-- dump date 20140619_024539 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_265429.2 304570536 3517358 complement(516..1535) 1 NC_007205.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1535 ilvC 3517358 ilvC Candidatus Pelagibacter ubique HTCC1062 ketol-acid reductoisomerase YP_265429.2 516 R 335992 CDS YP_265430.1 71082711 3517359 complement(1556..2104) 1 NC_007205.1 acetolactate synthase small subunit 2104 ilvH 3517359 ilvH Candidatus Pelagibacter ubique HTCC1062 acetolactate synthase small subunit YP_265430.1 1556 R 335992 CDS YP_265431.1 71082712 3517360 complement(2105..3871) 1 NC_007205.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit 3871 ilvB 3517360 ilvB Candidatus Pelagibacter ubique HTCC1062 acetolactate synthase 3 catalytic subunit YP_265431.1 2105 R 335992 CDS YP_265432.1 71082713 3517361 complement(3891..4832) 1 NC_007205.1 tRNA isopentenyltransferase 4832 miaA 3517361 miaA Candidatus Pelagibacter ubique HTCC1062 tRNA isopentenyltransferase YP_265432.1 3891 R 335992 CDS YP_265433.1 71082714 3517362 complement(4835..6247) 1 NC_007205.1 periplasmic serine protease DO-like 6247 htrA 3517362 htrA Candidatus Pelagibacter ubique HTCC1062 periplasmic serine protease DO-like YP_265433.1 4835 R 335992 CDS YP_265434.1 71082715 3517363 complement(6249..6434) 1 NC_007205.1 ubiquitin binding protein 6434 3517363 SAR11_0006 Candidatus Pelagibacter ubique HTCC1062 ubiquitin binding protein YP_265434.1 6249 R 335992 CDS YP_265435.1 71082716 3516637 complement(6444..7310) 1 NC_007205.1 integral membrane proteinase 7310 hflC 3516637 hflC Candidatus Pelagibacter ubique HTCC1062 integral membrane proteinase YP_265435.1 6444 R 335992 CDS YP_265436.1 71082717 3516638 complement(7310..8410) 1 NC_007205.1 integral membrane proteinase 8410 hflK 3516638 hflK Candidatus Pelagibacter ubique HTCC1062 integral membrane proteinase YP_265436.1 7310 R 335992 CDS YP_265437.1 71082718 3516639 8411..9286 1 NC_007205.1 ATPase 9286 mrp 3516639 mrp Candidatus Pelagibacter ubique HTCC1062 ATPase YP_265437.1 8411 D 335992 CDS YP_265438.1 71082719 3516640 complement(9267..10301) 1 NC_007205.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 10301 thyX 3516640 thyX Candidatus Pelagibacter ubique HTCC1062 FAD-dependent thymidylate synthase YP_265438.1 9267 R 335992 CDS YP_265439.1 71082720 3516641 complement(10519..10890) 1 NC_007205.1 possibly viral; hypothetical protein 10890 3516641 SAR11_0011 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265439.1 10519 R 335992 CDS YP_265440.1 71082721 3516642 10957..12345 1 NC_007205.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 12345 fumC 3516642 fumC Candidatus Pelagibacter ubique HTCC1062 fumarate hydratase YP_265440.1 10957 D 335992 CDS YP_265441.1 71082722 3516643 complement(12333..13784) 1 NC_007205.1 hypothetical protein 13784 3516643 SAR11_0013 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265441.1 12333 R 335992 CDS YP_265442.1 71082723 3516644 13829..15865 1 NC_007205.1 DNA helicase II 15865 uvrD 3516644 uvrD Candidatus Pelagibacter ubique HTCC1062 DNA helicase II YP_265442.1 13829 D 335992 CDS YP_265443.1 71082724 3516645 15862..17556 1 NC_007205.1 Xaa-Pro aminopeptidase 17556 pepP 3516645 pepP Candidatus Pelagibacter ubique HTCC1062 Xaa-Pro aminopeptidase YP_265443.1 15862 D 335992 CDS YP_265444.1 71082725 3516646 complement(17539..19569) 1 NC_007205.1 DNA ligase 19569 ligA 3516646 ligA Candidatus Pelagibacter ubique HTCC1062 DNA ligase YP_265444.1 17539 R 335992 CDS YP_265445.1 71082726 3516647 complement(19571..20419) 1 NC_007205.1 competence lipoprotein ComL 20419 comL 3516647 comL Candidatus Pelagibacter ubique HTCC1062 competence lipoprotein ComL YP_265445.1 19571 R 335992 CDS YP_265446.1 71082727 3516648 complement(20458..21378) 1 NC_007205.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 21378 lpxC 3516648 lpxC Candidatus Pelagibacter ubique HTCC1062 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_265446.1 20458 R 335992 CDS YP_265447.1 71082728 3516649 complement(21444..22553) 1 NC_007205.1 cell division protein FtsA 22553 ftsA 3516649 ftsA Candidatus Pelagibacter ubique HTCC1062 cell division protein FtsA YP_265447.1 21444 R 335992 CDS YP_265448.1 71082729 3516650 complement(22553..23230) 1 NC_007205.1 FtsQ; cell division protein FtsQ 23230 ftsQ 3516650 ftsQ Candidatus Pelagibacter ubique HTCC1062 cell division protein FtsQ YP_265448.1 22553 R 335992 CDS YP_265449.1 71082730 3516651 complement(23211..24125) 1 NC_007205.1 D-alanine--D-alanine ligase 24125 ddlB 3516651 ddlB Candidatus Pelagibacter ubique HTCC1062 D-alanine--D-alanine ligase YP_265449.1 23211 R 335992 CDS YP_265450.1 71082731 3516652 complement(24127..25035) 1 NC_007205.1 UDP-N-acetylenolpyruvoylglucosamine reductase 25035 murB 3516652 murB Candidatus Pelagibacter ubique HTCC1062 UDP-N-acetylenolpyruvoylglucosamine reductase YP_265450.1 24127 R 335992 CDS YP_265451.1 71082732 3516653 complement(25035..26429) 1 NC_007205.1 UDP-N-acetylmuramate--L-alanine ligase 26429 murC 3516653 murC Candidatus Pelagibacter ubique HTCC1062 UDP-N-acetylmuramate--L-alanine ligase YP_265451.1 25035 R 335992 CDS YP_265452.1 71082733 3516654 complement(26419..27489) 1 NC_007205.1 D-inositol-3-phosphate glycosyltransferase 27489 murG 3516654 murG Candidatus Pelagibacter ubique HTCC1062 D-inositol-3-phosphate glycosyltransferase YP_265452.1 26419 R 335992 CDS YP_265453.1 71082734 3516655 complement(27490..28614) 1 NC_007205.1 cell division protein FtsW 28614 ftsW 3516655 ftsW Candidatus Pelagibacter ubique HTCC1062 cell division protein FtsW YP_265453.1 27490 R 335992 CDS YP_265454.1 71082735 3516656 complement(28611..29906) 1 NC_007205.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase 29906 murD 3516656 murD Candidatus Pelagibacter ubique HTCC1062 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_265454.1 28611 R 335992 CDS YP_265455.1 71082736 3516657 complement(29906..30991) 1 NC_007205.1 phospho-N-acetylmuramoyl-pentapeptide- transferase 30991 mraY 3516657 mraY Candidatus Pelagibacter ubique HTCC1062 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_265455.1 29906 R 335992 CDS YP_265456.1 71082737 3516658 complement(30981..33827) 1 NC_007205.1 murE and murF fusion; bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase 33827 murEF 3516658 murEF Candidatus Pelagibacter ubique HTCC1062 bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase YP_265456.1 30981 R 335992 CDS YP_265457.1 71082738 3516659 complement(33835..35511) 1 NC_007205.1 penicillin-binding protein 2; cell division protein FtsI 35511 ftsI 3516659 ftsI Candidatus Pelagibacter ubique HTCC1062 cell division protein FtsI YP_265457.1 33835 R 335992 CDS YP_265458.1 71082739 3516660 complement(35504..35812) 1 NC_007205.1 ingrowth of wall at septum; cell division protein FtsL 35812 ftsL 3516660 ftsL Candidatus Pelagibacter ubique HTCC1062 cell division protein FtsL YP_265458.1 35504 R 335992 CDS YP_265459.1 71082740 3516661 complement(35809..36819) 1 NC_007205.1 S-adenosyl-methyltransferase 36819 mraW 3516661 mraW Candidatus Pelagibacter ubique HTCC1062 S-adenosyl-methyltransferase YP_265459.1 35809 R 335992 CDS YP_265460.1 71082741 3516662 complement(36838..38325) 1 NC_007205.1 FtsZ; cell division protein FtsZ 38325 ftsZ 3516662 ftsZ Candidatus Pelagibacter ubique HTCC1062 cell division protein FtsZ YP_265460.1 36838 R 335992 CDS YP_265461.1 71082742 3516663 complement(38328..38795) 1 NC_007205.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 38795 mraZ 3516663 mraZ Candidatus Pelagibacter ubique HTCC1062 cell division protein MraZ YP_265461.1 38328 R 335992 CDS YP_265462.1 71082743 3516664 complement(39448..40191) 1 NC_007205.1 probable ybjR; N-acetylmuramoyl-L-alanine amidase 40191 ybjR 3516664 ybjR Candidatus Pelagibacter ubique HTCC1062 N-acetylmuramoyl-L-alanine amidase YP_265462.1 39448 R 335992 CDS YP_265463.1 71082744 3516665 40261..41046 1 NC_007205.1 lipoprotein precursor 41046 vacJ 3516665 vacJ Candidatus Pelagibacter ubique HTCC1062 lipoprotein precursor YP_265463.1 40261 D 335992 CDS YP_265464.1 71082745 3516666 41060..41653 1 NC_007205.1 Ttg2 Family, yrbC similar to toluene tolerance protein; hypothetical protein 41653 yrbC 3516666 yrbC Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265464.1 41060 D 335992 CDS YP_265465.1 71082746 3516669 complement(41900..43687) 1 NC_007205.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 43687 rpoD 3516669 rpoD Candidatus Pelagibacter ubique HTCC1062 RNA polymerase sigma factor RpoD YP_265465.1 41900 R 335992 CDS YP_265466.1 71082747 3516670 complement(43790..45565) 1 NC_007205.1 probable dnaG; DNA primase 45565 dnaG 3516670 dnaG Candidatus Pelagibacter ubique HTCC1062 DNA primase YP_265466.1 43790 R 335992 CDS YP_265467.1 71082748 3516671 complement(45565..46026) 1 NC_007205.1 hypothetical protein 46026 yqeY 3516671 yqeY Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265467.1 45565 R 335992 CDS YP_265468.1 71082749 3516672 46155..47351 1 NC_007205.1 carbamoylphosphate synthase small subunit 47351 carA 3516672 carA Candidatus Pelagibacter ubique HTCC1062 carbamoylphosphate synthase small subunit YP_265468.1 46155 D 335992 CDS YP_265469.1 71082750 3516673 47329..50553 1 NC_007205.1 carbamoyl-phosphate synthase large subunit 50553 carB 3516673 carB Candidatus Pelagibacter ubique HTCC1062 carbamoyl-phosphate synthase large subunit YP_265469.1 47329 D 335992 CDS YP_265470.2 304570537 3516617 complement(50650..52812) 1 NC_007205.1 secretory autotransporter 52812 3516617 SAR11_0042 Candidatus Pelagibacter ubique HTCC1062 secretory autotransporter YP_265470.2 50650 R 335992 CDS YP_265471.1 71082752 3516618 complement(52886..53026) 1 NC_007205.1 hypothetical protein 53026 3516618 SAR11_0043 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265471.1 52886 R 335992 CDS YP_265472.1 71082753 3516619 53177..55348 1 NC_007205.1 Outer membrane autotransporter 55348 3516619 SAR11_0044 Candidatus Pelagibacter ubique HTCC1062 Outer membrane autotransporter YP_265472.1 53177 D 335992 CDS YP_265473.1 71082754 3516620 55348..55692 1 NC_007205.1 hypothetical protein 55692 3516620 SAR11_0045 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265473.1 55348 D 335992 CDS YP_265474.2 304570538 3516621 complement(55701..57875) 1 NC_007205.1 Outer membrane autotransporter 57875 3516621 SAR11_0046 Candidatus Pelagibacter ubique HTCC1062 Outer membrane autotransporter YP_265474.2 55701 R 335992 CDS YP_265475.1 71082756 3516622 58036..59004 1 NC_007205.1 transcription regulatory protein 59004 3516622 SAR11_0047 Candidatus Pelagibacter ubique HTCC1062 transcription regulatory protein YP_265475.1 58036 D 335992 CDS YP_265476.1 71082757 3516623 complement(58997..59845) 1 NC_007205.1 Sodium bile symporter family protein 59845 3516623 SAR11_0048 Candidatus Pelagibacter ubique HTCC1062 Sodium bile symporter family protein YP_265476.1 58997 R 335992 CDS YP_265477.1 71082758 3516624 complement(60069..62204) 1 NC_007205.1 ammonium transporter 62204 3516624 SAR11_0049 Candidatus Pelagibacter ubique HTCC1062 ammonium transporter YP_265477.1 60069 R 335992 CDS YP_265478.1 71082759 3516625 complement(62323..64560) 1 NC_007205.1 ammonium transporter 64560 3516625 SAR11_0050 Candidatus Pelagibacter ubique HTCC1062 ammonium transporter YP_265478.1 62323 R 335992 CDS YP_265479.1 71082760 3516626 complement(64574..64903) 1 NC_007205.1 heavy metal transport/detoxification protein 64903 copZ 3516626 copZ Candidatus Pelagibacter ubique HTCC1062 heavy metal transport/detoxification protein YP_265479.1 64574 R 335992 CDS YP_265480.1 71082761 3516627 complement(65036..65326) 1 NC_007205.1 hypothetical protein 65326 3516627 SAR11_0052 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265480.1 65036 R 335992 CDS YP_265481.1 71082762 3516628 complement(65399..65836) 1 NC_007205.1 pseudo-pilin PulG 65836 pulG 3516628 pulG Candidatus Pelagibacter ubique HTCC1062 pseudo-pilin PulG YP_265481.1 65399 R 335992 CDS YP_265482.1 71082763 3516629 complement(65846..66331) 1 NC_007205.1 pilin 66331 pilA 3516629 pilA Candidatus Pelagibacter ubique HTCC1062 pilin YP_265482.1 65846 R 335992 CDS YP_265483.1 71082764 3516630 66490..66774 1 NC_007205.1 sulfate transporter/antisigma-factor antagonist STAS 66774 3516630 SAR11_0055 Candidatus Pelagibacter ubique HTCC1062 sulfate transporter/antisigma-factor antagonist STAS YP_265483.1 66490 D 335992 CDS YP_265484.1 71082765 3516631 66771..67070 1 NC_007205.1 sulfate transporter/antisigma-factor antagonist STAS 67070 spoIIA 3516631 spoIIA Candidatus Pelagibacter ubique HTCC1062 sulfate transporter/antisigma-factor antagonist STAS YP_265484.1 66771 D 335992 CDS YP_265485.1 71082766 3516632 67078..67512 1 NC_007205.1 anti-sigma regulatory factor 67512 rsbW 3516632 rsbW Candidatus Pelagibacter ubique HTCC1062 anti-sigma regulatory factor YP_265485.1 67078 D 335992 CDS YP_265486.1 71082767 3516633 complement(67509..68741) 1 NC_007205.1 Type IV fimbrial assembly protein, pilC; type II secretion system PilC 68741 pilC 3516633 pilC Candidatus Pelagibacter ubique HTCC1062 type II secretion system PilC YP_265486.1 67509 R 335992 CDS YP_265487.1 71082768 3516634 complement(68744..70495) 1 NC_007205.1 Type IV pilus assembly protein (ATPase) PilB; type II secretion system PilB 70495 pilB 3516634 pilB Candidatus Pelagibacter ubique HTCC1062 type II secretion system PilB YP_265487.1 68744 R 335992 CDS YP_265488.1 71082769 3516635 complement(70495..72051) 1 NC_007205.1 Type IV fimbrial biogenesis protein PilQ; type II secretion PilQ 72051 pilQ 3516635 pilQ Candidatus Pelagibacter ubique HTCC1062 type II secretion PilQ YP_265488.1 70495 R 335992 CDS YP_265489.1 71082770 3516636 complement(72054..72560) 1 NC_007205.1 type 4 fimbrial biogenesis protein PilP 72560 pilP 3516636 pilP Candidatus Pelagibacter ubique HTCC1062 type 4 fimbrial biogenesis protein PilP YP_265489.1 72054 R 335992 CDS YP_265490.1 71082771 3516598 complement(72547..73224) 1 NC_007205.1 type 4 fimbrial biogenesis protein PilO 73224 pilO 3516598 pilO Candidatus Pelagibacter ubique HTCC1062 type 4 fimbrial biogenesis protein PilO YP_265490.1 72547 R 335992 CDS YP_265491.1 71082772 3516599 complement(73227..75770) 1 NC_007205.1 Type IV pilus biogenesis protein, PilM/PilN fusion; type II secretion 75770 pilMN 3516599 pilMN Candidatus Pelagibacter ubique HTCC1062 type II secretion YP_265491.1 73227 R 335992 CDS YP_265492.1 71082773 3516600 complement(77115..78461) 1 NC_007205.1 GAF photoreceptor fused to PP2C; sigma factor sigB regulation protein 78461 rsbU 3516600 rsbU Candidatus Pelagibacter ubique HTCC1062 sigma factor sigB regulation protein YP_265492.1 77115 R 335992 CDS YP_265493.1 71082774 3516601 78561..79325 1 NC_007205.1 Type IV Prepilin Peptidase A24A; type II secretion PilD 79325 pild 3516601 pild Candidatus Pelagibacter ubique HTCC1062 type II secretion PilD YP_265493.1 78561 D 335992 CDS YP_265494.1 71082775 3516602 79386..80105 1 NC_007205.1 membrane-bound pili assembly protein Fimc 80105 fimc 3516602 fimc Candidatus Pelagibacter ubique HTCC1062 membrane-bound pili assembly protein Fimc YP_265494.1 79386 D 335992 CDS YP_265495.1 71082776 3516603 complement(80345..84916) 1 NC_007205.1 Type IV fimbrial biogenesis protein, PilY1; type II secretion PilY1 84916 pilY1 3516603 pilY1 Candidatus Pelagibacter ubique HTCC1062 type II secretion PilY1 YP_265495.1 80345 R 335992 CDS YP_265496.1 71082777 3516604 complement(85064..85588) 1 NC_007205.1 pilX-type protein 85588 3516604 SAR11_0069 Candidatus Pelagibacter ubique HTCC1062 pilX-type protein YP_265496.1 85064 R 335992 CDS YP_265497.1 71082778 3516605 complement(85664..86368) 1 NC_007205.1 type IV pilus assembly protein PilW 86368 3516605 SAR11_0070 Candidatus Pelagibacter ubique HTCC1062 type IV pilus assembly protein PilW YP_265497.1 85664 R 335992 CDS YP_265498.1 71082779 3516606 complement(86437..87291) 1 NC_007205.1 pilW-like; type IV pilin secretion protein 87291 3516606 SAR11_0071 Candidatus Pelagibacter ubique HTCC1062 type IV pilin secretion protein YP_265498.1 86437 R 335992 CDS YP_265499.1 71082780 3516607 complement(87366..88016) 1 NC_007205.1 similar to PilV; pilV-like pilin protein 88016 3516607 SAR11_0072 Candidatus Pelagibacter ubique HTCC1062 pilV-like pilin protein YP_265499.1 87366 R 335992 CDS YP_265500.1 71082781 3516608 complement(88021..88746) 1 NC_007205.1 pilU-like; pilin protein PilU 88746 3516608 SAR11_0073 Candidatus Pelagibacter ubique HTCC1062 pilin protein PilU YP_265500.1 88021 R 335992 CDS YP_265501.1 71082782 3516609 complement(88721..89734) 1 NC_007205.1 Type IV pilus retraction ATPase PilT; type II secretion PilT 89734 pilT 3516609 pilT Candidatus Pelagibacter ubique HTCC1062 type II secretion PilT YP_265501.1 88721 R 335992 CDS YP_265502.1 71082783 3516610 complement(89886..90548) 1 NC_007205.1 hypothetical protein 90548 3516610 SAR11_0075 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265502.1 89886 R 335992 CDS YP_265503.1 71082784 3516611 complement(90548..91492) 1 NC_007205.1 nucleoside-diphosphate-sugar epimerase 91492 3516611 SAR11_0076 Candidatus Pelagibacter ubique HTCC1062 nucleoside-diphosphate-sugar epimerase YP_265503.1 90548 R 335992 CDS YP_265504.1 71082785 3516612 91514..92458 1 NC_007205.1 thioredoxin reductase 92458 trxB 3516612 trxB Candidatus Pelagibacter ubique HTCC1062 thioredoxin reductase YP_265504.1 91514 D 335992 CDS YP_265505.1 71082786 3516613 92500..93519 1 NC_007205.1 NAD dependent epimerase/dehydratase protein 93519 3516613 SAR11_0078 Candidatus Pelagibacter ubique HTCC1062 NAD dependent epimerase/dehydratase protein YP_265505.1 92500 D 335992 CDS YP_265506.1 71082787 3516614 complement(93511..93960) 1 NC_007205.1 hypothetical protein 93960 ytoQ 3516614 ytoQ Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265506.1 93511 R 335992 CDS YP_265507.1 71082788 3516615 complement(93960..95159) 1 NC_007205.1 aspartate transaminase 95159 aatA 3516615 aatA Candidatus Pelagibacter ubique HTCC1062 aspartate transaminase YP_265507.1 93960 R 335992 CDS YP_265508.1 71082789 3516616 95195..97366 1 NC_007205.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 97366 uvrB 3516616 uvrB Candidatus Pelagibacter ubique HTCC1062 excinuclease ABC subunit B YP_265508.1 95195 D 335992 CDS YP_265509.1 71082790 3516578 97348..98100 1 NC_007205.1 short-chain dehydrogenase 98100 3516578 SAR11_0082 Candidatus Pelagibacter ubique HTCC1062 short-chain dehydrogenase YP_265509.1 97348 D 335992 CDS YP_265510.1 71082791 3516579 98097..98522 1 NC_007205.1 dihydroneopterin aldolase 98522 folB 3516579 folB Candidatus Pelagibacter ubique HTCC1062 dihydroneopterin aldolase YP_265510.1 98097 D 335992 CDS YP_265511.1 71082792 3516580 98509..100344 1 NC_007205.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 100344 uvrC 3516580 uvrC Candidatus Pelagibacter ubique HTCC1062 excinuclease ABC subunit C YP_265511.1 98509 D 335992 CDS YP_265512.1 71082793 3516581 100347..100931 1 NC_007205.1 CDP-diacylglycerol 100931 pgsA 3516581 pgsA Candidatus Pelagibacter ubique HTCC1062 CDP-diacylglycerol YP_265512.1 100347 D 335992 CDS YP_265513.1 71082794 3516582 complement(100928..101809) 1 NC_007205.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 101809 ilvE 3516582 ilvE Candidatus Pelagibacter ubique HTCC1062 branched-chain amino acid aminotransferase YP_265513.1 100928 R 335992 CDS YP_265514.1 71082795 3516583 101880..102317 1 NC_007205.1 MarR family (Pfam); transcriptional regulator 102317 petP 3516583 petP Candidatus Pelagibacter ubique HTCC1062 transcriptional regulator YP_265514.1 101880 D 335992 CDS YP_265515.1 71082796 3516584 102310..102987 1 NC_007205.1 OmpR family, response regulator, ompR; two-component system 102987 petR 3516584 petR Candidatus Pelagibacter ubique HTCC1062 two-component system YP_265515.1 102310 D 335992 CDS YP_265516.1 71082797 3516585 102968..104287 1 NC_007205.1 osmolarity sensor protein envZ 104287 envZ 3516585 envZ Candidatus Pelagibacter ubique HTCC1062 osmolarity sensor protein envZ YP_265516.1 102968 D 335992 CDS YP_265517.1 71082798 3516586 complement(104265..104519) 1 NC_007205.1 hypothetical protein 104519 3516586 SAR11_0090 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265517.1 104265 R 335992 CDS YP_265518.1 71082799 3516587 104566..105336 1 NC_007205.1 lgt (umpA); prolipoprotein diacylglyceryl transferase 105336 lgt 3516587 lgt Candidatus Pelagibacter ubique HTCC1062 prolipoprotein diacylglyceryl transferase YP_265518.1 104566 D 335992 CDS YP_265519.1 71082800 3516588 105326..106369 1 NC_007205.1 cyclopropane-fatty-acyl-phospholipid synthase 106369 cdfA 3516588 cdfA Candidatus Pelagibacter ubique HTCC1062 cyclopropane-fatty-acyl-phospholipid synthase YP_265519.1 105326 D 335992 CDS YP_265520.1 71082801 3516589 106800..107135 1 NC_007205.1 YfiH family COG1496; hypothetical protein 107135 3516589 SAR11_0093 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265520.1 106800 D 335992 CDS YP_265521.1 71082802 3516590 107142..108074 1 NC_007205.1 ribose-phosphate pyrophosphokinase 108074 prsA 3516590 prsA Candidatus Pelagibacter ubique HTCC1062 ribose-phosphate pyrophosphokinase YP_265521.1 107142 D 335992 CDS YP_265522.1 71082803 3516591 108119..108805 1 NC_007205.1 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 108805 rplY 3516591 rplY Candidatus Pelagibacter ubique HTCC1062 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_265522.1 108119 D 335992 CDS YP_265523.1 71082804 3516592 108851..109411 1 NC_007205.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 109411 pth 3516592 pth Candidatus Pelagibacter ubique HTCC1062 peptidyl-tRNA hydrolase YP_265523.1 108851 D 335992 CDS YP_265524.1 71082805 3516593 109411..110484 1 NC_007205.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 110484 3516593 SAR11_0097 Candidatus Pelagibacter ubique HTCC1062 GTP-dependent nucleic acid-binding protein EngD YP_265524.1 109411 D 335992 CDS YP_265525.1 71082806 3516594 complement(110461..111240) 1 NC_007205.1 ubiquinol-cytochrome-c reductase 111240 fbcH 3516594 fbcH Candidatus Pelagibacter ubique HTCC1062 ubiquinol-cytochrome-c reductase YP_265525.1 110461 R 335992 CDS YP_265526.1 71082807 3516595 complement(111245..112504) 1 NC_007205.1 ubiquinol-cytochrome-c reductase 112504 petB 3516595 petB Candidatus Pelagibacter ubique HTCC1062 ubiquinol-cytochrome-c reductase YP_265526.1 111245 R 335992 CDS YP_265527.1 71082808 3516596 complement(112514..113023) 1 NC_007205.1 cytochrome b6-f complex iron-sulfur subunit 113023 petA 3516596 petA Candidatus Pelagibacter ubique HTCC1062 cytochrome b6-f complex iron-sulfur subunit YP_265527.1 112514 R 335992 CDS YP_265528.1 71082809 3516597 113110..113571 1 NC_007205.1 rRNA methylase 113571 spoU 3516597 spoU Candidatus Pelagibacter ubique HTCC1062 rRNA methylase YP_265528.1 113110 D 335992 CDS YP_265529.1 71082810 3516753 113571..114398 1 NC_007205.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 114398 hemF 3516753 hemF Candidatus Pelagibacter ubique HTCC1062 coproporphyrinogen III oxidase YP_265529.1 113571 D 335992 CDS YP_265530.1 71082811 3516754 114400..114876 1 NC_007205.1 transcription elongation factor 114876 greA 3516754 greA Candidatus Pelagibacter ubique HTCC1062 transcription elongation factor YP_265530.1 114400 D 335992 CDS YP_265531.1 71082812 3516755 complement(114873..116147) 1 NC_007205.1 poly(A) polymerase 116147 pcnB 3516755 pcnB Candidatus Pelagibacter ubique HTCC1062 poly(A) polymerase YP_265531.1 114873 R 335992 CDS YP_265532.1 71082813 3516757 complement(116257..117102) 1 NC_007205.1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 117102 ispE 3516757 ispE Candidatus Pelagibacter ubique HTCC1062 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_265532.1 116257 R 335992 CDS YP_265533.1 71082814 3516758 complement(117106..118791) 1 NC_007205.1 hypothetical protein 118791 3516758 SAR11_0106 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265533.1 117106 R 335992 CDS YP_265534.1 71082815 3516759 118803..119534 1 NC_007205.1 bacteriophage-type; DNA-directed DNA polymerase 119534 3516759 SAR11_0107 Candidatus Pelagibacter ubique HTCC1062 DNA-directed DNA polymerase YP_265534.1 118803 D 335992 CDS YP_265535.1 71082816 3516760 119534..120094 1 NC_007205.1 ribonuclease HII (RNase HII) 120094 rnhB 3516760 rnhB Candidatus Pelagibacter ubique HTCC1062 ribonuclease HII (RNase HII) YP_265535.1 119534 D 335992 CDS YP_265536.1 71082817 3516761 120216..121286 1 NC_007205.1 site-specific DNA methyltransferase 121286 babIM 3516761 babIM Candidatus Pelagibacter ubique HTCC1062 site-specific DNA methyltransferase YP_265536.1 120216 D 335992 CDS YP_265537.1 71082818 3516762 complement(121283..122434) 1 NC_007205.1 salicylate 1-monooxygenase 122434 nah 3516762 nah Candidatus Pelagibacter ubique HTCC1062 salicylate 1-monooxygenase YP_265537.1 121283 R 335992 CDS YP_265538.1 71082819 3516763 complement(122434..123414) 1 NC_007205.1 A/G-specific adenine glycosylase 123414 mutY 3516763 mutY Candidatus Pelagibacter ubique HTCC1062 A/G-specific adenine glycosylase YP_265538.1 122434 R 335992 CDS YP_265539.1 71082820 3516764 123415..123903 1 NC_007205.1 hypothetical protein 123903 3516764 SAR11_0112 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265539.1 123415 D 335992 CDS YP_265540.1 71082821 3516765 123975..124490 1 NC_007205.1 thiol-disulfide interchange protein; DsbA-like protein 124490 3516765 SAR11_0113 Candidatus Pelagibacter ubique HTCC1062 DsbA-like protein YP_265540.1 123975 D 335992 CDS YP_265541.1 71082822 3516766 124499..127072 1 NC_007205.1 SMC family chromosome segregation protein 127072 smc 3516766 smc Candidatus Pelagibacter ubique HTCC1062 SMC family chromosome segregation protein YP_265541.1 124499 D 335992 CDS YP_265542.1 71082823 3516767 127081..127356 1 NC_007205.1 transmembrane protein 127356 3516767 SAR11_0115 Candidatus Pelagibacter ubique HTCC1062 transmembrane protein YP_265542.1 127081 D 335992 CDS YP_265543.1 71082824 3516768 127369..128103 1 NC_007205.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 128103 atpB 3516768 atpB Candidatus Pelagibacter ubique HTCC1062 ATP synthase F0F1 subunit A YP_265543.1 127369 D 335992 CDS YP_265544.1 71082825 3516769 128123..128350 1 NC_007205.