JJD26997_1633	NC_009707.1	1442801	1442947	D	identified by glimmer; putative; hypothetical protein	1442801..1442947	Campylobacter jejuni subsp. doylei 269.97	5389312
YP_001398623.1	CDS	serC	NC_009707.1	1442929	1444005	R	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase	complement(1442929..1444005)	Campylobacter jejuni subsp. doylei 269.97	5389749
YP_001398624.1	CDS	xseA	NC_009707.1	1444015	1445178	R	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit	complement(1444015..1445178)	Campylobacter jejuni subsp. doylei 269.97	5388835
YP_001398625.1	CDS	JJD26997_1635	NC_009707.1	1445187	1445309	R	identified by glimmer; putative; hypothetical protein	complement(1445187..1445309)	Campylobacter jejuni subsp. doylei 269.97	5388769
YP_001398626.1	CDS	JJD26997_1636	NC_009707.1	1445309	1446274	D	identified by match to protein family HMM PF03401; TctC protein	1445309..1446274	Campylobacter jejuni subsp. doylei 269.97	5390185
YP_001398627.1	CDS	JJD26997_1637	NC_009707.1	1446281	1446718	D	TctB protein	1446281..1446718	Campylobacter jejuni subsp. doylei 269.97	5389718
YP_001398628.1	CDS	JJD26997_1639	NC_009707.1	1446727	1448223	D	identified by match to protein family HMM PF01970; tricarboxylic transport	1446727..1448223	Campylobacter jejuni subsp. doylei 269.97	5390350
YP_001398629.1	CDS	ubiE	NC_009707.1	1448204	1448911	R	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase	complement(1448204..1448911)	Campylobacter jejuni subsp. doylei 269.97	5390157
YP_001398630.1	CDS	JJD26997_1640	NC_009707.1	1448914	1450110	R	hypothetical protein	complement(1448914..1450110)	Campylobacter jejuni subsp. doylei 269.97	5390385
YP_001398631.1	CDS	JJD26997_1641	NC_009707.1	1450155	1450565	R	identified by match to protein family HMM PF01475; FUR family transcriptional regulator	complement(1450155..1450565)	Campylobacter jejuni subsp. doylei 269.97	5390271
YP_001398632.1	CDS	dxs	NC_009707.1	1450651	1452498	R	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase	complement(1450651..1452498)	Campylobacter jejuni subsp. doylei 269.97	5388642
YP_001398633.1	CDS	fliH	NC_009707.1	1452491	1453321	R	binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H	complement(1452491..1453321)	Campylobacter jejuni subsp. doylei 269.97	5390449
YP_001398634.1	CDS	fliG	NC_009707.1	1453329	1454357	R	One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G	complement(1453329..1454357)	Campylobacter jejuni subsp. doylei 269.97	5389675
YP_001398635.1	CDS	fliF	NC_009707.1	1454357	1456039	R	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein	complement(1454357..1456039)	Campylobacter jejuni subsp. doylei 269.97	5390477
YP_001398636.1	CDS	hisC	NC_009707.1	1456094	1457188	R	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase	complement(1456094..1457188)	Campylobacter jejuni subsp. doylei 269.97	5389256
YP_001398637.1	CDS	pheA	NC_009707.1	1457178	1458251	R	identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807; chorismate mutase/prephenate dehydratase	complement(1457178..1458251)	Campylobacter jejuni subsp. doylei 269.97	5389184
YP_001398638.1	CDS	JJD26997_1648	NC_009707.1	1458239	1459006	R	identified by match to protein family HMM TIGR01460; HAD family hydrolase	complement(1458239..1459006)	Campylobacter jejuni subsp. doylei 269.97	5390198
YP_001398639.1	CDS	JJD26997_1649	NC_009707.1	1459009	1459626	R	identified by glimmer; putative; hypothetical protein	complement(1459009..1459626)	Campylobacter jejuni subsp. doylei 269.97	5389097
YP_001398640.1	CDS	JJD26997_1650	NC_009707.1	1459623	1460864	R	identified by match to protein family HMM PF01555; modification methylase BslI	complement(1459623..1460864)	Campylobacter jejuni subsp. doylei 269.97	5390105
YP_001398641.1	CDS	lysA	NC_009707.1	1460866	1462074	R	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase	complement(1460866..1462074)	Campylobacter jejuni subsp. doylei 269.97	5390114
YP_001398642.1	CDS	JJD26997_1652	NC_009707.1	1462118	1463176	R	identified by match to protein family HMM PF03739; hypothetical protein	complement(1462118..1463176)	Campylobacter jejuni subsp. doylei 269.97	5388777
YP_001398643.1	CDS	pth	NC_009707.1	1463178	1463723	R	Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase	complement(1463178..1463723)	Campylobacter jejuni subsp. doylei 269.97	5390343
YP_001398644.1	CDS	rplY	NC_009707.1	1463720	1464256	R	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc	complement(1463720..1464256)	Campylobacter jejuni subsp. doylei 269.97	5389400
YP_001398645.1	CDS	JJD26997_1655	NC_009707.1	1464390	1464728	D	identified by match to protein family HMM PF00893; SMR family multidrug efflux pump	1464390..1464728	Campylobacter jejuni subsp. doylei 269.97	5389076
YP_001398646.1	CDS	JJD26997_1656	NC_009707.1	1464730	1465044	D	identified by match to protein family HMM PF00893; SMR family multidrug efflux pump	1464730..1465044	Campylobacter jejuni subsp. doylei 269.97	5390304
YP_001398647.1	CDS	bioD	NC_009707.1	1465054	1465659	D	dethiobiotin synthetase	1465054..1465659	Campylobacter jejuni subsp. doylei 269.97	5390143
YP_001398648.1	CDS	bioA	NC_009707.1	1465646	1466929	R	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase	complement(1465646..1466929)	Campylobacter jejuni subsp. doylei 269.97	5388766
YP_001398649.1	CDS	bioF	NC_009707.1	1466997	1468139	D	identified by match to protein family HMM PF00155; 8-amino-7-oxononanoate synthase	1466997..1468139	Campylobacter jejuni subsp. doylei 269.97	5389021
YP_001398650.1	CDS	JJD26997_1660	NC_009707.1	1468136	1468747	D	identified by match to protein family HMM PF04301; hypothetical protein	1468136..1468747	Campylobacter jejuni subsp. doylei 269.97	5388970
YP_001398651.1	CDS	JJD26997_1661	NC_009707.1	1468744	1469430	D	identified by match to protein family HMM PF08242; match to protein family HMM TIGR02072; biotin biosynthesis protein BioC	1468744..1469430	Campylobacter jejuni subsp. doylei 269.97	5390431
YP_001398652.1	CDS	JJD26997_1663	NC_009707.1	1470114	1470245	R	identified by glimmer; putative; hypothetical protein	complement(1470114..1470245)	Campylobacter jejuni subsp. doylei 269.97	5389597
YP_001398653.1	CDS	JJD26997_1664	NC_009707.1	1470303	1470626	D	identified by match to protein family HMM PF03459; tobe domain-containing protein	1470303..1470626	Campylobacter jejuni subsp. doylei 269.97	5389280
YP_001398654.1	CDS	panB	NC_009707.1	1471321	1472145	D	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase	1471321..1472145	Campylobacter jejuni subsp. doylei 269.97	5389757
YP_001398655.1	CDS	panC	NC_009707.1	1472156	1473004	D	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase	1472156..1473004	Campylobacter jejuni subsp. doylei 269.97	5389753
YP_001398656.1	CDS	panD	NC_009707.1	1473001	1473381	D	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase	1473001..1473381	Campylobacter jejuni subsp. doylei 269.97	5389018
YP_001398657.1	CDS	JJD26997_1669	NC_009707.1	1473455	1474105	R	identified by match to protein family HMM PF00899; thiF family protein	complement(1473455..1474105)	Campylobacter jejuni subsp. doylei 269.97	5390072
YP_001398658.1	CDS	surE	NC_009707.1	1474098	1474874	R	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE	complement(1474098..1474874)	Campylobacter jejuni subsp. doylei 269.97	5389853
YP_001398659.1	CDS	JJD26997_1674	NC_009707.1	1476272	1476412	D	glycerol-3-phosphate transporter	1476272..1476412	Campylobacter jejuni subsp. doylei 269.97	5390112
YP_001398660.1	CDS	JJD26997_1679	NC_009707.1	1477665	1480127	D	identified by match to protein family HMM PF01555; adenine-specific DNA methylase	1477665..1480127	Campylobacter jejuni subsp. doylei 269.97	5388754
YP_001398661.1	CDS	JJD26997_1680	NC_009707.1	1480127	1480921	D	identified by glimmer; putative; hypothetical protein	1480127..1480921	Campylobacter jejuni subsp. doylei 269.97	5388838
YP_001398662.1	CDS	JJD26997_1681	NC_009707.1	1480923	1481417	D	identified by glimmer; putative; hypothetical protein	1480923..1481417	Campylobacter jejuni subsp. doylei 269.97	5388839
YP_001398663.1	CDS	JJD26997_1682	NC_009707.1	1481539	1484382	D	identified by match to protein family HMM PF04851; putative type III restriction enzyme R protein	1481539..1484382	Campylobacter jejuni subsp. doylei 269.97	5389713
YP_001398664.1	CDS	lpxB	NC_009707.1	1484379	1485473	D	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; ipid-A-disaccharide synthase	1484379..1485473	Campylobacter jejuni subsp. doylei 269.97	5389684
YP_001398665.1	CDS	greA	NC_009707.1	1485485	1485970	D	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA	1485485..1485970	Campylobacter jejuni subsp. doylei 269.97	5388810
YP_001398666.1	CDS	JJD26997_1685	NC_009707.1	1486104	1486739	D	hypothetical protein	1486104..1486739	Campylobacter jejuni subsp. doylei 269.97	5389505
YP_001398667.1	CDS	cheV	NC_009707.1	1486732	1487688	D	identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV	1486732..1487688	Campylobacter jejuni subsp. doylei 269.97	5389894
YP_001398668.1	CDS	cheA	NC_009707.1	1487692	1490001	D	identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis protein CheA	1487692..1490001	Campylobacter jejuni subsp. doylei 269.97	5390191
YP_001398669.1	CDS	cheW	NC_009707.1	1490006	1490527	D	identified by match to protein family HMM PF01584; purine-binding chemotaxis protein CheW	1490006..1490527	Campylobacter jejuni subsp. doylei 269.97	5389508
YP_001398670.1	CDS	serB	NC_009707.1	1490527	1491150	D	identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB	1490527..1491150	Campylobacter jejuni subsp. doylei 269.97	5388664
YP_001398671.1	CDS	tal	NC_009707.1	1491150	1492127	D	Important for the balance of metabolites in the pentose-phosphate pathway; transaldolase	1491150..1492127	Campylobacter jejuni subsp. doylei 269.97	5390163
YP_001398672.1	CDS	JJD26997_1691	NC_009707.1	1492128	1492550	R	hypothetical protein	complement(1492128..1492550)	Campylobacter jejuni subsp. doylei 269.97	5388977
YP_001398673.1	CDS	carB	NC_009707.1	1492547	1495816	R	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit	complement(1492547..1495816)	Campylobacter jejuni subsp. doylei 269.97	5388798
YP_001398674.1	CDS	JJD26997_1693	NC_009707.1	1496077	1496826	R	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC	complement(1496077..1496826)	Campylobacter jejuni subsp. doylei 269.97	5388917
YP_001398675.1	CDS	mreB	NC_009707.1	1496816	1497856	R	functions in MreBCD complex in some organisms; rod shape-determining protein MreB	complement(1496816..1497856)	Campylobacter jejuni subsp. doylei 269.97	5389466
