-- dump date 20140619_022137 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 306263000001 SEQ_END SEQ_END NC_012039.1 1525460 1525460 DR NC_012039.1; contig end 1525460..1525460 Campylobacter lari RM2100 306263000002 SEQ_END SEQ_END NC_012040.1 46201 46201 DR NC_012040.1; contig end 46201..46201 Campylobacter lari RM2100 YP_002574620.1 CDS dnaA NC_012039.1 1 1329 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 1..1329 Campylobacter lari RM2100 7411143 YP_002574621.1 CDS dnaN NC_012039.1 1462 2529 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1462..2529 Campylobacter lari RM2100 7410563 YP_002574622.1 CDS gyrB NC_012039.1 2539 4857 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 2539..4857 Campylobacter lari RM2100 7410564 YP_002574623.1 CDS Cla_0004 NC_012039.1 4866 5858 D Pfam match to PF00962.13 A_deaminase; adenosine deaminase 4866..5858 Campylobacter lari RM2100 7410565 YP_002574624.1 CDS Cla_0005 NC_012039.1 5855 6856 D Pfam match to PF04373.4 DUF511; hypothetical protein 5855..6856 Campylobacter lari RM2100 7410566 YP_002574625.1 CDS Cla_0006 NC_012039.1 6832 7215 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 6832..7215 Campylobacter lari RM2100 7410567 YP_002574626.1 CDS Cla_0007 NC_012039.1 7387 8637 D Pfam matches to PF00174.10 Oxidored_molyb, and to PF03404.7 Mo-co_dimer; molybdopterin oxidoreductase 7387..8637 Campylobacter lari RM2100 7410568 YP_002574627.1 CDS Cla_0008 NC_012039.1 8640 8975 D hypothetical protein 8640..8975 Campylobacter lari RM2100 7410569 YP_002574628.1 CDS Cla_0009 NC_012039.1 9018 9662 D hypothetical protein 9018..9662 Campylobacter lari RM2100 7410570 YP_002574629.1 CDS Cla_0010 NC_012039.1 9672 9881 D Pfam match to PF03831.5 PhnA; PhnA family 9672..9881 Campylobacter lari RM2100 7410571 YP_002574630.1 CDS thyX NC_012039.1 9895 10527 R flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase complement(9895..10527) Campylobacter lari RM2100 7410572 YP_002574631.1 CDS pyrG NC_012039.1 10627 12264 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 10627..12264 Campylobacter lari RM2100 7410573 YP_002574632.1 CDS recJ NC_012039.1 12254 13825 D Pfam matches to PF01368.11 DHH, and to PF02272.10 DHHA1; single-stranded-DNA specific exonuclease 12254..13825 Campylobacter lari RM2100 7410574 YP_002574633.1 CDS Cla_0014 NC_012039.1 13894 14472 D Pfam match to PF01464.11 SLT; SLT family 13894..14472 Campylobacter lari RM2100 7410575 YP_002574634.1 CDS prfA NC_012039.1 14482 15549 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(14482..15549) Campylobacter lari RM2100 7410576 YP_002574635.1 CDS rpsT NC_012039.1 15553 15816 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(15553..15816) Campylobacter lari RM2100 7410577 YP_002574636.1 CDS Cla_0017 NC_012039.1 16105 16866 R Pfam matches to PF01479.16 S4, and to PF00849.13 PseudoU_synth_2; ribosomal pseudouridine synthase complement(16105..16866) Campylobacter lari RM2100 7410578 YP_002574637.1 CDS Cla_0018 NC_012039.1 16876 18834 R Pfam matches to PF00753.18 Lactamase_B, and to PF07521.3 RMMBL; metallo-beta-lactamase complement(16876..18834) Campylobacter lari RM2100 7410579 YP_002574638.1 CDS ksgA NC_012039.1 18800 19621 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(18800..19621) Campylobacter lari RM2100 7410580 YP_002574639.1 CDS Cla_0020 NC_012039.1 19712 20245 D purine nucleoside phosphorylase 19712..20245 Campylobacter lari RM2100 7410581 YP_002574640.1 CDS Cla_0021 NC_012039.1 20254 21324 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 20254..21324 Campylobacter lari RM2100 7410582 YP_002574641.1 CDS Cla_0022 NC_012039.1 21421 22431 D Pfam match to PF04055.12 Radical_SAM; hypothetical protein 21421..22431 Campylobacter lari RM2100 7410583 YP_002574642.1 CDS Cla_0023 NC_012039.1 22428 23330 R Pfam match to PF00849.13 PseudoU_synth_2; ribosomal pseudouridine synthase complement(22428..23330) Campylobacter lari RM2100 7410584 YP_002574643.1 CDS purB1 NC_012039.1 23410 24738 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 23410..24738 Campylobacter lari RM2100 7410585 YP_002574644.1 CDS nrdA NC_012039.1 24752 27127 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 24752..27127 Campylobacter lari RM2100 7410586 YP_002574645.1 CDS Cla_0026 NC_012039.1 27143 29128 D Pfam match to PF03169.6 OPT; hypothetical protein 27143..29128 Campylobacter lari RM2100 7410587 YP_002574646.1 CDS Cla_0027 NC_012039.1 29125 29931 D Pfam match to PF02673.9 BacA; undecaprenol kinase 29125..29931 Campylobacter lari RM2100 7410588 YP_002574647.1 CDS thrS NC_012039.1 30038 31849 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 30038..31849 Campylobacter lari RM2100 7410589 YP_002574648.1 CDS infC NC_012039.1 31846 32367 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 31846..32367 Campylobacter lari RM2100 7410590 YP_002574649.1 CDS Cla_0030 NC_012039.1 32401 33492 D Pfam match to PF02086.6 MethyltransfD12; D12-class N6-adenine-specific DNA methyltransferase 32401..33492 Campylobacter lari RM2100 7410591 YP_002574650.1 CDS Cla_0031 NC_012039.1 33489 34355 R Pfam match to PF08279.3 HTH_11; transcriptional regulator complement(33489..34355) Campylobacter lari RM2100 7410592 YP_002574651.1 CDS Cla_0032 NC_012039.1 34434 35858 R von Willebrand factor A complement(34434..35858) Campylobacter lari RM2100 7410593 YP_002574652.1 CDS Cla_0033 NC_012039.1 35890 37572 R Pfam matches to PF07728.5 AAA_5, and to PF03382.5 DUF285; MoxR/RavA-like ATPase complement(35890..37572) Campylobacter lari RM2100 7410594 YP_002574653.1 CDS rpmI NC_012039.1 37745 37936 D Pfam match to PF01632.10 Ribosomal_L35p; 50S ribosomal protein L35 37745..37936 Campylobacter lari RM2100 7410595 YP_002574654.1 CDS rplT NC_012039.1 38034 38387 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 38034..38387 Campylobacter lari RM2100 7410596 YP_002574655.1 CDS Cla_0036 NC_012039.1 38335 39273 D catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 38335..39273 Campylobacter lari RM2100 7410597 YP_002574656.1 CDS Cla_0037 NC_012039.1 39283 40092 R Pfam match to PF00950.8 ABC-3; cation ABC transporter permease complement(39283..40092) Campylobacter lari RM2100 7410598 YP_002574657.1 CDS Cla_0038 NC_012039.1 40085 40834 R Pfam match to PF00005.18 ABC_tran; cation ABC transporter, ATP-binding protein complement(40085..40834) Campylobacter lari RM2100 7410599 YP_002574658.1 CDS Cla_0039 NC_012039.1 40831 41667 R Pfam match to PF01297.8 SBP_bac_9; cation ABC transporter, periplasmic cation-binding protein complement(40831..41667) Campylobacter lari RM2100 7410600 YP_002574659.1 CDS Cla_0040 NC_012039.1 41728 42426 D hypothetical protein 41728..42426 Campylobacter lari RM2100 7410601 YP_002574660.1 CDS pyrC1 NC_012039.1 42436 43428 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(42436..43428) Campylobacter lari RM2100 7410602 YP_002574661.1 CDS Cla_0042 NC_012039.1 43437 43667 R hypothetical protein complement(43437..43667) Campylobacter lari RM2100 7410603 YP_002574662.1 CDS dgkA NC_012039.1 43652 44023 R Pfam match to PF01219.10 DAGK_prokar; diacylglycerol kinase complement(43652..44023) Campylobacter lari RM2100 7410604 YP_002574663.1 CDS Cla_0044 NC_012039.1 44023 45555 R Pfam matches to PF08019.3 DUF1705, and to PF00884.14 Sulfatase; sulfatase complement(44023..45555) Campylobacter lari RM2100 7410605 YP_002574664.1 CDS xth NC_012039.1 45654 46412 D Pfam match to PF03372.14 Exo_endo_phos; exodeoxyribonuclease III 45654..46412 Campylobacter lari RM2100 7410606 YP_002574665.1 CDS Cla_0047 NC_012039.1 46766 47380 D Pfam match to PF03382.5 DUF285; hypothetical protein 46766..47380 Campylobacter lari RM2100 7410608 YP_002574666.1 CDS nrdD NC_012039.1 47512 49791 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 47512..49791 Campylobacter lari RM2100 7410609 YP_002574667.1 CDS nrdG NC_012039.1 49739 50272 D anaerobic ribonucleoside triphosphate reductase activating protein 49739..50272 Campylobacter lari RM2100 7410610 YP_002574668.1 CDS sodB NC_012039.1 50340 50993 D Pfam matches to PF00081.13 Sod_Fe_N, and to PF02777.9 Sod_Fe_C; superoxide dismutase (Fe) 50340..50993 Campylobacter lari RM2100 7410611 YP_002574669.1 CDS Cla_0051 NC_012039.1 51053 52426 D Pfam match to PF03606.6 DcuC; C4-dicarboxylate transporter 51053..52426 Campylobacter lari RM2100 7410612 YP_002574670.1 CDS purM NC_012039.1 52449 53438 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(52449..53438) Campylobacter lari RM2100 7410613 YP_002574671.1 CDS coaE NC_012039.1 53497 54078 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 53497..54078 Campylobacter lari RM2100 7410614 YP_002574672.1 CDS dapF NC_012039.1 54089 54838 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 54089..54838 Campylobacter lari RM2100 7410615 YP_002574673.1 CDS Cla_0055 NC_012039.1 54813 55520 D mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain protein 54813..55520 Campylobacter lari RM2100 7410616 YP_002574674.1 CDS Cla_0056 NC_012039.1 55517 56578 R hypothetical protein complement(55517..56578) Campylobacter lari RM2100 7410617 YP_002574675.1 CDS rpsJ NC_012039.1 56900 57211 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 56900..57211 Campylobacter lari RM2100 7410619 YP_002574676.1 CDS rplC NC_012039.1 57221 57796 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 57221..57796 Campylobacter lari RM2100 7410620 YP_002574677.1 CDS rplD NC_012039.1 57793 58407 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 57793..58407 Campylobacter lari RM2100 7410621 YP_002574678.1 CDS rplW NC_012039.1 58409 58690 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 58409..58690 Campylobacter lari RM2100 7410622 YP_002574679.1 CDS rplB NC_012039.1 58692 59522 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 58692..59522 Campylobacter lari RM2100 7410623 YP_002574680.1 CDS rpsS NC_012039.1 59524 59805 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 59524..59805 Campylobacter lari RM2100 7410624 YP_002574681.1 CDS rplV NC_012039.1 59817 60191 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 59817..60191 Campylobacter lari RM2100 7410625 YP_002574682.1 CDS rpsC NC_012039.1 60193 60894 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 60193..60894 Campylobacter lari RM2100 7410626 YP_002574683.1 CDS rplP NC_012039.1 60897 61322 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 60897..61322 Campylobacter lari RM2100 7410627 YP_002574684.1 CDS rpmC NC_012039.1 61309 61494 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 61309..61494 Campylobacter lari RM2100 7410628 YP_002574685.1 CDS rpsQ NC_012039.1 61504 61755 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 61504..61755 Campylobacter lari RM2100 7410629 YP_002574686.1 CDS rplN NC_012039.1 61755 62123 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 61755..62123 Campylobacter lari RM2100 7410630 YP_002574687.1 CDS rplX NC_012039.1 62123 62350 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 62123..62350 Campylobacter lari RM2100 7410631 YP_002574688.1 CDS rplE NC_012039.1 62352 62897 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 62352..62897 Campylobacter lari RM2100 7410632 YP_002574689.1 CDS rpsN NC_012039.1 62899 63084 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 62899..63084 Campylobacter lari RM2100 7410633 YP_002574690.1 CDS rpsH NC_012039.1 63097 63492 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 63097..63492 Campylobacter lari RM2100 7410634 YP_002574691.1 CDS rplF NC_012039.1 63569 64105 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 63569..64105 Campylobacter lari RM2100 7410635 YP_002574692.1 CDS rplR NC_012039.1 64116 64472 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 64116..64472 Campylobacter lari RM2100 7410636 YP_002574693.1 CDS rpsE NC_012039.1 64456 64932 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 64456..64932 Campylobacter lari RM2100 7410637 YP_002574694.1 CDS rplO NC_012039.1 64936 65328 D late assembly protein; 50S ribosomal protein L15 64936..65328 Campylobacter lari RM2100 7411309 YP_002574695.1 CDS secY NC_012039.1 65328 66590 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 65328..66590 Campylobacter lari RM2100 7411310 YP_002574696.1 CDS murI NC_012039.1 66631 67371 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 66631..67371 Campylobacter lari RM2100 7411311 YP_002574697.1 CDS ansA NC_012039.1 67472 68518 D Pfam match to PF00710.11 Asparaginase; L-asparaginase 67472..68518 Campylobacter lari RM2100 7411312 YP_002574698.1 CDS rbr NC_012039.1 68602 69249 D Pfam matches to PF06397.3 Desulfoferrod_N, and to PF02915.8 Rubrerythrin; rubrerythrin 68602..69249 Campylobacter lari RM2100 7411313 YP_002574699.1 CDS Cla_0082 NC_012039.1 69304 69777 D hypothetical protein 69304..69777 Campylobacter lari RM2100 7411314 YP_002574700.1 CDS rnhB NC_012039.1 69777 70328 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 69777..70328 Campylobacter lari RM2100 7411315 YP_002574701.1 CDS sdaC NC_012039.1 70708 72030 D L-serine transporter 70708..72030 Campylobacter lari RM2100 7411316 YP_002574702.1 CDS sdaA NC_012039.1 72042 73409 D Pfam matches to PF03315.6 SDH_beta, and to PF03313.6 SDH_alpha; L-serine dehydratase 72042..73409 Campylobacter lari RM2100 7411317 YP_002574703.1 CDS map NC_012039.1 73499 74254 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 73499..74254 Campylobacter lari RM2100 7411318 YP_002574704.1 CDS Cla_0087 NC_012039.1 74271 76073 R Pfam match to PF00015.12 MCPsignal; MCP-domain signal transduction protein complement(74271..76073) Campylobacter lari RM2100 7411319 YP_002574705.1 CDS Cla_0088 NC_012039.1 76057 76977 R Pfam match to PF03150.5 CCP_MauG; cytochrome c551 peroxidase complement(76057..76977) Campylobacter lari RM2100 7411320 YP_002574706.1 CDS Cla_0089 NC_012039.1 77034 78323 R Pfam match to PF07690.7 MFS_1; MFS transporter complement(77034..78323) Campylobacter lari RM2100 7411321 YP_002574707.1 CDS infA NC_012039.1 78457 78675 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 78457..78675 Campylobacter lari RM2100 7411322 YP_002574708.1 CDS rpmJ NC_012039.1 78851 78964 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 78851..78964 Campylobacter lari RM2100 7411323 YP_002574709.1 CDS rpsM NC_012039.1 78968 79333 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 78968..79333 Campylobacter lari RM2100 7411324 YP_002574710.1 CDS rpsK NC_012039.1 79343 79735 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 79343..79735 Campylobacter lari RM2100 7411325 YP_002574711.1 CDS rpsD NC_012039.1 79766 80392 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 79766..80392 Campylobacter lari RM2100 7411326 YP_002574712.1 CDS rpoA NC_012039.1 80407 81420 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 80407..81420 Campylobacter lari RM2100 7411327 YP_002574713.1 CDS rplQ NC_012039.1 81424 81777 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 81424..81777 Campylobacter lari RM2100 7411328 YP_002574714.1 CDS hisG NC_012039.1 81888 82787 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 81888..82787 Campylobacter lari RM2100 7411329 YP_002574715.1 CDS hisD NC_012039.1 82797 84077 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 82797..84077 Campylobacter lari RM2100 7411330 YP_002574716.1 CDS hisB NC_012039.1 84074 85141 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 84074..85141 Campylobacter lari RM2100 7411331 YP_002574717.1 CDS Cla_0100 NC_012039.1 85175 85906 D hypothetical protein 85175..85906 Campylobacter lari RM2100 7411332 YP_002574718.1 CDS hisH NC_012039.1 85928 86509 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 85928..86509 Campylobacter lari RM2100 7411333 YP_002574719.1 CDS hisA NC_012039.1 86516 87250 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 86516..87250 Campylobacter lari RM2100 7411334 YP_002574720.1 CDS hisF1 NC_012039.1 87232 87999 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 87232..87999 Campylobacter lari RM2100 7411335 YP_002574721.1 CDS hisIE NC_012039.1 88011 88637 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 88011..88637 Campylobacter lari RM2100 7411336 YP_002574722.1 CDS Cla_0105 NC_012039.1 88760 89905 D Pfam match to PF00015.12 MCPsignal; MCP-domain signal transduction protein 88760..89905 Campylobacter lari RM2100 7411337 YP_002574723.1 CDS Cla_0106 NC_012039.1 90135 90857 D hypothetical protein 90135..90857 Campylobacter lari RM2100 7411338 YP_002574724.1 CDS flgE NC_012039.1 90993 93437 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 90993..93437 Campylobacter lari RM2100 7411339 YP_002574725.1 CDS Cla_0108 NC_012039.1 93605 94186 R hypothetical protein complement(93605..94186) Campylobacter lari RM2100 7411340 YP_002574726.1 CDS Cla_0109 NC_012039.1 94315 95556 R Pfam match to PF07690.7 MFS_1; drug resistance transporter, Bcr/CflA family complement(94315..95556) Campylobacter lari RM2100 7411341 YP_002574727.1 CDS Cla_0110 NC_012039.1 95674 95949 D Pfam match to PF01106.8 NifU; NifU family protein 95674..95949 Campylobacter lari RM2100 7411342 YP_002574728.1 CDS Cla_0111 NC_012039.1 95936 96475 D hypothetical protein 95936..96475 Campylobacter lari RM2100 7411343 YP_002574729.1 CDS murE NC_012039.1 96459 97742 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 96459..97742 Campylobacter lari RM2100 7411344 YP_002574730.1 CDS Cla_0113 NC_012039.1 97743 98048 D Pfam match to PF02575.7 DUF149; hypothetical protein 97743..98048 Campylobacter lari RM2100 7411345 YP_002574731.1 CDS Cla_0114 NC_012039.1 98045 99124 D hypothetical protein 98045..99124 Campylobacter lari RM2100 7411346 YP_002574732.1 CDS ispA NC_012039.1 99121 99969 D Pfam match to PF00348.8 polyprenyl_synt; geranyltranstransferase 99121..99969 Campylobacter lari RM2100 7411347 YP_002574733.1 CDS tkt NC_012039.1 99973 101877 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 99973..101877 Campylobacter lari RM2100 7411348 YP_002574734.1 CDS iamB NC_012039.1 101867 102979 D Pfam match to PF02405.7 DUF140; ABC transporter permease 101867..102979 Campylobacter lari RM2100 7411349 YP_002574735.1 CDS iamA NC_012039.1 102976 103698 D Pfam match to PF00005.18 ABC_tran; ABC transporter ATP-binding protein 102976..103698 Campylobacter lari RM2100 7411350 YP_002574736.1 CDS Cla_0119 NC_012039.1 103698 104525 D Pfam match to PF02470.11 MCE; ABC transporter substrate-binding protein 103698..104525 Campylobacter lari RM2100 7411351 YP_002574737.1 CDS Cla_0120 NC_012039.1 104527 105120 D hypothetical protein 104527..105120 Campylobacter lari RM2100 7411352 YP_002574738.1 CDS Cla_0121 NC_012039.1 105164 105685 D hypothetical protein 105164..105685 Campylobacter lari RM2100 7411353 YP_002574739.1 CDS sodC NC_012039.1 105717 106256 R Pfam match to PF00080.11 Sod_Cu; superoxide dismutase (Cu/Zn) complement(105717..106256) Campylobacter lari RM2100 7411354 YP_002574740.1 CDS Cla_0123 NC_012039.1 106359 107237 D Pfam match to PF00165.14 HTH_AraC; AraC family transcriptional regulator 106359..107237 Campylobacter lari RM2100 7411355 YP_002574741.1 CDS Cla_0124 NC_012039.1 107303 108139 D ATP/GTP-binding protein 107303..108139 Campylobacter lari RM2100 7411356 YP_002574742.1 CDS Cla_0125 NC_012039.1 108160 108417 R hypothetical protein complement(108160..108417) Campylobacter lari RM2100 7411357 YP_002574743.1 CDS ung NC_012039.1 108467 109156 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(108467..109156) Campylobacter lari RM2100 7411358 YP_002574744.1 CDS Cla_0127 NC_012039.1 109165 110472 R Pfam match to PF02518.17 HATPase_c; two-component sensor histidine kinase complement(109165..110472) Campylobacter lari RM2100 7411359 YP_002574745.1 CDS Cla_0128 NC_012039.1 110462 111148 R Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C; two-component response regulator complement(110462..111148) Campylobacter lari RM2100 7411360 YP_002574746.1 CDS Cla_0129 NC_012039.1 111150 111566 R Pfam match to PF06518.2 DUF1104; hypothetical protein complement(111150..111566) Campylobacter lari RM2100 7411361 YP_002574747.1 CDS Cla_0130 NC_012039.1 111629 112381 R hypothetical protein complement(111629..112381) Campylobacter lari RM2100 7411362 YP_002574748.1 CDS mutY NC_012039.1 112471 113499 D Pfam match to PF00730.16 HhH-GPD; A/G-specific adenine glycosylase 112471..113499 Campylobacter lari RM2100 7411363 YP_002574749.1 CDS Cla_0132 NC_012039.1 113489 114346 D Pfam match to PF04055.12 Radical_SAM; radical SAM domain protein 113489..114346 Campylobacter lari RM2100 7411364 YP_002574750.1 CDS Cla_0133 NC_012039.1 114330 115199 R hypothetical protein complement(114330..115199) Campylobacter lari RM2100 7411365 YP_002574751.1 CDS Cla_0135 NC_012039.1 115452 116102 R hypothetical protein complement(115452..116102) Campylobacter lari RM2100 7411367 YP_002574752.1 CDS ktrA NC_012039.1 116296 116937 R Pfam match to PF02254.9 TrkA_N; TRK system potassium uptake protein TrkA complement(116296..116937) Campylobacter lari RM2100 7411369 YP_002574753.1 CDS ktrB NC_012039.1 116934 118277 R Pfam match to PF02386.7 TrkH; TRK system potassium uptake protein TrkB complement(116934..118277) Campylobacter lari RM2100 7411370 YP_002574754.1 CDS Cla_0139 NC_012039.1 118366 119700 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(118366..119700) Campylobacter lari RM2100 7411371 YP_002574755.1 CDS aspA NC_012039.1 119720 121132 R Pfam match to PF00206.11 Lyase_1; aspartate ammonia-lyase complement(119720..121132) Campylobacter lari RM2100 7411372 YP_002574756.1 CDS Cla_0141 NC_012039.1 121524 123500 R Pfam match to PF00015.12 MCPsignal; MCP-domain signal transduction protein complement(121524..123500) Campylobacter lari RM2100 7411373 YP_002574757.1 CDS Cla_0143 NC_012039.1 125710 126831 R hypothetical protein complement(125710..126831) Campylobacter lari RM2100 7411375 YP_002574758.1 CDS Cla_0144 NC_012039.1 126844 127107 R hypothetical protein complement(126844..127107) Campylobacter lari RM2100 7411376 YP_002574759.1 CDS moaC NC_012039.1 127085 127558 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC complement(127085..127558) Campylobacter lari RM2100 7411377 YP_002574760.1 CDS Cla_0146 NC_012039.1 127646 127807 D hypothetical protein 127646..127807 Campylobacter lari RM2100 7411378 YP_002574761.1 CDS Cla_0147 NC_012039.1 127810 129120 D Pfam match to PF07690.7 MFS_1; transporter, major facilitator superfamily 127810..129120 Campylobacter lari RM2100 7411379 YP_002574762.1 CDS Cla_0148 NC_012039.1 129089 129565 R hypothetical protein complement(129089..129565) Campylobacter lari RM2100 7411380 YP_002574763.1 CDS Cla_0149 NC_012039.1 129674 130057 D hypothetical protein 129674..130057 Campylobacter lari RM2100 7411381 YP_002574764.1 CDS Cla_0150 NC_012039.1 130072 130755 R hypothetical protein complement(130072..130755) Campylobacter lari RM2100 7411382 YP_002574765.1 CDS Cla_0151 NC_012039.1 130745 131026 R hypothetical protein complement(130745..131026) Campylobacter lari RM2100 7411383 YP_002574766.1 CDS eno NC_012039.1 131023 132267 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(131023..132267) Campylobacter lari RM2100 7411384 YP_002574767.1 CDS recA NC_012039.1 132267 133301 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(132267..133301) Campylobacter lari RM2100 7411385 YP_002574768.1 CDS Cla_0154 NC_012039.1 133412 134275 D Pfam match to PF02642.5 DUF191; hypothetical protein 133412..134275 Campylobacter lari RM2100 7411386 YP_002574769.1 CDS fliQ NC_012039.1 134302 134568 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 134302..134568 Campylobacter lari RM2100 7411387 YP_002574770.1 CDS murB NC_012039.1 134565 135341 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 134565..135341 Campylobacter lari RM2100 7411388 YP_002574771.1 CDS Cla_0157 NC_012039.1 135334 135984 R hypothetical protein complement(135334..135984) Campylobacter lari RM2100 7411389 YP_002574772.1 CDS cysQ NC_012039.1 135984 136679 R Pfam match to PF00459.16 Inositol_P; 3'(2'),5'-bisphosphate nucleotidase complement(135984..136679) Campylobacter lari RM2100 7411390 YP_002574773.1 CDS Cla_0159 NC_012039.1 136782 137960 R Pfam match to PF00999.12 Na_H_Exchanger; Na+/H+ antiporter complement(136782..137960) Campylobacter lari RM2100 7411391 YP_002574774.1 CDS bioB NC_012039.1 137941 138777 R catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase complement(137941..138777) Campylobacter lari RM2100 7411392 YP_002574775.1 CDS topA NC_012039.1 138777 140864 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(138777..140864) Campylobacter lari RM2100 7410884 YP_002574776.1 CDS maf2 NC_012039.1 140995 142707 D Pfam match to PF01973.9 DUF115; motility accessory factor 140995..142707 Campylobacter lari RM2100 7410885 YP_002574777.1 CDS flaA NC_012039.1 142783 144492 D FlaB; structural flagella protein; in Helicobacter the flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin 142783..144492 Campylobacter lari RM2100 7410886 YP_002574778.1 CDS flaB NC_012039.1 144598 146307 D FlaA; structural flagella protein; in Helicobacter the flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin 144598..146307 Campylobacter lari RM2100 7410887 YP_002574779.1 CDS maf3 NC_012039.1 146335 148212 R Pfam match to PF01973.9 DUF115; motility accessory factor complement(146335..148212) Campylobacter lari RM2100 7410888 YP_002574780.1 CDS maf4 NC_012039.1 148222 150075 R Pfam match to PF01973.9 DUF115; motility accessory factor complement(148222..150075) Campylobacter lari RM2100 7410889 YP_002574781.1 CDS maf5 NC_012039.1 150068 151804 R Pfam match to PF01973.9 DUF115; motility accessory factor complement(150068..151804) Campylobacter lari RM2100 7410890 YP_002574782.1 CDS maf6 NC_012039.1 151821 153737 R Pfam match to PF01973.9 DUF115; motility accessory factor complement(151821..153737) Campylobacter lari RM2100 7410891 YP_002574783.1 CDS pseI NC_012039.1 153741 154775 R Pfam matches to PF03102.5 NeuB, and to PF08666.3 SAF; N-acetylneuraminic acid synthase complement(153741..154775) Campylobacter lari RM2100 7410892 YP_002574784.1 CDS Cla_0170 NC_012039.1 154886 155308 D hypothetical protein 154886..155308 Campylobacter lari RM2100 7410893 YP_002574785.1 CDS fliN NC_012039.1 155305 155601 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 155305..155601 Campylobacter lari RM2100 7410894 YP_002574786.1 CDS Cla_0172 NC_012039.1 155598 156356 D hypothetical protein 155598..156356 Campylobacter lari RM2100 7410895 YP_002574787.1 CDS Cla_0173 NC_012039.1 156353 157849 R Pfam match to PF02541.7 Ppx-GppA; phosphatase, Ppx/GppA family complement(156353..157849) Campylobacter lari RM2100 7410896 YP_002574788.1 CDS fdxB NC_012039.1 157849 158094 R Pfam match to PF00037.18 Fer4; ferredoxin complement(157849..158094) Campylobacter lari RM2100 7410897 YP_002574789.1 CDS Cla_0175 NC_012039.1 158209 158883 R Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C; two-component response regulator complement(158209..158883) Campylobacter lari RM2100 7410898 YP_002574790.1 CDS folB NC_012039.1 158961 159278 R dihydroneopterin aldolase complement(158961..159278) Campylobacter lari RM2100 7410899 YP_002574791.1 CDS Cla_0177 NC_012039.1 159263 159874 R Pfam match to PF02660.6 DUF205; hypothetical protein complement(159263..159874) Campylobacter lari RM2100 7410900 YP_002574792.1 CDS Cla_0178 NC_012039.1 160075 161109 D Pfam match to PF03150.5 CCP_MauG; cytochrome c551 peroxidase 160075..161109 Campylobacter lari RM2100 7410901 YP_002574793.1 CDS Cla_0179 NC_012039.1 161202 162548 D hypothetical protein 161202..162548 Campylobacter lari RM2100 7410902 YP_002574794.1 CDS Cla_0180 NC_012039.1 162566 163195 D hypothetical protein 162566..163195 Campylobacter lari RM2100 7410903 YP_002574795.1 CDS Cla_0181 NC_012039.1 163220 164563 D hypothetical protein 163220..164563 Campylobacter lari RM2100 7410904 YP_002574796.1 CDS Cla_0182 NC_012039.1 164573 165730 D hypothetical protein 164573..165730 Campylobacter lari RM2100 7410905 YP_002574797.1 CDS rplU NC_012039.1 165855 166163 D Pfam match to PF00829.12 Ribosomal_L21p; 50S ribosomal protein L21 165855..166163 Campylobacter lari RM2100 7410906 YP_002574798.1 CDS rpmA NC_012039.1 166174 166428 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 166174..166428 Campylobacter lari RM2100 7410907 YP_002574799.1 CDS obgE NC_012039.1 166524 167567 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 166524..167567 Campylobacter lari RM2100 7410908 YP_002574800.1 CDS fmt NC_012039.1 167710 168621 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 167710..168621 Campylobacter lari RM2100 7410909 YP_002574801.1 CDS birA NC_012039.1 168602 169237 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 168602..169237 Campylobacter lari RM2100 7410910 YP_002574802.1 CDS parA NC_012039.1 169234 170016 D Pfam match to PF01656.14 CbiA; chromosome partitioning protein ParA 169234..170016 Campylobacter lari RM2100 7410911 YP_002574803.1 CDS parB NC_012039.1 170020 170871 D Pfam match to PF02195.9 ParBc; chromosome partitioning protein ParB 170020..170871 Campylobacter lari RM2100 7410912 YP_002574804.1 CDS atpF' NC_012039.1 170935 171360 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; ATP synthase F0F1 subunit B' 170935..171360 Campylobacter lari RM2100 7410913 YP_002574805.1 CDS atpF NC_012039.1 171370 171882 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 171370..171882 Campylobacter lari RM2100 7410914 YP_002574806.1 CDS atpH NC_012039.1 171882 172403 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 171882..172403 Campylobacter lari RM2100 7410915 YP_002574807.1 CDS atpA NC_012039.1 172413 173918 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 172413..173918 Campylobacter lari RM2100 7410916 YP_002574808.1 CDS atpG NC_012039.1 173928 174812 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 173928..174812 Campylobacter lari RM2100 7410917 YP_002574809.1 CDS atpD NC_012039.1 174827 176281 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 174827..176281 Campylobacter lari RM2100 7410918 YP_002574810.1 CDS atpC NC_012039.1 176285 176677 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 176285..176677 Campylobacter lari RM2100 7410919 YP_002574811.1 CDS exbB1 NC_012039.1 176677 177237 D Pfam match to PF01618.7 MotA_ExbB; TonB system transport protein ExbB 176677..177237 Campylobacter lari RM2100 7410920 YP_002574812.1 CDS exbD1 NC_012039.1 177241 177627 D Pfam match to PF02472.7 ExbD; TonB system transport protein ExbD 177241..177627 Campylobacter lari RM2100 7410921 YP_002574813.1 CDS tonB1 NC_012039.1 177631 178410 D TonB domain protein 177631..178410 Campylobacter lari RM2100 7410922 YP_002574814.1 CDS tolB NC_012039.1 178407 179606 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 178407..179606 Campylobacter lari RM2100 7410923 YP_002574815.1 CDS pal NC_012039.1 179675 180160 D Pfam match to PF00691.11 OmpA; peptidoglycan-associated lipoprotein precursor 179675..180160 Campylobacter lari RM2100 7410924 YP_002574816.1 CDS Cla_0202 NC_012039.1 180172 181161 D hypothetical protein 180172..181161 Campylobacter lari RM2100 7410925 YP_002574817.1 CDS slyD NC_012039.1 181175 181759 D Pfam match to PF00254.19 FKBP_C; FKBP-type peptidylprolyl isomerase 181175..181759 Campylobacter lari RM2100 7410926 YP_002574818.1 CDS fabD NC_012039.1 181759 182679 D malonyl CoA-ACP transacylase 181759..182679 Campylobacter lari RM2100 7410927 YP_002574819.1 CDS pfs NC_012039.1 182676 183362 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 182676..183362 Campylobacter lari RM2100 7410928 YP_002574820.1 CDS Cla_0206 NC_012039.1 183359 184120 D Pfam match to PF01171.11 ATP_bind_3; ATPase (PP-loop superfamily) 183359..184120 Campylobacter lari RM2100 7410929 YP_002574821.1 CDS Cla_0207 NC_012039.1 184113 184625 D amidase 184113..184625 Campylobacter lari RM2100 7410930 YP_002574822.1 CDS Cla_0208 NC_012039.1 184627 185241 D recombination protein RecO 184627..185241 Campylobacter lari RM2100 7410931 YP_002574823.1 CDS Cla_0209 NC_012039.1 185225 185545 R hypothetical protein complement(185225..185545) Campylobacter lari RM2100 7410932 YP_002574824.1 CDS dusB NC_012039.1 185607 186533 R Pfam match to PF01207.8 Dus; tRNA-dihydrouridine synthase B complement(185607..186533) Campylobacter lari RM2100 7410933 YP_002574825.1 CDS Cla_0211 NC_012039.1 186530 187513 R hypothetical protein complement(186530..187513) Campylobacter lari RM2100 7410934 YP_002574826.1 CDS Cla_0212 NC_012039.1 187510 187866 R Pfam match to PF01258.8 zf-dskA_traR; DksA-like protein complement(187510..187866) Campylobacter lari RM2100 7410935 YP_002574827.1 CDS Cla_0213 NC_012039.1 187875 188330 R Pfam match to PF02590.8 DUF163; hypothetical protein complement(187875..188330) Campylobacter