-- dump date   	20140619_022139
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_002574620.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_002574621.1	binds the polymerase to DNA and acts as a sliding clamp
YP_002574622.1	negatively supercoils closed circular double-stranded DNA
YP_002574623.1	Pfam match to PF00962.13 A_deaminase
YP_002574624.1	Pfam match to PF04373.4 DUF511
YP_002574625.1	NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis
YP_002574626.1	Pfam matches to PF00174.10 Oxidored_molyb, and to PF03404.7 Mo-co_dimer
YP_002574629.1	Pfam match to PF03831.5 PhnA
YP_002574630.1	flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor
YP_002574631.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_002574632.1	Pfam matches to PF01368.11 DHH, and to PF02272.10 DHHA1
YP_002574633.1	Pfam match to PF01464.11 SLT
YP_002574634.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_002574635.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_002574636.1	Pfam matches to PF01479.16 S4, and to PF00849.13 PseudoU_synth_2
YP_002574637.1	Pfam matches to PF00753.18 Lactamase_B, and to PF07521.3 RMMBL
YP_002574638.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_002574640.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_002574641.1	Pfam match to PF04055.12 Radical_SAM
YP_002574642.1	Pfam match to PF00849.13 PseudoU_synth_2
YP_002574643.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_002574644.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_002574645.1	Pfam match to PF03169.6 OPT
YP_002574646.1	Pfam match to PF02673.9 BacA
YP_002574647.1	catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002574648.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_002574649.1	Pfam match to PF02086.6 MethyltransfD12
YP_002574650.1	Pfam match to PF08279.3 HTH_11
YP_002574652.1	Pfam matches to PF07728.5 AAA_5, and to PF03382.5 DUF285
YP_002574653.1	Pfam match to PF01632.10 Ribosomal_L35p
YP_002574654.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_002574655.1	catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA
YP_002574656.1	Pfam match to PF00950.8 ABC-3
YP_002574657.1	Pfam match to PF00005.18 ABC_tran
YP_002574658.1	Pfam match to PF01297.8 SBP_bac_9
YP_002574660.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_002574662.1	Pfam match to PF01219.10 DAGK_prokar
YP_002574663.1	Pfam matches to PF08019.3 DUF1705, and to PF00884.14 Sulfatase
YP_002574664.1	Pfam match to PF03372.14 Exo_endo_phos
YP_002574665.1	Pfam match to PF03382.5 DUF285
YP_002574666.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_002574668.1	Pfam matches to PF00081.13 Sod_Fe_N, and to PF02777.9 Sod_Fe_C
YP_002574669.1	Pfam match to PF03606.6 DcuC
YP_002574670.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_002574671.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_002574672.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_002574675.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_002574676.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_002574677.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_002574678.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_002574679.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_002574680.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_002574681.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_002574682.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_002574683.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_002574684.1	one of the stabilizing components for the large ribosomal subunit
YP_002574685.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_002574686.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_002574687.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_002574688.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_002574689.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_002574690.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_002574691.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_002574692.1	binds 5S rRNA along with protein L5 and L25
YP_002574693.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_002574694.1	late assembly protein
YP_002574695.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_002574696.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_002574697.1	Pfam match to PF00710.11 Asparaginase
YP_002574698.1	Pfam matches to PF06397.3 Desulfoferrod_N, and to PF02915.8 Rubrerythrin
YP_002574700.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_002574702.1	Pfam matches to PF03315.6 SDH_beta, and to PF03313.6 SDH_alpha
YP_002574703.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_002574704.1	Pfam match to PF00015.12 MCPsignal
YP_002574705.1	Pfam match to PF03150.5 CCP_MauG
YP_002574706.1	Pfam match to PF07690.7 MFS_1
YP_002574707.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_002574708.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_002574709.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_002574710.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_002574711.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_002574712.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_002574713.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_002574714.1	long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors
YP_002574715.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_002574716.1	catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate
YP_002574718.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_002574719.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_002574720.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_002574721.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis
YP_002574722.1	Pfam match to PF00015.12 MCPsignal
YP_002574724.1	the hook connects flagellar basal body to the flagellar filament
YP_002574726.1	Pfam match to PF07690.7 MFS_1
YP_002574727.1	Pfam match to PF01106.8 NifU
YP_002574729.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_002574730.1	Pfam match to PF02575.7 DUF149
YP_002574732.1	Pfam match to PF00348.8 polyprenyl_synt
YP_002574733.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_002574734.1	Pfam match to PF02405.7 DUF140
YP_002574735.1	Pfam match to PF00005.18 ABC_tran
YP_002574736.1	Pfam match to PF02470.11 MCE
YP_002574739.1	Pfam match to PF00080.11 Sod_Cu
YP_002574740.1	Pfam match to PF00165.14 HTH_AraC
YP_002574743.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_002574744.1	Pfam match to PF02518.17 HATPase_c
YP_002574745.1	Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C
YP_002574746.1	Pfam match to PF06518.2 DUF1104
YP_002574748.1	Pfam match to PF00730.16 HhH-GPD
YP_002574749.1	Pfam match to PF04055.12 Radical_SAM
YP_002574752.1	Pfam match to PF02254.9 TrkA_N
YP_002574753.1	Pfam match to PF02386.7 TrkH
YP_002574754.1	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB
YP_002574755.1	Pfam match to PF00206.11 Lyase_1
YP_002574756.1	Pfam match to PF00015.12 MCPsignal
YP_002574759.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_002574761.1	Pfam match to PF07690.7 MFS_1
YP_002574766.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_002574767.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_002574768.1	Pfam match to PF02642.5 DUF191
YP_002574769.1	with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus
YP_002574770.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_002574772.1	Pfam match to PF00459.16 Inositol_P
YP_002574773.1	Pfam match to PF00999.12 Na_H_Exchanger
YP_002574774.1	catalyzes the formation of biotin from dethiobiotin and sulfur
YP_002574775.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_002574776.1	Pfam match to PF01973.9 DUF115
YP_002574777.1	FlaB; structural flagella protein; in Helicobacter the flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions
YP_002574778.1	FlaA; structural flagella protein; in Helicobacter the flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions
YP_002574779.1	Pfam match to PF01973.9 DUF115
YP_002574780.1	Pfam match to PF01973.9 DUF115
YP_002574781.1	Pfam match to PF01973.9 DUF115
YP_002574782.1	Pfam match to PF01973.9 DUF115
YP_002574783.1	Pfam matches to PF03102.5 NeuB, and to PF08666.3 SAF
YP_002574785.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002574787.1	Pfam match to PF02541.7 Ppx-GppA
YP_002574788.1	Pfam match to PF00037.18 Fer4
YP_002574789.1	Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C
YP_002574791.1	Pfam match to PF02660.6 DUF205
YP_002574792.1	Pfam match to PF03150.5 CCP_MauG
YP_002574797.1	Pfam match to PF00829.12 Ribosomal_L21p
YP_002574798.1	involved in the peptidyltransferase reaction during translation
YP_002574799.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_002574800.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_002574801.1	catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon
YP_002574802.1	Pfam match to PF01656.14 CbiA
YP_002574803.1	Pfam match to PF02195.9 ParBc
YP_002574804.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.