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 128350 atpE 3516769 atpE Candidatus Pelagibacter ubique HTCC1062 ATP synthase F0F1 subunit C YP_265544.1 128123 D 335992 CDS YP_265545.1 71082826 3516770 128407..128946 1 NC_007205.1 H+-transporting two-sector ATPase (subunit b') 128946 3516770 SAR11_0118 Candidatus Pelagibacter ubique HTCC1062 H+-transporting two-sector ATPase (subunit b') YP_265545.1 128407 D 335992 CDS YP_265546.1 71082827 3516733 128936..129433 1 NC_007205.1 H+-transporting two-sector ATPase (subunit b) 129433 atpF 3516733 atpF Candidatus Pelagibacter ubique HTCC1062 H+-transporting two-sector ATPase (subunit b) YP_265546.1 128936 D 335992 CDS YP_265547.1 71082828 3516734 129473..130930 1 NC_007205.1 phytoene dehydrogenase 130930 crtI 3516734 crtI Candidatus Pelagibacter ubique HTCC1062 phytoene dehydrogenase YP_265547.1 129473 D 335992 CDS YP_265548.1 71082829 3516735 130930..131781 1 NC_007205.1 phytoene synthase 131781 crtB 3516735 crtB Candidatus Pelagibacter ubique HTCC1062 phytoene synthase YP_265548.1 130930 D 335992 CDS YP_265549.1 71082830 3516736 131813..132844 1 NC_007205.1 lycopene cyclase 132844 crtY 3516736 crtY Candidatus Pelagibacter ubique HTCC1062 lycopene cyclase YP_265549.1 131813 D 335992 CDS YP_265550.1 71082831 3516737 132834..133772 1 NC_007205.1 transmembrane protein 133772 3516737 SAR11_0123 Candidatus Pelagibacter ubique HTCC1062 transmembrane protein YP_265550.1 132834 D 335992 CDS YP_265551.1 71082832 3516738 133762..134706 1 NC_007205.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 134706 lytB 3516738 lytB Candidatus Pelagibacter ubique HTCC1062 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_265551.1 133762 D 335992 CDS YP_265552.1 71082833 3516739 134707..135675 1 NC_007205.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 135675 thrB 3516739 thrB Candidatus Pelagibacter ubique HTCC1062 homoserine kinase YP_265552.1 134707 D 335992 CDS YP_265553.1 71082834 3516740 135675..136100 1 NC_007205.1 ribonuclease H (RNase H) 136100 rnhA 3516740 rnhA Candidatus Pelagibacter ubique HTCC1062 ribonuclease H (RNase H) YP_265553.1 135675 D 335992 CDS YP_265554.1 71082835 3516741 complement(136092..136577) 1 NC_007205.1 peroxisomal membrane protein a (pmp20) 136577 pmpA 3516741 pmpA Candidatus Pelagibacter ubique HTCC1062 peroxisomal membrane protein a (pmp20) YP_265554.1 136092 R 335992 CDS YP_265555.1 71082836 3516742 complement(136574..137953) 1 NC_007205.1 threonine synthase 137953 thrC 3516742 thrC Candidatus Pelagibacter ubique HTCC1062 threonine synthase YP_265555.1 136574 R 335992 CDS YP_265556.1 71082837 3516743 complement(137954..138607) 1 NC_007205.1 biogenesis of cytochrome oxidase c; surfeit locus protein 1 138607 surf1 3516743 surf1 Candidatus Pelagibacter ubique HTCC1062 surfeit locus protein 1 YP_265556.1 137954 R 335992 CDS YP_265557.1 71082838 3516744 complement(138618..139406) 1 NC_007205.1 similar to subunit III, coxC Rickettsia; cytochrome-c oxidase 139406 coxC 3516744 coxC Candidatus Pelagibacter ubique HTCC1062 cytochrome-c oxidase YP_265557.1 138618 R 335992 CDS YP_265558.1 71082839 3516745 complement(139409..139945) 1 NC_007205.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 139945 ctaG 3516745 ctaG Candidatus Pelagibacter ubique HTCC1062 cytochrome C oxidase assembly protein YP_265558.1 139409 R 335992 CDS YP_265559.1 71082840 3516746 complement(139945..140070) 1 NC_007205.1 serine protease inhibitor sgti 140070 3516746 SAR11_0132 Candidatus Pelagibacter ubique HTCC1062 serine protease inhibitor sgti YP_265559.1 139945 R 335992 CDS YP_265560.2 304570539 3516747 complement(140067..140978) 1 NC_007205.1 cytochrome c oxidase assembly factor 140978 ctaB 3516747 ctaB Candidatus Pelagibacter ubique HTCC1062 cytochrome c oxidase assembly factor YP_265560.2 140067 R 335992 CDS YP_265561.1 71082842 3516748 complement(141011..142645) 1 NC_007205.1 chain I; cytochrome-c oxidase 142645 cox1 3516748 cox1 Candidatus Pelagibacter ubique HTCC1062 cytochrome-c oxidase YP_265561.1 141011 R 335992 CDS YP_265562.1 71082843 3516749 complement(142648..143463) 1 NC_007205.1 cytochrome c oxidase polypeptide II (cytochrome aa3 subunit 2) 143463 coxB 3516749 coxB Candidatus Pelagibacter ubique HTCC1062 cytochrome c oxidase polypeptide II (cytochrome aa3 subunit 2) YP_265562.1 142648 R 335992 CDS YP_265563.1 71082844 3516750 complement(143525..144226) 1 NC_007205.1 hypothetical protein 144226 3516750 SAR11_0136 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265563.1 143525 R 335992 CDS YP_265564.1 71082845 3516751 144244..144906 1 NC_007205.1 (S)-2-haloacid dehalogenase 144906 dhlB 3516751 dhlB Candidatus Pelagibacter ubique HTCC1062 (S)-2-haloacid dehalogenase YP_265564.1 144244 D 335992 CDS YP_265565.1 71082846 3516752 complement(144899..145258) 1 NC_007205.1 MarR family (Interpro); transcriptional regulator 145258 3516752 SAR11_0138 Candidatus Pelagibacter ubique HTCC1062 transcriptional regulator YP_265565.1 144899 R 335992 CDS YP_265566.1 71082847 3516848 145353..145589 1 NC_007205.1 glutamate synthetase 145589 3516848 SAR11_0139 Candidatus Pelagibacter ubique HTCC1062 glutamate synthetase YP_265566.1 145353 D 335992 CDS YP_265567.1 71082848 3516849 145619..145999 1 NC_007205.1 DoxD-like family protein 145999 3516849 SAR11_0140 Candidatus Pelagibacter ubique HTCC1062 DoxD-like family protein YP_265567.1 145619 D 335992 CDS YP_265568.1 71082849 3516850 146096..147634 1 NC_007205.1 GltB-like protein; ferredoxin-dependent glutamate synthase peptide 147634 3516850 SAR11_0141 Candidatus Pelagibacter ubique HTCC1062 ferredoxin-dependent glutamate synthase peptide YP_265568.1 146096 D 335992 CDS YP_265569.1 71082850 3516851 147644..148483 1 NC_007205.1 pirin 148483 3516851 SAR11_0142 Candidatus Pelagibacter ubique HTCC1062 pirin YP_265569.1 147644 D 335992 CDS YP_265570.1 71082851 3516852 148483..149457 1 NC_007205.1 quinone oxidoreductase 149457 qor 3516852 qor Candidatus Pelagibacter ubique HTCC1062 quinone oxidoreductase YP_265570.1 148483 D 335992 CDS YP_265571.1 71082852 3516853 complement(149454..149858) 1 NC_007205.1 hypothetical protein 149858 3516853 SAR11_0144 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265571.1 149454 R 335992 CDS YP_265572.1 71082853 3516854 149911..150774 1 NC_007205.1 4-hydroxybenzoate octaprenyltransferase 150774 ubiA 3516854 ubiA Candidatus Pelagibacter ubique HTCC1062 4-hydroxybenzoate octaprenyltransferase YP_265572.1 149911 D 335992 CDS YP_265573.1 71082854 3516855 150774..152513 1 NC_007205.1 ABC transporter ATP-binding protein 152513 3516855 SAR11_0147 Candidatus Pelagibacter ubique HTCC1062 ABC transporter ATP-binding protein YP_265573.1 150774 D 335992 CDS YP_265574.1 71082855 3516856 152513..153775 1 NC_007205.1 3-deoxy-D-manno-octulosonic-acid transferase 153775 kdtA 3516856 kdtA Candidatus Pelagibacter ubique HTCC1062 3-deoxy-D-manno-octulosonic-acid transferase YP_265574.1 152513 D 335992 CDS YP_265575.1 71082856 3516857 153756..154700 1 NC_007205.1 tetraacyldisaccharide 4'-kinase 154700 lpxK 3516857 lpxK Candidatus Pelagibacter ubique HTCC1062 tetraacyldisaccharide 4'-kinase YP_265575.1 153756 D 335992 CDS YP_265576.1 71082857 3516858 154687..155547 1 NC_007205.1 lipid A biosynthesis lauroyl acyltransferase 155547 htrB 3516858 htrB Candidatus Pelagibacter ubique HTCC1062 lipid A biosynthesis lauroyl acyltransferase YP_265576.1 154687 D 335992 CDS YP_265577.1 71082858 3516859 complement(155552..155740) 1 NC_007205.1 hypothetical protein 155740 3516859 SAR11_0152 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265577.1 155552 R 335992 CDS YP_265578.1 71082859 3516860 155762..157027 1 NC_007205.1 phosphoribosylamine--glycine ligase 157027 purD 3516860 purD Candidatus Pelagibacter ubique HTCC1062 phosphoribosylamine--glycine ligase YP_265578.1 155762 D 335992 CDS YP_265579.1 71082860 3516861 157024..157590 1 NC_007205.1 N-6 adenine-specific DNA methylase 157590 3516861 SAR11_0154 Candidatus Pelagibacter ubique HTCC1062 N-6 adenine-specific DNA methylase YP_265579.1 157024 D 335992 CDS YP_265580.1 71082861 3516862 complement(157582..158724) 1 NC_007205.1 glucose-6-phosphate isomerase 158724 pgi 3516862 pgi Candidatus Pelagibacter ubique HTCC1062 glucose-6-phosphate isomerase YP_265580.1 157582 R 335992 CDS YP_265581.2 304570540 3516863 complement(158728..159102) 1 NC_007205.1 hypothetical protein 159102 3516863 SAR11_0156 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265581.2 158728 R 335992 CDS YP_265582.1 71082863 3516864 complement(159167..159667) 1 NC_007205.1 lipoprotein signal peptidase 159667 lspA 3516864 lspA Candidatus Pelagibacter ubique HTCC1062 lipoprotein signal peptidase YP_265582.1 159167 R 335992 CDS YP_265583.1 71082864 3516865 complement(159680..162397) 1 NC_007205.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 162397 ileS 3516865 ileS Candidatus Pelagibacter ubique HTCC1062 isoleucyl-tRNA synthetase YP_265583.1 159680 R 335992 CDS YP_265584.1 71082865 3516866 complement(162399..163316) 1 NC_007205.1 riboflavin biosynthesis protein 163316 ribF 3516866 ribF Candidatus Pelagibacter ubique HTCC1062 riboflavin biosynthesis protein YP_265584.1 162399 R 335992 CDS YP_265585.1 71082866 3516887 complement(163320..164138) 1 NC_007205.1 haloacid dehalogenase 164138 3516887 SAR11_0160 Candidatus Pelagibacter ubique HTCC1062 haloacid dehalogenase YP_265585.1 163320 R 335992 CDS YP_265586.1 71082867 3516888 164262..164552 1 NC_007205.1 molecular chaperone GroES 164552 groES 3516888 groES Candidatus Pelagibacter ubique HTCC1062 molecular chaperone GroES YP_265586.1 164262 D 335992 CDS YP_265587.1 71082868 3516889 164576..166240 1 NC_007205.1 molecular chaperone GroEL 166240 groEL 3516889 groEL Candidatus Pelagibacter ubique HTCC1062 molecular chaperone GroEL YP_265587.1 164576 D 335992 CDS YP_265588.1 71082869 3516890 166322..166435 1 NC_007205.1 hypothetical protein 166435 3516890 SAR11_0163 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265588.1 166322 D 335992 CDS YP_265589.1 71082870 3516891 complement(166432..168180) 1 NC_007205.1 rhlE; ATP-dependent RNA helicase 168180 rlhE 3516891 rlhE Candidatus Pelagibacter ubique HTCC1062 ATP-dependent RNA helicase YP_265589.1 166432 R 335992 CDS YP_265590.1 71082871 3516892 168376..170202 1 NC_007205.1 TypA; GTP-binding protein 170202 typA 3516892 typA Candidatus Pelagibacter ubique HTCC1062 GTP-binding protein YP_265590.1 168376 D 335992 CDS YP_265591.1 71082872 3516893 complement(170199..170846) 1 NC_007205.1 hypothetical protein 170846 3516893 SAR11_0166 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265591.1 170199 R 335992 CDS YP_265592.1 71082873 3516894 170900..171580 1 NC_007205.1 hypothetical protein 171580 3516894 SAR11_0167 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265592.1 170900 D 335992 CDS YP_265593.1 71082874 3516895 complement(171583..172554) 1 NC_007205.1 flavin-containing (Fugue); amine oxidase 172554 3516895 SAR11_0168 Candidatus Pelagibacter ubique HTCC1062 amine oxidase YP_265593.1 171583 R 335992 CDS YP_265594.1 71082875 3516896 complement(172551..173870) 1 NC_007205.1 protein for maturation of antibiotic MccB17 173870 pmbA 3516896 pmbA Candidatus Pelagibacter ubique HTCC1062 protein for maturation of antibiotic MccB17 YP_265594.1 172551 R 335992 CDS YP_265595.1 71082876 3516897 complement(173876..175288) 1 NC_007205.1 TldD; protein that suppresses inhibitory activity of CsrA 175288 tldD 3516897 tldD Candidatus Pelagibacter ubique HTCC1062 protein that suppresses inhibitory activity of CsrA YP_265595.1 173876 R 335992 CDS YP_265596.1 71082877 3516898 175399..175761 1 NC_007205.1 rhodanese-related sulfurtransferase 175761 3516898 SAR11_0171 Candidatus Pelagibacter ubique HTCC1062 rhodanese-related sulfurtransferase YP_265596.1 175399 D 335992 CDS YP_265597.1 71082878 3516899 175765..176112 1 NC_007205.1 hypothetical protein 176112 3516899 SAR11_0172 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265597.1 175765 D 335992 CDS YP_265598.1 71082879 3516900 176158..176700 1 NC_007205.1 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase 176700 3516900 SAR11_0173 Candidatus Pelagibacter ubique HTCC1062 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase YP_265598.1 176158 D 335992 CDS YP_265599.1 71082880 3516901 complement(176702..177877) 1 NC_007205.1 hypothetical protein 177877 3516901 SAR11_0174 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265599.1 176702 R 335992 CDS YP_265600.1 71082881 3516902 complement(177954..178838) 1 NC_007205.1 dapA-like protein 178838 3516902 SAR11_0175 Candidatus Pelagibacter ubique HTCC1062 dapA-like protein YP_265600.1 177954 R 335992 CDS YP_265601.1 71082882 3516903 178883..179818 1 NC_007205.1 GmdA; GDP-mannose 4,6-dehydratase 179818 gmdA 3516903 gmdA Candidatus Pelagibacter ubique HTCC1062 GDP-mannose 4,6-dehydratase YP_265601.1 178883 D 335992 CDS YP_265602.1 71082883 3516904 179815..180753 1 NC_007205.1 heptosyltransferase 180753 3516904 SAR11_0177 Candidatus Pelagibacter ubique HTCC1062 heptosyltransferase YP_265602.1 179815 D 335992 CDS YP_265603.1 71082884 3516905 complement(180750..181256) 1 NC_007205.1 DnaJ N Terminal End Only; heat shock protein 181256 3516905 SAR11_0178 Candidatus Pelagibacter ubique HTCC1062 heat shock protein YP_265603.1 180750 R 335992 CDS YP_265604.1 71082885 3516906 181274..183349 1 NC_007205.1 oligopeptidase B 183349 ptrB 3516906 ptrB Candidatus Pelagibacter ubique HTCC1062 oligopeptidase B YP_265604.1 181274 D 335992 CDS YP_265605.1 71082886 3516926 183448..183894 1 NC_007205.1 heat shock protein a 183894 ibpA 3516926 ibpA Candidatus Pelagibacter ubique HTCC1062 heat shock protein a YP_265605.1 183448 D 335992 CDS YP_265606.1 71082887 3516927 complement(183941..184246) 1 NC_007205.1 hypothetical protein 184246 3516927 SAR11_0182 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265606.1 183941 R 335992 CDS YP_265607.1 71082888 3516928 184378..185688 1 NC_007205.1 xanthine/uracil/vitamin C permease family protein 185688 3516928 SAR11_0183 Candidatus Pelagibacter ubique HTCC1062 xanthine/uracil/vitamin C permease family protein YP_265607.1 184378 D 335992 CDS YP_265608.1 71082889 3516929 complement(185722..186258) 1 NC_007205.1 phosphoribosyltransferase 186258 3516929 SAR11_0184 Candidatus Pelagibacter ubique HTCC1062 phosphoribosyltransferase YP_265608.1 185722 R 335992 CDS YP_265609.1 71082890 3516930 186287..186583 1 NC_007205.1 hypothetical protein 186583 3516930 SAR11_0185 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265609.1 186287 D 335992 CDS YP_265610.1 71082891 3516931 complement(186570..187142) 1 NC_007205.1 DNA-3-methyladenine glycosylase I 187142 tag 3516931 tag Candidatus Pelagibacter ubique HTCC1062 DNA-3-methyladenine glycosylase I YP_265610.1 186570 R 335992 CDS YP_265611.1 71082892 3516932 complement(187198..188082) 1 NC_007205.1 DMT family permease 188082 3516932 SAR11_0187 Candidatus Pelagibacter ubique HTCC1062 DMT family permease YP_265611.1 187198 R 335992 CDS YP_265612.1 71082893 3516933 188118..188561 1 NC_007205.1 peptide methionine sulfoxide reductase 188561 msrB 3516933 msrB Candidatus Pelagibacter ubique HTCC1062 peptide methionine sulfoxide reductase YP_265612.1 188118 D 335992 CDS YP_265613.1 71082894 3516934 188563..189375 1 NC_007205.1 rhodanese-like, sseA (KEGG b2521); thiosulfate sulfurtransferase 189375 sseA 3516934 sseA Candidatus Pelagibacter ubique HTCC1062 thiosulfate sulfurtransferase YP_265613.1 188563 D 335992 CDS YP_265614.1 71082895 3516935 189379..190248 1 NC_007205.1 YhiI; HlyD family-like protein 190248 yhil 3516935 yhil Candidatus Pelagibacter ubique HTCC1062 HlyD family-like protein YP_265614.1 189379 D 335992 CDS YP_265615.1 71082896 3516936 190248..193370 1 NC_007205.1 AcrB/AcrD/AcrF family protein 193370 3516936 SAR11_0191 Candidatus Pelagibacter ubique HTCC1062 AcrB/AcrD/AcrF family protein YP_265615.1 190248 D 335992 CDS YP_265616.1 71082897 3516937 complement(193367..193966) 1 NC_007205.1 similar to slt domain (Fugue); soluble lytic murein transglycosylase 193966 3516937 SAR11_0192 Candidatus Pelagibacter ubique HTCC1062 soluble lytic murein transglycosylase YP_265616.1 193367 R 335992 CDS YP_265617.1 71082898 3516938 complement(193953..194342) 1 NC_007205.1 hypothetical protein 194342 3516938 SAR11_1720 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265617.1 193953 R 335992 CDS YP_265618.1 71082899 3516939 194401..195117 1 NC_007205.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 195117 gpmA 3516939 gpmA Candidatus Pelagibacter ubique HTCC1062 2,3-bisphosphoglycerate-independent phosphoglycerate mutase YP_265618.1 194401 D 335992 CDS YP_265619.1 71082900 3516940 complement(195106..195795) 1 NC_007205.1 nucleotidyltransferase family protein 195795 3516940 SAR11_0194 Candidatus Pelagibacter ubique HTCC1062 nucleotidyltransferase family protein YP_265619.1 195106 R 335992 CDS YP_265620.1 71082901 3516941 complement(195792..196757) 1 NC_007205.1 phosphotransferase enzyme family protein 196757 3516941 SAR11_0195 Candidatus Pelagibacter ubique HTCC1062 phosphotransferase enzyme family protein YP_265620.1 195792 R 335992 CDS YP_265621.1 71082902 3516942 complement(196761..197219) 1 NC_007205.1 cell division control protein 6 197219 3516942 SAR11_0196 Candidatus Pelagibacter ubique HTCC1062 cell division control protein 6 YP_265621.1 196761 R 335992 CDS YP_265622.1 71082903 3516943 complement(197203..198489) 1 NC_007205.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 198489 ahcY 3516943 ahcY Candidatus Pelagibacter ubique HTCC1062 S-adenosyl-L-homocysteine hydrolase YP_265622.1 197203 R 335992 CDS YP_265623.1 71082904 3516944 complement(198533..200071) 1 NC_007205.1 two-component sensor histidine kinase 200071 chvG 3516944 chvG Candidatus Pelagibacter ubique HTCC1062 two-component sensor histidine kinase YP_265623.1 198533 R 335992 CDS YP_265624.1 71082905 3517528 complement(200071..200778) 1 NC_007205.1 two-component system response regulator 200778 chvI 3517528 chvI Candidatus Pelagibacter ubique HTCC1062 two-component system response regulator YP_265624.1 200071 R 335992 CDS YP_265625.1 71082906 3517529 complement(200829..203603) 1 NC_007205.1 DNA polymerase I 203603 polA 3517529 polA Candidatus Pelagibacter ubique HTCC1062 DNA polymerase I YP_265625.1 200829 R 335992 CDS YP_265626.1 71082907 3517530 203654..204583 1 NC_007205.1 YadG-like ABC transporter protein 204583 3517530 SAR11_0201 Candidatus Pelagibacter ubique HTCC1062 YadG-like ABC transporter protein YP_265626.1 203654 D 335992 CDS YP_265627.1 71082908 3517531 204616..205167 1 NC_007205.1 BioY family (Pfam); biotin synthase 205167 3517531 SAR11_0202 Candidatus Pelagibacter ubique HTCC1062 biotin synthase YP_265627.1 204616 D 335992 CDS YP_265628.1 71082909 3517532 complement(205160..205723) 1 NC_007205.1 response regulator 205723 3517532 SAR11_0203 Candidatus Pelagibacter ubique HTCC1062 response regulator YP_265628.1 205160 R 335992 CDS YP_265629.1 71082910 3517533 205872..207050 1 NC_007205.1 lysine/ornithine decarboxylase 207050 speC 3517533 speC Candidatus Pelagibacter ubique HTCC1062 lysine/ornithine decarboxylase YP_265629.1 205872 D 335992 CDS YP_265630.1 71082911 3517534 207050..208093 1 NC_007205.1 transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine; deoxyhypusine synthase-like protein 208093 dys2 3517534 dys2 Candidatus Pelagibacter ubique HTCC1062 deoxyhypusine synthase-like protein YP_265630.1 207050 D 335992 CDS YP_265631.1 71082912 3517535 208096..208971 1 NC_007205.1 arginase 208971 speB1 3517535 speB1 Candidatus Pelagibacter ubique HTCC1062 arginase YP_265631.1 208096 D 335992 CDS YP_265632.1 71082913 3517536 complement(208968..209522) 1 NC_007205.1 YhhQ; hypothetical protein 209522 yhhQ 3517536 yhhQ Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265632.1 208968 R 335992 CDS YP_265633.1 71082914 3517537 complement(209522..209845) 1 NC_007205.1 50S ribosomal protein L28 209845 rpmB 3517537 rpmB Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L28 YP_265633.1 209522 R 335992 CDS YP_265634.1 71082915 3517538 complement(209899..210951) 1 NC_007205.1 dihydroorotate dehydrogenase 210951 pyrD 3517538 pyrD Candidatus Pelagibacter ubique HTCC1062 dihydroorotate dehydrogenase YP_265634.1 209899 R 335992 CDS YP_265635.1 71082916 3517539 complement(210951..212528) 1 NC_007205.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 212528 lysK 3517539 lysK Candidatus Pelagibacter ubique HTCC1062 lysyl-tRNA synthetase YP_265635.1 210951 R 335992 CDS YP_265636.1 71082917 3517540 212604..214049 1 NC_007205.1 TrkH; potassium uptake protein 214049 trkH 3517540 trkH Candidatus Pelagibacter ubique HTCC1062 potassium uptake protein YP_265636.1 212604 D 335992 CDS YP_265637.1 71082918 3517541 214052..215428 1 NC_007205.1 AmpG; muropeptide permease 215428 ampG 3517541 ampG Candidatus Pelagibacter ubique HTCC1062 muropeptide permease YP_265637.1 214052 D 335992 CDS YP_265638.1 71082919 3517542 215418..216164 1 NC_007205.1 SH3 and NLP/P60 domains (Pfam); hypothetical protein 216164 3517542 SAR11_0214 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265638.1 215418 D 335992 CDS YP_265639.1 71082920 3517543 complement(216161..217057) 1 NC_007205.1 prephenate dehydrogenase 217057 tyrA 3517543 tyrA Candidatus Pelagibacter ubique HTCC1062 prephenate dehydrogenase YP_265639.1 216161 R 335992 CDS YP_265640.1 71082921 3517544 complement(217060..218142) 1 NC_007205.1 histidinol-phosphate aminotransferase 218142 hisC 3517544 hisC Candidatus Pelagibacter ubique HTCC1062 histidinol-phosphate aminotransferase YP_265640.1 217060 R 335992 CDS YP_265641.1 71082922 3517545 218334..219452 1 NC_007205.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 219452 metX 3517545 metX Candidatus Pelagibacter ubique HTCC1062 homoserine O-acetyltransferase YP_265641.1 218334 D 335992 CDS YP_265642.1 71082923 3517546 219455..220051 1 NC_007205.1 MetW; methionine biosynthesis protein 220051 metW 3517546 metW Candidatus Pelagibacter ubique HTCC1062 methionine biosynthesis protein YP_265642.1 219455 D 335992 CDS YP_265643.1 71082924 3517547 220052..220771 1 NC_007205.1 hydroxyacylglutathione hydrolase cytoplasmic 220771 gloB 3517547 gloB Candidatus Pelagibacter ubique HTCC1062 hydroxyacylglutathione hydrolase cytoplasmic YP_265643.1 220052 D 335992 CDS YP_265644.1 71082925 3517548 220837..221241 1 NC_007205.1 50S ribosomal protein L21 221241 rplU 3517548 rplU Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L21 YP_265644.1 220837 D 335992 CDS YP_265645.1 71082926 3517549 221254..221508 1 NC_007205.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 221508 rpmA 3517549 rpmA Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L27 YP_265645.1 221254 D 335992 CDS YP_265646.1 71082927 3517550 221539..222522 1 NC_007205.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 222522 obgE 3517550 obgE Candidatus Pelagibacter ubique HTCC1062 GTPase ObgE YP_265646.1 221539 D 335992 CDS YP_265647.1 71082928 3517551 222512..223618 1 NC_007205.1 glutamate 5-kinase 223618 proB 3517551 proB Candidatus Pelagibacter ubique HTCC1062 glutamate 5-kinase YP_265647.1 222512 D 335992 CDS YP_265648.1 71082929 3517552 223620..224870 1 NC_007205.1 gamma-glutamyl phosphate reductase 224870 proA 3517552 proA Candidatus Pelagibacter ubique HTCC1062 gamma-glutamyl phosphate reductase YP_265648.1 223620 D 335992 CDS YP_265649.1 71082930 3517553 224851..225393 1 NC_007205.1 nicotinate-nucleotide adenylyltransferase 225393 ybeN 3517553 ybeN Candidatus Pelagibacter ubique HTCC1062 nicotinate-nucleotide adenylyltransferase YP_265649.1 224851 D 335992 CDS YP_265650.1 71082931 3517554 225411..225761 1 NC_007205.1 iojap-like protein 225761 ybeB 3517554 ybeB Candidatus Pelagibacter ubique HTCC1062 iojap-like protein YP_265650.1 225411 D 335992 CDS YP_265651.1 71082932 3517555 225758..226897 1 NC_007205.1 tail-specific proteinase 226897 ctpA 3517555 ctpA Candidatus Pelagibacter ubique HTCC1062 tail-specific proteinase YP_265651.1 225758 D 335992 CDS YP_265652.1 71082933 3517556 226898..227374 1 NC_007205.1 (di)nucleoside polyphosphate hydrolase 227374 nudH 3517556 nudH Candidatus Pelagibacter ubique HTCC1062 (di)nucleoside polyphosphate hydrolase YP_265652.1 226898 D 335992 CDS YP_265653.1 71082934 3517557 complement(227367..227759) 1 NC_007205.1 ATP synthase F1 subunit epsilon 227759 atpC 3517557 atpC Candidatus Pelagibacter ubique HTCC1062 ATP synthase F1 subunit epsilon YP_265653.1 227367 R 335992 CDS YP_265654.1 71082935 3517558 complement(227759..229177) 1 NC_007205.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 229177 atpD 3517558 atpD Candidatus Pelagibacter ubique HTCC1062 ATP synthase F0F1 subunit beta YP_265654.1 227759 R 335992 CDS YP_265655.1 71082936 3517559 complement(229180..230055) 1 NC_007205.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 230055 atpG 3517559 atpG Candidatus Pelagibacter ubique HTCC1062 ATP synthase F0F1 subunit gamma YP_265655.1 229180 R 335992 CDS YP_265656.1 71082937 3517560 complement(230059..231594) 1 NC_007205.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 231594 atpA 3517560 atpA Candidatus Pelagibacter ubique HTCC1062 ATP synthase F0F1 subunit alpha YP_265656.1 230059 R 335992 CDS YP_265657.1 71082938 3517561 complement(231595..232152) 1 NC_007205.1 H+-transporting two-sector ATPase (F0F1-type ATP synthase) delta chain 232152 atpH 3517561 atpH Candidatus Pelagibacter ubique HTCC1062 H+-transporting two-sector ATPase (F0F1-type ATP synthase) delta chain YP_265657.1 231595 R 335992 CDS YP_265658.1 71082939 3517562 complement(232263..234218) 1 NC_007205.1 primosomal protein N 234218 priA 3517562 priA Candidatus Pelagibacter ubique HTCC1062 primosomal protein N YP_265658.1 232263 R 335992 CDS YP_265659.1 71082940 3517563 complement(234241..235641) 1 NC_007205.1 dihydrolipoyl dehydrogenase 235641 pdhD 3517563 pdhD Candidatus Pelagibacter ubique HTCC1062 dihydrolipoyl dehydrogenase YP_265659.1 234241 R 335992 CDS YP_265660.1 71082941 3517564 complement(235642..236919) 1 NC_007205.1 2-oxoglutarate dehydrogenase E2 236919 sucB 3517564 sucB Candidatus Pelagibacter ubique HTCC1062 2-oxoglutarate dehydrogenase E2 YP_265660.1 235642 R 335992 CDS YP_265661.1 71082942 3517565 complement(236922..239825) 1 NC_007205.