lari RM2100 7410936 YP_002574828.1 CDS accD NC_012039.1 188333 189175 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(188333..189175) Campylobacter lari RM2100 7410937 YP_002574829.1 CDS Cla_0215 NC_012039.1 189226 191442 R Pfam matches to PF07244.6 Surf_Ag_VNR, and to PF07244.6 Surf_Ag_VNR; hypothetical protein complement(189226..191442) Campylobacter lari RM2100 7410938 YP_002574830.1 CDS tyrA NC_012039.1 191521 192348 D catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 191521..192348 Campylobacter lari RM2100 7410939 YP_002574831.1 CDS Cla_0217 NC_012039.1 192421 193800 D Pfam match to PF01551.13 Peptidase_M23; peptidase, M23/M37 family 192421..193800 Campylobacter lari RM2100 7410940 YP_002574832.1 CDS lpxC NC_012039.1 193803 194687 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 193803..194687 Campylobacter lari RM2100 7410941 YP_002574833.1 CDS Cla_0219 NC_012039.1 194699 195136 D hypothetical protein 194699..195136 Campylobacter lari RM2100 7410942 YP_002574834.1 CDS thrB NC_012039.1 195145 196023 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 195145..196023 Campylobacter lari RM2100 7410943 YP_002574835.1 CDS Cla_0221 NC_012039.1 196048 196314 D hypothetical protein 196048..196314 Campylobacter lari RM2100 7410944 YP_002574836.1 CDS infB NC_012039.1 196295 198928 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 196295..198928 Campylobacter lari RM2100 7410945 YP_002574837.1 CDS rbfA NC_012039.1 198925 199287 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 198925..199287 Campylobacter lari RM2100 7410946 YP_002574838.1 CDS Cla_0224 NC_012039.1 199277 199699 D Pfam match to PF02576.8 DUF150; hypothetical protein 199277..199699 Campylobacter lari RM2100 7410947 YP_002574839.1 CDS Cla_0225 NC_012039.1 199821 200447 D endonuclease 199821..200447 Campylobacter lari RM2100 7410948 YP_002574840.1 CDS Cla_0226 NC_012039.1 200377 201036 R hypothetical protein complement(200377..201036) Campylobacter lari RM2100 7410949 YP_002574841.1 CDS ribD NC_012039.1 201140 202132 D Pfam match to PF00383.13 dCMP_cyt_deam_1; riboflavin biosynthesis protein 201140..202132 Campylobacter lari RM2100 7410950 YP_002574842.1 CDS pspA NC_012039.1 202129 203022 R Pfam match to PF01343.9 Peptidase_S49; endopeptidase IV complement(202129..203022) Campylobacter lari RM2100 7410951 YP_002574843.1 CDS Cla_0229 NC_012039.1 203010 204233 R Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; chlorohydrolase complement(203010..204233) Campylobacter lari RM2100 7410952 YP_002574844.1 CDS aroQ NC_012039.1 204322 204804 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 204322..204804 Campylobacter lari RM2100 7410953 YP_002574845.1 CDS pepQ NC_012039.1 204801 205826 D Pfam match to PF00557.15 Peptidase_M24; prolidase (Xaa-Pro dipeptidase) 204801..205826 Campylobacter lari RM2100 7410954 YP_002574846.1 CDS folK NC_012039.1 205828 206301 D Pfam match to PF01288.11 HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 205828..206301 Campylobacter lari RM2100 7410955 YP_002574847.1 CDS flhF NC_012039.1 206310 207695 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 206310..207695 Campylobacter lari RM2100 7410956 YP_002574848.1 CDS Cla_0234 NC_012039.1 207688 208551 D Pfam match to PF01656.14 CbiA; chromosome partitioning protein ParA 207688..208551 Campylobacter lari RM2100 7410957 YP_002574849.1 CDS Cla_0235 NC_012039.1 208567 208926 D hypothetical protein 208567..208926 Campylobacter lari RM2100 7410958 YP_002574850.1 CDS fliA NC_012039.1 208913 209599 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 208913..209599 Campylobacter lari RM2100 7410959 YP_002574851.1 CDS fliM NC_012039.1 209600 210691 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 209600..210691 Campylobacter lari RM2100 7410960 YP_002574852.1 CDS fliY NC_012039.1 210681 211520 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliY 210681..211520 Campylobacter lari RM2100 7410961 YP_002574853.1 CDS Cla_0239 NC_012039.1 211517 212152 D Pfam match to PF03641.5 Lysine_decarbox; lysine decarboxylase 211517..212152 Campylobacter lari RM2100 7410962 YP_002574854.1 CDS mnmA NC_012039.1 212115 213131 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 212115..213131 Campylobacter lari RM2100 7410963 YP_002574855.1 CDS Cla_0241 NC_012039.1 213297 213719 R hypothetical protein complement(213297..213719) Campylobacter lari RM2100 7410964 YP_002574856.1 CDS pgpA NC_012039.1 213787 214278 R Pfam match to PF04608.4 PgpA; phosphatidylglycerophosphatase A complement(213787..214278) Campylobacter lari RM2100 7410965 YP_002574857.1 CDS Cla_0243 NC_012039.1 214281 215441 R sulfate adenylyltransferase complement(214281..215441) Campylobacter lari RM2100 7410152 YP_002574858.1 CDS Cla_0244 NC_012039.1 215419 216294 R Pfam match to PF00072.15 Response_reg; two-component response regulator complement(215419..216294) Campylobacter lari RM2100 7410153 YP_002574859.1 CDS ispDF NC_012039.1 216291 217406 R bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(216291..217406) Campylobacter lari RM2100 7410154 YP_002574860.1 CDS mrp NC_012039.1 217514 218617 D ATP/GTP-binding protein 217514..218617 Campylobacter lari RM2100 7410155 YP_002574861.1 CDS dapD NC_012039.1 218628 219791 D 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 218628..219791 Campylobacter lari RM2100 7410156 YP_002574862.1 CDS Cla_0248 NC_012039.1 219814 220263 R Pfam match to PF00210.15 Ferritin; bacterioferritin complement(219814..220263) Campylobacter lari RM2100 7410157 YP_002574863.1 CDS pgi NC_012039.1 220392 221615 R catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate isomerase complement(220392..221615) Campylobacter lari RM2100 7410158 YP_002574864.1 CDS galU NC_012039.1 221609 222433 R Pfam match to PF00483.14 NTP_transferase; UTP-glucose-1-phosphate uridylyltransferase complement(221609..222433) Campylobacter lari RM2100 7410159 YP_002574865.1 CDS Cla_0251 NC_012039.1 222508 223089 D Pfam match to PF01205.10 UPF0029; hypothetical protein 222508..223089 Campylobacter lari RM2100 7410160 YP_002574866.1 CDS Cla_0252 NC_012039.1 223109 223441 R hypothetical protein complement(223109..223441) Campylobacter lari RM2100 7410161 YP_002574867.1 CDS Cla_0253 NC_012039.1 223492 223824 R hypothetical protein complement(223492..223824) Campylobacter lari RM2100 7410162 YP_002574868.1 CDS Cla_0254 NC_012039.1 223821 225395 R Pfam matches to PF00005.18 ABC_tran, and to PF00005.18 ABC_tran; ABC transporter ATP-binding protein complement(223821..225395) Campylobacter lari RM2100 7410163 YP_002574869.1 CDS Cla_0255 NC_012039.1 225449 226453 D hypothetical protein 225449..226453 Campylobacter lari RM2100 7410164 YP_002574870.1 CDS Cla_0256 NC_012039.1 226455 227822 D Pfam matches to PF02878.7 PGM_PMM_I, and to PF02879.7 PGM_PMM_II; phosphohexosemutase 226455..227822 Campylobacter lari RM2100 7410165 YP_002574871.1 CDS Cla_0257 NC_012039.1 227803 228759 R Pfam match to PF01171.11 ATP_bind_3; tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) complement(227803..228759) Campylobacter lari RM2100 7410166 YP_002574872.1 CDS Cla_0258 NC_012039.1 228752 230068 R Pfam matches to PF00919.11 UPF0004, and to PF04055.12 Radical_SAM; radical SAM protein complement(228752..230068) Campylobacter lari RM2100 7410167 YP_002574873.1 CDS prfB NC_012039.1 230145 231245 D recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 230145..231245 Campylobacter lari RM2100 7410168 YP_002574874.1 CDS uspA NC_012039.1 231266 232102 D Pfam match to PF00582.17 Usp; UspA-related nucleotide-binding protein 231266..232102 Campylobacter lari RM2100 7410169 YP_002574875.1 CDS Cla_0261 NC_012039.1 232102 232791 D Pfam match to PF07885.7 Ion_trans_2; hypothetical protein 232102..232791 Campylobacter lari RM2100 7410170 YP_002574876.1 CDS Cla_0262 NC_012039.1 232805 233407 R Pfam match to PF03382.5 DUF285; hypothetical protein complement(232805..233407) Campylobacter lari RM2100 7410171 YP_002574877.1 CDS Cla_0263 NC_012039.1 233609 233812 D hypothetical protein 233609..233812 Campylobacter lari RM2100 7410172 YP_002574878.1 CDS Cla_0264 NC_012039.1 233868 234911 R Pfam match to PF03601.5 Cons_hypoth698; hypothetical protein complement(233868..234911) Campylobacter lari RM2100 7410173 YP_002574879.1 CDS Cla_0265 NC_012039.1 235023 235886 D Pfam matches to PF00126.18 HTH_1, and to PF03466.11 LysR_substrate; LysR family transcriptional regulator 235023..235886 Campylobacter lari RM2100 7410174 YP_002574880.1 CDS murD NC_012039.1 235878 237077 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(235878..237077) Campylobacter lari RM2100 7410175 YP_002574881.1 CDS mraY NC_012039.1 237077 238135 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(237077..238135) Campylobacter lari RM2100 7410176 YP_002574882.1 CDS pgm NC_012039.1 238215 239693 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 238215..239693 Campylobacter lari RM2100 7410177 YP_002574883.1 CDS fabG NC_012039.1 239709 240452 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 239709..240452 Campylobacter lari RM2100 7410178 YP_002574884.1 CDS acpS NC_012039.1 240473 240823 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(240473..240823) Campylobacter lari RM2100 7410179 YP_002574885.1 CDS fliL NC_012039.1 240823 241374 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body protein FliL complement(240823..241374) Campylobacter lari RM2100 7410180 YP_002574886.1 CDS Cla_0272 NC_012039.1 241440 242078 R Pfam match to PF08348.2 PAS_6; hypothetical protein complement(241440..242078) Campylobacter lari RM2100 7410181 YP_002574887.1 CDS katA NC_012039.1 242321 243745 D Pfam match to PF00199.10 Catalase; catalase 242321..243745 Campylobacter lari RM2100 7410182 YP_002574888.1 CDS Cla_0274 NC_012039.1 243796 244284 D Pfam match to PF00023.21 Ank; ankyrin repeat family protein 243796..244284 Campylobacter lari RM2100 7410183 YP_002574889.1 CDS argH NC_012039.1 244328 245728 D Pfam match to PF00206.11 Lyase_1; argininosuccinate lyase 244328..245728 Campylobacter lari RM2100 7410184 YP_002574890.1 CDS Cla_0276 NC_012039.1 245767 246435 R Pfam match to PF08348.2 PAS_6; hypothetical protein complement(245767..246435) Campylobacter lari RM2100 7410185 YP_002574891.1 CDS Cla_0277 NC_012039.1 246604 246966 D Pfam match to PF01042.12 Ribonuc_L-PSP; endoribonuclease L-PSP 246604..246966 Campylobacter lari RM2100 7410186 YP_002574892.1 CDS Cla_0278 NC_012039.1 246970 248409 D Pfam match to PF03606.6 DcuC; anaerobic C4-dicarboxylate transporter 246970..248409 Campylobacter lari RM2100 7410187 YP_002574893.1 CDS metC NC_012039.1 248423 249592 D Pfam match to PF01053.11 Cys_Met_Meta_PP; cystathionase beta-lyase 248423..249592 Campylobacter lari RM2100 7410188 YP_002574894.1 CDS purB2 NC_012039.1 249596 250960 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 249596..250960 Campylobacter lari RM2100 7410189 YP_002574895.1 CDS Cla_0281 NC_012039.1 250967 252307 D Pfam match to PF03972.5 MmgE_PrpD; MmgE/PrpD family protein 250967..252307 Campylobacter lari RM2100 7410190 YP_002574896.1 CDS Cla_0282 NC_012039.1 252400 252627 D Pfam match to PF04023.5 FeoA; ferrous iron transport protein A 252400..252627 Campylobacter lari RM2100 7410191 YP_002574897.1 CDS feoB NC_012039.1 252627 254651 D Pfam matches to PF01926.14 MMR_HSR1, and to PF02421.9 FeoB_N; ferrous iron transport protein B 252627..254651 Campylobacter lari RM2100 7410192 YP_002574898.1 CDS Cla_0284 NC_012039.1 254667 255332 R Pfam match to PF03070.7 TENA_THI-4; transcriptional regulator, TenA/Thi-4-like protein complement(254667..255332) Campylobacter lari RM2100 7410193 YP_002574899.1 CDS acpP NC_012039.1 255478 255711 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 255478..255711 Campylobacter lari RM2100 7410194 YP_002574900.1 CDS fabF NC_012039.1 255739 256953 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 255739..256953 Campylobacter lari RM2100 7410195 YP_002574901.1 CDS accA NC_012039.1 256955 257890 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 256955..257890 Campylobacter lari RM2100 7410196 YP_002574903.1 CDS kpsM NC_012039.1 258920 259696 D Pfam match to PF01061.15 ABC2_membrane; capsular polysaccharide ABC transporter permease 258920..259696 Campylobacter lari RM2100 7410198 YP_002574904.1 CDS kpsT NC_012039.1 259693 260364 D Pfam match to PF00005.18 ABC_tran; capsular polysaccharide ABC transporter, ATP-binding protein 259693..260364 Campylobacter lari RM2100 7410199 YP_002574905.1 CDS kpsE NC_012039.1 260354 261469 D capsular polysaccharide export inner-membrane protein KpsE 260354..261469 Campylobacter lari RM2100 7410200 YP_002574906.1 CDS kpsD NC_012039.1 261469 263127 D Pfam match to PF02563.7 Poly_export; capsular polysaccharide ABC transporter, periplasmic polysaccharide-binding protein 261469..263127 Campylobacter lari RM2100 7410201 YP_002574907.1 CDS kpsF NC_012039.1 263136 264092 D Pfam matches to PF01380.13 SIS, and to PF00571.19 CBS; arabinose-5-phosphate isomerase 263136..264092 Campylobacter lari RM2100 7410202 YP_002574908.1 CDS Cla_0295 NC_012039.1 264092 264481 D Pfam match to PF01467.17 CTP_transf_2; glycerol-3-phosphate cytidylyltransferase 264092..264481 Campylobacter lari RM2100 7410203 YP_002574909.1 CDS Cla_0296 NC_012039.1 264478 265674 D hypothetical protein 264478..265674 Campylobacter lari RM2100 7410204 YP_002574910.1 CDS Cla_0297 NC_012039.1 265686 268982 D Pfam matches to PF07719.8 TPR_2, and to PF00515.19 TPR_1; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 265686..268982 Campylobacter lari RM2100 7410205 YP_002574911.1 CDS Cla_0298 NC_012039.1 268949 271555 D capsular polysaccharide biosynthesis protein 268949..271555 Campylobacter lari RM2100 7410206 YP_002574912.1 CDS Cla_0299 NC_012039.1 271555 273402 D capsular polysaccharide biosynthesis protein, glycosyltransferase 271555..273402 Campylobacter lari RM2100 7410207 YP_002574913.1 CDS Cla_0300 NC_012039.1 273603 273848 D pseudogene; capsular polysaccharide biosynthesis protein 273603..273848 Campylobacter lari RM2100 7410208 YP_002574914.1 CDS Cla_0301 NC_012039.1 273845 275383 D capsular polysaccharide biosynthesis protein 273845..275383 Campylobacter lari RM2100 7410209 YP_002574915.1 CDS Cla_0302 NC_012039.1 275380 276111 D capsular polysaccharide biosynthesis protein 275380..276111 Campylobacter lari RM2100 7410210 YP_002574916.1 CDS Cla_0303 NC_012039.1 276092 276727 D hypothetical protein 276092..276727 Campylobacter lari RM2100 7410211 YP_002574917.1 CDS Cla_0304 NC_012039.1 276720 277355 D Pfam match to PF00702.17 Hydrolase; HAD-superfamily hydrolase 276720..277355 Campylobacter lari RM2100 7410212 YP_002574918.1 CDS Cla_0305 NC_012039.1 277352 278092 D capsular polysaccharide biosynthesis protein, nucleotidyltransferase 277352..278092 Campylobacter lari RM2100 7410213 YP_002574919.1 CDS Cla_0306 NC_012039.1 278073 278408 D hypothetical protein 278073..278408 Campylobacter lari RM2100 7410214 YP_002574920.1 CDS Cla_0307 NC_012039.1 278411 278743 D hypothetical protein 278411..278743 Campylobacter lari RM2100 7410215 YP_002574921.1 CDS Cla_0308 NC_012039.1 278736 279473 D capsular polysaccharide biosynthesis protein, nucleotidyltransferase 278736..279473 Campylobacter lari RM2100 7410216 YP_002574922.1 CDS Cla_0310 NC_012039.1 280582 282483 D contains poly-GC tract leading to end point slips (G9/G10/G11); sugar transferase) 280582..282483 Campylobacter lari RM2100 7410218 YP_002574923.1 CDS Cla_0312 NC_012039.1 284430 284858 D contains poly-GC tract leading to end point slips; Pfam match to PF08241.3 Methyltransf_11; hypothetical protein 284430..284858 Campylobacter lari RM2100 7410220 YP_002574924.1 CDS Cla_0313 NC_012039.1 285246 286019 D Pfam match to PF08241.3 Methyltransf_11; methyltransferase 285246..286019 Campylobacter lari RM2100 7410221 YP_002574925.1 CDS Cla_0314 NC_012039.1 286033 288357 D hypothetical protein 286033..288357 Campylobacter lari RM2100 7410222 YP_002574926.1 CDS Cla_0315 NC_012039.1 288354 288953 D Pfam match to PF00117.19 GATase; glutamine amidotransferase 288354..288953 Campylobacter lari RM2100 7410223 YP_002574927.1 CDS Cla_0316 NC_012039.1 288950 289711 D sugar nucleotidyltransferase 288950..289711 Campylobacter lari RM2100 7410224 YP_002574928.1 CDS cysC NC_012039.1 289708 290214 D converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 289708..290214 Campylobacter lari RM2100 7410225 YP_002574929.1 CDS kpsC NC_012039.1 290211 292238 D Pfam matches to PF05159.5 Capsule_synth, and to PF05159.5 Capsule_synth; capsular polysaccharide export protein KpsC 290211..292238 Campylobacter lari RM2100 7410226 YP_002574930.1 CDS kpsS NC_012039.1 292235 293413 D Pfam match to PF05159.5 Capsule_synth; capsular polysaccharide export protein KpsS 292235..293413 Campylobacter lari RM2100 7410227 YP_002574931.1 CDS Cla_0320 NC_012039.1 293410 294918 R glycosyltransferase complement(293410..294918) Campylobacter lari RM2100 7410228 YP_002574932.1 CDS Cla_0321 NC_012039.1 295083 296213 D hypothetical protein 295083..296213 Campylobacter lari RM2100 7410229 YP_002574933.1 CDS Cla_0322 NC_012039.1 296222 297595 D Pfam match to PF00067.13 p450; cytochrome P450 family protein 296222..297595 Campylobacter lari RM2100 7410230 YP_002574934.1 CDS Cla_0323 NC_012039.1 297592 297945 D hypothetical protein 297592..297945 Campylobacter lari RM2100 7410231 YP_002574935.1 CDS nusA NC_012039.1 297942 299033 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(297942..299033) Campylobacter lari RM2100 7410232 YP_002574936.1 CDS Cla_0325 NC_012039.1 299070 299399 D hypothetical protein 299070..299399 Campylobacter lari RM2100 7410233 YP_002574937.1 CDS miaB NC_012039.1 299396 300694 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 299396..300694 Campylobacter lari RM2100 7410234 YP_002574938.1 CDS Cla_0327 NC_012039.1 300678 301301 D Pfam match to PF04028.4 DUF374; hypothetical protein 300678..301301 Campylobacter lari RM2100 7410235 YP_002574939.1 CDS Cla_0328 NC_012039.1 301307 302272 D hypothetical protein 301307..302272 Campylobacter lari RM2100 7410236 YP_002574940.1 CDS Cla_0329 NC_012039.1 302269 302823 D hypothetical protein 302269..302823 Campylobacter lari RM2100 7410237 YP_002574941.1 CDS Cla_0330 NC_012039.1 302807 303346 D hypothetical protein 302807..303346 Campylobacter lari RM2100 7410238 YP_002574942.1 CDS Cla_0331 NC_012039.1 303333 304130 R hypothetical protein complement(303333..304130) Campylobacter lari RM2100 7410239 YP_002574943.1 CDS lgt NC_012039.1 304203 305018 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 304203..305018 Campylobacter lari RM2100 7410240 YP_002574944.1 CDS frdC NC_012039.1 305096 305875 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 305096..305875 Campylobacter lari RM2100 7410241 YP_002574945.1 CDS frdA NC_012039.1 305844 307850 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 305844..307850 Campylobacter lari RM2100 7410242 YP_002574946.1 CDS frdB NC_012039.1 307843 308568 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 307843..308568 Campylobacter lari RM2100 7410243 YP_002574947.1 CDS Cla_0336 NC_012039.1 308546 310771 D Pfam match to PF00350.14 Dynamin_N; ATP/GTP-binding protein 308546..310771 Campylobacter lari RM2100 7410244 YP_002574948.1 CDS Cla_0337 NC_012039.1 310761 312578 D ATP/GTP-binding protein 310761..312578 Campylobacter lari RM2100 7410245 YP_002574949.1 CDS pnuC NC_012039.1 312581 313240 R Pfam match to PF04973.3 NMN_transporter; nicotinamide mononucleotide transporter complement(312581..313240) Campylobacter lari RM2100 7410246 YP_002574950.1 CDS Cla_0339 NC_012039.1 313271 313777 R Pfam match to PF01243.11 Pyridox_oxidase; pyridoxamine 5'-phosphate oxidase complement(313271..313777) Campylobacter lari RM2100 7410247 YP_002574951.1 CDS Cla_0340 NC_012039.1 313781 314362 R Pfam match to PF02525.8 Flavodoxin_2; modulator of drug activity MdaB complement(313781..314362) Campylobacter lari RM2100 7410248 YP_002574952.1 CDS Cla_0341 NC_012039.1 314462 314791 D Pfam match to PF01638.8 DUF24; MarR family transcriptional regulator 314462..314791 Campylobacter lari RM2100 7410249 YP_002574953.1 CDS Cla_0342 NC_012039.1 314788 315240 D Pfam match to PF08212.3 Lipocalin_2; Blc-like protein 314788..315240 Campylobacter lari RM2100 7410250 YP_002574954.1 CDS Cla_0343 NC_012039.1 315237 316319 R Pfam matches to PF08240.3 ADH_N, and to PF00107.17 ADH_zinc_N; NADP-dependent alcohol dehydrogenase complement(315237..316319) Campylobacter lari RM2100 7410251 YP_002574955.1 CDS hsdR NC_012039.1 316474 318786 D Pfam matches to PF04313.5 HSDR_N, and to PF04851.6 ResIII; type I restriction-modification system, R subunit 316474..318786 Campylobacter lari RM2100 7410252 YP_002574956.1 CDS rloE NC_012039.1 318797 319399 D hypothetical protein 318797..319399 Campylobacter lari RM2100 7410253 YP_002574957.1 CDS rloG NC_012039.1 319405 320193 D hypothetical protein 319405..320193 Campylobacter lari RM2100 7410254 YP_002574958.1 CDS hsdS NC_012039.1 320190 321362 D Pfam matches to PF01420.10 Methylase_S, and to PF01420.10 Methylase_S; type I restriction-modification system, S subunit 320190..321362 Campylobacter lari RM2100 7410255 YP_002574959.1 CDS mloC NC_012039.1 321450 322478 D hypothetical protein 321450..322478 Campylobacter lari RM2100 7410256 YP_002574960.1 CDS moeA1 NC_012039.1 323956 325134 R Pfam matches to PF03453.8 MoeA_N, and to PF00994.15 MoCF_biosynth; molybdopterin biosynthesis protein complement(323956..325134) Campylobacter lari RM2100 7410258 YP_002574961.1 CDS moaE NC_012039.1 325136 325576 R Pfam match to PF02391.8 MoaE; molybdopterin converting factor, subunit 2 complement(325136..325576) Campylobacter lari RM2100 7410259 YP_002574962.1 CDS moaD NC_012039.1 325580 325801 R Pfam match to PF02597.11 ThiS; molybdopterin converting factor, subunit 1 complement(325580..325801) Campylobacter lari RM2100 7410260 YP_002574963.1 CDS Cla_0353 NC_012039.1 325813 327357 R Pfam matches to PF07732.6 Cu-oxidase_3, and to PF07731.5 Cu-oxidase_2; multicopper oxidase complement(325813..327357) Campylobacter lari RM2100 7410261 YP_002574964.1 CDS nspC NC_012039.1 327484 328647 D Pfam match to PF00278.13 Orn_DAP_Arg_deC; carboxynorspermidine decarboxylase 327484..328647 Campylobacter lari RM2100 7410262 YP_002574965.1 CDS fdhC NC_012039.1 328784 329713 D formate dehydrogenase, cytochrome b subunit 328784..329713 Campylobacter lari RM2100 7410263 YP_002574966.1 CDS Cla_0356 NC_012039.1 329777 330457 D hypothetical protein 329777..330457 Campylobacter lari RM2100 7410264 YP_002574967.1 CDS Cla_0357 NC_012039.1 330634 330837 D hypothetical protein 330634..330837 Campylobacter lari RM2100 7410265 YP_002574968.1 CDS fdhA NC_012039.1 330854 333676 D Pfam matches to PF04879.7 Molybdop_Fe4S4, and to PF00384.13 Molybdopterin; formate dehydrogenase, alpha subunit (selenocysteine-containing) 330854..333676 Campylobacter lari RM2100 7410266 YP_002574969.1 CDS fdhB NC_012039.1 333688 334257 D Pfam match to PF00037.18 Fer4; formate dehydrogenase, beta (iron-sulfur) subunit 333688..334257 Campylobacter lari RM2100 7410267 YP_002574970.1 CDS Cla_0360 NC_012039.1 334312 335040 D Pfam match to PF00126.18 HTH_1; ModE family transcriptional regulator 334312..335040 Campylobacter lari RM2100 7410268 YP_002574971.1 CDS Cla_0361 NC_012039.1 335088 335666 D Pfam match to PF01206.8 SirA; transcriptional regulator 335088..335666 Campylobacter lari RM2100 7410269 YP_002574972.1 CDS selD NC_012039.1 335732 336694 D Pfam match to PF02769.13 AIRS_C; selenide, water dikinase ( start at 335663) 335732..336694 Campylobacter lari RM2100 7410270 YP_002574973.1 CDS putA NC_012039.1 336835 340332 D Pfam matches to PF01619.9 Pro_dh, and to PF00171.13 Aldedh; proline dehydrogenase 336835..340332 Campylobacter lari RM2100 7410271 YP_002574974.1 CDS putP NC_012039.1 340346 341827 D Pfam match to PF00474.8 SSF; sodium/proline symporter 340346..341827 Campylobacter lari RM2100 7410272 YP_002574975.1 CDS Cla_0365 NC_012039.1 341843 342070 R Pfam match to PF01206.8 SirA; hypothetical protein complement(341843..342070) Campylobacter lari RM2100 7410273 YP_002574976.1 CDS Cla_0366 NC_012039.1 342067 343281 R Pfam matches to PF04143.5 DUF395, and to PF04143.5 DUF395; hypothetical protein complement(342067..343281) Campylobacter lari RM2100 7410274 YP_002574977.1 CDS purA NC_012039.1 343567 344817 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 343567..344817 Campylobacter lari RM2100 7410276 YP_002574978.1 CDS Cla_0369 NC_012039.1 344814 345233 D hypothetical protein 344814..345233 Campylobacter lari RM2100 7410277 YP_002574979.1 CDS Cla_0370 NC_012039.1 345233 345748 D hypothetical protein 345233..345748 Campylobacter lari RM2100 7410278 YP_002574980.1 CDS Cla_0371 NC_012039.1 345810 346361 D Pfam match to PF04368.4 DUF507; hypothetical protein 345810..346361 Campylobacter lari RM2100 7410279 YP_002574981.1 CDS pyrAa NC_012039.1 346358 347476 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 346358..347476 Campylobacter lari RM2100 7410280 YP_002574982.1 CDS Cla_0373 NC_012039.1 347473 348135 D hypothetical protein 347473..348135 Campylobacter lari RM2100 7410281 YP_002574983.1 CDS ccoN NC_012039.1 348259 349725 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 348259..349725 Campylobacter lari RM2100 7410282 YP_002574984.1 CDS ccoO NC_012039.1 349737 350402 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 349737..350402 Campylobacter lari RM2100 7410283 YP_002574985.1 CDS ccoQ NC_012039.1 350411 350614 D Pfam match to PF09672.1 Cbb3_Q_epsi; cytochrome c oxidase, cbb3-type, subunit IV 350411..350614 Campylobacter lari RM2100 7410284 YP_002574986.1 CDS ccoP NC_012039.1 350614 351492 D Pfam matches to PF00034.12 Cytochrom_C, and to PF00034.12 Cytochrom_C; cytochrome c oxidase, cbb3-type, subunit III 350614..351492 Campylobacter lari RM2100 7410285 YP_002574987.1 CDS Cla_0378 NC_012039.1 351492 351704 D hypothetical protein 351492..351704 Campylobacter lari RM2100 7410286 YP_002574988.1 CDS Cla_0379 NC_012039.1 351847 352392 D hypothetical protein 351847..352392 Campylobacter lari RM2100 7410287 YP_002574989.1 CDS Cla_0380 NC_012039.1 352382 352894 D hypothetical protein 352382..352894 Campylobacter lari RM2100 7410288 YP_002574990.1 CDS Cla_0381 NC_012039.1 352894 355278 D hypothetical protein 352894..355278 Campylobacter lari RM2100 7410289 YP_002574991.1 CDS Cla_0382 NC_012039.1 355275 358022 D Pfam match to PF00580.12 UvrD-helicase; recombination protein RecB 355275..358022 Campylobacter lari RM2100 7410290 YP_002574992.1 CDS Cla_0383 NC_012039.1 358772 360742 D Pfam matches to PF02743.9 Cache_1, and to PF00672.16 HAMP; MCP-domain signal transduction protein 358772..360742 Campylobacter lari RM2100 7410291 YP_002574993.1 CDS rplM NC_012039.1 360901 361329 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 360901..361329 Campylobacter lari RM2100 7410292 YP_002574994.1 CDS rpsI NC_012039.1 361332 361721 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 361332..361721 Campylobacter lari RM2100 7410293 YP_002574995.1 CDS cadF NC_012039.1 361968 362954 D Pfam match to PF00691.11 OmpA; outer membrane fibronectin-binding protein 361968..362954 Campylobacter lari RM2100 7410294 YP_002574996.1 CDS Cla_0387 NC_012039.1 362958 363602 D Pfam match to PF00702.17 Hydrolase; HAD superfamily hydrolase 362958..363602 Campylobacter lari RM2100 7410295 YP_002574997.1 CDS Cla_0388 NC_012039.1 363720 367274 D Pfam matches to PF01855.10 POR_N, and to PF01558.9 POR; pyruvate ferredoxin/flavodoxin oxidoreductase 363720..367274 Campylobacter lari RM2100 7410296 YP_002574998.1 CDS Cla_0389 NC_012039.1 367278 367601 D hypothetical protein 367278..367601 Campylobacter lari RM2100 7410297 YP_002574999.1 CDS ctsD NC_012039.1 367573 368964 D Pfam match to PF00263.12 Secretin; type II protein secretion system D protein CtsD 367573..368964 Campylobacter lari RM2100 7410298 YP_002575000.1 CDS ctsX NC_012039.1 368945 369274 D transformation system protein CtsG 368945..369274 Campylobacter lari RM2100 7410299 YP_002575001.1 CDS ctsE NC_012039.1 369267 370781 D Pfam match to PF00437.11 GSPII_E; type II protein secretion system E protein CtsE 369267..370781 Campylobacter lari RM2100 7410300 YP_002575002.1 CDS ctsF NC_012039.1 370973 371938 D pseudogene; Pfam match to PF00482.14 GSPII_F; type II protein secretion system F protein CtsF 370973..371938 Campylobacter lari RM2100 7410301 YP_002575003.1 CDS Cla_0394 NC_012039.1 371935 372687 R Pfam match to PF01925.10 DUF81; hypothetical protein complement(371935..372687) Campylobacter lari RM2100 7410302 YP_002575004.1 CDS Cla_0395 NC_012039.1 372672 373421 R Pfam match to PF09674.1 CHP02757; hypothetical protein complement(372672..373421) Campylobacter lari RM2100 7410303 YP_002575005.1 CDS flgK NC_012039.1 373421 375250 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(373421..375250) Campylobacter lari RM2100 7410304 YP_002575006.1 CDS Cla_0397 NC_012039.1 375261 375695 R hypothetical protein complement(375261..375695) Campylobacter lari RM2100 7410305 YP_002575007.1 CDS Cla_0398 NC_012039.1 375738 375944 R hypothetical protein complement(375738..375944) Campylobacter lari RM2100 7410306 YP_002575008.1 CDS Cla_0399 NC_012039.1 376005 376370 R hypothetical protein complement(376005..376370) Campylobacter lari RM2100 7410307 YP_002575009.1 CDS flgI NC_012039.1 376370 377416 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA complement(376370..377416) Campylobacter lari RM2100 7410308 YP_002575010.1 CDS Cla_0401 NC_012039.1 377474 378130 R Pfam match to PF03602.6 Cons_hypoth95; methylase complement(377474..378130) Campylobacter lari RM2100 7410309 YP_002575011.1 CDS Cla_0402 NC_012039.1 378123 378518 R hypothetical protein complement(378123..378518) Campylobacter lari RM2100 7410310 YP_002575012.1 CDS Cla_0403 NC_012039.1 378502 379206 R hypothetical protein complement(378502..379206) Campylobacter lari RM2100 7410311 YP_002575013.1 CDS Cla_0404 NC_012039.1 379217 379855 R hypothetical protein complement(379217..379855) Campylobacter lari RM2100 7410312 YP_002575014.1 CDS thiL NC_012039.1 379953 380774 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 379953..380774 Campylobacter lari RM2100 7410313 YP_002575015.1 CDS truD NC_012039.1 380752 381879 D catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 380752..381879 Campylobacter lari RM2100 7411049 YP_002575016.1 CDS Cla_0407 NC_012039.1 381967 382284 D hypothetical protein 381967..382284 Campylobacter lari RM2100 7411144 YP_002575017.1 CDS Cla_0408 NC_012039.1 382286 382978 D hypothetical protein 382286..382978 Campylobacter lari RM2100 7411145 YP_002575018.1 CDS fldA NC_012039.1 382979 383470 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 382979..383470 Campylobacter lari RM2100 7411146 YP_002575019.1 CDS Cla_0410 NC_012039.1 383483 383896 R hypothetical protein complement(383483..383896) Campylobacter lari RM2100 7411147 YP_002575020.1 CDS Cla_0411 NC_012039.1 383889 384599 R hypothetical protein complement(383889..384599) Campylobacter lari RM2100 7411148 YP_002575021.1 CDS Cla_0412 NC_012039.1 384596 385309 R Pfam match to PF08761.2 dUTPase_2; deoxyuridine triphosphatase domain protein complement(384596..385309) Campylobacter lari RM2100 7411149 YP_002575022.1 CDS Cla_0413 NC_012039.1 385302 385847 R ATP/GTP-binding protein complement(385302..385847) Campylobacter lari RM2100 7411150 YP_002575023.1 CDS hydA NC_012039.1 385975 387609 R Pfam matches to PF08425.1 NiFe_dehyd_N, and to PF01058.13 Oxidored_q6; quinone-reactive Ni/Fe-hydrogenase, small subunit complement(385975..387609) Campylobacter lari RM2100 7411151 YP_002575024.1 CDS tpiA NC_012039.1 387614 388294 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(387614..388294) Campylobacter lari RM2100 7411152 YP_002575025.1 CDS pgk NC_012039.1 388291 389493 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(388291..389493) Campylobacter lari RM2100 7411153 YP_002575026.1 CDS gapA NC_012039.1 389495 390490 R Pfam matches to PF00044.15 Gp_dh_N, and to PF02800.11 Gp_dh_C; glyceraldehyde-3-phosphate dehydrogenase complement(389495..390490) Campylobacter lari RM2100 7411154 YP_002575027.1 CDS Cla_0418 NC_012039.1 390550 391095 D Pfam match to PF01467.17 CTP_transf_2; nicotinate (nicotinamide) nucleotide adenylyltransferase 390550..391095 Campylobacter lari RM2100 7411155 YP_002575028.1 CDS Cla_0419 NC_012039.1 391109 391438 D Pfam match to PF02410.6 DUF143; hypothetical protein 391109..391438 Campylobacter lari RM2100 7411156 YP_002575029.1 CDS Cla_0420 NC_012039.1 391448 393823 D Pfam matches to PF00515.19 TPR_1, and to PF00515.19 TPR_1; hypothetical protein 391448..393823 Campylobacter lari RM2100 7411157 