YP_002574805.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_002574806.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The delta subunit is part of the catalytic core of the ATP synthase complex
YP_002574807.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_002574808.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_002574809.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_002574810.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_002574811.1	Pfam match to PF01618.7 MotA_ExbB
YP_002574812.1	Pfam match to PF02472.7 ExbD
YP_002574814.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_002574815.1	Pfam match to PF00691.11 OmpA
YP_002574817.1	Pfam match to PF00254.19 FKBP_C
YP_002574819.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_002574820.1	Pfam match to PF01171.11 ATP_bind_3
YP_002574824.1	Pfam match to PF01207.8 Dus
YP_002574826.1	Pfam match to PF01258.8 zf-dskA_traR
YP_002574827.1	Pfam match to PF02590.8 DUF163
YP_002574828.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_002574829.1	Pfam matches to PF07244.6 Surf_Ag_VNR, and to PF07244.6 Surf_Ag_VNR
YP_002574830.1	catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate
YP_002574831.1	Pfam match to PF01551.13 Peptidase_M23
YP_002574832.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_002574834.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_002574836.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_002574837.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_002574838.1	Pfam match to PF02576.8 DUF150
YP_002574841.1	Pfam match to PF00383.13 dCMP_cyt_deam_1
YP_002574842.1	Pfam match to PF01343.9 Peptidase_S49
YP_002574843.1	Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline
YP_002574844.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_002574845.1	Pfam match to PF00557.15 Peptidase_M24
YP_002574846.1	Pfam match to PF01288.11 HPPK
YP_002574847.1	positive regulator of class III flagellar genes
YP_002574848.1	Pfam match to PF01656.14 CbiA
YP_002574850.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes
YP_002574851.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_002574852.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002574853.1	Pfam match to PF03641.5 Lysine_decarbox
YP_002574854.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_002574856.1	Pfam match to PF04608.4 PgpA
YP_002574858.1	Pfam match to PF00072.15 Response_reg
YP_002574859.1	bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations
YP_002574862.1	Pfam match to PF00210.15 Ferritin
YP_002574863.1	catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate
YP_002574864.1	Pfam match to PF00483.14 NTP_transferase
YP_002574865.1	Pfam match to PF01205.10 UPF0029
YP_002574868.1	Pfam matches to PF00005.18 ABC_tran, and to PF00005.18 ABC_tran
YP_002574870.1	Pfam matches to PF02878.7 PGM_PMM_I, and to PF02879.7 PGM_PMM_II
YP_002574871.1	Pfam match to PF01171.11 ATP_bind_3
YP_002574872.1	Pfam matches to PF00919.11 UPF0004, and to PF04055.12 Radical_SAM
YP_002574873.1	recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1
YP_002574874.1	Pfam match to PF00582.17 Usp
YP_002574875.1	Pfam match to PF07885.7 Ion_trans_2
YP_002574876.1	Pfam match to PF03382.5 DUF285
YP_002574878.1	Pfam match to PF03601.5 Cons_hypoth698
YP_002574879.1	Pfam matches to PF00126.18 HTH_1, and to PF03466.11 LysR_substrate
YP_002574880.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_002574881.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_002574882.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_002574883.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002574884.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_002574885.1	interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring
YP_002574886.1	Pfam match to PF08348.2 PAS_6
YP_002574887.1	Pfam match to PF00199.10 Catalase
YP_002574888.1	Pfam match to PF00023.21 Ank
YP_002574889.1	Pfam match to PF00206.11 Lyase_1
YP_002574890.1	Pfam match to PF08348.2 PAS_6
YP_002574891.1	Pfam match to PF01042.12 Ribonuc_L-PSP
YP_002574892.1	Pfam match to PF03606.6 DcuC
YP_002574893.1	Pfam match to PF01053.11 Cys_Met_Meta_PP
YP_002574894.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_002574895.1	Pfam match to PF03972.5 MmgE_PrpD
YP_002574896.1	Pfam match to PF04023.5 FeoA
YP_002574897.1	Pfam matches to PF01926.14 MMR_HSR1, and to PF02421.9 FeoB_N
YP_002574898.1	Pfam match to PF03070.7 TENA_THI-4
YP_002574899.1	carries the fatty acid chain in fatty acid biosynthesis
YP_002574900.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_002574901.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_002574903.1	Pfam match to PF01061.15 ABC2_membrane
YP_002574904.1	Pfam match to PF00005.18 ABC_tran
YP_002574906.1	Pfam match to PF02563.7 Poly_export
YP_002574907.1	Pfam matches to PF01380.13 SIS, and to PF00571.19 CBS
YP_002574908.1	Pfam match to PF01467.17 CTP_transf_2
YP_002574910.1	Pfam matches to PF07719.8 TPR_2, and to PF00515.19 TPR_1
YP_002574913.1	pseudogene
YP_002574917.1	Pfam match to PF00702.17 Hydrolase
YP_002574922.1	contains poly-GC tract leading to end point slips (G9/G10/G11)
YP_002574923.1	contains poly-GC tract leading to end point slips; Pfam match to PF08241.3 Methyltransf_11
YP_002574924.1	Pfam match to PF08241.3 Methyltransf_11
YP_002574926.1	Pfam match to PF00117.19 GATase
YP_002574928.1	converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis
YP_002574929.1	Pfam matches to PF05159.5 Capsule_synth, and to PF05159.5 Capsule_synth
YP_002574930.1	Pfam match to PF05159.5 Capsule_synth
YP_002574933.1	Pfam match to PF00067.13 p450
YP_002574935.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_002574937.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_002574938.1	Pfam match to PF04028.4 DUF374
YP_002574943.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_002574944.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit
YP_002574945.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_002574946.1	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_002574947.1	Pfam match to PF00350.14 Dynamin_N
YP_002574949.1	Pfam match to PF04973.3 NMN_transporter
YP_002574950.1	Pfam match to PF01243.11 Pyridox_oxidase
YP_002574951.1	Pfam match to PF02525.8 Flavodoxin_2
YP_002574952.1	Pfam match to PF01638.8 DUF24
YP_002574953.1	Pfam match to PF08212.3 Lipocalin_2
YP_002574954.1	Pfam matches to PF08240.3 ADH_N, and to PF00107.17 ADH_zinc_N
YP_002574955.1	Pfam matches to PF04313.5 HSDR_N, and to PF04851.6 ResIII
YP_002574958.1	Pfam matches to PF01420.10 Methylase_S, and to PF01420.10 Methylase_S
YP_002574960.1	Pfam matches to PF03453.8 MoeA_N, and to PF00994.15 MoCF_biosynth
YP_002574961.1	Pfam match to PF02391.8 MoaE
YP_002574962.1	Pfam match to PF02597.11 ThiS
YP_002574963.1	Pfam matches to PF07732.6 Cu-oxidase_3, and to PF07731.5 Cu-oxidase_2
YP_002574964.1	Pfam match to PF00278.13 Orn_DAP_Arg_deC
YP_002574968.1	Pfam matches to PF04879.7 Molybdop_Fe4S4, and to PF00384.13 Molybdopterin
YP_002574969.1	Pfam match to PF00037.18 Fer4
YP_002574970.1	Pfam match to PF00126.18 HTH_1
YP_002574971.1	Pfam match to PF01206.8 SirA
YP_002574972.1	Pfam match to PF02769.13 AIRS_C
YP_002574973.1	Pfam matches to PF01619.9 Pro_dh, and to PF00171.13 Aldedh
YP_002574974.1	Pfam match to PF00474.8 SSF
YP_002574975.1	Pfam match to PF01206.8 SirA
YP_002574976.1	Pfam matches to PF04143.5 DUF395, and to PF04143.5 DUF395
YP_002574977.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_002574980.1	Pfam match to PF04368.4 DUF507
YP_002574981.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_002574983.1	CcoN; FixN
YP_002574984.1	CcoO; FixO
YP_002574985.1	Pfam match to PF09672.1 Cbb3_Q_epsi
YP_002574986.1	Pfam matches to PF00034.12 Cytochrom_C, and to PF00034.12 Cytochrom_C
YP_002574991.1	Pfam match to PF00580.12 UvrD-helicase
YP_002574992.1	Pfam matches to PF02743.9 Cache_1, and to PF00672.16 HAMP
YP_002574993.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_002574994.1	forms a direct contact with the tRNA during translation
YP_002574995.1	Pfam match to PF00691.11 OmpA
YP_002574996.1	Pfam match to PF00702.17 Hydrolase
YP_002574997.1	Pfam matches to PF01855.10 POR_N, and to PF01558.9 POR
YP_002574999.1	Pfam match to PF00263.12 Secretin
YP_002575001.1	Pfam match to PF00437.11 GSPII_E
YP_002575002.1	pseudogene; Pfam match to PF00482.14 GSPII_F
YP_002575003.1	Pfam match to PF01925.10 DUF81
YP_002575004.1	Pfam match to PF09674.1 CHP02757
YP_002575005.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_002575009.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_002575010.1	Pfam match to PF03602.6 Cons_hypoth95
YP_002575014.1	catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP
YP_002575015.1	catalyzes the modification of U13 in tRNA(Glu)