YP_001398676.1	CDS	clpX	NC_009707.1	1497868	1499088	R	binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX	complement(1497868..1499088)	Campylobacter jejuni subsp. doylei 269.97	5388990
YP_001398677.1	CDS	lpxA	NC_009707.1	1499081	1499872	R	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase	complement(1499081..1499872)	Campylobacter jejuni subsp. doylei 269.97	5390203
YP_001398678.1	CDS	fabZ	NC_009707.1	1499872	1500312	R	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase	complement(1499872..1500312)	Campylobacter jejuni subsp. doylei 269.97	5390128
YP_001398679.1	CDS	JJD26997_1698	NC_009707.1	1500403	1501494	R	identified by match to protein family HMM PF02677; hypothetical protein	complement(1500403..1501494)	Campylobacter jejuni subsp. doylei 269.97	5389262
YP_001398680.1	CDS	JJD26997_1699	NC_009707.1	1501494	1501949	R	identified by match to protein family HMM PF00578; match to protein family HMM PF08534; anti-oxidant AhpCTSA family protein	complement(1501494..1501949)	Campylobacter jejuni subsp. doylei 269.97	5389556
YP_001398681.1	CDS	JJD26997_1700	NC_009707.1	1501946	1502152	R	identified by match to protein family HMM PF01361; 4-oxalocrotonate tautomerase	complement(1501946..1502152)	Campylobacter jejuni subsp. doylei 269.97	5389050
YP_001398682.1	CDS	JJD26997_1701	NC_009707.1	1502340	1503437	D	identified by match to protein family HMM PF01497; periplasmic binding protein	1502340..1503437	Campylobacter jejuni subsp. doylei 269.97	5390342
YP_001398683.1	CDS	JJD26997_1702	NC_009707.1	1503434	1504528	D	identified by match to protein family HMM PF01497; periplasmic binding protein	1503434..1504528	Campylobacter jejuni subsp. doylei 269.97	5389423
YP_001398684.1	CDS	JJD26997_1703	NC_009707.1	1504518	1505576	D	identified by match to protein family HMM PF00950; match to protein family HMM PF01032; heme/hemin ABC transporter permease	1504518..1505576	Campylobacter jejuni subsp. doylei 269.97	5390306
YP_001398685.1	CDS	JJD26997_1704	NC_009707.1	1505563	1506339	D	identified by match to protein family HMM PF00005; cobalamin/Fe3+-siderophores ABC transporter ATPase	1505563..1506339	Campylobacter jejuni subsp. doylei 269.97	5388761
YP_001398686.1	CDS	JJD26997_1705	NC_009707.1	1506323	1506760	D	identified by match to protein family HMM PF00127; pseudoazurin	1506323..1506760	Campylobacter jejuni subsp. doylei 269.97	5389813
YP_001398687.1	CDS	JJD26997_1706	NC_009707.1	1506760	1507605	D	identified by match to protein family HMM PF08443; hypothetical protein	1506760..1507605	Campylobacter jejuni subsp. doylei 269.97	5390108
YP_001398688.1	CDS	ilvE	NC_009707.1	1507651	1508565	D	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase	1507651..1508565	Campylobacter jejuni subsp. doylei 269.97	5388954
YP_001398689.1	CDS	JJD26997_1708	NC_009707.1	1508579	1509667	D	identified by match to protein family HMM PF01145; SPFH domain-containing protein	1508579..1509667	Campylobacter jejuni subsp. doylei 269.97	5390407
YP_001398690.1	CDS	JJD26997_1709	NC_009707.1	1509700	1510209	D	hypothetical protein	1509700..1510209	Campylobacter jejuni subsp. doylei 269.97	5390008
YP_001398691.1	CDS	JJD26997_1710	NC_009707.1	1510209	1510718	D	hypothetical protein	1510209..1510718	Campylobacter jejuni subsp. doylei 269.97	5389291
YP_001398692.1	CDS	JJD26997_1711	NC_009707.1	1511673	1511876	R	identified by glimmer; putative; hypothetical protein	complement(1511673..1511876)	Campylobacter jejuni subsp. doylei 269.97	5389047
YP_001398693.1	CDS	JJD26997_1719	NC_009707.1	1514086	1514268	D	identified by glimmer; putative; hypothetical protein	1514086..1514268	Campylobacter jejuni subsp. doylei 269.97	5388891
YP_001398694.1	CDS	JJD26997_1720	NC_009707.1	1514444	1516438	D	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF05581; methyl-accepting chemotaxis protein	1514444..1516438	Campylobacter jejuni subsp. doylei 269.97	5389801
YP_001398695.1	CDS	JJD26997_1721	NC_009707.1	1516518	1517237	D	hypothetical protein	1516518..1517237	Campylobacter jejuni subsp. doylei 269.97	5389536
YP_001398696.1	CDS	pyrC	NC_009707.1	1517539	1518546	R	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase	complement(1517539..1518546)	Campylobacter jejuni subsp. doylei 269.97	5390139
YP_001398697.1	CDS	JJD26997_1723	NC_009707.1	1518536	1518781	R	identified by glimmer; putative; hypothetical protein	complement(1518536..1518781)	Campylobacter jejuni subsp. doylei 269.97	5389278
YP_001398698.1	CDS	dgkA	NC_009707.1	1518778	1519134	R	identified by match to protein family HMM PF01219; diacylglycerol kinase	complement(1518778..1519134)	Campylobacter jejuni subsp. doylei 269.97	5389353
YP_001398699.1	CDS	JJD26997_1725	NC_009707.1	1519131	1520669	R	identified by match to protein family HMM PF00884; match to protein family HMM PF08019; sulfatase	complement(1519131..1520669)	Campylobacter jejuni subsp. doylei 269.97	5389959
YP_001398700.1	CDS	JJD26997_1726	NC_009707.1	1520700	1521941	R	identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISHa1675 transposase B	complement(1520700..1521941)	Campylobacter jejuni subsp. doylei 269.97	5390028
YP_001398701.1	CDS	JJD26997_1728	NC_009707.1	1522588	1522701	D	hypothetical protein	1522588..1522701	Campylobacter jejuni subsp. doylei 269.97	5389924
YP_001398702.1	CDS	JJD26997_1733	NC_009707.1	1524521	1526014	R	identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; hydrogenase, (NiFe)/(NiFeSe) small subunit family	complement(1524521..1526014)	Campylobacter jejuni subsp. doylei 269.97	5389594
YP_001398703.1	CDS	fabI	NC_009707.1	1526018	1526842	R	Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase	complement(1526018..1526842)	Campylobacter jejuni subsp. doylei 269.97	5389259
YP_001398704.1	CDS	tpiA	NC_009707.1	1526846	1527517	R	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase	complement(1526846..1527517)	Campylobacter jejuni subsp. doylei 269.97	5389090
YP_001398705.1	CDS	pgk	NC_009707.1	1527514	1528716	R	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase	complement(1527514..1528716)	Campylobacter jejuni subsp. doylei 269.97	5389482
YP_001398706.1	CDS	gapA	NC_009707.1	1528726	1529718	R	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase A	complement(1528726..1529718)	Campylobacter jejuni subsp. doylei 269.97	5388912
YP_001398707.1	CDS	JJD26997_1739	NC_009707.1	1530352	1530678	D	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; hypothetical protein	1530352..1530678	Campylobacter jejuni subsp. doylei 269.97	5389519
YP_001398708.1	CDS	algC	NC_009707.1	1531030	1532400	R	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase	complement(1531030..1532400)	Campylobacter jejuni subsp. doylei 269.97	5388579
YP_001398709.1	CDS	fliL	NC_009707.1	1532518	1533054	D	interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL	1532518..1533054	Campylobacter jejuni subsp. doylei 269.97	5389492
YP_001398710.1	CDS	acpS	NC_009707.1	1533054	1533401	D	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase	1533054..1533401	Campylobacter jejuni subsp. doylei 269.97	5389374
YP_001398711.1	CDS	JJD26997_1743	NC_009707.1	1533402	1533821	R	hypothetical protein	complement(1533402..1533821)	Campylobacter jejuni subsp. doylei 269.97	5389857
YP_001398712.1	CDS	JJD26997_1744	NC_009707.1	1533818	1535179	R	identified by match to protein family HMM PF00067; cytochrome P450 family protein	complement(1533818..1535179)	Campylobacter jejuni subsp. doylei 269.97	5390242
YP_001398713.1	CDS	JJD26997_1745	NC_009707.1	1535176	1536297	R	identified by glimmer; putative; hypothetical protein	complement(1535176..1536297)	Campylobacter jejuni subsp. doylei 269.97	5388944
YP_001398714.1	CDS	JJD26997_1746	NC_009707.1	1536350	1537537	R	identified by match to protein family HMM PF05159; capsule polysaccharide export protein KpsS	complement(1536350..1537537)	Campylobacter jejuni subsp. doylei 269.97	5388998
YP_001398715.1	CDS	JJD26997_1747	NC_009707.1	1537566	1539632	R	identified by match to protein family HMM PF05159; capsule polysaccharide export protein KpsC	complement(1537566..1539632)	Campylobacter jejuni subsp. doylei 269.97	5388776
YP_001398716.1	CDS	JJD26997_1748	NC_009707.1	1539629	1540141	R	converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase	complement(1539629..1540141)	Campylobacter jejuni subsp. doylei 269.97	5389487
YP_001398717.1	CDS	JJD26997_1749	NC_009707.1	1540131	1540892	R	identified by match to protein family HMM PF00483; putative sugar-1-phosphate nucleotidyltransferase	complement(1540131..1540892)	Campylobacter jejuni subsp. doylei 269.97	5388755
YP_001398718.1	CDS	JJD26997_1750	NC_009707.1	1540894	1541433	R	hypothetical protein	complement(1540894..1541433)	Campylobacter jejuni subsp. doylei 269.97	5389306
YP_001398719.1	CDS	JJD26997_1751	NC_009707.1	1541487	1543826	R	identified by match to protein family HMM PF00391; hypothetical protein	complement(1541487..1543826)	Campylobacter jejuni subsp. doylei 269.97	5389985
YP_001398720.1	CDS	JJD26997_1752	NC_009707.1	1543841	1544602	R	identified by match to protein family HMM PF08241; match to protein family HMM PF08242; putative methyltransferase	complement(1543841..1544602)	Campylobacter jejuni subsp. doylei 269.97	5390109
YP_001398721.1	CDS	JJD26997_1753	NC_009707.1	1544653	1545426	R	identified by match to protein family HMM PF08241; putative methyltransferase	complement(1544653..1545426)	Campylobacter jejuni subsp. doylei 269.97	5389471
YP_001398722.1	CDS	JJD26997_1755	NC_009707.1	1547379	1548050	R	identified by match to protein family HMM PF00483; D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	complement(1547379..1548050)	Campylobacter jejuni subsp. doylei 269.97	5389302
YP_001398723.1	CDS	gmhA	NC_009707.1	1548038	1548634	R	identified by match to protein family HMM TIGR00441; phosphoheptose isomerase	complement(1548038..1548634)	Campylobacter jejuni subsp. doylei 269.97	5390311
YP_001398724.1	CDS	JJD26997_1757	NC_009707.1	1548627	1548764	R	identified by glimmer; putative; hypothetical protein	complement(1548627..1548764)	Campylobacter jejuni subsp. doylei 269.97	5389537
YP_001398725.1	CDS	JJD26997_1759	NC_009707.1	1549869	1550888	R	identified by match to protein family HMM PF00288; match to protein family HMM PF08544; D-glycero-D-manno-heptose 7-phosphate kinase	complement(1549869..1550888)	Campylobacter jejuni subsp. doylei 269.97	5388861
YP_001398726.1	CDS	JJD26997_1762	NC_009707.1	1551779	1552720	R	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; HrEpiB	complement(1551779..1552720)	Campylobacter jejuni subsp. doylei 269.97	5388916