YP_002575030.1 CDS Cla_0421 NC_012039.1 393825 394199 R hypothetical protein complement(393825..394199) Campylobacter lari RM2100 7411158 YP_002575031.1 CDS Cla_0422 NC_012039.1 394263 395828 R hypothetical protein complement(394263..395828) Campylobacter lari RM2100 7411159 YP_002575032.1 CDS Cla_0423 NC_012039.1 395821 396195 R HIT family hydrolase complement(395821..396195) Campylobacter lari RM2100 7411160 YP_002575033.1 CDS fumC NC_012039.1 396239 397630 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(396239..397630) Campylobacter lari RM2100 7411161 YP_002575034.1 CDS glmS NC_012039.1 397759 399558 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(397759..399558) Campylobacter lari RM2100 7411162 YP_002575035.1 CDS Cla_0426 NC_012039.1 399562 401955 R nucleotidyltransferase, GlnD family complement(399562..401955) Campylobacter lari RM2100 7411163 YP_002575036.1 CDS Cla_0427 NC_012039.1 402032 403096 D Pfam match to PF04055.12 Radical_SAM; hypothetical protein 402032..403096 Campylobacter lari RM2100 7411164 YP_002575037.1 CDS Cla_0428 NC_012039.1 403105 404427 D Pfam match to PF00860.11 Xan_ur_permease; xanthine/uracil permease 403105..404427 Campylobacter lari RM2100 7411165 YP_002575038.1 CDS Cla_0429 NC_012039.1 404429 404869 D Pfam match to PF00156.18 Pribosyltran; nucleotide phosphoribosyltransferase 404429..404869 Campylobacter lari RM2100 7411166 YP_002575039.1 CDS bisC NC_012039.1 404931 407330 D Pfam matches to PF00384.13 Molybdopterin, and to PF01568.12 Molydop_binding; biotin sulfoxide reductase 404931..407330 Campylobacter lari RM2100 7411167 YP_002575040.1 CDS Cla_0431 NC_012039.1 407333 407866 D hypothetical protein 407333..407866 Campylobacter lari RM2100 7411168 YP_002575041.1 CDS Cla_0432 NC_012039.1 407873 409030 D hypothetical protein 407873..409030 Campylobacter lari RM2100 7411169 YP_002575042.1 CDS Cla_0433 NC_012039.1 409027 409767 D Pfam match to PF07963.3 N_methyl; hypothetical protein 409027..409767 Campylobacter lari RM2100 7411170 YP_002575043.1 CDS porA1 NC_012039.1 410165 411442 D Pfam match to PF05538.2 Campylo_MOMP; major outer membrane protein 410165..411442 Campylobacter lari RM2100 7411171 YP_002575044.1 CDS Cla_0435 NC_012039.1 411466 412206 R Pfam match to PF03883.5 DUF328; hypothetical protein complement(411466..412206) Campylobacter lari RM2100 7411172 YP_002575045.1 CDS tuf NC_012039.1 412837 414036 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 412837..414036 Campylobacter lari RM2100 7411177 YP_002575046.1 CDS rpmG NC_012039.1 414076 414234 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 414076..414234 Campylobacter lari RM2100 7411178 YP_002575047.1 CDS secE NC_012039.1 414348 414530 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 414348..414530 Campylobacter lari RM2100 7411180 YP_002575048.1 CDS nusG NC_012039.1 414535 415065 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 414535..415065 Campylobacter lari RM2100 7411181 YP_002575049.1 CDS rplK NC_012039.1 415089 415514 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 415089..415514 Campylobacter lari RM2100 7411182 YP_002575050.1 CDS rplA NC_012039.1 415578 416279 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 415578..416279 Campylobacter lari RM2100 7411183 YP_002575051.1 CDS rplJ NC_012039.1 416434 416913 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 416434..416913 Campylobacter lari RM2100 7411184 YP_002575052.1 CDS rplL NC_012039.1 416932 417309 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 416932..417309 Campylobacter lari RM2100 7411185 YP_002575053.1 CDS rpoB NC_012039.1 417406 421539 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 417406..421539 Campylobacter lari RM2100 7411186 YP_002575054.1 CDS rpoC NC_012039.1 421532 426085 D Pfam matches to PF04997.3 RNA_pol_Rpb1_1, and to PF00623.11 RNA_pol_Rpb1_2; DNA-directed RNA polymerase, beta' chain 421532..426085 Campylobacter lari RM2100 7411187 YP_002575055.1 CDS rpsL NC_012039.1 426212 426595 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 426212..426595 Campylobacter lari RM2100 7411188 YP_002575056.1 CDS rpsG NC_012039.1 426663 427133 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 426663..427133 Campylobacter lari RM2100 7411189 YP_002575057.1 CDS fusA NC_012039.1 427146 429221 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 427146..429221 Campylobacter lari RM2100 7411190 YP_002575058.1 CDS Cla_0454 NC_012039.1 429540 429809 R hypothetical protein complement(429540..429809) Campylobacter lari RM2100 7411191 YP_002575059.1 CDS Cla_0455 NC_012039.1 429796 431166 R Pfam matches to PF01595.11 DUF21, and to PF00571.19 CBS; efflux protein (DUF21 domain protein) complement(429796..431166) Campylobacter lari RM2100 7411192 YP_002575060.1 CDS Cla_0456 NC_012039.1 431245 432225 R in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transporter complement(431245..432225) Campylobacter lari RM2100 7411193 YP_002575061.1 CDS Cla_0457 NC_012039.1 432226 433704 R Pfam match to PF00474.8 SSF; sodium/proline symporter complement(432226..433704) Campylobacter lari RM2100 7411194 YP_002575062.1 CDS Cla_0458 NC_012039.1 433847 435052 D Pfam match to PF03435.9 Saccharop_dh; saccharopine dehydrogenase 433847..435052 Campylobacter lari RM2100 7411195 YP_002575063.1 CDS modB NC_012039.1 435088 435765 D Pfam match to PF00528.13 BPD_transp_1; molybdenum ABC transporter permease 435088..435765 Campylobacter lari RM2100 7411196 YP_002575064.1 CDS Cla_0465 NC_012039.1 442827 443372 D Pfam match to PF04214.4 DUF411; hypothetical protein 442827..443372 Campylobacter lari RM2100 7411202 YP_002575065.1 CDS tonB2 NC_012039.1 443383 444036 R Pfam match to PF03544.5 TonB; TonB domain protein complement(443383..444036) Campylobacter lari RM2100 7411203 YP_002575066.1 CDS exbD2 NC_012039.1 444033 444422 R Pfam match to PF02472.7 ExbD; TonB system transport protein ExbD complement(444033..444422) Campylobacter lari RM2100 7411204 YP_002575067.1 CDS exbB2 NC_012039.1 444415 444846 R Pfam match to PF01618.7 MotA_ExbB; TonB system transport protein ExbB complement(444415..444846) Campylobacter lari RM2100 7411205 YP_002575068.1 CDS Cla_0469 NC_012039.1 445000 447096 D Pfam matches to PF07715.6 Plug, and to PF00593.15 TonB_dep_Rec; iron-regulated outer membrane virulence protein, TonB receptor CfrA 445000..447096 Campylobacter lari RM2100 7411206 YP_002575069.1 CDS dnaX NC_012039.1 447093 448625 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(447093..448625) Campylobacter lari RM2100 7411207 YP_002575070.1 CDS rho NC_012039.1 448628 449932 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(448628..449932) Campylobacter lari RM2100 7411208 YP_002575071.1 CDS Cla_0472 NC_012039.1 450107 452452 D Pfam matches to PF00122.11 E1-E2_ATPase, and to PF00702.17 Hydrolase; heavy metal translocating P-type ATPase 450107..452452 Campylobacter lari RM2100 7411209 YP_002575072.1 CDS Cla_0473 NC_012039.1 452449 452655 D Pfam match to PF03597.6 CcoS; hypothetical protein 452449..452655 Campylobacter lari RM2100 7411210 YP_002575073.1 CDS Cla_0474 NC_012039.1 452668 452973 R Pfam match to PF00034.12 Cytochrom_C; cytochrome c family protein complement(452668..452973) Campylobacter lari RM2100 7411211 YP_002575074.1 CDS Cla_0475 NC_012039.1 453104 453619 D pseudogene; Pfam match to PF08645.2 PNK3P; phosphatase 453104..453619 Campylobacter lari RM2100 7411212 YP_002575075.1 CDS waaD NC_012039.1 453616 454569 D Pfam match to PF01370.12 Epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 453616..454569 Campylobacter lari RM2100 7411213 YP_002575076.1 CDS waaE NC_012039.1 454562 455935 D Pfam matches to PF00294.15 PfkB, and to PF01467.17 CTP_transf_2; D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase 454562..455935 Campylobacter lari RM2100 7411214 YP_002575077.1 CDS gmhA NC_012039.1 455925 456485 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 455925..456485 Campylobacter lari RM2100 7411215 YP_002575078.1 CDS pyk NC_012039.1 456493 457944 R Pfam matches to PF00224.12 PK, and to PF02887.7 PK_C; pyruvate kinase complement(456493..457944) Campylobacter lari RM2100 7411216 YP_002575079.1 CDS mqo NC_012039.1 457957 459303 R Pfam match to PF01266.15 DAO; malate:quinone oxidoreductase complement(457957..459303) Campylobacter lari RM2100 7411217 YP_002575080.1 CDS Cla_0481 NC_012039.1 459411 460034 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(459411..460034) Campylobacter lari RM2100 7411218 YP_002575081.1 CDS Cla_0482 NC_012039.1 460021 460353 R hypothetical protein complement(460021..460353) Campylobacter lari RM2100 7411219 YP_002575082.1 CDS Cla_0483 NC_012039.1 460355 461350 R hypothetical protein complement(460355..461350) Campylobacter lari RM2100 7411220 YP_002575083.1 CDS Cla_0484 NC_012039.1 461347 461892 R hypothetical protein complement(461347..461892) Campylobacter lari RM2100 7411221 YP_002575084.1 CDS gatC NC_012039.1 462042 462329 D Pfam match to PF02686.6 Glu-tRNAGln; glu-tRNAGln amidotransferase, subunit C 462042..462329 Campylobacter lari RM2100 7411222 YP_002575085.1 CDS Cla_0486 NC_012039.1 462351 462920 D Pfam match to PF02674.7 Colicin_V; hypothetical protein 462351..462920 Campylobacter lari RM2100 7411223 YP_002575086.1 CDS fur NC_012039.1 462910 463365 D Pfam match to PF01475.10 FUR; ferric uptake regulation protein 462910..463365 Campylobacter lari RM2100 7411224 YP_002575087.1 CDS lysS NC_012039.1 463376 464878 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 463376..464878 Campylobacter lari RM2100 7411225 YP_002575088.1 CDS glyA NC_012039.1 464879 466120 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 464879..466120 Campylobacter lari RM2100 7409905 YP_002575089.1 CDS Cla_0490 NC_012039.1 466117 466662 D Pfam match to PF08966.2 DUF1882; hypothetical protein 466117..466662 Campylobacter lari RM2100 7411050 YP_002575090.1 CDS Cla_0491 NC_012039.1 466680 467486 D Pfam match to PF05036.4 SPOR; hypothetical protein 466680..467486 Campylobacter lari RM2100 7411051 YP_002575091.1 CDS aroE NC_012039.1 467483 468268 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 467483..468268 Campylobacter lari RM2100 7411052 YP_002575092.1 CDS dnaJ NC_012039.1 468262 469383 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(468262..469383) Campylobacter lari RM2100 7411053 YP_002575093.1 CDS racR NC_012039.1 469497 470168 D Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C; two-component response regulator 469497..470168 Campylobacter lari RM2100 7411054 YP_002575094.1 CDS racS NC_012039.1 470165 471397 D Pfam match to PF02518.17 HATPase_c; two-component sensor histidine kinase 470165..471397 Campylobacter lari RM2100 7411055 YP_002575095.1 CDS recR NC_012039.1 471399 471971 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 471399..471971 Campylobacter lari RM2100 7411056 YP_002575096.1 CDS Cla_0497 NC_012039.1 471958 472986 R hypothetical protein complement(471958..472986) Campylobacter lari RM2100 7411057 YP_002575097.1 CDS uvrC NC_012039.1 472983 474776 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(472983..474776) Campylobacter lari RM2100 7411058 YP_002575098.1 CDS Cla_0499 NC_012039.1 474769 475221 R hypothetical protein complement(474769..475221) Campylobacter lari RM2100 7411059 YP_002575099.1 CDS nhaD NC_012039.1 475356 476714 D Pfam match to PF03600.7 CitMHS; Na+/H+ antiporter 475356..476714 Campylobacter lari RM2100 7411060 YP_002575100.1 CDS guaA NC_012039.1 476724 478259 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 476724..478259 Campylobacter lari RM2100 7411061 YP_002575101.1 CDS Cla_0502 NC_012039.1 478260 478811 R Pfam match to PF08242.3 Methyltransf_12; ribosomal RNA adenine dimethylase; phospholipid N-methyltransferase complement(478260..478811) Campylobacter lari RM2100 7411062 YP_002575102.1 CDS Cla_0503 NC_012039.1 478924 480363 D hypothetical protein 478924..480363 Campylobacter lari RM2100 7411063 YP_002575103.1 CDS purD NC_012039.1 480625 481875 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 480625..481875 Campylobacter lari RM2100 7411064 YP_002575104.1 CDS Cla_0505 NC_012039.1 481872 482330 D Pfam match to PF06271.3 RDD; RDD family 481872..482330 Campylobacter lari RM2100 7411065 YP_002575105.1 CDS Cla_0506 NC_012039.1 482323 484356 D Pfam match to PF04453.5 OstA_C; organic solvent tolerance protein 482323..484356 Campylobacter lari RM2100 7411066 YP_002575106.1 CDS Cla_0507 NC_012039.1 484356 485012 D hypothetical protein 484356..485012 Campylobacter lari RM2100 7411067 YP_002575107.1 CDS pnp NC_012039.1 485145 487253 D Pfam matches to PF01138.12 RNase_PH, and to PF03725.6 RNase_PH_C; polynucleotide phosphorylase 485145..487253 Campylobacter lari RM2100 7411068 YP_002575108.1 CDS Cla_0522 NC_012039.1 495152 496414 D helicase 495152..496414 Campylobacter lari RM2100 7411082 YP_002575109.1 CDS Cla_0523 NC_012039.1 496417 497061 D hypothetical protein 496417..497061 Campylobacter lari RM2100 7411083 YP_002575110.1 CDS lolA NC_012039.1 497062 497568 R participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein complement(497062..497568) Campylobacter lari RM2100 7411084 YP_002575111.1 CDS secA NC_012039.1 497686 500277 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 497686..500277 Campylobacter lari RM2100 7411085 YP_002575112.1 CDS Cla_0526 NC_012039.1 500286 501575 D Pfam matches to PF00072.15 Response_reg, and to PF00158.17 Sigma54_activat; Fis family transcriptional regulator 500286..501575 Campylobacter lari RM2100 7411086 YP_002575113.1 CDS asd NC_012039.1 501589 502605 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 501589..502605 Campylobacter lari RM2100 7411087 YP_002575114.1 CDS Cla_0528 NC_012039.1 502617 503123 D Pfam match to PF03350.7 UPF0114; hypothetical protein 502617..503123 Campylobacter lari RM2100 7411088 YP_002575115.1 CDS hemE NC_012039.1 503136 504158 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 503136..504158 Campylobacter lari RM2100 7411089 YP_002575116.1 CDS Cla_0530 NC_012039.1 504155 505063 D Pfam match to PF04055.12 Radical_SAM; radical SAM domain protein 504155..505063 Campylobacter lari RM2100 7411090 YP_002575117.1 CDS Cla_0532 NC_012039.1 505293 507695 R Pfam matches to PF00515.19 TPR_1, and to PF00515.19 TPR_1; hypothetical protein complement(505293..507695) Campylobacter lari RM2100 7411092 YP_002575118.1 CDS serS NC_012039.1 507704 508939 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(507704..508939) Campylobacter lari RM2100 7411093 YP_002575119.1 CDS trpS NC_012039.1 508951 509910 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(508951..509910) Campylobacter lari RM2100 7411094 YP_002575120.1 CDS aroK NC_012039.1 509907 510404 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(509907..510404) Campylobacter lari RM2100 7411095 YP_002575121.1 CDS engA NC_012039.1 510388 511773 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(510388..511773) Campylobacter lari RM2100 7411096 YP_002575122.1 CDS Cla_0537 NC_012039.1 511873 512805 D Pfam match to PF00892.11 DUF6; hypothetical protein 511873..512805 Campylobacter lari RM2100 7411097 YP_002575123.1 CDS Cla_0538 NC_012039.1 512795 514156 D Pfam match to PF00860.11 Xan_ur_permease; purine/xanthine transport protein 512795..514156 Campylobacter lari RM2100 7411098 YP_002575124.1 CDS kdsA NC_012039.1 514174 514980 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 514174..514980 Campylobacter lari RM2100 7411099 YP_002575125.1 CDS ribH NC_012039.1 514993 515463 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 514993..515463 Campylobacter lari RM2100 7411100 YP_002575126.1 CDS nusB NC_012039.1 515465 515863 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 515465..515863 Campylobacter lari RM2100 7411101 YP_002575127.1 CDS pyrF NC_012039.1 515860 516543 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 515860..516543 Campylobacter lari RM2100 7411102 YP_002575128.1 CDS Cla_0543 NC_012039.1 516554 516967 R Pfam match to PF03724.7 META; hypothetical protein complement(516554..516967) Campylobacter lari RM2100 7411103 YP_002575129.1 CDS Cla_0544 NC_012039.1 516979 518571 R Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal; MCP-domain signal transduction protein complement(516979..518571) Campylobacter lari RM2100 7411104 YP_002575130.1 CDS purH NC_012039.1 518587 520119 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(518587..520119) Campylobacter lari RM2100 7411105 YP_002575131.1 CDS Cla_0546 NC_012039.1 520116 520886 R Pfam match to PF00226.22 DnaJ; DnaJ-like protein complement(520116..520886) Campylobacter lari RM2100 7411106 YP_002575132.1 CDS purL NC_012039.1 520889 523066 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II complement(520889..523066) Campylobacter lari RM2100 7411107 YP_002575133.1 CDS trmE NC_012039.1 523079 524407 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(523079..524407) Campylobacter lari RM2100 7411108 YP_002575134.1 CDS Cla_0549 NC_012039.1 524404 525243 R hypothetical protein complement(524404..525243) Campylobacter lari RM2100 7411109 YP_002575135.1 CDS oxaA NC_012039.1 525227 526807 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(525227..526807) Campylobacter lari RM2100 7411110 YP_002575136.1 CDS Cla_0551 NC_012039.1 526771 527154 R Pfam match to PF01809.9 DUF37; hypothetical protein complement(526771..527154) Campylobacter lari RM2100 7411111 YP_002575137.1 CDS rnpA NC_012039.1 527142 527387 R ribonuclease P protein component complement(527142..527387) Campylobacter lari RM2100 7411112 YP_002575138.1 CDS rpmH NC_012039.1 527465 527599 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(527465..527599) Campylobacter lari RM2100 7411113 YP_002575139.1 CDS Cla_0554 NC_012039.1 527741 528211 D Pfam match to PF00583.15 Acetyltransf_1; acetyltransferase (GNAT family) 527741..528211 Campylobacter lari RM2100 7411114 YP_002575140.1 CDS Cla_0555 NC_012039.1 528211 528822 D hypothetical protein 528211..528822 Campylobacter lari RM2100 7411115 YP_002575141.1 CDS Cla_0556 NC_012039.1 528819 530036 D hypothetical protein 528819..530036 Campylobacter lari RM2100 7411116 YP_002575142.1 CDS Cla_0557 NC_012039.1 530014 530394 R Pfam match to PF03061.13 4HBT; 4-hydroxybenzoyl-CoA thioesterase complement(530014..530394) Campylobacter lari RM2100 7411117 YP_002575143.1 CDS Cla_0558 NC_012039.1 530448 534008 R type II restriction-modification enzyme complement(530448..534008) Campylobacter lari RM2100 7411118 YP_002575144.1 CDS Cla_0559 NC_012039.1 534126 534776 D thiol:disulfide interchange protein, DsbA family 534126..534776 Campylobacter lari RM2100 7411119 YP_002575145.1 CDS astA NC_012039.1 534820 536670 D Pfam match to PF05935.2 Arylsulfotrans; arylsulfate sulfotransferase 534820..536670 Campylobacter lari RM2100 7411120 YP_002575146.1 CDS Cla_0561 NC_012039.1 536700 538028 R pseudogene; Pfam match to PF03605.5 DcuA_DcuB; C4-dicarboxylate transporter, anaerobic complement(536700..538028) Campylobacter lari RM2100 7411121 YP_002575147.1 CDS pepD NC_012039.1 538226 539494 R aminoacyl-histidine dipeptidase complement(538226..539494) Campylobacter lari RM2100 7411122 YP_002575148.1 CDS Cla_0563 NC_012039.1 539548 540072 D Pfam match to PF00565.8 SNase; thermonuclease (Snase-like) 539548..540072 Campylobacter lari RM2100 7411123 YP_002575149.1 CDS Cla_0564 NC_012039.1 540081 540266 D hypothetical protein 540081..540266 Campylobacter lari RM2100 7411124 YP_002575150.1 CDS Cla_0565 NC_012039.1 540246 540809 R hypothetical protein complement(540246..540809) Campylobacter lari RM2100 7411125 YP_002575151.1 CDS Cla_0566 NC_012039.1 540812 541687 R Pfam match to PF08003.2 Methyltransf_9; methyltransferase complement(540812..541687) Campylobacter lari RM2100 7411126 YP_002575152.1 CDS flaC NC_012039.1 541726 542475 R Pfam match to PF00669.11 Flagellin_N; flagellin complement(541726..542475) Campylobacter lari RM2100 7411127 YP_002575153.1 CDS Cla_0568 NC_012039.1 542496 542975 R hypothetical protein complement(542496..542975) Campylobacter lari RM2100 7411128 YP_002575154.1 CDS Cla_0569 NC_012039.1 543006 543809 R Pfam match to PF05175.5 MTS; modification methylase, HemK family complement(543006..543809) Campylobacter lari RM2100 7411129 YP_002575155.1 CDS Cla_0570 NC_012039.1 543806 544993 R Pfam match to PF01435.9 Peptidase_M48; peptidase, M48 family complement(543806..544993) Campylobacter lari RM2100 7411130 YP_002575156.1 CDS Cla_0571 NC_012039.1 545049 546986 R Pfam matches to PF00005.18 ABC_tran, and to PF00005.18 ABC_tran; ABC transporter ATP-binding protein complement(545049..546986) Campylobacter lari RM2100 7411131 YP_002575157.1 CDS Cla_0572 NC_012039.1 547058 548188 D Pfam match to PF00149.19 Metallophos; metallophosphoesterase 547058..548188 Campylobacter lari RM2100 7410638 YP_002575158.1 CDS psd NC_012039.1 548189 548998 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 548189..548998 Campylobacter lari RM2100 7410639 YP_002575159.1 CDS Cla_0574 NC_012039.1 548973 549263 R flagellar biosynthesis protein complement(548973..549263) Campylobacter lari RM2100 7410640 YP_002575160.1 CDS Cla_0575 NC_012039.1 549266 551275 R hypothetical protein complement(549266..551275) Campylobacter lari RM2100 7410641 YP_002575161.1 CDS Cla_0576 NC_012039.1 551265 552461 R Pfam match to PF07690.7 MFS_1; major facilitator superfamily transporter complement(551265..552461) Campylobacter lari RM2100 7410642 YP_002575162.1 CDS Cla_0577 NC_012039.1 552455 552940 R hypothetical protein complement(552455..552940) Campylobacter lari RM2100 7410643 YP_002575163.1 CDS Cla_0578 NC_012039.1 552924 553202 R hypothetical protein complement(552924..553202) Campylobacter lari RM2100 7410644 YP_002575164.1 CDS hemL NC_012039.1 553199 554476 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(553199..554476) Campylobacter lari RM2100 7410645 YP_002575165.1 CDS Cla_0580 NC_012039.1 554473 554817 R hypothetical protein complement(554473..554817) Campylobacter lari RM2100 7410646 YP_002575166.1 CDS folD NC_012039.1 554849 555745 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 554849..555745 Campylobacter lari RM2100 7410647 YP_002575167.1 CDS lepP NC_012039.1 555742 556590 D Pfam match to PF00717.14 Peptidase_S24; signal peptidase I 555742..556590 Campylobacter lari RM2100 7410648 YP_002575168.1 CDS aspB NC_012039.1 556755 557921 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 556755..557921 Campylobacter lari RM2100 7410649 YP_002575169.1 CDS tgt NC_012039.1 558012 559133 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 558012..559133 Campylobacter lari RM2100 7410650 YP_002575170.1 CDS Cla_0585 NC_012039.1 559127 559885 D hypothetical protein 559127..559885 Campylobacter lari RM2100 7410651 YP_002575171.1 CDS pycA NC_012039.1 560084 561526 D biotin carboxylase; catalyses the carboxylation of the carrier protein which then transfers the carboxyl group to form malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase subunit A 560084..561526 Campylobacter lari RM2100 7410653 YP_002575172.1 CDS Cla_0588 NC_012039.1 561523 561783 D hypothetical protein 561523..561783 Campylobacter lari RM2100 7410654 YP_002575173.1 CDS Cla_0589 NC_012039.1 561783 562502 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 561783..562502 Campylobacter lari RM2100 7410655 YP_002575174.1 CDS Cla_0590 NC_012039.1 562521 563327 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 562521..563327 Campylobacter lari RM2100 7410656 YP_002575175.1 CDS ftsW NC_012039.1 563398 564561 D Pfam match to PF01098.10 FTSW_RODA_SPOVE; cell division protein, FtsW/RodA/SpoVE family 563398..564561 Campylobacter lari RM2100 7410657 YP_002575176.1 CDS cjaC NC_012039.1 564754 565512 D Pfam match to PF00497.11 SBP_bac_3; amino acid ABC transporter, permease/substrate-binding lipoprotein 564754..565512 Campylobacter lari RM2100 7410658 YP_002575177.1 CDS Cla_0593 NC_012039.1 565513 566778 R Pfam match to PF00266.10 Aminotran_5; NifS-like aminotransferase complement(565513..566778) Campylobacter lari RM2100 7410659 YP_002575178.1 CDS Cla_0594 NC_012039.1 566835 567686 D Pfam match to PF03008.5 DUF234; hypothetical protein 566835..567686 Campylobacter lari RM2100 7410660 YP_002575179.1 CDS Cla_0595 NC_012039.1 567689 568705 D Pfam matches to PF00512.16 HisKA, and to PF02518.17 HATPase_c; two-component sensor histidine kinase 567689..568705 Campylobacter lari RM2100 7410661 YP_002575180.1 CDS Cla_0597 NC_012039.1 568839 569306 D Pfam match to PF00588.10 SpoU_methylase; rRNA methylase, SpoU family 568839..569306 Campylobacter lari RM2100 7410663 YP_002575181.1 CDS Cla_0598 NC_012039.1 569303 570031 R Pfam match to PF00005.18 ABC_tran; amino acid ABC transporter ATP-binding protein complement(569303..570031) Campylobacter lari RM2100 7410664 YP_002575182.1 CDS Cla_0599 NC_012039.1 570024 570776 R Pfam match to PF00528.13 BPD_transp_1; amino acid ABC transporter permease complement(570024..570776) Campylobacter lari RM2100 7410665 YP_002575183.1 CDS Cla_0600 NC_012039.1 571000 572442 D Pfam match to PF01235.8 Na_Ala_symp; sodium:alanine symporter family protein 571000..572442 Campylobacter lari RM2100 7410666 YP_002575184.1 CDS glyS NC_012039.1 572616 574610 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 572616..574610 Campylobacter lari RM2100 7410667 YP_002575185.1 CDS Cla_0602 NC_012039.1 574607 575413 D Pfam match to PF01551.13 Peptidase_M23; peptidase, M23/M37 family 574607..575413 Campylobacter lari RM2100 7410668 YP_002575186.1 CDS Cla_0603 NC_012039.1 575413 576366 D Pfam match to PF02636.8 DUF185; hypothetical protein 575413..576366 Campylobacter lari RM2100 7410669 YP_002575187.1 CDS ribB NC_012039.1 576356 577378 R bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein complement(576356..577378) Campylobacter lari RM2100 7410670 YP_002575188.1 CDS rodA NC_012039.1 578024 579133 R Pfam match to PF01098.10 FTSW_RODA_SPOVE; rod shape-determining protein complement(578024..579133) Campylobacter lari RM2100 7410674 YP_002575189.1 CDS rluD' NC_012039.1 579206 580168 D Pfam matches to PF01479.16 S4, and to PF00849.13 PseudoU_synth_2; ribosomal large subunit pseudouridine synthase D 579206..580168 Campylobacter lari RM2100 7410675 YP_002575190.1 CDS Cla_0610 NC_012039.1 580122 581336 D Pfam matches to PF00041.12 fn3, and to PF00041.12 fn3; fibronectin type III 580122..581336 Campylobacter lari RM2100 7410676 YP_002575191.1 CDS trmB NC_012039.1 581336 582526 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 581336..582526 Campylobacter lari RM2100 7410677 YP_002575192.1 CDS ftsE NC_012039.1 582556 583215 D Pfam match to PF00005.18 ABC_tran; cell division ATP-binding protein FtsE 582556..583215 Campylobacter lari RM2100 7410678 YP_002575193.1 CDS ftsX NC_012039.1 583202 584008 D cell division protein FtsX 583202..584008 Campylobacter lari RM2100 7410679 YP_002575194.1 CDS Cla_0614 NC_012039.1 584005 585180 D Pfam match to PF01551.13 Peptidase_M23; peptidase, M23/M37 family 584005..585180 Campylobacter lari RM2100 7410680 YP_002575195.1 CDS pyrH NC_012039.1 585236 585961 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 585236..585961 Campylobacter lari RM2100 7410681 YP_002575196.1 CDS rpoZ NC_012039.1 585970 586188 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 585970..586188 Campylobacter lari RM2100 7410682 YP_002575197.1 CDS spoT NC_012039.1 586172 588361 D Pfam matches to PF01966.13 HD, and to PF04607.8 RelA_SpoT; ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3' pyrophosphohydrolase 586172..588361 Campylobacter lari RM2100 7410683 YP_002575198.1 CDS tyrS NC_012039.1 588374 589576 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 588374..589576 Campylobacter lari RM2100 7410684 YP_002575199.1 CDS Cla_0619 NC_012039.1 589573 590673 D Pfam match to PF03060.6 NPD; oxidoreductase (2-nitropropane dioxygenase) 589573..590673 Campylobacter lari RM2100 7410685 YP_002575200.1 CDS amiA NC_012039.1 590666 592606 D Pfam match to PF01520.9 Amidase_3; N-acetylmuramoyl-L-alanine amidase 590666..592606 Campylobacter lari RM2100 7410686 YP_002575201.1 CDS mnmC NC_012039.1 592603 594441 D catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 592603..594441 Campylobacter lari RM2100 7410687 YP_002575202.1 CDS Cla_0622 NC_012039.1 594572 595402 D hypothetical protein 594572..595402 Campylobacter lari RM2100 7410688 YP_002575203.1 CDS Cla_0623 NC_012039.1 595399 596505 R Pfam match to PF02163.13 Peptidase_M50; peptidase M50, membrane-associated zinc metallopeptidase complement(595399..596505) Campylobacter lari RM2100 7410689 YP_002575204.1 CDS pgsA NC_012039.1 596502 597038 R Pfam match to PF01066.12 CDP-OH_P_transf; CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyltransferase complement(596502..597038) Campylobacter lari RM2100 7410690 YP_002575205.1 CDS Cla_0625 NC_012039.1 597090 597869 R Acts on the hydroxyl group at position 7 of the steroid frame; 7-alpha-hydroxysteroid dehydrogenase complement(597090..597869) Campylobacter lari RM2100 7410691 YP_002575206.1 CDS dapA NC_012039.1 597869 598765 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(597869..598765) Campylobacter lari RM2100 7410692 YP_002575207.1 CDS Cla_0627 NC_012039.1 598755 600008 R Pfam matches to PF00675.11 Peptidase_M16, and to PF05193.12 Peptidase_M16_C; peptidase, M16 family complement(598755..600008) Campylobacter lari RM2100 7410693 YP_002575208.1 CDS pyrD NC_012039.1 600005 601063 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(600005..601063) Campylobacter lari RM2100 7410694 YP_002575209.1 CDS Cla_0629 NC_012039.1 601115 602878 R Pfam matches to PF00664.14 ABC_membrane, and to PF00005.18 ABC_tran; ABC transporter, ATP-binding protein/permease MsbA complement(601115..602878) Campylobacter lari RM2100 7410695 YP_002575210.1 CDS cysS NC_012039.1 602871 604253 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(602871..604253) Campylobacter lari RM2100 7410696 YP_002575211.1 CDS mviN NC_012039.1 604240 605706 R Pfam match to PF03023.5 MVIN; virulence factor protein MviN complement(604240..605706) Campylobacter lari RM2100 7410697 YP_002575212.1 CDS Cla_0632 NC_012039.1 605830 607686 D hypothetical protein 605830..607686 Campylobacter lari RM2100 7410698 YP_002575213.1 CDS ruvA NC_012039.1 607683 608234 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 607683..608234 Campylobacter lari RM2100 7410699 YP_002575214.1 CDS ddl NC_012039.1 608251 609291 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 608251..609291 Campylobacter lari RM2100 7410700 YP_002575215.1 CDS Cla_0635 NC_012039.1 609294 609509 D hypothetical protein 609294..609509 Campylobacter lari RM2100 7410701 YP_002575216.1 CDS Cla_0636 NC_012039.1 609512 610255 D Pfam match to PF00561.11 Abhydrolase_1; alpha/beta hydrolase 609512..610255 Campylobacter lari RM2100 7410702 YP_002575217.1 CDS murF NC_012039.1 610248 611648 D Pfam match to PF08245.3 Mur_ligase_M; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 610248..611648 Campylobacter lari RM2100 7410703 YP_002575218.1 CDS flgH NC_012039.1 611660 612361 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(611660..612361) Campylobacter lari RM2100 7410704 YP_002575219.1 CDS pta NC_012039.1 612447 613916 D Pfam match to PF01515.10 PTA_PTB; phosphate acetyltransferase 612447..613916 Campylobacter lari RM2100 7410705 YP_002575220.1 CDS ackA NC_012039.1 613925 615109 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 613925..615109 Campylobacter lari RM2100 7410706 YP_002575221.1 CDS Cla_0641 NC_012039.1 615138 615908 R Pfam match to PF03180.5 Lipoprotein_9; hypothetical protein complement(615138..615908) Campylobacter lari RM2100 7410707 YP_002575222.1 CDS Cla_0642 NC_012039.1 615977 617182 R Pfam match to PF01501.11 Glyco_transf_8; glycosyltransferase complement(615977..617182) Campylobacter lari RM2100 7410708 YP_002575223.1 CDS Cla_0643 NC_012039.1 617186 617851 R Pfam match to PF00528.13 BPD_transp_1; ABC transporter permease complement(617186..617851) Campylobacter lari RM2100 7410709 YP_002575224.1 CDS Cla_0644 NC_012039.1 617851 618807 R Pfam matches to PF00005.18 ABC_tran, and to PF09383.1 NIL; ABC transporter ATP-binding protein complement(617851..618807) Campylobacter lari RM2100 7410710 YP_002575225.1 CDS valS NC_012039.1 618811 621423 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(618811..621423) Campylobacter lari RM2100 7410711 YP_002575226.1 CDS Cla_0646 NC_012039.1 621498 622550 R Pfam match to PF00691.11 OmpA; hypothetical protein complement(621498..622550) Campylobacter lari RM2100 7410712 YP_002575227.1 CDS ppa NC_012039.1 622573 623091 R Pfam match to PF00719.10 Pyrophosphatase; inorganic pyrophosphatase complement(622573..623091) Campylobacter lari RM2100 7410713 