YP_002575018.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_002575021.1	Pfam match to PF08761.2 dUTPase_2
YP_002575023.1	Pfam matches to PF08425.1 NiFe_dehyd_N, and to PF01058.13 Oxidored_q6
YP_002575024.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_002575025.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_002575026.1	Pfam matches to PF00044.15 Gp_dh_N, and to PF02800.11 Gp_dh_C
YP_002575027.1	Pfam match to PF01467.17 CTP_transf_2
YP_002575028.1	Pfam match to PF02410.6 DUF143
YP_002575029.1	Pfam matches to PF00515.19 TPR_1, and to PF00515.19 TPR_1
YP_002575033.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_002575034.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_002575036.1	Pfam match to PF04055.12 Radical_SAM
YP_002575037.1	Pfam match to PF00860.11 Xan_ur_permease
YP_002575038.1	Pfam match to PF00156.18 Pribosyltran
YP_002575039.1	Pfam matches to PF00384.13 Molybdopterin, and to PF01568.12 Molydop_binding
YP_002575042.1	Pfam match to PF07963.3 N_methyl
YP_002575043.1	Pfam match to PF05538.2 Campylo_MOMP
YP_002575044.1	Pfam match to PF03883.5 DUF328
YP_002575045.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_002575046.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_002575047.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_002575048.1	Modulates Rho-dependent transcription termination
YP_002575049.1	binds directly to 23S ribosomal RNA
YP_002575050.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_002575051.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_002575052.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_002575053.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_002575054.1	Pfam matches to PF04997.3 RNA_pol_Rpb1_1, and to PF00623.11 RNA_pol_Rpb1_2
YP_002575055.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_002575056.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_002575057.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_002575059.1	Pfam matches to PF01595.11 DUF21, and to PF00571.19 CBS
YP_002575060.1	in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope
YP_002575061.1	Pfam match to PF00474.8 SSF
YP_002575062.1	Pfam match to PF03435.9 Saccharop_dh
YP_002575063.1	Pfam match to PF00528.13 BPD_transp_1
YP_002575064.1	Pfam match to PF04214.4 DUF411
YP_002575065.1	Pfam match to PF03544.5 TonB
YP_002575066.1	Pfam match to PF02472.7 ExbD
YP_002575067.1	Pfam match to PF01618.7 MotA_ExbB
YP_002575068.1	Pfam matches to PF07715.6 Plug, and to PF00593.15 TonB_dep_Rec
YP_002575069.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_002575070.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_002575071.1	Pfam matches to PF00122.11 E1-E2_ATPase, and to PF00702.17 Hydrolase
YP_002575072.1	Pfam match to PF03597.6 CcoS
YP_002575073.1	Pfam match to PF00034.12 Cytochrom_C
YP_002575074.1	pseudogene; Pfam match to PF08645.2 PNK3P
YP_002575075.1	Pfam match to PF01370.12 Epimerase
YP_002575076.1	Pfam matches to PF00294.15 PfkB, and to PF01467.17 CTP_transf_2
YP_002575077.1	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate
YP_002575078.1	Pfam matches to PF00224.12 PK, and to PF02887.7 PK_C
YP_002575079.1	Pfam match to PF01266.15 DAO
YP_002575080.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_002575084.1	Pfam match to PF02686.6 Glu-tRNAGln
YP_002575085.1	Pfam match to PF02674.7 Colicin_V
YP_002575086.1	Pfam match to PF01475.10 FUR
YP_002575087.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_002575088.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_002575089.1	Pfam match to PF08966.2 DUF1882
YP_002575090.1	Pfam match to PF05036.4 SPOR
YP_002575091.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_002575092.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_002575093.1	Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C
YP_002575094.1	Pfam match to PF02518.17 HATPase_c
YP_002575095.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_002575097.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_002575099.1	Pfam match to PF03600.7 CitMHS
YP_002575100.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_002575101.1	Pfam match to PF08242.3 Methyltransf_12
YP_002575103.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_002575104.1	Pfam match to PF06271.3 RDD
YP_002575105.1	Pfam match to PF04453.5 OstA_C
YP_002575107.1	Pfam matches to PF01138.12 RNase_PH, and to PF03725.6 RNase_PH_C
YP_002575110.1	participates with LolB in the incorporation of lipoprotein into the outer membrane
YP_002575111.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_002575112.1	Pfam matches to PF00072.15 Response_reg, and to PF00158.17 Sigma54_activat
YP_002575113.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_002575114.1	Pfam match to PF03350.7 UPF0114
YP_002575115.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_002575116.1	Pfam match to PF04055.12 Radical_SAM
YP_002575117.1	Pfam matches to PF00515.19 TPR_1, and to PF00515.19 TPR_1
YP_002575118.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002575119.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002575120.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_002575121.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_002575122.1	Pfam match to PF00892.11 DUF6
YP_002575123.1	Pfam match to PF00860.11 Xan_ur_permease
YP_002575124.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_002575125.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_002575126.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_002575127.1	type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_002575128.1	Pfam match to PF03724.7 META
YP_002575129.1	Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal
YP_002575130.1	involved in de novo purine biosynthesis
YP_002575131.1	Pfam match to PF00226.22 DnaJ
YP_002575132.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_002575133.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_002575135.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_002575136.1	Pfam match to PF01809.9 DUF37
YP_002575138.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_002575139.1	Pfam match to PF00583.15 Acetyltransf_1
YP_002575142.1	Pfam match to PF03061.13 4HBT
YP_002575145.1	Pfam match to PF05935.2 Arylsulfotrans
YP_002575146.1	pseudogene; Pfam match to PF03605.5 DcuA_DcuB
YP_002575148.1	Pfam match to PF00565.8 SNase
YP_002575151.1	Pfam match to PF08003.2 Methyltransf_9
YP_002575152.1	Pfam match to PF00669.11 Flagellin_N
YP_002575154.1	Pfam match to PF05175.5 MTS
YP_002575155.1	Pfam match to PF01435.9 Peptidase_M48
YP_002575156.1	Pfam matches to PF00005.18 ABC_tran, and to PF00005.18 ABC_tran
YP_002575157.1	Pfam match to PF00149.19 Metallophos
YP_002575158.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_002575161.1	Pfam match to PF07690.7 MFS_1
YP_002575164.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_002575166.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_002575167.1	Pfam match to PF00717.14 Peptidase_S24
YP_002575168.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_002575169.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_002575171.1	biotin carboxylase; catalyses the carboxylation of the carrier protein which then transfers the carboxyl group to form malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002575173.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_002575174.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_002575175.1	Pfam match to PF01098.10 FTSW_RODA_SPOVE
YP_002575176.1	Pfam match to PF00497.11 SBP_bac_3
YP_002575177.1	Pfam match to PF00266.10 Aminotran_5
YP_002575178.1	Pfam match to PF03008.5 DUF234
YP_002575179.1	Pfam matches to PF00512.16 HisKA, and to PF02518.17 HATPase_c
YP_002575180.1	Pfam match to PF00588.10 SpoU_methylase
YP_002575181.1	Pfam match to PF00005.18 ABC_tran
YP_002575182.1	Pfam match to PF00528.13 BPD_transp_1
YP_002575183.1	Pfam match to PF01235.8 Na_Ala_symp
YP_002575184.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_002575185.1	Pfam match to PF01551.13 Peptidase_M23
YP_002575186.1	Pfam match to PF02636.8 DUF185
YP_002575187.1	bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate
YP_002575188.1	Pfam match to PF01098.10 FTSW_RODA_SPOVE
YP_002575189.1	Pfam matches to PF01479.16 S4, and to PF00849.13 PseudoU_synth_2
YP_002575190.1	Pfam matches to PF00041.12 fn3, and to PF00041.12 fn3
YP_002575191.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_002575192.1	Pfam match to PF00005.18 ABC_tran
YP_002575194.1	Pfam match to PF01551.13 Peptidase_M23
YP_002575195.1	Catalyzes the phosphorylation of UMP to UDP
YP_002575196.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_002575197.1	Pfam matches to PF01966.13 HD, and to PF04607.8 RelA_SpoT
YP_002575198.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_002575199.1	Pfam match to PF03060.6 NPD