YP_001398727.1	CDS	JJD26997_1763	NC_009707.1	1552744	1553781	R	identified by match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; GDP-mannose 4,6-dehydratase	complement(1552744..1553781)	Campylobacter jejuni subsp. doylei 269.97	5388746
YP_001398728.1	CDS	JJD26997_1764	NC_009707.1	1553790	1554851	R	identified by match to protein family HMM PF01370; GDP-fucose synthetase	complement(1553790..1554851)	Campylobacter jejuni subsp. doylei 269.97	5389459
YP_001398729.1	CDS	JJD26997_1765	NC_009707.1	1554932	1555993	R	identified by match to protein family HMM PF01370; GDP-fucose synthetase	complement(1554932..1555993)	Campylobacter jejuni subsp. doylei 269.97	5389172
YP_001398730.1	CDS	JJD26997_1766	NC_009707.1	1555993	1556922	R	hypothetical protein	complement(1555993..1556922)	Campylobacter jejuni subsp. doylei 269.97	5389127
YP_001398731.1	CDS	JJD26997_1773	NC_009707.1	1560283	1560759	R	identified by glimmer; putative; hypothetical protein	complement(1560283..1560759)	Campylobacter jejuni subsp. doylei 269.97	5389964
YP_001398732.1	CDS	JJD26997_1777	NC_009707.1	1562685	1563665	R	identified by glimmer; putative; hypothetical protein	complement(1562685..1563665)	Campylobacter jejuni subsp. doylei 269.97	5389690
YP_001398733.1	CDS	kpsF	NC_009707.1	1563662	1564609	R	identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; arabinose-5-phosphate isomerase	complement(1563662..1564609)	Campylobacter jejuni subsp. doylei 269.97	5390096
YP_001398734.1	CDS	kpsD	NC_009707.1	1564619	1566277	R	identified by match to protein family HMM PF02563; capsular polysaccharide ABC transporter periplasmic polysaccharide-binding protein	complement(1564619..1566277)	Campylobacter jejuni subsp. doylei 269.97	5388792
YP_001398735.1	CDS	kpsE	NC_009707.1	1566279	1567397	R	identified by match to protein family HMM PF02706; capsular polysaccharide ABC transporter	complement(1566279..1567397)	Campylobacter jejuni subsp. doylei 269.97	5390190
YP_001398736.1	CDS	kpsT	NC_009707.1	1567397	1568059	R	identified by match to protein family HMM PF00005; capsular polysaccharide ABC transporter ATP-binding protein	complement(1567397..1568059)	Campylobacter jejuni subsp. doylei 269.97	5390514
YP_001398737.1	CDS	kpsM	NC_009707.1	1568056	1568838	R	identified by match to protein family HMM PF01061; capsular polysaccharide ABC transporter permease	complement(1568056..1568838)	Campylobacter jejuni subsp. doylei 269.97	5390327
YP_001398738.1	CDS	JJD26997_1783	NC_009707.1	1568915	1569322	R	hypothetical protein	complement(1568915..1569322)	Campylobacter jejuni subsp. doylei 269.97	5389577
YP_001398739.1	CDS	JJD26997_1784	NC_009707.1	1569401	1569964	D	identified by glimmer; putative; hypothetical protein	1569401..1569964	Campylobacter jejuni subsp. doylei 269.97	5389525
YP_001398740.1	CDS	JJD26997_1785	NC_009707.1	1570001	1570690	D	identified by match to protein family HMM PF08761; deoxyuridine triphosphatase domain-containing protein	1570001..1570690	Campylobacter jejuni subsp. doylei 269.97	5389228
YP_001398741.1	CDS	JJD26997_1787	NC_009707.1	1570692	1571405	D	identified by match to protein family HMM PF04401; hypothetical protein	1570692..1571405	Campylobacter jejuni subsp. doylei 269.97	5388799
YP_001398742.1	CDS	tilS	NC_009707.1	1571388	1572353	R	identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; tRNA(Ile)-lysidine synthetase	complement(1571388..1572353)	Campylobacter jejuni subsp. doylei 269.97	5389024
YP_001398743.1	CDS	yliG	NC_009707.1	1572343	1573710	R	identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; putative tRNA modifying protein	complement(1572343..1573710)	Campylobacter jejuni subsp. doylei 269.97	5388597
YP_001398744.1	CDS	prfB	NC_009707.1	1575517	1576614	D	recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2	1575517..1576614	Campylobacter jejuni subsp. doylei 269.97	5388950
YP_001398745.1	CDS	JJD26997_1791	NC_009707.1	1576810	1577841	D	identified by match to protein family HMM PF01112; putative L-asparaginase	1576810..1577841	Campylobacter jejuni subsp. doylei 269.97	5390317
YP_001398746.1	CDS	truD	NC_009707.1	1578063	1579181	R	catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D	complement(1578063..1579181)	Campylobacter jejuni subsp. doylei 269.97	5389420
YP_001398747.1	CDS	JJD26997_1793	NC_009707.1	1579150	1579971	R	catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase	complement(1579150..1579971)	Campylobacter jejuni subsp. doylei 269.97	5389066
YP_001398748.1	CDS	JJD26997_1794	NC_009707.1	1580058	1581131	D	hypothetical protein	1580058..1581131	Campylobacter jejuni subsp. doylei 269.97	5390395
YP_001398749.1	CDS	JJD26997_1795	NC_009707.1	1581128	1581511	D	hypothetical protein	1581128..1581511	Campylobacter jejuni subsp. doylei 269.97	5389579
YP_001398750.1	CDS	JJD26997_1796	NC_009707.1	1581504	1582190	D	identified by match to protein family HMM PF03602; putative site-specific DNA methyltransferase	1581504..1582190	Campylobacter jejuni subsp. doylei 269.97	5389367
YP_001398751.1	CDS	JJD26997_1797	NC_009707.1	1582191	1582730	R	alpha-2,3-sialyltransferase	complement(1582191..1582730)	Campylobacter jejuni subsp. doylei 269.97	5390250
YP_001398752.1	CDS	JJD26997_1798	NC_009707.1	1582703	1583083	R	identified by glimmer; putative; hypothetical protein	complement(1582703..1583083)	Campylobacter jejuni subsp. doylei 269.97	5390175
YP_001398753.1	CDS	JJD26997_1799	NC_009707.1	1583288	1584424	R	identified by match to protein family HMM PF08241; methyltransferase domain-containing protein	complement(1583288..1584424)	Campylobacter jejuni subsp. doylei 269.97	5389315
YP_001398754.1	CDS	JJD26997_1800	NC_009707.1	1584411	1585142	R	capsular polysaccharide biosynthesis protein	complement(1584411..1585142)	Campylobacter jejuni subsp. doylei 269.97	5389032
YP_001398755.1	CDS	JJD26997_1801	NC_009707.1	1585139	1586662	R	capsular polysaccharide biosynthesis protein	complement(1585139..1586662)	Campylobacter jejuni subsp. doylei 269.97	5390102
YP_001398756.1	CDS	JJD26997_1802	NC_009707.1	1586659	1587057	R	identified by match to protein family HMM TIGR01681; match to protein family HMM TIGR01689; capsule biosynthesis phosphatase	complement(1586659..1587057)	Campylobacter jejuni subsp. doylei 269.97	5390084
YP_001398757.1	CDS	JJD26997_1803	NC_009707.1	1587112	1587837	R	identified by match to protein family HMM PF00483; dTDP-glucose pyrophosphorylase	complement(1587112..1587837)	Campylobacter jejuni subsp. doylei 269.97	5388784
YP_001398758.1	CDS	JJD26997_1804	NC_009707.1	1587834	1588163	R	hypothetical protein	complement(1587834..1588163)	Campylobacter jejuni subsp. doylei 269.97	5389463
YP_001398759.1	CDS	JJD26997_1805	NC_009707.1	1588166	1588501	R	hypothetical protein	complement(1588166..1588501)	Campylobacter jejuni subsp. doylei 269.97	5390303
YP_001398760.1	CDS	JJD26997_1806	NC_009707.1	1588494	1589219	R	putative nucleotidyltransferase	complement(1588494..1589219)	Campylobacter jejuni subsp. doylei 269.97	5389694
YP_001398761.1	CDS	JJD26997_1807	NC_009707.1	1589213	1589851	R	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD superfamily hydrolase	complement(1589213..1589851)	Campylobacter jejuni subsp. doylei 269.97	5390590
YP_001398762.1	CDS	JJD26997_1808	NC_009707.1	1589844	1590482	R	hypothetical protein	complement(1589844..1590482)	Campylobacter jejuni subsp. doylei 269.97	5389452
YP_001398763.1	CDS	JJD26997_1809	NC_009707.1	1590581	1591786	D	putative sugar transferase	1590581..1591786	Campylobacter jejuni subsp. doylei 269.97	5389828
YP_001398764.1	CDS	flgI	NC_009707.1	1591882	1592928	D	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein	1591882..1592928	Campylobacter jejuni subsp. doylei 269.97	5390060
YP_001398765.1	CDS	JJD26997_1811	NC_009707.1	1592928	1593269	D	hypothetical protein	1592928..1593269	Campylobacter jejuni subsp. doylei 269.97	5389818
YP_001398766.1	CDS	JJD26997_1812	NC_009707.1	1593335	1593529	D	hypothetical protein	1593335..1593529	Campylobacter jejuni subsp. doylei 269.97	5390404
YP_001398767.1	CDS	JJD26997_1813	NC_009707.1	1593570	1594004	D	hypothetical protein	1593570..1594004	Campylobacter jejuni subsp. doylei 269.97	5389491
YP_001398768.1	CDS	flgK	NC_009707.1	1594014	1595840	D	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK	1594014..1595840	Campylobacter jejuni subsp. doylei 269.97	5388948
YP_001398769.1	CDS	JJD26997_1815	NC_009707.1	1595857	1596621	D	identified by match to protein family HMM TIGR02757; hypothetical protein	1595857..1596621	Campylobacter jejuni subsp. doylei 269.97	5389447
YP_001398770.1	CDS	JJD26997_1817	NC_009707.1	1596625	1597389	D	identified by match to protein family HMM PF01925; hypothetical protein	1596625..1597389	Campylobacter jejuni subsp. doylei 269.97	5390129
YP_001398771.1	CDS	ctsF	NC_009707.1	1597386	1598564	R	identified by match to protein family HMM PF00482; general secretory pathway protein F	complement(1597386..1598564)	Campylobacter jejuni subsp. doylei 269.97	5389478
YP_001398772.1	CDS	ctsE	NC_009707.1	1598561	1600120	R	identified by match to protein family HMM PF00437; general secretory pathway protein E	complement(1598561..1600120)	Campylobacter jejuni subsp. doylei 269.97	5389864
YP_001398773.1	CDS	ctsX	NC_009707.1	1600110	1600697	R	transformation system protein	complement(1600110..1600697)	Campylobacter jejuni subsp. doylei 269.97	5389230
YP_001398774.1	CDS	ctsP	NC_009707.1	1600701	1601309	R	transformation system protein	complement(1600701..1601309)	Campylobacter jejuni subsp. doylei 269.97	5390575
YP_001398775.1	CDS	ctsD	NC_009707.1	1601302	1602714	R	identified by match to protein family HMM PF00263; match to protein family HMM PF07655; match to protein family HMM PF07660; match to protein family HMM TIGR02519; general secretory pathway protein D	complement(1601302..1602714)	Campylobacter jejuni subsp. doylei 269.97	5389539
YP_001398776.1	CDS	ctsR	NC_009707.1	1602692	1603003	R	transformation system protein	complement(1602692..1603003)	Campylobacter jejuni subsp. doylei 269.97	5389027
YP_001398777.1	CDS	JJD26997_1823	NC_009707.1	1603027	1606587	R	identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate ferredoxin/flavodoxin oxidoreductase	complement(1603027..1606587)	Campylobacter jejuni subsp. doylei 269.97	5390610
YP_001398778.1	CDS	JJD26997_1824	NC_009707.1	1606680	1607321	R	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD-superfamily hydrolase	complement(1606680..1607321)	Campylobacter jejuni subsp. doylei 269.97	5389644