YP_002575228.1 CDS adk NC_012039.1 623102 623674 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(623102..623674) Campylobacter lari RM2100 7410714 YP_002575229.1 CDS aspS NC_012039.1 623671 625422 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(623671..625422) Campylobacter lari RM2100 7410715 YP_002575230.1 CDS Cla_0650 NC_012039.1 625508 626338 D Pfam match to PF01513.12 NAD_kinase; inorganic polyphosphate/ATP-NAD kinase 625508..626338 Campylobacter lari RM2100 7410716 YP_002575231.1 CDS recN NC_012039.1 626338 627852 D Pfam match to PF02463.10 SMC_N; DNA repair protein RecN 626338..627852 Campylobacter lari RM2100 7410717 YP_002575232.1 CDS Cla_0652 NC_012039.1 627914 629158 D Pfam matches to PF00072.15 Response_reg, and to PF00990.12 GGDEF; two component response regulator 627914..629158 Campylobacter lari RM2100 7410718 YP_002575233.1 CDS Cla_0653 NC_012039.1 629149 629946 D Pfam match to PF01026.12 TatD_DNase; TatD-related deoxyribonuclease 629149..629946 Campylobacter lari RM2100 7409987 YP_002575234.1 CDS Cla_0654 NC_012039.1 629946 631097 D Pfam matches to PF01464.11 SLT, and to PF01476.11 LysM; peptidoglycan-binding LysM:Lytic transglycosylase, catalytic (SLT family) 629946..631097 Campylobacter lari RM2100 7409988 YP_002575235.1 CDS rlpA NC_012039.1 631033 631872 D Pfam matches to PF03330.9 DPBB_1, and to PF05036.4 SPOR; rare lipoprotein A 631033..631872 Campylobacter lari RM2100 7409989 YP_002575236.1 CDS Cla_0656 NC_012039.1 631877 632365 D YrbI family phosphatase 631877..632365 Campylobacter lari RM2100 7409990 YP_002575237.1 CDS Cla_0657 NC_012039.1 632356 632862 D hypothetical protein 632356..632862 Campylobacter lari RM2100 7409991 YP_002575238.1 CDS Cla_0658 NC_012039.1 632844 633302 D Pfam match to PF03968.5 OstA; OstA family protein 632844..633302 Campylobacter lari RM2100 7409992 YP_002575239.1 CDS engB NC_012039.1 633299 633898 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 633299..633898 Campylobacter lari RM2100 7409993 YP_002575240.1 CDS Cla_0660 NC_012039.1 633888 634379 D hypothetical protein 633888..634379 Campylobacter lari RM2100 7409994 YP_002575241.1 CDS pbpC NC_012039.1 634381 636207 D Pfam matches to PF03717.6 PBP_dimer, and to PF00905.13 Transpeptidase; penicillin-binding protein 2 634381..636207 Campylobacter lari RM2100 7409995 YP_002575242.1 CDS queA NC_012039.1 636200 637228 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(636200..637228) Campylobacter lari RM2100 7409996 YP_002575243.1 CDS tatC NC_012039.1 637212 637955 R Pfam match to PF00902.9 TatC; Sec-independent protein secretion pathway component TatC complement(637212..637955) Campylobacter lari RM2100 7409997 YP_002575244.1 CDS Cla_0664 NC_012039.1 637958 638350 R mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase complement(637958..638350) Campylobacter lari RM2100 7409998 YP_002575245.1 CDS Cla_0665 NC_012039.1 638502 639476 D Pfam match to PF03773.4 DUF318; hypothetical protein 638502..639476 Campylobacter lari RM2100 7409999 YP_002575246.1 CDS Cla_0666 NC_012039.1 639485 639802 D Pfam match to PF01022.11 HTH_5; ArsR family transcriptional regulator 639485..639802 Campylobacter lari RM2100 7410000 YP_002575247.1 CDS Cla_0667 NC_012039.1 639799 640848 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(639799..640848) Campylobacter lari RM2100 7410001 YP_002575248.1 CDS Cla_0668 NC_012039.1 640929 641399 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 640929..641399 Campylobacter lari RM2100 7410002 YP_002575249.1 CDS lysC NC_012039.1 641399 642601 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 641399..642601 Campylobacter lari RM2100 7410003 YP_002575250.1 CDS Cla_0670 NC_012039.1 642602 643138 D hypothetical protein 642602..643138 Campylobacter lari RM2100 7410004 YP_002575251.1 CDS Cla_0671 NC_012039.1 643135 643791 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 643135..643791 Campylobacter lari RM2100 7410005 YP_002575252.1 CDS folP NC_012039.1 643778 644920 D Pfam match to PF00809.13 Pterin_bind; dihydropteroate synthase 643778..644920 Campylobacter lari RM2100 7410006 YP_002575253.1 CDS ligA NC_012039.1 644923 646878 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 644923..646878 Campylobacter lari RM2100 7410007 YP_002575254.1 CDS tlyA NC_012039.1 646868 647590 D Pfam match to PF01728.10 FtsJ; ribosomal RNA large subunit methyltransferase, FtsJ family 646868..647590 Campylobacter lari RM2100 7410008 YP_002575255.1 CDS ribF NC_012039.1 647556 648398 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 647556..648398 Campylobacter lari RM2100 7410009 YP_002575256.1 CDS Cla_0676 NC_012039.1 648398 649102 D Pfam match to PF08242.3 Methyltransf_12; methylase 648398..649102 Campylobacter lari RM2100 7410010 YP_002575257.1 CDS Cla_0677 NC_012039.1 649132 650232 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(649132..650232) Campylobacter lari RM2100 7410011 YP_002575258.1 CDS pepA NC_012039.1 650229 651680 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(650229..651680) Campylobacter lari RM2100 7410012 YP_002575259.1 CDS Cla_0679 NC_012039.1 651677 652270 R hypothetical protein complement(651677..652270) Campylobacter lari RM2100 7410013 YP_002575260.1 CDS apt NC_012039.1 652273 652812 R Pfam match to PF00156.18 Pribosyltran; adenine phosphoribosyltransferase complement(652273..652812) Campylobacter lari RM2100 7410014 YP_002575261.1 CDS Cla_0681 NC_012039.1 652809 653141 R hypothetical protein complement(652809..653141) Campylobacter lari RM2100 7410015 YP_002575262.1 CDS rpiB NC_012039.1 653138 653575 R Pfam match to PF02502.9 LacAB_rpiB; ribose 5-phosphate isomerase B complement(653138..653575) Campylobacter lari RM2100 7410016 YP_002575263.1 CDS cheB NC_012039.1 653716 654267 D Pfam match to PF01339.8 CheB_methylest; protein-glutamate methylesterase 653716..654267 Campylobacter lari RM2100 7410017 YP_002575264.1 CDS cheR NC_012039.1 654277 655059 D Pfam match to PF01739.9 CheR; chemotaxis protein methyltransferase 654277..655059 Campylobacter lari RM2100 7410018 YP_002575265.1 CDS Cla_0685 NC_012039.1 655056 656249 R Pfam match to PF07690.7 MFS_1; hypothetical protein complement(655056..656249) Campylobacter lari RM2100 7410019 YP_002575266.1 CDS Cla_0686 NC_012039.1 656356 657402 D Pfam match to PF04055.12 Radical_SAM; hypothetical protein 656356..657402 Campylobacter lari RM2100 7410020 YP_002575267.1 CDS Cla_0687 NC_012039.1 657402 658622 D Pfam match to PF05193.12 Peptidase_M16_C; peptidase, M16 family 657402..658622 Campylobacter lari RM2100 7410021 YP_002575268.1 CDS recG NC_012039.1 658612 660435 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 658612..660435 Campylobacter lari RM2100 7410022 YP_002575269.1 CDS Cla_0689 NC_012039.1 660428 661030 D Pfam match to PF00027.20 cNMP_binding; transcriptional regulator 660428..661030 Campylobacter lari RM2100 7410023 YP_002575270.1 CDS Cla_0690 NC_012039.1 661074 661721 D Pfam match to PF00528.13 BPD_transp_1; ABC transporter, His/Glu/Gln/Arg/opine family (permease) 661074..661721 Campylobacter lari RM2100 7410024 YP_002575271.1 CDS Cla_0691 NC_012039.1 661714 662373 D Pfam match to PF00528.13 BPD_transp_1; ABC transporter, His/Glu/Gln/Arg/opine family (permease) 661714..662373 Campylobacter lari RM2100 7410025 YP_002575272.1 CDS Cla_0692 NC_012039.1 662375 663112 D Pfam match to PF00005.18 ABC_tran; ABC transporter, His/Glu/Gln/Arg/opine family (ATP-binding protein) 662375..663112 Campylobacter lari RM2100 7410026 YP_002575273.1 CDS cjaA NC_012039.1 663189 664016 D Pfam match to PF00497.11 SBP_bac_3; amino acid ABC transporter substrate-binding protein 663189..664016 Campylobacter lari RM2100 7410027 YP_002575274.1 CDS cjaB NC_012039.1 664019 665242 D Pfam match to PF07690.7 MFS_1; major facilitator family transporter CjaB 664019..665242 Campylobacter lari RM2100 7410028 YP_002575275.1 CDS Cla_0695 NC_012039.1 665309 666715 D Pfam match to PF02080.12 TrkA_C; TrkA domain protein 665309..666715 Campylobacter lari RM2100 7410029 YP_002575276.1 CDS aroB NC_012039.1 666723 667781 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 666723..667781 Campylobacter lari RM2100 7410030 YP_002575277.1 CDS Cla_0697 NC_012039.1 667778 669307 D Pfam match to PF00924.9 MS_channel; mechanosensitive ion channel MscS 667778..669307 Campylobacter lari RM2100 7410031 YP_002575278.1 CDS Cla_0698 NC_012039.1 669304 670560 D Pfam matches to PF00919.11 UPF0004, and to PF04055.12 Radical_SAM; MiaB-like tRNA modifying enzyme 669304..670560 Campylobacter lari RM2100 7410032 YP_002575279.1 CDS ftsH1 NC_012039.1 670550 672148 D Pfam match to PF00004.20 AAA; cell division protein FtsH 670550..672148 Campylobacter lari RM2100 7410033 YP_002575280.1 CDS mogA NC_012039.1 672151 672678 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 672151..672678 Campylobacter lari RM2100 7410034 YP_002575281.1 CDS Cla_0701 NC_012039.1 672692 673066 R Pfam match to PF00581.11 Rhodanese; rhodanese domain protein complement(672692..673066) Campylobacter lari RM2100 7410035 YP_002575282.1 CDS Cla_0702 NC_012039.1 673069 673404 R hypothetical protein complement(673069..673404) Campylobacter lari RM2100 7410036 YP_002575283.1 CDS htpG NC_012039.1 673401 675230 R molecular chaperone; heat shock protein 90 complement(673401..675230) Campylobacter lari RM2100 7410037 YP_002575284.1 CDS Cla_0704 NC_012039.1 675241 675609 R Pfam match to PF02537.6 CRCB; camphor resistance protein CrcB complement(675241..675609) Campylobacter lari RM2100 7410038 YP_002575285.1 CDS plsC NC_012039.1 675606 676295 R Pfam match to PF01553.12 Acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(675606..676295) Campylobacter lari RM2100 7410039 YP_002575286.1 CDS Cla_0706 NC_012039.1 676273 677478 R hypothetical protein complement(676273..677478) Campylobacter lari RM2100 7410040 YP_002575287.1 CDS purQ NC_012039.1 677472 678122 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I complement(677472..678122) Campylobacter lari RM2100 7410041 YP_002575288.1 CDS purS NC_012039.1 678119 678355 R Pfam match to PF02700.5 PurS; phosphoribosylformylglycinamidine synthase, PurS subunit complement(678119..678355) Campylobacter lari RM2100 7410042 YP_002575289.1 CDS purC NC_012039.1 678364 679077 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(678364..679077) Campylobacter lari RM2100 7410043 YP_002575290.1 CDS Cla_0710 NC_012039.1 679079 680395 R Pfam matches to PF00595.15 PDZ, and to PF03572.9 Peptidase_S41; peptidase, S41 family complement(679079..680395) Campylobacter lari RM2100 7410044 YP_002575291.1 CDS clpB NC_012039.1 680603 683176 D Pfam matches to PF02861.11 Clp_N, and to PF00004.20 AAA; protein disaggregating chaperone ClpB 680603..683176 Campylobacter lari RM2100 7410045 YP_002575292.1 CDS hyaA NC_012039.1 683336 684475 D Pfam matches to PF08425.1 NiFe_dehyd_N, and to PF01058.13 Oxidored_q6; Ni/Fe-hydrogenase, small subunit 683336..684475 Campylobacter lari RM2100 7410046 YP_002575293.1 CDS hyaB NC_012039.1 684478 686193 D Pfam match to PF00374.10 NiFeSe_Hases; Ni/Fe-hydrogenase, large subunit 684478..686193 Campylobacter lari RM2100 7410047 YP_002575294.1 CDS hyaC NC_012039.1 686209 686901 D Pfam match to PF01292.11 Ni_hydr_CYTB; Ni/Fe hydrogenase, cytochrome b subunit 686209..686901 Campylobacter lari RM2100 7410048 YP_002575295.1 CDS hyaD NC_012039.1 686898 687431 D Pfam match to PF01750.9 HycI; Ni/Fe hydrogenase, expression/formation protein 686898..687431 Campylobacter lari RM2100 7410049 YP_002575296.1 CDS Cla_0716 NC_012039.1 687453 687875 R hypothetical protein complement(687453..687875) Campylobacter lari RM2100 7410050 YP_002575297.1 CDS gltX1 NC_012039.1 688009 689304 D charges one glutamine molecule and pairs it with tRNA(Gln); glutamylglutaminyl-tRNA synthetase 688009..689304 Campylobacter lari RM2100 7410051 YP_002575298.1 CDS Cla_0718 NC_012039.1 689306 689593 D Pfam match to PF02325.8 YGGT; hypothetical protein 689306..689593 Campylobacter lari RM2100 7410052 YP_002575299.1 CDS Cla_0719 NC_012039.1 689594 691231 D Pfam match to PF01464.11 SLT; soluble lytic murein transglycosylase, SLT family 689594..691231 Campylobacter lari RM2100 7410053 YP_002575300.1 CDS Cla_0720 NC_012039.1 691119 691613 R hypothetical protein complement(691119..691613) Campylobacter lari RM2100 7410054 YP_002575301.1 CDS mobB NC_012039.1 691700 692179 D Pfam match to PF03205.5 MobB; molybdopterin-guanine dinucleotide biosynthesis protein B 691700..692179 Campylobacter lari RM2100 7410055 YP_002575302.1 CDS fbp NC_012039.1 692189 693037 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 692189..693037 Campylobacter lari RM2100 7410056 YP_002575303.1 CDS Cla_0723 NC_012039.1 693037 693231 D hypothetical protein 693037..693231 Campylobacter lari RM2100 7410057 YP_002575304.1 CDS metS NC_012039.1 693246 695135 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 693246..695135 Campylobacter lari RM2100 7410058 YP_002575305.1 CDS Cla_0725 NC_012039.1 695136 696077 D hypothetical protein 695136..696077 Campylobacter lari RM2100 7410059 YP_002575306.1 CDS peb2 NC_012039.1 696140 696883 D hypothetical protein 696140..696883 Campylobacter lari RM2100 7410060 YP_002575307.1 CDS Cla_0727 NC_012039.1 696927 697499 R Pfam match to PF04264.4 YceI; hypothetical protein complement(696927..697499) Campylobacter lari RM2100 7410061 YP_002575308.1 CDS Cla_0728 NC_012039.1 697563 698228 R Pfam match to PF06508.4 ExsB; exoenzyme S synthesis protein B complement(697563..698228) Campylobacter lari RM2100 7410062 YP_002575309.1 CDS Cla_0729 NC_012039.1 698281 698694 D Pfam match to PF02130.8 UPF0054; hypothetical protein 698281..698694 Campylobacter lari RM2100 7410063 YP_002575310.1 CDS Cla_0730 NC_012039.1 698695 699663 D hypothetical protein 698695..699663 Campylobacter lari RM2100 7410064 YP_002575311.1 CDS Cla_0731 NC_012039.1 699668 700078 R periplasmic protein complement(699668..700078) Campylobacter lari RM2100 7410065 YP_002575312.1 CDS Cla_0732 NC_012039.1 700193 700723 D Pfam match to PF01694.13 Rhomboid; hypothetical protein 700193..700723 Campylobacter lari RM2100 7410066 YP_002575313.1 CDS Cla_0733 NC_012039.1 700720 701211 D Pfam match to PF00300.13 PGAM; phosphohistidine phosphatase SixA 700720..701211 Campylobacter lari RM2100 7410067 YP_002575314.1 CDS Cla_0734 NC_012039.1 701930 702613 D Pfam match to PF01177.13 Asp_Glu_race; aspartate racemase 701930..702613 Campylobacter lari RM2100 7410068 YP_002575315.1 CDS xerD NC_012039.1 702613 703680 D Pfam match to PF00589.13 Phage_integrase; integrase/recombinase 702613..703680 Campylobacter lari RM2100 7410069 YP_002575316.1 CDS murA NC_012039.1 703738 704994 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 703738..704994 Campylobacter lari RM2100 7410070 YP_002575317.1 CDS moeA2 NC_012039.1 704991 706151 D Pfam matches to PF03453.8 MoeA_N, and to PF00994.15 MoCF_biosynth; molybdopterin biosynthesis protein 704991..706151 Campylobacter lari RM2100 7410071 YP_002575318.1 CDS Cla_0738 NC_012039.1 706182 706478 R hypothetical protein complement(706182..706478) Campylobacter lari RM2100 7410072 YP_002575319.1 CDS Cla_0740 NC_012039.1 706668 707939 R hypothetical protein complement(706668..707939) Campylobacter lari RM2100 7410074 YP_002575320.1 CDS flgA NC_012039.1 708068 708754 D required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 708068..708754 Campylobacter lari RM2100 7410075 YP_002575321.1 CDS ubiX NC_012039.1 708751 709332 D catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 708751..709332 Campylobacter lari RM2100 7410076 YP_002575322.1 CDS coaD NC_012039.1 709336 709815 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 709336..709815 Campylobacter lari RM2100 7410077 YP_002575323.1 CDS tmk NC_012039.1 709806 710390 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 709806..710390 Campylobacter lari RM2100 7410078 YP_002575324.1 CDS hisS NC_012039.1 710383 711609 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 710383..711609 Campylobacter lari RM2100 7410079 YP_002575325.1 CDS speA NC_012039.1 711606 713435 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 711606..713435 Campylobacter lari RM2100 7410080 YP_002575326.1 CDS cysE NC_012039.1 713432 714037 D serine O-acetyltransferase 713432..714037 Campylobacter lari RM2100 7410081 YP_002575327.1 CDS murG NC_012039.1 714034 715065 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase 714034..715065 Campylobacter lari RM2100 7410082 YP_002575328.1 CDS Cla_0749 NC_012039.1 715058 715675 R hypothetical protein complement(715058..715675) Campylobacter lari RM2100 7410083 YP_002575329.1 CDS rpoN NC_012039.1 715682 716929 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(715682..716929) Campylobacter lari RM2100 7410084 YP_002575330.1 CDS Cla_0751 NC_012039.1 716929 717654 R Pfam match to PF00005.18 ABC_tran; ABC transporter ATP-binding protein complement(716929..717654) Campylobacter lari RM2100 7410085 YP_002575331.1 CDS Cla_0752 NC_012039.1 717647 718054 R Pfam match to PF02367.8 UPF0079; hypothetical protein complement(717647..718054) Campylobacter lari RM2100 7410086 YP_002575332.1 CDS Cla_0753 NC_012039.1 718051 718299 R Pfam match to PF01479.16 S4; S4 RNA-binding domain protein complement(718051..718299) Campylobacter lari RM2100 7410087 YP_002575333.1 CDS argG NC_012039.1 718413 719633 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 718413..719633 Campylobacter lari RM2100 7410088 YP_002575334.1 CDS rplI NC_012039.1 719643 720086 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 719643..720086 Campylobacter lari RM2100 7410089 YP_002575335.1 CDS hslV NC_012039.1 720086 720628 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 720086..720628 Campylobacter lari RM2100 7410090 YP_002575336.1 CDS hslU NC_012039.1 720625 721944 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 720625..721944 Campylobacter lari RM2100 7410091 YP_002575337.1 CDS era NC_012039.1 721941 722813 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 721941..722813 Campylobacter lari RM2100 7410092 YP_002575338.1 CDS Cla_0759 NC_012039.1 722803 723813 D hypothetical protein 722803..723813 Campylobacter lari RM2100 7410093 YP_002575339.1 CDS Cla_0760 NC_012039.1 723776 724315 D hypothetical protein 723776..724315 Campylobacter lari RM2100 7410094 YP_002575340.1 CDS Cla_0762 NC_012039.1 724663 724878 R hypothetical protein complement(724663..724878) Campylobacter lari RM2100 7410096 YP_002575341.1 CDS fliS NC_012039.1 724875 725246 R flagellin specific chaperone; flagellar protein FliS complement(724875..725246) Campylobacter lari RM2100 7410097 YP_002575342.1 CDS fliD NC_012039.1 725265 727565 R Pfam matches to PF02465.9 FliD_N, and to PF07196.4 Flagellin_IN; flagellar filament cap protein FliD complement(725265..727565) Campylobacter lari RM2100 7410098 YP_002575343.1 CDS flaG NC_012039.1 727568 727909 R Pfam match to PF03646.6 FlaG; flagellar protein FlaG complement(727568..727909) Campylobacter lari RM2100 7410099 YP_002575344.1 CDS ubiD NC_012039.1 728031 729824 R Pfam match to PF01977.7 UbiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(728031..729824) Campylobacter lari RM2100 7410100 YP_002575345.1 CDS hemC NC_012039.1 729825 730751 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(729825..730751) Campylobacter lari RM2100 7410101 YP_002575346.1 CDS Cla_0768 NC_012039.1 730742 731137 R hypothetical protein complement(730742..731137) Campylobacter lari RM2100 7410102 YP_002575347.1 CDS proS NC_012039.1 731134 732831 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(731134..732831) Campylobacter lari RM2100 7410103 YP_002575348.1 CDS hemA NC_012039.1 732821 734128 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(732821..734128) Campylobacter lari RM2100 7410104 YP_002575349.1 CDS ispB NC_012039.1 734128 735021 R Pfam match to PF00348.8 polyprenyl_synt; polyprenyl synthetase complement(734128..735021) Campylobacter lari RM2100 7410105 YP_002575350.1 CDS Cla_0772 NC_012039.1 735072 735500 R hypothetical protein complement(735072..735500) Campylobacter lari RM2100 7410106 YP_002575351.1 CDS Cla_0773 NC_012039.1 735503 735766 R Pfam match to PF09442.1 DUF2018; hypothetical protein complement(735503..735766) Campylobacter lari RM2100 7410107 YP_002575352.1 CDS Cla_0774 NC_012039.1 735770 736396 R Pfam match to PF00702.17 Hydrolase; HAD superfamily hydrolase complement(735770..736396) Campylobacter lari RM2100 7410108 YP_002575353.1 CDS Cla_0775 NC_012039.1 736393 736725 R hypothetical protein complement(736393..736725) Campylobacter lari RM2100 7410109 YP_002575354.1 CDS Cla_0776 NC_012039.1 736722 738347 R Pfam matches to PF00999.12 Na_H_Exchanger, and to PF02254.9 TrkA_N; sodium/hydrogen exchanger family protein complement(736722..738347) Campylobacter lari RM2100 7410110 YP_002575355.1 CDS hspR NC_012039.1 738372 738746 R Pfam match to PF00376.14 MerR; MerR family transcriptional regulator complement(738372..738746) Campylobacter lari RM2100 7410111 YP_002575356.1 CDS cbpA NC_012039.1 738756 739622 R Pfam matches to PF00226.22 DnaJ, and to PF01556.9 DnaJ_C; co-chaperone-curved DNA binding protein A complement(738756..739622) Campylobacter lari RM2100 7410112 YP_002575357.1 CDS htrA NC_012039.1 739772 741190 D Pfam match to PF00089.17 Trypsin; periplasmic serine protease DO; heat shock protein HtrA 739772..741190 Campylobacter lari RM2100 7410113 YP_002575358.1 CDS Cla_0780 NC_012039.1 741203 741877 D Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C; two-component response regulator 741203..741877 Campylobacter lari RM2100 7410114 YP_002575359.1 CDS Cla_0781 NC_012039.1 741874 743118 D Pfam matches to PF00672.16 HAMP, and to PF00512.16 HisKA; two-component sensor histidine kinase 741874..743118 Campylobacter lari RM2100 7410115 YP_002575360.1 CDS rep NC_012039.1 743126 745153 D Pfam match to PF00580.12 UvrD-helicase; ATP-dependent DNA helicase 743126..745153 Campylobacter lari RM2100 7410116 YP_002575361.1 CDS tpx NC_012039.1 745208 745732 D Pfam match to PF08534.1 Redoxin; thiol peroxidase 745208..745732 Campylobacter lari RM2100 7410117 YP_002575362.1 CDS Cla_0784 NC_012039.1 745772 746377 D Pfam match to PF00325.11 Crp; Crp/Fnr family transcriptional regulator 745772..746377 Campylobacter lari RM2100 7410118 YP_002575363.1 CDS Cla_0785 NC_012039.1 746437 746637 D hypothetical protein 746437..746637 Campylobacter lari RM2100 7410119 YP_002575364.1 CDS msrA NC_012039.1 746634 747140 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(746634..747140) Campylobacter lari RM2100 7410120 YP_002575365.1 CDS hypA NC_012039.1 747130 747495 R Pfam match to PF01155.10 HypA; hydrogenase expression/formation protein HypA complement(747130..747495) Campylobacter lari RM2100 7410121 YP_002575366.1 CDS hypE NC_012039.1 747495 748505 R Pfam matches to PF00586.15 AIRS, and to PF02769.13 AIRS_C; hydrogenase expression/formation protein HypE complement(747495..748505) Campylobacter lari RM2100 7410122 YP_002575367.1 CDS hypD NC_012039.1 748468 749559 R Pfam match to PF01924.7 HypD; hydrogenase expression/formation protein HypD complement(748468..749559) Campylobacter lari RM2100 7410123 YP_002575368.1 CDS hypC NC_012039.1 749546 749827 R Pfam match to PF01455.9 HupF_HypC; hydrogenase assembly chaperone HypC complement(749546..749827) Campylobacter lari RM2100 7410124 YP_002575369.1 CDS hypB NC_012039.1 749827 750561 R Pfam match to PF02492.10 cobW; hydrogenase accessory protein HypB complement(749827..750561) Campylobacter lari RM2100 7410125 YP_002575370.1 CDS hypF NC_012039.1 750625 752823 R Pfam matches to PF00708.9 Acylphosphatase, and to PF07503.3 zf-HYPF; transcriptional regulatory protein HypF complement(750625..752823) Campylobacter lari RM2100 7410126 YP_002575371.1 CDS Cla_0793 NC_012039.1 752804 754363 R hypothetical protein complement(752804..754363) Campylobacter lari RM2100 7410127 YP_002575372.1 CDS Cla_0794 NC_012039.1 754395 755060 R Pfam match to PF01863.8 DUF45; hypothetical protein complement(754395..755060) Campylobacter lari RM2100 7410128 YP_002575373.1 CDS Cla_0795 NC_012039.1 755036 756352 R Pfam matches to PF01554.9 MatE, and to PF01554.9 MatE; hypothetical protein complement(755036..756352) Campylobacter lari RM2100 7410129 YP_002575374.1 CDS Cla_0796 NC_012039.1 756999 757643 R contains poly-GC tract -leading to end point slips (G9/G10); hypothetical protein complement(756999..757643) Campylobacter lari RM2100 7410130 YP_002575375.1 CDS Cla_0797 NC_012039.1 757645 758877 R hypothetical protein complement(757645..758877) Campylobacter lari RM2100 7410131 YP_002575376.1 CDS pstB NC_012039.1 758934 759674 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein complement(758934..759674) Campylobacter lari RM2100 7410132 YP_002575377.1 CDS pstA NC_012039.1 759671 760759 R Pfam match to PF00528.13 BPD_transp_1; phosphate ABC transporter permease complement(759671..760759) Campylobacter lari RM2100 7410133 YP_002575378.1 CDS pstC NC_012039.1 760756 761670 R Pfam match to PF00528.13 BPD_transp_1; phosphate ABC transporter permease complement(760756..761670) Campylobacter lari RM2100 7410134 YP_002575379.1 CDS pstS NC_012039.1 761685 762668 R phosphate ABC transporter substrate-binding protein complement(761685..762668) Campylobacter lari RM2100 7410135 YP_002575380.1 CDS Cla_0802 NC_012039.1 762753 763412 D Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C; two-component response regulator 762753..763412 Campylobacter lari RM2100 7410136 YP_002575381.1 CDS Cla_0803 NC_012039.1 763406 764695 D Pfam matches to PF00512.16 HisKA, and to PF02518.17 HATPase_c; two-component sensor histidine kinase 763406..764695 Campylobacter lari RM2100 7410137 YP_002575382.1 CDS cft NC_012039.1 764774 765268 D Pfam match to PF00210.15 Ferritin; ferritin 764774..765268 Campylobacter lari RM2100 7410138 YP_002575383.1 CDS Cla_0805 NC_012039.1 765377 766012 D Pfam match to PF00717.14 Peptidase_S24; peptidase S24 765377..766012 Campylobacter lari RM2100 7410139 YP_002575384.1 CDS Cla_0806 NC_012039.1 766195 768132 D cytochrome c family protein 766195..768132 Campylobacter lari RM2100 7410140 YP_002575385.1 CDS Cla_0807 NC_012039.1 768180 770246 D cytochrome c family protein 768180..770246 Campylobacter lari RM2100 7410141 YP_002575386.1 CDS Cla_0808 NC_012039.1 770303 770902 D hypothetical protein 770303..770902 Campylobacter lari RM2100 7410142 YP_002575387.1 CDS Cla_0809 NC_012039.1 770912 773611 D Pfam match to PF01578.11 Cytochrom_C_asm; cytochrome c biogenesis protein 770912..773611 Campylobacter lari RM2100 7410143 YP_002575388.1 CDS Cla_0810 NC_012039.1 773613 773837 R hypothetical protein complement(773613..773837) Campylobacter lari RM2100 7410144 YP_002575389.1 CDS lpxD NC_012039.1 773830 774789 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(773830..774789) Campylobacter lari RM2100 7410145 YP_002575390.1 CDS ilvH NC_012039.1 774786 775253 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(774786..775253) Campylobacter lari RM2100 7410146 YP_002575391.1 CDS ilvB NC_012039.1 775250 776959 R catalyzes the formation of 2-acetolactate from pyruvate, leucine resistant; also known as acetolactate synthase 3 large subunit; acetolactate synthase 3 catalytic subunit complement(775250..776959) Campylobacter lari RM2100 7410147 YP_002575392.1 CDS oorC NC_012039.1 777043 777600 R Pfam match to PF01558.9 POR; 2-oxoglutarate-acceptor oxidoreductase subunit OorC complement(777043..777600) Campylobacter lari RM2100 7410148 YP_002575393.1 CDS oorB NC_012039.1 777597 778442 R Pfam match to PF02775.12 TPP_enzyme_C; 2-oxoglutarate-acceptor oxidoreductase subunit OorB complement(777597..778442) Campylobacter lari RM2100 7410149 YP_002575394.1 CDS oorA NC_012039.1 778444 779568 R Pfam match to PF01855.10 POR_N; 2-oxoglutarate-acceptor oxidoreductase subunit OorA complement(778444..779568) Campylobacter lari RM2100 7410150 YP_002575395.1 CDS oorD NC_012039.1 779577 779885 R Pfam matches to PF00037.18 Fer4, and to PF00037.18 Fer4; 2-oxoglutarate-acceptor oxidoreductase subunit OorD complement(779577..779885) Campylobacter lari RM2100 7410151 YP_002575396.1 CDS mdh NC_012039.1 780062 780958 R Pfam matches to PF00056.14 Ldh_1_N, and to PF02866.9 Ldh_1_C; malate dehydrogenase complement(780062..780958) Campylobacter lari RM2100 7410398 YP_002575397.1 CDS Cla_0819 NC_012039.1 780977 783547 R hypothetical protein complement(780977..783547) Campylobacter lari RM2100 7410399 YP_002575398.1 CDS pabC NC_012039.1 783465 784418 D Pfam match to PF02618.7 ADC_lyase; 4-amino-4-deoxychorismate lyase 783465..784418 Campylobacter lari RM2100 7410400 YP_002575399.1 CDS ftsK NC_012039.1 784419 787193 R contains alternative start; Pfam matches to PF01580.9 FtsK_SpoIIIE, and to PF09397.1 Ftsk_gamma; DNA translocase FtsK complement(784419..787193) Campylobacter lari RM2100 7410401 YP_002575400.1 CDS Cla_0822 NC_012039.1 787297 789531 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; lagellar hook-associated protein FlgL complement(787297..789531) Campylobacter lari RM2100 7410402 YP_002575401.1 CDS Cla_0824 NC_012039.1 789967 791145 D Pfam match to PF00589.13 Phage_integrase; site-specific recombinase, phage integrase 789967..791145 Campylobacter lari RM2100 7410404 YP_002575402.1 CDS Cla_0825 NC_012039.1 791138 791323 R hypothetical protein complement(791138..791323) Campylobacter lari RM2100 7410405 YP_002575403.1 CDS Cla_0826 NC_012039.1 791325 791681 R hypothetical protein complement(791325..791681) Campylobacter lari RM2100 7410406 YP_002575404.1 CDS Cla_0827 NC_012039.1 791697 791903 R hypothetical protein complement(791697..791903) Campylobacter lari RM2100 7410407 YP_002575405.1 CDS Cla_0828 NC_012039.1 791887 792261 R hypothetical protein complement(791887..792261) Campylobacter lari RM2100 7410408 YP_002575406.1 CDS Cla_0829 NC_012039.1 792258 793124 R hypothetical protein complement(792258..793124) Campylobacter lari RM2100 7410409 YP_002575407.1 CDS Cla_0830 NC_012039.1 793145 793303 R hypothetical protein complement(793145..793303) Campylobacter lari RM2100 7410410 YP_002575408.1 CDS Cla_0831 NC_012039.1 793306 793485 R hypothetical protein complement(793306..793485) Campylobacter lari RM2100 7410411 YP_002575409.1 CDS Cla_0832 NC_012039.1 793834 794133 R hypothetical protein complement(793834..794133) Campylobacter lari RM2100 7410412 YP_002575410.1 CDS Cla_0833 NC_012039.1 794134 794412 R hypothetical protein complement(794134..794412) Campylobacter lari RM2100 7410413 YP_002575411.1 CDS Cla_0834 NC_012039.1 794602 794985 D Pfam match to PF07022.4 Phage_CI_repr; transcriptional regulator 794602..794985 Campylobacter lari RM2100 7410414 YP_002575412.1 CDS Cla_0835 NC_012039.1 794988 795293 D hypothetical protein 794988..795293 Campylobacter lari RM2100 7410415 YP_002575413.1 CDS Cla_0836 NC_012039.1 795294 796673 D Pfam match to PF00929.15 Exonuc_X-T; exonuclease 795294..796673 Campylobacter lari RM2100 7410416 YP_002575414.1 CDS Cla_0837 NC_012039.1 796828 797871 D Pfam match to PF04313.5 HSDR_N; hypothetical protein 796828..797871 Campylobacter lari RM2100 7410417 YP_002575415.1 CDS Cla_0838 NC_012039.1 797896 799719 D Pfam match to PF07693.5 KAP_NTPase; KAP family 797896..799719 Campylobacter lari RM2100 7410418 YP_002575416.1 CDS Cla_0839 NC_012039.1 799700 799969 R hypothetical protein complement(799700..799969) Campylobacter lari RM2100 7410419 YP_002575417.1 CDS Cla_0840 NC_012039.1 799836 800225 R hypothetical protein complement(799836..800225) Campylobacter lari RM2100 7410420 YP_002575418.1 CDS Cla_0841 NC_012039.1 800455 800922 R hypothetical protein complement(800455..800922) Campylobacter lari RM2100 7410421 YP_002575419.1 CDS Cla_0842 NC_012039.1 800923 802221 R hypothetical protein complement(800923..802221) Campylobacter lari RM2100 7410422 YP_002575420.1 CDS Cla_0843 NC_012039.1 802222 802593 R Pfam match to PF07087.2 DUF1353; hypothetical protein complement(802222..802593) Campylobacter lari RM2100 7410423 YP_002575421.1 CDS Cla_0844 NC_012039.1 802574 803071 R hypothetical protein complement(802574..803071) Campylobacter lari RM2100 7410424 YP_002575422.1 CDS Cla_0845 NC_012039.1 803073 803708 R hypothetical protein complement(803073..803708) Campylobacter lari RM2100 7410425 YP_002575423.1 CDS Cla_0846 NC_012039.1 803718 804167 R hypothetical protein complement(803718..804167) Campylobacter lari RM2100 7410426 YP_002575424.1 CDS Cla_0847 NC_012039.1 804169 805761 R hypothetical protein complement(804169..805761) Campylobacter lari RM2100 7410427 YP_002575425.1 CDS Cla_0848 NC_012039.1 805761 806372 R hypothetical protein complement(805761..806372) Campylobacter lari RM2100 7410428 YP_002575426.1 CDS Cla_0849 NC_012039.1 806359 806685 R hypothetical protein