YP_002575200.1	Pfam match to PF01520.9 Amidase_3
YP_002575201.1	catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules
YP_002575203.1	Pfam match to PF02163.13 Peptidase_M50
YP_002575204.1	Pfam match to PF01066.12 CDP-OH_P_transf
YP_002575205.1	Acts on the hydroxyl group at position 7 of the steroid frame
YP_002575206.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_002575207.1	Pfam matches to PF00675.11 Peptidase_M16, and to PF05193.12 Peptidase_M16_C
YP_002575208.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_002575209.1	Pfam matches to PF00664.14 ABC_membrane, and to PF00005.18 ABC_tran
YP_002575210.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_002575211.1	Pfam match to PF03023.5 MVIN
YP_002575213.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_002575214.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_002575216.1	Pfam match to PF00561.11 Abhydrolase_1
YP_002575217.1	Pfam match to PF08245.3 Mur_ligase_M
YP_002575218.1	part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod
YP_002575219.1	Pfam match to PF01515.10 PTA_PTB
YP_002575220.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_002575221.1	Pfam match to PF03180.5 Lipoprotein_9
YP_002575222.1	Pfam match to PF01501.11 Glyco_transf_8
YP_002575223.1	Pfam match to PF00528.13 BPD_transp_1
YP_002575224.1	Pfam matches to PF00005.18 ABC_tran, and to PF09383.1 NIL
YP_002575225.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_002575226.1	Pfam match to PF00691.11 OmpA
YP_002575227.1	Pfam match to PF00719.10 Pyrophosphatase
YP_002575228.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_002575229.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_002575230.1	Pfam match to PF01513.12 NAD_kinase
YP_002575231.1	Pfam match to PF02463.10 SMC_N
YP_002575232.1	Pfam matches to PF00072.15 Response_reg, and to PF00990.12 GGDEF
YP_002575233.1	Pfam match to PF01026.12 TatD_DNase
YP_002575234.1	Pfam matches to PF01464.11 SLT, and to PF01476.11 LysM
YP_002575235.1	Pfam matches to PF03330.9 DPBB_1, and to PF05036.4 SPOR
YP_002575238.1	Pfam match to PF03968.5 OstA
YP_002575239.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_002575241.1	Pfam matches to PF03717.6 PBP_dimer, and to PF00905.13 Transpeptidase
YP_002575242.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_002575243.1	Pfam match to PF00902.9 TatC
YP_002575244.1	mediates the export of protein precursors bearing twin-arginine signal peptides
YP_002575245.1	Pfam match to PF03773.4 DUF318
YP_002575246.1	Pfam match to PF01022.11 HTH_5
YP_002575247.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_002575248.1	hydrolyzes diadenosine polyphosphate
YP_002575249.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_002575251.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_002575252.1	Pfam match to PF00809.13 Pterin_bind
YP_002575253.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_002575254.1	Pfam match to PF01728.10 FtsJ
YP_002575255.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_002575256.1	Pfam match to PF08242.3 Methyltransf_12
YP_002575257.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_002575258.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_002575260.1	Pfam match to PF00156.18 Pribosyltran
YP_002575262.1	Pfam match to PF02502.9 LacAB_rpiB
YP_002575263.1	Pfam match to PF01339.8 CheB_methylest
YP_002575264.1	Pfam match to PF01739.9 CheR
YP_002575265.1	Pfam match to PF07690.7 MFS_1
YP_002575266.1	Pfam match to PF04055.12 Radical_SAM
YP_002575267.1	Pfam match to PF05193.12 Peptidase_M16_C
YP_002575268.1	catalyzes branch migration in Holliday junction intermediates
YP_002575269.1	Pfam match to PF00027.20 cNMP_binding
YP_002575270.1	Pfam match to PF00528.13 BPD_transp_1
YP_002575271.1	Pfam match to PF00528.13 BPD_transp_1
YP_002575272.1	Pfam match to PF00005.18 ABC_tran
YP_002575273.1	Pfam match to PF00497.11 SBP_bac_3
YP_002575274.1	Pfam match to PF07690.7 MFS_1
YP_002575275.1	Pfam match to PF02080.12 TrkA_C
YP_002575276.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_002575277.1	Pfam match to PF00924.9 MS_channel
YP_002575278.1	Pfam matches to PF00919.11 UPF0004, and to PF04055.12 Radical_SAM
YP_002575279.1	Pfam match to PF00004.20 AAA
YP_002575280.1	forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis
YP_002575281.1	Pfam match to PF00581.11 Rhodanese
YP_002575283.1	molecular chaperone
YP_002575284.1	Pfam match to PF02537.6 CRCB
YP_002575285.1	Pfam match to PF01553.12 Acyltransferase
YP_002575287.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_002575288.1	Pfam match to PF02700.5 PurS
YP_002575289.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_002575290.1	Pfam matches to PF00595.15 PDZ, and to PF03572.9 Peptidase_S41
YP_002575291.1	Pfam matches to PF02861.11 Clp_N, and to PF00004.20 AAA
YP_002575292.1	Pfam matches to PF08425.1 NiFe_dehyd_N, and to PF01058.13 Oxidored_q6
YP_002575293.1	Pfam match to PF00374.10 NiFeSe_Hases
YP_002575294.1	Pfam match to PF01292.11 Ni_hydr_CYTB
YP_002575295.1	Pfam match to PF01750.9 HycI
YP_002575297.1	charges one glutamine molecule and pairs it with tRNA(Gln)
YP_002575298.1	Pfam match to PF02325.8 YGGT
YP_002575299.1	Pfam match to PF01464.11 SLT
YP_002575301.1	Pfam match to PF03205.5 MobB
YP_002575302.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_002575304.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_002575307.1	Pfam match to PF04264.4 YceI
YP_002575308.1	Pfam match to PF06508.4 ExsB
YP_002575309.1	Pfam match to PF02130.8 UPF0054
YP_002575312.1	Pfam match to PF01694.13 Rhomboid
YP_002575313.1	Pfam match to PF00300.13 PGAM
YP_002575314.1	Pfam match to PF01177.13 Asp_Glu_race
YP_002575315.1	Pfam match to PF00589.13 Phage_integrase
YP_002575316.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_002575317.1	Pfam matches to PF03453.8 MoeA_N, and to PF00994.15 MoCF_biosynth
YP_002575320.1	required for the assembly of the flagellar basal body P-ring
YP_002575321.1	catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate
YP_002575322.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_002575323.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_002575324.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_002575325.1	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis
YP_002575327.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_002575329.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_002575330.1	Pfam match to PF00005.18 ABC_tran
YP_002575331.1	Pfam match to PF02367.8 UPF0079
YP_002575332.1	Pfam match to PF01479.16 S4
YP_002575333.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_002575334.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_002575335.1	heat shock protein involved in degradation of misfolded proteins
YP_002575336.1	heat shock protein involved in degradation of misfolded proteins
YP_002575337.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_002575341.1	flagellin specific chaperone
YP_002575342.1	Pfam matches to PF02465.9 FliD_N, and to PF07196.4 Flagellin_IN
YP_002575343.1	Pfam match to PF03646.6 FlaG
YP_002575344.1	Pfam match to PF01977.7 UbiD
YP_002575345.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_002575347.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_002575348.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_002575349.1	Pfam match to PF00348.8 polyprenyl_synt
YP_002575351.1	Pfam match to PF09442.1 DUF2018
YP_002575352.1	Pfam match to PF00702.17 Hydrolase
YP_002575354.1	Pfam matches to PF00999.12 Na_H_Exchanger, and to PF02254.9 TrkA_N
YP_002575355.1	Pfam match to PF00376.14 MerR
YP_002575356.1	Pfam matches to PF00226.22 DnaJ, and to PF01556.9 DnaJ_C
YP_002575357.1	Pfam match to PF00089.17 Trypsin
YP_002575358.1	Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C
YP_002575359.1	Pfam matches to PF00672.16 HAMP, and to PF00512.16 HisKA
YP_002575360.1	Pfam match to PF00580.12 UvrD-helicase
YP_002575361.1	Pfam match to PF08534.1 Redoxin
YP_002575362.1	Pfam match to PF00325.11 Crp
YP_002575364.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_002575365.1	Pfam match to PF01155.10 HypA
YP_002575366.1	Pfam matches to PF00586.15 AIRS, and to PF02769.13 AIRS_C
YP_002575367.1	Pfam match to PF01924.7 HypD
YP_002575368.1	Pfam match to PF01455.9 HupF_HypC
YP_002575369.1	Pfam match to PF02492.10 cobW
YP_002575370.1	Pfam matches to PF00708.9 Acylphosphatase, and to PF07503.3 zf-HYPF
YP_002575372.1	Pfam match to PF01863.8 DUF45
YP_002575373.1	Pfam matches to PF01554.9 MatE, and to PF01554.9 MatE
YP_002575374.1	contains poly-GC tract -leading to end point slips (G9/G10)
YP_002575376.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_002575377.1	Pfam match to PF00528.13 BPD_transp_1
YP_002575378.1	Pfam match to PF00528.13 BPD_transp_1
