-- dump date 20240506_001103 -- class Genbank::Contig -- table contig_comment -- id comment NC_010830.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001102.1.REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias HornREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net)REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net)REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-StanfordREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNLREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376)REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copiesREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file fromREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated regionREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file fromREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated regionREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file fromREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443.REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274 Genes (RNA) :: 40REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274 Genes (RNA) :: 40 rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274 Genes (RNA) :: 40 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274 Genes (RNA) :: 40 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274 Genes (RNA) :: 40 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274 Genes (RNA) :: 40 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 2 Pseudo Genes (total) :: 151REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274 Genes (RNA) :: 40 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 2 Pseudo Genes (total) :: 151 CDSs (without protein) :: 151REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274 Genes (RNA) :: 40 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 2 Pseudo Genes (total) :: 151 CDSs (without protein) :: 151 Pseudo Genes (ambiguous residues) :: 0 of 151REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274 Genes (RNA) :: 40 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 2 Pseudo Genes (total) :: 151 CDSs (without protein) :: 151 Pseudo Genes (ambiguous residues) :: 0 of 151 Pseudo Genes (frameshifted) :: 78 of 151REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274 Genes (RNA) :: 40 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 2 Pseudo Genes (total) :: 151 CDSs (without protein) :: 151 Pseudo Genes (ambiguous residues) :: 0 of 151 Pseudo Genes (frameshifted) :: 78 of 151 Pseudo Genes (incomplete) :: 80 of 151REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274 Genes (RNA) :: 40 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 2 Pseudo Genes (total) :: 151 CDSs (without protein) :: 151 Pseudo Genes (ambiguous residues) :: 0 of 151 Pseudo Genes (frameshifted) :: 78 of 151 Pseudo Genes (incomplete) :: 80 of 151 Pseudo Genes (internal stop) :: 65 of 151REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274 Genes (RNA) :: 40 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 2 Pseudo Genes (total) :: 151 CDSs (without protein) :: 151 Pseudo Genes (ambiguous residues) :: 0 of 151 Pseudo Genes (frameshifted) :: 78 of 151 Pseudo Genes (incomplete) :: 80 of 151 Pseudo Genes (internal stop) :: 65 of 151 Pseudo Genes (multiple problems) :: 58 of 151REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274 Genes (RNA) :: 40 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 2 Pseudo Genes (total) :: 151 CDSs (without protein) :: 151 Pseudo Genes (ambiguous residues) :: 0 of 151 Pseudo Genes (frameshifted) :: 78 of 151 Pseudo Genes (incomplete) :: 80 of 151 Pseudo Genes (internal stop) :: 65 of 151 Pseudo Genes (multiple problems) :: 58 of 151 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001102.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4024151 Source DNA and bacteria available from Matthias Horn (horn@microbial-ecology.net) Contacts: Matthias Horn (horn@microbial-ecology.net) David Bruce (microbe@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 2,679 bp tandem repeat with 24.7 copies of a 108 bp repeat unit within the exported fasta file from 1551970-1554648. There is a 14,510 bp tandemly duplicated region that is 100% identical within the exported fasta file from 213973-242992. There is also a 12,291 bp tandemly duplicated region that is 100% identical within the exported fasta file from 540862-565443. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/20/2023 03:30:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 1,465 CDSs (total) :: 1,425 Genes (coding) :: 1,274 CDSs (with protein) :: 1,274 Genes (RNA) :: 40 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 35 ncRNAs :: 2 Pseudo Genes (total) :: 151 CDSs (without protein) :: 151 Pseudo Genes (ambiguous residues) :: 0 of 151 Pseudo Genes (frameshifted) :: 78 of 151 Pseudo Genes (incomplete) :: 80 of 151 Pseudo Genes (internal stop) :: 65 of 151 Pseudo Genes (multiple problems) :: 58 of 151 ##Genome-Annotation-Data-END## COMPLETENESS: full length.