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 239825 sucA 3517565 sucA Candidatus Pelagibacter ubique HTCC1062 2-oxoglutarate dehydrogenase E1 YP_265661.1 236922 R 335992 CDS YP_265662.1 71082943 3517566 complement(239860..240735) 1 NC_007205.1 succinyl-CoA synthetase subunit alpha (SCS-alpha) 240735 sucD 3517566 sucD Candidatus Pelagibacter ubique HTCC1062 succinyl-CoA synthetase subunit alpha (SCS-alpha) YP_265662.1 239860 R 335992 CDS YP_265663.1 71082944 3517567 complement(240737..241897) 1 NC_007205.1 succinyl-CoA synthetase subunit beta (SCS-beta) 241897 sucC 3517567 sucC Candidatus Pelagibacter ubique HTCC1062 succinyl-CoA synthetase subunit beta (SCS-beta) YP_265663.1 240737 R 335992 CDS YP_265664.1 71082945 3517568 complement(241897..242859) 1 NC_007205.1 malate dehydrogenase 242859 mdh 3517568 mdh Candidatus Pelagibacter ubique HTCC1062 malate dehydrogenase YP_265664.1 241897 R 335992 CDS YP_265665.1 71082946 3517569 complement(242868..244361) 1 NC_007205.1 methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH) 244361 mmsA 3517569 mmsA Candidatus Pelagibacter ubique HTCC1062 methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH) YP_265665.1 242868 R 335992 CDS YP_265666.1 71082947 3517570 complement(244386..245159) 1 NC_007205.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 245159 sdhB 3517570 sdhB Candidatus Pelagibacter ubique HTCC1062 succinate dehydrogenase iron-sulfur subunit YP_265666.1 244386 R 335992 CDS YP_265667.1 71082948 3517571 complement(245159..246931) 1 NC_007205.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 246931 sdhA 3517571 sdhA Candidatus Pelagibacter ubique HTCC1062 succinate dehydrogenase flavoprotein subunit YP_265667.1 245159 R 335992 CDS YP_265668.1 71082949 3517572 complement(246931..247257) 1 NC_007205.1 membrane portion of succinate dehydrogenase 247257 3517572 SAR11_0244 Candidatus Pelagibacter ubique HTCC1062 membrane portion of succinate dehydrogenase YP_265668.1 246931 R 335992 CDS YP_265669.1 71082950 3517573 complement(247259..247642) 1 NC_007205.1 succinate dehydrogenase cytochrome b 247642 sdhC 3517573 sdhC Candidatus Pelagibacter ubique HTCC1062 succinate dehydrogenase cytochrome b YP_265669.1 247259 R 335992 CDS YP_265670.1 71082951 3517574 complement(247635..248636) 1 NC_007205.1 aspartate-semialdehyde dehydrogenase 248636 asd 3517574 asd Candidatus Pelagibacter ubique HTCC1062 aspartate-semialdehyde dehydrogenase YP_265670.1 247635 R 335992 CDS YP_265671.1 71082952 3517575 complement(248657..249766) 1 NC_007205.1 DmdA; DMSP demethylase; in Silicibacter knockout of this gene results in an inability to convert DMSP to methanethiol which is restored with a cloned copy of the gene; dimethyl sulfoniopropionate demethylase 249766 dmdA 3517575 dmdA Candidatus Pelagibacter ubique HTCC1062 dimethyl sulfoniopropionate demethylase YP_265671.1 248657 R 335992 CDS YP_265672.1 71082953 3517576 complement(249763..250539) 1 NC_007205.1 alpha/beta hydrolase fold family; hydrolase 250539 mhpC 3517576 mhpC Candidatus Pelagibacter ubique HTCC1062 hydrolase YP_265672.1 249763 R 335992 CDS YP_265673.1 71082954 3517577 complement(250536..252164) 1 NC_007205.1 acyl-CoA synthetase 252164 fadD 3517577 fadD Candidatus Pelagibacter ubique HTCC1062 acyl-CoA synthetase YP_265673.1 250536 R 335992 CDS YP_265674.1 71082955 3517578 complement(252166..253929) 1 NC_007205.1 acyl-CoA dehydrogenase 253929 mmgC 3517578 mmgC Candidatus Pelagibacter ubique HTCC1062 acyl-CoA dehydrogenase YP_265674.1 252166 R 335992 CDS YP_265675.1 71082956 3517579 complement(253956..255062) 1 NC_007205.1 3-isopropylmalate dehydrogenase 255062 leuB 3517579 leuB Candidatus Pelagibacter ubique HTCC1062 3-isopropylmalate dehydrogenase YP_265675.1 253956 R 335992 CDS YP_265676.1 71082957 3517580 complement(255049..255660) 1 NC_007205.1 3-isopropylmalate dehydratase 255660 leuD 3517580 leuD Candidatus Pelagibacter ubique HTCC1062 3-isopropylmalate dehydratase YP_265676.1 255049 R 335992 CDS YP_265677.1 71082958 3517581 complement(255662..257065) 1 NC_007205.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 257065 leuC 3517581 leuC Candidatus Pelagibacter ubique HTCC1062 isopropylmalate isomerase large subunit YP_265677.1 255662 R 335992 CDS YP_265678.1 71082959 3517582 complement(257077..257571) 1 NC_007205.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 257571 rplS 3517582 rplS Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L19 YP_265678.1 257077 R 335992 CDS YP_265679.1 71082960 3517583 complement(257588..258274) 1 NC_007205.1 tRNA (guanine-N(1)-)-methyltransferase 258274 trmD 3517583 trmD Candidatus Pelagibacter ubique HTCC1062 tRNA (guanine-N(1)-)-methyltransferase YP_265679.1 257588 R 335992 CDS YP_265680.1 71082961 3517584 complement(258283..258816) 1 NC_007205.1 30S ribosomal protein S16 258816 rpsP 3517584 rpsP Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S16 YP_265680.1 258283 R 335992 CDS YP_265681.1 71082962 3517585 complement(258831..260189) 1 NC_007205.1 signal recognition particle protein 260189 ffh 3517585 ffh Candidatus Pelagibacter ubique HTCC1062 signal recognition particle protein YP_265681.1 258831 R 335992 CDS YP_265682.1 71082963 3517586 260349..261173 1 NC_007205.1 diaminopimelate epimerase 261173 dapF 3517586 dapF Candidatus Pelagibacter ubique HTCC1062 diaminopimelate epimerase YP_265682.1 260349 D 335992 CDS YP_265683.1 71082964 3517587 261173..262090 1 NC_007205.1 cell division particle 262090 ftsY 3517587 ftsY Candidatus Pelagibacter ubique HTCC1062 cell division particle YP_265683.1 261173 D 335992 CDS YP_265684.1 71082965 3517588 complement(262083..262646) 1 NC_007205.1 hypothetical protein 262646 3517588 SAR11_0259 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265684.1 262083 R 335992 CDS YP_265685.1 71082966 3517589 complement(262705..263598) 1 NC_007205.1 Drug/Metabolite Exporter family; transporter 263598 3517589 SAR11_0260 Candidatus Pelagibacter ubique HTCC1062 transporter YP_265685.1 262705 R 335992 CDS YP_265686.1 71082967 3517590 complement(263611..263790) 1 NC_007205.1 transmembrane protein 263790 3517590 SAR11_0262 Candidatus Pelagibacter ubique HTCC1062 transmembrane protein YP_265686.1 263611 R 335992 CDS YP_265687.1 71082968 3517591 complement(263780..265117) 1 NC_007205.1 unknown specificity; similar to gatA; amidase 265117 3517591 SAR11_0263 Candidatus Pelagibacter ubique HTCC1062 amidase YP_265687.1 263780 R 335992 CDS YP_265688.1 71082969 3517592 complement(265128..266489) 1 NC_007205.1 large chain; mannitol transporter 266489 3517592 SAR11_0264 Candidatus Pelagibacter ubique HTCC1062 mannitol transporter YP_265688.1 265128 R 335992 CDS YP_265689.1 71082970 3517593 complement(266479..267063) 1 NC_007205.1 small chain; mannitol transporter 267063 3517593 SAR11_0265 Candidatus Pelagibacter ubique HTCC1062 mannitol transporter YP_265689.1 266479 R 335992 CDS YP_265690.1 71082971 3517594 complement(267155..268312) 1 NC_007205.1 TRAP dicarboxylate transporter - DctP subunit (mannitol/chloroaromatic compounds) 268312 3517594 SAR11_0266 Candidatus Pelagibacter ubique HTCC1062 TRAP dicarboxylate transporter - DctP subunit (mannitol/chloroaromatic compounds) YP_265690.1 267155 R 335992 CDS YP_265691.1 71082972 3517595 complement(268433..269506) 1 NC_007205.1 ATP-binding protein, molybdenum/tungsten binding; ABC sugar transporter 269506 msmX 3517595 msmX Candidatus Pelagibacter ubique HTCC1062 ABC sugar transporter YP_265691.1 268433 R 335992 CDS YP_265692.1 71082973 3517596 complement(269499..270578) 1 NC_007205.1 ATP-binding protein, molybdenum/tungsten binding; ABC sugar transporter 270578 msmX2 3517596 msmX2 Candidatus Pelagibacter ubique HTCC1062 ABC sugar transporter YP_265692.1 269499 R 335992 CDS YP_265693.1 71082974 3517597 complement(270578..271426) 1 NC_007205.1 inner membrane component; ABC transporter 271426 ycjP 3517597 ycjP Candidatus Pelagibacter ubique HTCC1062 ABC transporter YP_265693.1 270578 R 335992 CDS YP_265694.1 71082975 3517598 complement(271429..272289) 1 NC_007205.1 binding-protein dependent transport system inner membrane protein 272289 3517598 SAR11_0270 Candidatus Pelagibacter ubique HTCC1062 binding-protein dependent transport system inner membrane protein YP_265694.1 271429 R 335992 CDS YP_265695.1 71082976 3517599 complement(272358..273893) 1 NC_007205.1 ABC transporter substrate-binding protein 273893 3517599 SAR11_0271 Candidatus Pelagibacter ubique HTCC1062 ABC transporter substrate-binding protein YP_265695.1 272358 R 335992 CDS YP_265696.2 304570541 3517600 complement(273915..274976) 1 NC_007205.1 alcohol dehydrogenase 274976 adhP 3517600 adhP Candidatus Pelagibacter ubique HTCC1062 alcohol dehydrogenase YP_265696.2 273915 R 335992 CDS YP_265697.1 71082978 3517601 275137..276219 1 NC_007205.1 transcriptional regulator 276219 stc 3517601 stc Candidatus Pelagibacter ubique HTCC1062 transcriptional regulator YP_265697.1 275137 D 335992 CDS YP_265698.1 71082979 3517602 complement(276222..277439) 1 NC_007205.1 major facilitator superfamily transporter 277439 3517602 SAR11_0274 Candidatus Pelagibacter ubique HTCC1062 major facilitator superfamily transporter YP_265698.1 276222 R 335992 CDS YP_265699.1 71082980 3517603 complement(277460..278413) 1 NC_007205.1 dehydrogenase 278413 3517603 SAR11_0275 Candidatus Pelagibacter ubique HTCC1062 dehydrogenase YP_265699.1 277460 R 335992 CDS YP_265700.1 71082981 3517604 complement(278416..279711) 1 NC_007205.1 (S)-2-hydroxy-acid oxidase 279711 glcF 3517604 glcF Candidatus Pelagibacter ubique HTCC1062 (S)-2-hydroxy-acid oxidase YP_265700.1 278416 R 335992 CDS YP_265701.1 71082982 3517605 complement(279711..280979) 1 NC_007205.1 GlcE; (S)-2-hydroxy-acid oxidase 280979 glcE 3517605 glcE Candidatus Pelagibacter ubique HTCC1062 (S)-2-hydroxy-acid oxidase YP_265701.1 279711 R 335992 CDS YP_265702.1 71082983 3517606 complement(280945..282441) 1 NC_007205.1 GlcD; (S)-2-hydroxy-acid oxidase 282441 glcD 3517606 glcD Candidatus Pelagibacter ubique HTCC1062 (S)-2-hydroxy-acid oxidase YP_265702.1 280945 R 335992 CDS YP_265703.1 71082984 3517607 complement(282447..283610) 1 NC_007205.1 aspartate transaminase 283610 aspC 3517607 aspC Candidatus Pelagibacter ubique HTCC1062 aspartate transaminase YP_265703.1 282447 R 335992 CDS YP_265704.1 71082985 3517608 complement(283684..284835) 1 NC_007205.1 IldD; l-lactate dehydrogenase 284835 ildD 3517608 ildD Candidatus Pelagibacter ubique HTCC1062 l-lactate dehydrogenase YP_265704.1 283684 R 335992 CDS YP_265705.1 71082986 3517609 complement(284844..285353) 1 NC_007205.1 hypothetical protein 285353 3517609 SAR11_0281 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265705.1 284844 R 335992 CDS YP_265706.1 71082987 3517610 complement(285354..285734) 1 NC_007205.1 hypothetical protein 285734 3517610 SAR11_0282 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265706.1 285354 R 335992 CDS YP_265707.1 71082988 3517611 complement(285731..286252) 1 NC_007205.1 cytochrome C biogenesis protein ccmG 286252 ccmG 3517611 ccmG Candidatus Pelagibacter ubique HTCC1062 cytochrome C biogenesis protein ccmG YP_265707.1 285731 R 335992 CDS YP_265708.1 71082989 3517612 complement(286249..288126) 1 NC_007205.1 cytochrome c-type biogenesis protein 288126 ccmF 3517612 ccmF Candidatus Pelagibacter ubique HTCC1062 cytochrome c-type biogenesis protein YP_265708.1 286249 R 335992 CDS YP_265709.1 71082990 3517613 complement(288128..288547) 1 NC_007205.1 cytochrome c-type biogenesis protein 288547 ccmE 3517613 ccmE Candidatus Pelagibacter ubique HTCC1062 cytochrome c-type biogenesis protein YP_265709.1 288128 R 335992 CDS YP_265710.1 71082991 3517614 complement(288558..288785) 1 NC_007205.1 CcmD; heme exporter protein D 288785 ccmD 3517614 ccmD Candidatus Pelagibacter ubique HTCC1062 heme exporter protein D YP_265710.1 288558 R 335992 CDS YP_265711.1 71082992 3517615 complement(288782..289492) 1 NC_007205.1 CcmC; heme exporter protein 289492 ccmC 3517615 ccmC Candidatus Pelagibacter ubique HTCC1062 heme exporter protein YP_265711.1 288782 R 335992 CDS YP_265712.1 71082993 3517616 complement(289675..289995) 1 NC_007205.1 hypothetical protein 289995 ccmB 3517616 ccmB Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265712.1 289675 R 335992 CDS YP_265713.1 71082994 3517617 290074..290625 1 NC_007205.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 290625 yciB 3517617 yciB Candidatus Pelagibacter ubique HTCC1062 intracellular septation protein A YP_265713.1 290074 D 335992 CDS YP_265714.1 71082995 3517618 290618..290962 1 NC_007205.1 hypothetical protein 290962 3517618 SAR11_0290 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265714.1 290618 D 335992 CDS YP_265715.1 71082996 3517619 complement(290968..291666) 1 NC_007205.1 hypothetical protein 291666 ybhL 3517619 ybhL Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265715.1 290968 R 335992 CDS YP_265716.1 71082997 3517620 291790..292827 1 NC_007205.1 aldo/keto reductase 292827 tas 3517620 tas Candidatus Pelagibacter ubique HTCC1062 aldo/keto reductase YP_265716.1 291790 D 335992 CDS YP_265717.1 71082998 3517621 292818..293324 1 NC_007205.1 hypothetical protein 293324 3517621 SAR11_0293 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265717.1 292818 D 335992 CDS YP_265718.1 71082999 3517622 293329..294516 1 NC_007205.1 argininosuccinate synthase 294516 argG 3517622 argG Candidatus Pelagibacter ubique HTCC1062 argininosuccinate synthase YP_265718.1 293329 D 335992 CDS YP_265719.1 71083000 3517623 294521..295138 1 NC_007205.1 polyketide biosynthesis dithiol-disulfide isomerase 295138 frnE 3517623 frnE Candidatus Pelagibacter ubique HTCC1062 polyketide biosynthesis dithiol-disulfide isomerase YP_265719.1 294521 D 335992 CDS YP_265720.1 71083001 3517624 295195..295653 1 NC_007205.1 transmembrane protein 295653 3517624 SAR11_0296 Candidatus Pelagibacter ubique HTCC1062 transmembrane protein YP_265720.1 295195 D 335992 CDS YP_265721.1 71083002 3517625 295653..296033 1 NC_007205.1 phosphate-starvation-inducible E 296033 3517625 SAR11_0297 Candidatus Pelagibacter ubique HTCC1062 phosphate-starvation-inducible E YP_265721.1 295653 D 335992 CDS YP_265722.1 71083003 3517626 296040..297182 1 NC_007205.1 possible blue light photoreceptor cryptochrome; DNA photolyase-like protein 297182 3517626 SAR11_0298 Candidatus Pelagibacter ubique HTCC1062 DNA photolyase-like protein YP_265722.1 296040 D 335992 CDS YP_265723.1 71083004 3517627 complement(297179..297400) 1 NC_007205.1 transmembrane protein 297400 3517627 SAR11_0299 Candidatus Pelagibacter ubique HTCC1062 transmembrane protein YP_265723.1 297179 R 335992 CDS YP_265724.1 71083005 3517628 complement(297397..298116) 1 NC_007205.1 glutamine amidotransferase 298116 3517628 SAR11_0300 Candidatus Pelagibacter ubique HTCC1062 glutamine amidotransferase YP_265724.1 297397 R 335992 CDS YP_265725.1 71083006 3517629 complement(298160..298768) 1 NC_007205.1 multiple antibiotic resistance protein MarC 298768 marC 3517629 marC Candidatus Pelagibacter ubique HTCC1062 multiple antibiotic resistance protein MarC YP_265725.1 298160 R 335992 CDS YP_265726.1 71083007 3517630 complement(298810..299223) 1 NC_007205.1 DedA family, yqaA; transmembrane protein 299223 yqaA 3517630 yqaA Candidatus Pelagibacter ubique HTCC1062 transmembrane protein YP_265726.1 298810 R 335992 CDS YP_265727.1 71083008 3517631 complement(299342..300832) 1 NC_007205.1 deoxyribodipyrimidine photolyase-like protein 300832 3517631 SAR11_0303 Candidatus Pelagibacter ubique HTCC1062 deoxyribodipyrimidine photolyase-like protein YP_265727.1 299342 R 335992 CDS YP_265728.2 304570542 3517632 300860..301570 1 NC_007205.1 unknown specificity; short chain dehydrogenase 301570 3517632 SAR11_0304 Candidatus Pelagibacter ubique HTCC1062 short chain dehydrogenase YP_265728.2 300860 D 335992 CDS YP_265729.1 71083010 3517633 301545..302636 1 NC_007205.1 glucose dehydrogenase 302636 yliI 3517633 yliI Candidatus Pelagibacter ubique HTCC1062 glucose dehydrogenase YP_265729.1 301545 D 335992 CDS YP_265730.1 71083011 3517634 complement(302639..303691) 1 NC_007205.1 hypothetical protein 303691 3517634 SAR11_0306 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265730.1 302639 R 335992 CDS YP_265731.1 71083012 3517635 complement(303706..304551) 1 NC_007205.1 methylenetetrahydrofolate dehydrogenase 304551 folD 3517635 folD Candidatus Pelagibacter ubique HTCC1062 methylenetetrahydrofolate dehydrogenase YP_265731.1 303706 R 335992 CDS YP_265732.1 71083013 3517636 complement(304560..304850) 1 NC_007205.1 similar to Rhodopseudomonas palustris CGA009 gi|39647338|emb|CAE25859.1; hypothetical protein 304850 3517636 SAR11_1722 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265732.1 304560 R 335992 CDS YP_265733.1 71083014 3517637 complement(304847..305932) 1 NC_007205.1 mechanosensitive ion channel MscS 305932 3517637 SAR11_0308 Candidatus Pelagibacter ubique HTCC1062 mechanosensitive ion channel MscS YP_265733.1 304847 R 335992 CDS YP_265734.1 71083015 3517638 complement(305935..306633) 1 NC_007205.1 uroporphyrinogen III synthase HEM4 306633 hemD 3517638 hemD Candidatus Pelagibacter ubique HTCC1062 uroporphyrinogen III synthase HEM4 YP_265734.1 305935 R 335992 CDS YP_265735.1 71083016 3517639 complement(306635..307558) 1 NC_007205.1 hydroxymethylbilane synthase 307558 hemC 3517639 hemC Candidatus Pelagibacter ubique HTCC1062 hydroxymethylbilane synthase YP_265735.1 306635 R 335992 CDS YP_265736.1 71083017 3517640 307618..308691 1 NC_007205.1 O-sialoglycoprotein endopeptidase 308691 ygjD 3517640 ygjD Candidatus Pelagibacter ubique HTCC1062 O-sialoglycoprotein endopeptidase YP_265736.1 307618 D 335992 CDS YP_265737.1 71083018 3517641 308772..309617 1 NC_007205.1 sulfotransferase domain-containing protein 309617 3517641 SAR11_0312 Candidatus Pelagibacter ubique HTCC1062 sulfotransferase domain-containing protein YP_265737.1 308772 D 335992 CDS YP_265738.1 71083019 3517642 309643..310056 1 NC_007205.1 hypothetical protein 310056 3517642 SAR11_0313 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265738.1 309643 D 335992 CDS YP_265739.1 71083020 3517643 310070..312115 1 NC_007205.1 acetyl-CoA synthase 312115 acsA 3517643 acsA Candidatus Pelagibacter ubique HTCC1062 acetyl-CoA synthase YP_265739.1 310070 D 335992 CDS YP_265740.1 71083021 3517644 complement(312112..312735) 1 NC_007205.1 potential esterase 312735 3517644 SAR11_0315 Candidatus Pelagibacter ubique HTCC1062 potential esterase YP_265740.1 312112 R 335992 CDS YP_265741.1 71083022 3517645 312873..313133 1 NC_007205.1 hypothetical protein 313133 3517645 SAR11_1723 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265741.1 312873 D 335992 CDS YP_265742.1 71083023 3517646 313133..314941 1 NC_007205.1 SSF family Na(+)/solute symporter 314941 yjcG 3517646 yjcG Candidatus Pelagibacter ubique HTCC1062 SSF family Na(+)/solute symporter YP_265742.1 313133 D 335992 CDS YP_265743.1 71083024 3517647 315020..315376 1 NC_007205.1 hypothetical protein 315376 3517647 SAR11_1724 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265743.1 315020 D 335992 CDS YP_265744.1 71083025 3517648 315405..316064 1 NC_007205.1 ribulose-phosphate 3-epimerase 316064 rpe 3517648 rpe Candidatus Pelagibacter ubique HTCC1062 ribulose-phosphate 3-epimerase YP_265744.1 315405 D 335992 CDS YP_265745.1 71083026 3517649 316069..317679 1 NC_007205.1 hypothetical protein 317679 3517649 SAR11_0318 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265745.1 316069 D 335992 CDS YP_265746.1 71083027 3517650 317679..319214 1 NC_007205.1 bifunctional purine biosynthesis protein 319214 purH 3517650 purH Candidatus Pelagibacter ubique HTCC1062 bifunctional purine biosynthesis protein YP_265746.1 317679 D 335992 CDS YP_265747.1 71083028 3517651 complement(319204..319548) 1 NC_007205.1 pterin-4-alpha-carbinolamine dehydratase 319548 phhB 3517651 phhB Candidatus Pelagibacter ubique HTCC1062 pterin-4-alpha-carbinolamine dehydratase YP_265747.1 319204 R 335992 CDS YP_265748.1 71083029 3517653 319743..320384 1 NC_007205.1 similar to the N-terminal domain of Lon protease; hypothetical protein 320384 3517653 SAR11_0322 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265748.1 319743 D 335992 CDS YP_265749.1 71083030 3517654 complement(320387..321520) 1 NC_007205.1 ubiquinone biosynthesis monooxgenase COQ6 321520 ubiH 3517654 ubiH Candidatus Pelagibacter ubique HTCC1062 ubiquinone biosynthesis monooxgenase COQ6 YP_265749.1 320387 R 335992 CDS YP_265750.1 71083031 3517655 321546..323636 1 NC_007205.1 cell division protein 323636 ftsK 3517655 ftsK Candidatus Pelagibacter ubique HTCC1062 cell division protein YP_265750.1 321546 D 335992 CDS YP_265751.1 71083032 3517656 323636..324190 1 NC_007205.1 Outer membrane lipoprotein carrier protein 324190 3517656 SAR11_0325 Candidatus Pelagibacter ubique HTCC1062 Outer membrane lipoprotein carrier protein YP_265751.1 323636 D 335992 CDS YP_265752.1 71083033 3517657 complement(324191..324694) 1 NC_007205.1 acetyltransferase 324694 3517657 SAR11_0326 Candidatus Pelagibacter ubique HTCC1062 acetyltransferase YP_265752.1 324191 R 335992 CDS YP_265753.1 71083034 3517658 complement(324691..325056) 1 NC_007205.1 histidine triad (HIT) protein 325056 3517658 SAR11_0327 Candidatus Pelagibacter ubique HTCC1062 histidine triad (HIT) protein YP_265753.1 324691 R 335992 CDS YP_265754.1 71083035 3517659 complement(325056..325361) 1 NC_007205.1 phosphoribosyl-ATP diphosphatase 325361 hisE 3517659 hisE Candidatus Pelagibacter ubique HTCC1062 phosphoribosyl-ATP diphosphatase YP_265754.1 325056 R 335992 CDS YP_265755.1 71083036 3517660 complement(325364..326119) 1 NC_007205.1 imidazole glycerol phosphate synthase subunit HisF 326119 hisF 3517660 hisF Candidatus Pelagibacter ubique HTCC1062 imidazole glycerol phosphate synthase subunit HisF YP_265755.1 325364 R 335992 CDS YP_265756.1 71083037 3517661 complement(326112..326831) 1 NC_007205.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 326831 hisA 3517661 hisA Candidatus Pelagibacter ubique HTCC1062 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_265756.1 326112 R 335992 CDS YP_265757.1 71083038 3517662 complement(326834..327460) 1 NC_007205.1 imidazole glycerol phosphate synthase subunit of hisH 327460 hisH 3517662 hisH Candidatus Pelagibacter ubique HTCC1062 imidazole glycerol phosphate synthase subunit of hisH YP_265757.1 326834 R 335992 CDS YP_265758.1 71083039 3517663 complement(327466..328056) 1 NC_007205.1 half of bifunctional hisB; imidazoleglycerol-phosphate dehydratase 328056 hisB 3517663 hisB Candidatus Pelagibacter ubique HTCC1062 imidazoleglycerol-phosphate dehydratase YP_265758.1 327466 R 335992 CDS YP_265759.1 71083040 3517664 328148..328663 1 NC_007205.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 328663 hslV 3517664 hslV Candidatus Pelagibacter ubique HTCC1062 ATP-dependent protease peptidase subunit YP_265759.1 328148 D 335992 CDS YP_265760.1 71083041 3517665 328663..330030 1 NC_007205.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 330030 hslU 3517665 hslU Candidatus Pelagibacter ubique HTCC1062 ATP-dependent protease ATP-binding subunit HslU YP_265760.1 328663 D 335992 CDS YP_265761.1 71083042 3517666 complement(330020..330541) 1 NC_007205.1 Smr (small MutS related) protein 330541 3517666 SAR11_0335 Candidatus Pelagibacter ubique HTCC1062 Smr (small MutS related) protein YP_265761.1 330020 R 335992 CDS YP_265762.1 71083043 3517667 complement(330542..331135) 1 NC_007205.1 translocase 331135 3517667 SAR11_0336 Candidatus Pelagibacter ubique HTCC1062 translocase YP_265762.1 330542 R 335992 CDS YP_265763.1 71083044 3517668 331194..331616 1 NC_007205.1 cytoplasmic membrane protein 331616 fxsA 3517668 fxsA Candidatus Pelagibacter ubique HTCC1062 cytoplasmic membrane protein YP_265763.1 331194 D 335992 CDS YP_265764.1 71083045 3517669 331600..332022 1 NC_007205.1 SecB; protein export chaperone 332022 secB 3517669 secB Candidatus Pelagibacter ubique HTCC1062 protein export chaperone YP_265764.1 331600 D 335992 CDS YP_265765.1 71083046 3517670 complement(332015..332686) 1 NC_007205.1 epsilon chain, dnaQ; DNA polymerase III 332686 dnaQ 3517670 dnaQ Candidatus Pelagibacter ubique HTCC1062 DNA polymerase III YP_265765.1 332015 R 335992 CDS YP_265766.1 71083047 3517671 complement(332688..333257) 1 NC_007205.1 dephospho-CoA kinase 333257 coaE 3517671 coaE Candidatus Pelagibacter ubique HTCC1062 dephospho-CoA kinase YP_265766.1 332688 R 335992 CDS YP_265767.1 71083048 3517672 complement(333254..334051) 1 NC_007205.1 shikimate 5-dehydrogenase 334051 aroE 3517672 aroE Candidatus Pelagibacter ubique HTCC1062 shikimate 5-dehydrogenase YP_265767.1 333254 R 335992 CDS YP_265768.1 71083049 3517673 complement(334048..334635) 1 NC_007205.1 Maf-like protein 334635 orfE 3517673 orfE Candidatus Pelagibacter ubique HTCC1062 Maf-like protein YP_265768.1 334048 R 335992 CDS YP_265769.1 71083050 3517674 complement(334628..335452) 1 NC_007205.1 hypothetical protein 335452 3517674 SAR11_0343 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265769.1 334628 R 335992 CDS YP_265770.2 304570543 3517675 335737..336738 1 NC_007205.1 uroporphyrinogen decarboxylase 336738 hemE 3517675 hemE Candidatus Pelagibacter ubique HTCC1062 uroporphyrinogen decarboxylase YP_265770.2 335737 D 335992 CDS YP_265771.1 71083052 3517676 336739..337773 1 NC_007205.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 337773 hemH 3517676 hemH Candidatus Pelagibacter ubique HTCC1062 ferrochelatase YP_265771.1 336739 D 335992 CDS YP_265772.1 71083053 3517677 337766..338200 1 NC_007205.1 cytochrome functioning/assembly related protein 338200 3517677 SAR11_0347 Candidatus Pelagibacter ubique HTCC1062 cytochrome functioning/assembly related protein YP_265772.1 337766 D 335992 CDS YP_265773.1 71083054 3517678 338267..339535 1 NC_007205.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 339535 rho 3517678 rho Candidatus Pelagibacter ubique HTCC1062 transcription termination factor Rho YP_265773.1 338267 D 335992 CDS YP_265774.1 71083055 3517679 339853..341526 1 NC_007205.1 SPINDLY family; O-linked N-acetylglucosamine transferase 341526 3517679 SAR11_0349 Candidatus Pelagibacter ubique HTCC1062 O-linked N-acetylglucosamine transferase YP_265774.1 339853 D 335992 CDS YP_265775.1 71083056 3517680 341586..342917 1 NC_007205.1 tRNA modification GTPase 342917 trmE 3517680 trmE Candidatus Pelagibacter ubique HTCC1062 tRNA modification GTPase YP_265775.1 341586 D 335992 CDS YP_265776.1 71083057 3517681 343083..344954 1 NC_007205.