YP_001398779.1	CDS	cadF	NC_009707.1	1607321	1608280	R	identified by match to protein family HMM PF00691; match to protein family HMM PF01389; fibronectin-binding protein	complement(1607321..1608280)	Campylobacter jejuni subsp. doylei 269.97	5389940
YP_001398780.1	CDS	rpsI	NC_009707.1	1608403	1608792	R	forms a direct contact with the tRNA during translation; 30S ribosomal protein S9	complement(1608403..1608792)	Campylobacter jejuni subsp. doylei 269.97	5390081
YP_001398781.1	CDS	rplM	NC_009707.1	1608795	1609238	R	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13	complement(1608795..1609238)	Campylobacter jejuni subsp. doylei 269.97	5389145
YP_001398782.1	CDS	JJD26997_1828	NC_009707.1	1609304	1612069	R	identified by match to protein family HMM PF00580; putative recombination protein RecB	complement(1609304..1612069)	Campylobacter jejuni subsp. doylei 269.97	5389673
YP_001398783.1	CDS	JJD26997_1829	NC_009707.1	1612066	1614432	R	hypothetical protein	complement(1612066..1614432)	Campylobacter jejuni subsp. doylei 269.97	5388915
YP_001398784.1	CDS	JJD26997_1830	NC_009707.1	1614429	1614950	R	putative lipoprotein	complement(1614429..1614950)	Campylobacter jejuni subsp. doylei 269.97	5388993
YP_001398785.1	CDS	JJD26997_1831	NC_009707.1	1614937	1615539	R	hypothetical protein	complement(1614937..1615539)	Campylobacter jejuni subsp. doylei 269.97	5390270
YP_001398786.1	CDS	JJD26997_1832	NC_009707.1	1615634	1615852	R	identified by glimmer; putative; hypothetical protein	complement(1615634..1615852)	Campylobacter jejuni subsp. doylei 269.97	5389798
YP_001398787.1	CDS	ccoP	NC_009707.1	1615852	1616715	R	identified by match to protein family HMM PF00034; match to protein family HMM TIGR00782; cytochrome c oxidase, cbb3-type subunit III	complement(1615852..1616715)	Campylobacter jejuni subsp. doylei 269.97	5390284
YP_001398788.1	CDS	ccoQ	NC_009707.1	1616715	1616981	R	identified by match to protein family HMM TIGR02736; cytochrome c oxidase, cbb3-type subunit IV	complement(1616715..1616981)	Campylobacter jejuni subsp. doylei 269.97	5388600
YP_001398789.1	CDS	ccoO	NC_009707.1	1616983	1617648	R	CcoO; FixO; cbb3-type cytochrome c oxidase subunit II	complement(1616983..1617648)	Campylobacter jejuni subsp. doylei 269.97	5389613
YP_001398790.1	CDS	ccoN	NC_009707.1	1617661	1619127	R	CcoN; FixN; cbb3-type cytochrome c oxidase subunit I	complement(1617661..1619127)	Campylobacter jejuni subsp. doylei 269.97	5390291
YP_001398791.1	CDS	JJD26997_1837	NC_009707.1	1619255	1619935	R	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator	complement(1619255..1619935)	Campylobacter jejuni subsp. doylei 269.97	5390496
YP_001398792.1	CDS	JJD26997_1841	NC_009707.1	1621145	1621804	R	hypothetical protein	complement(1621145..1621804)	Campylobacter jejuni subsp. doylei 269.97	5389615
YP_001398793.1	CDS	carA	NC_009707.1	1621801	1622919	R	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit	complement(1621801..1622919)	Campylobacter jejuni subsp. doylei 269.97	5390032
YP_001398794.1	CDS	JJD26997_1843	NC_009707.1	1622919	1623470	R	identified by match to protein family HMM PF04368; hypothetical protein	complement(1622919..1623470)	Campylobacter jejuni subsp. doylei 269.97	5389347
YP_001398795.1	CDS	JJD26997_1844	NC_009707.1	1623563	1624081	R	hypothetical protein	complement(1623563..1624081)	Campylobacter jejuni subsp. doylei 269.97	5389094
YP_001398796.1	CDS	JJD26997_1845	NC_009707.1	1624074	1624355	R	hypothetical protein	complement(1624074..1624355)	Campylobacter jejuni subsp. doylei 269.97	5390107
YP_001398797.1	CDS	purA	NC_009707.1	1624499	1625749	R	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase	complement(1624499..1625749)	Campylobacter jejuni subsp. doylei 269.97	5390216
YP_001398798.1	CDS	JJD26997_1848	NC_009707.1	1626015	1627223	D	identified by match to protein family HMM PF04143; putative inner membrane protein	1626015..1627223	Campylobacter jejuni subsp. doylei 269.97	5388892
YP_001398799.1	CDS	JJD26997_1849	NC_009707.1	1627227	1627454	D	identified by match to protein family HMM PF01206; hypothetical protein	1627227..1627454	Campylobacter jejuni subsp. doylei 269.97	5389456
YP_001398800.1	CDS	hsdM	NC_009707.1	1627525	1628994	R	identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit	complement(1627525..1628994)	Campylobacter jejuni subsp. doylei 269.97	5388926
YP_001398801.1	CDS	JJD26997_1851	NC_009707.1	1629053	1629637	R	identified by match to protein family HMM PF01420; type I restriction modification DNA specificity domain-containing protein	complement(1629053..1629637)	Campylobacter jejuni subsp. doylei 269.97	5389545
YP_001398802.1	CDS	JJD26997_1852	NC_009707.1	1629704	1630201	R	identified by match to protein family HMM PF01420; anti-codon nuclease masking agent	complement(1629704..1630201)	Campylobacter jejuni subsp. doylei 269.97	5388654
YP_001398803.1	CDS	JJD26997_1853	NC_009707.1	1630194	1633163	R	identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction enzyme EcoR124II R protein	complement(1630194..1633163)	Campylobacter jejuni subsp. doylei 269.97	5390308
YP_001398804.1	CDS	putP	NC_009707.1	1633238	1634707	R	identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; sodium/proline permease	complement(1633238..1634707)	Campylobacter jejuni subsp. doylei 269.97	5389904
YP_001398805.1	CDS	JJD26997_1855	NC_009707.1	1634725	1638213	R	identified by match to protein family HMM PF00171; match to protein family HMM PF01619; putative bifunctional putA protein	complement(1634725..1638213)	Campylobacter jejuni subsp. doylei 269.97	5390292
YP_001398806.1	CDS	JJD26997_1857	NC_009707.1	1639374	1639946	R	identified by match to protein family HMM PF01206; hypothetical protein	complement(1639374..1639946)	Campylobacter jejuni subsp. doylei 269.97	5389074
YP_001398807.1	CDS	JJD26997_1858	NC_009707.1	1640058	1642160	R	identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein	complement(1640058..1642160)	Campylobacter jejuni subsp. doylei 269.97	5389380
YP_001398808.1	CDS	JJD26997_1859	NC_009707.1	1642270	1642971	R	molybdate transport repressor	complement(1642270..1642971)	Campylobacter jejuni subsp. doylei 269.97	5390165
YP_001398809.1	CDS	fdhD	NC_009707.1	1643000	1643782	R	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein	complement(1643000..1643782)	Campylobacter jejuni subsp. doylei 269.97	5388819
YP_001398810.1	CDS	fdhC	NC_009707.1	1643948	1644880	R	identified by match to protein family HMM TIGR01583; formate dehydrogenase, cytochrome b subunit	complement(1643948..1644880)	Campylobacter jejuni subsp. doylei 269.97	5389190
YP_001398811.1	CDS	fdhB	NC_009707.1	1644877	1645518	R	identified by match to protein family HMM PF00037; formate dehydrogenase, iron-sulfur subunit	complement(1644877..1645518)	Campylobacter jejuni subsp. doylei 269.97	5389988
YP_001398812.1	CDS	JJD26997_1865	NC_009707.1	1648319	1648510	R	identified by match to protein family HMM TIGR01409; Tat pathway signal sequence domain-containing protein	complement(1648319..1648510)	Campylobacter jejuni subsp. doylei 269.97	5390433
YP_001398813.1	CDS	JJD26997_1866	NC_009707.1	1648485	1649186	R	hypothetical protein	complement(1648485..1649186)	Campylobacter jejuni subsp. doylei 269.97	5389944
YP_001398814.1	CDS	nspC	NC_009707.1	1649501	1650649	R	identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047; carboxynorspermidine decarboxylase	complement(1649501..1650649)	Campylobacter jejuni subsp. doylei 269.97	5389446
YP_001398815.1	CDS	JJD26997_1869	NC_009707.1	1651349	1652314	D	identified by match to protein family HMM PF00394; match to protein family HMM PF07731; multicopper oxidase family protein	1651349..1652314	Campylobacter jejuni subsp. doylei 269.97	5389751
YP_001398816.1	CDS	JJD26997_1870	NC_009707.1	1652316	1652537	D	identified by match to protein family HMM PF02597; thiS family protein	1652316..1652537	Campylobacter jejuni subsp. doylei 269.97	5389222
YP_001398817.1	CDS	JJD26997_1871	NC_009707.1	1652538	1652984	D	identified by match to protein family HMM PF02391; molybdopterin converting factor subunit 2	1652538..1652984	Campylobacter jejuni subsp. doylei 269.97	5390197
YP_001398818.1	CDS	JJD26997_1872	NC_009707.1	1652988	1654178	D	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; putative molybdopterin biosynthesis MoeA protein	1652988..1654178	Campylobacter jejuni subsp. doylei 269.97	5389624
YP_001398819.1	CDS	cas2	NC_009707.1	1654808	1655239	R	identified by match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein	complement(1654808..1655239)	Campylobacter jejuni subsp. doylei 269.97	5390443
YP_001398820.1	CDS	cas1	NC_009707.1	1655232	1656122	R	identified by match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein	complement(1655232..1656122)	Campylobacter jejuni subsp. doylei 269.97	5390335
YP_001398821.1	CDS	JJD26997_1875	NC_009707.1	1656109	1659063	R	identified by match to protein family HMM TIGR01865; CRISPR-associated Cas5e family protein	complement(1656109..1659063)	Campylobacter jejuni subsp. doylei 269.97	5389688
YP_001398822.1	CDS	JJD26997_1878	NC_009707.1	1659798	1659923	D	identified by glimmer; putative; hypothetical protein	1659798..1659923	Campylobacter jejuni subsp. doylei 269.97	5390225
YP_001398823.1	CDS	purM	NC_009707.1	1660705	1661694	R	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase	complement(1660705..1661694)	Campylobacter jejuni subsp. doylei 269.97	5389963
YP_001398824.1	CDS	coaE	NC_009707.1	1661756	1662361	D	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase	1661756..1662361	Campylobacter jejuni subsp. doylei 269.97	5389334
YP_001398825.1	CDS	dapF	NC_009707.1	1662358	1663107	D	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase	1662358..1663107	Campylobacter jejuni subsp. doylei 269.97	5389534
YP_001398826.1	CDS	JJD26997_1885	NC_009707.1	1663082	1663816	D	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein	1663082..1663816	Campylobacter jejuni subsp. doylei 269.97	5389936
YP_001398827.1	CDS	JJD26997_1884	NC_009707.1	1663813	1664850	R	hypothetical protein	complement(1663813..1664850)	Campylobacter jejuni subsp. doylei 269.97	5390162
YP_001398828.1	CDS	pgi	NC_009707.1	1665426	1666646	R	catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate isomerase	complement(1665426..1666646)	Campylobacter jejuni subsp. doylei 269.97	5390566
YP_001398829.1	CDS	galU	NC_009707.1	1666647	1667465	R	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase	complement(1666647..1667465)	Campylobacter jejuni subsp. doylei 269.97	5390525
YP_001398830.1	CDS	acs	NC_009707.1	1667546	1669519	R	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase	complement(1667546..1669519)	Campylobacter jejuni subsp. doylei 269.97	5390067