YP_002575380.1	Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C
YP_002575381.1	Pfam matches to PF00512.16 HisKA, and to PF02518.17 HATPase_c
YP_002575382.1	Pfam match to PF00210.15 Ferritin
YP_002575383.1	Pfam match to PF00717.14 Peptidase_S24
YP_002575387.1	Pfam match to PF01578.11 Cytochrom_C_asm
YP_002575389.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_002575390.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_002575391.1	catalyzes the formation of 2-acetolactate from pyruvate, leucine resistant; also known as acetolactate synthase 3 large subunit
YP_002575392.1	Pfam match to PF01558.9 POR
YP_002575393.1	Pfam match to PF02775.12 TPP_enzyme_C
YP_002575394.1	Pfam match to PF01855.10 POR_N
YP_002575395.1	Pfam matches to PF00037.18 Fer4, and to PF00037.18 Fer4
YP_002575396.1	Pfam matches to PF00056.14 Ldh_1_N, and to PF02866.9 Ldh_1_C
YP_002575398.1	Pfam match to PF02618.7 ADC_lyase
YP_002575399.1	contains alternative start; Pfam matches to PF01580.9 FtsK_SpoIIIE, and to PF09397.1 Ftsk_gamma
YP_002575400.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook
YP_002575401.1	Pfam match to PF00589.13 Phage_integrase
YP_002575411.1	Pfam match to PF07022.4 Phage_CI_repr
YP_002575413.1	Pfam match to PF00929.15 Exonuc_X-T
YP_002575414.1	Pfam match to PF04313.5 HSDR_N
YP_002575415.1	Pfam match to PF07693.5 KAP_NTPase
YP_002575420.1	Pfam match to PF07087.2 DUF1353
YP_002575429.1	Pfam match to PF05065.4 Phage_capsid
YP_002575439.1	Pfam match to PF04860.3 Phage_portal
YP_002575440.1	Pfam match to PF09669.1 Phage_pRha
YP_002575444.1	Pfam match to PF03354.6 Terminase_1
YP_002575446.1	Pfam match to PF01844.14 HNH
YP_002575449.1	Pfam match to PF08279.3 HTH_11
YP_002575452.1	Pfam match to PF04371.6 PAD_porph
YP_002575454.1	Pfam match to PF00004.20 AAA
YP_002575457.1	Pfam match to PF07728.5 AAA_5
YP_002575459.1	Pfam matches to PF07656.2 KWG, and to PF07656.2 KWG
YP_002575463.1	Pfam match to PF07656.2 KWG
YP_002575464.1	Pfam match to PF03235.5 DUF262
YP_002575465.1	Pfam match to PF03235.5 DUF262
YP_002575466.1	Pfam match to PF02146.8 SIR2
YP_002575468.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_002575470.1	Pfam match to PF01965.15 DJ-1_PfpI
YP_002575471.1	Pfam match to PF00795.13 CN_hydrolase
YP_002575472.1	Pfam match to PF01545.12 Cation_efflux
YP_002575473.1	Pfam match to PF04371.6 PAD_porph
YP_002575475.1	Pfam match to PF00753.18 Lactamase_B
YP_002575476.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_002575477.1	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_002575478.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_002575479.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_002575480.1	Pfam match to PF00497.11 SBP_bac_3
YP_002575481.1	Pfam match to PF00528.13 BPD_transp_1
YP_002575482.1	Pfam match to PF02683.6 DsbD
YP_002575483.1	Pfam match to PF03473.8 MOSC
YP_002575484.1	Pfam match to PF00070.18 Pyr_redox
YP_002575485.1	Pfam match to PF00209.9 SNF
YP_002575486.1	Pfam match to PF00691.11 OmpA
YP_002575488.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_002575489.1	Pfam match to PF00639.12 Rotamase
YP_002575490.1	Pfam match to PF00730.16 HhH-GPD
YP_002575491.1	Pfam match to PF03616.5 Glt_symporter
YP_002575492.1	Pfam match to PF02321.9 OEP
YP_002575493.1	Pfam matches to PF00005.18 ABC_tran, and to PF02687.12 FtsX
YP_002575494.1	Pfam match to PF00529.11 HlyD
YP_002575495.1	Pfam match to PF00881.15 Nitroreductase
YP_002575496.1	Pfam matches to PF07690.7 MFS_1, and to PF01553.12 Acyltransferase
YP_002575497.1	Pfam match to PF00070.18 Pyr_redox
YP_002575498.1	Pfam match to PF05175.5 MTS
YP_002575499.1	Pfam match to PF03692.6 UPF0153
YP_002575501.1	Pfam match to PF00218.12 IGPS
YP_002575502.1	Pfam match to PF01230.14 HIT
YP_002575503.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_002575504.1	Pfam match to PF01384.11 PHO4
YP_002575505.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_002575506.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_002575507.1	Pfam match to PF02541.7 Ppx-GppA
YP_002575508.1	Pfam match to PF09424.1 YqeY
YP_002575509.1	Pfam match to PF01223.14 Endonuclease_NS
YP_002575510.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_002575511.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_002575512.1	Acts as a negative regulator of the grpE-dnaK-dnaJ and groELS class I heat shock operons by preventing heat-shock induction
YP_002575516.1	membrane protein involved in the flagellar export apparatus
YP_002575517.1	Pfam match to PF02082.11 Rrf2
YP_002575518.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_002575519.1	Pfam match to PF01189.8 Nol1_Nop2_Fmu
YP_002575520.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_002575521.1	Pfam match to PF02481.6 SMF
YP_002575522.1	Pfam match to PF04748.4 Polysacc_deac_2
YP_002575523.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_002575524.1	Pfam match to PF00773.10 RNB
YP_002575525.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_002575526.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_002575527.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_002575528.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_002575529.1	Pfam match to PF01914.8 MarC
YP_002575531.1	Pfam match to PF07963.3 N_methyl
YP_002575533.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_002575534.1	binds to flagellin and appears to stabilize flagellin during flagella assembly
YP_002575536.1	Pfam matches to PF00004.20 AAA, and to PF05362.4 Lon_C
YP_002575537.1	Pfam match to PF00015.12 MCPsignal
YP_002575538.1	Pfam match to PF08447.2 PAS_3
YP_002575539.1	Pfam match to PF08447.2 PAS_3
YP_002575540.1	catalyzes the formation of 2-oxobutanoate from L-threonine
YP_002575541.1	Pfam match to PF02629.10 CoA_binding
YP_002575542.1	Pfam match to PF07690.7 MFS_1
YP_002575543.1	catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs
YP_002575544.1	Pfam match to PF03553.5 Na_H_antiporter
YP_002575545.1	Pfam match to PF00106.16 adh_short
YP_002575546.1	Pfam match to PF00023.21 Ank
YP_002575547.1	Pfam match to PF01035.11 DNA_binding_1
YP_002575548.1	Pfam match to PF00892.11 DUF6
YP_002575549.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_002575550.1	Pfam match to PF03739.5 YjgP_YjgQ
YP_002575551.1	Pfam match to PF06750.4 DiS_P_DiS
YP_002575552.1	Pfam match to PF01255.10 Prenyltransf
YP_002575554.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_002575555.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_002575556.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_002575557.1	Pfam match to PF03547.9 Mem_trans
YP_002575558.1	Pfam match to PF00425.9 Chorismate_bind
YP_002575559.1	Pfam match to PF00117.19 GATase
YP_002575560.1	Pfam matches to PF02321.9 OEP, and to PF02321.9 OEP
YP_002575562.1	Pfam match to PF00873.10 ACR_tran
YP_002575563.1	Pfam match to PF03960.6 ArsC
YP_002575564.1	Pfam match to PF01474.7 DAHP_synth_2
YP_002575566.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_002575567.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_002575568.1	Pfam match to PF05239.7 PRC
YP_002575570.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_002575571.1	Pfam matches to PF02881.10 SRP54_N, and to PF00448.13 SRP54
YP_002575572.1	Pfam match to PF00849.13 PseudoU_synth_2
YP_002575573.1	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A
YP_002575574.1	Pfam match to PF02591.6 DUF164
YP_002575575.1	Pfam match to PF01784.9 NIF3
YP_002575576.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_002575578.1	Pfam match to PF00731.11 AIRC
YP_002575579.1	Pfam match to PF01136.10 Peptidase_U32
YP_002575581.1	Pfam matches to PF03951.10 Gln-synt_N, and to PF00120.15 Gln-synt_C
YP_002575582.1	Pfam matches to PF01743.11 PolyA_pol, and to PF00551.10 Formyl_trans_N
YP_002575585.1	Pfam match to PF07690.7 MFS_1
YP_002575589.1	Pfam match to PF03892.5 NapB
YP_002575590.1	part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA
YP_002575591.1	part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway
YP_002575592.1	periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC
YP_002575593.1	makes up the distal portion of the flagellar basal body rod
YP_002575594.1	Pfam match to PF00460.11 Flg_bb_rod
YP_002575595.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_002575596.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_002575598.1	Pfam match to PF02335.6 Cytochrom_C552
YP_002575599.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_002575600.1	3'-5' exonuclease of DNA polymerase III
YP_002575601.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_002575602.1	required for 70S ribosome assembly
YP_002575603.1	Pfam matches to PF07885.7 Ion_trans_2, and to PF02254.9 TrkA_N
YP_002575604.1	Pfam match to PF04325.4 DUF465