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 344954 gidA 3517681 gidA Candidatus Pelagibacter ubique HTCC1062 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_265776.1 343083 D 335992 CDS YP_265777.1 71083058 3517682 344954..345595 1 NC_007205.1 glucose inhibited division protein 345595 gidB 3517682 gidB Candidatus Pelagibacter ubique HTCC1062 glucose inhibited division protein YP_265777.1 344954 D 335992 CDS YP_265778.1 71083059 3517683 345604..346398 1 NC_007205.1 ParA family ATPase for plasmid partitioning and other plasmid related functions 346398 3517683 SAR11_0353 Candidatus Pelagibacter ubique HTCC1062 ParA family ATPase for plasmid partitioning and other plasmid related functions YP_265778.1 345604 D 335992 CDS YP_265779.1 71083060 3517684 346398..347246 1 NC_007205.1 chromosome partitioning protein 347246 parB 3517684 parB Candidatus Pelagibacter ubique HTCC1062 chromosome partitioning protein YP_265779.1 346398 D 335992 CDS YP_265780.1 71083061 3517685 complement(347236..348231) 1 NC_007205.1 delta subunit, holA; DNA-directed DNA polymerase III 348231 holA 3517685 holA Candidatus Pelagibacter ubique HTCC1062 DNA-directed DNA polymerase III YP_265780.1 347236 R 335992 CDS YP_265781.1 71083062 3517686 complement(348228..348692) 1 NC_007205.1 hypothetical protein 348692 3517686 SAR11_0356 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265781.1 348228 R 335992 CDS YP_265782.1 71083063 3517687 complement(348696..351230) 1 NC_007205.1 leucyl-tRNA synthetase 351230 leuS 3517687 leuS Candidatus Pelagibacter ubique HTCC1062 leucyl-tRNA synthetase YP_265782.1 348696 R 335992 CDS YP_265783.1 71083064 3517688 complement(351261..351818) 1 NC_007205.1 hypothetical protein 351818 3517688 SAR11_0358 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265783.1 351261 R 335992 CDS YP_265784.1 71083065 3517689 352028..353017 1 NC_007205.1 porin 353017 3517689 SAR11_0359 Candidatus Pelagibacter ubique HTCC1062 porin YP_265784.1 352028 D 335992 CDS YP_265785.1 71083066 3517690 complement(353054..353596) 1 NC_007205.1 thiamine monophosphate synthase 353596 3517690 SAR11_0360 Candidatus Pelagibacter ubique HTCC1062 thiamine monophosphate synthase YP_265785.1 353054 R 335992 CDS YP_265786.1 71083067 3517691 353591..354241 1 NC_007205.1 hypothetical protein 354241 yggS 3517691 yggS Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265786.1 353591 D 335992 CDS YP_265787.1 71083068 3517692 complement(354238..354726) 1 NC_007205.1 hypothetical protein 354726 3517692 SAR11_0362 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265787.1 354238 R 335992 CDS YP_265788.1 71083069 3517693 354747..355328 1 NC_007205.1 C-terminal effector; Bipartite response regulator 355328 3517693 SAR11_0363 Candidatus Pelagibacter ubique HTCC1062 Bipartite response regulator YP_265788.1 354747 D 335992 CDS YP_265789.1 71083070 3517694 complement(355334..356263) 1 NC_007205.1 fructokinase 356263 frk 3517694 frk Candidatus Pelagibacter ubique HTCC1062 fructokinase YP_265789.1 355334 R 335992 CDS YP_265790.1 71083071 3517695 complement(356265..356918) 1 NC_007205.1 endonuclease III 356918 nth 3517695 nth Candidatus Pelagibacter ubique HTCC1062 endonuclease III YP_265790.1 356265 R 335992 CDS YP_265791.1 71083072 3517696 complement(356918..357694) 1 NC_007205.1 dihydrodipicolinate reductase 357694 dapB 3517696 dapB Candidatus Pelagibacter ubique HTCC1062 dihydrodipicolinate reductase YP_265791.1 356918 R 335992 CDS YP_265792.1 71083073 3517697 complement(357731..358861) 1 NC_007205.1 DnaJ; chaperone protein 358861 3517697 SAR11_0367 Candidatus Pelagibacter ubique HTCC1062 chaperone protein YP_265792.1 357731 R 335992 CDS YP_265793.1 71083074 3517698 complement(358894..360837) 1 NC_007205.1 DnaK (Heat shock protein 70, hsp70); chaperone protein 360837 dnaK 3517698 dnaK Candidatus Pelagibacter ubique HTCC1062 chaperone protein YP_265793.1 358894 R 335992 CDS YP_265794.2 304570544 3517699 complement(360900..361535) 1 NC_007205.1 heat shock protein GrpE 361535 grpE 3517699 grpE Candidatus Pelagibacter ubique HTCC1062 heat shock protein GrpE YP_265794.2 360900 R 335992 CDS YP_265795.1 71083076 3517700 361572..362174 1 NC_007205.1 HAM1-like protein 362174 3517700 SAR11_0370 Candidatus Pelagibacter ubique HTCC1062 HAM1-like protein YP_265795.1 361572 D 335992 CDS YP_265796.1 71083077 3517701 complement(362158..363309) 1 NC_007205.1 transmembrane receptor 363309 3517701 SAR11_0371 Candidatus Pelagibacter ubique HTCC1062 transmembrane receptor YP_265796.1 362158 R 335992 CDS YP_265797.1 71083078 3517702 363342..364205 1 NC_007205.1 methylase or methyltransferase 364205 3517702 SAR11_0372 Candidatus Pelagibacter ubique HTCC1062 methylase or methyltransferase YP_265797.1 363342 D 335992 CDS YP_265798.1 71083079 3517703 364195..364788 1 NC_007205.1 possible periplasmic protein; phospholipid-binding domain-containing protein 364788 3517703 SAR11_0374 Candidatus Pelagibacter ubique HTCC1062 phospholipid-binding domain-containing protein YP_265798.1 364195 D 335992 CDS YP_265799.2 162286707 3517704 complement(364785..367073) 1 NC_007205.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 367073 maeB 3517704 maeB Candidatus Pelagibacter ubique HTCC1062 malic enzyme YP_265799.2 364785 R 335992 CDS YP_265800.1 71083081 3517705 367124..368650 1 NC_007205.1 virulence factor MVIN-like 368650 mviN 3517705 mviN Candidatus Pelagibacter ubique HTCC1062 virulence factor MVIN-like YP_265800.1 367124 D 335992 CDS YP_265801.1 71083082 3517706 368652..369653 1 NC_007205.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 369653 trpS 3517706 trpS Candidatus Pelagibacter ubique HTCC1062 tryptophanyl-tRNA synthetase YP_265801.1 368652 D 335992 CDS YP_265802.1 71083083 3517707 369707..370249 1 NC_007205.1 NifU-like domain-containing protein 370249 3517707 SAR11_0378 Candidatus Pelagibacter ubique HTCC1062 NifU-like domain-containing protein YP_265802.1 369707 D 335992 CDS YP_265803.1 71083084 3517708 370252..371367 1 NC_007205.1 Bax protein (hydrolyses peptidoglycan) 371367 bax 3517708 bax Candidatus Pelagibacter ubique HTCC1062 Bax protein (hydrolyses peptidoglycan) YP_265803.1 370252 D 335992 CDS YP_265804.1 71083085 3517709 complement(371364..372284) 1 NC_007205.1 polysaccharide deacetylase 372284 cda1 3517709 cda1 Candidatus Pelagibacter ubique HTCC1062 polysaccharide deacetylase YP_265804.1 371364 R 335992 CDS YP_265805.1 71083086 3517710 372370..372756 1 NC_007205.1 similar to unknown environmental sequence; hypothetical protein 372756 3517710 SAR11_0381 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265805.1 372370 D 335992 CDS YP_265806.1 71083087 3517711 372766..373176 1 NC_007205.1 ferric uptake regulation protein 373176 fur 3517711 fur Candidatus Pelagibacter ubique HTCC1062 ferric uptake regulation protein YP_265806.1 372766 D 335992 CDS YP_265807.1 71083088 3517712 373181..374521 1 NC_007205.1 MiaB; tRNA-i(6)A37 modification enzyme 374521 miaB 3517712 miaB Candidatus Pelagibacter ubique HTCC1062 tRNA-i(6)A37 modification enzyme YP_265807.1 373181 D 335992 CDS YP_265808.1 71083089 3517713 374524..375525 1 NC_007205.1 PhoH-like protein 375525 phoH 3517713 phoH Candidatus Pelagibacter ubique HTCC1062 PhoH-like protein YP_265808.1 374524 D 335992 CDS YP_265809.1 71083090 3517714 375518..375979 1 NC_007205.1 hypothetical protein 375979 3517714 SAR11_0385 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265809.1 375518 D 335992 CDS YP_265810.1 71083091 3517715 375981..377525 1 NC_007205.1 apolipoprotein N-acyltransferase 377525 lnt 3517715 lnt Candidatus Pelagibacter ubique HTCC1062 apolipoprotein N-acyltransferase YP_265810.1 375981 D 335992 CDS YP_265811.1 71083092 3517716 377518..378687 1 NC_007205.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 378687 metK 3517716 metK Candidatus Pelagibacter ubique HTCC1062 S-adenosylmethionine synthetase YP_265811.1 377518 D 335992 CDS YP_265812.1 71083093 3517717 378786..380339 1 NC_007205.1 transcription termination factor 380339 nusA 3517717 nusA Candidatus Pelagibacter ubique HTCC1062 transcription termination factor YP_265812.1 378786 D 335992 CDS YP_265813.1 71083094 3517718 380350..382554 1 NC_007205.1 protein translation initiation factor 2 382554 infB 3517718 infB Candidatus Pelagibacter ubique HTCC1062 protein translation initiation factor 2 YP_265813.1 380350 D 335992 CDS YP_265814.1 71083095 3517719 382554..382922 1 NC_007205.1 ribosome-binding factor A 382922 rbfA 3517719 rbfA Candidatus Pelagibacter ubique HTCC1062 ribosome-binding factor A YP_265814.1 382554 D 335992 CDS YP_265815.1 71083096 3517720 382936..383184 1 NC_007205.1 30S ribosomal protein S15 383184 3517720 SAR11_0391 Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S15 YP_265815.1 382936 D 335992 CDS YP_265816.1 71083097 3517721 383206..385278 1 NC_007205.1 polynucleotide phosphorylase 385278 pnp 3517721 pnp Candidatus Pelagibacter ubique HTCC1062 polynucleotide phosphorylase YP_265816.1 383206 D 335992 CDS YP_265817.1 71083098 3517722 385353..386048 1 NC_007205.1 SAM-dependent methyltransferase 386048 3517722 SAR11_0393 Candidatus Pelagibacter ubique HTCC1062 SAM-dependent methyltransferase YP_265817.1 385353 D 335992 CDS YP_265818.1 71083099 3517723 complement(386111..386503) 1 NC_007205.1 hypothetical protein 386503 3517723 SAR11_0394 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265818.1 386111 R 335992 CDS YP_265819.1 71083100 3517724 complement(386597..387373) 1 NC_007205.1 enoyl-ACP reductase 387373 fabI 3517724 fabI Candidatus Pelagibacter ubique HTCC1062 enoyl-ACP reductase YP_265819.1 386597 R 335992 CDS YP_265820.1 71083101 3517725 complement(387383..388594) 1 NC_007205.1 3-oxoacyl-ACP synthase 388594 fabB 3517725 fabB Candidatus Pelagibacter ubique HTCC1062 3-oxoacyl-ACP synthase YP_265820.1 387383 R 335992 CDS YP_265821.1 71083102 3517726 complement(388594..389094) 1 NC_007205.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 389094 fabA 3517726 fabA Candidatus Pelagibacter ubique HTCC1062 3-hydroxydecanoyl-ACP dehydratase YP_265821.1 388594 R 335992 CDS YP_265822.1 71083103 3517727 389168..389596 1 NC_007205.1 Fur-like protein; ferric uptake regulator family protein 389596 3517727 SAR11_0398 Candidatus Pelagibacter ubique HTCC1062 ferric uptake regulator family protein YP_265822.1 389168 D 335992 CDS YP_265823.1 71083104 3517728 389701..390117 1 NC_007205.1 rubrerythrin 390117 rbr 3517728 rbr Candidatus Pelagibacter ubique HTCC1062 rubrerythrin YP_265823.1 389701 D 335992 CDS YP_265824.1 71083105 3517729 390175..391506 1 NC_007205.1 anaerobic glycerol-3-phosphate dehydrogenase subunit C 391506 glpC 3517729 glpC Candidatus Pelagibacter ubique HTCC1062 anaerobic glycerol-3-phosphate dehydrogenase subunit C YP_265824.1 390175 D 335992 CDS YP_265825.1 71083106 3517730 391509..392102 1 NC_007205.1 hypothetical protein 392102 3517730 SAR11_0401 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265825.1 391509 D 335992 CDS YP_265826.1 71083107 3517731 complement(392095..392544) 1 NC_007205.1 hypothetical protein 392544 3517731 SAR11_0402 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265826.1 392095 R 335992 CDS YP_265827.1 71083108 3517732 complement(392541..393296) 1 NC_007205.1 MoeB; molybdopterin biosynthesis protein 393296 moeB 3517732 moeB Candidatus Pelagibacter ubique HTCC1062 molybdopterin biosynthesis protein YP_265827.1 392541 R 335992 CDS YP_265828.2 304570545 3517733 complement(393293..393730) 1 NC_007205.1 deoxyuridine 5'-triphosphate nucleotidohydrolase 393730 dut 3517733 dut Candidatus Pelagibacter ubique HTCC1062 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_265828.2 393293 R 335992 CDS YP_265829.1 71083110 3517734 complement(393737..394942) 1 NC_007205.1 phosphopantothenoylcysteine decarboxylase 394942 dfp 3517734 dfp Candidatus Pelagibacter ubique HTCC1062 phosphopantothenoylcysteine decarboxylase YP_265829.1 393737 R 335992 CDS YP_265830.2 304570546 3517735 complement(394951..396519) 1 NC_007205.1 AarF; ubiquinone biosynthesis protein 396519 aarF 3517735 aarF Candidatus Pelagibacter ubique HTCC1062 ubiquinone biosynthesis protein YP_265830.2 394951 R 335992 CDS YP_265831.1 71083112 3517736 complement(396519..397223) 1 NC_007205.1 ubiquinone/menaquinone biosynthesis methyltransferase 397223 ubiE 3517736 ubiE Candidatus Pelagibacter ubique HTCC1062 ubiquinone/menaquinone biosynthesis methyltransferase YP_265831.1 396519 R 335992 CDS YP_265832.1 71083113 3517737 397259..398122 1 NC_007205.1 formamidopyrimidine-DNA glycosylase 398122 mutM 3517737 mutM Candidatus Pelagibacter ubique HTCC1062 formamidopyrimidine-DNA glycosylase YP_265832.1 397259 D 335992 CDS YP_265833.1 71083114 3517738 398173..398433 1 NC_007205.1 30S ribosomal protein S20 398433 rpsT 3517738 rpsT Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S20 YP_265833.1 398173 D 335992 CDS YP_265834.1 71083115 3517739 398915..400249 1 NC_007205.1 chromosome replication initiator DnaA 400249 dnaA 3517739 dnaA Candidatus Pelagibacter ubique HTCC1062 chromosome replication initiator DnaA YP_265834.1 398915 D 335992 CDS YP_265835.2 304570547 3517740 400239..401351 1 NC_007205.1 beta chain, dnaN; DNA polymerase III 401351 dnaN 3517740 dnaN Candidatus Pelagibacter ubique HTCC1062 DNA polymerase III YP_265835.2 400239 D 335992 CDS YP_265836.1 71083117 3517741 complement(401348..402049) 1 NC_007205.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 402049 plsC 3517741 plsC Candidatus Pelagibacter ubique HTCC1062 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_265836.1 401348 R 335992 CDS YP_265837.1 71083118 3517742 complement(402062..403276) 1 NC_007205.1 diaminopimelate decarboxylase 403276 lysA 3517742 lysA Candidatus Pelagibacter ubique HTCC1062 diaminopimelate decarboxylase YP_265837.1 402062 R 335992 CDS YP_265838.1 71083119 3517743 complement(403276..403392) 1 NC_007205.1 hypothetical protein 403392 3517743 SAR11_0414 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265838.1 403276 R 335992 CDS YP_265839.1 71083120 3517744 complement(403394..404782) 1 NC_007205.1 argininosuccinate lyase 404782 argH 3517744 argH Candidatus Pelagibacter ubique HTCC1062 argininosuccinate lyase YP_265839.1 403394 R 335992 CDS YP_265840.1 71083121 3517745 404807..405322 1 NC_007205.1 thiol:disulfide interchange protein 405322 tlpA 3517745 tlpA Candidatus Pelagibacter ubique HTCC1062 thiol:disulfide interchange protein YP_265840.1 404807 D 335992 CDS YP_265841.1 71083122 3517746 405365..405535 1 NC_007205.1 hypothetical protein 405535 3517746 SAR11_1725 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265841.1 405365 D 335992 CDS YP_265842.1 71083123 3517747 405618..406229 1 NC_007205.1 serine esterase 406229 3517747 SAR11_0417 Candidatus Pelagibacter ubique HTCC1062 serine esterase YP_265842.1 405618 D 335992 CDS YP_265843.1 71083124 3517748 406281..406847 1 NC_007205.1 5-methylcytosine-specific restriction enzyme A 406847 mcrA 3517748 mcrA Candidatus Pelagibacter ubique HTCC1062 5-methylcytosine-specific restriction enzyme A YP_265843.1 406281 D 335992 CDS YP_265844.1 71083125 3517749 complement(406848..407381) 1 NC_007205.1 Coq7 family protein 407381 coq7 3517749 coq7 Candidatus Pelagibacter ubique HTCC1062 Coq7 family protein YP_265844.1 406848 R 335992 CDS YP_265845.1 71083126 3517750 complement(407365..407865) 1 NC_007205.1 DsbB; disulfide bond formation protein 407865 dsbB 3517750 dsbB Candidatus Pelagibacter ubique HTCC1062 disulfide bond formation protein YP_265845.1 407365 R 335992 CDS YP_265846.1 71083127 3517751 complement(407852..408448) 1 NC_007205.1 DedA; DedA family protein 408448 dedA 3517751 dedA Candidatus Pelagibacter ubique HTCC1062 DedA family protein YP_265846.1 407852 R 335992 CDS YP_265847.1 71083128 3517753 408798..410315 1 NC_007205.1 long-chain fatty acid CoA ligase (AMP-binding) 410315 faa1 3517753 faa1 Candidatus Pelagibacter ubique HTCC1062 long-chain fatty acid CoA ligase (AMP-binding) YP_265847.1 408798 D 335992 CDS YP_265848.1 71083129 3517754 complement(410672..411571) 1 NC_007205.1 similar to Myxococcus xanthus CarD; similar to COG1329: Transcriptional regulators; hypothetical protein 411571 carD 3517754 carD Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265848.1 410672 R 335992 CDS YP_265849.1 71083130 3517755 complement(411528..411854) 1 NC_007205.1 ferredoxin 411854 fdxA 3517755 fdxA Candidatus Pelagibacter ubique HTCC1062 ferredoxin YP_265849.1 411528 R 335992 CDS YP_265850.1 71083131 3517756 complement(411851..412276) 1 NC_007205.1 hypothetical protein 412276 3517756 SAR11_0425 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265850.1 411851 R 335992 CDS YP_265851.1 71083132 3517757 complement(412276..414756) 1 NC_007205.1 ATP-dependent helicase 414756 suv3 3517757 suv3 Candidatus Pelagibacter ubique HTCC1062 ATP-dependent helicase YP_265851.1 412276 R 335992 CDS YP_265852.1 71083133 3517758 complement(414886..415407) 1 NC_007205.1 thioesterase 415407 3517758 SAR11_0427 Candidatus Pelagibacter ubique HTCC1062 thioesterase YP_265852.1 414886 R 335992 CDS YP_265853.1 71083134 3517262 415586..416773 1 NC_007205.1 Acetyl-CoA acetyltransferase 416773 thlA 3517262 thlA Candidatus Pelagibacter ubique HTCC1062 Acetyl-CoA acetyltransferase YP_265853.1 415586 D 335992 CDS YP_265854.1 71083135 3517263 416904..419942 1 NC_007205.1 pyruvate dehydrogenase (lipoamide) e1 component 419942 aceE 3517263 aceE Candidatus Pelagibacter ubique HTCC1062 pyruvate dehydrogenase (lipoamide) e1 component YP_265854.1 416904 D 335992 CDS YP_265855.1 71083136 3517264 419944..421215 1 NC_007205.1 dihydrolipoamide S-acetyltransferase 421215 aceF 3517264 aceF Candidatus Pelagibacter ubique HTCC1062 dihydrolipoamide S-acetyltransferase YP_265855.1 419944 D 335992 CDS YP_265856.1 71083137 3517265 421222..422109 1 NC_007205.1 Drug/Metabolite Exporter family; transporter 422109 ydeD 3517265 ydeD Candidatus Pelagibacter ubique HTCC1062 transporter YP_265856.1 421222 D 335992 CDS YP_265857.1 71083138 3517266 complement(422106..422876) 1 NC_007205.1 bacitracin resistance undecaprenol kinase 422876 bacA 3517266 bacA Candidatus Pelagibacter ubique HTCC1062 bacitracin resistance undecaprenol kinase YP_265857.1 422106 R 335992 CDS YP_265858.1 71083139 3517267 423061..424500 1 NC_007205.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 424500 gltD 3517267 gltD Candidatus Pelagibacter ubique HTCC1062 oxidoreductase YP_265858.1 423061 D 335992 CDS YP_265859.1 71083140 3517268 424500..429005 1 NC_007205.1 glutamate synthase large subunit 429005 gltB 3517268 gltB Candidatus Pelagibacter ubique HTCC1062 glutamate synthase large subunit YP_265859.1 424500 D 335992 CDS YP_265860.1 71083141 3517269 429007..429882 1 NC_007205.1 nucleoside-diphosphate-sugar epimerase 429882 3517269 SAR11_0435 Candidatus Pelagibacter ubique HTCC1062 nucleoside-diphosphate-sugar epimerase YP_265860.1 429007 D 335992 CDS YP_265861.1 71083142 3517270 complement(429853..430506) 1 NC_007205.1 alpha/beta hydrolase 430506 3517270 SAR11_0436 Candidatus Pelagibacter ubique HTCC1062 alpha/beta hydrolase YP_265861.1 429853 R 335992 CDS YP_265862.1 71083143 3517271 430651..431805 1 NC_007205.1 group 1 family protein; glycosyl transferase family protein 431805 capM 3517271 capM Candidatus Pelagibacter ubique HTCC1062 glycosyl transferase family protein YP_265862.1 430651 D 335992 CDS YP_265863.1 71083144 3517272 431806..433722 1 NC_007205.1 threonyl-tRNA synthetase 433722 thrS 3517272 thrS Candidatus Pelagibacter ubique HTCC1062 threonyl-tRNA synthetase YP_265863.1 431806 D 335992 CDS YP_265864.1 71083145 3517273 433723..434268 1 NC_007205.1 translation initiation factor IF-3 434268 infC 3517273 infC Candidatus Pelagibacter ubique HTCC1062 translation initiation factor IF-3 YP_265864.1 433723 D 335992 CDS YP_265865.1 71083146 3517274 434322..434528 1 NC_007205.1 50S ribosomal protein L35 434528 rpmI 3517274 rpmI Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L35 YP_265865.1 434322 D 335992 CDS YP_265866.1 71083147 3517275 434530..434886 1 NC_007205.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 434886 rplT 3517275 rplT Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L20 YP_265866.1 434530 D 335992 CDS YP_265867.1 71083148 3517276 434930..435997 1 NC_007205.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 435997 pheS 3517276 pheS Candidatus Pelagibacter ubique HTCC1062 phenylalanyl-tRNA synthetase subunit alpha YP_265867.1 434930 D 335992 CDS YP_265868.1 71083149 3517277 435994..438402 1 NC_007205.1 phenylalanine-tRNA ligase 438402 pheT 3517277 pheT Candidatus Pelagibacter ubique HTCC1062 phenylalanine-tRNA ligase YP_265868.1 435994 D 335992 CDS YP_265869.1 71083150 3517278 438405..440213 1 NC_007205.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 440213 lepA 3517278 lepA Candidatus Pelagibacter ubique HTCC1062 GTP-binding protein LepA YP_265869.1 438405 D 335992 CDS YP_265870.1 71083151 3517280 complement(440311..441081) 1 NC_007205.1 methyltransferase FkbM 441081 3517280 SAR11_0445 Candidatus Pelagibacter ubique HTCC1062 methyltransferase FkbM YP_265870.1 440311 R 335992 CDS YP_265871.1 71083152 3517281 441234..443291 1 NC_007205.1 DNA topoisomerase subunit B 443291 gyrB 3517281 gyrB Candidatus Pelagibacter ubique HTCC1062 DNA topoisomerase subunit B YP_265871.1 441234 D 335992 CDS YP_265872.1 71083153 3517282 443294..444574 1 NC_007205.1 sensor histidine kinase 444574 regB 3517282 regB Candidatus Pelagibacter ubique HTCC1062 sensor histidine kinase YP_265872.1 443294 D 335992 CDS YP_265873.1 71083154 3517283 complement(444571..446379) 1 NC_007205.1 cobalamin biosynthesis protein CobT 446379 cobT 3517283 cobT Candidatus Pelagibacter ubique HTCC1062 cobalamin biosynthesis protein CobT YP_265873.1 444571 R 335992 CDS YP_265874.1 71083155 3517284 complement(446380..447354) 1 NC_007205.1 cobalamin biosynthesis protein CobS 447354 cobS 3517284 cobS Candidatus Pelagibacter ubique HTCC1062 cobalamin biosynthesis protein CobS YP_265874.1 446380 R 335992 CDS YP_265875.1 71083156 3517285 complement(447344..447871) 1 NC_007205.1 dnaJ-related; molecular chaperone 447871 3517285 SAR11_0450 Candidatus Pelagibacter ubique HTCC1062 molecular chaperone YP_265875.1 447344 R 335992 CDS YP_265876.1 71083157 3517286 447870..448157 1 NC_007205.1 BolA-like protein 448157 3517286 SAR11_0451 Candidatus Pelagibacter ubique HTCC1062 BolA-like protein YP_265876.1 447870 D 335992 CDS YP_265877.1 71083158 3517287 complement(448146..449252) 1 NC_007205.1 3-dehydroquinate synthase 449252 aroB 3517287 aroB Candidatus Pelagibacter ubique HTCC1062 3-dehydroquinate synthase YP_265877.1 448146 R 335992 CDS YP_265878.1 71083159 3517288 complement(449239..449751) 1 NC_007205.1 shikimate kinase 449751 aroK 3517288 aroK Candidatus Pelagibacter ubique HTCC1062 shikimate kinase YP_265878.1 449239 R 335992 CDS YP_265879.1 71083160 3517289 449810..449986 1 NC_007205.1 hypothetical protein 449986 3517289 SAR11_0454 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265879.1 449810 D 335992 CDS YP_265880.1 71083161 3517290 450066..451721 1 NC_007205.1 hypothetical protein 451721 3517290 SAR11_0455 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265880.1 450066 D 335992 CDS YP_265881.1 71083162 3517291 451748..452266 1 NC_007205.1 peptide deformylase 452266 def 3517291 def Candidatus Pelagibacter ubique HTCC1062 peptide deformylase YP_265881.1 451748 D 335992 CDS YP_265882.1 71083163 3517292 452267..453199 1 NC_007205.1 methionyl-tRNA formyltransferase 453199 fmt 3517292 fmt Candidatus Pelagibacter ubique HTCC1062 methionyl-tRNA formyltransferase YP_265882.1 452267 D 335992 CDS YP_265883.1 71083164 3517293 453192..453932 1 NC_007205.1 tRNA pseudouridine synthase A 453932 truA 3517293 truA Candidatus Pelagibacter ubique HTCC1062 tRNA pseudouridine synthase A YP_265883.1 453192 D 335992 CDS YP_265884.1 71083165 3517294 complement(453922..454401) 1 NC_007205.1 nuclear protein SET 454401 set1 3517294 set1 Candidatus Pelagibacter ubique HTCC1062 nuclear protein SET YP_265884.1 453922 R 335992 CDS YP_265885.1 71083166 3517295 complement(454433..455362) 1 NC_007205.1 histone deacetylase family protein 455362 acuC 3517295 acuC Candidatus Pelagibacter ubique HTCC1062 histone deacetylase family protein YP_265885.1 454433 R 335992 CDS YP_265886.1 71083167 3517296 complement(455363..455557) 1 NC_007205.1 hypothetical protein 455557 3517296 SAR11_0461 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265886.1 455363 R 335992 CDS YP_265887.1 71083168 3517297 complement(455557..456711) 1 NC_007205.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 456711 dapE 3517297 dapE Candidatus Pelagibacter ubique HTCC1062 succinyl-diaminopimelate desuccinylase YP_265887.1 455557 R 335992 CDS YP_265888.1 71083169 3517298 complement(456712..457539) 1 NC_007205.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 457539 dapD 3517298 dapD Candidatus Pelagibacter ubique HTCC1062 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_265888.1 456712 R 335992 CDS YP_265889.1 71083170 3517226 complement(457569..458240) 1 NC_007205.1 subfamily IA, variant 3; HAD-superfamily hydrolase 458240 3517226 SAR11_0464 Candidatus Pelagibacter ubique HTCC1062 HAD-superfamily hydrolase YP_265889.1 457569 R 335992 CDS YP_265890.1 71083171 3517227 complement(458237..459103) 1 NC_007205.1 acetylglutamate kinase 459103 argB 3517227 argB Candidatus Pelagibacter ubique HTCC1062 acetylglutamate kinase YP_265890.1 458237 R 335992 CDS YP_265891.1 71083172 3517228 complement(459104..460780) 1 NC_007205.