YP_001398831.1	CDS	JJD26997_1890	NC_009707.1	1669656	1670651	R	identified by match to protein family HMM PF00005; tungsten ABC transporter ATP-binding protein	complement(1669656..1670651)	Campylobacter jejuni subsp. doylei 269.97	5389540
YP_001398832.1	CDS	JJD26997_1891	NC_009707.1	1670653	1671339	R	identified by match to protein family HMM PF00528; putative tungstate ABC transporter permease	complement(1670653..1671339)	Campylobacter jejuni subsp. doylei 269.97	5389442
YP_001398833.1	CDS	JJD26997_1892	NC_009707.1	1671419	1672228	D	putative tungstate ABC transporter periplasmic tungstate-binding protein	1671419..1672228	Campylobacter jejuni subsp. doylei 269.97	5390170
YP_001398834.1	CDS	JJD26997_1898	NC_009707.1	1674352	1674489	R	identified by glimmer; putative; hypothetical protein	complement(1674352..1674489)	Campylobacter jejuni subsp. doylei 269.97	5389836
YP_001398835.1	CDS	JJD26997_1899	NC_009707.1	1674776	1675543	D	identified by match to protein family HMM PF03746; LamB/YcsF family protein	1674776..1675543	Campylobacter jejuni subsp. doylei 269.97	5390490
YP_001398836.1	CDS	JJD26997_1900	NC_009707.1	1675553	1676293	D	identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein	1675553..1676293	Campylobacter jejuni subsp. doylei 269.97	5390539
YP_001398837.1	CDS	JJD26997_1902	NC_009707.1	1676274	1677239	D	identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; hypothetical protein	1676274..1677239	Campylobacter jejuni subsp. doylei 269.97	5389383
YP_001398838.1	CDS	JJD26997_1901	NC_009707.1	1677236	1678132	R	identified by match to protein family HMM PF00892; integral membrane protein	complement(1677236..1678132)	Campylobacter jejuni subsp. doylei 269.97	5388741
YP_001398839.1	CDS	JJD26997_1903	NC_009707.1	1678165	1678743	R	identified by match to protein family HMM PF02525; flavodoxin-like fold domain-containing protein	complement(1678165..1678743)	Campylobacter jejuni subsp. doylei 269.97	5389902
YP_001398840.1	CDS	JJD26997_1904	NC_009707.1	1678913	1679131	D	identified by match to protein family HMM PF08212; putative BLC protein-like protein	1678913..1679131	Campylobacter jejuni subsp. doylei 269.97	5389215
YP_001398841.1	CDS	JJD26997_1905	NC_009707.1	1679133	1680209	R	identified by match to protein family HMM PF00107; match to protein family HMM PF08240; zinc-binding dehydrogenase family oxidoreductase	complement(1679133..1680209)	Campylobacter jejuni subsp. doylei 269.97	5390515
YP_001398842.1	CDS	JJD26997_1909	NC_009707.1	1682735	1683232	D	prophage ps3 protein 01	1682735..1683232	Campylobacter jejuni subsp. doylei 269.97	5389014
YP_001398843.1	CDS	JJD26997_1910	NC_009707.1	1683219	1683668	D	identified by glimmer; putative; hypothetical protein	1683219..1683668	Campylobacter jejuni subsp. doylei 269.97	5390378
YP_001398844.1	CDS	JJD26997_1911	NC_009707.1	1683899	1685260	D	identified by match to protein family HMM PF01420; hypothetical protein	1683899..1685260	Campylobacter jejuni subsp. doylei 269.97	5389814
YP_001398845.1	CDS	JJD26997_1912	NC_009707.1	1685381	1686451	D	identified by match to protein family HMM PF02661; putative MloA protein	1685381..1686451	Campylobacter jejuni subsp. doylei 269.97	5389521
YP_001398846.1	CDS	JJD26997_1915	NC_009707.1	1688239	1690200	D	identified by match to protein family HMM PF00015; match to protein family HMM PF02743; methyl-accepting chemotaxis protein	1688239..1690200	Campylobacter jejuni subsp. doylei 269.97	5390337
YP_001398847.1	CDS	pflA	NC_009707.1	1690243	1692609	R	paralyzed flagella protein PflA	complement(1690243..1692609)	Campylobacter jejuni subsp. doylei 269.97	5390094
YP_001398848.1	CDS	nuoN	NC_009707.1	1692631	1694019	R	identified by match to protein family HMM PF00361; NADH-quinone oxidoreductase subunit N	complement(1692631..1694019)	Campylobacter jejuni subsp. doylei 269.97	5389873
YP_001398849.1	CDS	nuoM	NC_009707.1	1694009	1695496	R	identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-quinone oxidoreductase subunit M	complement(1694009..1695496)	Campylobacter jejuni subsp. doylei 269.97	5390463
YP_001398850.1	CDS	nuoL	NC_009707.1	1695498	1697288	R	Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L	complement(1695498..1697288)	Campylobacter jejuni subsp. doylei 269.97	5390465
YP_001398851.1	CDS	nuoK	NC_009707.1	1697290	1697586	R	identified by match to protein family HMM PF00420; NADH-quinone oxidoreductase subunit K	complement(1697290..1697586)	Campylobacter jejuni subsp. doylei 269.97	5390245
YP_001398852.1	CDS	nuoJ	NC_009707.1	1697583	1698101	R	Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J	complement(1697583..1698101)	Campylobacter jejuni subsp. doylei 269.97	5390374
YP_001398853.1	CDS	nuoI	NC_009707.1	1698098	1698739	R	Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I	complement(1698098..1698739)	Campylobacter jejuni subsp. doylei 269.97	5390116
YP_001398854.1	CDS	nuoH	NC_009707.1	1698749	1699747	R	Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H	complement(1698749..1699747)	Campylobacter jejuni subsp. doylei 269.97	5388737
YP_001398855.1	CDS	nuoG	NC_009707.1	1699740	1702202	R	Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G	complement(1699740..1702202)	Campylobacter jejuni subsp. doylei 269.97	5389186
YP_001398856.1	CDS	JJD26997_1925	NC_009707.1	1702199	1702891	R	identified by glimmer; putative; hypothetical protein	complement(1702199..1702891)	Campylobacter jejuni subsp. doylei 269.97	5389643
YP_001398857.1	CDS	JJD26997_1926	NC_009707.1	1702888	1703028	R	hypothetical protein	complement(1702888..1703028)	Campylobacter jejuni subsp. doylei 269.97	5389257
YP_001398858.1	CDS	nuoD	NC_009707.1	1703112	1704338	R	Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D	complement(1703112..1704338)	Campylobacter jejuni subsp. doylei 269.97	5389197
YP_001398859.1	CDS	nuoC	NC_009707.1	1704340	1705131	R	Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit C	complement(1704340..1705131)	Campylobacter jejuni subsp. doylei 269.97	5389176
YP_001398860.1	CDS	nuoB	NC_009707.1	1705131	1705634	R	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B	complement(1705131..1705634)	Campylobacter jejuni subsp. doylei 269.97	5388705
YP_001398861.1	CDS	nuoA	NC_009707.1	1705616	1706005	R	Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit A	complement(1705616..1706005)	Campylobacter jejuni subsp. doylei 269.97	5389587
YP_001398862.1	CDS	JJD26997_1931	NC_009707.1	1706118	1706783	R	identified by match to protein family HMM PF00005; peptide ABC transporter, ATP-binding protein	complement(1706118..1706783)	Campylobacter jejuni subsp. doylei 269.97	5388685
YP_001398863.1	CDS	JJD26997_1932	NC_009707.1	1706776	1707486	R	identified by match to protein family HMM PF00005; peptide ABC transporter, ATP-binding protein	complement(1706776..1707486)	Campylobacter jejuni subsp. doylei 269.97	5389202
YP_001398864.1	CDS	JJD26997_1933	NC_009707.1	1707483	1708271	R	identified by match to protein family HMM PF00528; peptide ABC transporter, permease protein	complement(1707483..1708271)	Campylobacter jejuni subsp. doylei 269.97	5388973
YP_001398865.1	CDS	JJD26997_1934	NC_009707.1	1708264	1709208	R	identified by match to protein family HMM PF00528; peptide ABC transporter, permease protein	complement(1708264..1709208)	Campylobacter jejuni subsp. doylei 269.97	5390353
YP_001398866.1	CDS	JJD26997_1935	NC_009707.1	1709208	1710743	R	identified by match to protein family HMM PF00496; peptide ABC transporter periplasmic peptide-binding protein	complement(1709208..1710743)	Campylobacter jejuni subsp. doylei 269.97	5389937
YP_001398867.1	CDS	JJD26997_1936	NC_009707.1	1710852	1713623	R	identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913; oxidoreductase, FAD-binding, iron-sulfur cluster-binding	complement(1710852..1713623)	Campylobacter jejuni subsp. doylei 269.97	5389182
YP_001398868.1	CDS	JJD26997_1937	NC_009707.1	1713775	1714197	D	identified by match to protein family HMM PF00042; hypothetical protein	1713775..1714197	Campylobacter jejuni subsp. doylei 269.97	5388872
YP_001398869.1	CDS	JJD26997_1938	NC_009707.1	1714218	1715849	R	efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane protein/ATP-binding component	complement(1714218..1715849)	Campylobacter jejuni subsp. doylei 269.97	5388834
YP_001398870.1	CDS	JJD26997_1942	NC_009707.1	1717682	1717822	R	identified by glimmer; putative; hypothetical protein	complement(1717682..1717822)	Campylobacter jejuni subsp. doylei 269.97	5389871
YP_001398871.1	CDS	infA	NC_009707.1	1718154	1718372	D	stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1	1718154..1718372	Campylobacter jejuni subsp. doylei 269.97	5389884
YP_001398872.1	CDS	rpsM	NC_009707.1	1718660	1719025	D	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13	1718660..1719025	Campylobacter jejuni subsp. doylei 269.97	5389703
YP_001398873.1	CDS	rpsK	NC_009707.1	1719035	1719427	D	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11	1719035..1719427	Campylobacter jejuni subsp. doylei 269.97	5389148
YP_001398874.1	CDS	rpsD	NC_009707.1	1719455	1720081	D	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4	1719455..1720081	Campylobacter jejuni subsp. doylei 269.97	5388881
YP_001398875.1	CDS	rpoA	NC_009707.1	1720094	1721107	D	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha	1720094..1721107	Campylobacter jejuni subsp. doylei 269.97	5390577
YP_001398876.1	CDS	rplQ	NC_009707.1	1721111	1721464	D	is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17	1721111..1721464	Campylobacter jejuni subsp. doylei 269.97	5389037
YP_001398877.1	CDS	hisG	NC_009707.1	1721638	1722537	D	long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase	1721638..1722537	Campylobacter jejuni subsp. doylei 269.97	5389909
YP_001398878.1	CDS	hisD	NC_009707.1	1722545	1723831	D	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase	1722545..1723831	Campylobacter jejuni subsp. doylei 269.97	5389800
YP_001398879.1	CDS	hisB	NC_009707.1	1723828	1724886	D	catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase	1723828..1724886	Campylobacter jejuni subsp. doylei 269.97	5389008
YP_001398880.1	CDS	JJD26997_1953	NC_009707.1	1724896	1725444	D	identified by glimmer; putative; hypothetical protein	1724896..1725444	Campylobacter jejuni subsp. doylei 269.97	5390579
YP_001398881.1	CDS	JJD26997_1954	NC_009707.1	1725441	1726289	D	identified by match to protein family HMM PF01555; DNA methylase	1725441..1726289	Campylobacter jejuni subsp. doylei 269.97	5389232