complement(806359..806685) Campylobacter lari RM2100 7410429 YP_002575427.1 CDS Cla_0850 NC_012039.1 806695 807132 R hypothetical protein complement(806695..807132) Campylobacter lari RM2100 7410430 YP_002575428.1 CDS Cla_0851 NC_012039.1 807129 807371 R hypothetical protein complement(807129..807371) Campylobacter lari RM2100 7410431 YP_002575429.1 CDS Cla_0852 NC_012039.1 807382 808542 R Pfam match to PF05065.4 Phage_capsid; major capsid protein, HK97 family complement(807382..808542) Campylobacter lari RM2100 7410432 YP_002575430.1 CDS Cla_0853 NC_012039.1 808554 809105 R hypothetical protein complement(808554..809105) Campylobacter lari RM2100 7410433 YP_002575431.1 CDS Cla_0854 NC_012039.1 809175 810044 R hypothetical protein complement(809175..810044) Campylobacter lari RM2100 7410434 YP_002575432.1 CDS Cla_0855 NC_012039.1 810041 815530 R hypothetical protein complement(810041..815530) Campylobacter lari RM2100 7410435 YP_002575433.1 CDS Cla_0856 NC_012039.1 815554 815895 R hypothetical protein complement(815554..815895) Campylobacter lari RM2100 7410436 YP_002575434.1 CDS Cla_0857 NC_012039.1 815902 816120 R hypothetical protein complement(815902..816120) Campylobacter lari RM2100 7410437 YP_002575435.1 CDS Cla_0858 NC_012039.1 816201 816563 R hypothetical protein complement(816201..816563) Campylobacter lari RM2100 7410438 YP_002575436.1 CDS Cla_0859 NC_012039.1 816560 817534 R hypothetical protein complement(816560..817534) Campylobacter lari RM2100 7410439 YP_002575437.1 CDS Cla_0860 NC_012039.1 817598 817948 R hypothetical protein complement(817598..817948) Campylobacter lari RM2100 7410440 YP_002575438.1 CDS Cla_0861 NC_012039.1 817949 818473 R phage protein, HK97 gp10 family complement(817949..818473) Campylobacter lari RM2100 7410441 YP_002575439.1 CDS Cla_0862 NC_012039.1 818461 819630 R Pfam match to PF04860.3 Phage_portal; phage portal protein, HK97 family complement(818461..819630) Campylobacter lari RM2100 7410442 YP_002575440.1 CDS Cla_0863 NC_012039.1 819709 820440 R Pfam match to PF09669.1 Phage_pRha; phage protein complement(819709..820440) Campylobacter lari RM2100 7410443 YP_002575441.1 CDS Cla_0864 NC_012039.1 820831 821631 D hypothetical protein 820831..821631 Campylobacter lari RM2100 7410444 YP_002575442.1 CDS Cla_0865 NC_012039.1 821817 821993 D hypothetical protein 821817..821993 Campylobacter lari RM2100 7410445 YP_002575443.1 CDS Cla_0866 NC_012039.1 821941 822408 D hypothetical protein 821941..822408 Campylobacter lari RM2100 7410446 YP_002575444.1 CDS Cla_0867 NC_012039.1 822480 824111 R Pfam match to PF03354.6 Terminase_1; phage terminase, large subunit complement(822480..824111) Campylobacter lari RM2100 7410447 YP_002575445.1 CDS Cla_0868 NC_012039.1 824104 824739 R phage terminase, small subunit complement(824104..824739) Campylobacter lari RM2100 7410448 YP_002575446.1 CDS Cla_0869 NC_012039.1 824983 825333 R Pfam match to PF01844.14 HNH; HNH endonuclease domain protein complement(824983..825333) Campylobacter lari RM2100 7410449 YP_002575447.1 CDS Cla_0870 NC_012039.1 825330 825608 R hypothetical protein complement(825330..825608) Campylobacter lari RM2100 7410450 YP_002575448.1 CDS Cla_0871 NC_012039.1 827360 827611 R hypothetical protein complement(827360..827611) Campylobacter lari RM2100 7410451 YP_002575449.1 CDS Cla_0872 NC_012039.1 828146 829066 D Pfam match to PF08279.3 HTH_11; transcriptional regulator 828146..829066 Campylobacter lari RM2100 7410452 YP_002575450.1 CDS Cla_0873 NC_012039.1 829071 830465 R hypothetical protein complement(829071..830465) Campylobacter lari RM2100 7410453 YP_002575451.1 CDS Cla_0874 NC_012039.1 830571 831119 D hypothetical protein 830571..831119 Campylobacter lari RM2100 7410454 YP_002575452.1 CDS Cla_0875 NC_012039.1 831116 831883 D Pfam match to PF04371.6 PAD_porph; peptidyl-arginine deiminase 831116..831883 Campylobacter lari RM2100 7410455 YP_002575453.1 CDS Cla_0876 NC_012039.1 831908 832528 D hypothetical protein 831908..832528 Campylobacter lari RM2100 7410456 YP_002575454.1 CDS Cla_0877 NC_012039.1 832604 834526 D Pfam match to PF00004.20 AAA; ATPase AAA 832604..834526 Campylobacter lari RM2100 7410457 YP_002575455.1 CDS Cla_0878 NC_012039.1 834540 835232 D hypothetical protein 834540..835232 Campylobacter lari RM2100 7410458 YP_002575456.1 CDS Cla_0879 NC_012039.1 835224 836603 R hypothetical protein complement(835224..836603) Campylobacter lari RM2100 7410459 YP_002575457.1 CDS Cla_0880 NC_012039.1 836545 838461 R Pfam match to PF07728.5 AAA_5; ATPase AAA complement(836545..838461) Campylobacter lari RM2100 7410460 YP_002575458.1 CDS Cla_0881 NC_012039.1 838658 839221 D hypothetical protein 838658..839221 Campylobacter lari RM2100 7410461 YP_002575459.1 CDS Cla_0883 NC_012039.1 840976 841521 D Pfam matches to PF07656.2 KWG, and to PF07656.2 KWG; hypothetical protein 840976..841521 Campylobacter lari RM2100 7410463 YP_002575460.1 CDS Cla_0884 NC_012039.1 841831 842163 R hypothetical protein complement(841831..842163) Campylobacter lari RM2100 7410464 YP_002575461.1 CDS Cla_0885 NC_012039.1 842150 843319 R hypothetical protein complement(842150..843319) Campylobacter lari RM2100 7410465 YP_002575462.1 CDS Cla_0886 NC_012039.1 843322 843672 R hypothetical protein complement(843322..843672) Campylobacter lari RM2100 7410466 YP_002575463.1 CDS Cla_0887 NC_012039.1 843682 845229 R Pfam match to PF07656.2 KWG; hypothetical protein complement(843682..845229) Campylobacter lari RM2100 7410467 YP_002575464.1 CDS Cla_0888 NC_012039.1 845641 847770 R Pfam match to PF03235.5 DUF262; hypothetical protein complement(845641..847770) Campylobacter lari RM2100 7410468 YP_002575465.1 CDS Cla_0889 NC_012039.1 847782 849137 R Pfam match to PF03235.5 DUF262; hypothetical protein complement(847782..849137) Campylobacter lari RM2100 7410469 YP_002575466.1 CDS Cla_0890 NC_012039.1 849165 849992 R Pfam match to PF02146.8 SIR2; NAD-dependent protein deacetylase (SIR2 family) complement(849165..849992) Campylobacter lari RM2100 7410470 YP_002575467.1 CDS Cla_0891 NC_012039.1 850002 850430 R hypothetical protein complement(850002..850430) Campylobacter lari RM2100 7410471 YP_002575468.1 CDS dnaE NC_012039.1 850498 854091 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(850498..854091) Campylobacter lari RM2100 7410472 YP_002575469.1 CDS Cla_0893 NC_012039.1 854177 854428 R hypothetical protein complement(854177..854428) Campylobacter lari RM2100 7410473 YP_002575470.1 CDS thiJ NC_012039.1 854458 855024 R Pfam match to PF01965.15 DJ-1_PfpI; 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein complement(854458..855024) Campylobacter lari RM2100 7410474 YP_002575471.1 CDS Cla_0895 NC_012039.1 855035 855907 R Pfam match to PF00795.13 CN_hydrolase; hydrolase, carbon-nitrogen family complement(855035..855907) Campylobacter lari RM2100 7410475 YP_002575472.1 CDS Cla_0896 NC_012039.1 855876 856790 R Pfam match to PF01545.12 Cation_efflux; cation efflux family protein complement(855876..856790) Campylobacter lari RM2100 7410476 YP_002575473.1 CDS Cla_0897 NC_012039.1 856787 857764 R Pfam match to PF04371.6 PAD_porph; peptidyl-arginine deiminase complement(856787..857764) Campylobacter lari RM2100 7410477 YP_002575474.1 CDS Cla_0898 NC_012039.1 857821 858102 R hypothetical protein complement(857821..858102) Campylobacter lari RM2100 7410478 YP_002575475.1 CDS Cla_0899 NC_012039.1 858102 858701 R Pfam match to PF00753.18 Lactamase_B; hydrolase (metallo-beta-lactamase) complement(858102..858701) Campylobacter lari RM2100 7410479 YP_002575476.1 CDS nadE NC_012039.1 858763 859503 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 858763..859503 Campylobacter lari RM2100 7410480 YP_002575477.1 CDS lpxK NC_012039.1 859490 860428 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 859490..860428 Campylobacter lari RM2100 7410481 YP_002575478.1 CDS thrC NC_012039.1 860403 861812 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 860403..861812 Campylobacter lari RM2100 7410482 YP_002575479.1 CDS kdsB NC_012039.1 861809 862534 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 861809..862534 Campylobacter lari RM2100 7410483 YP_002575480.1 CDS glnH NC_012039.1 862531 863295 D Pfam match to PF00497.11 SBP_bac_3; glutamine-binding periplasmic protein 862531..863295 Campylobacter lari RM2100 7410484 YP_002575481.1 CDS glnP NC_012039.1 863292 864074 R Pfam match to PF00528.13 BPD_transp_1; amino acid ABC transporter permease complement(863292..864074) Campylobacter lari RM2100 7410485 YP_002575482.1 CDS dsbD NC_012039.1 864256 865947 D Pfam match to PF02683.6 DsbD; thiol:disulfide interchange protein DsbD 864256..865947 Campylobacter lari RM2100 7410486 YP_002575483.1 CDS Cla_0907 NC_012039.1 865944 866600 D Pfam match to PF03473.8 MOSC; hypothetical protein 865944..866600 Campylobacter lari RM2100 7410487 YP_002575484.1 CDS ndh NC_012039.1 866593 867768 R Pfam match to PF00070.18 Pyr_redox; NADH dehydrogenase complement(866593..867768) Campylobacter lari RM2100 7410488 YP_002575485.1 CDS Cla_0909 NC_012039.1 867871 869235 D Pfam match to PF00209.9 SNF; sodium-dependent transporter (SNF family) 867871..869235 Campylobacter lari RM2100 7410489 YP_002575486.1 CDS Cla_0911 NC_012039.1 870076 871026 R Pfam match to PF00691.11 OmpA; chemotaxis protein MotB complement(870076..871026) Campylobacter lari RM2100 7410491 YP_002575487.1 CDS Cla_0912 NC_012039.1 871013 872344 R hypothetical protein complement(871013..872344) Campylobacter lari RM2100 7410492 YP_002575488.1 CDS fba NC_012039.1 872420 873484 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(872420..873484) Campylobacter lari RM2100 7410493 YP_002575489.1 CDS peb4 NC_012039.1 873484 874299 R Pfam match to PF00639.12 Rotamase; hypothetical protein complement(873484..874299) Campylobacter lari RM2100 7410494 YP_002575490.1 CDS nth NC_012039.1 874379 875005 D Pfam match to PF00730.16 HhH-GPD; endonuclease III 874379..875005 Campylobacter lari RM2100 7410495 YP_002575491.1 CDS gltS NC_012039.1 875029 876237 R Pfam match to PF03616.5 Glt_symporter; sodium/glutamate symport carrier protein complement(875029..876237) Campylobacter lari RM2100 7410496 YP_002575492.1 CDS Cla_0917 NC_012039.1 876353 877693 R Pfam match to PF02321.9 OEP; outer membrane efflux protein complement(876353..877693) Campylobacter lari RM2100 7410497 YP_002575493.1 CDS Cla_0918 NC_012039.1 877695 879626 R Pfam matches to PF00005.18 ABC_tran, and to PF02687.12 FtsX; ABC transporter ATP-binding protein complement(877695..879626) Campylobacter lari RM2100 7410498 YP_002575494.1 CDS Cla_0919 NC_012039.1 879623 880756 R Pfam match to PF00529.11 HlyD; AcrA/AcrE family efflux protein complement(879623..880756) Campylobacter lari RM2100 7410499 YP_002575495.1 CDS rdxA NC_012039.1 880884 881492 D Pfam match to PF00881.15 Nitroreductase; nitroreductase 880884..881492 Campylobacter lari RM2100 7410500 YP_002575496.1 CDS aas NC_012039.1 881562 885074 D Pfam matches to PF07690.7 MFS_1, and to PF01553.12 Acyltransferase; 2-acyl-glycerophospho-ethanolamine acyltransferase 881562..885074 Campylobacter lari RM2100 7410501 YP_002575497.1 CDS Cla_0922 NC_012039.1 885339 886283 D Pfam match to PF00070.18 Pyr_redox; pyridine nucleotide-disulfide oxidoreductase 885339..886283 Campylobacter lari RM2100 7410502 YP_002575498.1 CDS Cla_0923 NC_012039.1 886277 886969 D Pfam match to PF05175.5 MTS; methylase 886277..886969 Campylobacter lari RM2100 7410503 YP_002575499.1 CDS Cla_0924 NC_012039.1 886962 887330 D Pfam match to PF03692.6 UPF0153; hypothetical protein 886962..887330 Campylobacter lari RM2100 7410504 YP_002575500.1 CDS Cla_0925 NC_012039.1 887306 888541 D ATP-dependent nuclease 887306..888541 Campylobacter lari RM2100 7410505 YP_002575501.1 CDS Cla_0926 NC_012039.1 888526 889128 D Pfam match to PF00218.12 IGPS; indole-3-glycerol phosphate synthase 888526..889128 Campylobacter lari RM2100 7410506 YP_002575502.1 CDS Cla_0927 NC_012039.1 889128 889616 D Pfam match to PF01230.14 HIT; HIT family hydrolase 889128..889616 Campylobacter lari RM2100 7410507 YP_002575503.1 CDS Cla_0928 NC_012039.1 889609 890592 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 889609..890592 Campylobacter lari RM2100 7410508 YP_002575504.1 CDS pitB NC_012039.1 890587 892107 R Pfam match to PF01384.11 PHO4; phosphate-transport permease PitB complement(890587..892107) Campylobacter lari RM2100 7410509 YP_002575505.1 CDS pdxA NC_012039.1 892154 893254 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(892154..893254) Campylobacter lari RM2100 7410510 YP_002575506.1 CDS pdxJ NC_012039.1 893251 894018 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(893251..894018) Campylobacter lari RM2100 7410511 YP_002575507.1 CDS Cla_0932 NC_012039.1 894074 895039 D Pfam match to PF02541.7 Ppx-GppA; Ppx/GppA phosphatase 894074..895039 Campylobacter lari RM2100 7410512 YP_002575508.1 CDS Cla_0933 NC_012039.1 895050 895493 D Pfam match to PF09424.1 YqeY; GatB/YqeY family 895050..895493 Campylobacter lari RM2100 7410513 YP_002575509.1 CDS Cla_0934 NC_012039.1 895490 896143 D Pfam match to PF01223.14 Endonuclease_NS; DNA/RNA non-specific endonuclease 895490..896143 Campylobacter lari RM2100 7410514 YP_002575510.1 CDS dnaK NC_012039.1 896177 898045 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(896177..898045) Campylobacter lari RM2100 7410515 YP_002575511.1 CDS grpE NC_012039.1 898067 898576 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(898067..898576) Campylobacter lari RM2100 7410516 YP_002575512.1 CDS hrcA NC_012039.1 898573 899355 R Acts as a negative regulator of the grpE-dnaK-dnaJ and groELS class I heat shock operons by preventing heat-shock induction; heat-inducible transcription repressor complement(898573..899355) Campylobacter lari RM2100 7410517 YP_002575513.1 CDS Cla_0938 NC_012039.1 899718 900347 R hypothetical protein complement(899718..900347) Campylobacter lari RM2100 7410518 YP_002575514.1 CDS Cla_0939 NC_012039.1 900344 900574 R hypothetical protein complement(900344..900574) Campylobacter lari RM2100 7410519 YP_002575515.1 CDS Cla_0940 NC_012039.1 900558 901610 R hypothetical protein complement(900558..901610) Campylobacter lari RM2100 7410520 YP_002575516.1 CDS flhA NC_012039.1 901620 903779 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(901620..903779) Campylobacter lari RM2100 7410521 YP_002575517.1 CDS Cla_0942 NC_012039.1 903772 904176 R Pfam match to PF02082.11 Rrf2; BadM/Rrf2 family transcriptional regulator complement(903772..904176) Campylobacter lari RM2100 7410522 YP_002575518.1 CDS rpsO NC_012039.1 904352 904624 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 904352..904624 Campylobacter lari RM2100 7410523 YP_002575519.1 CDS Cla_0944 NC_012039.1 904813 905706 R Pfam match to PF01189.8 Nol1_Nop2_Fmu; NOL1/NOP2/sun family protein complement(904813..905706) Campylobacter lari RM2100 7410524 YP_002575520.1 CDS Cla_0945 NC_012039.1 905693 906079 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(905693..906079) Campylobacter lari RM2100 7410525 YP_002575521.1 CDS dprA NC_012039.1 906076 906843 R Pfam match to PF02481.6 SMF; DNA processing protein A complement(906076..906843) Campylobacter lari RM2100 7410526 YP_002575522.1 CDS Cla_0947 NC_012039.1 906830 907897 R Pfam match to PF04748.4 Polysacc_deac_2; polysaccharide deacetylase complement(906830..907897) Campylobacter lari RM2100 7410527 YP_002575523.1 CDS ilvC NC_012039.1 907899 908921 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(907899..908921) Campylobacter lari RM2100 7410528 YP_002575524.1 CDS rnr NC_012039.1 909031 910971 D Pfam match to PF00773.10 RNB; ribonuclease R 909031..910971 Campylobacter lari RM2100 7410529 YP_002575525.1 CDS Cla_0950 NC_012039.1 910964 911929 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 910964..911929 Campylobacter lari RM2100 7410530 YP_002575526.1 CDS rpsF NC_012039.1 912021 912395 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 912021..912395 Campylobacter lari RM2100 7410531 YP_002575527.1 CDS ssb NC_012039.1 912399 912926 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 912399..912926 Campylobacter lari RM2100 7410532 YP_002575528.1 CDS rpsR NC_012039.1 912937 913197 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 912937..913197 Campylobacter lari RM2100 7410533 YP_002575529.1 CDS Cla_0954 NC_012039.1 913249 913890 D Pfam match to PF01914.8 MarC; integral membrane protein, MarC family 913249..913890 Campylobacter lari RM2100 7410534 YP_002575530.1 CDS Cla_0955 NC_012039.1 913872 914294 R periplasmic protein complement(913872..914294) Campylobacter lari RM2100 7410535 YP_002575531.1 CDS Cla_0956 NC_012039.1 914291 915019 R Pfam match to PF07963.3 N_methyl; hypothetical protein complement(914291..915019) Campylobacter lari RM2100 7410536 YP_002575532.1 CDS Cla_0957 NC_012039.1 915003 915299 R hypothetical protein complement(915003..915299) Campylobacter lari RM2100 7410537 YP_002575533.1 CDS proC NC_012039.1 915296 915991 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(915296..915991) Campylobacter lari RM2100 7410538 YP_002575534.1 CDS Cla_0959 NC_012039.1 916024 916419 R binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW complement(916024..916419) Campylobacter lari RM2100 7410539 YP_002575535.1 CDS Cla_0960 NC_012039.1 916596 917252 D hypothetical protein 916596..917252 Campylobacter lari RM2100 7410540 YP_002575536.1 CDS lon NC_012039.1 917252 919630 D Pfam matches to PF00004.20 AAA, and to PF05362.4 Lon_C; DNA-binding, ATP-dependent protease La 917252..919630 Campylobacter lari RM2100 7410541 YP_002575537.1 CDS Cla_0962 NC_012039.1 919642 921018 R Pfam match to PF00015.12 MCPsignal; MCP-domain signal transduction protein complement(919642..921018) Campylobacter lari RM2100 7410542 YP_002575538.1 CDS Cla_0963 NC_012039.1 921029 921520 R Pfam match to PF08447.2 PAS_3; PAS domain signal transduction sensor protein complement(921029..921520) Campylobacter lari RM2100 7410543 YP_002575539.1 CDS Cla_0964 NC_012039.1 921603 922094 R Pfam match to PF08447.2 PAS_3; PAS domain signal transduction sensor protein complement(921603..922094) Campylobacter lari RM2100 7410544 YP_002575540.1 CDS ilvA NC_012039.1 922138 923349 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(922138..923349) Campylobacter lari RM2100 7410545 YP_002575541.1 CDS Cla_0966 NC_012039.1 923352 923741 R Pfam match to PF02629.10 CoA_binding; CoA-binding domain protein complement(923352..923741) Campylobacter lari RM2100 7410546 YP_002575542.1 CDS Cla_0967 NC_012039.1 923779 924951 R Pfam match to PF07690.7 MFS_1; major facilitator superfamily transporter complement(923779..924951) Campylobacter lari RM2100 7410547 YP_002575543.1 CDS trmA NC_012039.1 925440 926480 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(925440..926480) Campylobacter lari RM2100 7410549 YP_002575544.1 CDS Cla_0970 NC_012039.1 926481 928193 R Pfam match to PF03553.5 Na_H_antiporter; Na+/H+ antiporter family protein complement(926481..928193) Campylobacter lari RM2100 7410550 YP_002575545.1 CDS Cla_0971 NC_012039.1 928210 928956 R Pfam match to PF00106.16 adh_short; oxidoreductase, short chain dehydrogenase/reductase complement(928210..928956) Campylobacter lari RM2100 7410551 YP_002575546.1 CDS Cla_0972 NC_012039.1 928953 930200 R Pfam match to PF00023.21 Ank; ankyrin repeat domain protein complement(928953..930200) Campylobacter lari RM2100 7410552 YP_002575547.1 CDS ogt NC_012039.1 930310 930762 D Pfam match to PF01035.11 DNA_binding_1; methylated-DNA--protein-cysteine methyltransferase 930310..930762 Campylobacter lari RM2100 7410553 YP_002575548.1 CDS Cla_0974 NC_012039.1 930764 931642 D Pfam match to PF00892.11 DUF6; MadN family (DUF6 domain protein) 930764..931642 Campylobacter lari RM2100 7410554 YP_002575549.1 CDS truA NC_012039.1 931596 932330 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(931596..932330) Campylobacter lari RM2100 7410555 YP_002575550.1 CDS Cla_0976 NC_012039.1 932331 933356 R Pfam match to PF03739.5 YjgP_YjgQ; permease, YjgP/YjgQ family complement(932331..933356) Campylobacter lari RM2100 7410556 YP_002575551.1 CDS Cla_0977 NC_012039.1 933353 934099 R Pfam match to PF06750.4 DiS_P_DiS; peptidase, A24 family complement(933353..934099) Campylobacter lari RM2100 7410557 YP_002575552.1 CDS uppS NC_012039.1 934096 934764 R Pfam match to PF01255.10 Prenyltransf; UDP diphosphate synthetase complement(934096..934764) Campylobacter lari RM2100 7410558 YP_002575553.1 CDS Cla_0979 NC_012039.1 934766 935389 R hypothetical protein complement(934766..935389) Campylobacter lari RM2100 7410559 YP_002575554.1 CDS dfp NC_012039.1 935383 936540 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(935383..936540) Campylobacter lari RM2100 7410560 YP_002575555.1 CDS glmU NC_012039.1 936537 937826 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(936537..937826) Campylobacter lari RM2100 7410561 YP_002575556.1 CDS fliP NC_012039.1 937964 938698 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 937964..938698 Campylobacter lari RM2100 7410562 YP_002575557.1 CDS Cla_0983 NC_012039.1 938708 939619 D Pfam match to PF03547.9 Mem_trans; hypothetical protein 938708..939619 Campylobacter lari RM2100 7409822 YP_002575558.1 CDS pabB NC_012039.1 939628 941376 D Pfam match to PF00425.9 Chorismate_bind; para-aminobenzoate synthase component I, ADC synthase 939628..941376 Campylobacter lari RM2100 7410719 YP_002575559.1 CDS pabA NC_012039.1 941373 941945 D Pfam match to PF00117.19 GATase; para-aminobenzoate synthase component II, glutamine amidotransferase 941373..941945 Campylobacter lari RM2100 7410720 YP_002575560.1 CDS cmeD NC_012039.1 941981 943237 D Pfam matches to PF02321.9 OEP, and to PF02321.9 OEP; outer membrane component of efflux system 941981..943237 Campylobacter lari RM2100 7410721 YP_002575561.1 CDS cmeE NC_012039.1 943234 943974 D membrane fusion component of efflux system 943234..943974 Campylobacter lari RM2100 7410722 YP_002575562.1 CDS cmeF NC_012039.1 943977 946991 D Pfam match to PF00873.10 ACR_tran; integral membrane component of efflux system 943977..946991 Campylobacter lari RM2100 7410723 YP_002575563.1 CDS Cla_0989 NC_012039.1 946992 947321 R Pfam match to PF03960.6 ArsC; ArsC family transcriptional regulator complement(946992..947321) Campylobacter lari RM2100 7410724 YP_002575564.1 CDS aroG NC_012039.1 947315 948655 R Pfam match to PF01474.7 DAHP_synth_2; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase complement(947315..948655) Campylobacter lari RM2100 7410725 YP_002575565.1 CDS Cla_0991 NC_012039.1 948708 949061 R hypothetical protein complement(948708..949061) Campylobacter lari RM2100 7410726 YP_002575566.1 CDS rplS NC_012039.1 949064 949420 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(949064..949420) Campylobacter lari RM2100 7410727 YP_002575567.1 CDS trmD NC_012039.1 949432 950136 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(949432..950136) Campylobacter lari RM2100 7410728 YP_002575568.1 CDS rimM NC_012039.1 950133 950609 R Pfam match to PF05239.7 PRC; 16S rRNA processing protein complement(950133..950609) Campylobacter lari RM2100 7410729 YP_002575569.1 CDS Cla_0995 NC_012039.1 950647 950892 R hypothetical protein complement(950647..950892) Campylobacter lari RM2100 7410730 YP_002575570.1 CDS rpsP NC_012039.1 950895 951122 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(950895..951122) Campylobacter lari RM2100 7410731 YP_002575571.1 CDS ffh NC_012039.1 951194 952531 R Pfam matches to PF02881.10 SRP54_N, and to PF00448.13 SRP54; signal recognition particle protein complement(951194..952531) Campylobacter lari RM2100 7410732 YP_002575572.1 CDS Cla_0998 NC_012039.1 952595 953347 R Pfam match to PF00849.13 PseudoU_synth_2; ribosomal large subunit pseudouridine synthase complement(952595..953347) Campylobacter lari RM2100 7410733 YP_002575573.1 CDS kdtA NC_012039.1 953328 954512 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(953328..954512) Campylobacter lari RM2100 7410734 YP_002575574.1 CDS Cla_1000 NC_012039.1 954509 955228 R Pfam match to PF02591.6 DUF164; hypothetical protein complement(954509..955228) Campylobacter lari RM2100 7410735 YP_002575575.1 CDS Cla_1001 NC_012039.1 955240 955965 R Pfam match to PF01784.9 NIF3; hypothetical protein complement(955240..955965) Campylobacter lari RM2100 7410736 YP_002575576.1 CDS glyQ NC_012039.1 955955 956815 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(955955..956815) Campylobacter lari RM2100 7410737 YP_002575577.1 CDS Cla_1003 NC_012039.1 956812 957318 R hypothetical protein complement(956812..957318) Campylobacter lari RM2100 7410738 YP_002575578.1 CDS purE NC_012039.1 957328 957822 R Pfam match to PF00731.11 AIRC; phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(957328..957822) Campylobacter lari RM2100 7410739 YP_002575579.1 CDS Cla_1005 NC_012039.1 957819 959075 R Pfam match to PF01136.10 Peptidase_U32; peptidase U32 complement(957819..959075) Campylobacter lari RM2100 7410740 YP_002575580.1 CDS Cla_1006 NC_012039.1 959072 959779 R hypothetical protein complement(959072..959779) Campylobacter lari RM2100 7410741 YP_002575581.1 CDS glnA NC_012039.1 959982 961412 D Pfam matches to PF03951.10 Gln-synt_N, and to PF00120.15 Gln-synt_C; glutamine synthetase 959982..961412 Campylobacter lari RM2100 7410742 YP_002575582.1 CDS cca NC_012039.1 961441 963375 R Pfam matches to PF01743.11 PolyA_pol, and to PF00551.10 Formyl_trans_N; tRNA nucleotidyltransferase/formyltetrahydrofolate deformylase complement(961441..963375) Campylobacter lari RM2100 7410743 YP_002575583.1 CDS Cla_1009 NC_012039.1 963344 963769 R hypothetical protein complement(963344..963769) Campylobacter lari RM2100 7410744 YP_002575584.1 CDS Cla_1010 NC_012039.1 963766 964011 R hypothetical protein complement(963766..964011) Campylobacter lari RM2100 7410745 YP_002575585.1 CDS Cla_1011 NC_012039.1 964077 965249 R Pfam match to PF07690.7 MFS_1; major facilitator superfamily transporter complement(964077..965249) Campylobacter lari RM2100 7410746 YP_002575586.1 CDS Cla_1012 NC_012039.1 965252 965419 R hypothetical protein complement(965252..965419) Campylobacter lari RM2100 7410747 YP_002575587.1 CDS napD NC_012039.1 965422 965757 R periplasmic nitrate reductase assembly protein complement(965422..965757) Campylobacter lari RM2100 7410748 YP_002575588.1 CDS napL NC_012039.1 965744 966670 R periplasmic protein NapL complement(965744..966670) Campylobacter lari RM2100 7410749 YP_002575589.1 CDS napB NC_012039.1 966675 967193 R Pfam match to PF03892.5 NapB; periplasmic nitrate reductase, small subunit, cytochrome c-type protein complement(966675..967193) Campylobacter lari RM2100 7410750 YP_002575590.1 CDS napH NC_012039.1 967183 967974 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component complement(967183..967974) Campylobacter lari RM2100 7410751 YP_002575591.1 CDS napG NC_012039.1 967971 968720 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(967971..968720) Campylobacter lari RM2100 7410752 YP_002575592.1 CDS napA NC_012039.1 968723 971497 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(968723..971497) Campylobacter lari RM2100 7410753 YP_002575593.1 CDS flgG NC_012039.1 971665 972459 R makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG complement(971665..972459) Campylobacter lari RM2100 7410754 YP_002575594.1 CDS flgG2 NC_012039.1 972477 973286 R Pfam match to PF00460.11 Flg_bb_rod; flagellar distal rod protein FlgG complement(972477..973286) Campylobacter lari RM2100 7410755 YP_002575595.1 CDS rpoD NC_012039.1 973422 975299 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 973422..975299 Campylobacter lari RM2100 7410756 YP_002575596.1 CDS ppk NC_012039.1 975320 977413 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(975320..977413) Campylobacter lari RM2100 7410757 YP_002575597.1 CDS nrfH NC_012039.1 977642 978136 D cytochrome c nitrite reductase, small subunit NrfH 977642..978136 Campylobacter lari RM2100 7410758 YP_002575598.1 CDS nrfA NC_012039.1 978153 979970 D Pfam match to PF02335.6 Cytochrom_C552; cytochrome c nitrite reductase, catalytic subunit NrfA 978153..979970 Campylobacter lari RM2100 7410759 YP_002575599.1 CDS thiC NC_012039.1 979998 981299 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(979998..981299) Campylobacter lari RM2100 7410760 YP_002575600.1 CDS dnaQ NC_012039.1 981486 982250 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(981486..982250) Campylobacter lari RM2100 7410761 YP_002575601.1 CDS rpe NC_012039.1 982247 982894 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(982247..982894) Campylobacter lari RM2100 7410762 YP_002575602.1 CDS rpmB NC_012039.1 983037 983231 D required for 70S ribosome assembly; 50S ribosomal protein L28 983037..983231 Campylobacter lari RM2100 7410763 YP_002575603.1 CDS Cla_1030 NC_012039.1 983257 984384 D Pfam matches to PF07885.7 Ion_trans_2, and to PF02254.9 TrkA_N; hypothetical protein 983257..984384 Campylobacter lari RM2100 7410764 YP_002575604.1 CDS Cla_1031 NC_012039.1 984432 984647 D Pfam match to PF04325.4 DUF465; hypothetical protein 984432..984647 Campylobacter lari RM2100 7410765 YP_002575605.1 CDS Cla_1032 NC_012039.1 984681 985808 D Pfam match to PF00015.12 MCPsignal; MCP-domain signal transduction protein 984681..985808 Campylobacter lari RM2100 7410766 YP_002575606.1 CDS Cla_1033 NC_012039.1 985819 986388 R Pfam match to PF00293.19 NUDIX; NUDIX domain protein complement(985819..986388) Campylobacter lari RM2100 7410767 YP_002575607.1 CDS groEL NC_012039.1 986509 988146 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL complement(986509..988146) Campylobacter lari RM2100 7410768 YP_002575608.1 CDS groES NC_012039.1 988160 988420 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(988160..988420) Campylobacter lari RM2100 7410769 YP_002575609.1 CDS Cla_1036 NC_012039.1 988583 991126 D hypothetical protein 988583..991126 Campylobacter lari RM2100 7410770 YP_002575610.1 CDS Cla_1037 NC_012039.1 991161 991679 R Pfam match to PF02482.10 Ribosomal_S30AE; sigma 54 modulation protein/ribosomal protein S30EA complement(991161..991679) Campylobacter lari RM2100 7410771 YP_002575611.1 CDS Cla_1038 NC_012039.1 991760 992440 R Pfam match to PF00730.16 HhH-GPD; HhH-GPD family protein complement(991760..992440) Campylobacter lari RM2100 7410772 YP_002575612.1 CDS mfd NC_012039.1 992437 995376 R Pfam matches to PF02559.7 CarD_TRCF, and to PF00270.20 DEAD; transcription-repair coupling factor complement(992437..995376) Campylobacter lari RM2100 7410773 YP_002575613.1 CDS Cla_1040 NC_012039.1 995366 995770 R Pfam match to PF04519.4 DUF583; hypothetical protein complement(995366..995770) Campylobacter lari RM2100 7410774 YP_002575614.1 CDS Cla_1041 NC_012039.1 995698 996606 R Pfam match to PF01551.13 Peptidase_M23; peptidase, M23/M37 family complement(995698..996606) Campylobacter lari RM2100 7410775 YP_002575615.1 CDS folC NC_012039.1 996596 997765 R Pfam match to PF08245.3 Mur_ligase_M; folylpolyglutamate synthase/dihydrofolate synthase complement(996596..997765) Campylobacter lari RM2100 7410776 YP_002575616.1 CDS Cla_1043 NC_012039.1 997767 999134 R hypothetical protein complement(997767..999134) Campylobacter lari RM2100 7410777 YP_002575617.1 CDS Cla_1044 NC_012039.1 999136 999633 R hypothetical protein complement(999136..999633) Campylobacter lari RM2100 7410778 YP_002575618.1 CDS leuS NC_012039.1 999630 1002059 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(999630..1002059) Campylobacter lari RM2100 7410779 YP_002575619.1 CDS Cla_1046 NC_012039.1 1002068 1002409 R hypothetical protein complement(1002068..1002409) Campylobacter lari RM2100 7410780 YP_002575620.1 CDS secF NC_012039.1 1002412 1003383 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(1002412..1003383) Campylobacter lari RM2100 7410781 YP_002575621.1 CDS secD NC_012039.1 1003383 1004963 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(1003383..1004963) Campylobacter lari RM2100 7410782 YP_002575622.1 CDS yajC NC_012039.1 1004956 1005231 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(1004956..1005231) Campylobacter lari RM2100 7410783 YP_002575623.1 CDS Cla_1050 NC_012039.1 1005201 1006523 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 1005201..1006523 Campylobacter lari RM2100 7410784 YP_002575624.1 CDS metK NC_012039.1 1006534 1007727 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1006534..1007727) Campylobacter lari RM2100 7410785 YP_002575625.1 CDS Cla_1052 NC_012039.1 1007860 1009086 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 1007860..1009086 Campylobacter lari RM2100 7410786 YP_002575626.1 CDS pyrB NC_012039.1 1009096 1009974 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 