YP_002575605.1	Pfam match to PF00015.12 MCPsignal
YP_002575606.1	Pfam match to PF00293.19 NUDIX
YP_002575607.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_002575608.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_002575610.1	Pfam match to PF02482.10 Ribosomal_S30AE
YP_002575611.1	Pfam match to PF00730.16 HhH-GPD
YP_002575612.1	Pfam matches to PF02559.7 CarD_TRCF, and to PF00270.20 DEAD
YP_002575613.1	Pfam match to PF04519.4 DUF583
YP_002575614.1	Pfam match to PF01551.13 Peptidase_M23
YP_002575615.1	Pfam match to PF08245.3 Mur_ligase_M
YP_002575618.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_002575620.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_002575621.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_002575622.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_002575623.1	Transfers the fatty acyl group on membrane lipoproteins
YP_002575624.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_002575625.1	involved in the import of serine and threonine coupled with the import of sodium
YP_002575626.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_002575627.1	Pfam matches to PF08439.1 Peptidase_M3_N, and to PF01432.11 Peptidase_M3
YP_002575629.1	Pfam match to PF00580.12 UvrD-helicase
YP_002575630.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_002575631.1	Pfam match to PF02599.7 CsrA
YP_002575632.1	catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis
YP_002575633.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_002575634.1	Pfam match to PF00085.11 Thioredoxin
YP_002575635.1	Pfam match to PF02617.8 ClpS
YP_002575636.1	Pfam matches to PF00004.20 AAA, and to PF07724.5 AAA_2
YP_002575637.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_002575638.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella
YP_002575639.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_002575640.1	forms a junction between the M-ring and FlgB during flagella biosynthesis
YP_002575641.1	Pfam matches to PF03717.6 PBP_dimer, and to PF00905.13 Transpeptidase
YP_002575642.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_002575643.1	Pfam match to PF01408.13 GFO_IDH_MocA
YP_002575644.1	Pfam match to PF01041.8 DegT_DnrJ_EryC1
YP_002575645.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002575646.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_002575647.1	Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase
YP_002575648.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_002575649.1	Pfam match to PF01794.10 Ferric_reduct
YP_002575651.1	Pfam matches to PF00403.17 HMA, and to PF00122.11 E1-E2_ATPase
YP_002575652.1	Pfam match to PF00893.10 Multi_Drug_Res
YP_002575653.1	Pfam match to PF00893.10 Multi_Drug_Res
YP_002575654.1	Pfam match to PF01709.11 DUF28
YP_002575655.1	Pfam match to PF00160.12 Pro_isomerase
YP_002575657.1	Pfam match to PF09335.2 SNARE_assoc
YP_002575658.1	Pfam match to PF06738.3 DUF1212
YP_002575660.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_002575661.1	Pfam match to PF02416.7 MttA_Hcf106
YP_002575662.1	Essential for recycling GMP and indirectly, cGMP
YP_002575664.1	FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus
YP_002575665.1	Pfam match to PF00005.18 ABC_tran
YP_002575666.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_002575667.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_002575669.1	Pfam matches to PF00033.10 Cytochrom_B_N, and to PF00032.8 Cytochrom_B_C
YP_002575670.1	Pfam match to PF00355.17 Rieske
YP_002575671.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_002575672.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_002575673.1	Pfam match to PF02578.6 DUF152
YP_002575675.1	Pfam matches to PF00512.16 HisKA, and to PF02518.17 HATPase_c
YP_002575676.1	Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C
YP_002575680.1	Pfam match to PF01402.12 RHH_1
YP_002575681.1	Pfam match to PF05538.2 Campylo_MOMP
YP_002575682.1	Pfam match to PF00034.12 Cytochrom_C
YP_002575683.1	Pfam match to PF01094.19 ANF_receptor
YP_002575684.1	Pfam match to PF01094.19 ANF_receptor
YP_002575685.1	Pfam match to PF02653.7 BPD_transp_2
YP_002575686.1	Pfam match to PF02653.7 BPD_transp_2
YP_002575687.1	Pfam match to PF00005.18 ABC_tran
YP_002575688.1	Pfam match to PF00005.18 ABC_tran
YP_002575689.1	Pfam match to PF01578.11 Cytochrom_C_asm
YP_002575691.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_002575693.1	Pfam matches to PF01554.9 MatE, and to PF01554.9 MatE
YP_002575694.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis
YP_002575695.1	Pfam match to PF02581.8 TMP-TENI
YP_002575696.1	Pfam match to PF02110.6 HK
YP_002575697.1	Pfam match to PF08543.3 Phos_pyr_kin
YP_002575698.1	Pfam match to PF01451.12 LMWPc
YP_002575700.1	Pfam match to PF02527.6 GidB
YP_002575701.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_002575702.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_002575704.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_002575705.1	Pfam matches to PF02754.7 CCG, and to PF02754.7 CCG
YP_002575707.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_002575709.1	Pfam match to PF04314.4 DUF461
YP_002575711.1	Pfam match to PF02630.5 SCO1-SenC
YP_002575712.1	Pfam match to PF02687.12 FtsX
YP_002575714.1	Pfam match to PF04164.4 DUF400
YP_002575715.1	negatively supercoils closed circular double-stranded DNA
YP_002575718.1	Pfam match to PF00939.10 Na_sulph_symp
YP_002575719.1	Pfam match to PF02581.8 TMP-TENI
YP_002575720.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center
YP_002575721.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_002575722.1	catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate
YP_002575723.1	Pfam match to PF02597.11 ThiS
YP_002575725.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_002575726.1	Pfam match to PF01810.9 LysE
YP_002575727.1	Pfam match to PF02146.8 SIR2
YP_002575728.1	MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange
YP_002575730.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_002575732.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_002575733.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002575734.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme
YP_002575735.1	Pfam match to PF02464.8 CinA
YP_002575737.1	Pfam match to PF08534.1 Redoxin
YP_002575738.1	Pfam match to PF00005.18 ABC_tran
YP_002575739.1	Pfam match to PF02687.12 FtsX
YP_002575740.1	Pfam match to PF02687.12 FtsX
YP_002575741.1	Pfam match to PF04945.4 YHS
YP_002575743.1	Pfam match to PF03239.5 FTR1
YP_002575744.1	Pfam match to PF01063.10 Aminotran_4
YP_002575748.1	Pfam match to PF01795.10 Methyltransf_5
YP_002575751.1	Pfam matches to PF02491.11 FtsA, and to PF02491.11 FtsA
YP_002575752.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_002575753.1	Pfam match to PF04095.7 NAPRTase
YP_002575754.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_002575755.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_002575756.1	Pfam match to PF07963.3 N_methyl
YP_002575759.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_002575760.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_002575761.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_002575763.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_002575764.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_002575765.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_002575766.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_002575767.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_002575768.1	Pfam match to PF01230.14 HIT
YP_002575769.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_002575770.1	Pfam matches to PF00682.10 HMGL-like, and to PF00364.13 Biotin_lipoyl
YP_002575771.1	Pfam match to PF00209.9 SNF
YP_002575772.1	Pfam match to PF00209.9 SNF
YP_002575773.1	Pfam match to PF00209.9 SNF
YP_002575774.1	Pfam match to PF00137.12 ATP-synt_C
YP_002575776.1	Pfam matches to PF08447.2 PAS_3, and to PF08447.2 PAS_3
YP_002575777.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_002575778.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_002575779.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002575780.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_002575782.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_002575783.1	Pfam match to PF00448.13 SRP54
YP_002575784.1	Pfam match to PF00578.12 AhpC-TSA
YP_002575785.1	Pfam match to PF01812.11 5-FTHF_cyc-lig
YP_002575786.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_002575787.1	Pfam match to PF09335.2 SNARE_assoc
YP_002575788.1	Pfam match to PF03772.7 Competence
YP_002575789.1	Pfam match to PF03631.6 Ribonuclease_BN
YP_002575790.1	Pfam matches to PF01565.14 FAD_binding_4, and to PF02913.10 FAD-oxidase_C
YP_002575792.1	Pfam match to PF01551.13 Peptidase_M23