YP_001398882.1	CDS	hisH	NC_009707.1	1726286	1726873	D	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH	1726286..1726873	Campylobacter jejuni subsp. doylei 269.97	5389509
YP_001398883.1	CDS	JJD26997_1956	NC_009707.1	1726870	1727604	D	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase	1726870..1727604	Campylobacter jejuni subsp. doylei 269.97	5390238
YP_001398884.1	CDS	hisF-2	NC_009707.1	1727586	1728353	D	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF	1727586..1728353	Campylobacter jejuni subsp. doylei 269.97	5389917
YP_001398885.1	CDS	hisI	NC_009707.1	1728356	1728979	D	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase	1728356..1728979	Campylobacter jejuni subsp. doylei 269.97	5389069
YP_001398886.1	CDS	JJD26997_1959	NC_009707.1	1729003	1730163	R	putative 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	complement(1729003..1730163)	Campylobacter jejuni subsp. doylei 269.97	5388680
YP_001398887.1	CDS	mrp	NC_009707.1	1730189	1731295	R	identified by match to protein family HMM PF01883; ATP/GTP-binding protein	complement(1730189..1731295)	Campylobacter jejuni subsp. doylei 269.97	5390264
YP_001398888.1	CDS	ispDF	NC_009707.1	1731419	1732534	D	bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein	1731419..1732534	Campylobacter jejuni subsp. doylei 269.97	5389567
YP_001398889.1	CDS	JJD26997_1962	NC_009707.1	1732531	1733418	D	identified by match to protein family HMM PF00072; DNA-binding response regulator	1732531..1733418	Campylobacter jejuni subsp. doylei 269.97	5389561
YP_001398890.1	CDS	JJD26997_1963	NC_009707.1	1733396	1734556	D	ATP-sulfurylase family protein	1733396..1734556	Campylobacter jejuni subsp. doylei 269.97	5388701
YP_001398891.1	CDS	pgpA	NC_009707.1	1734561	1735061	D	identified by match to protein family HMM PF04608; phosphatidylglycerophosphatase A	1734561..1735061	Campylobacter jejuni subsp. doylei 269.97	5389756
YP_001398892.1	CDS	rpsT	NC_009707.1	1735140	1735403	D	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20	1735140..1735403	Campylobacter jejuni subsp. doylei 269.97	5389269
YP_001398893.1	CDS	prfA	NC_009707.1	1735422	1736489	D	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1	1735422..1736489	Campylobacter jejuni subsp. doylei 269.97	5390118
YP_001398894.1	CDS	JJD26997_1967	NC_009707.1	1736503	1737246	R	identified by match to protein family HMM PF01243; hypothetical protein	complement(1736503..1737246)	Campylobacter jejuni subsp. doylei 269.97	5389851
YP_001398895.1	CDS	chuA	NC_009707.1	1737440	1739512	D	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent heme receptor	1737440..1739512	Campylobacter jejuni subsp. doylei 269.97	5388624
YP_001398896.1	CDS	JJD26997_1969	NC_009707.1	1739487	1740473	D	identified by match to protein family HMM PF01032; putative hemin ABC transporter permease	1739487..1740473	Campylobacter jejuni subsp. doylei 269.97	5390403
YP_001398897.1	CDS	JJD26997_1970	NC_009707.1	1740473	1741249	D	identified by match to protein family HMM PF00005; hemin ABC transporter ATP-binding protein	1740473..1741249	Campylobacter jejuni subsp. doylei 269.97	5390543
YP_001398898.1	CDS	JJD26997_1972	NC_009707.1	1741246	1742052	D	identified by match to protein family HMM PF01497; putative hemin ABC transporter periplasmic hemin-binding protein	1741246..1742052	Campylobacter jejuni subsp. doylei 269.97	5389777
YP_001398899.1	CDS	kgtP	NC_009707.1	1743062	1744321	D	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; alpha-ketoglutarate permease	1743062..1744321	Campylobacter jejuni subsp. doylei 269.97	5389377
YP_001398900.1	CDS	mutY	NC_009707.1	1744307	1745326	R	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase	complement(1744307..1745326)	Campylobacter jejuni subsp. doylei 269.97	5390501
YP_001398901.1	CDS	JJD26997_1977	NC_009707.1	1746007	1746150	D	hypothetical protein	1746007..1746150	Campylobacter jejuni subsp. doylei 269.97	5389991
YP_001398902.1	CDS	JJD26997_1983	NC_009707.1	1747792	1748313	D	hypothetical protein	1747792..1748313	Campylobacter jejuni subsp. doylei 269.97	5389910
YP_001398903.1	CDS	sdaA	NC_009707.1	1748321	1749685	R	identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase	complement(1748321..1749685)	Campylobacter jejuni subsp. doylei 269.97	5389178
YP_001398904.1	CDS	JJD26997_1985	NC_009707.1	1749694	1751016	R	serine transporter	complement(1749694..1751016)	Campylobacter jejuni subsp. doylei 269.97	5389211
YP_001398905.1	CDS	JJD26997_1986	NC_009707.1	1751188	1751304	R	hypothetical protein	complement(1751188..1751304)	Campylobacter jejuni subsp. doylei 269.97	5389767
YP_001398906.1	CDS	exbB-2	NC_009707.1	1752020	1752445	D	identified by match to protein family HMM PF01618; match to protein family HMM TIGR02805; TonB system transport protein ExbB	1752020..1752445	Campylobacter jejuni subsp. doylei 269.97	5390051
YP_001398907.1	CDS	exbD	NC_009707.1	1752417	1752827	D	identified by match to protein family HMM PF02472; match to protein family HMM TIGR02804; biopolymer transport exbD protein	1752417..1752827	Campylobacter jejuni subsp. doylei 269.97	5389762
YP_001398908.1	CDS	JJD26997_1989	NC_009707.1	1752824	1752997	D	identified by glimmer; putative; hypothetical protein	1752824..1752997	Campylobacter jejuni subsp. doylei 269.97	5389931
YP_001398909.1	CDS	JJD26997_1991	NC_009707.1	1753424	1754287	R	hypothetical protein	complement(1753424..1754287)	Campylobacter jejuni subsp. doylei 269.97	5389998
YP_001398910.1	CDS	JJD26997_1992	NC_009707.1	1754552	1755601	D	hypothetical protein	1754552..1755601	Campylobacter jejuni subsp. doylei 269.97	5388803
YP_001398911.1	CDS	aroC	NC_009707.1	1757630	1758718	R	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase	complement(1757630..1758718)	Campylobacter jejuni subsp. doylei 269.97	5389507
YP_001398912.1	CDS	rnc	NC_009707.1	1758715	1759392	R	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III	complement(1758715..1759392)	Campylobacter jejuni subsp. doylei 269.97	5388719
YP_001398913.1	CDS	rnhA	NC_009707.1	1759379	1759819	R	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H	complement(1759379..1759819)	Campylobacter jejuni subsp. doylei 269.97	5389639
YP_001398914.1	CDS	JJD26997_1997	NC_009707.1	1759806	1760792	R	identified by match to protein family HMM PF07719; hypothetical protein	complement(1759806..1760792)	Campylobacter jejuni subsp. doylei 269.97	5389498
YP_001398915.1	CDS	dnaG	NC_009707.1	1760862	1762679	D	synthesizes RNA primers at the replication forks; DNA primase	1760862..1762679	Campylobacter jejuni subsp. doylei 269.97	5389816
YP_001398916.1	CDS	JJD26997_1999	NC_009707.1	1762761	1763033	D	identified by match to protein family HMM PF01106; NifU family protein	1762761..1763033	Campylobacter jejuni subsp. doylei 269.97	5389181
YP_001398917.1	CDS	JJD26997_2000	NC_009707.1	1763020	1763571	D	hypothetical protein	1763020..1763571	Campylobacter jejuni subsp. doylei 269.97	5390511
YP_001398918.1	CDS	murE	NC_009707.1	1763555	1764838	D	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase	1763555..1764838	Campylobacter jejuni subsp. doylei 269.97	5389234
YP_001398919.1	CDS	JJD26997_2002	NC_009707.1	1764842	1765153	D	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein	1764842..1765153	Campylobacter jejuni subsp. doylei 269.97	5390440
YP_001398920.1	CDS	JJD26997_2003	NC_009707.1	1765174	1766244	D	PDZ domain-containing protein	1765174..1766244	Campylobacter jejuni subsp. doylei 269.97	5388978
YP_001398921.1	CDS	ispA	NC_009707.1	1766241	1767086	D	identified by match to protein family HMM PF00348; geranyltranstransferase	1766241..1767086	Campylobacter jejuni subsp. doylei 269.97	5390257
YP_001398922.1	CDS	tkt	NC_009707.1	1767097	1768995	D	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase	1767097..1768995	Campylobacter jejuni subsp. doylei 269.97	5390469
YP_001398923.1	CDS	JJD26997_2006	NC_009707.1	1768997	1770106	D	identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; ABC transporter permease	1768997..1770106	Campylobacter jejuni subsp. doylei 269.97	5389766
YP_001398924.1	CDS	JJD26997_2007	NC_009707.1	1770107	1770829	D	identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein	1770107..1770829	Campylobacter jejuni subsp. doylei 269.97	5389949
YP_001398925.1	CDS	JJD26997_2008	NC_009707.1	1770832	1771722	D	identified by match to protein family HMM PF02470; ABC transporter periplasmic substrate-binding protein	1770832..1771722	Campylobacter jejuni subsp. doylei 269.97	5390336
YP_001398926.1	CDS	JJD26997_2009	NC_009707.1	1771722	1772321	D	putative lipoprotein	1771722..1772321	Campylobacter jejuni subsp. doylei 269.97	5389962
YP_001398927.1	CDS	map	NC_009707.1	1773054	1773812	R	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase	complement(1773054..1773812)	Campylobacter jejuni subsp. doylei 269.97	5390039
YP_001398928.1	CDS	murI	NC_009707.1	1773822	1774565	R	converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase	complement(1773822..1774565)	Campylobacter jejuni subsp. doylei 269.97	5389080
YP_001398929.1	CDS	nhaA	NC_009707.1	1775038	1776207	R	exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter	complement(1775038..1776207)	Campylobacter jejuni subsp. doylei 269.97	5388756
YP_001398930.1	CDS	nhaA-2	NC_009707.1	1776204	1777352	R	identified by match to protein family HMM PF06965; match to protein family HMM TIGR00773; Na+/H+ antiporter NhaA	complement(1776204..1777352)	Campylobacter jejuni subsp. doylei 269.97	5389630
YP_001398931.1	CDS	JJD26997_2017	NC_009707.1	1777495	1777677	R	identified by glimmer; putative; hypothetical protein	complement(1777495..1777677)	Campylobacter jejuni subsp. doylei 269.97	5390517
YP_001398932.1	CDS	JJD26997_2018	NC_009707.1	1778302	1780392	D	identified by match to protein family HMM PF03239; FTR1 family iron permease	1778302..1780392	Campylobacter jejuni subsp. doylei 269.97	5389388
YP_001398933.1	CDS	JJD26997_2019	NC_009707.1	1780389	1780928	D	hypothetical protein	1780389..1780928	Campylobacter jejuni subsp. doylei 269.97	5389658
YP_001398934.1	CDS	JJD26997_2020	NC_009707.1	1781011	1782411	D	identified by match to protein family HMM PF04945; hypothetical protein	1781011..1782411	Campylobacter jejuni subsp. doylei 269.97	5389087
YP_001398935.1	CDS	JJD26997_2021	NC_009707.1	1782401	1783690	D	identified by match to protein family HMM PF02687; ABC transporter permease	1782401..1783690	Campylobacter jejuni subsp. doylei 269.97	5390384
YP_001398936.1	CDS	JJD26997_2022	NC_009707.1	1783680	1784798	D	identified by match to protein family HMM PF02687; ABC transporter permease	1783680..1784798	Campylobacter jejuni subsp. doylei 269.97	5389531