1009096..1009974 Campylobacter lari RM2100 7410787 YP_002575627.1 CDS pepF NC_012039.1 1009979 1011700 D Pfam matches to PF08439.1 Peptidase_M3_N, and to PF01432.11 Peptidase_M3; oligoendopeptidase F 1009979..1011700 Campylobacter lari RM2100 7410788 YP_002575628.1 CDS Cla_1055 NC_012039.1 1011693 1012139 D hypothetical protein 1011693..1012139 Campylobacter lari RM2100 7410789 YP_002575629.1 CDS uvrD NC_012039.1 1012136 1014199 D Pfam match to PF00580.12 UvrD-helicase; ATP-dependent DNA helicase 1012136..1014199 Campylobacter lari RM2100 7410790 YP_002575630.1 CDS truB NC_012039.1 1014196 1015014 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1014196..1015014 Campylobacter lari RM2100 7410791 YP_002575631.1 CDS csrA NC_012039.1 1015008 1015235 D Pfam match to PF02599.7 CsrA; carbon storage regulator 1015008..1015235 Campylobacter lari RM2100 7410792 YP_002575632.1 CDS ispE NC_012039.1 1015232 1015987 D catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1015232..1015987 Campylobacter lari RM2100 7410793 YP_002575633.1 CDS smpB NC_012039.1 1015984 1016442 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1015984..1016442 Campylobacter lari RM2100 7410794 YP_002575634.1 CDS trxC NC_012039.1 1016455 1017072 D Pfam match to PF00085.11 Thioredoxin; periplasmic thioredoxin 1016455..1017072 Campylobacter lari RM2100 7410795 YP_002575635.1 CDS clpS NC_012039.1 1017056 1017349 D Pfam match to PF02617.8 ClpS; ATP-dependent Clp protease adaptor protein ClpS 1017056..1017349 Campylobacter lari RM2100 7410796 YP_002575636.1 CDS clpA NC_012039.1 1017346 1019475 D Pfam matches to PF00004.20 AAA, and to PF07724.5 AAA_2; ATP-dependent ClpAP protease, ATP-binding subunit ClpA 1017346..1019475 Campylobacter lari RM2100 7410797 YP_002575637.1 CDS aat NC_012039.1 1019450 1020091 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1019450..1020091 Campylobacter lari RM2100 7410798 YP_002575638.1 CDS flgB NC_012039.1 1020183 1020614 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal-body rod protein FlgB 1020183..1020614 Campylobacter lari RM2100 7410799 YP_002575639.1 CDS flgC NC_012039.1 1020625 1021119 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1020625..1021119 Campylobacter lari RM2100 7410800 YP_002575640.1 CDS fliE NC_012039.1 1021123 1021416 D forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1021123..1021416 Campylobacter lari RM2100 7410801 YP_002575641.1 CDS pbpB NC_012039.1 1021474 1023231 D Pfam matches to PF03717.6 PBP_dimer, and to PF00905.13 Transpeptidase; penicillin-binding protein 1021474..1023231 Campylobacter lari RM2100 7410802 YP_002575642.1 CDS hemH NC_012039.1 1023261 1024163 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(1023261..1024163) Campylobacter lari RM2100 7410803 YP_002575643.1 CDS Cla_1070 NC_012039.1 1024163 1025023 R Pfam match to PF01408.13 GFO_IDH_MocA; oxidoreductase, Gfo/Idh/MocA family complement(1024163..1025023) Campylobacter lari RM2100 7410804 YP_002575644.1 CDS Cla_1071 NC_012039.1 1025020 1026102 R Pfam match to PF01041.8 DegT_DnrJ_EryC1; DegT/DnrJ/EryC1/StrS aminotransferase enzyme complement(1025020..1026102) Campylobacter lari RM2100 7410805 YP_002575645.1 CDS alaS NC_012039.1 1026205 1028742 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1026205..1028742 Campylobacter lari RM2100 7410806 YP_002575646.1 CDS maf NC_012039.1 1028742 1029284 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1028742..1029284 Campylobacter lari RM2100 7410807 YP_002575647.1 CDS pbpA NC_012039.1 1029281 1031215 D Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase; penicillin-binding protein 1A 1029281..1031215 Campylobacter lari RM2100 7410808 YP_002575648.1 CDS Cla_1075 NC_012039.1 1031301 1032194 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 1031301..1032194 Campylobacter lari RM2100 7410809 YP_002575649.1 CDS Cla_1076 NC_012039.1 1032194 1032754 D Pfam match to PF01794.10 Ferric_reduct; hypothetical protein 1032194..1032754 Campylobacter lari RM2100 7410810 YP_002575650.1 CDS Cla_1077 NC_012039.1 1032844 1034739 D hypothetical protein 1032844..1034739 Campylobacter lari RM2100 7410811 YP_002575651.1 CDS Cla_1078 NC_012039.1 1034802 1036922 R Pfam matches to PF00403.17 HMA, and to PF00122.11 E1-E2_ATPase; cation-transporting ATPase, P-type complement(1034802..1036922) Campylobacter lari RM2100 7410812 YP_002575652.1 CDS Cla_1079 NC_012039.1 1037118 1037432 R Pfam match to PF00893.10 Multi_Drug_Res; multidrug resistance efflux protein complement(1037118..1037432) Campylobacter lari RM2100 7410813 YP_002575653.1 CDS Cla_1080 NC_012039.1 1037429 1037770 R Pfam match to PF00893.10 Multi_Drug_Res; multidrug resistance efflux protein complement(1037429..1037770) Campylobacter lari RM2100 7410814 YP_002575654.1 CDS Cla_1081 NC_012039.1 1037922 1038629 D Pfam match to PF01709.11 DUF28; hypothetical protein 1037922..1038629 Campylobacter lari RM2100 7410815 YP_002575655.1 CDS ppi NC_012039.1 1038639 1039121 D Pfam match to PF00160.12 Pro_isomerase; peptidyl-prolyl cis-trans isomerase 1038639..1039121 Campylobacter lari RM2100 7410816 YP_002575656.1 CDS Cla_1083 NC_012039.1 1039169 1039597 D hypothetical protein 1039169..1039597 Campylobacter lari RM2100 7410817 YP_002575657.1 CDS Cla_1084 NC_012039.1 1039647 1040252 D Pfam match to PF09335.2 SNARE_assoc; DedA-like protein 1039647..1040252 Campylobacter lari RM2100 7410818 YP_002575658.1 CDS Cla_1085 NC_012039.1 1040402 1041178 D Pfam match to PF06738.3 DUF1212; hypothetical protein 1040402..1041178 Campylobacter lari RM2100 7410819 YP_002575659.1 CDS Cla_1086 NC_012039.1 1041175 1041699 D hypothetical protein 1041175..1041699 Campylobacter lari RM2100 7410820 YP_002575660.1 CDS argS NC_012039.1 1041690 1043285 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(1041690..1043285) Campylobacter lari RM2100 7410821 YP_002575661.1 CDS Cla_1088 NC_012039.1 1043295 1043534 R Pfam match to PF02416.7 MttA_Hcf106; Sec-independent protein translocase, MttA/Hcf106 family complement(1043295..1043534) Campylobacter lari RM2100 7410822 YP_002575662.1 CDS gmk NC_012039.1 1043536 1044150 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1043536..1044150) Campylobacter lari RM2100 7410823 YP_002575663.1 CDS Cla_1090 NC_012039.1 1044147 1045529 R hypothetical protein complement(1044147..1045529) Campylobacter lari RM2100 7410824 YP_002575664.1 CDS fliR NC_012039.1 1045589 1046359 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(1045589..1046359) Campylobacter lari RM2100 7410825 YP_002575665.1 CDS Cla_1092 NC_012039.1 1046346 1046981 R Pfam match to PF00005.18 ABC_tran; ABC transporter ATP-binding protein complement(1046346..1046981) Campylobacter lari RM2100 7410826 YP_002575666.1 CDS tsf NC_012039.1 1046984 1048060 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1046984..1048060) Campylobacter lari RM2100 7410827 YP_002575667.1 CDS rpsB NC_012039.1 1048060 1048845 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1048060..1048845) Campylobacter lari RM2100 7410828 YP_002575668.1 CDS petC NC_012039.1 1049019 1050146 R ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit complement(1049019..1050146) Campylobacter lari RM2100 7410829 YP_002575669.1 CDS petB NC_012039.1 1050149 1051393 R Pfam matches to PF00033.10 Cytochrom_B_N, and to PF00032.8 Cytochrom_B_C; ubiquinol cytochrome c oxidoreductase, cytochrome b subunit complement(1050149..1051393) Campylobacter lari RM2100 7410830 YP_002575670.1 CDS petA NC_012039.1 1051395 1051898 R Pfam match to PF00355.17 Rieske; ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit complement(1051395..1051898) Campylobacter lari RM2100 7410831 YP_002575671.1 CDS gidA NC_012039.1 1052065 1053918 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(1052065..1053918) Campylobacter lari RM2100 7410832 YP_002575672.1 CDS ribE NC_012039.1 1054042 1054650 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1054042..1054650 Campylobacter lari RM2100 7410833 YP_002575673.1 CDS Cla_1100 NC_012039.1 1054614 1055294 D Pfam match to PF02578.6 DUF152; hypothetical protein 1054614..1055294 Campylobacter lari RM2100 7410834 YP_002575674.1 CDS Cla_1101 NC_012039.1 1055287 1055493 D hypothetical protein 1055287..1055493 Campylobacter lari RM2100 7410835 YP_002575675.1 CDS Cla_1102 NC_012039.1 1055496 1056719 R Pfam matches to PF00512.16 HisKA, and to PF02518.17 HATPase_c; two-component sensor histidine kinase complement(1055496..1056719) Campylobacter lari RM2100 7410836 YP_002575676.1 CDS Cla_1103 NC_012039.1 1056712 1057377 R Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C; two-component response regulator complement(1056712..1057377) Campylobacter lari RM2100 7410837 YP_002575677.1 CDS Cla_1104 NC_012039.1 1057514 1057810 D non-heme iron protein, hemerythrin family 1057514..1057810 Campylobacter lari RM2100 7410838 YP_002575678.1 CDS Cla_1105 NC_012039.1 1057878 1058102 D non-heme iron protein, hemerythrin family 1057878..1058102 Campylobacter lari RM2100 7410839 YP_002575679.1 CDS Cla_1106 NC_012039.1 1058170 1058733 D non-heme iron protein, hemerythrin family 1058170..1058733 Campylobacter lari RM2100 7410840 YP_002575680.1 CDS Cla_1107 NC_012039.1 1058744 1058965 D Pfam match to PF01402.12 RHH_1; ribbon-helix-helix protein, copG family 1058744..1058965 Campylobacter lari RM2100 7410841 YP_002575681.1 CDS porA2 NC_012039.1 1059341 1060618 D Pfam match to PF05538.2 Campylo_MOMP; major outer membrane protein 1059341..1060618 Campylobacter lari RM2100 7410842 YP_002575682.1 CDS Cla_1109 NC_012039.1 1060908 1061345 D Pfam match to PF00034.12 Cytochrom_C; cytochrome c family protein 1060908..1061345 Campylobacter lari RM2100 7410843 YP_002575683.1 CDS livJ NC_012039.1 1061363 1062475 D Pfam match to PF01094.19 ANF_receptor; branched-chain amino-acid ABC transporter, periplasmic binding protein 1061363..1062475 Campylobacter lari RM2100 7410844 YP_002575684.1 CDS livK NC_012039.1 1062486 1063601 D Pfam match to PF01094.19 ANF_receptor; branched-chain amino-acid ABC transporter, periplasmic binding protein 1062486..1063601 Campylobacter lari RM2100 7410845 YP_002575685.1 CDS livH NC_012039.1 1063622 1064518 D Pfam match to PF02653.7 BPD_transp_2; branched-chain amino acid ABC transporter permease 1063622..1064518 Campylobacter lari RM2100 7410846 YP_002575686.1 CDS livM NC_012039.1 1064520 1065551 D Pfam match to PF02653.7 BPD_transp_2; branched-chain amino-acid ABC transporter permease 1064520..1065551 Campylobacter lari RM2100 7410847 YP_002575687.1 CDS livG NC_012039.1 1065548 1066318 D Pfam match to PF00005.18 ABC_tran; branched-chain amino acid ABC transporter, ATP-binding protein 1065548..1066318 Campylobacter lari RM2100 7410848 YP_002575688.1 CDS livF NC_012039.1 1066305 1067000 D Pfam match to PF00005.18 ABC_tran; branched-chain amino acid ABC transporter, ATP-binding protein 1066305..1067000 Campylobacter lari RM2100 7410849 YP_002575689.1 CDS Cla_1116 NC_012039.1 1067004 1070234 D Pfam match to PF01578.11 Cytochrom_C_asm; cytochrome c biogenesis protein, CcmF/CycK/CcsA family 1067004..1070234 Campylobacter lari RM2100 7410850 YP_002575690.1 CDS Cla_1117 NC_012039.1 1070246 1070671 D hypothetical protein 1070246..1070671 Campylobacter lari RM2100 7410851 YP_002575691.1 CDS lepA NC_012039.1 1070681 1072471 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1070681..1072471 Campylobacter lari RM2100 7410852 YP_002575692.1 CDS Cla_1119 NC_012039.1 1072501 1073121 R hypothetical protein complement(1072501..1073121) Campylobacter lari RM2100 7410853 YP_002575693.1 CDS Cla_1120 NC_012039.1 1073390 1074724 D Pfam matches to PF01554.9 MatE, and to PF01554.9 MatE; MATE efflux family protein 1073390..1074724 Campylobacter lari RM2100 7410854 YP_002575694.1 CDS hemD NC_012039.1 1074705 1075343 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(1074705..1075343) Campylobacter lari RM2100 7410855 YP_002575695.1 CDS thiE NC_012039.1 1075343 1075969 R Pfam match to PF02581.8 TMP-TENI; thiamine-phosphate pyrophosphorylase complement(1075343..1075969) Campylobacter lari RM2100 7410856 YP_002575696.1 CDS thiM NC_012039.1 1075956 1076738 R Pfam match to PF02110.6 HK; hydroxyethylthiazole kinase complement(1075956..1076738) Campylobacter lari RM2100 7410857 YP_002575697.1 CDS thiD NC_012039.1 1076742 1077554 R Pfam match to PF08543.3 Phos_pyr_kin; phosphomethylpyrimidine kinase complement(1076742..1077554) Campylobacter lari RM2100 7410858 YP_002575698.1 CDS Cla_1125 NC_012039.1 1077759 1078223 D Pfam match to PF01451.12 LMWPc; low molecular weight phosphotyrosine protein phosphatase 1077759..1078223 Campylobacter lari RM2100 7410859 YP_002575699.1 CDS Cla_1126 NC_012039.1 1078406 1078768 R hypothetical protein complement(1078406..1078768) Campylobacter lari RM2100 7410860 YP_002575700.1 CDS gidB NC_012039.1 1078762 1079355 R Pfam match to PF02527.6 GidB; glucose inhibited division protein B complement(1078762..1079355) Campylobacter lari RM2100 7410861 YP_002575701.1 CDS ribA NC_012039.1 1079352 1079912 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II complement(1079352..1079912) Campylobacter lari RM2100 7410862 YP_002575702.1 CDS hemB NC_012039.1 1079982 1080962 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1079982..1080962 Campylobacter lari RM2100 7410863 YP_002575703.1 CDS Cla_1130 NC_012039.1 1080965 1081450 D hypothetical protein 1080965..1081450 Campylobacter lari RM2100 7410864 YP_002575704.1 CDS hemN NC_012039.1 1081437 1082792 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1081437..1082792 Campylobacter lari RM2100 7410865 YP_002575705.1 CDS Cla_1132 NC_012039.1 1082794 1084062 D Pfam matches to PF02754.7 CCG, and to PF02754.7 CCG; iron-sulfur-cluster binding protein 1082794..1084062 Campylobacter lari RM2100 7410866 YP_002575706.1 CDS Cla_1133 NC_012039.1 1084066 1084275 R hypothetical protein complement(1084066..1084275) Campylobacter lari RM2100 7410867 YP_002575707.1 CDS alr NC_012039.1 1084313 1085320 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(1084313..1085320) Campylobacter lari RM2100 7410868 YP_002575708.1 CDS Cla_1135 NC_012039.1 1085320 1086291 R hypothetical protein complement(1085320..1086291) Campylobacter lari RM2100 7410869 YP_002575709.1 CDS Cla_1136 NC_012039.1 1086419 1086838 D Pfam match to PF04314.4 DUF461; hypothetical protein 1086419..1086838 Campylobacter lari RM2100 7410870 YP_002575710.1 CDS Cla_1137 NC_012039.1 1086838 1087284 D hypothetical protein 1086838..1087284 Campylobacter lari RM2100 7410871 YP_002575711.1 CDS Cla_1138 NC_012039.1 1087288 1087845 D Pfam match to PF02630.5 SCO1-SenC; SCO1/SenC family protein 1087288..1087845 Campylobacter lari RM2100 7410872 YP_002575712.1 CDS Cla_1139 NC_012039.1 1087857 1089059 R Pfam match to PF02687.12 FtsX; hypothetical protein complement(1087857..1089059) Campylobacter lari RM2100 7410873 YP_002575713.1 CDS Cla_1140 NC_012039.1 1089122 1089568 R hypothetical protein complement(1089122..1089568) Campylobacter lari RM2100 7410874 YP_002575714.1 CDS Cla_1141 NC_012039.1 1089544 1090062 R Pfam match to PF04164.4 DUF400; hypothetical protein complement(1089544..1090062) Campylobacter lari RM2100 7410875 YP_002575715.1 CDS gyrA NC_012039.1 1090123 1092699 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(1090123..1092699) Campylobacter lari RM2100 7410876 YP_002575716.1 CDS Cla_1143 NC_012039.1 1092736 1093308 R purine/pyrimidine phosphoribosyltransferase complement(1092736..1093308) Campylobacter lari RM2100 7410877 YP_002575717.1 CDS mapA NC_012039.1 1093305 1093952 R outer membrane liproprotein MapA complement(1093305..1093952) Campylobacter lari RM2100 7410878 YP_002575718.1 CDS Cla_1145 NC_012039.1 1094158 1095519 D Pfam match to PF00939.10 Na_sulph_symp; sodium/sulfate transporter 1094158..1095519 Campylobacter lari RM2100 7410879 YP_002575719.1 CDS Cla_1146 NC_012039.1 1095550 1096152 R Pfam match to PF02581.8 TMP-TENI; thiamine-phosphate pyrophosphorylase/regulatory protein TenI complement(1095550..1096152) Campylobacter lari RM2100 7410880 YP_002575720.1 CDS thiH NC_012039.1 1096142 1097275 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(1096142..1097275) Campylobacter lari RM2100 7410881 YP_002575721.1 CDS thiG NC_012039.1 1097277 1098035 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(1097277..1098035) Campylobacter lari RM2100 7410882 YP_002575722.1 CDS thiF NC_012039.1 1098035 1098832 R catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF complement(1098035..1098832) Campylobacter lari RM2100 7410883 YP_002575723.1 CDS thiS NC_012039.1 1098832 1099023 R Pfam match to PF02597.11 ThiS; thiamine biosynthesis protein ThiS complement(1098832..1099023) Campylobacter lari RM2100 7410314 YP_002575724.1 CDS Cla_1151 NC_012039.1 1099057 1099815 R hypothetical protein complement(1099057..1099815) Campylobacter lari RM2100 7410315 YP_002575725.1 CDS dapE NC_012039.1 1099950 1101050 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(1099950..1101050) Campylobacter lari RM2100 7410316 YP_002575726.1 CDS Cla_1153 NC_012039.1 1101054 1101647 R Pfam match to PF01810.9 LysE; hypothetical protein complement(1101054..1101647) Campylobacter lari RM2100 7410317 YP_002575727.1 CDS Cla_1154 NC_012039.1 1101641 1102339 R Pfam match to PF02146.8 SIR2; NAD-dependent deacetylase complement(1101641..1102339) Campylobacter lari RM2100 7410318 YP_002575728.1 CDS mutS NC_012039.1 1102348 1104543 R MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein complement(1102348..1104543) Campylobacter lari RM2100 7410319 YP_002575729.1 CDS Cla_1156 NC_012039.1 1104543 1104890 R hypothetical protein complement(1104543..1104890) Campylobacter lari RM2100 7410320 YP_002575730.1 CDS murC NC_012039.1 1104883 1106175 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1104883..1106175) Campylobacter lari RM2100 7410321 YP_002575731.1 CDS Cla_1158 NC_012039.1 1106184 1106975 R hydrolase, carbon-nitrogen family complement(1106184..1106975) Campylobacter lari RM2100 7410322 YP_002575732.1 CDS guaB NC_012039.1 1107141 1108592 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(1107141..1108592) Campylobacter lari RM2100 7410323 YP_002575733.1 CDS gatA NC_012039.1 1108603 1109967 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1108603..1109967) Campylobacter lari RM2100 7410324 YP_002575734.1 CDS ileS NC_012039.1 1110067 1112832 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(1110067..1112832) Campylobacter lari RM2100 7410325 YP_002575735.1 CDS Cla_1162 NC_012039.1 1112933 1114024 D Pfam match to PF02464.8 CinA; competence/damage-inducible protein, CinA family 1112933..1114024 Campylobacter lari RM2100 7410326 YP_002575736.1 CDS Cla_1163 NC_012039.1 1114071 1114568 R lipoprotein thioredoxin complement(1114071..1114568) Campylobacter lari RM2100 7410327 YP_002575737.1 CDS Cla_1164 NC_012039.1 1114529 1115020 R Pfam match to PF08534.1 Redoxin; lipoprotein thioredoxin complement(1114529..1115020) Campylobacter lari RM2100 7410328 YP_002575738.1 CDS Cla_1165 NC_012039.1 1115010 1115666 R Pfam match to PF00005.18 ABC_tran; ABC transporter ATP-binding protein complement(1115010..1115666) Campylobacter lari RM2100 7410329 YP_002575739.1 CDS Cla_1166 NC_012039.1 1115666 1116781 R Pfam match to PF02687.12 FtsX; ABC transporter permease complement(1115666..1116781) Campylobacter lari RM2100 7410330 YP_002575740.1 CDS Cla_1167 NC_012039.1 1116771 1118063 R Pfam match to PF02687.12 FtsX; ABC transporter permease complement(1116771..1118063) Campylobacter lari RM2100 7410331 YP_002575741.1 CDS Cla_1168 NC_012039.1 1118053 1119474 R Pfam match to PF04945.4 YHS; hypothetical protein complement(1118053..1119474) Campylobacter lari RM2100 7410332 YP_002575742.1 CDS p19 NC_012039.1 1119551 1120072 R hypothetical protein complement(1119551..1120072) Campylobacter lari RM2100 7410333 YP_002575743.1 CDS Cla_1170 NC_012039.1 1120069 1122144 R Pfam match to PF03239.5 FTR1; iron permease complement(1120069..1122144) Campylobacter lari RM2100 7410334 YP_002575744.1 CDS Cla_1171 NC_012039.1 1122815 1123672 R Pfam match to PF01063.10 Aminotran_4; D-amino acid aminotransferase complement(1122815..1123672) Campylobacter lari RM2100 7410335 YP_002575745.1 CDS Cla_1172 NC_012039.1 1123684 1124661 R lipopolysaccharide core biosynthesis protein complement(1123684..1124661) Campylobacter lari RM2100 7410336 YP_002575746.1 CDS Cla_1173 NC_012039.1 1124791 1125282 D hypothetical protein 1124791..1125282 Campylobacter lari RM2100 7410337 YP_002575747.1 CDS Cla_1174 NC_012039.1 1125279 1126193 R hypothetical protein complement(1125279..1126193) Campylobacter lari RM2100 7410338 YP_002575748.1 CDS mraW NC_012039.1 1126197 1127114 R Pfam match to PF01795.10 Methyltransf_5; S-adenosyl-methyltransferase MraW complement(1126197..1127114) Campylobacter lari RM2100 7410339 YP_002575749.1 CDS Cla_1176 NC_012039.1 1127176 1127754 D hypothetical protein 1127176..1127754 Campylobacter lari RM2100 7410340 YP_002575750.1 CDS Cla_1177 NC_012039.1 1127834 1129312 D peptidyl-prolyl cis-trans isomerase D 1127834..1129312 Campylobacter lari RM2100 7410341 YP_002575751.1 CDS ftsA NC_012039.1 1129309 1130688 D Pfam matches to PF02491.11 FtsA, and to PF02491.11 FtsA; cell division protein FtsA 1129309..1130688 Campylobacter lari RM2100 7410342 YP_002575752.1 CDS ftsZ NC_012039.1 1130700 1131806 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1130700..1131806 Campylobacter lari RM2100 7410343 YP_002575753.1 CDS pncB NC_012039.1 1131827 1133203 D Pfam match to PF04095.7 NAPRTase; nicotinate phosphoribosyltransferase 1131827..1133203 Campylobacter lari RM2100 7410344 YP_002575754.1 CDS ispG NC_012039.1 1133187 1134257 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(1133187..1134257) Campylobacter lari RM2100 7410345 YP_002575755.1 CDS priA NC_012039.1 1134314 1136158 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(1134314..1136158) Campylobacter lari RM2100 7410346 YP_002575756.1 CDS Cla_1183 NC_012039.1 1136155 1136625 R Pfam match to PF07963.3 N_methyl; N-terminal methylation domain protein complement(1136155..1136625) Campylobacter lari RM2100 7410347 YP_002575757.1 CDS Cla_1184 NC_012039.1 1136626 1136865 R hypothetical protein complement(1136626..1136865) Campylobacter lari RM2100 7410348 YP_002575758.1 CDS Cla_1185 NC_012039.1 1136852 1137085 R hypothetical protein complement(1136852..1137085) Campylobacter lari RM2100 7410349 YP_002575759.1 CDS uvrB NC_012039.1 1137240 1139213 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1137240..1139213 Campylobacter lari RM2100 7410350 YP_002575760.1 CDS efp NC_012039.1 1139231 1139800 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1139231..1139800) Campylobacter lari RM2100 7410351 YP_002575761.1 CDS serA NC_012039.1 1139861 1141441 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(1139861..1141441) Campylobacter lari RM2100 7410352 YP_002575762.1 CDS Cla_1189 NC_012039.1 1141438 1141917 R hypothetical protein complement(1141438..1141917) Campylobacter lari RM2100 7410353 YP_002575763.1 CDS rpsA NC_012039.1 1142038 1143591 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(1142038..1143591) Campylobacter lari RM2100 7410354 YP_002575764.1 CDS ispH NC_012039.1 1143647 1144483 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(1143647..1144483) Campylobacter lari RM2100 7410355 YP_002575765.1 CDS aroA NC_012039.1 1144473 1145759 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1144473..1145759) Campylobacter lari RM2100 7410356 YP_002575766.1 CDS pheT NC_012039.1 1145756 1148086 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1145756..1148086) Campylobacter lari RM2100 7410357 YP_002575767.1 CDS pheS NC_012039.1 1148083 1149075 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(1148083..1149075) Campylobacter lari RM2100 7410358 YP_002575768.1 CDS Cla_1195 NC_012039.1 1149160 1149525 D Pfam match to PF01230.14 HIT; HIT family hydrolase 1149160..1149525 Campylobacter lari RM2100 7410359 YP_002575769.1 CDS pckA NC_012039.1 1149543 1151117 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(1149543..1151117) Campylobacter lari RM2100 7410360 YP_002575770.1 CDS pycB NC_012039.1 1151128 1152906 R Pfam matches to PF00682.10 HMGL-like, and to PF00364.13 Biotin_lipoyl; pyruvate carboxylase, subunit B complement(1151128..1152906) Campylobacter lari RM2100 7410361 YP_002575771.1 CDS Cla_1198 NC_012039.1 1152965 1154299 R Pfam match to PF00209.9 SNF; sodium- and chloride-dependent transporter, SNF family complement(1152965..1154299) Campylobacter lari RM2100 7410362 YP_002575772.1 CDS Cla_1199 NC_012039.1 1154309 1155646 R Pfam match to PF00209.9 SNF; sodium- and chloride-dependent transporter, SNF family complement(1154309..1155646) Campylobacter lari RM2100 7410363 YP_002575773.1 CDS Cla_1200 NC_012039.1 1155656 1157008 R Pfam match to PF00209.9 SNF; sodium- and chloride-dependent transporter, SNF family complement(1155656..1157008) Campylobacter lari RM2100 7410364 YP_002575774.1 CDS atpE NC_012039.1 1157204 1157527 D Pfam match to PF00137.12 ATP-synt_C; ATP synthase F0 subunit C 1157204..1157527 Campylobacter lari RM2100 7410365 YP_002575775.1 CDS Cla_1203 NC_012039.1 1157664 1158104 D hypothetical protein 1157664..1158104 Campylobacter lari RM2100 7410367 YP_002575776.1 CDS Cla_1204 NC_012039.1 1158165 1159460 D Pfam matches to PF08447.2 PAS_3, and to PF08447.2 PAS_3; MCP-domain signal transduction protein 1158165..1159460 Campylobacter lari RM2100 7410368 YP_002575777.1 CDS pyrC2 NC_012039.1 1159479 1160636 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(1159479..1160636) Campylobacter lari RM2100 7410369 YP_002575778.1 CDS gpsA NC_012039.1 1160633 1161535 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(1160633..1161535) Campylobacter lari RM2100 7410370 YP_002575779.1 CDS gatB NC_012039.1 1161538 1162956 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1161538..1162956) Campylobacter lari RM2100 7410371 YP_002575780.1 CDS atpB NC_012039.1 1163081 1163761 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A complement(1163081..1163761) Campylobacter lari RM2100 7410372 YP_002575781.1 CDS Cla_1209 NC_012039.1 1163824 1165332 R FAD-binding domain protein complement(1163824..1165332) Campylobacter lari RM2100 7410373 YP_002575782.1 CDS radA NC_012039.1 1165323 1166663 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1165323..1166663) Campylobacter lari RM2100 7410374 YP_002575783.1 CDS ftsY NC_012039.1 1166663 1167529 R Pfam match to PF00448.13 SRP54; signal recognition particle-docking GTPase FtsY complement(1166663..1167529) Campylobacter lari RM2100 7410375 YP_002575784.1 CDS Cla_1212 NC_012039.1 1167529 1168074 R Pfam match to PF00578.12 AhpC-TSA; hypothetical protein complement(1167529..1168074) Campylobacter lari RM2100 7410376 YP_002575785.1 CDS Cla_1213 NC_012039.1 1168142 1168771 D Pfam match to PF01812.11 5-FTHF_cyc-lig; 5-formyltetrahydrofolate cyclo-ligase 1168142..1168771 Campylobacter lari RM2100 7410377 YP_002575786.1 CDS Cla_1214 NC_012039.1 1168695 1170248 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1168695..1170248 Campylobacter lari RM2100 7410378 YP_002575787.1 CDS Cla_1215 NC_012039.1 1170257 1170820 D Pfam match to PF09335.2 SNARE_assoc; hypothetical protein 1170257..1170820 Campylobacter lari RM2100 7410379 YP_002575788.1 CDS Cla_1216 NC_012039.1 1170817 1172073 D Pfam match to PF03772.7 Competence; ComEC/Rec2-related protein domain protein 1170817..1172073 Campylobacter lari RM2100 7410380 YP_002575789.1 CDS rbn NC_012039.1 1172020 1172832 R Pfam match to PF03631.6 Ribonuclease_BN; tRNA-processing ribonuclease BN complement(1172020..1172832) Campylobacter lari RM2100 7410381 YP_002575790.1 CDS glcD NC_012039.1 1172832 1174214 R Pfam matches to PF01565.14 FAD_binding_4, and to PF02913.10 FAD-oxidase_C; glycolate oxidase complement(1172832..1174214) Campylobacter lari RM2100 7410382 YP_002575791.1 CDS Cla_1219 NC_012039.1 1174214 1174933 R hypothetical protein complement(1174214..1174933) Campylobacter lari RM2100 7410383 YP_002575792.1 CDS Cla_1220 NC_012039.1 1175052 1176209 D Pfam match to PF01551.13 Peptidase_M23; peptidase, M23/M37 family 1175052..1176209 Campylobacter lari RM2100 7410384 YP_002575793.1 CDS Cla_1221 NC_012039.1 1176211 1177554 D Pfam matches to PF00571.19 CBS, and to PF01769.7 MgtE; Mg/Co/Ni transporter, MgtE family 1176211..1177554 Campylobacter lari RM2100 7410385 YP_002575794.1 CDS tpx2 NC_012039.1 1177566 1178084 D Pfam match to PF08534.1 Redoxin; thiol peroxidase 1177566..1178084 Campylobacter lari RM2100 7410386 YP_002575795.1 CDS dnaB NC_012039.1 1178081 1179466 R unwinds double stranded DNA; replicative DNA helicase complement(1178081..1179466) Campylobacter lari RM2100 7410387 YP_002575796.1 CDS cysK NC_012039.1 1179479 1180381 R Pfam match to PF00291.16 PALP; cysteine synthase A complement(1179479..1180381) Campylobacter lari RM2100 7410388 YP_002575797.1 CDS hup NC_012039.1 1180477 1180779 R Pfam match to PF00216.12 Bac_DNA_binding; DNA-binding protein HU complement(1180477..1180779) Campylobacter lari RM2100 7410389 YP_002575798.1 CDS waaF NC_012039.1 1180872 1181786 R Pfam match to PF01075.8 Glyco_transf_9; lipopolysaccharide heptosyltransferase II complement(1180872..1181786) Campylobacter lari RM2100 7410390 YP_002575799.1 CDS waaV NC_012039.1 1181835 1182647 D Pfam match to PF00535.17 Glycos_transf_2; lipooligosaccharide biosynthesis glycosyltransferase 1181835..1182647 Campylobacter lari RM2100 7410391 YP_002575800.1 CDS ptmA NC_012039.1 1182642 1183406 R flagellin modification protein A complement(1182642..1183406) Campylobacter lari RM2100 7410392 YP_002575801.1 CDS ptmB NC_012039.1 1183406 1184113 R Pfam match to PF02348.10 CTP_transf_3; flagellin modification protein PtmB, acylneuraminate cytidylyltransferase complement(1183406..1184113) Campylobacter lari RM2100 7410393 YP_002575802.1 CDS ptmF NC_012039.1 1184106 1184996 R flagellin modification protein PtmF complement(1184106..1184996) Campylobacter lari RM2100 7410394 YP_002575803.1 CDS ptmE NC_012039.1 1184993 1186030 R Pfam matches to PF00571.19 CBS, and to PF00483.14 NTP_transferase; flagellin modification protein PtmE, sugar-phosphate nucleotide transferase complement(1184993..1186030) Campylobacter lari RM2100 7410395 YP_002575804.1 CDS Cla_1232 NC_012039.1 1186041 1186712 R Pfam match to PF02585.8 PIG-L; LmbE-like protein complement(1186041..1186712) Campylobacter lari RM2100 7410396 YP_002575805.1 CDS Cla_1233 NC_012039.1 1186722 1187615 R Pfam match to PF00551.10 Formyl_trans_N; formyltransferase complement(1186722..1187615) Campylobacter lari RM2100 7410966 YP_002575806.1 CDS ptmD NC_012039.1 1187612 1188784 R Pfam match to PF02350.10 Epimerase_2; flagellin modification protein PtmD, UDP-N-acetylglucosamine 2-epimerase complement(1187612..1188784) Campylobacter lari RM2100 7410967 YP_002575807.1 CDS ptmC NC_012039.1 1188777 1189781 R Pfam match to PF03102.5 NeuB; flagellin modification protein PtmC, N-acetylneuraminic acid synthetase complement(1188777..1189781) Campylobacter lari RM2100 7410968 YP_002575808.1 CDS Cla_1236 NC_012039.1 1189797 1190687 R Pfam match to PF00551.10 Formyl_trans_N; formyltransferase complement(1189797..1190687) Campylobacter lari RM2100 7410969 YP_002575809.1 CDS Cla_1237 NC_012039.1 1190724 1191731 R Pfam match to PF01370.12 Epimerase; NAD-dependent epimerase/dehydratase complement(1190724..1191731) Campylobacter lari RM2100 7410970 YP_002575810.1 CDS Cla_1239 NC_012039.1 1192633 1192782 D CgtB glycosyltransferase 1192633..1192782 Campylobacter lari RM2100 7410972 YP_002575811.1 CDS Cla_1240 NC_012039.1 1192930 1194135 D Pfam match to PF00535.17 Glycos_transf_2; glycosyltransferase 1192930..1194135 Campylobacter lari RM2100 7410973 YP_002575812.1 CDS Cla_1241 NC_012039.1 1194139 1195059 D Pfam match to PF00535.17 Glycos_transf_2; glycosyltransferase 1194139..1195059 Campylobacter lari RM2100 7410974 YP_002575813.1 CDS Cla_1242 NC_012039.1 1195049 1196218 R Pfam match to PF00535.17 Glycos_transf_2; glycosyltransferase complement(1195049..1196218) Campylobacter lari RM2100 7410975 YP_002575814.1 CDS Cla_1243 NC_012039.1 1196278 1197273 D Pfam match to PF05704.3 Caps_synth; glycosyltransferase 1196278..1197273 Campylobacter lari RM2100 7410976 YP_002575815.1 CDS Cla_1244 NC_012039.1 1197276 1198430 R Pfam match to PF00535.17 Glycos_transf_2; glycosyltransferase complement(1197276..1198430) Campylobacter lari RM2100 7410977 YP_002575816.1 CDS Cla_1245 NC_012039.1 1198434 1199981 R Pfam matches to PF00535.17 Glycos_transf_2, and to PF00535.17 Glycos_transf_2; two-domain glycosyltransferase complement(1198434..1199981) Campylobacter lari RM2100 7410978 YP_002575817.1 CDS htrB