YP_002575793.1	Pfam matches to PF00571.19 CBS, and to PF01769.7 MgtE
YP_002575794.1	Pfam match to PF08534.1 Redoxin
YP_002575795.1	unwinds double stranded DNA
YP_002575796.1	Pfam match to PF00291.16 PALP
YP_002575797.1	Pfam match to PF00216.12 Bac_DNA_binding
YP_002575798.1	Pfam match to PF01075.8 Glyco_transf_9
YP_002575799.1	Pfam match to PF00535.17 Glycos_transf_2
YP_002575801.1	Pfam match to PF02348.10 CTP_transf_3
YP_002575803.1	Pfam matches to PF00571.19 CBS, and to PF00483.14 NTP_transferase
YP_002575804.1	Pfam match to PF02585.8 PIG-L
YP_002575805.1	Pfam match to PF00551.10 Formyl_trans_N
YP_002575806.1	Pfam match to PF02350.10 Epimerase_2
YP_002575807.1	Pfam match to PF03102.5 NeuB
YP_002575808.1	Pfam match to PF00551.10 Formyl_trans_N
YP_002575809.1	Pfam match to PF01370.12 Epimerase
YP_002575811.1	Pfam match to PF00535.17 Glycos_transf_2
YP_002575812.1	Pfam match to PF00535.17 Glycos_transf_2
YP_002575813.1	Pfam match to PF00535.17 Glycos_transf_2
YP_002575814.1	Pfam match to PF05704.3 Caps_synth
YP_002575815.1	Pfam match to PF00535.17 Glycos_transf_2
YP_002575816.1	Pfam matches to PF00535.17 Glycos_transf_2, and to PF00535.17 Glycos_transf_2
YP_002575817.1	acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; essential for survival; plays a role in cell responses to environmental changes
YP_002575818.1	Pfam match to PF01075.8 Glyco_transf_9
YP_002575820.1	Pfam match to PF01370.12 Epimerase
YP_002575821.1	Pfam match to PF00005.18 ABC_tran
YP_002575822.1	Pfam match to PF00534.11 Glycos_transf_1
YP_002575823.1	Pfam match to PF00534.11 Glycos_transf_1
YP_002575824.1	Pfam match to PF02516.5 STT3
YP_002575825.1	Pfam match to PF00534.11 Glycos_transf_1
YP_002575826.1	Pfam match to PF02397.7 Bac_transf
YP_002575828.1	Pfam match to PF01041.8 DegT_DnrJ_EryC1
YP_002575829.1	Pfam match to PF02719.6 Polysacc_synt_2
YP_002575830.1	Pfam match to PF00072.15 Response_reg
YP_002575831.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_002575832.1	Pfam matches to PF06480.6 FtsH_ext, and to PF00004.20 AAA
YP_002575834.1	Pfam match to PF01066.12 CDP-OH_P_transf
YP_002575836.1	Pfam match to PF00817.11 IMS
YP_002575839.1	Pfam match to PF03061.13 4HBT
YP_002575840.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_002575844.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_002575845.1	Pfam match to PF01594.7 UPF0118
YP_002575846.1	Pfam match to PF07690.7 MFS_1
YP_002575847.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_002575848.1	Pfam match to PF02460.9 Patched
YP_002575849.1	Pfam match to PF05494.3 Tol_Tol_Ttg2
YP_002575850.1	Pfam match to PF04333.4 VacJ
YP_002575851.1	Pfam match to PF01547.16 SBP_bac_1
YP_002575853.1	Pfam match to PF00005.18 ABC_tran
YP_002575854.1	Pfam match to PF00037.18 Fer4
YP_002575855.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_002575856.1	Pfam matches to PF00009.18 GTP_EFTU, and to PF03144.16 GTP_EFTU_D2
YP_002575859.1	converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer
YP_002575860.1	Pfam match to PF02621.5 DUF178
YP_002575861.1	Pfam matches to PF00390.10 malic, and to PF03949.6 Malic_M
YP_002575862.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_002575863.1	Pfam match to PF09312.2 SurA_N
YP_002575864.1	biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002575865.1	Pfam match to PF00364.13 Biotin_lipoyl
YP_002575866.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_002575867.1	Pfam match to PF02719.6 Polysacc_synt_2
YP_002575868.1	Pfam match to PF01041.8 DegT_DnrJ_EryC1
YP_002575872.1	Pfam match to PF08242.3 Methyltransf_12
YP_002575874.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; paralogs which do not contain the N-X-R ACP-binding site motif
YP_002575880.1	Pfam match to PF00501.19 AMP-binding
YP_002575881.1	Pfam match to PF00551.10 Formyl_trans_N
YP_002575887.1	Pfam match to PF02348.10 CTP_transf_3
YP_002575889.1	Pfam match to PF00583.15 Acetyltransf_1
YP_002575891.1	Pfam match to PF02585.8 PIG-L
YP_002575892.1	Pfam match to PF00583.15 Acetyltransf_1
YP_002575893.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamide and glutamine to imidazole-glycerolphosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_002575894.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_002575896.1	Pfam match to PF01925.10 DUF81
YP_002575897.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_002575898.1	Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal
YP_002575899.1	Pfam match to PF00578.12 AhpC-TSA
YP_002575900.1	Pfam match to PF00037.18 Fer4
YP_002575901.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_002575903.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_002575904.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_002575905.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_002575906.1	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_002575907.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_002575908.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_002575909.1	Pfam match to PF07690.7 MFS_1
YP_002575910.1	Pfam match to PF01156.10 IU_nuc_hydro
YP_002575912.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_002575913.1	Pfam match to PF02600.7 DsbB
YP_002575914.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_002575915.1	Pfam match to PF02554.5 CstA
YP_002575916.1	Pfam match to PF04328.4 DUF466
YP_002575917.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_002575918.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_002575919.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_002575921.1	Pfam match to PF01475.10 FUR
YP_002575922.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_002575923.1	binds to and inhibits the function of flagella specific ATPase FliI
YP_002575924.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002575925.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_002575926.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_002575927.1	Pfam matches to PF01817.12 CM_2, and to PF00800.9 PDT
YP_002575929.1	Pfam matches to PF02784.7 Orn_Arg_deC_N, and to PF00278.13 Orn_DAP_Arg_deC
YP_002575930.1	Pfam match to PF03739.5 YjgP_YjgQ
YP_002575931.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_002575932.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_002575933.1	Important for the balance of metabolites in the pentose-phosphate pathway
YP_002575934.1	Pfam match to PF00702.17 Hydrolase
YP_002575935.1	Pfam match to PF01584.10 CheW
YP_002575936.1	Pfam matches to PF01627.14 Hpt, and to PF02895.5 H-kinase_dim
YP_002575937.1	Pfam matches to PF01584.10 CheW, and to PF00072.15 Response_reg
YP_002575939.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_002575940.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_002575941.1	Pfam match to PF03498.5 CDtoxinA
YP_002575942.1	pseudogene; Pfam match to PF03372.14 Exo_endo_phos
YP_002575943.1	Pfam match to PF03498.5 CDtoxinA
YP_002575944.1	catalyzes the release of the N-terminal amino acid from a tripeptide
YP_002575945.1	Pfam match to PF03606.6 DcuC
YP_002575946.1	alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family
YP_002575948.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_002575949.1	Pfam match to PF00899.12 ThiF
YP_002575950.1	Pfam match to PF00905.13 Transpeptidase
YP_002575951.1	Pfam match to PF02517.7 Abi
YP_002575953.1	Pfam match to PF04301.4 DUF452
YP_002575954.1	Pfam match to PF00155.12 Aminotran_1_2
YP_002575955.1	Pfam matches to PF08238.3 Sel1, and to PF08238.3 Sel1
YP_002575956.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_002575958.1	Pfam match to PF00893.10 Multi_Drug_Res
YP_002575959.1	Pfam match to PF00893.10 Multi_Drug_Res
YP_002575960.1	Pfam match to PF01112.9 Asparaginase_2
YP_002575962.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_002575963.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_002575964.1	functions in MreBCD complex in some organisms
YP_002575965.1	binds and unfolds substrates as part of the ClpXP protease
YP_002575966.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_002575967.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_002575968.1	Pfam match to PF02677.5 DUF208
YP_002575969.1	Pfam match to PF00578.12 AhpC-TSA
YP_002575970.1	Pfam match to PF01361.12 Tautomerase
YP_002575971.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_002575972.1	Pfam match to PF01145.16 Band_7
YP_002575975.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_002575976.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_002575978.1	Pfam match to PF07992.5 Pyr_redox_2
YP_002575979.1	Pfam match to PF00085.11 Thioredoxin
YP_002575980.1	Pfam match to PF02021.8 UPF0102
YP_002575981.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_002575982.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_002575985.1	Pfam matches to PF08032.3 SpoU_sub_bind, and to PF00588.10 SpoU_methylase