YP_001398937.1	CDS	JJD26997_2023	NC_009707.1	1784798	1785448	D	identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein	1784798..1785448	Campylobacter jejuni subsp. doylei 269.97	5390420
YP_001398938.1	CDS	JJD26997_2024	NC_009707.1	1785445	1785690	D	ABC transporter ATP-binding protein	1785445..1785690	Campylobacter jejuni subsp. doylei 269.97	5390503
YP_001398939.1	CDS	JJD26997_2025	NC_009707.1	1785687	1786175	D	identified by match to protein family HMM PF00578; match to protein family HMM PF08534; putative thiredoxin-like protein	1785687..1786175	Campylobacter jejuni subsp. doylei 269.97	5389180
YP_001398940.1	CDS	JJD26997_2026	NC_009707.1	1786136	1786639	D	identified by match to protein family HMM PF08534; thioredoxin family protein	1786136..1786639	Campylobacter jejuni subsp. doylei 269.97	5389414
YP_001398941.1	CDS	JJD26997_2027	NC_009707.1	1786648	1787085	R	identified by match to protein family HMM PF04214; hypothetical protein	complement(1786648..1787085)	Campylobacter jejuni subsp. doylei 269.97	5388921
YP_001398942.1	CDS	JJD26997_2030	NC_009707.1	1788609	1788809	D	identified by glimmer; putative; hypothetical protein	1788609..1788809	Campylobacter jejuni subsp. doylei 269.97	5389031
YP_001398943.1	CDS	JJD26997_2031	NC_009707.1	1788858	1789004	R	identified by glimmer; putative; hypothetical protein	complement(1788858..1789004)	Campylobacter jejuni subsp. doylei 269.97	5390235
YP_001398944.1	CDS	JJD26997_2032	NC_009707.1	1789025	1789282	R	identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; plasmid addiction system poison protein	complement(1789025..1789282)	Campylobacter jejuni subsp. doylei 269.97	5389006
YP_001398945.1	CDS	JJD26997_2033	NC_009707.1	1789282	1789515	R	identified by glimmer; putative; hypothetical protein	complement(1789282..1789515)	Campylobacter jejuni subsp. doylei 269.97	5390122
YP_001398946.1	CDS	JJD26997_2034	NC_009707.1	1789526	1789894	R	hypothetical protein	complement(1789526..1789894)	Campylobacter jejuni subsp. doylei 269.97	5389752
YP_001398947.1	CDS	JJD26997_2035	NC_009707.1	1789891	1790118	R	hypothetical protein	complement(1789891..1790118)	Campylobacter jejuni subsp. doylei 269.97	5388903
YP_001398948.1	CDS	JJD26997_2036	NC_009707.1	1790318	1790515	R	identified by glimmer; putative; hypothetical protein	complement(1790318..1790515)	Campylobacter jejuni subsp. doylei 269.97	5389533
YP_001398949.1	CDS	JJD26997_2043	NC_009707.1	1791295	1792143	R	catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase	complement(1791295..1792143)	Campylobacter jejuni subsp. doylei 269.97	5389394
YP_001398950.1	CDS	JJD26997_2044	NC_009707.1	1792143	1792805	R	hypothetical protein	complement(1792143..1792805)	Campylobacter jejuni subsp. doylei 269.97	5389764
YP_001398951.1	CDS	JJD26997_2045	NC_009707.1	1792795	1792998	R	hypothetical protein	complement(1792795..1792998)	Campylobacter jejuni subsp. doylei 269.97	5390142
YP_001398952.1	CDS	eno	NC_009707.1	1793064	1794308	R	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase	complement(1793064..1794308)	Campylobacter jejuni subsp. doylei 269.97	5390458
YP_001398953.1	CDS	recA	NC_009707.1	1794308	1795339	R	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A	complement(1794308..1795339)	Campylobacter jejuni subsp. doylei 269.97	5389201
YP_001398954.1	CDS	JJD26997_2048	NC_009707.1	1795444	1796304	D	identified by match to protein family HMM PF02642; hypothetical protein	1795444..1796304	Campylobacter jejuni subsp. doylei 269.97	5390256
YP_001398955.1	CDS	fliQ	NC_009707.1	1796316	1796585	D	with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ	1796316..1796585	Campylobacter jejuni subsp. doylei 269.97	5389017
YP_001398956.1	CDS	murB	NC_009707.1	1796612	1797358	D	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase	1796612..1797358	Campylobacter jejuni subsp. doylei 269.97	5389245
YP_001398957.1	CDS	JJD26997_2052	NC_009707.1	1801247	1803001	D	identified by match to protein family HMM PF07719; hypothetical protein	1801247..1803001	Campylobacter jejuni subsp. doylei 269.97	5390204
YP_001398958.1	CDS	JJD26997_2053	NC_009707.1	1803005	1803766	R	hypothetical protein	complement(1803005..1803766)	Campylobacter jejuni subsp. doylei 269.97	5389412
YP_001398959.1	CDS	cysQ	NC_009707.1	1803812	1804576	R	identified by match to protein family HMM PF00459; cysQ protein	complement(1803812..1804576)	Campylobacter jejuni subsp. doylei 269.97	5390066
YP_001398960.1	CDS	gltA	NC_009707.1	1804657	1805925	R	identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798; citrate synthase	complement(1804657..1805925)	Campylobacter jejuni subsp. doylei 269.97	5390568
YP_001398961.1	CDS	JJD26997_2056	NC_009707.1	1806039	1807214	R	identified by match to protein family HMM PF00999; sodium/hydrogen exchanger family protein	complement(1806039..1807214)	Campylobacter jejuni subsp. doylei 269.97	5388933
YP_001398962.1	CDS	bioB	NC_009707.1	1807195	1808031	R	catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase	complement(1807195..1808031)	Campylobacter jejuni subsp. doylei 269.97	5389132
YP_001398963.1	CDS	topA	NC_009707.1	1808033	1810135	R	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I	complement(1808033..1810135)	Campylobacter jejuni subsp. doylei 269.97	5389573
YP_001398964.1	CDS	JJD26997_2059	NC_009707.1	1810311	1811582	D	identified by match to protein family HMM PF07690; major facilitator superfamily protein	1810311..1811582	Campylobacter jejuni subsp. doylei 269.97	5390065
YP_001398965.1	CDS	JJD26997_2060	NC_009707.1	1811650	1813662	R	identified by match to protein family HMM PF02129; match to protein family HMM PF08530; match to protein family HMM TIGR00976; dipeptidyl-peptidase	complement(1811650..1813662)	Campylobacter jejuni subsp. doylei 269.97	5389413
YP_001398966.1	CDS	JJD26997_2061	NC_009707.1	1813646	1814899	R	identified by match to protein family HMM PF07690; major facilitator family protein	complement(1813646..1814899)	Campylobacter jejuni subsp. doylei 269.97	5390305
YP_001398967.1	CDS	secY	NC_009707.1	1815092	1816357	R	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY	complement(1815092..1816357)	Campylobacter jejuni subsp. doylei 269.97	5389961
YP_001398968.1	CDS	rplO	NC_009707.1	1816357	1816749	R	late assembly protein; 50S ribosomal protein L15	complement(1816357..1816749)	Campylobacter jejuni subsp. doylei 269.97	5390127
YP_001398969.1	CDS	rpsE	NC_009707.1	1816754	1817197	R	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5	complement(1816754..1817197)	Campylobacter jejuni subsp. doylei 269.97	5390229
YP_001398970.1	CDS	rplR	NC_009707.1	1817209	1817565	R	binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18	complement(1817209..1817565)	Campylobacter jejuni subsp. doylei 269.97	5389809
YP_001398971.1	CDS	rplF	NC_009707.1	1817575	1818111	R	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6	complement(1817575..1818111)	Campylobacter jejuni subsp. doylei 269.97	5389289
YP_001398972.1	CDS	rpsH	NC_009707.1	1818189	1818584	R	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8	complement(1818189..1818584)	Campylobacter jejuni subsp. doylei 269.97	5388709
YP_001398973.1	CDS	rpsN	NC_009707.1	1818594	1818779	R	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14	complement(1818594..1818779)	Campylobacter jejuni subsp. doylei 269.97	5388618
YP_001398974.1	CDS	rplE	NC_009707.1	1818781	1819326	R	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5	complement(1818781..1819326)	Campylobacter jejuni subsp. doylei 269.97	5389979
YP_001398975.1	CDS	rplX	NC_009707.1	1819330	1819563	R	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24	complement(1819330..1819563)	Campylobacter jejuni subsp. doylei 269.97	5389649
YP_001398976.1	CDS	rplN	NC_009707.1	1819563	1819931	R	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14	complement(1819563..1819931)	Campylobacter jejuni subsp. doylei 269.97	5388795
YP_001398977.1	CDS	rpsQ	NC_009707.1	1819931	1820182	R	primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17	complement(1819931..1820182)	Campylobacter jejuni subsp. doylei 269.97	5389496
YP_001398978.1	CDS	rpmC	NC_009707.1	1820192	1820377	R	one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29	complement(1820192..1820377)	Campylobacter jejuni subsp. doylei 269.97	5390296
YP_001398979.1	CDS	rplP	NC_009707.1	1820364	1820789	R	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16	complement(1820364..1820789)	Campylobacter jejuni subsp. doylei 269.97	5389329
YP_001398980.1	CDS	rpsC	NC_009707.1	1820792	1821493	R	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3	complement(1820792..1821493)	Campylobacter jejuni subsp. doylei 269.97	5389607
YP_001398981.1	CDS	rplV	NC_009707.1	1821493	1821918	R	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22	complement(1821493..1821918)	Campylobacter jejuni subsp. doylei 269.97	5390557
YP_001398982.1	CDS	rpsS	NC_009707.1	1821929	1822210	R	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19	complement(1821929..1822210)	Campylobacter jejuni subsp. doylei 269.97	5388646
YP_001398983.1	CDS	rplB	NC_009707.1	1822212	1823042	R	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2	complement(1822212..1823042)	Campylobacter jejuni subsp. doylei 269.97	5390079
YP_001398984.1	CDS	rplW	NC_009707.1	1823044	1823325	R	binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23	complement(1823044..1823325)	Campylobacter jejuni subsp. doylei 269.97	5389989
YP_001398985.1	CDS	rplD	NC_009707.1	1823328	1823942	R	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4	complement(1823328..1823942)	Campylobacter jejuni subsp. doylei 269.97	5390251
YP_001398986.1	CDS	rplC	NC_009707.1	1823939	1824514	R	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3	complement(1823939..1824514)	Campylobacter jejuni subsp. doylei 269.97	5390360
YP_001398987.1	CDS	rpsJ	NC_009707.1	1824524	1824835	R	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10	complement(1824524..1824835)	Campylobacter jejuni subsp. doylei 269.97	5389516
YP_001398988.1	CDS	JJD26997_2083	NC_009707.1	1825032	1825793	R	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein	complement(1825032..1825793)	Campylobacter jejuni subsp. doylei 269.97	5389593
YP_001398989.1	CDS	JJD26997_2084	NC_009707.1	1825826	1827814	R	identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; metallo-beta-lactamase family protein	complement(1825826..1827814)	Campylobacter jejuni subsp. doylei 269.97	5389862
YP_001398990.1	CDS	ksgA	NC_009707.1	1827789	1828589	R	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase	complement(1827789..1828589)	Campylobacter jejuni subsp. doylei 269.97	5389604