NC_012039.1 1199990 1200862 R acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; essential for survival; plays a role in cell responses to environmental changes; lipid A biosynthesis lauroyl acyltransferase complement(1199990..1200862) Campylobacter lari RM2100 7410979 YP_002575818.1 CDS waaC NC_012039.1 1200859 1201878 R Pfam match to PF01075.8 Glyco_transf_9; lipopolysaccharide heptosyltransferase I complement(1200859..1201878) Campylobacter lari RM2100 7410980 YP_002575819.1 CDS wlaX NC_012039.1 1201944 1202723 D polysaccharide biosynthesis protein 1201944..1202723 Campylobacter lari RM2100 7410981 YP_002575820.1 CDS galE NC_012039.1 1202782 1203768 D Pfam match to PF01370.12 Epimerase; UDP-glucose 4-epimerase 1202782..1203768 Campylobacter lari RM2100 7410982 YP_002575821.1 CDS pglK NC_012039.1 1203762 1205456 D Pfam match to PF00005.18 ABC_tran; ABC transporter, ATP-binding protein/permease, glycan transport 1203762..1205456 Campylobacter lari RM2100 7410983 YP_002575822.1 CDS pglH NC_012039.1 1205453 1206517 D Pfam match to PF00534.11 Glycos_transf_1; GalNAc alpha-1,4-transferase 1205453..1206517 Campylobacter lari RM2100 7410984 YP_002575823.1 CDS pglJ NC_012039.1 1206519 1207619 D Pfam match to PF00534.11 Glycos_transf_1; GalNAc alpha-1,4-transferase 1206519..1207619 Campylobacter lari RM2100 7410985 YP_002575824.1 CDS pglB NC_012039.1 1207621 1209759 D Pfam match to PF02516.5 STT3; oligosaccharide transferase to N-glycosylate proteins 1207621..1209759 Campylobacter lari RM2100 7410986 YP_002575825.1 CDS pglA NC_012039.1 1209756 1210883 D Pfam match to PF00534.11 Glycos_transf_1; GalNAc alpha-1,3-transferase 1209756..1210883 Campylobacter lari RM2100 7410987 YP_002575826.1 CDS pglC NC_012039.1 1210876 1211478 D Pfam match to PF02397.7 Bac_transf; galactosyltransferase 1210876..1211478 Campylobacter lari RM2100 7410988 YP_002575827.1 CDS pglD NC_012039.1 1211444 1212058 D UDP-4-amino-sugar N-acetyltransferase 1211444..1212058 Campylobacter lari RM2100 7410989 YP_002575828.1 CDS pglE NC_012039.1 1212058 1213218 D Pfam match to PF01041.8 DegT_DnrJ_EryC1; UDP-4-keto-6-deoxy-GlcNAc C4 aminotransferase 1212058..1213218 Campylobacter lari RM2100 7410990 YP_002575829.1 CDS pglF NC_012039.1 1213220 1214983 D Pfam match to PF02719.6 Polysacc_synt_2; UDP-GlcNAc C4,6 dehydratase 1213220..1214983 Campylobacter lari RM2100 7410991 YP_002575830.1 CDS cheY NC_012039.1 1215096 1215473 D Pfam match to PF00072.15 Response_reg; chemotaxis protein CheY 1215096..1215473 Campylobacter lari RM2100 7410992 YP_002575831.1 CDS prmA NC_012039.1 1215486 1216322 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 1215486..1216322 Campylobacter lari RM2100 7410993 YP_002575832.1 CDS ftsH2 NC_012039.1 1216322 1218244 D Pfam matches to PF06480.6 FtsH_ext, and to PF00004.20 AAA; cell division protein FtsH 1216322..1218244 Campylobacter lari RM2100 7410994 YP_002575833.1 CDS Cla_1262 NC_012039.1 1218244 1218861 D phosphatidylserine decarboxylase related protein 1218244..1218861 Campylobacter lari RM2100 7410995 YP_002575834.1 CDS pssA NC_012039.1 1218858 1219568 D Pfam match to PF01066.12 CDP-OH_P_transf; CDP-diacylglycerol--serine O-phosphatidyltransferase 1218858..1219568 Campylobacter lari RM2100 7410996 YP_002575835.1 CDS Cla_1264 NC_012039.1 1219634 1220188 D hypothetical protein 1219634..1220188 Campylobacter lari RM2100 7410997 YP_002575836.1 CDS Cla_1266 NC_012039.1 1220340 1221806 D Pfam match to PF00817.11 IMS; UV damage repair protein, ImpB/MucB/SamB family 1220340..1221806 Campylobacter lari RM2100 7410999 YP_002575837.1 CDS Cla_1267 NC_012039.1 1221799 1221987 D hypothetical protein 1221799..1221987 Campylobacter lari RM2100 7411000 YP_002575838.1 CDS ciaB NC_012039.1 1221991 1223826 R invasion antigen B complement(1221991..1223826) Campylobacter lari RM2100 7411001 YP_002575839.1 CDS Cla_1269 NC_012039.1 1223891 1224295 D Pfam match to PF03061.13 4HBT; acyl-CoA thioester hydrolase 1223891..1224295 Campylobacter lari RM2100 7411002 YP_002575840.1 CDS prsA NC_012039.1 1224360 1225289 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1224360..1225289 Campylobacter lari RM2100 7411003 YP_002575841.1 CDS Cla_1271 NC_012039.1 1225409 1225630 D hypothetical protein 1225409..1225630 Campylobacter lari RM2100 7411004 YP_002575843.1 CDS Cla_1274 NC_012039.1 1225995 1226405 R hypothetical protein complement(1225995..1226405) Campylobacter lari RM2100 7411007 YP_002575844.1 CDS ruvB NC_012039.1 1226497 1227507 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1226497..1227507 Campylobacter lari RM2100 7411008 YP_002575845.1 CDS amaA NC_012039.1 1227497 1228540 D Pfam match to PF01594.7 UPF0118; acid membrane antigen A 1227497..1228540 Campylobacter lari RM2100 7411009 YP_002575846.1 CDS Cla_1277 NC_012039.1 1228547 1229848 R Pfam match to PF07690.7 MFS_1; major facilitator superfamily transporter complement(1228547..1229848) Campylobacter lari RM2100 7411010 YP_002575847.1 CDS Cla_1278 NC_012039.1 1229925 1230542 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 1229925..1230542 Campylobacter lari RM2100 7411011 YP_002575848.1 CDS Cla_1279 NC_012039.1 1230567 1233032 R Pfam match to PF02460.9 Patched; hypothetical protein complement(1230567..1233032) Campylobacter lari RM2100 7411012 YP_002575849.1 CDS Cla_1280 NC_012039.1 1233032 1233601 R Pfam match to PF05494.3 Tol_Tol_Ttg2; organic solvent tolerance protein complement(1233032..1233601) Campylobacter lari RM2100 7411013 YP_002575850.1 CDS Cla_1281 NC_012039.1 1233611 1234297 R Pfam match to PF04333.4 VacJ; VacJ family complement(1233611..1234297) Campylobacter lari RM2100 7411014 YP_002575851.1 CDS modA NC_012039.1 1234517 1235263 D Pfam match to PF01547.16 SBP_bac_1; molybdenum ABC transporter, periplasmic molybdate-binding protein 1234517..1235263 Campylobacter lari RM2100 7411015 YP_002575852.1 CDS Cla_1283 NC_012039.1 1235260 1235649 D hypothetical protein 1235260..1235649 Campylobacter lari RM2100 7411016 YP_002575853.1 CDS modC NC_012039.1 1235643 1236512 D Pfam match to PF00005.18 ABC_tran; molybdenum ABC transporter, ATP-binding protein 1235643..1236512 Campylobacter lari RM2100 7411017 YP_002575854.1 CDS Cla_1285 NC_012039.1 1236534 1238186 R Pfam match to PF00037.18 Fer4; (Fe-S)-binding protein complement(1236534..1238186) Campylobacter lari RM2100 7411018 YP_002575855.1 CDS selA NC_012039.1 1238276 1239607 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 1238276..1239607 Campylobacter lari RM2100 7411019 YP_002575856.1 CDS selB NC_012039.1 1239600 1241405 D Pfam matches to PF00009.18 GTP_EFTU, and to PF03144.16 GTP_EFTU_D2; selenocysteine-specific elongation factor 1239600..1241405 Campylobacter lari RM2100 7411020 YP_002575857.1 CDS Cla_1288 NC_012039.1 1241459 1242172 D hypothetical protein 1241459..1242172 Campylobacter lari RM2100 7411021 YP_002575858.1 CDS Cla_1289 NC_012039.1 1242159 1242686 D hypothetical protein 1242159..1242686 Campylobacter lari RM2100 7411022 YP_002575859.1 CDS gdhA NC_012039.1 1242709 1244076 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1242709..1244076) Campylobacter lari RM2100 7411023 YP_002575860.1 CDS Cla_1291 NC_012039.1 1244089 1244754 R Pfam match to PF02621.5 DUF178; hypothetical protein complement(1244089..1244754) Campylobacter lari RM2100 7411024 YP_002575861.1 CDS mez NC_012039.1 1245001 1246236 R Pfam matches to PF00390.10 malic, and to PF03949.6 Malic_M; malate oxidoreductase complement(1245001..1246236) Campylobacter lari RM2100 7411025 YP_002575862.1 CDS gltX NC_012039.1 1246236 1247627 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(1246236..1247627) Campylobacter lari RM2100 7411026 YP_002575863.1 CDS Cla_1294 NC_012039.1 1247692 1248519 D Pfam match to PF09312.2 SurA_N; hypothetical protein 1247692..1248519 Campylobacter lari RM2100 7411027 YP_002575864.1 CDS accC NC_012039.1 1248540 1249871 R biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase complement(1248540..1249871) Campylobacter lari RM2100 7411028 YP_002575865.1 CDS accB NC_012039.1 1249873 1250322 R Pfam match to PF00364.13 Biotin_lipoyl; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(1249873..1250322) Campylobacter lari RM2100 7411029 YP_002575866.1 CDS dcd NC_012039.1 1250454 1251014 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1250454..1251014 Campylobacter lari RM2100 7411030 YP_002575867.1 CDS pseB NC_012039.1 1251065 1252072 D Pfam match to PF02719.6 Polysacc_synt_2; UDP-GlcNAc C6-dehydratase/C4-reductase 1251065..1252072 Campylobacter lari RM2100 7411031 YP_002575868.1 CDS Cla_1299 NC_012039.1 1252069 1253199 D Pfam match to PF01041.8 DegT_DnrJ_EryC1; aminotransferase, DegT/DnrJ/EryC1/StrS family 1252069..1253199 Campylobacter lari RM2100 7411032 YP_002575869.1 CDS Cla_1300 NC_012039.1 1253192 1254460 D hypothetical protein 1253192..1254460 Campylobacter lari RM2100 7411033 YP_002575870.1 CDS Cla_1301 NC_012039.1 1254457 1255239 D hypothetical protein 1254457..1255239 Campylobacter lari RM2100 7411034 YP_002575871.1 CDS acpP2 NC_012039.1 1255241 1255465 D acyl carrier protein 1255241..1255465 Campylobacter lari RM2100 7411035 YP_002575872.1 CDS Cla_1303 NC_012039.1 1255459 1256361 D Pfam match to PF08242.3 Methyltransf_12; methyltransferase type 12 domain 1255459..1256361 Campylobacter lari RM2100 7411036 YP_002575873.1 CDS Cla_1304 NC_012039.1 1256358 1257881 D HAD superfamily hydrolase 1256358..1257881 Campylobacter lari RM2100 7411037 YP_002575874.1 CDS fabH1 NC_012039.1 1257865 1258932 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; paralogs which do not contain the N-X-R ACP-binding site motif; 3-oxoacyl-ACP synthase 1257865..1258932 Campylobacter lari RM2100 7411038 YP_002575875.1 CDS acpP3 NC_012039.1 1258925 1259143 D acyl carrier protein 1258925..1259143 Campylobacter lari RM2100 7411039 YP_002575876.1 CDS Cla_1307 NC_012039.1 1259140 1260372 R hypothetical protein complement(1259140..1260372) Campylobacter lari RM2100 7411040 YP_002575877.1 CDS Cla_1308 NC_012039.1 1260381 1261601 R hypothetical protein complement(1260381..1261601) Campylobacter lari RM2100 7411041 YP_002575878.1 CDS Cla_1309 NC_012039.1 1261671 1262003 D hypothetical protein 1261671..1262003 Campylobacter lari RM2100 7411042 YP_002575879.1 CDS Cla_1310 NC_012039.1 1261960 1262454 D hypothetical protein 1261960..1262454 Campylobacter lari RM2100 7411043 YP_002575880.1 CDS Cla_1311 NC_012039.1 1262456 1263952 D Pfam match to PF00501.19 AMP-binding; amino acid adenylation protein 1262456..1263952 Campylobacter lari RM2100 7411044 YP_002575881.1 CDS Cla_1312 NC_012039.1 1263939 1264655 D Pfam match to PF00551.10 Formyl_trans_N; formyltransferase domain protein 1263939..1264655 Campylobacter lari RM2100 7411045 YP_002575882.1 CDS acpP4 NC_012039.1 1264670 1264894 D acyl carrier protein 1264670..1264894 Campylobacter lari RM2100 7411046 YP_002575883.1 CDS Cla_1314 NC_012039.1 1264891 1265856 D 3-oxoacyl-ACP synthase 1264891..1265856 Campylobacter lari RM2100 7411047 YP_002575884.1 CDS acpP5 NC_012039.1 1267166 1267396 D acyl carrier protein 1267166..1267396 Campylobacter lari RM2100 7410397 YP_002575885.1 CDS Cla_1318 NC_012039.1 1268607 1269353 R hypothetical protein complement(1268607..1269353) Campylobacter lari RM2100 7409824 YP_002575886.1 CDS Cla_1319 NC_012039.1 1269356 1270600 R hypothetical protein complement(1269356..1270600) Campylobacter lari RM2100 7409825 YP_002575887.1 CDS pseF NC_012039.1 1270664 1271359 D Pfam match to PF02348.10 CTP_transf_3; CMP-N-acetylneuraminic acid synthetase 1270664..1271359 Campylobacter lari RM2100 7409826 YP_002575888.1 CDS pseG NC_012039.1 1271356 1272180 D nucleotidase specific for PseC product, UDP-4-amino-4,6-dideoxy-beta-L-AltNAc 1271356..1272180 Campylobacter lari RM2100 7409827 YP_002575889.1 CDS pseH NC_012039.1 1272173 1272664 D Pfam match to PF00583.15 Acetyltransf_1; N-acetyltransferase 1272173..1272664 Campylobacter lari RM2100 7409828 YP_002575890.1 CDS Cla_1323 NC_012039.1 1272661 1273347 D formyltransferase 1272661..1273347 Campylobacter lari RM2100 7409829 YP_002575891.1 CDS Cla_1324 NC_012039.1 1273337 1274008 D Pfam match to PF02585.8 PIG-L; LmbE-like protein 1273337..1274008 Campylobacter lari RM2100 7409830 YP_002575892.1 CDS Cla_1325 NC_012039.1 1274005 1274469 D Pfam match to PF00583.15 Acetyltransf_1; N-acetyltransferase 1274005..1274469 Campylobacter lari RM2100 7409831 YP_002575893.1 CDS hisF2 NC_012039.1 1274437 1275168 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamide and glutamine to imidazole-glycerolphosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(1274437..1275168) Campylobacter lari RM2100 7409832 YP_002575894.1 CDS hisH NC_012039.1 1275178 1275780 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(1275178..1275780) Campylobacter lari RM2100 7409833 YP_002575895.1 CDS pseA NC_012039.1 1275777 1276913 R pseudaminic acid biosynthesis protein PseA complement(1275777..1276913) Campylobacter lari RM2100 7409834 YP_002575896.1 CDS Cla_1329 NC_012039.1 1277025 1277804 D Pfam match to PF01925.10 DUF81; hypothetical protein 1277025..1277804 Campylobacter lari RM2100 7409835 YP_002575897.1 CDS flhB NC_012039.1 1277796 1278872 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(1277796..1278872) Campylobacter lari RM2100 7409836 YP_002575898.1 CDS Cla_1331 NC_012039.1 1278941 1280977 R Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal; MCP-domain signal transduction protein complement(1278941..1280977) Campylobacter lari RM2100 7409837 YP_002575899.1 CDS ahpC NC_012039.1 1281152 1281748 R Pfam match to PF00578.12 AhpC-TSA; alkyl hydroperoxide reductase complement(1281152..1281748) Campylobacter lari RM2100 7409838 YP_002575900.1 CDS fdxA NC_012039.1 1281934 1282218 D Pfam match to PF00037.18 Fer4; ferredoxin 1281934..1282218 Campylobacter lari RM2100 7409839 YP_002575901.1 CDS ndk NC_012039.1 1282361 1282774 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1282361..1282774 Campylobacter lari RM2100 7409840 YP_002575902.1 CDS Cla_1335 NC_012039.1 1282774 1283127 D hypothetical protein 1282774..1283127 Campylobacter lari RM2100 7409841 YP_002575903.1 CDS rpmF NC_012039.1 1283142 1283288 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1283142..1283288 Campylobacter lari RM2100 7409842 YP_002575904.1 CDS plsX NC_012039.1 1283294 1284283 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1283294..1284283 Campylobacter lari RM2100 7409843 YP_002575905.1 CDS fabH3 NC_012039.1 1284270 1285253 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1284270..1285253 Campylobacter lari RM2100 7409844 YP_002575906.1 CDS motB NC_012039.1 1285270 1286004 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(1285270..1286004) Campylobacter lari RM2100 7409845 YP_002575907.1 CDS motA NC_012039.1 1286014 1286787 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(1286014..1286787) Campylobacter lari RM2100 7409846 YP_002575908.1 CDS polA NC_012039.1 1286800 1289439 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(1286800..1289439) Campylobacter lari RM2100 7409847 YP_002575909.1 CDS Cla_1342 NC_012039.1 1289572 1290924 D Pfam match to PF07690.7 MFS_1; major facilitator superfamily transporter 1289572..1290924 Campylobacter lari RM2100 7409848 YP_002575910.1 CDS Cla_1343 NC_012039.1 1290921 1291928 D Pfam match to PF01156.10 IU_nuc_hydro; inosine-uridine preferring nucleoside hydrolase 1290921..1291928 Campylobacter lari RM2100 7409849 YP_002575911.1 CDS Cla_1344 NC_012039.1 1291884 1292327 R hypothetical protein complement(1291884..1292327) Campylobacter lari RM2100 7409850 YP_002575912.1 CDS trpB NC_012039.1 1292602 1293777 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1292602..1293777 Campylobacter lari RM2100 7409851 YP_002575913.1 CDS Cla_1346 NC_012039.1 1294047 1295633 D Pfam match to PF02600.7 DsbB; disulfide bond formation protein, DsbB family 1294047..1295633 Campylobacter lari RM2100 7409852 YP_002575914.1 CDS uvrA NC_012039.1 1295668 1298493 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(1295668..1298493) Campylobacter lari RM2100 7409853 YP_002575915.1 CDS cstA NC_012039.1 1298702 1300807 D Pfam match to PF02554.5 CstA; carbon starvation protein A 1298702..1300807 Campylobacter lari RM2100 7409854 YP_002575916.1 CDS Cla_1349 NC_012039.1 1300804 1300995 D Pfam match to PF04328.4 DUF466; hypothetical protein 1300804..1300995 Campylobacter lari RM2100 7409855 YP_002575917.1 CDS serC NC_012039.1 1301059 1302135 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(1301059..1302135) Campylobacter lari RM2100 7409856 YP_002575918.1 CDS xseA NC_012039.1 1302148 1303311 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1302148..1303311) Campylobacter lari RM2100 7409857 YP_002575919.1 CDS ubiE NC_012039.1 1303308 1304009 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(1303308..1304009) Campylobacter lari RM2100 7409858 YP_002575920.1 CDS Cla_1353 NC_012039.1 1304013 1304765 R hypothetical protein complement(1304013..1304765) Campylobacter lari RM2100 7409859 YP_002575921.1 CDS perR NC_012039.1 1304777 1305193 R Pfam match to PF01475.10 FUR; peroxide stress regulator complement(1304777..1305193) Campylobacter lari RM2100 7409860 YP_002575922.1 CDS dxs NC_012039.1 1305277 1307106 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(1305277..1307106) Campylobacter lari RM2100 7409861 YP_002575923.1 CDS fliH NC_012039.1 1307103 1307921 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(1307103..1307921) Campylobacter lari RM2100 7409862 YP_002575924.1 CDS fliG NC_012039.1 1307926 1308954 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(1307926..1308954) Campylobacter lari RM2100 7409863 YP_002575925.1 CDS fliF NC_012039.1 1308954 1310639 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(1308954..1310639) Campylobacter lari RM2100 7409864 YP_002575926.1 CDS hisC NC_012039.1 1310654 1311745 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(1310654..1311745) Campylobacter lari RM2100 7409865 YP_002575927.1 CDS pheA NC_012039.1 1311735 1312808 R Pfam matches to PF01817.12 CM_2, and to PF00800.9 PDT; chorismate mutase complement(1311735..1312808) Campylobacter lari RM2100 7409866 YP_002575928.1 CDS Cla_1361 NC_012039.1 1312805 1313566 R HAD-superfamily hydrolase, subfamily IIA complement(1312805..1313566) Campylobacter lari RM2100 7409867 YP_002575929.1 CDS lysA NC_012039.1 1313568 1314773 R Pfam matches to PF02784.7 Orn_Arg_deC_N, and to PF00278.13 Orn_DAP_Arg_deC; diaminopimelate decarboxylase complement(1313568..1314773) Campylobacter lari RM2100 7409868 YP_002575930.1 CDS Cla_1363 NC_012039.1 1314787 1315848 R Pfam match to PF03739.5 YjgP_YjgQ; hypothetical protein complement(1314787..1315848) Campylobacter lari RM2100 7409869 YP_002575931.1 CDS pth NC_012039.1 1315850 1316389 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(1315850..1316389) Campylobacter lari RM2100 7409870 YP_002575932.1 CDS rplY NC_012039.1 1316391 1316927 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(1316391..1316927) Campylobacter lari RM2100 7409871 YP_002575933.1 CDS tal NC_012039.1 1316974 1317945 R Important for the balance of metabolites in the pentose-phosphate pathway; transaldolase complement(1316974..1317945) Campylobacter lari RM2100 7409872 YP_002575934.1 CDS serB NC_012039.1 1317942 1318568 R Pfam match to PF00702.17 Hydrolase; 3-phosphoserine phosphatase complement(1317942..1318568) Campylobacter lari RM2100 7409873 YP_002575935.1 CDS cheW NC_012039.1 1318568 1319086 R Pfam match to PF01584.10 CheW; chemotaxis protein CheW complement(1318568..1319086) Campylobacter lari RM2100 7409874 YP_002575936.1 CDS cheA NC_012039.1 1319091 1321403 R Pfam matches to PF01627.14 Hpt, and to PF02895.5 H-kinase_dim; chemotaxis protein CheA complement(1319091..1321403) Campylobacter lari RM2100 7409875 YP_002575937.1 CDS cheV NC_012039.1 1321406 1322359 R Pfam matches to PF01584.10 CheW, and to PF00072.15 Response_reg; chemotaxis protein CheV complement(1321406..1322359) Campylobacter lari RM2100 7409876 YP_002575938.1 CDS Cla_1371 NC_012039.1 1322359 1323087 R hypothetical protein complement(1322359..1323087) Campylobacter lari RM2100 7409877 YP_002575939.1 CDS greA NC_012039.1 1323091 1323576 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1323091..1323576) Campylobacter lari RM2100 7409878 YP_002575940.1 CDS lpxB NC_012039.1 1323586 1324680 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; ipid-A-disaccharide synthase complement(1323586..1324680) Campylobacter lari RM2100 7409879 YP_002575941.1 CDS cdtC NC_012039.1 1324759 1325331 R Pfam match to PF03498.5 CDtoxinA; cytolethal distending toxin, subunit CdtC complement(1324759..1325331) Campylobacter lari RM2100 7409880 YP_002575942.1 CDS cdtB NC_012039.1 1325341 1326120 R pseudogene; Pfam match to PF03372.14 Exo_endo_phos; cytolethal distending toxin, subunit CdtB complement(1325341..1326120) Campylobacter lari RM2100 7409881 YP_002575943.1 CDS cdtA NC_012039.1 1326145 1326957 R Pfam match to PF03498.5 CDtoxinA; cytolethal distending toxin, subunit CdtA complement(1326145..1326957) Campylobacter lari RM2100 7409882 YP_002575944.1 CDS pepT NC_012039.1 1327103 1328335 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1327103..1328335 Campylobacter lari RM2100 7409883 YP_002575945.1 CDS Cla_1378 NC_012039.1 1328352 1329644 R Pfam match to PF03606.6 DcuC; C4-dicarboxylate transporter complement(1328352..1329644) Campylobacter lari RM2100 7409884 YP_002575946.1 CDS pepE NC_012039.1 1329654 1330358 R alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E complement(1329654..1330358) Campylobacter lari RM2100 7409885 YP_002575947.1 CDS peb3 NC_012039.1 1330431 1331180 R hypothetical protein complement(1330431..1331180) Campylobacter lari RM2100 7409886 YP_002575948.1 CDS surE NC_012039.1 1331280 1332053 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1331280..1332053 Campylobacter lari RM2100 7409887 YP_002575949.1 CDS Cla_1382 NC_012039.1 1332046 1332699 D Pfam match to PF00899.12 ThiF; HesA/MoeB/ThiF family protein 1332046..1332699 Campylobacter lari RM2100 7409888 YP_002575950.1 CDS Cla_1383 NC_012039.1 1332747 1333493 D Pfam match to PF00905.13 Transpeptidase; beta-lactamase 1332747..1333493 Campylobacter lari RM2100 7409889 YP_002575951.1 CDS Cla_1384 NC_012039.1 1333506 1334327 D Pfam match to PF02517.7 Abi; metal-dependent membrane protease 1333506..1334327 Campylobacter lari RM2100 7409890 YP_002575952.1 CDS bioC NC_012039.1 1334324 1335025 R biotin synthesis protein BioC complement(1334324..1335025) Campylobacter lari RM2100 7409891 YP_002575953.1 CDS Cla_1386 NC_012039.1 1335022 1335636 R Pfam match to PF04301.4 DUF452; hypothetical protein complement(1335022..1335636) Campylobacter lari RM2100 7409892 YP_002575954.1 CDS bioF NC_012039.1 1335633 1336757 R Pfam match to PF00155.12 Aminotran_1_2; 8-amino-7-oxononanoate synthase complement(1335633..1336757) Campylobacter lari RM2100 7409893 YP_002575955.1 CDS Cla_1388 NC_012039.1 1336757 1337311 R Pfam matches to PF08238.3 Sel1, and to PF08238.3 Sel1; hypothetical protein complement(1336757..1337311) Campylobacter lari RM2100 7409894 YP_002575956.1 CDS bioA NC_012039.1 1337441 1338709 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1337441..1338709 Campylobacter lari RM2100 7409895 YP_002575957.1 CDS bioD NC_012039.1 1338683 1339255 R dethiobiotin synthetase complement(1338683..1339255) Campylobacter lari RM2100 7409896 YP_002575958.1 CDS Cla_1391 NC_012039.1 1339263 1339577 R Pfam match to PF00893.10 Multi_Drug_Res; multidrug resistance protein, SMR family complement(1339263..1339577) Campylobacter lari RM2100 7409897 YP_002575959.1 CDS Cla_1392 NC_012039.1 1339577 1339924 R Pfam match to PF00893.10 Multi_Drug_Res; multidrug resistance protein, SMR family complement(1339577..1339924) Campylobacter lari RM2100 7409898 YP_002575960.1 CDS ansB NC_012039.1 1340096 1341130 D Pfam match to PF01112.9 Asparaginase_2; L-asparaginase 1340096..1341130 Campylobacter lari RM2100 7409899 YP_002575961.1 CDS Cla_1394 NC_012039.1 1341131 1341553 R hypothetical protein complement(1341131..1341553) Campylobacter lari RM2100 7409900 YP_002575962.1 CDS carB NC_012039.1 1341550 1344813 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(1341550..1344813) Campylobacter lari RM2100 7409901 YP_002575963.1 CDS Cla_1396 NC_012039.1 1344895 1345635 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1344895..1345635) Campylobacter lari RM2100 7409902 YP_002575964.1 CDS mreB NC_012039.1 1345625 1346662 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(1345625..1346662) Campylobacter lari RM2100 7409903 YP_002575965.1 CDS clpX NC_012039.1 1346659 1347894 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1346659..1347894) Campylobacter lari RM2100 7409904 YP_002575966.1 CDS lpxA NC_012039.1 1347887 1348678 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(1347887..1348678) Campylobacter lari RM2100 7409906 YP_002575967.1 CDS fabZ NC_012039.1 1348678 1349118 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(1348678..1349118) Campylobacter lari RM2100 7409907 YP_002575968.1 CDS Cla_1401 NC_012039.1 1349187 1350260 R Pfam match to PF02677.5 DUF208; hypothetical protein complement(1349187..1350260) Campylobacter lari RM2100 7409908 YP_002575969.1 CDS bcp NC_012039.1 1350254 1350715 R Pfam match to PF00578.12 AhpC-TSA; bacterioferritin comigratory protein (AhpC/Tsa family) complement(1350254..1350715) Campylobacter lari RM2100 7409909 YP_002575970.1 CDS Cla_1403 NC_012039.1 1350712 1350918 R Pfam match to PF01361.12 Tautomerase; 4-oxalocrotonate tautomerase complement(1350712..1350918) Campylobacter lari RM2100 7409910 YP_002575971.1 CDS ilvE NC_012039.1 1351016 1351930 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1351016..1351930 Campylobacter lari RM2100 7409911 YP_002575972.1 CDS Cla_1405 NC_012039.1 1351943 1353013 D Pfam match to PF01145.16 Band_7; hypothetical protein 1351943..1353013 Campylobacter lari RM2100 7409912 YP_002575973.1 CDS Cla_1406 NC_012039.1 1353031 1353567 D hypothetical protein 1353031..1353567 Campylobacter lari RM2100 7409913 YP_002575974.1 CDS Cla_1407 NC_012039.1 1353567 1354097 D hypothetical protein 1353567..1354097 Campylobacter lari RM2100 7409914 YP_002575975.1 CDS purF NC_012039.1 1354101 1355441 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(1354101..1355441) Campylobacter lari RM2100 7409915 YP_002575976.1 CDS dapB NC_012039.1 1355442 1356170 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(1355442..1356170) Campylobacter lari RM2100 7409916 YP_002575977.1 CDS Cla_1410 NC_012039.1 1356241 1356540 R hypothetical protein complement(1356241..1356540) Campylobacter lari RM2100 7409917 YP_002575978.1 CDS trxB NC_012039.1 1356605 1357546 R Pfam match to PF07992.5 Pyr_redox_2; thioredoxin reductase complement(1356605..1357546) Campylobacter lari RM2100 7409918 YP_002575979.1 CDS trx NC_012039.1 1357662 1357976 R Pfam match to PF00085.11 Thioredoxin; thioredoxin complement(1357662..1357976) Campylobacter lari RM2100 7409919 YP_002575980.1 CDS Cla_1413 NC_012039.1 1358028 1358366 R Pfam match to PF02021.8 UPF0102; hypothetical protein complement(1358028..1358366) Campylobacter lari RM2100 7409920 YP_002575981.1 CDS hom NC_012039.1 1358367 1359620 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(1358367..1359620) Campylobacter lari RM2100 7409921 YP_002575982.1 CDS aspC NC_012039.1 1359622 1360824 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(1359622..1360824) Campylobacter lari RM2100 7409922 YP_002575983.1 CDS Cla_1416 NC_012039.1 1360837 1361643 R hypothetical protein complement(1360837..1361643) Campylobacter lari RM2100 7409923 YP_002575984.1 CDS Cla_1417 NC_012039.1 1361637 1362515 R hypothetical protein complement(1361637..1362515) Campylobacter lari RM2100 7409924 YP_002575985.1 CDS Cla_1418 NC_012039.1 1362508 1363188 R Pfam matches to PF08032.3 SpoU_sub_bind, and to PF00588.10 SpoU_methylase; rRNA methyltransferase, TrmH family complement(1362508..1363188) Campylobacter lari RM2100 7409925 YP_002575986.1 CDS Cla_1419 NC_012039.1 1363208 1364026 R Pfam match to PF00590.11 TP_methylase; tetrapyrrole methylase complement(1363208..1364026) Campylobacter lari RM2100 7409926 YP_002575987.1 CDS rpmE NC_012039.1 1364026 1364226 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(1364026..1364226) Campylobacter lari RM2100 7409927 YP_002575988.1 CDS Cla_1421 NC_012039.1 1364304 1364966 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1364304..1364966) Campylobacter lari RM2100 7409928 YP_002575989.1 CDS Cla_1422 NC_012039.1 1364966 1365376 R hypothetical protein complement(1364966..1365376) Campylobacter lari RM2100 7409929 YP_002575990.1 CDS Cla_1423 NC_012039.1 1365376 1365576 R hypothetical protein complement(1365376..1365576) Campylobacter lari RM2100 7409930 YP_002575991.1 CDS Cla_1424 NC_012039.1 1365576 1366160 R 6-pyruvoyl tetrahydrobiopterin synthase complement(1365576..1366160) Campylobacter lari RM2100 7409931 YP_002575992.1 CDS Cla_1425 NC_012039.1 1366157 1366906 R radical SAM domain protein complement(1366157..1366906) Campylobacter lari RM2100 7409932 YP_002575993.1 CDS moaA NC_012039.1 1366906 1367874 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(1366906..1367874) Campylobacter lari RM2100 7409933 YP_002575994.1 CDS Cla_1427 NC_012039.1 1367884 1368405 R hypothetical protein complement(1367884..1368405) Campylobacter lari RM2100 7409934 YP_002575995.1 CDS Cla_1428 NC_012039.1 1368398 1368901 R hypothetical protein complement(1368398..1368901) Campylobacter lari RM2100 7409935 YP_002575996.1 CDS ubiA NC_012039.1 1368892 1369767 R UbiA prenyltransferase catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase complement(1368892..1369767) Campylobacter lari RM2100 7409936 YP_002575997.1 CDS miaA NC_012039.1 1369837 1370712 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1369837..1370712 Campylobacter lari RM2100 7409937 YP_002575998.1 CDS pflA NC_012039.1 1370703 1373066 R paralysed flagella protein PflA complement(1370703..1373066) Campylobacter lari RM2100 7409938 YP_002575999.1 CDS nuoN NC_012039.1 1373091 1374488 R Pfam match to PF00361.11 Oxidored_q1; NADH-quinone oxidoreductase, N subunit complement(1373091..1374488) Campylobacter lari RM2100 7409939 YP_002576000.1 CDS nuoM NC_012039.1 1374488 1375957 R Pfam match to PF00361.11 Oxidored_q1; NADH-quinone oxidoreductase, M subunit complement(1374488..1375957) Campylobacter lari RM2100 7409940 YP_002576001.1 CDS nuoL NC_012039.1 1375959 1377761 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(1375959..1377761) Campylobacter lari RM2100 7409941 YP_002576002.1 CDS nuoK NC_012039.1 1377749 1378063 R Pfam match to PF00420.15 Oxidored_q2; NADH-quinone oxidoreductase, K subunit complement(1377749..1378063) Campylobacter lari RM2100 7409942 YP_002576003.1 CDS nuoJ NC_012039.1 1378060 1378566 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(1378060..1378566) Campylobacter lari RM2100 7409943 YP_002576004.1 CDS nuoI NC_012039.1 1378559 1379191 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(1378559..1379191) Campylobacter lari RM2100 7409944 YP_002576005.1 CDS nuoH NC_012039.1 1379200 1380198 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(1379200..1380198) Campylobacter lari RM2100 7409945 YP_002576006.1 CDS nuoG NC_012039.1 1380195 1382648 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G complement(1380195..1382648) Campylobacter lari RM2100 7409946 YP_002576007.1 CDS Cla_1440 NC_012039.1 1382645 1383358 R NADH-quinone oxidoreductase, F subunit complement(1382645..1383358) Campylobacter lari RM2100 7409947 YP_002576008.1 CDS Cla_1441 NC_012039.1 1383355 1383582 R NADH-quinone oxidoreductase, E subunit complement(1383355..1383582) Campylobacter lari RM2100 7409948 YP_002576009.1 CDS nuoD NC_012039.1 1383579 1384805 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(1383579..1384805) Campylobacter lari RM2100 7409949 YP_002576010.1 CDS nuoC NC_012039.1 1384807 1385601 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit C complement(1384807..1385601) Campylobacter lari RM2100 7409950 YP_002576011.1 CDS nuoB NC_012039.1 1385598 1386095 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(1385598..1386095) Campylobacter lari RM2100 7409951 YP_002576012.1 CDS nuoA NC_012039.1 1386074 1386493 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit A complement(1386074..1386493) Campylobacter lari RM2100 7409952 YP_002576013.1 CDS dppF NC_012039.1 1386614 1387282 R Pfam match to PF00005.18 ABC_tran; peptide ABC transporter ATP-binding protein complement(1386614..1387282) Campylobacter lari RM2100 7409953 YP_002576014.1 CDS dppD NC_012039.1 1387266 1388039 R Pfam match to PF00005.18 