YP_002575986.1	Pfam match to PF00590.11 TP_methylase
YP_002575987.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_002575988.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_002575993.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_002575996.1	UbiA prenyltransferase catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin
YP_002575997.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_002575999.1	Pfam match to PF00361.11 Oxidored_q1
YP_002576000.1	Pfam match to PF00361.11 Oxidored_q1
YP_002576001.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_002576002.1	Pfam match to PF00420.15 Oxidored_q2
YP_002576003.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002576004.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002576005.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002576006.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_002576009.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002576010.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_002576011.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_002576012.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_002576013.1	Pfam match to PF00005.18 ABC_tran
YP_002576014.1	Pfam match to PF00005.18 ABC_tran
YP_002576015.1	Pfam match to PF00528.13 BPD_transp_1
YP_002576016.1	Pfam match to PF00528.13 BPD_transp_1
YP_002576017.1	Pfam match to PF00496.13 SBP_bac_5
YP_002576018.1	Pfam match to PF02028.8 BCCT
YP_002576019.1	Pfam match to PF02589.6 DUF162
YP_002576020.1	Pfam match to PF02589.6 DUF162
YP_002576021.1	Pfam matches to PF02754.7 CCG, and to PF02754.7 CCG
YP_002576022.1	Pfam match to PF02652.5 Lactate_perm
YP_002576024.1	fusion of CJ0031 and CJ0032
YP_002576026.1	Pfam matches to PF00384.13 Molybdopterin, and to PF01568.12 Molydop_binding
YP_002576028.1	Pfam match to PF03741.7 TerC
YP_002576029.1	Pfam match to PF00551.10 Formyl_trans_N
YP_002576030.1	Pfam matches to PF03853.6 YjeF_N, and to PF01256.8 Carb_kinase
YP_002576031.1	Pfam match to PF02646.7 RmuC
YP_002576032.1	Pfam match to PF01936.9 DUF88
YP_002576033.1	Pfam match to PF01078.12 Mg_chelatase
YP_002576034.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_002576035.1	Pfam match to PF00990.12 GGDEF
YP_002576036.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_002576037.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_002576038.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_002576039.1	involved in type III protein export during flagellum assembly
YP_002576043.1	Pfam match to PF00266.10 Aminotran_5
YP_002576044.1	Pfam matches to PF01592.7 NifU_N, and to PF04324.6 Fer2_BFD
YP_002576045.1	Pfam match to PF06965.3 Na_H_antiport_1
YP_002576046.1	exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH
YP_002576047.1	Pfam matches to PF03458.4 UPF0126, and to PF03458.4 UPF0126
YP_002576049.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_002576050.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_002576051.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_002576053.1	synthesizes RNA primers at the replication forks
YP_002576055.1	Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal
YP_002576056.1	Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase
YP_002576057.1	Pfam matches to PF01835.10 A2M_N, and to PF07703.5 A2M_N_2
YP_002576060.1	Pfam match to PF00924.9 MS_channel
YP_002576061.1	Pfam match to PF00484.10 Pro_CA
YP_002576062.1	Pfam match to PF01027.11 UPF0005
YP_002576063.1	Pfam match to PF03840.5 SecG
YP_002576064.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_002576065.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_002576066.1	Pfam match to PF06271.3 RDD
YP_002576067.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_002576068.1	Pfam match to PF02600.7 DsbB
YP_002576069.1	catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins
YP_002576070.1	Pfam match to PF00194.12 Carb_anhydrase
YP_002576072.1	Pfam matches to PF00009.18 GTP_EFTU, and to PF03144.16 GTP_EFTU_D2
YP_002576074.1	Pfam match to PF02120.7 Flg_hook
YP_002576075.1	Pfam match to PF03963.5 FlgD
YP_002576076.1	Pfam match to PF06429.4 DUF1078
YP_002576079.1	Pfam match to PF02661.9 Fic
YP_002576080.1	Pfam match to PF00005.18 ABC_tran
YP_002576081.1	Pfam matches to PF00528.13 BPD_transp_1, and to PF00528.13 BPD_transp_1
YP_002576082.1	Pfam match to PF01547.16 SBP_bac_1
YP_002576083.1	Pfam match to PF00042.13 Globin
YP_002576084.1	efflux pump for the antibacterial peptide microcin J25
YP_002576085.1	Pfam match to PF05860.4 Haemagg_act
YP_002576087.1	Pfam match to PF07963.3 N_methyl
YP_002576088.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_002576090.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_002576091.1	Pfam match to PF01148.11 CTP_transf_1
YP_002576093.1	Pfam match to PF05670.4 DUF814
YP_002576095.1	Pfam match to PF03553.5 Na_H_antiporter
YP_002576096.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_002576097.1	Pfam matches to PF02743.9 Cache_1, and to PF00015.12 MCPsignal
YP_002576098.1	Pfam match to PF00015.12 MCPsignal
YP_002576100.1	Pfam match to PF00004.20 AAA
YP_002576102.1	nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_002576103.1	Involved in the metabolism of aromatic amino acids
YP_002576104.1	Pfam match to PF03738.5 GSP_synth
YP_002576106.1	Pfam match to PF01810.9 LysE
YP_002576107.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_002576109.1	Pfam match to PF00440.14 TetR_N
YP_002576110.1	Pfam match to PF00529.11 HlyD
YP_002576111.1	Pfam match to PF00873.10 ACR_tran
YP_002576112.1	Pfam matches to PF02321.9 OEP, and to PF02321.9 OEP
YP_002576114.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_002576115.1	Pfam match to PF08241.3 Methyltransf_11
YP_002576116.1	Pfam match to PF03653.4 UPF0093
YP_002576117.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_002576118.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_002576120.1	Pfam match to PF00004.20 AAA
YP_002576121.1	Pfam matches to PF03713.4 DUF305, and to PF03713.4 DUF305
YP_002576123.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_002576124.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp18
YP_002576125.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp17 Pfam match to PF03432.5 Relaxase
YP_002576126.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp14 Pfam matches to PF02384.7 N6_Mtase, and to PF00176.14 SNF2_N
YP_002576127.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp27 Pfam match to PF00239.12 Resolvase
YP_002576129.1	similar to Campylobacter jejuni 81-176 pVir protein Cjp26 Pfam match to PF01656.14 CbiA
YP_002576132.1	Pfam match to PF04956.4 TrbC
YP_002576133.1	similar to Campylobacter jejuni 81-176 pTet protein CmgB3/4 Pfam matches to PF05101.4 VirB3, and to PF03135.5 CagE_TrbE_VirB
YP_002576134.1	similar to Campylobacter jejuni 81-176 pTet protein CmgB5 Pfam match to PF07996.2 T4SS
YP_002576135.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp32 Pfam match to PF09669.1 Phage_pRha
YP_002576136.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp33
YP_002576137.1	Pfam match to PF02498.8 Bro-N
YP_002576138.1	similar to Campylobacter jejuni 81-176 pTet protein CmgB6 Pfam match to PF04610.5 TrbL
YP_002576140.1	similar to Campylobacter jejuni 81-176 pTet protein CmgB8 Pfam match to PF04335.4 VirB8
YP_002576141.1	similar to Campylobacter jejuni 81-176 pTet protein CmgB9 Pfam match to PF03524.6 CagX
YP_002576142.1	similar to Campylobacter jejuni 81-176 pTet protein CmgB10 Pfam match to PF03743.5 TrbI
YP_002576143.1	similar to Campylobacter jejuni 81-176 pTet protein CmgB11 Pfam match to PF00437.11 GSPII_E
YP_002576145.1	similar to Campylobacter jejuni 81-176 pTet protein CmgD4 Pfam match to PF02534.5 TraG
YP_002576146.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp44
YP_002576147.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp45 Pfam match to PF07424.2 TrbM
YP_002576148.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp46
YP_002576149.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp47
YP_002576150.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp49 Pfam matches to PF01751.13 Toprim, and to PF01131.11 Topoisom_bac
YP_002576151.1	Pfam match to PF00436.16 SSB
YP_002576155.1	Pfam match to PF00239.12 Resolvase
YP_002576158.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp22 Pfam match to PF01751.13 Toprim
YP_002576159.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp21
YP_002576160.1	Pfam match to PF01850.12 PIN
YP_002576162.1	identical to Cla_a033
YP_002576163.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp22 Pfam match to PF01751.13 Toprim
YP_002576164.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp20
YP_002576165.1	similar to Campylobacter jejuni 81-176 pTet protein Cpp19