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 460780 yidC 3517228 yidC Candidatus Pelagibacter ubique HTCC1062 inner membrane protein translocase component YidC YP_265891.1 459104 R 335992 CDS YP_265892.1 71083173 3517229 complement(460780..461031) 1 NC_007205.1 hypothetical protein 461031 3517229 SAR11_0467 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265892.1 460780 R 335992 CDS YP_265893.1 71083174 3517230 complement(461031..461375) 1 NC_007205.1 ribonuclease P protein 461375 3517230 SAR11_0468 Candidatus Pelagibacter ubique HTCC1062 ribonuclease P protein YP_265893.1 461031 R 335992 CDS YP_003858679.1 304570564 9714972 complement(461386..461550) 1 NC_007205.1 hypothetical protein 461550 9714972 SAR11_1500 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_003858679.1 461386 R 335992 CDS YP_265894.1 71083175 3517231 461643..462362 1 NC_007205.1 DedA family protein 462362 3517231 SAR11_0469 Candidatus Pelagibacter ubique HTCC1062 DedA family protein YP_265894.1 461643 D 335992 CDS YP_265895.1 71083176 3517233 462540..462737 1 NC_007205.1 hypothetical protein 462737 3517233 SAR11_0470 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265895.1 462540 D 335992 CDS YP_265896.1 71083177 3517234 462737..462838 1 NC_007205.1 hypothetical protein 462838 3517234 SAR11_0471 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265896.1 462737 D 335992 CDS YP_265897.1 71083178 3517235 462838..463395 1 NC_007205.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 463395 dcd 3517235 dcd Candidatus Pelagibacter ubique HTCC1062 deoxycytidine triphosphate deaminase YP_265897.1 462838 D 335992 CDS YP_265898.1 71083179 3517236 463398..464651 1 NC_007205.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase 464651 murA 3517236 murA Candidatus Pelagibacter ubique HTCC1062 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_265898.1 463398 D 335992 CDS YP_265899.1 71083180 3517237 464651..465046 1 NC_007205.1 hypothetical protein 465046 3517237 SAR11_0474 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265899.1 464651 D 335992 CDS YP_265900.1 71083181 3517238 465046..466332 1 NC_007205.1 histidinol dehydrogenase 466332 hisD 3517238 hisD Candidatus Pelagibacter ubique HTCC1062 histidinol dehydrogenase YP_265900.1 465046 D 335992 CDS YP_265901.1 71083182 3517239 466335..466550 1 NC_007205.1 translation initiation factor IF-1 466550 infA 3517239 infA Candidatus Pelagibacter ubique HTCC1062 translation initiation factor IF-1 YP_265901.1 466335 D 335992 CDS YP_265902.1 71083183 3517241 466720..466932 1 NC_007205.1 cold shock protein 466932 cspE 3517241 cspE Candidatus Pelagibacter ubique HTCC1062 cold shock protein YP_265902.1 466720 D 335992 CDS YP_265903.1 71083184 3517207 467248..468645 1 NC_007205.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 468645 hisS 3517207 hisS Candidatus Pelagibacter ubique HTCC1062 histidyl-tRNA synthetase YP_265903.1 467248 D 335992 CDS YP_265904.1 71083185 3517208 468623..469675 1 NC_007205.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase 469675 hisZ 3517208 hisZ Candidatus Pelagibacter ubique HTCC1062 ATP phosphoribosyltransferase YP_265904.1 468623 D 335992 CDS YP_265905.1 71083186 3517209 469675..470364 1 NC_007205.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase 470364 hisG 3517209 hisG Candidatus Pelagibacter ubique HTCC1062 ATP phosphoribosyltransferase YP_265905.1 469675 D 335992 CDS YP_265906.1 71083187 3517210 470546..471643 1 NC_007205.1 DNA recombination protein 471643 rmuC 3517210 rmuC Candidatus Pelagibacter ubique HTCC1062 DNA recombination protein YP_265906.1 470546 D 335992 CDS YP_265907.1 71083188 3517211 471726..472370 1 NC_007205.1 possible atypical protein kinase; hypothetical protein 472370 3517211 SAR11_0482 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265907.1 471726 D 335992 CDS YP_265908.1 71083189 3517212 472372..473799 1 NC_007205.1 exodeoxyribonuclease I 473799 sbcB 3517212 sbcB Candidatus Pelagibacter ubique HTCC1062 exodeoxyribonuclease I YP_265908.1 472372 D 335992 CDS YP_265909.1 71083190 3517213 473875..474192 1 NC_007205.1 thioredoxin 474192 trxA 3517213 trxA Candidatus Pelagibacter ubique HTCC1062 thioredoxin YP_265909.1 473875 D 335992 CDS YP_265910.1 71083191 3517214 complement(474189..475457) 1 NC_007205.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase FolC 475457 folC 3517214 folC Candidatus Pelagibacter ubique HTCC1062 bifunctional folylpolyglutamate synthase/dihydrofolate synthase FolC YP_265910.1 474189 R 335992 CDS YP_265911.1 71083192 3517215 complement(475411..476340) 1 NC_007205.1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 476340 accD 3517215 accD Candidatus Pelagibacter ubique HTCC1062 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta YP_265911.1 475411 R 335992 CDS YP_265912.1 71083193 3517216 complement(476337..477134) 1 NC_007205.1 tryptophan synthase subunit alpha 477134 trpA 3517216 trpA Candidatus Pelagibacter ubique HTCC1062 tryptophan synthase subunit alpha YP_265912.1 476337 R 335992 CDS YP_265913.1 71083194 3517217 complement(477136..478368) 1 NC_007205.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 478368 trpB 3517217 trpB Candidatus Pelagibacter ubique HTCC1062 tryptophan synthase subunit beta YP_265913.1 477136 R 335992 CDS YP_265914.1 71083195 3517218 complement(478358..478987) 1 NC_007205.1 N-(5'-phosphoribosyl)anthranilate isomerase 478987 trpF 3517218 trpF Candidatus Pelagibacter ubique HTCC1062 N-(5'-phosphoribosyl)anthranilate isomerase YP_265914.1 478358 R 335992 CDS YP_265915.1 71083196 3517219 complement(478984..479676) 1 NC_007205.1 orotidine 5'-phosphate decarboxylase 479676 pyrF 3517219 pyrF Candidatus Pelagibacter ubique HTCC1062 orotidine 5'-phosphate decarboxylase YP_265915.1 478984 R 335992 CDS YP_265916.1 71083197 3517220 complement(479666..479956) 1 NC_007205.1 integration host factor beta-subunit (IHF-beta) 479956 himD 3517220 himD Candidatus Pelagibacter ubique HTCC1062 integration host factor beta-subunit (IHF-beta) YP_265916.1 479666 R 335992 CDS YP_265917.1 71083198 3517221 complement(479960..481690) 1 NC_007205.1 30S ribosomal protein S1 481690 rpsA 3517221 rpsA Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S1 YP_265917.1 479960 R 335992 CDS YP_265918.1 71083199 3517222 complement(481690..482343) 1 NC_007205.1 cytidylate kinase 482343 cmk 3517222 cmk Candidatus Pelagibacter ubique HTCC1062 cytidylate kinase YP_265918.1 481690 R 335992 CDS YP_265919.2 304570548 3517223 complement(482340..483668) 1 NC_007205.1 3-phosphoshikimate 1-carboxyvinyltransferase 483668 aroA 3517223 aroA Candidatus Pelagibacter ubique HTCC1062 3-phosphoshikimate 1-carboxyvinyltransferase YP_265919.2 482340 R 335992 CDS YP_265920.1 71083201 3517224 complement(483672..484448) 1 NC_007205.1 YhbG; sulfate/thiosulfate import ATP-binding protein cysA 484448 yhbG 3517224 yhbG Candidatus Pelagibacter ubique HTCC1062 sulfate/thiosulfate import ATP-binding protein cysA YP_265920.1 483672 R 335992 CDS YP_265921.1 71083202 3517225 complement(484450..485034) 1 NC_007205.1 hypothetical protein 485034 3517225 SAR11_0496 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265921.1 484450 R 335992 CDS YP_265922.1 71083203 3517187 complement(485035..486006) 1 NC_007205.1 arabinose 5-phosphate isomerase 486006 gutQ 3517187 gutQ Candidatus Pelagibacter ubique HTCC1062 arabinose 5-phosphate isomerase YP_265922.1 485035 R 335992 CDS YP_265923.1 71083204 3517188 complement(486007..486618) 1 NC_007205.1 ribonuclease D 486618 rnd 3517188 rnd Candidatus Pelagibacter ubique HTCC1062 ribonuclease D YP_265923.1 486007 R 335992 CDS YP_265924.1 71083205 3517189 486635..487603 1 NC_007205.1 NADH-ubiquinone oxireductase 487603 3517189 SAR11_0499 Candidatus Pelagibacter ubique HTCC1062 NADH-ubiquinone oxireductase YP_265924.1 486635 D 335992 CDS YP_265925.1 71083206 3517190 complement(487775..488275) 1 NC_007205.1 hypothetical protein 488275 3517190 SAR11_0500 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265925.1 487775 R 335992 CDS YP_265926.1 71083207 3517191 488408..489211 1 NC_007205.1 YadH-like ABC-2-type transport protein 489211 3517191 SAR11_0501 Candidatus Pelagibacter ubique HTCC1062 YadH-like ABC-2-type transport protein YP_265926.1 488408 D 335992 CDS YP_265927.1 71083208 3517192 489215..490381 1 NC_007205.1 acetylornithine aminotransferase 490381 argD 3517192 argD Candidatus Pelagibacter ubique HTCC1062 acetylornithine aminotransferase YP_265927.1 489215 D 335992 CDS YP_265928.1 71083209 3517193 490384..491313 1 NC_007205.1 ornithine carbamoyltransferase 491313 argF 3517193 argF Candidatus Pelagibacter ubique HTCC1062 ornithine carbamoyltransferase YP_265928.1 490384 D 335992 CDS YP_265929.1 71083210 3517194 complement(491305..491844) 1 NC_007205.1 cytochrome C 491844 cycM 3517194 cycM Candidatus Pelagibacter ubique HTCC1062 cytochrome C YP_265929.1 491305 R 335992 CDS YP_265930.1 71083211 3517195 491948..492688 1 NC_007205.1 3-deoxy-manno-octulosonate cytidylyltransferase 492688 kdsB 3517195 kdsB Candidatus Pelagibacter ubique HTCC1062 3-deoxy-manno-octulosonate cytidylyltransferase YP_265930.1 491948 D 335992 CDS YP_265931.1 71083212 3517196 492690..493520 1 NC_007205.1 prephenate dehydratase 493520 pheA 3517196 pheA Candidatus Pelagibacter ubique HTCC1062 prephenate dehydratase YP_265931.1 492690 D 335992 CDS YP_265932.1 71083213 3517197 493665..495338 1 NC_007205.1 DNA-directed DNA polymerase subunit gamma/tau 495338 dnaX 3517197 dnaX Candidatus Pelagibacter ubique HTCC1062 DNA-directed DNA polymerase subunit gamma/tau YP_265932.1 493665 D 335992 CDS YP_265933.1 71083214 3517198 495342..495659 1 NC_007205.1 YbaB family COG0; hypothetical protein 495659 ybaB 3517198 ybaB Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265933.1 495342 D 335992 CDS YP_265934.1 71083215 3517199 495664..496275 1 NC_007205.1 recR-like protein 496275 recR 3517199 recR Candidatus Pelagibacter ubique HTCC1062 recR-like protein YP_265934.1 495664 D 335992 CDS YP_265935.1 71083216 3517200 complement(496262..498457) 1 NC_007205.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 498457 glcB 3517200 glcB Candidatus Pelagibacter ubique HTCC1062 malate synthase G YP_265935.1 496262 R 335992 CDS YP_265936.1 71083217 3517201 498707..499813 1 NC_007205.1 similar to carboxyltransferase alpha chain - Aquifex aeolicus; acetyl-CoA carboxylase 499813 accA 3517201 accA Candidatus Pelagibacter ubique HTCC1062 acetyl-CoA carboxylase YP_265936.1 498707 D 335992 CDS YP_265937.1 71083218 3517202 complement(499808..502372) 1 NC_007205.1 preprotein translocase subunit SecA 502372 secA 3517202 secA Candidatus Pelagibacter ubique HTCC1062 preprotein translocase subunit SecA YP_265937.1 499808 R 335992 CDS YP_265938.2 304570549 3517203 502438..503739 1 NC_007205.1 ArgJ family protein 503739 argJ 3517203 argJ Candidatus Pelagibacter ubique HTCC1062 ArgJ family protein YP_265938.2 502438 D 335992 CDS YP_265939.1 71083220 3517204 503781..504212 1 NC_007205.1 similar to protein of unknown function (DUF1178); hypothetical protein 504212 3517204 SAR11_0514 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265939.1 503781 D 335992 CDS YP_265940.1 71083221 3517205 complement(504209..504931) 1 NC_007205.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 504931 ubiG 3517205 ubiG Candidatus Pelagibacter ubique HTCC1062 3-demethylubiquinone-9 3-methyltransferase YP_265940.1 504209 R 335992 CDS YP_265941.1 71083222 3517206 504997..506208 1 NC_007205.1 aspartate kinase 506208 lysC 3517206 lysC Candidatus Pelagibacter ubique HTCC1062 aspartate kinase YP_265941.1 504997 D 335992 CDS YP_265942.1 71083223 3517172 506212..507312 1 NC_007205.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 507312 ispG 3517172 ispG Candidatus Pelagibacter ubique HTCC1062 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_265942.1 506212 D 335992 CDS YP_265943.1 71083224 3517173 507318..508391 1 NC_007205.1 protein release factor class I 508391 prfA 3517173 prfA Candidatus Pelagibacter ubique HTCC1062 protein release factor class I YP_265943.1 507318 D 335992 CDS YP_265944.1 71083225 3517174 508393..509235 1 NC_007205.1 hypothetical protein 509235 hemK 3517174 hemK Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265944.1 508393 D 335992 CDS YP_265945.1 71083226 3517175 509250..509726 1 NC_007205.1 similar to hypothetical protein EBAC000-62A03.2; hypothetical protein 509726 3517175 SAR11_0520 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265945.1 509250 D 335992 CDS YP_265946.1 71083227 3517176 complement(509729..511027) 1 NC_007205.1 M23/M37 peptidase 511027 yebA 3517176 yebA Candidatus Pelagibacter ubique HTCC1062 M23/M37 peptidase YP_265946.1 509729 R 335992 CDS YP_265947.1 71083228 3517181 516442..516975 1 NC_007205.1 protein function by Fugue structure prediction; glucose-6-phosphate isomerase 516975 3517181 SAR11_0523 Candidatus Pelagibacter ubique HTCC1062 glucose-6-phosphate isomerase YP_265947.1 516442 D 335992 CDS YP_265948.1 71083229 3517182 516956..517402 1 NC_007205.1 hypothetical protein 517402 3517182 SAR11_0524 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265948.1 516956 D 335992 CDS YP_265949.1 71083230 3517183 517419..518273 1 NC_007205.1 NAD-dependent epimerase/dehydratase 518273 3517183 SAR11_0525 Candidatus Pelagibacter ubique HTCC1062 NAD-dependent epimerase/dehydratase YP_265949.1 517419 D 335992 CDS YP_265950.1 71083231 3517184 complement(518270..519133) 1 NC_007205.1 NAD-dependent epimerase/dehydratase 519133 3517184 SAR11_0526 Candidatus Pelagibacter ubique HTCC1062 NAD-dependent epimerase/dehydratase YP_265950.1 518270 R 335992 CDS YP_265951.1 71083232 3517185 complement(519133..520869) 1 NC_007205.1 acetolactate synthase II large chain 520869 3517185 SAR11_0527 Candidatus Pelagibacter ubique HTCC1062 acetolactate synthase II large chain YP_265951.1 519133 R 335992 CDS YP_265952.1 71083233 3517186 520922..521581 1 NC_007205.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase 521581 smtA 3517186 smtA Candidatus Pelagibacter ubique HTCC1062 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_265952.1 520922 D 335992 CDS YP_265953.1 71083234 3517152 521587..522627 1 NC_007205.1 zinc-containing alcohol dehydrogenase 522627 3517152 SAR11_0529 Candidatus Pelagibacter ubique HTCC1062 zinc-containing alcohol dehydrogenase YP_265953.1 521587 D 335992 CDS YP_265954.1 71083235 3517153 522650..523831 1 NC_007205.1 cyclopropane-fatty-acyl-phospholipid synthase 523831 3517153 SAR11_0530 Candidatus Pelagibacter ubique HTCC1062 cyclopropane-fatty-acyl-phospholipid synthase YP_265954.1 522650 D 335992 CDS YP_265955.1 71083236 3517154 523831..524610 1 NC_007205.1 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-ACP reductase 524610 3517154 SAR11_0531 Candidatus Pelagibacter ubique HTCC1062 3-ketoacyl-ACP reductase YP_265955.1 523831 D 335992 CDS YP_265956.1 71083237 3517155 complement(524613..525977) 1 NC_007205.1 FAD oxidase family protein 525977 3517155 SAR11_0532 Candidatus Pelagibacter ubique HTCC1062 FAD oxidase family protein YP_265956.1 524613 R 335992 CDS YP_265957.1 71083238 3517156 complement(526036..526809) 1 NC_007205.1 methyltransferase 526809 3517156 SAR11_0533 Candidatus Pelagibacter ubique HTCC1062 methyltransferase YP_265957.1 526036 R 335992 CDS YP_265958.1 71083239 3517157 526790..528139 1 NC_007205.1 aminotransferase 528139 3517157 SAR11_0534 Candidatus Pelagibacter ubique HTCC1062 aminotransferase YP_265958.1 526790 D 335992 CDS YP_265959.1 71083240 3517158 complement(528210..529664) 1 NC_007205.1 deoxynucleotidase 529664 3517158 SAR11_0535 Candidatus Pelagibacter ubique HTCC1062 deoxynucleotidase YP_265959.1 528210 R 335992 CDS YP_265960.1 71083241 3517159 complement(529658..530587) 1 NC_007205.1 transketolase 530587 tktC 3517159 tktC Candidatus Pelagibacter ubique HTCC1062 transketolase YP_265960.1 529658 R 335992 CDS YP_265961.1 71083242 3517160 complement(530587..531378) 1 NC_007205.1 transketolase 531378 tktN 3517160 tktN Candidatus Pelagibacter ubique HTCC1062 transketolase YP_265961.1 530587 R 335992 CDS YP_265962.1 71083243 3517161 531418..532356 1 NC_007205.1 GalE-like protein; UDP-glucose 4 epimerase 532356 3517161 SAR11_0538 Candidatus Pelagibacter ubique HTCC1062 UDP-glucose 4 epimerase YP_265962.1 531418 D 335992 CDS YP_265963.1 71083244 3517162 532349..533857 1 NC_007205.1 cytidylyltransferase/carbohydrate (or pyrimidine) kinase 533857 rfaE 3517162 rfaE Candidatus Pelagibacter ubique HTCC1062 cytidylyltransferase/carbohydrate (or pyrimidine) kinase YP_265963.1 532349 D 335992 CDS YP_265964.1 71083245 3517163 533858..534580 1 NC_007205.1 spsA-like glycosyl transferase 534580 spsA 3517163 spsA Candidatus Pelagibacter ubique HTCC1062 spsA-like glycosyl transferase YP_265964.1 533858 D 335992 CDS YP_265965.1 71083246 3517164 534588..535577 1 NC_007205.1 dtdpglucose 4,6-dehydratase 535577 rfbB 3517164 rfbB Candidatus Pelagibacter ubique HTCC1062 dtdpglucose 4,6-dehydratase YP_265965.1 534588 D 335992 CDS YP_265966.1 71083247 3517165 complement(535581..537269) 1 NC_007205.1 hypothetical protein 537269 3517165 SAR11_0542 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265966.1 535581 R 335992 CDS YP_265967.1 71083248 3517166 537246..537701 1 NC_007205.1 hypothetical protein 537701 3517166 SAR11_0543 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265967.1 537246 D 335992 CDS YP_265968.1 71083249 3517167 537702..538163 1 NC_007205.1 hypothetical protein 538163 3517167 SAR11_0544 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265968.1 537702 D 335992 CDS YP_265969.1 71083250 3517168 538166..538732 1 NC_007205.1 phosphoheptose isomerase 538732 gmhA 3517168 gmhA Candidatus Pelagibacter ubique HTCC1062 phosphoheptose isomerase YP_265969.1 538166 D 335992 CDS YP_265970.1 71083251 3517169 complement(538725..539216) 1 NC_007205.1 D-glycero-D-manno-heptose 1,7 bisphophate phosphatase 539216 gmhB 3517169 gmhB Candidatus Pelagibacter ubique HTCC1062 D-glycero-D-manno-heptose 1,7 bisphophate phosphatase YP_265970.1 538725 R 335992 CDS YP_265971.1 71083252 3517170 complement(539250..540239) 1 NC_007205.1 D amino acid oxidase (DAO) family protein 540239 3517170 SAR11_0547 Candidatus Pelagibacter ubique HTCC1062 D amino acid oxidase (DAO) family protein YP_265971.1 539250 R 335992 CDS YP_265972.1 71083253 3517171 complement(540307..541656) 1 NC_007205.1 hypothetical protein 541656 3517171 SAR11_0548 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265972.1 540307 R 335992 CDS YP_265973.1 71083254 3517133 complement(541643..542854) 1 NC_007205.1 hypothetical protein 542854 3517133 SAR11_0549 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265973.1 541643 R 335992 CDS YP_265974.1 71083255 3517134 complement(543013..544125) 1 NC_007205.1 glycosyl transferase family protein 544125 rfaG 3517134 rfaG Candidatus Pelagibacter ubique HTCC1062 glycosyl transferase family protein YP_265974.1 543013 R 335992 CDS YP_265975.1 71083256 3517135 complement(544167..545240) 1 NC_007205.1 glycosyl transferase family protein 545240 3517135 SAR11_0551 Candidatus Pelagibacter ubique HTCC1062 glycosyl transferase family protein YP_265975.1 544167 R 335992 CDS YP_265976.1 71083257 3517136 545259..546092 1 NC_007205.1 spsA-like protein 546092 lgtF 3517136 lgtF Candidatus Pelagibacter ubique HTCC1062 spsA-like protein YP_265976.1 545259 D 335992 CDS YP_265977.1 71083258 3517137 546079..547206 1 NC_007205.1 DegT/DnrJ/EryC1/StrS aminotransferase 547206 3517137 SAR11_0553 Candidatus Pelagibacter ubique HTCC1062 DegT/DnrJ/EryC1/StrS aminotransferase YP_265977.1 546079 D 335992 CDS YP_265978.1 71083259 3517138 547210..548943 1 NC_007205.1 carbamoyltransferase 548943 3517138 SAR11_0554 Candidatus Pelagibacter ubique HTCC1062 carbamoyltransferase YP_265978.1 547210 D 335992 CDS YP_265979.1 71083260 3517139 548924..549535 1 NC_007205.1 CMAS family protein 549535 3517139 SAR11_0555 Candidatus Pelagibacter ubique HTCC1062 CMAS family protein YP_265979.1 548924 D 335992 CDS YP_265980.1 71083261 3517140 complement(549536..550669) 1 NC_007205.1 glycosyl transferase family protein 550669 3517140 SAR11_0556 Candidatus Pelagibacter ubique HTCC1062 glycosyl transferase family protein YP_265980.1 549536 R 335992 CDS YP_265981.1 71083262 3517141 550866..551843 1 NC_007205.1 glycosyl transferase family protein 551843 3517141 SAR11_0557 Candidatus Pelagibacter ubique HTCC1062 glycosyl transferase family protein YP_265981.1 550866 D 335992 CDS YP_265982.1 71083263 3517142 551827..552528 1 NC_007205.1 cyclopropane-fatty-acyl-phospholipid 552528 3517142 SAR11_0558 Candidatus Pelagibacter ubique HTCC1062 cyclopropane-fatty-acyl-phospholipid YP_265982.1 551827 D 335992 CDS YP_265983.1 71083264 3517143 complement(552525..553595) 1 NC_007205.1 1,2-N-acetylglucosaminetransferase 553595 rfaK 3517143 rfaK Candidatus Pelagibacter ubique HTCC1062 1,2-N-acetylglucosaminetransferase YP_265983.1 552525 R 335992 CDS YP_265984.1 71083265 3517144 553607..554311 1 NC_007205.1 PCMT - protein-L-isoaspartate(D-aspartate) O-methyltransferase 554311 3517144 SAR11_0560 Candidatus Pelagibacter ubique HTCC1062 PCMT - protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_265984.1 553607 D 335992 CDS YP_265985.1 71083266 3517145 554312..555052 1 NC_007205.1 oxidoreductase family protein 555052 3517145 SAR11_0561 Candidatus Pelagibacter ubique HTCC1062 oxidoreductase family protein YP_265985.1 554312 D 335992 CDS YP_265986.1 71083267 3517146 complement(555224..555991) 1 NC_007205.1 glycosyl transferase family protein 555991 wbyL 3517146 wbyL Candidatus Pelagibacter ubique HTCC1062 glycosyl transferase family protein YP_265986.1 555224 R 335992 CDS YP_265987.1 71083268 3517147 complement(555992..556138) 1 NC_007205.1 hypothetical protein 556138 3517147 SAR11_1726 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265987.1 555992 R 335992 CDS YP_265988.1 71083269 3517148 complement(556146..556334) 1 NC_007205.1 reductase 556334 3517148 SAR11_0564 Candidatus Pelagibacter ubique HTCC1062 reductase YP_265988.1 556146 R 335992 CDS YP_265989.1 71083270 3517149 556386..556751 1 NC_007205.1 hypothetical protein 556751 3517149 SAR11_0565 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265989.1 556386 D 335992 CDS YP_265990.1 71083271 3517150 556732..558045 1 NC_007205.1 O-antigen polymerase 558045 3517150 SAR11_0566 Candidatus Pelagibacter ubique HTCC1062 O-antigen polymerase YP_265990.1 556732 D 335992 CDS YP_265991.1 71083272 3517151 complement(558028..559029) 1 NC_007205.1 hypothetical protein 559029 3517151 SAR11_0567 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_265991.1 558028 R 335992 CDS YP_265992.2 304570550 3517115 559159..560484 1 NC_007205.1 D-amino acid oxidoreductase family protein 560484 3517115 SAR11_0568 Candidatus Pelagibacter ubique HTCC1062 D-amino acid oxidoreductase family protein YP_265992.2 559159 D 335992 CDS YP_265993.1 71083274 3517116 560488..561444 1 NC_007205.1 UDP-glucose 4-epimerase 561444 galE 3517116 galE Candidatus Pelagibacter ubique HTCC1062 UDP-glucose 4-epimerase YP_265993.1 560488 D 335992 CDS YP_265994.1 71083275 3517117 561627..562670 1 NC_007205.1 gdpmannose 4,6-dehydratase 562670 gmd 3517117 gmd Candidatus Pelagibacter ubique HTCC1062 gdpmannose 4,6-dehydratase YP_265994.1 561627 D 335992 CDS YP_265995.1 71083276 3517118 562663..563601 1 NC_007205.1 substrain RIMD 0509952; GDP-fucose synthetase chain A 563601 wcaG 3517118 wcaG Candidatus Pelagibacter ubique HTCC1062 GDP-fucose synthetase chain A YP_265995.1 562663 D 335992 CDS YP_265996.1 71083277 3517119 563601..564479 1 NC_007205.1 ADP-L-glycero-D-manno-heptose-6-epimerase 564479 rfaD 3517119 rfaD Candidatus Pelagibacter ubique HTCC1062 ADP-L-glycero-D-manno-heptose-6-epimerase YP_265996.1 563601 D 335992 CDS YP_265997.1 71083278 3517121 564660..564785 1 NC_007205.1 50S ribosomal protein L36 564785 rpmJ 3517121 rpmJ Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L36 YP_265997.1 564660 D 335992 CDS YP_265998.1 71083279 3517122 564911..565999 1 NC_007205.1 C-terminal; alanine dehydrogenase 565999 pntA 3517122 pntA Candidatus Pelagibacter ubique HTCC1062 alanine dehydrogenase YP_265998.1 564911 D 335992 CDS YP_265999.1 71083280 3517123 566004..566312 1 NC_007205.1 NAD(P) transhydrogenase subunit alpha 566312 pntAB 3517123 pntAB Candidatus Pelagibacter ubique HTCC1062 NAD(P) transhydrogenase subunit alpha YP_265999.1 566004 D 335992 CDS YP_266000.1 71083281 3517124 566315..567709 1 NC_007205.1 NAD(P) transhydrogenase subunit beta 567709 pntB 3517124 pntB Candidatus Pelagibacter ubique HTCC1062 NAD(P) transhydrogenase subunit beta YP_266000.1 566315 D 335992 CDS YP_266001.1 71083282 3517125 567715..568413 1 NC_007205.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 568413 tal 3517125 tal Candidatus Pelagibacter ubique HTCC1062 translaldolase YP_266001.1 567715 D 335992 CDS YP_266002.1 71083283 3517127 complement(568515..568709) 1 NC_007205.1 30S ribosomal protein S21 568709 rpsU 3517127 rpsU Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S21 YP_266002.1 568515 R 335992 CDS YP_266003.2 304570551 3517128 complement(568765..569352) 1 NC_007205.1 similar to protein of unknown function (DUF1013); hypothetical protein 569352 3517128 SAR11_0579 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266003.2 568765 R 335992 CDS YP_266004.1 71083285 3517129 complement(569353..569583) 1 NC_007205.