ABC_tran; peptide ABC transporter ATP-binding protein complement(1387266..1388039) Campylobacter lari RM2100 7409954 YP_002576015.1 CDS dppC NC_012039.1 1388036 1388812 R Pfam match to PF00528.13 BPD_transp_1; peptide ABC transporter permease complement(1388036..1388812) Campylobacter lari RM2100 7409955 YP_002576016.1 CDS dppB NC_012039.1 1388805 1389755 R Pfam match to PF00528.13 BPD_transp_1; peptide ABC transporter permease complement(1388805..1389755) Campylobacter lari RM2100 7409956 YP_002576017.1 CDS dppA NC_012039.1 1389755 1391290 R Pfam match to PF00496.13 SBP_bac_5; peptide ABC transporter substrate-binding protein complement(1389755..1391290) Campylobacter lari RM2100 7409957 YP_002576018.1 CDS Cla_1451 NC_012039.1 1391333 1393276 R Pfam match to PF02028.8 BCCT; BCCT (betaine/carnitine/choline) family transporter complement(1391333..1393276) Campylobacter lari RM2100 7409958 YP_002576019.1 CDS Cla_1452 NC_012039.1 1393475 1394125 R Pfam match to PF02589.6 DUF162; hypothetical protein complement(1393475..1394125) Campylobacter lari RM2100 7409959 YP_002576020.1 CDS Cla_1453 NC_012039.1 1394118 1395533 R Pfam match to PF02589.6 DUF162; iron-sulfur cluster binding protein complement(1394118..1395533) Campylobacter lari RM2100 7409960 YP_002576021.1 CDS Cla_1454 NC_012039.1 1395530 1396267 R Pfam matches to PF02754.7 CCG, and to PF02754.7 CCG; cysteine-rich domain protein complement(1395530..1396267) Campylobacter lari RM2100 7409961 YP_002576022.1 CDS lctP NC_012039.1 1396277 1397932 R Pfam match to PF02652.5 Lactate_perm; L-lactate permease complement(1396277..1397932) Campylobacter lari RM2100 7409962 YP_002576023.1 CDS Cla_1456 NC_012039.1 1398209 1399699 R hypothetical protein complement(1398209..1399699) Campylobacter lari RM2100 7409963 YP_002576024.1 CDS Cla_1457 NC_012039.1 1399699 1403469 R fusion of CJ0031 and CJ0032; type IIS restriction/modification enzyme complement(1399699..1403469) Campylobacter lari RM2100 7409964 YP_002576025.1 CDS torC NC_012039.1 1403667 1404245 D trimethylamine N-oxide reductase, cytochrome c-type subunit 1403667..1404245 Campylobacter lari RM2100 7409965 YP_002576026.1 CDS torA NC_012039.1 1404247 1406766 D Pfam matches to PF00384.13 Molybdopterin, and to PF01568.12 Molydop_binding; trimethylamine N-oxide reductase, catalytic subunit 1404247..1406766 Campylobacter lari RM2100 7409966 YP_002576027.1 CDS Cla_1460 NC_012039.1 1407505 1407807 R hypothetical protein complement(1407505..1407807) Campylobacter lari RM2100 7409967 YP_002576028.1 CDS Cla_1471 NC_012039.1 1415808 1416530 R Pfam match to PF03741.7 TerC; integral membrane protein, TerC family complement(1415808..1416530) Campylobacter lari RM2100 7409978 YP_002576029.1 CDS purN NC_012039.1 1416572 1417144 R Pfam match to PF00551.10 Formyl_trans_N; phosphoribosylglycinamide formyltransferase complement(1416572..1417144) Campylobacter lari RM2100 7409979 YP_002576030.1 CDS Cla_1473 NC_012039.1 1417135 1418481 R Pfam matches to PF03853.6 YjeF_N, and to PF01256.8 Carb_kinase; sugar kinase complement(1417135..1418481) Campylobacter lari RM2100 7409980 YP_002576031.1 CDS rmuC NC_012039.1 1418465 1419805 R Pfam match to PF02646.7 RmuC; DNA recombination protein RmuC complement(1418465..1419805) Campylobacter lari RM2100 7409981 YP_002576032.1 CDS Cla_1475 NC_012039.1 1419808 1420497 R Pfam match to PF01936.9 DUF88; hypothetical protein complement(1419808..1420497) Campylobacter lari RM2100 7409982 YP_002576033.1 CDS Cla_1476 NC_012039.1 1420506 1422014 R Pfam match to PF01078.12 Mg_chelatase; Mg chelatase-related protein complement(1420506..1422014) Campylobacter lari RM2100 7409983 YP_002576034.1 CDS def NC_012039.1 1422011 1422532 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1422011..1422532) Campylobacter lari RM2100 7409984 YP_002576035.1 CDS Cla_1478 NC_012039.1 1422529 1423569 R Pfam match to PF00990.12 GGDEF; diguanylate cyclase complement(1422529..1423569) Campylobacter lari RM2100 7409985 YP_002576036.1 CDS clpP NC_012039.1 1423584 1424174 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(1423584..1424174) Campylobacter lari RM2100 7409986 YP_002576037.1 CDS tig NC_012039.1 1424174 1425493 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(1424174..1425493) Campylobacter lari RM2100 7411226 YP_002576038.1 CDS folE NC_012039.1 1425603 1426175 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1425603..1426175 Campylobacter lari RM2100 7411227 YP_002576039.1 CDS fliI NC_012039.1 1426175 1427485 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1426175..1427485 Campylobacter lari RM2100 7411228 YP_002576040.1 CDS Cla_1483 NC_012039.1 1427539 1428027 D hypothetical protein 1427539..1428027 Campylobacter lari RM2100 7411229 YP_002576041.1 CDS Cla_1484 NC_012039.1 1428083 1428262 D hypothetical protein 1428083..1428262 Campylobacter lari RM2100 7411230 YP_002576042.1 CDS Cla_1485 NC_012039.1 1428341 1429486 D hypothetical protein 1428341..1429486 Campylobacter lari RM2100 7411231 YP_002576043.1 CDS iscS NC_012039.1 1429609 1430787 D Pfam match to PF00266.10 Aminotran_5; cysteine desulfurase 1429609..1430787 Campylobacter lari RM2100 7411232 YP_002576044.1 CDS iscU NC_012039.1 1430798 1431769 D Pfam matches to PF01592.7 NifU_N, and to PF04324.6 Fer2_BFD; NifU-like protein 1430798..1431769 Campylobacter lari RM2100 7411233 YP_002576045.1 CDS nhaA1 NC_012039.1 1431850 1433010 D Pfam match to PF06965.3 Na_H_antiport_1; Na+/H+ antiporter 1431850..1433010 Campylobacter lari RM2100 7411234 YP_002576046.1 CDS nhaA NC_012039.1 1433007 1434161 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1433007..1434161 Campylobacter lari RM2100 7411235 YP_002576047.1 CDS Cla_1491 NC_012039.1 1434510 1435136 R Pfam matches to PF03458.4 UPF0126, and to PF03458.4 UPF0126; hypothetical protein complement(1434510..1435136) Campylobacter lari RM2100 7411237 YP_002576048.1 CDS Cla_1492 NC_012039.1 1435170 1436213 R hypothetical protein complement(1435170..1436213) Campylobacter lari RM2100 7411238 YP_002576049.1 CDS aroC NC_012039.1 1436268 1437356 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1436268..1437356) Campylobacter lari RM2100 7411239 YP_002576050.1 CDS rnc NC_012039.1 1437353 1438021 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1437353..1438021) Campylobacter lari RM2100 7411240 YP_002576051.1 CDS rnhA NC_012039.1 1438014 1438454 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(1438014..1438454) Campylobacter lari RM2100 7411241 YP_002576052.1 CDS Cla_1496 NC_012039.1 1438451 1439413 R hypothetical protein complement(1438451..1439413) Campylobacter lari RM2100 7411242 YP_002576053.1 CDS dnaG NC_012039.1 1439488 1441275 D synthesizes RNA primers at the replication forks; DNA primase 1439488..1441275 Campylobacter lari RM2100 7411243 YP_002576054.1 CDS Cla_1498 NC_012039.1 1441341 1442324 D hypothetical protein 1441341..1442324 Campylobacter lari RM2100 7411244 YP_002576055.1 CDS Cla_1499 NC_012039.1 1442348 1444432 R Pfam matches to PF00672.16 HAMP, and to PF00015.12 MCPsignal; MCP-domain signal transduction protein complement(1442348..1444432) Campylobacter lari RM2100 7411245 YP_002576056.1 CDS pbpC2 NC_012039.1 1444608 1446812 R Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase; penicillin-binding protein 1C complement(1444608..1446812) Campylobacter lari RM2100 7411246 YP_002576057.1 CDS Cla_1501 NC_012039.1 1446809 1452094 R Pfam matches to PF01835.10 A2M_N, and to PF07703.5 A2M_N_2; alpha-2-macroglobulin complement(1446809..1452094) Campylobacter lari RM2100 7411247 YP_002576058.1 CDS Cla_1502 NC_012039.1 1452195 1452557 D hypothetical protein 1452195..1452557 Campylobacter lari RM2100 7411248 YP_002576059.1 CDS Cla_1503 NC_012039.1 1452589 1452903 D hypothetical protein 1452589..1452903 Campylobacter lari RM2100 7411249 YP_002576060.1 CDS Cla_1504 NC_012039.1 1452900 1454774 R Pfam match to PF00924.9 MS_channel; hypothetical protein complement(1452900..1454774) Campylobacter lari RM2100 7411250 YP_002576061.1 CDS cynT NC_012039.1 1454771 1455403 R Pfam match to PF00484.10 Pro_CA; carbonic anhydrase complement(1454771..1455403) Campylobacter lari RM2100 7411251 YP_002576062.1 CDS Cla_1506 NC_012039.1 1455563 1456264 D Pfam match to PF01027.11 UPF0005; hypothetical protein 1455563..1456264 Campylobacter lari RM2100 7411252 YP_002576063.1 CDS secG NC_012039.1 1456364 1456708 D Pfam match to PF03840.5 SecG; preprotein translocase subunit SecG 1456364..1456708 Campylobacter lari RM2100 7411253 YP_002576064.1 CDS frr NC_012039.1 1456719 1457276 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1456719..1457276 Campylobacter lari RM2100 7411254 YP_002576065.1 CDS pyrE NC_012039.1 1457279 1457887 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1457279..1457887 Campylobacter lari RM2100 7411255 YP_002576066.1 CDS Cla_1510 NC_012039.1 1457887 1458303 D Pfam match to PF06271.3 RDD; hypothetical protein 1457887..1458303 Campylobacter lari RM2100 7411256 YP_002576067.1 CDS nrdF NC_012039.1 1458300 1459322 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1458300..1459322 Campylobacter lari RM2100 7411257 YP_002576068.1 CDS Cla_1512 NC_012039.1 1459624 1461141 D Pfam match to PF02600.7 DsbB; disulfide bond formation protein, DsbB family 1459624..1461141 Campylobacter lari RM2100 7411258 YP_002576069.1 CDS pcm NC_012039.1 1461229 1461861 D catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 1461229..1461861 Campylobacter lari RM2100 7411259 YP_002576070.1 CDS Cla_1514 NC_012039.1 1461952 1462692 D Pfam match to PF00194.12 Carb_anhydrase; carbonic anhydrase 1461952..1462692 Campylobacter lari RM2100 7411260 YP_002576071.1 CDS Cla_1515 NC_012039.1 1462704 1463336 R hypothetical protein complement(1462704..1463336) Campylobacter lari RM2100 7411261 YP_002576072.1 CDS typA NC_012039.1 1463336 1465144 R Pfam matches to PF00009.18 GTP_EFTU, and to PF03144.16 GTP_EFTU_D2; GTP-binding protein TypA complement(1463336..1465144) Campylobacter lari RM2100 7411262 YP_002576073.1 CDS Cla_1517 NC_012039.1 1465272 1465610 D hypothetical protein 1465272..1465610 Campylobacter lari RM2100 7411263 YP_002576074.1 CDS Cla_1518 NC_012039.1 1465614 1467296 D Pfam match to PF02120.7 Flg_hook; hypothetical protein 1465614..1467296 Campylobacter lari RM2100 7411264 YP_002576075.1 CDS flgD NC_012039.1 1467347 1468354 D Pfam match to PF03963.5 FlgD; flagellar hook assembly protein FlgD 1467347..1468354 Campylobacter lari RM2100 7411265 YP_002576076.1 CDS flgE2 NC_012039.1 1468359 1469984 D Pfam match to PF06429.4 DUF1078; flagellar hook protein FlgE 1468359..1469984 Campylobacter lari RM2100 7411266 YP_002576077.1 CDS Cla_1521 NC_012039.1 1469995 1470438 R hypothetical protein complement(1469995..1470438) Campylobacter lari RM2100 7411267 YP_002576078.1 CDS Cla_1522 NC_012039.1 1470591 1471817 R hypothetical protein complement(1470591..1471817) Campylobacter lari RM2100 7411268 YP_002576079.1 CDS fic NC_012039.1 1471983 1472591 R Pfam match to PF02661.9 Fic; cell filamentation protein complement(1471983..1472591) Campylobacter lari RM2100 7411269 YP_002576080.1 CDS Cla_1524 NC_012039.1 1472654 1473634 R Pfam match to PF00005.18 ABC_tran; ABC transporter ATP-binding protein complement(1472654..1473634) Campylobacter lari RM2100 7411270 YP_002576081.1 CDS Cla_1525 NC_012039.1 1473637 1475217 R Pfam matches to PF00528.13 BPD_transp_1, and to PF00528.13 BPD_transp_1; ABC transporter permease complement(1473637..1475217) Campylobacter lari RM2100 7411271 YP_002576082.1 CDS Cla_1526 NC_012039.1 1475235 1476239 R Pfam match to PF01547.16 SBP_bac_1; ABC transporter substrate-binding protein complement(1475235..1476239) Campylobacter lari RM2100 7411272 YP_002576083.1 CDS Cla_1527 NC_012039.1 1476429 1476857 D Pfam match to PF00042.13 Globin; flavohemoprotein 1476429..1476857 Campylobacter lari RM2100 7411273 YP_002576084.1 CDS Cla_1528 NC_012039.1 1476879 1478507 R efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane component/ATP-binding component complement(1476879..1478507) Campylobacter lari RM2100 7411274 YP_002576085.1 CDS Cla_1530 NC_012039.1 1481415 1484672 D Pfam match to PF05860.4 Haemagg_act; hemagglutination domain protein 1481415..1484672 Campylobacter lari RM2100 7411276 YP_002576086.1 CDS Cla_1531 NC_012039.1 1484741 1486534 D hypothetical protein 1484741..1486534 Campylobacter lari RM2100 7411277 YP_002576087.1 CDS ctsG NC_012039.1 1486531 1487103 R Pfam match to PF07963.3 N_methyl; transformation system protein CtsG complement(1486531..1487103) Campylobacter lari RM2100 7411278 YP_002576088.1 CDS gcp NC_012039.1 1487100 1488107 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(1487100..1488107) Campylobacter lari RM2100 7411279 YP_002576089.1 CDS Cla_1534 NC_012039.1 1488104 1489492 R hypothetical protein complement(1488104..1489492) Campylobacter lari RM2100 7411280 YP_002576090.1 CDS dxr NC_012039.1 1489489 1490568 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(1489489..1490568) Campylobacter lari RM2100 7411281 YP_002576091.1 CDS cdsA NC_012039.1 1490565 1491293 R Pfam match to PF01148.11 CTP_transf_1; phosphatidate cytidylyltransferase complement(1490565..1491293) Campylobacter lari RM2100 7411282 YP_002576092.1 CDS Cla_1537 NC_012039.1 1491305 1491625 R hypothetical protein complement(1491305..1491625) Campylobacter lari RM2100 7411283 YP_002576093.1 CDS Cla_1538 NC_012039.1 1491628 1492932 R Pfam match to PF05670.4 DUF814; hypothetical protein complement(1491628..1492932) Campylobacter lari RM2100 7411284 YP_002576094.1 CDS mobA NC_012039.1 1492974 1493552 D molybdopterin-guanine dinucleotide biosynthesis protein A 1492974..1493552 Campylobacter lari RM2100 7411285 YP_002576095.1 CDS Cla_1540 NC_012039.1 1493571 1494923 R Pfam match to PF03553.5 Na_H_antiporter; Na+/H+ antiporter complement(1493571..1494923) Campylobacter lari RM2100 7411286 YP_002576096.1 CDS ilvD NC_012039.1 1495058 1496734 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1495058..1496734 Campylobacter lari RM2100 7411287 YP_002576097.1 CDS Cla_1546 NC_012039.1 1497363 1499345 D Pfam matches to PF02743.9 Cache_1, and to PF00015.12 MCPsignal; MCP-domain signal transduction protein 1497363..1499345 Campylobacter lari RM2100 7411292 YP_002576098.1 CDS Cla_1547 NC_012039.1 1499476 1501449 D Pfam match to PF00015.12 MCPsignal; MCP-domain signal transduction protein 1499476..1501449 Campylobacter lari RM2100 7411293 YP_002576099.1 CDS Cla_1548 NC_012039.1 1501484 1501903 R hypothetical protein complement(1501484..1501903) Campylobacter lari RM2100 7411294 YP_002576100.1 CDS Cla_1549 NC_012039.1 1501966 1503678 R Pfam match to PF00004.20 AAA; ATPase AAA complement(1501966..1503678) Campylobacter lari RM2100 7411295 YP_002576101.1 CDS Cla_1550 NC_012039.1 1503687 1504166 R hypothetical protein complement(1503687..1504166) Campylobacter lari RM2100 7411296 YP_002576102.1 CDS Cla_1551 NC_012039.1 1504163 1504654 R nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein complement(1504163..1504654) Campylobacter lari RM2100 7411297 YP_002576103.1 CDS Cla_1552 NC_012039.1 1504644 1505576 R Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase complement(1504644..1505576) Campylobacter lari RM2100 7411298 YP_002576104.1 CDS Cla_1553 NC_012039.1 1505576 1506748 R Pfam match to PF03738.5 GSP_synth; glutathionylspermidine synthase complement(1505576..1506748) Campylobacter lari RM2100 7411299 YP_002576105.1 CDS Cla_1554 NC_012039.1 1506758 1507384 R hypothetical protein complement(1506758..1507384) Campylobacter lari RM2100 7411300 YP_002576106.1 CDS Cla_1555 NC_012039.1 1507457 1508062 R Pfam match to PF01810.9 LysE; LysE family amino-acid efflux protein complement(1507457..1508062) Campylobacter lari RM2100 7411301 YP_002576107.1 CDS rpsU NC_012039.1 1508107 1508331 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1508107..1508331) Campylobacter lari RM2100 7411302 YP_002576108.1 CDS Cla_1557 NC_012039.1 1508505 1509881 D ferredoxin-like protein 1508505..1509881 Campylobacter lari RM2100 7411303 YP_002576109.1 CDS cmeR NC_012039.1 1509878 1510504 D Pfam match to PF00440.14 TetR_N; TetR family transcriptional regulator 1509878..1510504 Campylobacter lari RM2100 7411304 YP_002576110.1 CDS cmeA NC_012039.1 1510587 1511684 D Pfam match to PF00529.11 HlyD; RND efflux system, membrane fusion protein CmeA 1510587..1511684 Campylobacter lari RM2100 7411305 YP_002576111.1 CDS cmeB NC_012039.1 1511684 1514806 D Pfam match to PF00873.10 ACR_tran; RND efflux system, inner membrane transporter CmeB 1511684..1514806 Campylobacter lari RM2100 7411306 YP_002576112.1 CDS cmeC NC_012039.1 1514799 1516241 D Pfam matches to PF02321.9 OEP, and to PF02321.9 OEP; RND efflux system, outer membrane lipoprotein CmeC 1514799..1516241 Campylobacter lari RM2100 7411307 YP_002576113.1 CDS Cla_1562 NC_012039.1 1516258 1516479 R hypothetical protein complement(1516258..1516479) Campylobacter lari RM2100 7411308 YP_002576114.1 CDS Cla_1563 NC_012039.1 1516527 1517858 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1516527..1517858 Campylobacter lari RM2100 7411132 YP_002576115.1 CDS Cla_1564 NC_012039.1 1517916 1518593 D Pfam match to PF08241.3 Methyltransf_11; methyltransferase 1517916..1518593 Campylobacter lari RM2100 7411133 YP_002576116.1 CDS Cla_1565 NC_012039.1 1518614 1519063 R Pfam match to PF03653.4 UPF0093; hypothetical protein complement(1518614..1519063) Campylobacter lari RM2100 7411134 YP_002576117.1 CDS lspA NC_012039.1 1519044 1519511 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(1519044..1519511) Campylobacter lari RM2100 7411135 YP_002576118.1 CDS glmM NC_012039.1 1519504 1520841 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(1519504..1520841) Campylobacter lari RM2100 7411136 YP_002576119.1 CDS Cla_1568 NC_012039.1 1520973 1522148 D hypothetical protein 1520973..1522148 Campylobacter lari RM2100 7411137 YP_002576120.1 CDS Cla_1569 NC_012039.1 1522145 1523335 D Pfam match to PF00004.20 AAA; recombination factor protein RarA 1522145..1523335 Campylobacter lari RM2100 7411138 YP_002576121.1 CDS Cla_1571 NC_012039.1 1523484 1524104 R Pfam matches to PF03713.4 DUF305, and to PF03713.4 DUF305; hypothetical protein complement(1523484..1524104) Campylobacter lari RM2100 7411140 YP_002576122.1 CDS Cla_1572 NC_012039.1 1524226 1524858 D hypothetical protein 1524226..1524858 Campylobacter lari RM2100 7411141 YP_002576123.1 CDS ruvC NC_012039.1 1524861 1525337 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(1524861..1525337) Campylobacter lari RM2100 7411142 YP_002576124.1 CDS Cla_a042 NC_012040.1 1 46201 D similar to Campylobacter jejuni 81-176 pTet protein Cpp18; hypothetical protein join(45672..46201,1) Campylobacter lari RM2100 7409819 YP_002576125.1 CDS Cla_a001 NC_012040.1 1 1317 D similar to Campylobacter jejuni 81-176 pTet protein Cpp17 Pfam match to PF03432.5 Relaxase; nickase/relaxase 1..1317 Campylobacter lari RM2100 7409818 YP_002576126.1 CDS Cla_a002 NC_012040.1 1391 7195 R similar to Campylobacter jejuni 81-176 pTet protein Cpp14 Pfam matches to PF02384.7 N6_Mtase, and to PF00176.14 SNF2_N; DNA methylase/helicase complement(1391..7195) Campylobacter lari RM2100 7409778 YP_002576127.1 CDS Cla_a003 NC_012040.1 7383 7985 R similar to Campylobacter jejuni 81-176 pTet protein Cpp27 Pfam match to PF00239.12 Resolvase; site-specific recombinase/resolvase complement(7383..7985) Campylobacter lari RM2100 7409779 YP_002576128.1 CDS Cla_a004 NC_012040.1 8107 8331 R hypothetical protein complement(8107..8331) Campylobacter lari RM2100 7409780 YP_002576129.1 CDS Cla_a005 NC_012040.1 8336 9004 R similar to Campylobacter jejuni 81-176 pVir protein Cjp26 Pfam match to PF01656.14 CbiA; plasmid partitioning protein complement(8336..9004) Campylobacter lari RM2100 7409781 YP_002576130.1 CDS Cla_a006 NC_012040.1 9272 10090 R hypothetical protein complement(9272..10090) Campylobacter lari RM2100 7409782 YP_002576131.1 CDS Cla_a007 NC_012040.1 10559 10894 R hypothetical protein complement(10559..10894) Campylobacter lari RM2100 7409783 YP_002576132.1 CDS Cla_a008 NC_012040.1 11349 11609 D Pfam match to PF04956.4 TrbC; attachment mediating protein TraC/VirB2 11349..11609 Campylobacter lari RM2100 7409784 YP_002576133.1 CDS Cla_a009 NC_012040.1 11616 14390 D similar to Campylobacter jejuni 81-176 pTet protein CmgB3/4 Pfam matches to PF05101.4 VirB3, and to PF03135.5 CagE_TrbE_VirB; secretion/conjugal transfer ATPase VirB3/4 11616..14390 Campylobacter lari RM2100 7409785 YP_002576134.1 CDS Cla_a010 NC_012040.1 14387 15379 D similar to Campylobacter jejuni 81-176 pTet protein CmgB5 Pfam match to PF07996.2 T4SS; conjugal transfer protein VirB5 14387..15379 Campylobacter lari RM2100 7409786 YP_002576135.1 CDS Cla_a011 NC_012040.1 15393 15977 D similar to Campylobacter jejuni 81-176 pTet protein Cpp32 Pfam match to PF09669.1 Phage_pRha; putative antirepressor, Rha family 15393..15977 Campylobacter lari RM2100 7409787 YP_002576136.1 CDS Cla_a012 NC_012040.1 16476 16769 D similar to Campylobacter jejuni 81-176 pTet protein Cpp33; hypothetical protein 16476..16769 Campylobacter lari RM2100 7409788 YP_002576137.1 CDS Cla_a013 NC_012040.1 16766 17317 D Pfam match to PF02498.8 Bro-N; putative antirepressor, BRO family 16766..17317 Campylobacter lari RM2100 7409789 YP_002576138.1 CDS Cla_a014 NC_012040.1 17607 18617 D similar to Campylobacter jejuni 81-176 pTet protein CmgB6 Pfam match to PF04610.5 TrbL; conjugal transfer protein TrbL/VirB6 17607..18617 Campylobacter lari RM2100 7409790 YP_002576139.1 CDS Cla_a015 NC_012040.1 18607 19068 D hypothetical protein 18607..19068 Campylobacter lari RM2100 7409791 YP_002576140.1 CDS Cla_a016 NC_012040.1 19359 19967 D similar to Campylobacter jejuni 81-176 pTet protein CmgB8 Pfam match to PF04335.4 VirB8; conjugal transfer protein TraJ/VirB8 19359..19967 Campylobacter lari RM2100 7409792 YP_002576141.1 CDS Cla_a017 NC_012040.1 19964 20899 D similar to Campylobacter jejuni 81-176 pTet protein CmgB9 Pfam match to PF03524.6 CagX; conjugal transfer protein TraK/VirB9 19964..20899 Campylobacter lari RM2100 7409793 YP_002576142.1 CDS Cla_a018 NC_012040.1 20896 22071 D similar to Campylobacter jejuni 81-176 pTet protein CmgB10 Pfam match to PF03743.5 TrbI; conjugal transfer protein TrbI/VirB10 20896..22071 Campylobacter lari RM2100 7409794 YP_002576143.1 CDS Cla_a019 NC_012040.1 22071 23072 D similar to Campylobacter jejuni 81-176 pTet protein CmgB11 Pfam match to PF00437.11 GSPII_E; conjugal transfer protein VirB11 22071..23072 Campylobacter lari RM2100 7409795 YP_002576144.1 CDS Cla_a020 NC_012040.1 23062 23637 D hypothetical protein 23062..23637 Campylobacter lari RM2100 7409796 YP_002576145.1 CDS Cla_a021 NC_012040.1 23627 25423 D similar to Campylobacter jejuni 81-176 pTet protein CmgD4 Pfam match to PF02534.5 TraG; conjugal transfer protein TraG/VirD4 23627..25423 Campylobacter lari RM2100 7409797 YP_002576146.1 CDS Cla_a022 NC_012040.1 25407 25844 D similar to Campylobacter jejuni 81-176 pTet protein Cpp44; hypothetical protein 25407..25844 Campylobacter lari RM2100 7409798 YP_002576147.1 CDS Cla_a023 NC_012040.1 25965 26642 D similar to Campylobacter jejuni 81-176 pTet protein Cpp45 Pfam match to PF07424.2 TrbM; TrbM mating pair formation protein-like protein 25965..26642 Campylobacter lari RM2100 7409799 YP_002576148.1 CDS Cla_a024 NC_012040.1 26635 27504 D similar to Campylobacter jejuni 81-176 pTet protein Cpp46; hypothetical protein 26635..27504 Campylobacter lari RM2100 7409800 YP_002576149.1 CDS Cla_a025 NC_012040.1 27588 28256 D similar to Campylobacter jejuni 81-176 pTet protein Cpp47; hypothetical protein 27588..28256 Campylobacter lari RM2100 7409801 YP_002576150.1 CDS Cla_a026 NC_012040.1 28310 30340 D similar to Campylobacter jejuni 81-176 pTet protein Cpp49 Pfam matches to PF01751.13 Toprim, and to PF01131.11 Topoisom_bac; DNA topoisomerase III TraE 28310..30340 Campylobacter lari RM2100 7409802 YP_002576151.1 CDS Cla_a027 NC_012040.1 30353 30763 D Pfam match to PF00436.16 SSB; single-stranded DNA binding protein 30353..30763 Campylobacter lari RM2100 7409803 YP_002576152.1 CDS Cla_a028 NC_012040.1 30763 35142 D putative adhesin/invasin 30763..35142 Campylobacter lari RM2100 7409804 YP_002576153.1 CDS Cla_a029 NC_012040.1 35238 35627 R hypothetical protein complement(35238..35627) Campylobacter lari RM2100 7409805 YP_002576154.1 CDS Cla_a030 NC_012040.1 35704 36192 R hypothetical protein complement(35704..36192) Campylobacter lari RM2100 7409806 YP_002576155.1 CDS Cla_a031 NC_012040.1 36974 37609 D Pfam match to PF00239.12 Resolvase; site-specific recombinase/resolvase 36974..37609 Campylobacter lari RM2100 7409807 YP_002576156.1 CDS Cla_a032 NC_012040.1 37764 38405 D putative DNA primase TraC 37764..38405 Campylobacter lari RM2100 7409808 YP_002576157.1 CDS Cla_a033 NC_012040.1 38494 38802 D hypothetical protein 38494..38802 Campylobacter lari RM2100 7409809 YP_002576158.1 CDS Cla_a034 NC_012040.1 38950 40185 R similar to Campylobacter jejuni 81-176 pTet protein Cpp22 Pfam match to PF01751.13 Toprim; DNA primase TraC complement(38950..40185) Campylobacter lari RM2100 7409810 YP_002576159.1 CDS Cla_a035 NC_012040.1 40274 40933 R similar to Campylobacter jejuni 81-176 pTet protein Cpp21; hypothetical protein complement(40274..40933) Campylobacter lari RM2100 7409811 YP_002576160.1 CDS Cla_a036 NC_012040.1 40992 41405 R Pfam match to PF01850.12 PIN; PIN domain protein complement(40992..41405) Campylobacter lari RM2100 7409812 YP_002576161.1 CDS Cla_a037 NC_012040.1 41402 42301 R hypothetical protein complement(41402..42301) Campylobacter lari RM2100 7409813 YP_002576162.1 CDS Cla_a038 NC_012040.1 42863 43171 D identical to Cla_a033; hypothetical protein 42863..43171 Campylobacter lari RM2100 7409814 YP_002576163.1 CDS Cla_a039 NC_012040.1 43319 44392 R similar to Campylobacter jejuni 81-176 pTet protein Cpp22 Pfam match to PF01751.13 Toprim; DNA primase TraC complement(43319..44392) Campylobacter lari RM2100 7409815 YP_002576164.1 CDS Cla_a040 NC_012040.1 44411 45121 R similar to Campylobacter jejuni 81-176 pTet protein Cpp20; hypothetical protein complement(44411..45121) Campylobacter lari RM2100 7409816 YP_002576165.1 CDS Cla_a041 NC_012040.1 45193 45465 R similar to Campylobacter jejuni 81-176 pTet protein Cpp19; hypothetical protein complement(45193..45465) Campylobacter lari RM2100 7409817 Cla_0046 tRNA Cla_0046 NC_012039.1 46482 46553 D tRNA-Glu 46482..46553 Campylobacter lari RM2100 7410607 Cla_0057 tRNA Cla_0057 NC_012039.1 56601 56673 R tRNA-Ala complement(56601..56673) Campylobacter lari RM2100 7410618 Cla_0134 tRNA Cla_0134 NC_012039.1 115364 115448 D tRNA-Ser 115364..115448 Campylobacter lari RM2100 7411366 Cla_0136 tRNA Cla_0136 NC_012039.1 116219 116292 D tRNA-Met 116219..116292 Campylobacter lari RM2100 7411368 Cla_0289 tRNA Cla_0289 NC_012039.1 257962 258034 D tRNA-Phe 257962..258034 Campylobacter lari RM2100 7410197 Cla_0367 tRNA Cla_0367 NC_012039.1 343445 343538 D tRNA-Sec 343445..343538 Campylobacter lari RM2100 7410275 Cla_0436 tRNA Cla_0436 NC_012039.1 412298 412370 D tRNA-Thr 412298..412370 Campylobacter lari RM2100 7411173 Cla_0437 tRNA Cla_0437 NC_012039.1 412421 412503 D tRNA-Tyr 412421..412503 Campylobacter lari RM2100 7411174 Cla_0438 tRNA Cla_0438 NC_012039.1 412514 412587 D tRNA-Gly 412514..412587 Campylobacter lari RM2100 7411175 Cla_0439 tRNA Cla_0439 NC_012039.1 412697 412768 D tRNA-Thr 412697..412768 Campylobacter lari RM2100 7411176 Cla_0442 tRNA Cla_0442 NC_012039.1 414256 414328 D tRNA-Trp 414256..414328 Campylobacter lari RM2100 7411179 Cla_0461 tRNA Cla_0461 NC_012039.1 438121 438193 D tRNA-Ala 438121..438193 Campylobacter lari RM2100 7411198 Cla_0462 tRNA Cla_0462 NC_012039.1 438203 438276 D tRNA-Ile 438203..438276 Campylobacter lari RM2100 7411199 Cla_0509 tRNA Cla_0509 NC_012039.1 487342 487414 D tRNA-Lys 487342..487414 Campylobacter lari RM2100 7411069 Cla_0510 tRNA Cla_0510 NC_012039.1 487431 487503 D tRNA-Val 487431..487503 Campylobacter lari RM2100 7411070 Cla_0511 tRNA Cla_0511 NC_012039.1 487526 487599 D tRNA-Asp 487526..487599 Campylobacter lari RM2100 7411071 Cla_0512 tRNA Cla_0512 NC_012039.1 487605 487677 D tRNA-Lys 487605..487677 Campylobacter lari RM2100 7411072 Cla_0513 tRNA Cla_0513 NC_012039.1 487694 487766 D tRNA-Val 487694..487766 Campylobacter lari RM2100 7411073 Cla_0514 tRNA Cla_0514 NC_012039.1 487789 487862 D tRNA-Asp 487789..487862 Campylobacter lari RM2100 7411074 Cla_0515 tRNA Cla_0515 NC_012039.1 487868 487940 D tRNA-Lys 487868..487940 Campylobacter lari RM2100 7411075 Cla_0516 tRNA Cla_0516 NC_012039.1 487949 488021 D tRNA-Glu 487949..488021 Campylobacter lari RM2100 7411076 Cla_0518 tRNA Cla_0518 NC_012039.1 490323 490395 D tRNA-Ala 490323..490395 Campylobacter lari RM2100 7411078 Cla_0519 tRNA Cla_0519 NC_012039.1 490405 490478 D tRNA-Ile 490405..490478 Campylobacter lari RM2100 7411079 Cla_0531 tRNA Cla_0531 NC_012039.1 505132 505203 D tRNA-Asn 505132..505203 Campylobacter lari RM2100 7411091 Cla_0586 tRNA Cla_0586 NC_012039.1 559890 559963 R tRNA-Arg complement(559890..559963) Campylobacter lari RM2100 7410652 Cla_0596 tRNA Cla_0596 NC_012039.1 568748 568821 D tRNA-Arg 568748..568821 Campylobacter lari RM2100 7410662 Cla_0605 tRNA Cla_0605 NC_012039.1 577487 577558 D tRNA-Gln 577487..577558 Campylobacter lari RM2100 7410671 Cla_0606 tRNA Cla_0606 NC_012039.1 577575 577647 D tRNA-Met 577575..577647 Campylobacter lari RM2100 7410672 Cla_0607 tRNA Cla_0607 NC_012039.1 577898 577971 R tRNA-Met complement(577898..577971) Campylobacter lari RM2100 7410673 Cla_0739 tRNA Cla_0739 NC_012039.1 706589 706660 D tRNA-Gly 706589..706660 Campylobacter lari RM2100 7410073 Cla_0823 tRNA Cla_0823 NC_012039.1 789688 789771 D tRNA-Leu 789688..789771 Campylobacter lari RM2100 7410403 Cla_1202 tRNA Cla_1202 NC_012039.1 1157558 1157640 D tRNA-Leu 1157558..1157640 Campylobacter lari RM2100 7410366 Cla_1265 tRNA Cla_1265 NC_012039.1 1220236 1220322 D tRNA-Ser 1220236..1220322 Campylobacter lari RM2100 7410998 Cla_1463 tRNA Cla_1463 NC_012039.1 1412204 1412277 R tRNA-Ile complement(1412204..1412277) Campylobacter lari RM2100 7409970 Cla_1464 tRNA Cla_1464 NC_012039.1 1412287 1412359 R tRNA-Ala complement(1412287..1412359) Campylobacter lari RM2100 7409971 Cla_1466 tRNA Cla_1466 NC_012039.1 1415286 1415367 R tRNA-Leu complement(1415286..1415367) Campylobacter lari RM2100 7409973 Cla_1467 tRNA Cla_1467 NC_012039.1 1415376 1415449 R tRNA-Arg complement(1415376..1415449) Campylobacter lari RM2100 7409974 Cla_1468 tRNA Cla_1468 NC_012039.1 1415478 1415551 R tRNA-Arg complement(1415478..1415551) Campylobacter lari RM2100 7409975 Cla_1469 tRNA Cla_1469 NC_012039.1 1415558 1415631 R tRNA-His complement(1415558..1415631) Campylobacter lari RM2100 7409976 Cla_1470 tRNA Cla_1470 NC_012039.1 1415648 1415722 R tRNA-Pro complement(1415648..1415722) Campylobacter lari RM2100 7409977 Cla_1490 tRNA Cla_1490 NC_012039.1 1434218 1434289 D tRNA-Glu 1434218..1434289 Campylobacter lari RM2100 7411236 Cla_1542 tRNA Cla_1542 NC_012039.1 1496813 1496897 R tRNA-Ser complement(1496813..1496897) Campylobacter lari RM2100 7411288 Cla_1543 tRNA Cla_1543 NC_012039.1 1496934 1497004 R tRNA-Cys complement(1496934..1497004) Campylobacter lari RM2100 7411289 Cla_1544 tRNA Cla_1544 NC_012039.1 1497024 1497109 R tRNA-Leu complement(1497024..1497109) Campylobacter lari RM2100 7411290 Cla_1545 tRNA Cla_1545 NC_012039.1 1497123 1497194 R tRNA-Gly complement(1497123..1497194) Campylobacter lari RM2100 7411291 Cla_1570 tRNA Cla_1570 NC_012039.1 1523383 1523455 D tRNA-Val 1523383..1523455 Campylobacter lari RM2100 7411139 Cla_0460 rRNA Cla_0460 NC_012039.1 436356 437868 D 16S ribosomal RNA 436356..437868 Campylobacter lari RM2100 7411197 Cla_0463 rRNA Cla_0463 NC_012039.1 438706 441596 D 23S ribosomal RNA 438706..441596 Campylobacter lari RM2100 7411200 Cla_0464 rRNA Cla_0464 NC_012039.1 441876 441995 D 5S ribosomal RNA 441876..441995 Campylobacter lari RM2100 7411201 Cla_0517 rRNA Cla_0517 NC_012039.1 488558 490070 D 16S ribosomal RNA 488558..490070 Campylobacter lari RM2100 7411077 Cla_0520 rRNA Cla_0520 NC_012039.1 490908 493798 D 23S ribosomal RNA 490908..493798 Campylobacter lari RM2100 7411080 Cla_0521 rRNA Cla_0521 NC_012039.1 494078 494197 D 5S ribosomal RNA 494078..494197 Campylobacter lari RM2100 7411081 Cla_1461 rRNA Cla_1461 NC_012039.1 1408485 1408604 R 5S ribosomal RNA complement(1408485..1408604) Campylobacter lari RM2100 7409968 Cla_1462 rRNA Cla_1462 NC_012039.1 1408884 1411774 R 23S ribosomal RNA complement(1408884..1411774) Campylobacter lari RM2100 7409969 Cla_1465 rRNA Cla_1465 NC_012039.1 1412612 1414124 R 16S ribosomal RNA complement(1412612..1414124) Campylobacter lari RM2100 7409972