YP_001398991.1	CDS	JJD26997_2086	NC_009707.1	1828670	1829206	D	hypothetical protein	1828670..1829206	Campylobacter jejuni subsp. doylei 269.97	5390294
YP_001398992.1	CDS	JJD26997_2087	NC_009707.1	1829229	1830299	D	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N	1829229..1830299	Campylobacter jejuni subsp. doylei 269.97	5388794
YP_001398993.1	CDS	JJD26997_2093	NC_009707.1	1830936	1831466	D	identified by match to protein family HMM PF00583; acetyltransferase	1830936..1831466	Campylobacter jejuni subsp. doylei 269.97	5390147
YP_001398994.1	CDS	leuD	NC_009707.1	1831446	1832048	R	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit	complement(1831446..1832048)	Campylobacter jejuni subsp. doylei 269.97	5390340
YP_001398995.1	CDS	leuC	NC_009707.1	1832050	1833456	R	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit	complement(1832050..1833456)	Campylobacter jejuni subsp. doylei 269.97	5389305
YP_001398996.1	CDS	leuB	NC_009707.1	1833449	1834525	R	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase	complement(1833449..1834525)	Campylobacter jejuni subsp. doylei 269.97	5390293
YP_001398997.1	CDS	leuA	NC_009707.1	1834522	1836057	R	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase	complement(1834522..1836057)	Campylobacter jejuni subsp. doylei 269.97	5388584
YP_001398998.1	CDS	queF	NC_009707.1	1836465	1836845	R	NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase	complement(1836465..1836845)	Campylobacter jejuni subsp. doylei 269.97	5389154
YP_001398999.1	CDS	JJD26997_2099	NC_009707.1	1837005	1837604	D	identified by match to protein family HMM PF07992; hypothetical protein	1837005..1837604	Campylobacter jejuni subsp. doylei 269.97	5390086
YP_001399000.1	CDS	JJD26997_2100	NC_009707.1	1838499	1838720	R	identified by match to protein family HMM PF01206; hypothetical protein	complement(1838499..1838720)	Campylobacter jejuni subsp. doylei 269.97	5388936
YP_001399001.1	CDS	JJD26997_2101	NC_009707.1	1838730	1839764	R	identified by match to protein family HMM PF04143; inner membrane protein YeeE	complement(1838730..1839764)	Campylobacter jejuni subsp. doylei 269.97	5389261
YP_001399002.1	CDS	metX	NC_009707.1	1839776	1841047	R	identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326; homoserine O-acetyltransferase	complement(1839776..1841047)	Campylobacter jejuni subsp. doylei 269.97	5388626
YP_001399003.1	CDS	flgE	NC_009707.1	1841472	1844099	R	the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE	complement(1841472..1844099)	Campylobacter jejuni subsp. doylei 269.97	5388630
YP_001399004.1	CDS	ruvC	NC_009707.1	1844529	1845011	R	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase	complement(1844529..1845011)	Campylobacter jejuni subsp. doylei 269.97	5389948
JJD26997_0033	tRNA	JJD26997_0033	NC_009707.1	41005	41080	D	tRNA-Ala	41005..41080	Campylobacter jejuni subsp. doylei 269.97	5390396
JJD26997_0034	tRNA	JJD26997_0034	NC_009707.1	41089	41165	D	tRNA-Ile	41089..41165	Campylobacter jejuni subsp. doylei 269.97	5390222
JJD26997_0182	tRNA	JJD26997_0182	NC_009707.1	171341	171415	D	tRNA-Glu	171341..171415	Campylobacter jejuni subsp. doylei 269.97	5388774
JJD26997_0343	tRNA	JJD26997_0343	NC_009707.1	303152	303241	D	tRNA-Ser	303152..303241	Campylobacter jejuni subsp. doylei 269.97	5390372
JJD26997_0442	tRNA	JJD26997_0442	NC_009707.1	388949	389024	D	tRNA-Phe	388949..389024	Campylobacter jejuni subsp. doylei 269.97	5390125
JJD26997_0443	tRNA	JJD26997_0443	NC_009707.1	389132	389208	R	tRNA-Met	complement(389132..389208)	Campylobacter jejuni subsp. doylei 269.97	5390410
JJD26997_0500	tRNA	JJD26997_0500	NC_009707.1	449462	449536	D	tRNA-Asn	449462..449536	Campylobacter jejuni subsp. doylei 269.97	5388708
JJD26997_0777	tRNA	JJD26997_0777	NC_009707.1	702387	702463	R	tRNA-Arg	complement(702387..702463)	Campylobacter jejuni subsp. doylei 269.97	5390136
JJD26997_0877	tRNA	JJD26997_0877	NC_009707.1	777553	777638	R	tRNA-Leu	complement(777553..777638)	Campylobacter jejuni subsp. doylei 269.97	5388640
JJD26997_1032	tRNA	JJD26997_1032	NC_009707.1	907961	908047	D	tRNA-Leu	907961..908047	Campylobacter jejuni subsp. doylei 269.97	5389655
JJD26997_1033	tRNA	JJD26997_1033	NC_009707.1	908058	908132	D	tRNA-Gly	908058..908132	Campylobacter jejuni subsp. doylei 269.97	5389392
JJD26997_1099	tRNA	JJD26997_1099	NC_009707.1	970958	971032	D	tRNA-Gln	970958..971032	Campylobacter jejuni subsp. doylei 269.97	5390570
JJD26997_1100	tRNA	JJD26997_1100	NC_009707.1	971067	971142	D	tRNA-Met	971067..971142	Campylobacter jejuni subsp. doylei 269.97	5390035
JJD26997_1156	tRNA	JJD26997_1156	NC_009707.1	1011214	1011290	R	tRNA-Asp	complement(1011214..1011290)	Campylobacter jejuni subsp. doylei 269.97	5390328
JJD26997_1157	tRNA	JJD26997_1157	NC_009707.1	1011342	1011417	R	tRNA-Val	complement(1011342..1011417)	Campylobacter jejuni subsp. doylei 269.97	5389336
JJD26997_1158	tRNA	JJD26997_1158	NC_009707.1	1011424	1011499	R	tRNA-Arg	complement(1011424..1011499)	Campylobacter jejuni subsp. doylei 269.97	5389093
JJD26997_1159	tRNA	JJD26997_1159	NC_009707.1	1011520	1011595	R	tRNA-Lys	complement(1011520..1011595)	Campylobacter jejuni subsp. doylei 269.97	5390377
JJD26997_1160	tRNA	JJD26997_1160	NC_009707.1	1011600	1011676	R	tRNA-Asp	complement(1011600..1011676)	Campylobacter jejuni subsp. doylei 269.97	5389622
JJD26997_1161	tRNA	JJD26997_1161	NC_009707.1	1011729	1011804	R	tRNA-Val	complement(1011729..1011804)	Campylobacter jejuni subsp. doylei 269.97	5388813
JJD26997_1162	tRNA	JJD26997_1162	NC_009707.1	1011812	1011887	R	tRNA-Lys	complement(1011812..1011887)	Campylobacter jejuni subsp. doylei 269.97	5388586
JJD26997_1273	tRNA	JJD26997_1273	NC_009707.1	1120506	1120582	R	tRNA-Ile	complement(1120506..1120582)	Campylobacter jejuni subsp. doylei 269.97	5388686
JJD26997_1274	tRNA	JJD26997_1274	NC_009707.1	1120591	1120666	R	tRNA-Ala	complement(1120591..1120666)	Campylobacter jejuni subsp. doylei 269.97	5390262
JJD26997_1441	tRNA	JJD26997_1441	NC_009707.1	1278650	1278726	R	tRNA-Arg	complement(1278650..1278726)	Campylobacter jejuni subsp. doylei 269.97	5390010
JJD26997_1463	tRNA	JJD26997_1463	NC_009707.1	1302737	1302812	R	tRNA-Trp	complement(1302737..1302812)	Campylobacter jejuni subsp. doylei 269.97	5389102
JJD26997_1466	tRNA	JJD26997_1466	NC_009707.1	1304305	1304379	R	tRNA-Thr	complement(1304305..1304379)	Campylobacter jejuni subsp. doylei 269.97	5389192
JJD26997_1467	tRNA	JJD26997_1467	NC_009707.1	1304486	1304562	R	tRNA-Gly	complement(1304486..1304562)	Campylobacter jejuni subsp. doylei 269.97	5389393
JJD26997_1468	tRNA	JJD26997_1468	NC_009707.1	1304569	1304654	R	tRNA-Tyr	complement(1304569..1304654)	Campylobacter jejuni subsp. doylei 269.97	5389140
JJD26997_1469	tRNA	JJD26997_1469	NC_009707.1	1304704	1304779	R	tRNA-Thr	complement(1304704..1304779)	Campylobacter jejuni subsp. doylei 269.97	5390376
JJD26997_1522	tRNA	JJD26997_1522	NC_009707.1	1348308	1348384	R	tRNA-Ile	complement(1348308..1348384)	Campylobacter jejuni subsp. doylei 269.97	5389224
JJD26997_1523	tRNA	JJD26997_1523	NC_009707.1	1348393	1348468	R	tRNA-Ala	complement(1348393..1348468)	Campylobacter jejuni subsp. doylei 269.97	5389274
JJD26997_1847	tRNA	JJD26997_1847	NC_009707.1	1625778	1625875	R	tRNA-Sec	complement(1625778..1625875)	Campylobacter jejuni subsp. doylei 269.97	5390408
JJD26997_1978	tRNA	JJD26997_1978	NC_009707.1	1746222	1746296	D	tRNA-Gly	1746222..1746296	Campylobacter jejuni subsp. doylei 269.97	5389890
JJD26997_1979	tRNA	JJD26997_1979	NC_009707.1	1746306	1746394	D	tRNA-Leu	1746306..1746394	Campylobacter jejuni subsp. doylei 269.97	5390375
JJD26997_1980	tRNA	JJD26997_1980	NC_009707.1	1746413	1746486	D	tRNA-Cys	1746413..1746486	Campylobacter jejuni subsp. doylei 269.97	5389408
JJD26997_1981	tRNA	JJD26997_1981	NC_009707.1	1746508	1746595	D	tRNA-Ser	1746508..1746595	Campylobacter jejuni subsp. doylei 269.97	5390033
JJD26997_2038	tRNA	JJD26997_2038	NC_009707.1	1790814	1790898	R	tRNA-Leu	complement(1790814..1790898)	Campylobacter jejuni subsp. doylei 269.97	5389236
JJD26997_2039	tRNA	JJD26997_2039	NC_009707.1	1790903	1790979	R	tRNA-Arg	complement(1790903..1790979)	Campylobacter jejuni subsp. doylei 269.97	5388902
JJD26997_2040	tRNA	JJD26997_2040	NC_009707.1	1790993	1791069	R	tRNA-Arg	complement(1790993..1791069)	Campylobacter jejuni subsp. doylei 269.97	5388827
JJD26997_2041	tRNA	JJD26997_2041	NC_009707.1	1791074	1791150	R	tRNA-His	complement(1791074..1791150)	Campylobacter jejuni subsp. doylei 269.97	5389233
JJD26997_2042	tRNA	JJD26997_2042	NC_009707.1	1791175	1791252	R	tRNA-Pro	complement(1791175..1791252)	Campylobacter jejuni subsp. doylei 269.97	5389337
JJD26997_2088	tRNA	JJD26997_2088	NC_009707.1	1830408	1830484	R	tRNA-Met	complement(1830408..1830484)	Campylobacter jejuni subsp. doylei 269.97	5389335
JJD26997_2089	tRNA	JJD26997_2089	NC_009707.1	1830620	1830707	D	tRNA-Ser	1830620..1830707	Campylobacter jejuni subsp. doylei 269.97	5390592
JJD26997_2090	tRNA	JJD26997_2090	NC_009707.1	1830754	1830829	D	tRNA-Ala	1830754..1830829	Campylobacter jejuni subsp. doylei 269.97	5390223
JJD26997_2091	tRNA	JJD26997_2091	NC_009707.1	1830833	1830908	D	tRNA-Val	1830833..1830908	Campylobacter jejuni subsp. doylei 269.97	5389608
JJD26997_0032	rRNA	rrsA	NC_009707.1	39388	40900	D	16S ribosomal RNA	39388..40900	Campylobacter jejuni subsp. doylei 269.97	5390598
JJD26997_0040	rRNA	rrlG	NC_009707.1	43380	46417	D	23S ribosomal RNA	join(43380..44580,44676..46417)	Campylobacter jejuni subsp. doylei 269.97	5388924
JJD26997_0041	rRNA	rrfE	NC_009707.1	46701	46820	D	5S ribosomal RNA	46701..46820	Campylobacter jejuni subsp. doylei 269.97	5389378
JJD26997_1263	rRNA	rrfF	NC_009707.1	1107786	1107905	R	5S ribosomal RNA	complement(1107786..1107905)	Campylobacter jejuni subsp. doylei 269.97	5390324
JJD26997_1264	rRNA	rrlH	NC_009707.1	1108189	1111265	R	23S ribosomal RNA	complement(join(1108189..1109930,1110066..1111265))	Campylobacter jejuni subsp. doylei 269.97	5389772
JJD26997_1275	rRNA	rrsB	NC_009707.1	1120771	1122283	R	16S ribosomal RNA	complement(1120771..1122283)	Campylobacter jejuni subsp. doylei 269.97	5390345
JJD26997_1519	rRNA	rrfC	NC_009707.1	1344267	1344386	R	5S ribosomal RNA	complement(1344267..1344386)	Campylobacter jejuni subsp. doylei 269.97	5390578
JJD26997_1520	rRNA	rrlC	NC_009707.1	1344670	1347746	R	23S ribosomal RNA	complement(join(1344670..1346411,1346547..1347746))	Campylobacter jejuni subsp. doylei 269.97	5389103
JJD26997_1524	rRNA	rrsC	NC_009707.1	1348573	1350085	R	16S ribosomal RNA	complement(1348573..1350085)	Campylobacter jejuni subsp. doylei 269.97	5390263