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 569583 rpmE 3517129 rpmE Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L31 YP_266004.1 569353 R 335992 CDS YP_266005.1 71083286 3517130 complement(569619..570359) 1 NC_007205.1 extragenic suppressor protein suhB 570359 suhB 3517130 suhB Candidatus Pelagibacter ubique HTCC1062 extragenic suppressor protein suhB YP_266005.1 569619 R 335992 CDS YP_266006.1 71083287 3517131 complement(570365..570925) 1 NC_007205.1 elongation factor P (EF-P) 570925 efp 3517131 efp Candidatus Pelagibacter ubique HTCC1062 elongation factor P (EF-P) YP_266006.1 570365 R 335992 CDS YP_266007.1 71083288 3517132 complement(570922..571545) 1 NC_007205.1 thiamine-phosphate pyrophosphorylase 571545 thiE 3517132 thiE Candidatus Pelagibacter ubique HTCC1062 thiamine-phosphate pyrophosphorylase YP_266007.1 570922 R 335992 CDS YP_266008.1 71083289 3517096 complement(571532..572542) 1 NC_007205.1 similar to non-muscle-type fructose-bisphosphate aldolase from Pacific lamprey; fructose-bisphosphate aldolase 572542 fbaB 3517096 fbaB Candidatus Pelagibacter ubique HTCC1062 fructose-bisphosphate aldolase YP_266008.1 571532 R 335992 CDS YP_266009.1 71083290 3517097 complement(572544..573722) 1 NC_007205.1 phosphoglycerate kinase 573722 pgk 3517097 pgk Candidatus Pelagibacter ubique HTCC1062 phosphoglycerate kinase YP_266009.1 572544 R 335992 CDS YP_266010.1 71083291 3517098 complement(573722..574729) 1 NC_007205.1 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) 574729 gap 3517098 gap Candidatus Pelagibacter ubique HTCC1062 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) YP_266010.1 573722 R 335992 CDS YP_266011.1 71083292 3517099 complement(574732..576690) 1 NC_007205.1 thiamine diphosphate binding domain; transketolase 576690 tktB 3517099 tktB Candidatus Pelagibacter ubique HTCC1062 transketolase YP_266011.1 574732 R 335992 CDS YP_266012.1 71083293 3517100 576744..577067 1 NC_007205.1 5-formyltetrahydrofolate cyclo-ligase 577067 yqgN 3517100 yqgN Candidatus Pelagibacter ubique HTCC1062 5-formyltetrahydrofolate cyclo-ligase YP_266012.1 576744 D 335992 CDS YP_266013.1 71083294 3517101 577055..577501 1 NC_007205.1 similar to family of unknown function (DUF710); hypothetical protein 577501 3517101 SAR11_0589 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266013.1 577055 D 335992 CDS YP_266014.1 71083295 3517102 577506..578054 1 NC_007205.1 5-formyltetrahydrofolate cyclo-ligase 578054 3517102 SAR11_0590 Candidatus Pelagibacter ubique HTCC1062 5-formyltetrahydrofolate cyclo-ligase YP_266014.1 577506 D 335992 CDS YP_266015.1 71083296 3517103 578051..578857 1 NC_007205.1 hypothetical protein 578857 3517103 SAR11_0591 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266015.1 578051 D 335992 CDS YP_266016.1 71083297 3517104 578863..579588 1 NC_007205.1 hypothetical protein 579588 3517104 SAR11_0592 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266016.1 578863 D 335992 CDS YP_266017.1 71083298 3517105 579588..580082 1 NC_007205.1 crossover junction endodeoxyribonuclease 580082 ruvC 3517105 ruvC Candidatus Pelagibacter ubique HTCC1062 crossover junction endodeoxyribonuclease YP_266017.1 579588 D 335992 CDS YP_266018.1 71083299 3517106 580136..580810 1 NC_007205.1 substrain RIMD 0509952; inner membrane protein TolQ 580810 tolQ 3517106 tolQ Candidatus Pelagibacter ubique HTCC1062 inner membrane protein TolQ YP_266018.1 580136 D 335992 CDS YP_266019.1 71083300 3517107 580812..581228 1 NC_007205.1 tolR protein 581228 tolR 3517107 tolR Candidatus Pelagibacter ubique HTCC1062 tolR protein YP_266019.1 580812 D 335992 CDS YP_266020.1 71083301 3517108 581234..582043 1 NC_007205.1 TolA protein 582043 tolA 3517108 tolA Candidatus Pelagibacter ubique HTCC1062 TolA protein YP_266020.1 581234 D 335992 CDS YP_266021.1 71083302 3517109 582046..583386 1 NC_007205.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 583386 tolB 3517109 tolB Candidatus Pelagibacter ubique HTCC1062 translocation protein TolB YP_266021.1 582046 D 335992 CDS YP_266022.1 71083303 3517110 583474..583953 1 NC_007205.1 OmpA family protein 583953 ompA 3517110 ompA Candidatus Pelagibacter ubique HTCC1062 OmpA family protein YP_266022.1 583474 D 335992 CDS YP_266023.1 71083304 3517111 584040..585014 1 NC_007205.1 similar to COG1729: Uncharacterized protein conserved in bacteria; hypothetical protein 585014 3517111 SAR11_0599 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266023.1 584040 D 335992 CDS YP_266024.2 304570552 3517112 584989..586029 1 NC_007205.1 cell cycle protein mesj 586029 mesJ 3517112 mesJ Candidatus Pelagibacter ubique HTCC1062 cell cycle protein mesj YP_266024.2 584989 D 335992 CDS YP_266025.1 71083306 3517113 586081..587967 1 NC_007205.1 metalloprotease FtsH 587967 ftsH 3517113 ftsH Candidatus Pelagibacter ubique HTCC1062 metalloprotease FtsH YP_266025.1 586081 D 335992 CDS YP_266026.1 71083307 3517114 587974..589026 1 NC_007205.1 dihydropteroate synthase-like protein 589026 folP 3517114 folP Candidatus Pelagibacter ubique HTCC1062 dihydropteroate synthase-like protein YP_266026.1 587974 D 335992 CDS YP_266027.1 71083308 3517077 589026..590357 1 NC_007205.1 phosphoglucomutase/phosphomannomutase family protein MrsA 590357 mrsA 3517077 mrsA Candidatus Pelagibacter ubique HTCC1062 phosphoglucomutase/phosphomannomutase family protein MrsA YP_266027.1 589026 D 335992 CDS YP_266028.1 71083309 3517078 590359..591171 1 NC_007205.1 phosphomethylpyrimidine kinase 591171 thiD 3517078 thiD Candidatus Pelagibacter ubique HTCC1062 phosphomethylpyrimidine kinase YP_266028.1 590359 D 335992 CDS YP_266029.1 71083310 3517079 591171..592463 1 NC_007205.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 592463 adsS 3517079 adsS Candidatus Pelagibacter ubique HTCC1062 adenylosuccinate synthetase YP_266029.1 591171 D 335992 CDS YP_266030.1 71083311 3517080 complement(592460..593341) 1 NC_007205.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 593341 rpoH 3517080 rpoH Candidatus Pelagibacter ubique HTCC1062 RNA polymerase factor sigma-32 YP_266030.1 592460 R 335992 CDS YP_266031.1 71083312 3517081 complement(593396..594376) 1 NC_007205.1 pseudouridylate synthase 594376 sfhB 3517081 sfhB Candidatus Pelagibacter ubique HTCC1062 pseudouridylate synthase YP_266031.1 593396 R 335992 CDS YP_266032.1 71083313 3517083 complement(594493..595425) 1 NC_007205.1 Sua5/YciO/YrdC family protein 595425 3517083 SAR11_0608 Candidatus Pelagibacter ubique HTCC1062 Sua5/YciO/YrdC family protein YP_266032.1 594493 R 335992 CDS YP_266033.1 71083314 3517084 595446..595691 1 NC_007205.1 exonuclease VII small subunit 595691 3517084 SAR11_0609 Candidatus Pelagibacter ubique HTCC1062 exonuclease VII small subunit YP_266033.1 595446 D 335992 CDS YP_266034.2 304570553 3517085 595681..596553 1 NC_007205.1 substrain RIMD 0509952; geranyltranstransferase 596553 ispA 3517085 ispA Candidatus Pelagibacter ubique HTCC1062 geranyltranstransferase YP_266034.2 595681 D 335992 CDS YP_266035.1 71083316 3517086 596553..598466 1 NC_007205.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 598466 dxs 3517086 dxs Candidatus Pelagibacter ubique HTCC1062 1-deoxy-D-xylulose-5-phosphate synthase YP_266035.1 596553 D 335992 CDS YP_266036.1 71083317 3517087 complement(598475..599557) 1 NC_007205.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 599557 aroC 3517087 aroC Candidatus Pelagibacter ubique HTCC1062 chorismate synthase YP_266036.1 598475 R 335992 CDS YP_266037.1 71083318 3517088 599591..600217 1 NC_007205.1 pyridoxamine-phosphate oxidase 600217 pdxH 3517088 pdxH Candidatus Pelagibacter ubique HTCC1062 pyridoxamine-phosphate oxidase YP_266037.1 599591 D 335992 CDS YP_266038.1 71083319 3517089 complement(600214..601227) 1 NC_007205.1 octaprenyl-diphosphate synthase 601227 ispB 3517089 ispB Candidatus Pelagibacter ubique HTCC1062 octaprenyl-diphosphate synthase YP_266038.1 600214 R 335992 CDS YP_266039.1 71083320 3517090 601340..602146 1 NC_007205.1 S49 family peptidase 602146 sohB 3517090 sohB Candidatus Pelagibacter ubique HTCC1062 S49 family peptidase YP_266039.1 601340 D 335992 CDS YP_266040.1 71083321 3517091 602136..603020 1 NC_007205.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 603020 glyQ 3517091 glyQ Candidatus Pelagibacter ubique HTCC1062 glycyl-tRNA synthetase subunit alpha YP_266040.1 602136 D 335992 CDS YP_266041.1 71083322 3517092 603020..605089 1 NC_007205.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 605089 glyS 3517092 glyS Candidatus Pelagibacter ubique HTCC1062 glycyl-tRNA synthetase subunit beta YP_266041.1 603020 D 335992 CDS YP_266042.1 71083323 3517093 605086..607749 1 NC_007205.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 607749 ppdk 3517093 ppdk Candidatus Pelagibacter ubique HTCC1062 pyruvate phosphate dikinase YP_266042.1 605086 D 335992 CDS YP_266043.1 71083324 3517094 complement(607746..608579) 1 NC_007205.1 quinolinate phosphoribosyl transferase 608579 nadC 3517094 nadC Candidatus Pelagibacter ubique HTCC1062 quinolinate phosphoribosyl transferase YP_266043.1 607746 R 335992 CDS YP_266044.1 71083325 3517095 complement(608585..609574) 1 NC_007205.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 609574 nadA 3517095 nadA Candidatus Pelagibacter ubique HTCC1062 quinolinate synthetase YP_266044.1 608585 R 335992 CDS YP_266045.1 71083326 3517058 complement(609626..610513) 1 NC_007205.1 GcvT-like aminomethyltransferase protein 610513 3517058 SAR11_0621 Candidatus Pelagibacter ubique HTCC1062 GcvT-like aminomethyltransferase protein YP_266045.1 609626 R 335992 CDS YP_266046.1 71083327 3517059 610557..611861 1 NC_007205.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 611861 pyrC2 3517059 pyrC2 Candidatus Pelagibacter ubique HTCC1062 dihydroorotase YP_266046.1 610557 D 335992 CDS YP_266047.1 71083328 3517060 complement(611858..612190) 1 NC_007205.1 small multidrug resistance protein 612190 qacE 3517060 qacE Candidatus Pelagibacter ubique HTCC1062 small multidrug resistance protein YP_266047.1 611858 R 335992 CDS YP_266048.1 71083329 3517061 complement(612190..614085) 1 NC_007205.1 similar to COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; hypothetical protein 614085 prpE 3517061 prpE Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266048.1 612190 R 335992 CDS YP_266049.1 71083330 3517062 614302..615069 1 NC_007205.1 bacteriorhodopsin 615069 3517062 SAR11_0625 Candidatus Pelagibacter ubique HTCC1062 bacteriorhodopsin YP_266049.1 614302 D 335992 CDS YP_266050.1 71083331 3517063 615153..615473 1 NC_007205.1 similar to 2Fe-2S Caulobacter crescentus CB15; ferredoxin 615473 fdxB 3517063 fdxB Candidatus Pelagibacter ubique HTCC1062 ferredoxin YP_266050.1 615153 D 335992 CDS YP_266051.1 71083332 3517064 615474..616490 1 NC_007205.1 thioredoxin-disulfide reductase 616490 trxB2 3517064 trxB2 Candidatus Pelagibacter ubique HTCC1062 thioredoxin-disulfide reductase YP_266051.1 615474 D 335992 CDS YP_266052.1 71083333 3517065 616487..617113 1 NC_007205.1 glutathione S-transferase 617113 yfcG 3517065 yfcG Candidatus Pelagibacter ubique HTCC1062 glutathione S-transferase YP_266052.1 616487 D 335992 CDS YP_266053.1 71083334 3517066 617122..617895 1 NC_007205.1 MOSC domain-containing protein 617895 3517066 SAR11_0629 Candidatus Pelagibacter ubique HTCC1062 MOSC domain-containing protein YP_266053.1 617122 D 335992 CDS YP_266054.2 304570554 3517067 complement(617929..618471) 1 NC_007205.1 DnaK suppressor protein 618471 dksA 3517067 dksA Candidatus Pelagibacter ubique HTCC1062 DnaK suppressor protein YP_266054.2 617929 R 335992 CDS YP_266056.1 71083337 3517069 618580..619872 1 NC_007205.1 hypothetical protein 619872 3517069 SAR11_0632 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266056.1 618580 D 335992 CDS YP_266057.1 71083338 3517070 619869..620741 1 NC_007205.1 glycosyl transferase family protein 620741 3517070 SAR11_0633 Candidatus Pelagibacter ubique HTCC1062 glycosyl transferase family protein YP_266057.1 619869 D 335992 CDS YP_266058.1 71083339 3517071 complement(620734..622014) 1 NC_007205.1 hypothetical protein 622014 umuC 3517071 umuC Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266058.1 620734 R 335992 CDS YP_266059.1 71083340 3517072 complement(621992..622387) 1 NC_007205.1 similar to COG1974: SOS-response transcriptional repressors (RecA-mediated autopeptidases); hypothetical protein 622387 mucA 3517072 mucA Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266059.1 621992 R 335992 CDS YP_266060.1 71083341 3517073 622553..623122 1 NC_007205.1 hypothetical protein 623122 3517073 SAR11_0636 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266060.1 622553 D 335992 CDS YP_266061.1 71083342 3517074 623123..623485 1 NC_007205.1 similar to protein of unknown function DUF636; hypothetical protein 623485 3517074 SAR11_0637 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266061.1 623123 D 335992 CDS YP_266062.1 71083343 3517075 623595..624419 1 NC_007205.1 phosphoribulokinase/uridine kinase family protein 624419 3517075 SAR11_0638 Candidatus Pelagibacter ubique HTCC1062 phosphoribulokinase/uridine kinase family protein YP_266062.1 623595 D 335992 CDS YP_266063.1 71083344 3517076 624419..625717 1 NC_007205.1 outer membrane protein TolC 625717 tolC 3517076 tolC Candidatus Pelagibacter ubique HTCC1062 outer membrane protein TolC YP_266063.1 624419 D 335992 CDS YP_266064.2 304570555 3516867 625822..626973 1 NC_007205.1 recA protein 626973 recA 3516867 recA Candidatus Pelagibacter ubique HTCC1062 recA protein YP_266064.2 625822 D 335992 CDS YP_266065.1 71083346 3516868 complement(627169..628284) 1 NC_007205.1 trypsin-like serine and cysteine proteases; serine protease 628284 3516868 SAR11_0642 Candidatus Pelagibacter ubique HTCC1062 serine protease YP_266065.1 627169 R 335992 CDS YP_266066.1 71083347 3516869 628540..631209 1 NC_007205.1 alanyl-tRNA synthetase 631209 alaS 3516869 alaS Candidatus Pelagibacter ubique HTCC1062 alanyl-tRNA synthetase YP_266066.1 628540 D 335992 CDS YP_266067.1 71083348 3516870 complement(631202..632416) 1 NC_007205.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 632416 icdA 3516870 icdA Candidatus Pelagibacter ubique HTCC1062 isocitrate dehydrogenase YP_266067.1 631202 R 335992 CDS YP_266068.1 71083349 3516871 632494..633141 1 NC_007205.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 633141 psd2 3516871 psd2 Candidatus Pelagibacter ubique HTCC1062 phosphatidylserine decarboxylase YP_266068.1 632494 D 335992 CDS YP_266069.1 71083350 3516872 633145..633948 1 NC_007205.1 phosphatidylserine synthase 633948 pssA 3516872 pssA Candidatus Pelagibacter ubique HTCC1062 phosphatidylserine synthase YP_266069.1 633145 D 335992 CDS YP_266070.1 71083351 3516873 633949..634860 1 NC_007205.1 glycosyl transferase family protein 634860 3516873 SAR11_0647 Candidatus Pelagibacter ubique HTCC1062 glycosyl transferase family protein YP_266070.1 633949 D 335992 CDS YP_266071.1 71083352 3516874 634861..635472 1 NC_007205.1 FtsJ-like methyltransferase 635472 ftsJ 3516874 ftsJ Candidatus Pelagibacter ubique HTCC1062 FtsJ-like methyltransferase YP_266071.1 634861 D 335992 CDS YP_266072.1 71083353 3516875 635510..636586 1 NC_007205.1 IMP dehydrogenase 636586 guaB 3516875 guaB Candidatus Pelagibacter ubique HTCC1062 IMP dehydrogenase YP_266072.1 635510 D 335992 CDS YP_266073.1 71083354 3516876 636586..637023 1 NC_007205.1 hypothetical protein 637023 3516876 SAR11_0650 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266073.1 636586 D 335992 CDS YP_266074.1 71083355 3516877 637013..638578 1 NC_007205.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 638578 guaA 3516877 guaA Candidatus Pelagibacter ubique HTCC1062 GMP synthase YP_266074.1 637013 D 335992 CDS YP_266075.1 71083356 3516878 638605..639024 1 NC_007205.1 lactoylglutathione lyase 639024 gloA 3516878 gloA Candidatus Pelagibacter ubique HTCC1062 lactoylglutathione lyase YP_266075.1 638605 D 335992 CDS YP_266076.1 71083357 3516879 639028..639801 1 NC_007205.1 3-methyl-2-oxobutanoate hydroxymethyltransferase 639801 panB 3516879 panB Candidatus Pelagibacter ubique HTCC1062 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_266076.1 639028 D 335992 CDS YP_266077.1 71083358 3516880 complement(639803..640417) 1 NC_007205.1 hypothetical protein 640417 3516880 SAR11_0654 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266077.1 639803 R 335992 CDS YP_266078.1 71083359 3516881 complement(640515..641771) 1 NC_007205.1 Leu/Ile/Val-binding protein 641771 braC 3516881 braC Candidatus Pelagibacter ubique HTCC1062 Leu/Ile/Val-binding protein YP_266078.1 640515 R 335992 CDS YP_266079.1 71083360 3516882 641907..642746 1 NC_007205.1 branched chain amino acid ABC transporter 642746 braD 3516882 braD Candidatus Pelagibacter ubique HTCC1062 branched chain amino acid ABC transporter YP_266079.1 641907 D 335992 CDS YP_266080.1 71083361 3516883 642749..643759 1 NC_007205.1 branched chain amino acid ABC transporter 643759 braE 3516883 braE Candidatus Pelagibacter ubique HTCC1062 branched chain amino acid ABC transporter YP_266080.1 642749 D 335992 CDS YP_266081.1 71083362 3516884 643756..644478 1 NC_007205.1 probable high-affinity branched-chain amino acid transport ATP-binding protein; LivG-like protein 644478 3516884 SAR11_0658 Candidatus Pelagibacter ubique HTCC1062 LivG-like protein YP_266081.1 643756 D 335992 CDS YP_266082.1 71083363 3516885 644468..645175 1 NC_007205.1 high-affinity branched-chain amino acid transport ATP-binding protein 645175 braG 3516885 braG Candidatus Pelagibacter ubique HTCC1062 high-affinity branched-chain amino acid transport ATP-binding protein YP_266082.1 644468 D 335992 CDS YP_266083.1 71083364 3516886 complement(645176..645961) 1 NC_007205.1 hypothetical protein 645961 3516886 SAR11_0660 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266083.1 645176 R 335992 CDS YP_266084.1 71083365 3516907 complement(645966..646457) 1 NC_007205.1 hypothetical protein 646457 3516907 SAR11_0661 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266084.1 645966 R 335992 CDS YP_266085.1 71083366 3516908 complement(646461..647258) 1 NC_007205.1 LamB/YcsF family protein 647258 ybgL 3516908 ybgL Candidatus Pelagibacter ubique HTCC1062 LamB/YcsF family protein YP_266085.1 646461 R 335992 CDS YP_266086.1 71083367 3516909 647262..647948 1 NC_007205.1 allophanate hydrolase subunit 1 647948 kipI 3516909 kipI Candidatus Pelagibacter ubique HTCC1062 allophanate hydrolase subunit 1 YP_266086.1 647262 D 335992 CDS YP_266087.1 71083368 3516910 647941..648894 1 NC_007205.1 allophanate hydrolase subunit 2 648894 ybgK 3516910 ybgK Candidatus Pelagibacter ubique HTCC1062 allophanate hydrolase subunit 2 YP_266087.1 647941 D 335992 CDS YP_266088.1 71083369 3516911 648881..649762 1 NC_007205.1 hypothetical protein 649762 3516911 SAR11_0665 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266088.1 648881 D 335992 CDS YP_266089.1 71083370 3516912 649954..651060 1 NC_007205.1 glycine cleavage system protein T2 651060 gcvT 3516912 gcvT Candidatus Pelagibacter ubique HTCC1062 glycine cleavage system protein T2 YP_266089.1 649954 D 335992 CDS YP_266090.1 71083371 3516913 651057..651437 1 NC_007205.1 glycine cleavage H-protein 651437 gcvH 3516913 gcvH Candidatus Pelagibacter ubique HTCC1062 glycine cleavage H-protein YP_266090.1 651057 D 335992 CDS YP_266091.1 71083372 3516914 651438..654296 1 NC_007205.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 654296 gcvP 3516914 gcvP Candidatus Pelagibacter ubique HTCC1062 glycine dehydrogenase YP_266091.1 651438 D 335992 CDS YP_266092.1 71083373 3516915 654309..655553 1 NC_007205.1 flavin containing amine oxidoreductas 655553 3516915 SAR11_0669 Candidatus Pelagibacter ubique HTCC1062 flavin containing amine oxidoreductas YP_266092.1 654309 D 335992 CDS YP_266093.1 71083374 3516916 655546..656313 1 NC_007205.1 similar to protein of unknown function (DUF1365); hypothetical protein 656313 3516916 SAR11_0670 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266093.1 655546 D 335992 CDS YP_266094.1 71083375 3516917 656313..657491 1 NC_007205.1 cfa-like protein; cyclopropane-fatty-acyl-phospholipid synthase 657491 3516917 SAR11_0672 Candidatus Pelagibacter ubique HTCC1062 cyclopropane-fatty-acyl-phospholipid synthase YP_266094.1 656313 D 335992 CDS YP_266095.1 71083376 3516918 657505..658053 1 NC_007205.1 hypothetical protein 658053 3516918 SAR11_0673 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266095.1 657505 D 335992 CDS YP_266096.1 71083377 3516919 complement(658050..658811) 1 NC_007205.1 short chain dehydrogenase 658811 3516919 SAR11_0674 Candidatus Pelagibacter ubique HTCC1062 short chain dehydrogenase YP_266096.1 658050 R 335992 CDS YP_266097.1 71083378 3516920 658833..659300 1 NC_007205.1 TspO/MBR family protein 659300 tspo 3516920 tspo Candidatus Pelagibacter ubique HTCC1062 TspO/MBR family protein YP_266097.1 658833 D 335992 CDS YP_266098.1 71083379 3516921 659309..660412 1 NC_007205.1 similar to FAD dependent oxidoreductase family; hypothetical protein 660412 3516921 SAR11_0676 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266098.1 659309 D 335992 CDS YP_266099.1 71083380 3516922 660441..660977 1 NC_007205.1 similar to COG4627: Uncharacterized protein conserved in bacteria; hypothetical protein 660977 3516922 SAR11_0677 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266099.1 660441 D 335992 CDS YP_266100.1 71083381 3516923 complement(660987..662438) 1 NC_007205.1 similar to Bacillus cereus ATCC 14579 sp|Q813A5|YY99_BACCR hypothetical UPF006; hypothetical protein 662438 3516923 SAR11_0678 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266100.1 660987 R 335992 CDS YP_266101.1 71083382 3516924 complement(662447..665215) 1 NC_007205.1 formate dehydrogenase subunit alpha (fdhF-2) 665215 fdhF 3516924 fdhF Candidatus Pelagibacter ubique HTCC1062 formate dehydrogenase subunit alpha (fdhF-2) YP_266101.1 662447 R 335992 CDS YP_266102.2 304570556 3516925 complement(665215..666873) 1 NC_007205.1 NAD-dependent formate dehydrogenase subunit beta 666873 fdsB 3516925 fdsB Candidatus Pelagibacter ubique HTCC1062 NAD-dependent formate dehydrogenase subunit beta YP_266102.2 665215 R 335992 CDS YP_266103.1 71083384 3517930 complement(666877..667719) 1 NC_007205.1 formate dehydrogenase subunit D 667719 fdhD 3517930 fdhD Candidatus Pelagibacter ubique HTCC1062 formate dehydrogenase subunit D YP_266103.1 666877 R 335992 CDS YP_266104.1 71083385 3517931 complement(667724..668200) 1 NC_007205.1 HPP family protein 668200 3517931 SAR11_0682 Candidatus Pelagibacter ubique HTCC1062 HPP family protein YP_266104.1 667724 R 335992 CDS YP_266105.1 71083386 3517932 complement(668203..668601) 1 NC_007205.1 NifU-like domain-containing protein 668601 3517932 SAR11_0683 Candidatus Pelagibacter ubique HTCC1062 NifU-like domain-containing protein YP_266105.1 668203 R 335992 CDS YP_266106.1 71083387 3517933 668645..669265 1 NC_007205.1 similar to COG0746: Molybdopterin-guanine dinucleotide biosynthesis protein A; hypothetical protein 669265 mobA 3517933 mobA Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266106.1 668645 D 335992 CDS YP_266107.1 71083388 3517934 669258..670505 1 NC_007205.1 molybdopterin biosynthesis protein moeA 670505 moeA 3517934 moeA Candidatus Pelagibacter ubique HTCC1062 molybdopterin biosynthesis protein moeA YP_266107.1 669258 D 335992 CDS YP_266108.1 71083389 3517935 670773..671459 1 NC_007205.1 hypothetical protein 671459 3517935 SAR11_0686 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266108.1 670773 D 335992 CDS YP_266109.1 71083390 3517936 671465..672682 1 NC_007205.1 creatinase 672682 pepQ 3517936 pepQ Candidatus Pelagibacter ubique HTCC1062 creatinase YP_266109.1 671465 D 335992 CDS YP_266110.1 71083391 3517937 672686..673798 1 NC_007205.1 glycine amidinotransferase 673798 gatM 3517937 gatM Candidatus Pelagibacter ubique HTCC1062 glycine amidinotransferase YP_266110.1 672686 D 335992 CDS YP_266111.1 71083392 3517938 673801..674853 1 NC_007205.1 threonine aldolase 674853 3517938 SAR11_0689 Candidatus Pelagibacter ubique HTCC1062 threonine aldolase YP_266111.1 673801 D 335992 CDS YP_266112.1 71083393 3517939 complement(674846..675040) 1 NC_007205.1 hypothetical protein 675040 3517939 SAR11_0690 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266112.1 674846 R 335992 CDS YP_266113.1 71083394 3517940 complement(675167..676099) 1 NC_007205.1 similar to hypothetical protein EBAC750-09G06.38 from uncultured bacterium 314; hypothetical protein 676099 3517940 SAR11_0691 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266113.1 675167 R 335992 CDS YP_266114.1 71083395 3517941 complement(676379..676864) 1 NC_007205.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 676864 yajQ 3517941 yajQ Candidatus Pelagibacter ubique HTCC1062 nucleotide-binding protein YP_266114.1 676379 R 335992 CDS YP_266115.1 71083396 3517942 676886..677161 1 NC_007205.1 SlyX family protein 677161 slyX 3517942 slyX Candidatus Pelagibacter ubique HTCC1062 SlyX family protein YP_266115.1 676886 D 335992 CDS YP_266116.1 71083397 3517943 677178..678359 1 NC_007205.1 hypothetical protein 678359 3517943 SAR11_0694 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266116.1 677178 D 335992 CDS YP_266117.1 71083398 3517944 complement(678384..679706) 1 NC_007205.1 similar to mfs superfamily; transporter 679706 ycaD 3517944 ycaD Candidatus Pelagibacter ubique HTCC1062 transporter YP_266117.1 678384 R 335992 CDS YP_266118.1 71083399 3517945 complement(679765..680625) 1 NC_007205.1 similar to COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 680625 salY 3517945 salY Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266118.1 679765 R 335992 CDS YP_266119.1 71083400 3517946 complement(680622..681551) 1 NC_007205.1 glutathione synthase 681551 gshB 3517946 gshB Candidatus Pelagibacter ubique HTCC1062 glutathione synthase YP_266119.1 680622 R 335992 CDS YP_266120.1 71083401 3517947 complement(681541..682836) 1 NC_007205.1 glutamate--cysteine ligase 682836 gsh1 3517947 gsh1 Candidatus Pelagibacter ubique HTCC1062 glutamate--cysteine ligase YP_266120.1 681541 R 335992 CDS YP_266121.1 71083402 3517948 complement(682918..684399) 1 NC_007205.1 amidophosphoribosyltransferase 684399 purF 3517948 purF Candidatus Pelagibacter ubique HTCC1062 amidophosphoribosyltransferase YP_266121.1 682918 R 335992 CDS YP_266122.1 71083403 3517949 complement(684353..684898) 1 NC_007205.1 colicin V production protein 684898 cvpA 3517949 cvpA Candidatus Pelagibacter ubique HTCC1062 colicin V production protein YP_266122.1 684353 R 335992 CDS YP_266123.1 71083404 3516829 complement(684906..687290) 1 NC_007205.1 hypothetical protein 687290 acrB 3516829 acrB Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266123.1 684906 R 335992 CDS YP_266124.1 71083405 3516830 complement(687312..688730) 1 NC_007205.1 replicative DNA helicase (dnaB) 688730 dnaB 3516830 dnaB Candidatus Pelagibacter ubique HTCC1062 replicative DNA helicase (dnaB) YP_266124.1 687312 R 335992 CDS YP_266125.1 71083406 3516831 complement(688798..689256) 1 NC_007205.1 50S ribosomal protein L9 689256 csn1 3516831 csn1 Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L9 YP_266125.1 688798 R 335992 CDS YP_266126.1 71083407 3516832 complement(689257..689535) 1 NC_007205.1 30S ribosomal protein S18 689535 rpsR 3516832 rpsR Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S18 YP_266126.1 689257 R 335992 CDS YP_266127.1 71083408 3516833 complement(689538..689903) 1 NC_007205.1 30S ribosomal protein S6 689903 rpsF 3516833 rpsF Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S6 YP_266127.1 689538 R 335992 CDS YP_266128.1 71083409 3516834 689990..690922 1 NC_007205.1 ACP S-malonyltransferase 690922 fabD 3516834 fabD Candidatus Pelagibacter ubique HTCC1062 ACP S-malonyltransferase YP_266128.1 689990 D 335992 CDS YP_266129.1 71083410 3516835 690915..691652 1 NC_007205.1 3-oxoacyl-ACP reductase 691652 fabG 3516835 fabG Candidatus Pelagibacter ubique HTCC1062 3-oxoacyl-ACP reductase YP_266129.1 690915 D 335992 CDS YP_266130.1 71083411 3516836 691701..691940 1 NC_007205.1 acyl carrier protein 691940 acpP 3516836 acpP Candidatus Pelagibacter ubique HTCC1062 acyl carrier protein YP_266130.1 691701 D 335992 CDS YP_266131.1 71083412 3516837 691948..692580 1 NC_007205.1 guanylate kinase 692580 gmk 3516837 gmk Candidatus Pelagibacter ubique HTCC1062 guanylate kinase YP_266131.1 691948 D 335992 CDS YP_266132.1 71083413 3516838 complement(692569..693357) 1 NC_007205.1 dimethyladenosine transferase 693357 ksgA 3516838 ksgA Candidatus Pelagibacter ubique HTCC1062 dimethyladenosine transferase YP_266132.1 692569 R 335992 CDS YP_266133.1 71083414 3516839 complement(693358..694320) 1 NC_007205.1 4-hydroxythreonine-4-phosphate dehydrogenase 694320 pdxA 3516839 pdxA Candidatus Pelagibacter ubique HTCC1062 4-hydroxythreonine-4-phosphate dehydrogenase YP_266133.1 693358 R 335992 CDS YP_266134.1 71083415 3516840 complement(694313..695230) 1 NC_007205.1 SurA-like protein 695230 3516840 SAR11_0712 Candidatus Pelagibacter ubique HTCC1062 SurA-like protein YP_266134.1 694313 R 335992 CDS YP_266135.1 71083416 3516841 complement(695237..697681) 1 NC_007205.1 organic solvent tolerance-like protein 697681 ostA 3516841 ostA Candidatus Pelagibacter ubique HTCC1062 organic solvent tolerance-like protein YP_266135.1 695237 R 335992 CDS YP_266136.1 71083417 3516842 complement(697671..698744) 1 NC_007205.1 YjgP/YjgQ family permease 698744 3516842 SAR11_0714 Candidatus Pelagibacter ubique HTCC1062 YjgP/YjgQ family permease YP_266136.1 697671 R 335992 CDS YP_266137.1 71083418 3516843 complement(698741..699877) 1 NC_007205.1 YjgP/YjgQ family permease 699877 3516843 SAR11_0715 Candidatus Pelagibacter ubique HTCC1062 YjgP/YjgQ family permease YP_266137.1 698741 R 335992 CDS YP_266138.1 71083419 3516844 699939..701396 1 NC_007205.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 701396 pepA 3516844 pepA Candidatus Pelagibacter ubique HTCC1062 leucyl aminopeptidase YP_266138.1 699939 D 335992 CDS YP_266139.1 71083420 3516845 701389..701799 1 NC_007205.1 nucleoside diphosphate kinase 701799 ndk 3516845 ndk Candidatus Pelagibacter ubique HTCC1062 nucleoside diphosphate kinase YP_266139.1 701389 D 335992 CDS YP_266140.1 71083421 3516846 complement(701796..702374) 1 NC_007205.1 phosphoribosylglycinamide formyltransferase 702374 purN 3516846 purN Candidatus Pelagibacter ubique HTCC1062 phosphoribosylglycinamide formyltransferase YP_266140.1 701796 R 335992 CDS YP_266141.1 71083422 3516847 complement(702352..703380) 1 NC_007205.1 phosphoribosylformylglycinamidine cyclo-ligase 703380 purM 3516847 purM Candidatus Pelagibacter ubique HTCC1062 phosphoribosylformylglycinamidine cyclo-ligase YP_266141.1 702352 R 335992 CDS YP_266142.2 304570557 3517910 703392..704471 1 NC_007205.1 hypothetical protein 704471 3517910 SAR11_0720 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266142.2 703392 D 335992 CDS YP_266143.1 71083424 3517911 704468..705130 1 NC_007205.1 DNA replication initiation ATPase 705130 3517911 SAR11_0721 Candidatus Pelagibacter ubique HTCC1062 DNA replication initiation ATPase YP_266143.1 704468 D 335992 CDS YP_266144.1 71083425 3517912 705131..706915 1 NC_007205.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 706915 aspS 3517912 aspS Candidatus Pelagibacter ubique HTCC1062 aspartyl-tRNA synthetase YP_266144.1 705131 D 335992 CDS YP_266145.1 71083426 3517913 complement(706918..707739) 1 NC_007205.1 possibly vitamin B12-dependent; ribonucleotide reductase subunit alpha 707739 nrdE 3517913 nrdE Candidatus Pelagibacter ubique HTCC1062 ribonucleotide reductase subunit alpha YP_266145.1 706918 R 335992 CDS YP_266146.1 71083427 3517914 707855..708214 1 NC_007205.1 NADH-ubiquinone oxidoreductase 17.2 kD subunit of complex I 708214 3517914 SAR11_0724 Candidatus Pelagibacter ubique HTCC1062 NADH-ubiquinone oxidoreductase 17.2 kD subunit of complex I YP_266146.1 707855 D 335992 CDS YP_266147.1 71083428 3517915 708174..708581 1 NC_007205.1 similar to Caulobacter crescentus CB15 gi|25397377|pir||A87483 hypothetical protein CC1; hypothetical protein 708581 3517915 SAR11_0725 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266147.1 708174 D 335992 CDS YP_266148.1 71083429 3517916 complement(708578..709915) 1 NC_007205.1 biotin carboxylase 709915 3517916 SAR11_0726 Candidatus Pelagibacter ubique HTCC1062 biotin carboxylase YP_266148.1 708578 R 335992 CDS YP_266149.1 71083430 3517917 complement(709915..710340) 1 NC_007205.1 AccB; acetyl-CoA carboxylase biotin carboxyl carrier protein 710340 accB 3517917 accB Candidatus Pelagibacter ubique HTCC1062 acetyl-CoA carboxylase biotin carboxyl carrier protein YP_266149.1 709915 R 335992 CDS YP_266150.1 71083431 3517918 complement(710327..710776) 1 NC_007205.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 710776 aroQ 3517918 aroQ Candidatus Pelagibacter ubique HTCC1062 3-dehydroquinate dehydratase YP_266150.1 710327 R 335992 CDS YP_266151.1 71083432 3517919 710793..711011 1 NC_007205.1 thiamine biosynthesis protein ThiS 711011 3517919 SAR11_0729 Candidatus Pelagibacter ubique HTCC1062 thiamine biosynthesis protein ThiS YP_266151.1 710793 D 335992 CDS YP_266152.1 71083433 3517920 711014..711787 1 NC_007205.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 711787 thiG 3517920 thiG Candidatus Pelagibacter ubique HTCC1062 thiazole synthase YP_266152.1 711014 D 335992 CDS YP_266153.1 71083434 3517921 complement(711784..713643) 1 NC_007205.1 rne/rng; ribonuclease E/G 713643 rne 3517921 rne Candidatus Pelagibacter ubique HTCC1062 ribonuclease E/G YP_266153.1 711784 R 335992 CDS YP_266154.1 71083435 3517922 713746..716079 1 NC_007205.1 penicillin-binding protein 1A 716079 mrcA 3517922 mrcA Candidatus Pelagibacter ubique HTCC1062 penicillin-binding protein 1A YP_266154.1 713746 D 335992 CDS YP_266155.1 71083436 3517923 716320..717174 1 NC_007205.1 peptide chain release factor 2 717174 prfB 3517923 prfB Candidatus Pelagibacter ubique HTCC1062 peptide chain release factor 2 YP_266155.1 716320 D 335992 CDS YP_266156.1 71083437 3517924 717174..719366 1 NC_007205.1 hypothetical protein 719366 3517924 SAR11_0734 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266156.1 717174 D 335992 CDS YP_266157.1 71083438 3517925 complement(719363..720592) 1 NC_007205.1 tyrosyl-tRNA synthetase 720592 tyrS 3517925 tyrS Candidatus Pelagibacter ubique HTCC1062 tyrosyl-tRNA synthetase YP_266157.1 719363 R 335992 CDS YP_266158.1 71083439 3517926 720637..721764 1 NC_007205.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 721764 anmK 3517926 anmK Candidatus Pelagibacter ubique HTCC1062 anhydro-N-acetylmuramic acid kinase YP_266158.1 720637 D 335992 CDS YP_266159.1 71083440 3517927 complement(721767..722423) 1 NC_007205.1 alpha/beta hydrolase 722423 3517927 SAR11_0737 Candidatus Pelagibacter ubique HTCC1062 alpha/beta hydrolase YP_266159.1 721767 R 335992 CDS YP_266160.1 71083441 3517928 722560..722985 1 NC_007205.1 transcriptional regulator 722985 sufA 3517928 sufA Candidatus Pelagibacter ubique HTCC1062 transcriptional regulator YP_266160.1 722560 D 335992 CDS YP_266161.1 71083442 3517929 722987..724429 1 NC_007205.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase 724429 sufB 3517929 sufB Candidatus Pelagibacter ubique HTCC1062 cysteine desulfurase YP_266161.1 722987 D 335992 CDS YP_266162.1 71083443 3516810 724429..725163 1 NC_007205.1 FeS assembly ATPase SufC 725163 sufC 3516810 sufC Candidatus Pelagibacter ubique HTCC1062 FeS assembly ATPase SufC YP_266162.1 724429 D 335992 CDS YP_266163.1 71083444 3516811 725164..726408 1 NC_007205.1 FeS assembly protein sufD 726408 sufD 3516811 sufD Candidatus Pelagibacter ubique HTCC1062 FeS assembly protein sufD YP_266163.1 725164 D 335992 CDS YP_266164.1 71083445 3516812 726405..727622 1 NC_007205.1 similar to Escherichia coli csdB, nifs Family; selenocysteine lyase chain A 727622 csdB 3516812 csdB Candidatus Pelagibacter ubique HTCC1062 selenocysteine lyase chain A YP_266164.1 726405 D 335992 CDS YP_266165.1 71083446 3516813 727622..728092 1 NC_007205.1 involved in Fe-S cluster formation; nifU-like protein 728092 sufE 3516813 sufE Candidatus Pelagibacter ubique HTCC1062 nifU-like protein YP_266165.1 727622 D 335992 CDS YP_266166.1 71083447 3516814 728096..728392 1 NC_007205.1 phenylacetic acid degradation protein 728392 paaD 3516814 paaD Candidatus Pelagibacter ubique HTCC1062 phenylacetic acid degradation protein YP_266166.1 728096 D 335992 CDS YP_266167.1 71083448 3516815 728392..728724 1 NC_007205.1 hesB protein 728724 hesB 3516815 hesB Candidatus Pelagibacter ubique HTCC1062 hesB protein YP_266167.1 728392 D 335992 CDS YP_266168.1 71083449 3516816 728783..728953 1 NC_007205.1 hypothetical protein 728953 3516816 SAR11_0746 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266168.1 728783 D 335992 CDS YP_266169.1 71083450 3516817 complement(728960..730366) 1 NC_007205.1 glutamine synthetase 730366 glnA 3516817 glnA Candidatus Pelagibacter ubique HTCC1062 glutamine synthetase YP_266169.1 728960 R 335992 CDS YP_266170.1 71083451 3516818 730513..730992 1 NC_007205.1 prolyl-tRNA synthetase 730992 3516818 SAR11_0748 Candidatus Pelagibacter ubique HTCC1062 prolyl-tRNA synthetase YP_266170.1 730513 D 335992 CDS YP_266171.1 71083452 3516819 730989..731876 1 NC_007205.1 membrane spanning protein; ABC transporter 731876 3516819 SAR11_0749 Candidatus Pelagibacter ubique HTCC1062 ABC transporter YP_266171.1 730989 D 335992 CDS YP_266172.1 71083453 3516820 complement(731869..732777) 1 NC_007205.1 homocysteine S-methyltransferase 732777 mmuM 3516820 mmuM Candidatus Pelagibacter ubique HTCC1062 homocysteine S-methyltransferase YP_266172.1 731869 R 335992 CDS YP_266173.1 71083454 3516821 complement(732939..733529) 1 NC_007205.1 hypothetical protein 733529 3516821 SAR11_0751 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266173.1 732939 R 335992 CDS YP_266174.1 71083455 3516822 complement(733559..734305) 1 NC_007205.1 transmembrane protein 734305 3516822 SAR11_0752 Candidatus Pelagibacter ubique HTCC1062 transmembrane protein YP_266174.1 733559 R 335992 CDS YP_266175.1 71083456 3516823 734324..734824 1 NC_007205.1 molybdopterin biosynthesis protein 734824 moaB 3516823 moaB Candidatus Pelagibacter ubique HTCC1062 molybdopterin biosynthesis protein YP_266175.1 734324 D 335992 CDS YP_266176.1 71083457 3516824 complement(734825..735070) 1 NC_007205.1 similar to COG3492: Uncharacterized protein conserved in bacteria; hypothetical protein 735070 3516824 SAR11_0755 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266176.1 734825 R 335992 CDS YP_266177.1 71083458 3516825 735368..736918 1 NC_007205.1 acetaldehyde dehydrogenase II 736918 aldA 3516825 aldA Candidatus Pelagibacter ubique HTCC1062 acetaldehyde dehydrogenase II YP_266177.1 735368 D 335992 CDS YP_266178.1 71083459 3516826 736964..737311 1 NC_007205.1 hypothetical protein 737311 3516826 SAR11_0757 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266178.1 736964 D 335992 CDS YP_266179.1 71083460 3516827 complement(737308..737877) 1 NC_007205.1 hypothetical protein 737877 yedZ 3516827 yedZ Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266179.1 737308 R 335992 CDS YP_266180.1 71083461 3516828 complement(737902..738807) 1 NC_007205.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 738807 yedY 3516828 yedY Candidatus Pelagibacter ubique HTCC1062 sulfite oxidase subunit YedY YP_266180.1 737902 R 335992 CDS YP_266181.1 71083462 3517402 complement(738804..739247) 1 NC_007205.1 molybdopterin biosynthesis protein subunit E 739247 moaE 3517402 moaE Candidatus Pelagibacter ubique HTCC1062 molybdopterin biosynthesis protein subunit E YP_266181.1 738804 R 335992 CDS YP_266182.1 71083463 3517403 complement(739247..739516) 1 NC_007205.1 molybdopterin biosynthesis protein moaD 739516 moaD 3517403 moaD Candidatus Pelagibacter ubique HTCC1062 molybdopterin biosynthesis protein moaD YP_266182.1 739247 R 335992 CDS YP_266183.1 71083464 3517404 complement(739519..740064) 1 NC_007205.1 molybdopterin cofactor synthesis protein 740064 moaC 3517404 moaC Candidatus Pelagibacter ubique HTCC1062 molybdopterin cofactor synthesis protein YP_266183.1 739519 R 335992 CDS YP_266184.1 71083465 3517405 complement(740065..741057) 1 NC_007205.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 741057 moaA 3517405 moaA Candidatus Pelagibacter ubique HTCC1062 molybdenum cofactor biosynthesis protein A YP_266184.1 740065 R 335992 CDS YP_266185.1 71083466 3517406 741093..741926 1 NC_007205.1 deoxygenase 741926 3517406 SAR11_0764 Candidatus Pelagibacter ubique HTCC1062 deoxygenase YP_266185.1 741093 D 335992 CDS YP_266186.1 71083467 3517407 complement(741963..742289) 1 NC_007205.1 hypothetical protein 742289 3517407 SAR11_0765 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266186.1 741963 R 335992 CDS YP_266187.1 71083468 3517408 742383..743825 1 NC_007205.1 succinate-semialdehyde dehydrogenase (NAD(P)) 743825 gabD 3517408 gabD Candidatus Pelagibacter ubique HTCC1062 succinate-semialdehyde dehydrogenase (NAD(P)) YP_266187.1 742383 D 335992 CDS YP_266188.1 71083469 3517409 743871..744617 1 NC_007205.1 unknown specificity; short chain dehydrogenase 744617 3517409 SAR11_0767 Candidatus Pelagibacter ubique HTCC1062 short chain dehydrogenase YP_266188.1 743871 D 335992 CDS YP_266189.1 71083470 3517410 744621..745523 1 NC_007205.1 NAGC-like transcription regulator 745523 yajF 3517410 yajF Candidatus Pelagibacter ubique HTCC1062 NAGC-like transcription regulator YP_266189.1 744621 D 335992 CDS YP_266190.1 71083471 3517411 745724..746983 1 NC_007205.1 sugar ABC transporter substrate-binding protein 746983 3517411 SAR11_0769 Candidatus Pelagibacter ubique HTCC1062 sugar ABC transporter substrate-binding protein YP_266190.1 745724 D 335992 CDS YP_266191.1 71083472 3517412 747047..747919 1 NC_007205.1 permease component; ABC-type sugar transport system 747919 3517412 SAR11_0770 Candidatus Pelagibacter ubique HTCC1062 ABC-type sugar transport system YP_266191.1 747047 D 335992 CDS YP_266192.1 71083473 3517413 747909..748811 1 NC_007205.1 permease component; ABC-type sugar transport system 748811 3517413 SAR11_0771 Candidatus Pelagibacter ubique HTCC1062 ABC-type sugar transport system YP_266192.1 747909 D 335992 CDS YP_266193.1 71083474 3517414 748813..749913 1 NC_007205.1 ATP-binding protein; sugar ABC transporter 749913 malK 3517414 malK Candidatus Pelagibacter ubique HTCC1062 sugar ABC transporter YP_266193.1 748813 D 335992 CDS YP_266194.1 71083475 3517415 749914..750675 1 NC_007205.1 unknown specificity; short chain dehydrogenase 750675 3517415 SAR11_0773 Candidatus Pelagibacter ubique HTCC1062 short chain dehydrogenase YP_266194.1 749914 D 335992 CDS YP_266195.1 71083476 3517416 750690..752465 1 NC_007205.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 752465 edd 3517416 edd Candidatus Pelagibacter ubique HTCC1062 dihydroxy-acid dehydratase YP_266195.1 750690 D 335992 CDS YP_266196.1 71083477 3517417 752477..753220 1 NC_007205.1 oxidoreductase 753220 ucpA 3517417 ucpA Candidatus Pelagibacter ubique HTCC1062 oxidoreductase YP_266196.1 752477 D 335992 CDS YP_266197.1 71083478 3517418 753242..754084 1 NC_007205.1 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 754084 hpcE 3517418 hpcE Candidatus Pelagibacter ubique HTCC1062 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase YP_266197.1 753242 D 335992 CDS YP_266198.1 71083479 3517419 754086..754967 1 NC_007205.1 gluconolactonase 754967 gnl 3517419 gnl Candidatus Pelagibacter ubique HTCC1062 gluconolactonase YP_266198.1 754086 D 335992 CDS YP_266199.1 71083480 3517420 755023..755892 1 NC_007205.1 6-phosphogluconate dehydrogenase 755892 gnd 3517420 gnd Candidatus Pelagibacter ubique HTCC1062 6-phosphogluconate dehydrogenase YP_266199.1 755023 D 335992 CDS YP_266200.1 71083481 3517421 755889..756734 1 NC_007205.1 fumarylacetoacetate hydrolase family protein 756734 hpaG 3517421 hpaG Candidatus Pelagibacter ubique HTCC1062 fumarylacetoacetate hydrolase family protein YP_266200.1 755889 D 335992 CDS YP_266201.1 71083482 3516771 756745..759432 1 NC_007205.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 759432 ppc 3516771 ppc Candidatus Pelagibacter ubique HTCC1062 phosphoenolpyruvate carboxylase YP_266201.1 756745 D 335992 CDS YP_266202.1 71083483 3516772 759434..760141 1 NC_007205.1 holocytochrome-c synthase ccdA 760141 ccdA 3516772 ccdA Candidatus Pelagibacter ubique HTCC1062 holocytochrome-c synthase ccdA YP_266202.1 759434 D 335992 CDS YP_266203.1 71083484 3516773 760165..760746 1 NC_007205.1 renamed azoR; ACP phosphodiesterase 760746 azoR 3516773 azoR Candidatus Pelagibacter ubique HTCC1062 ACP phosphodiesterase YP_266203.1 760165 D 335992 CDS YP_266204.1 71083485 3516774 760746..761552 1 NC_007205.1 inositol monophosphatase family; inositol monophosphatase 761552 3516774 SAR11_0783 Candidatus Pelagibacter ubique HTCC1062 inositol monophosphatase YP_266204.1 760746 D 335992 CDS YP_266205.1 71083486 3516775 761553..762113 1 NC_007205.1 hypothetical protein 762113 3516775 SAR11_0784 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266205.1 761553 D 335992 CDS YP_266206.1 71083487 3516776 762333..762677 1 NC_007205.1 hypothetical protein 762677 3516776 SAR11_0785 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266206.1 762333 D 335992 CDS YP_266207.1 71083488 3516777 complement(763013..763345) 1 NC_007205.1 quaternary ammonium compounds; multidrug resistance protein 763345 qacH 3516777 qacH Candidatus Pelagibacter ubique HTCC1062 multidrug resistance protein YP_266207.1 763013 R 335992 CDS YP_266208.1 71083489 3516778 complement(763345..763680) 1 NC_007205.1 quaternary ammonium compound-resistance protein qacH 763680 qacH2 3516778 qacH2 Candidatus Pelagibacter ubique HTCC1062 quaternary ammonium compound-resistance protein qacH YP_266208.1 763345 R 335992 CDS YP_266209.1 71083490 3516779 complement(763730..763939) 1 NC_007205.1 transmembrane protein 763939 3516779 SAR11_0788 Candidatus Pelagibacter ubique HTCC1062 transmembrane protein YP_266209.1 763730 R 335992 CDS YP_266210.1 71083491 3516780 complement(763955..764959) 1 NC_007205.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 764959 cysK 3516780 cysK Candidatus Pelagibacter ubique HTCC1062 cysteine synthase A YP_266210.1 763955 R 335992 CDS YP_266211.1 71083492 3516781 complement(764959..765537) 1 NC_007205.1 serine O-acetyltransferase 765537 cysE 3516781 cysE Candidatus Pelagibacter ubique HTCC1062 serine O-acetyltransferase YP_266211.1 764959 R 335992 CDS YP_266212.1 71083493 3516782 765612..766022 1 NC_007205.1 ring-cleaving dioxygenase 766022 3516782 SAR11_0791 Candidatus Pelagibacter ubique HTCC1062 ring-cleaving dioxygenase YP_266212.1 765612 D 335992 CDS YP_266213.1 71083494 3516783 766031..766501 1 NC_007205.1 hypothetical protein 766501 3516783 SAR11_0792 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266213.1 766031 D 335992 CDS YP_266214.1 71083495 3516784 766600..767475 1 NC_007205.1 hypothetical protein 767475 3516784 SAR11_0793 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266214.1 766600 D 335992 CDS YP_266215.2 304570558 3516785 767480..768199 1 NC_007205.1 hypothetical protein 768199 3516785 SAR11_0794 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266215.2 767480 D 335992 CDS YP_266216.1 71083497 3516786 768206..769159 1 NC_007205.1 hypothetical protein 769159 3516786 SAR11_0795 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266216.1 768206 D 335992 CDS YP_266217.1 71083498 3516787 769202..770683 1 NC_007205.1 aldehyde dehydrogenase 770683 aldH 3516787 aldH Candidatus Pelagibacter ubique HTCC1062 aldehyde dehydrogenase YP_266217.1 769202 D 335992 CDS YP_266218.1 71083499 3516788 770785..771747 1 NC_007205.1 periplasmic components; similar to COG2113: ABC-type proline/glycine betaine transport systems; hypothetical protein 771747 proX 3516788 proX Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266218.1 770785 D 335992 CDS YP_266219.1 71083500 3516789 771830..772879 1 NC_007205.1 glycine betaine/L-proline transport ATP-binding protein 772879 proV 3516789 proV Candidatus Pelagibacter ubique HTCC1062 glycine betaine/L-proline transport ATP-binding protein YP_266219.1 771830 D 335992 CDS YP_266220.1 71083501 3516713 772872..774377 1 NC_007205.1 glycine betaine/L-proline transport system permease protein 774377 proW 3516713 proW Candidatus Pelagibacter ubique HTCC1062 glycine betaine/L-proline transport system permease protein YP_266220.1 772872 D 335992 CDS YP_266221.1 71083502 3516714 774387..774992 1 NC_007205.1 lysine efflux pump 774992 yggA 3516714 yggA Candidatus Pelagibacter ubique HTCC1062 lysine efflux pump YP_266221.1 774387 D 335992 CDS YP_266222.1 71083503 3516715 complement(774994..776280) 1 NC_007205.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 776280 hisD 3516715 hisD Candidatus Pelagibacter ubique HTCC1062 histidinol dehydrogenase YP_266222.1 774994 R 335992 CDS YP_266223.1 71083504 3516716 complement(776343..777149) 1 NC_007205.1 phosphate acetyltransferase (phosphotransacetylase) 777149 pta 3516716 pta Candidatus Pelagibacter ubique HTCC1062 phosphate acetyltransferase (phosphotransacetylase) YP_266223.1 776343 R 335992 CDS YP_266224.1 71083505 3516717 777304..778446 1 NC_007205.1 epoxide hydrolase 778446 ephX1 3516717 ephX1 Candidatus Pelagibacter ubique HTCC1062 epoxide hydrolase YP_266224.1 777304 D 335992 CDS YP_266225.1 71083506 3516718 complement(778447..779457) 1 NC_007205.1 malate/L-sulfolactate dehydrogenase multifunction enzyme 779457 comC 3516718 comC Candidatus Pelagibacter ubique HTCC1062 malate/L-sulfolactate dehydrogenase multifunction enzyme YP_266225.1 778447 R 335992 CDS YP_266226.1 71083507 3516719 complement(779476..781389) 1 NC_007205.1 taurine uptake ABC transporter permease protein 781389 tauC 3516719 tauC Candidatus Pelagibacter ubique HTCC1062 taurine uptake ABC transporter permease protein YP_266226.1 779476 R 335992 CDS YP_266227.1 71083508 3516720 complement(781391..782188) 1 NC_007205.1 taurin uptake ABC transporter ATP-binding protein 782188 tauB 3516720 tauB Candidatus Pelagibacter ubique HTCC1062 taurin uptake ABC transporter ATP-binding protein YP_266227.1 781391 R 335992 CDS YP_266228.1 71083509 3516721 complement(782276..783217) 1 NC_007205.1 taurine transport system periplasmic protein 783217 tauA 3516721 tauA Candidatus Pelagibacter ubique HTCC1062 taurine transport system periplasmic protein YP_266228.1 782276 R 335992 CDS YP_266229.1 71083510 3516722 783435..784781 1 NC_007205.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 784781 bioA 3516722 bioA Candidatus Pelagibacter ubique HTCC1062 beta alanine--pyruvate transaminase YP_266229.1 783435 D 335992 CDS YP_266230.1 71083511 3516723 784825..785937 1 NC_007205.1 alanine dehydrogenase 785937 ald 3516723 ald Candidatus Pelagibacter ubique HTCC1062 alanine dehydrogenase YP_266230.1 784825 D 335992 CDS YP_266231.1 71083512 3516724 785951..786466 1 NC_007205.1 hypothetical protein 786466 3516724 SAR11_0810 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266231.1 785951 D 335992 CDS YP_266232.1 71083513 3516725 786575..788023 1 NC_007205.1 possible urea transporter (Pfam); sodium/solute transporter family 788023 3516725 SAR11_0811 Candidatus Pelagibacter ubique HTCC1062 sodium/solute transporter family YP_266232.1 786575 D 335992 CDS YP_266233.1 71083514 3516726 788073..789008 1 NC_007205.1 ABC transporter ATP-binding protein 789008 yadG 3516726 yadG Candidatus Pelagibacter ubique HTCC1062 ABC transporter ATP-binding protein YP_266233.1 788073 D 335992 CDS YP_266234.1 71083515 3516727 788998..789765 1 NC_007205.1 ABC-2-type transport system; permease 789765 yadH 3516727 yadH Candidatus Pelagibacter ubique HTCC1062 permease YP_266234.1 788998 D 335992 CDS YP_266235.1 71083516 3516728 complement(789794..790177) 1 NC_007205.1 similar to prokaryotic and plant carbonic anhydrase; carbonic anhydrase 790177 cynT 3516728 cynT Candidatus Pelagibacter ubique HTCC1062 carbonic anhydrase YP_266235.1 789794 R 335992 CDS YP_266236.1 71083517 3516729 790317..791450 1 NC_007205.1 zinc metalloprotease 791450 3516729 SAR11_0816 Candidatus Pelagibacter ubique HTCC1062 zinc metalloprotease YP_266236.1 790317 D 335992 CDS YP_266237.1 71083518 3516730 791591..791866 1 NC_007205.1 similar to Escherichia coli hupA and hupB; non-specific DNA-binding protein HBsu 791866 hupA 3516730 hupA Candidatus Pelagibacter ubique HTCC1062 non-specific DNA-binding protein HBsu YP_266237.1 791591 D 335992 CDS YP_266238.1 71083519 3516731 792013..793314 1 NC_007205.1 ammonium transporter 793314 amtB 3516731 amtB Candidatus Pelagibacter ubique HTCC1062 ammonium transporter YP_266238.1 792013 D 335992 CDS YP_266239.1 71083520 3516732 complement(793367..793834) 1 NC_007205.1 bacterioferritin comigratory protein 793834 bcp 3516732 bcp Candidatus Pelagibacter ubique HTCC1062 bacterioferritin comigratory protein YP_266239.1 793367 R 335992 CDS YP_266240.1 71083521 3516694 complement(793837..794856) 1 NC_007205.1 rhamnosyltransferase 794856 wbbA 3516694 wbbA Candidatus Pelagibacter ubique HTCC1062 rhamnosyltransferase YP_266240.1 793837 R 335992 CDS YP_266241.1 71083522 3516695 794910..795293 1 NC_007205.1 sulfide dehydrogenase 795293 3516695 SAR11_0821 Candidatus Pelagibacter ubique HTCC1062 sulfide dehydrogenase YP_266241.1 794910 D 335992 CDS YP_266242.1 71083523 3516696 complement(795290..795874) 1 NC_007205.1 2-hydroxychromene-2-carboxylate isomerase 795874 dsbA 3516696 dsbA Candidatus Pelagibacter ubique HTCC1062 2-hydroxychromene-2-carboxylate isomerase YP_266242.1 795290 R 335992 CDS YP_266243.1 71083524 3516697 complement(795867..796340) 1 NC_007205.1 hypothetical protein 796340 3516697 SAR11_0823 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266243.1 795867 R 335992 CDS YP_266244.1 71083525 3516698 796378..796932 1 NC_007205.1 regulatory protein 796932 recX 3516698 recX Candidatus Pelagibacter ubique HTCC1062 regulatory protein YP_266244.1 796378 D 335992 CDS YP_266245.1 71083526 3516699 complement(796924..797070) 1 NC_007205.1 transmembrane protein 797070 3516699 SAR11_0825 Candidatus Pelagibacter ubique HTCC1062 transmembrane protein YP_266245.1 796924 R 335992 CDS YP_266246.1 71083527 3516700 complement(797070..797840) 1 NC_007205.1 cysQ protein 797840 cysQ 3516700 cysQ Candidatus Pelagibacter ubique HTCC1062 cysQ protein YP_266246.1 797070 R 335992 CDS YP_266247.1 71083528 3516701 complement(797837..798043) 1 NC_007205.1 hypothetical protein 798043 3516701 SAR11_0827 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266247.1 797837 R 335992 CDS YP_266248.1 71083529 3516702 798049..799164 1 NC_007205.1 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 799164 trmU 3516702 trmU Candidatus Pelagibacter ubique HTCC1062 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_266248.1 798049 D 335992 CDS YP_266249.2 304570559 3516703 799350..800525 1 NC_007205.1 cystathionine beta-lyase 800525 metC 3516703 metC Candidatus Pelagibacter ubique HTCC1062 cystathionine beta-lyase YP_266249.2 799350 D 335992 CDS YP_266250.1 71083531 3516704 800522..801742 1 NC_007205.1 major facilitator transporter 801742 3516704 SAR11_0830 Candidatus Pelagibacter ubique HTCC1062 major facilitator transporter YP_266250.1 800522 D 335992 CDS YP_266251.1 71083532 3516705 801746..802909 1 NC_007205.1 para-aminobenzoate synthase component I 802909 pabB 3516705 pabB Candidatus Pelagibacter ubique HTCC1062 para-aminobenzoate synthase component I YP_266251.1 801746 D 335992 CDS YP_266252.1 71083533 3516706 802906..803463 1 NC_007205.1 anthranilate synthase component II (glutamine amido-transferase) 803463 trpG 3516706 trpG Candidatus Pelagibacter ubique HTCC1062 anthranilate synthase component II (glutamine amido-transferase) YP_266252.1 802906 D 335992 CDS YP_266253.1 71083534 3516707 803522..804196 1 NC_007205.1 class IV; aminotransferase 804196 3516707 SAR11_0833 Candidatus Pelagibacter ubique HTCC1062 aminotransferase YP_266253.1 803522 D 335992 CDS YP_266254.1 71083535 3516708 804165..804599 1 NC_007205.1 diadenosine tetraphosphate hydrolase 804599 apaG 3516708 apaG Candidatus Pelagibacter ubique HTCC1062 diadenosine tetraphosphate hydrolase YP_266254.1 804165 D 335992 CDS YP_266255.1 71083536 3516709 804704..805498 1 NC_007205.1 adenylylsulfate reductase membrane anchor 805498 aprM 3516709 aprM Candidatus Pelagibacter ubique HTCC1062 adenylylsulfate reductase membrane anchor YP_266255.1 804704 D 335992 CDS YP_266256.1 71083537 3516710 805519..805989 1 NC_007205.1 adenylyl-sulfate reductase chain B 805989 aprB 3516710 aprB Candidatus Pelagibacter ubique HTCC1062 adenylyl-sulfate reductase chain B YP_266256.1 805519 D 335992 CDS YP_266257.1 71083538 3516711 805989..807848 1 NC_007205.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha 807848 aprA 3516711 aprA Candidatus Pelagibacter ubique HTCC1062 adenylylsulfate reductase subunit alpha YP_266257.1 805989 D 335992 CDS YP_266258.1 71083539 3516712 807867..808217 1 NC_007205.1 hypothetical protein 808217 3516712 SAR11_0838 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266258.1 807867 D 335992 CDS YP_266259.1 71083540 3516674 808285..808419 1 NC_007205.1 transmembrane protein 808419 3516674 SAR11_0839 Candidatus Pelagibacter ubique HTCC1062 transmembrane protein YP_266259.1 808285 D 335992 CDS YP_266260.1 71083541 3516675 808448..809530 1 NC_007205.1 transmembrane permease 809530 3516675 SAR11_0840 Candidatus Pelagibacter ubique HTCC1062 transmembrane permease YP_266260.1 808448 D 335992 CDS YP_266261.1 71083542 3516676 complement(809527..810600) 1 NC_007205.1 hypothetical protein 810600 yeiH 3516676 yeiH Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266261.1 809527 R 335992 CDS YP_266262.1 71083543 3516677 complement(810619..811785) 1 NC_007205.1 galactarate dehydratase 811785 garD 3516677 garD Candidatus Pelagibacter ubique HTCC1062 galactarate dehydratase YP_266262.1 810619 R 335992 CDS YP_266263.1 71083544 3516678 complement(811791..812075) 1 NC_007205.1 D-galactarate dehydratase/Altronate 812075 3516678 SAR11_0843 Candidatus Pelagibacter ubique HTCC1062 D-galactarate dehydratase/Altronate YP_266263.1 811791 R 335992 CDS YP_266264.1 71083545 3516679 812187..813971 1 NC_007205.1 catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; sulfoacetaldehyde acetyltransferase 813971 3516679 SAR11_0844 Candidatus Pelagibacter ubique HTCC1062 sulfoacetaldehyde acetyltransferase YP_266264.1 812187 D 335992 CDS YP_266265.1 71083546 3516680 814011..815612 1 NC_007205.1 steroid monooxygenase 815612 smo 3516680 smo Candidatus Pelagibacter ubique HTCC1062 steroid monooxygenase YP_266265.1 814011 D 335992 CDS YP_266266.1 71083547 3516681 815628..816377 1 NC_007205.1 unknown specificity; short chain dehydrogenase 816377 3516681 SAR11_0846 Candidatus Pelagibacter ubique HTCC1062 short chain dehydrogenase YP_266266.1 815628 D 335992 CDS YP_266267.1 71083548 3516682 816382..817686 1 NC_007205.1 glycine/D-amino acid oxidase 817686 3516682 SAR11_0847 Candidatus Pelagibacter ubique HTCC1062 glycine/D-amino acid oxidase YP_266267.1 816382 D 335992 CDS YP_266268.1 71083549 3516683 complement(817687..820215) 1 NC_007205.1 permease involved in lysophospholipase L1 biosynthesis; ABC transporter 820215 3516683 SAR11_0848 Candidatus Pelagibacter ubique HTCC1062 ABC transporter YP_266268.1 817687 R 335992 CDS YP_266269.1 71083550 3516684 complement(820208..820873) 1 NC_007205.1 ABC transporter ATP-binding protein 820873 3516684 SAR11_0850 Candidatus Pelagibacter ubique HTCC1062 ABC transporter ATP-binding protein YP_266269.1 820208 R 335992 CDS YP_266270.1 71083551 3516685 820872..821486 1 NC_007205.1 arylesterase 821486 3516685 SAR11_0851 Candidatus Pelagibacter ubique HTCC1062 arylesterase YP_266270.1 820872 D 335992 CDS YP_266271.1 71083552 3516686 821501..822793 1 NC_007205.1 homoserine dehydrogenase 822793 3516686 SAR11_0852 Candidatus Pelagibacter ubique HTCC1062 homoserine dehydrogenase YP_266271.1 821501 D 335992 CDS YP_266272.1 71083553 3516687 complement(822790..823941) 1 NC_007205.1 X-Pro dipeptidase 823941 3516687 SAR11_0853 Candidatus Pelagibacter ubique HTCC1062 X-Pro dipeptidase YP_266272.1 822790 R 335992 CDS YP_266273.1 71083554 3516688 complement(824061..824837) 1 NC_007205.1 fumarylacetoacetate (FAA) hydrolase family protein 824837 3516688 SAR11_0854 Candidatus Pelagibacter ubique HTCC1062 fumarylacetoacetate (FAA) hydrolase family protein YP_266273.1 824061 R 335992 CDS YP_266274.1 71083555 3516689 complement(824837..825637) 1 NC_007205.1 M23/M37 family; peptidase 825637 3516689 SAR11_0855 Candidatus Pelagibacter ubique HTCC1062 peptidase YP_266274.1 824837 R 335992 CDS YP_266275.1 71083556 3516690 complement(825622..826380) 1 NC_007205.1 unknown specificity; short chain dehydrogenase 826380 3516690 SAR11_0856 Candidatus Pelagibacter ubique HTCC1062 short chain dehydrogenase YP_266275.1 825622 R 335992 CDS YP_266276.1 71083557 3516691 complement(826381..826971) 1 NC_007205.1 TerC family integral membrane protein 826971 3516691 SAR11_0857 Candidatus Pelagibacter ubique HTCC1062 TerC family integral membrane protein YP_266276.1 826381 R 335992 CDS YP_266277.1 71083558 3516692 complement(826971..828566) 1 NC_007205.1 alcohol dehydrogenase 828566 betA 3516692 betA Candidatus Pelagibacter ubique HTCC1062 alcohol dehydrogenase YP_266277.1 826971 R 335992 CDS YP_266278.1 71083559 3516693 828655..829401 1 NC_007205.1 contains rhodanese domain; peptidyl-prolyl isomerase 829401 fbp 3516693 fbp Candidatus Pelagibacter ubique HTCC1062 peptidyl-prolyl isomerase YP_266278.1 828655 D 335992 CDS YP_266279.1 71083560 3517019 complement(829409..829825) 1 NC_007205.1 transcriptional regulator 829825 3517019 SAR11_0860 Candidatus Pelagibacter ubique HTCC1062 transcriptional regulator YP_266279.1 829409 R 335992 CDS YP_266280.1 71083561 3517020 829950..830726 1 NC_007205.1 unknown specificity; short chain dehydrogenase 830726 3517020 SAR11_0861 Candidatus Pelagibacter ubique HTCC1062 short chain dehydrogenase YP_266280.1 829950 D 335992 CDS YP_266281.1 71083562 3517021 830726..832246 1 NC_007205.1 aldehyde dehydrogenase 832246 3517021 SAR11_0862 Candidatus Pelagibacter ubique HTCC1062 aldehyde dehydrogenase YP_266281.1 830726 D 335992 CDS YP_266282.1 71083563 3517022 832239..833165 1 NC_007205.1 3-hydroxyisobutyrate dehydrogenase family; MmsB-like protein 833165 3517022 SAR11_0863 Candidatus Pelagibacter ubique HTCC1062 MmsB-like protein YP_266282.1 832239 D 335992 CDS YP_266283.1 71083564 3517023 833343..834434 1 NC_007205.1 similar to COG4663: TRAP-type mannitol/chloroaromatic compound transport system; hypothetical protein 834434 3517023 SAR11_0864 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266283.1 833343 D 335992 CDS YP_266284.2 304570560 3517024 834523..835182 1 NC_007205.1 small permease component; TRAP-type mannitol/chloroaromatic compound transport system 835182 3517024 SAR11_0865 Candidatus Pelagibacter ubique HTCC1062 TRAP-type mannitol/chloroaromatic compound transport system YP_266284.2 834523 D 335992 CDS YP_266285.1 71083566 3517025 835182..836507 1 NC_007205.1 large chain; mannitol transporter 836507 3517025 SAR11_0866 Candidatus Pelagibacter ubique HTCC1062 mannitol transporter YP_266285.1 835182 D 335992 CDS YP_266286.1 71083567 3517026 complement(836512..837366) 1 NC_007205.1 transporter 837366 yyaM 3517026 yyaM Candidatus Pelagibacter ubique HTCC1062 transporter YP_266286.1 836512 R 335992 CDS YP_266287.1 71083568 3517027 837474..838931 1 NC_007205.1 uracil, thiamine, allantoin; permease for cytosine/purines 838931 pucI 3517027 pucI Candidatus Pelagibacter ubique HTCC1062 permease for cytosine/purines YP_266287.1 837474 D 335992 CDS YP_266288.1 71083569 3517028 838936..839682 1 NC_007205.1 unknown specificity; short chain dehydrogenase 839682 3517028 SAR11_0869 Candidatus Pelagibacter ubique HTCC1062 short chain dehydrogenase YP_266288.1 838936 D 335992 CDS YP_266289.1 71083570 3517029 839935..840525 1 NC_007205.1 hypothetical protein 840525 3517029 SAR11_0870 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266289.1 839935 D 335992 CDS YP_266290.1 71083571 3517030 complement(840528..840665) 1 NC_007205.1 transmembrane protein 840665 3517030 SAR11_0871 Candidatus Pelagibacter ubique HTCC1062 transmembrane protein YP_266290.1 840528 R 335992 CDS YP_266291.1 71083572 3517031 840723..841148 1 NC_007205.1 4-hydroxybenzoyl-CoA thioesterase 841148 ybgC 3517031 ybgC Candidatus Pelagibacter ubique HTCC1062 4-hydroxybenzoyl-CoA thioesterase YP_266291.1 840723 D 335992 CDS YP_266292.1 71083573 3517032 complement(841141..841815) 1 NC_007205.1 uracil-DNA glycosylase 841815 ung 3517032 ung Candidatus Pelagibacter ubique HTCC1062 uracil-DNA glycosylase YP_266292.1 841141 R 335992 CDS YP_266293.1 71083574 3517033 841818..842369 1 NC_007205.1 phosphoglycerate mutase family protein 842369 3517033 SAR11_0874 Candidatus Pelagibacter ubique HTCC1062 phosphoglycerate mutase family protein YP_266293.1 841818 D 335992 CDS YP_266294.1 71083575 3517034 842388..842525 1 NC_007205.1 hypothetical protein 842525 3517034 SAR11_0875 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266294.1 842388 D 335992 CDS YP_266295.1 71083576 3517035 complement(842603..842779) 1 NC_007205.1 transmembrane protein 842779 3517035 SAR11_0876 Candidatus Pelagibacter ubique HTCC1062 transmembrane protein YP_266295.1 842603 R 335992 CDS YP_266296.1 71083577 3517036 complement(842772..843023) 1 NC_007205.1 hypothetical protein 843023 3517036 SAR11_0877 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266296.1 842772 R 335992 CDS YP_266297.1 71083578 3517003 843226..844659 1 NC_007205.1 active site peptidylprolyl isomerase; trigger factor 844659 tig 3517003 tig Candidatus Pelagibacter ubique HTCC1062 trigger factor YP_266297.1 843226 D 335992 CDS YP_266298.1 71083579 3517004 844691..845302 1 NC_007205.1 ATP-dependent Clp protease proteolytic subunit 845302 clpP 3517004 clpP Candidatus Pelagibacter ubique HTCC1062 ATP-dependent Clp protease proteolytic subunit YP_266298.1 844691 D 335992 CDS YP_266299.1 71083580 3517005 845394..846662 1 NC_007205.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 846662 clpX 3517005 clpX Candidatus Pelagibacter ubique HTCC1062 ATP-dependent protease ATP-binding subunit ClpX YP_266299.1 845394 D 335992 CDS YP_266300.1 71083581 3517006 846722..849106 1 NC_007205.1 Lon; ATP-dependent protease La 849106 lon 3517006 lon Candidatus Pelagibacter ubique HTCC1062 ATP-dependent protease La YP_266300.1 846722 D 335992 CDS YP_266301.1 71083582 3517009 849410..849778 1 NC_007205.1 NADH dehydrogenase I subunit A 849778 nuoA 3517009 nuoA Candidatus Pelagibacter ubique HTCC1062 NADH dehydrogenase I subunit A YP_266301.1 849410 D 335992 CDS YP_266302.1 71083583 3517010 849790..850311 1 NC_007205.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 850311 nuoB 3517010 nuoB Candidatus Pelagibacter ubique HTCC1062 NADH dehydrogenase subunit B YP_266302.1 849790 D 335992 CDS YP_266303.1 71083584 3517011 850317..850925 1 NC_007205.1 NADH dehydrogenase I subunit C 850925 nuoC 3517011 nuoC Candidatus Pelagibacter ubique HTCC1062 NADH dehydrogenase I subunit C YP_266303.1 850317 D 335992 CDS YP_266304.1 71083585 3517012 850909..852084 1 NC_007205.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 852084 nuoD 3517012 nuoD Candidatus Pelagibacter ubique HTCC1062 NADH dehydrogenase subunit D YP_266304.1 850909 D 335992 CDS YP_266305.1 71083586 3517013 852084..852692 1 NC_007205.1 NADH dehydrogenase I subunit E 852692 nuoE 3517013 nuoE Candidatus Pelagibacter ubique HTCC1062 NADH dehydrogenase I subunit E YP_266305.1 852084 D 335992 CDS YP_266306.1 71083587 3517014 852685..854016 1 NC_007205.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 854016 nuoF 3517014 nuoF Candidatus Pelagibacter ubique HTCC1062 NADH dehydrogenase I subunit F YP_266306.1 852685 D 335992 CDS YP_266307.1 71083588 3517015 854009..856048 1 NC_007205.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 856048 nuoG 3517015 nuoG Candidatus Pelagibacter ubique HTCC1062 NADH dehydrogenase subunit G YP_266307.1 854009 D 335992 CDS YP_266308.1 71083589 3517016 856052..857050 1 NC_007205.1 NADH dehydrogenase I subunit H 857050 nuoH 3517016 nuoH Candidatus Pelagibacter ubique HTCC1062 NADH dehydrogenase I subunit H YP_266308.1 856052 D 335992 CDS YP_266309.1 71083590 3517017 857053..857538 1 NC_007205.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 857538 nuoI 3517017 nuoI Candidatus Pelagibacter ubique HTCC1062 NADH dehydrogenase subunit I YP_266309.1 857053 D 335992 CDS YP_266310.1 71083591 3517018 857541..858173 1 NC_007205.1 NADH dehydrogenase I subunit J 858173 nuoJ 3517018 nuoJ Candidatus Pelagibacter ubique HTCC1062 NADH dehydrogenase I subunit J YP_266310.1 857541 D 335992 CDS YP_266311.1 71083592 3516983 858166..858477 1 NC_007205.1 NADH dehydrogenase I subunit K 858477 nuoK 3516983 nuoK Candidatus Pelagibacter ubique HTCC1062 NADH dehydrogenase I subunit K YP_266311.1 858166 D 335992 CDS YP_266312.1 71083593 3516984 858479..860392 1 NC_007205.1 NADH dehydrogenase I subunit L 860392 nuoL 3516984 nuoL Candidatus Pelagibacter ubique HTCC1062 NADH dehydrogenase I subunit L YP_266312.1 858479 D 335992 CDS YP_266313.1 71083594 3516985 860392..861885 1 NC_007205.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 861885 nuoM 3516985 nuoM Candidatus Pelagibacter ubique HTCC1062 NADH dehydrogenase subunit M YP_266313.1 860392 D 335992 CDS YP_266314.1 71083595 3516986 861885..863300 1 NC_007205.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 863300 nuoN 3516986 nuoN Candidatus Pelagibacter ubique HTCC1062 NADH dehydrogenase subunit N YP_266314.1 861885 D 335992 CDS YP_266315.1 71083596 3516987 863300..863863 1 NC_007205.1 biotin-protein ligase 863863 birA 3516987 birA Candidatus Pelagibacter ubique HTCC1062 biotin-protein ligase YP_266315.1 863300 D 335992 CDS YP_266316.1 71083597 3516988 863860..864606 1 NC_007205.1 Bordetella pertussis Bvg accessory factor; Bvg accessory factor 864606 yacB 3516988 yacB Candidatus Pelagibacter ubique HTCC1062 Bvg accessory factor YP_266316.1 863860 D 335992 CDS YP_266317.1 71083598 3516989 864609..866264 1 NC_007205.1 metallo-beta-lactamase family protein 866264 3516989 SAR11_0900 Candidatus Pelagibacter ubique HTCC1062 metallo-beta-lactamase family protein YP_266317.1 864609 D 335992 CDS YP_266318.1 71083599 3516990 866265..866510 1 NC_007205.1 hypothetical protein 866510 3516990 SAR11_0901 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266318.1 866265 D 335992 CDS YP_266319.1 71083600 3516991 866512..867846 1 NC_007205.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 867846 proS 3516991 proS Candidatus Pelagibacter ubique HTCC1062 prolyl-tRNA synthetase YP_266319.1 866512 D 335992 CDS YP_266320.1 71083601 3516992 867843..869075 1 NC_007205.1 membrane spanning protein; ABC transporter 869075 ycfU 3516992 ycfU Candidatus Pelagibacter ubique HTCC1062 ABC transporter YP_266320.1 867843 D 335992 CDS YP_266321.1 71083602 3516993 869068..869754 1 NC_007205.1 ABC transporter ATP-binding protein 869754 ycfV 3516993 ycfV Candidatus Pelagibacter ubique HTCC1062 ABC transporter ATP-binding protein YP_266321.1 869068 D 335992 CDS YP_266322.1 71083603 3516994 869738..873154 1 NC_007205.1 DNA polymerase III subunit alpha 873154 dnaE 3516994 dnaE Candidatus Pelagibacter ubique HTCC1062 DNA polymerase III subunit alpha YP_266322.1 869738 D 335992 CDS YP_266323.1 71083604 3516995 873284..874105 1 NC_007205.1 30S ribosomal protein S2 874105 rpsB 3516995 rpsB Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S2 YP_266323.1 873284 D 335992 CDS YP_266324.1 71083605 3516996 874107..874958 1 NC_007205.1 protein translation elongation factor Ts (EF-Ts) 874958 tsf 3516996 tsf Candidatus Pelagibacter ubique HTCC1062 protein translation elongation factor Ts (EF-Ts) YP_266324.1 874107 D 335992 CDS YP_266325.1 71083606 3516997 874959..875510 1 NC_007205.1 ribosome recycling factor 875510 rrf 3516997 rrf Candidatus Pelagibacter ubique HTCC1062 ribosome recycling factor YP_266325.1 874959 D 335992 CDS YP_266326.1 71083607 3516998 875507..876184 1 NC_007205.1 UDP diphosphate synthase 876184 3516998 SAR11_0910 Candidatus Pelagibacter ubique HTCC1062 UDP diphosphate synthase YP_266326.1 875507 D 335992 CDS YP_266327.1 71083608 3516999 876184..876846 1 NC_007205.1 phosphatidate cytidylyltransferase 876846 cdsA 3516999 cdsA Candidatus Pelagibacter ubique HTCC1062 phosphatidate cytidylyltransferase YP_266327.1 876184 D 335992 CDS YP_266328.1 71083609 3517000 876848..878014 1 NC_007205.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 878014 yaeM 3517000 yaeM Candidatus Pelagibacter ubique HTCC1062 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_266328.1 876848 D 335992 CDS YP_266329.1 71083610 3517001 878022..880259 1 NC_007205.1 hypothetical protein 880259 omp1 3517001 omp1 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266329.1 878022 D 335992 CDS YP_266330.1 71083611 3517002 880259..880783 1 NC_007205.1 hypothetical protein 880783 ompH 3517002 ompH Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266330.1 880259 D 335992 CDS YP_266331.1 71083612 3516964 880790..881230 1 NC_007205.1 (3R)-hydroxymyristoyl-ACP dehydratase 881230 fabZ 3516964 fabZ Candidatus Pelagibacter ubique HTCC1062 (3R)-hydroxymyristoyl-ACP dehydratase YP_266331.1 880790 D 335992 CDS YP_266332.1 71083613 3516965 881283..882263 1 NC_007205.1 glucosamine N-acyltransferase 882263 lpxD 3516965 lpxD Candidatus Pelagibacter ubique HTCC1062 glucosamine N-acyltransferase YP_266332.1 881283 D 335992 CDS YP_266333.1 71083614 3516966 882260..883042 1 NC_007205.1 acyl-ACP-UDP-N- acetylglucosamine O-acyltransferase 883042 lpxA 3516966 lpxA Candidatus Pelagibacter ubique HTCC1062 acyl-ACP-UDP-N- acetylglucosamine O-acyltransferase YP_266333.1 882260 D 335992 CDS YP_266334.1 71083615 3516967 883044..883829 1 NC_007205.1 hypothetical protein 883829 3516967 SAR11_0918 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266334.1 883044 D 335992 CDS YP_266335.1 71083616 3516968 883826..884962 1 NC_007205.1 lipid-A-disaccharide synthase 884962 lpxB 3516968 lpxB Candidatus Pelagibacter ubique HTCC1062 lipid-A-disaccharide synthase YP_266335.1 883826 D 335992 CDS YP_266336.1 71083617 3516969 complement(884939..886339) 1 NC_007205.1 glutamyl-tRNA synthetase 886339 gltX 3516969 gltX Candidatus Pelagibacter ubique HTCC1062 glutamyl-tRNA synthetase YP_266336.1 884939 R 335992 CDS YP_266337.1 71083618 3516970 complement(886362..887039) 1 NC_007205.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 887039 lexA 3516970 lexA Candidatus Pelagibacter ubique HTCC1062 LexA repressor YP_266337.1 886362 R 335992 CDS YP_266338.1 71083619 3516971 complement(887128..887919) 1 NC_007205.1 indole-3-glycerol phosphate synthase 887919 trpC 3516971 trpC Candidatus Pelagibacter ubique HTCC1062 indole-3-glycerol phosphate synthase YP_266338.1 887128 R 335992 CDS YP_266339.1 71083620 3516972 complement(887912..888904) 1 NC_007205.1 anthranilate phosphoribosyltransferase 888904 trpD 3516972 trpD Candidatus Pelagibacter ubique HTCC1062 anthranilate phosphoribosyltransferase YP_266339.1 887912 R 335992 CDS YP_266340.1 71083621 3516973 complement(888901..889476) 1 NC_007205.1 anthranilate synthase component II 889476 trpGD 3516973 trpGD Candidatus Pelagibacter ubique HTCC1062 anthranilate synthase component II YP_266340.1 888901 R 335992 CDS YP_266341.1 71083622 3516974 complement(889476..890930) 1 NC_007205.1 anthranilate synthase component I-like protein 890930 trpE 3516974 trpE Candidatus Pelagibacter ubique HTCC1062 anthranilate synthase component I-like protein YP_266341.1 889476 R 335992 CDS YP_266342.1 71083623 3516975 complement(890930..892351) 1 NC_007205.1 SurA-like protein 892351 3516975 SAR11_0926 Candidatus Pelagibacter ubique HTCC1062 SurA-like protein YP_266342.1 890930 R 335992 CDS YP_266343.1 71083624 3516976 892423..893148 1 NC_007205.1 triosephosphate isomerase 893148 tpiA 3516976 tpiA Candidatus Pelagibacter ubique HTCC1062 triosephosphate isomerase YP_266343.1 892423 D 335992 CDS YP_266344.1 71083625 3516977 893154..893453 1 NC_007205.1 preprotein translocase subunit SecG 893453 secG 3516977 secG Candidatus Pelagibacter ubique HTCC1062 preprotein translocase subunit SecG YP_266344.1 893154 D 335992 CDS YP_266345.1 71083626 3516978 893557..895455 1 NC_007205.1 similar to COG1538: Outer membrane protein.; Similar to TolC by Fugue analysis.; hypothetical protein 895455 3516978 SAR11_0929 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266345.1 893557 D 335992 CDS YP_266346.1 71083627 3516979 complement(895457..895702) 1 NC_007205.1 transmembrane protein 895702 3516979 SAR11_0930 Candidatus Pelagibacter ubique HTCC1062 transmembrane protein YP_266346.1 895457 R 335992 CDS YP_266347.1 71084063 3516980 895470..895697 1 NC_007205.1 transmembrane protein 895697 3516980 SAR11_0931 Candidatus Pelagibacter ubique HTCC1062 transmembrane protein YP_266347.1 895470 D 335992 CDS YP_266348.1 71083628 3516981 895754..917707 1 NC_007205.1 VCBS domain, Interpro ID: ipr010221; similar to COG3468: Type V secretory pathway, adhesin AidA; hypothetical protein 917707 3516981 SAR11_0932 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266348.1 895754 D 335992 CDS YP_266349.1 71083629 3516982 917722..918435 1 NC_007205.1 similar to COG0845: Membrane-fusion protein; AcrA-like protein 918435 acrA 3516982 acrA Candidatus Pelagibacter ubique HTCC1062 AcrA-like protein YP_266349.1 917722 D 335992 CDS YP_266350.1 71083630 3516945 918432..919766 1 NC_007205.1 similar to COG0845: Membrane-fusion protein; AcrB-like protein 919766 3516945 SAR11_0934 Candidatus Pelagibacter ubique HTCC1062 AcrB-like protein YP_266350.1 918432 D 335992 CDS YP_266351.1 71083631 3516946 919763..921865 1 NC_007205.1 peptidase M50 921865 3516946 SAR11_0935 Candidatus Pelagibacter ubique HTCC1062 peptidase M50 YP_266351.1 919763 D 335992 CDS YP_266352.1 71083632 3516947 921991..922563 1 NC_007205.1 fimbrial protein pilin 922563 3516947 SAR11_0936 Candidatus Pelagibacter ubique HTCC1062 fimbrial protein pilin YP_266352.1 921991 D 335992 CDS YP_266353.1 71083633 3516948 922651..924267 1 NC_007205.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 924267 pyrG 3516948 pyrG Candidatus Pelagibacter ubique HTCC1062 CTP synthetase YP_266353.1 922651 D 335992 CDS YP_266354.1 71083634 3516949 924264..925088 1 NC_007205.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 925088 kdsA 3516949 kdsA Candidatus Pelagibacter ubique HTCC1062 2-dehydro-3-deoxyphosphooctonate aldolase YP_266354.1 924264 D 335992 CDS YP_266355.1 71083635 3516950 925089..926345 1 NC_007205.1 C-terminal TIM barrel domain; enolase 926345 eno 3516950 eno Candidatus Pelagibacter ubique HTCC1062 enolase YP_266355.1 925089 D 335992 CDS YP_266356.1 71083636 3516951 926345..926647 1 NC_007205.1 septum formation initiator 926647 divIC 3516951 divIC Candidatus Pelagibacter ubique HTCC1062 septum formation initiator YP_266356.1 926345 D 335992 CDS YP_266357.1 71083637 3516952 926637..927563 1 NC_007205.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 927563 lipA 3516952 lipA Candidatus Pelagibacter ubique HTCC1062 lipoyl synthase YP_266357.1 926637 D 335992 CDS YP_266358.1 71083638 3516953 927563..928000 1 NC_007205.1 similar to Atu1441; hypothetical protein 928000 3516953 SAR11_0942 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266358.1 927563 D 335992 CDS YP_266359.1 71083639 3516954 complement(928018..928509) 1 NC_007205.1 competence/damage-inducible protein CinA 928509 cinA 3516954 cinA Candidatus Pelagibacter ubique HTCC1062 competence/damage-inducible protein CinA YP_266359.1 928018 R 335992 CDS YP_266360.1 71083640 3516955 complement(928476..928979) 1 NC_007205.1 phosphatidylglycerophosphatase A 928979 pgpA 3516955 pgpA Candidatus Pelagibacter ubique HTCC1062 phosphatidylglycerophosphatase A YP_266360.1 928476 R 335992 CDS YP_266361.1 71083641 3516956 complement(928972..930087) 1 NC_007205.1 Includes: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; similar to Swiss-Prot Accession Number Q9PM68; IspD/ispF bifunctional enzyme 930087 ispD 3516956 ispD Candidatus Pelagibacter ubique HTCC1062 IspD/ispF bifunctional enzyme YP_266361.1 928972 R 335992 CDS YP_266362.1 71083642 3516957 930121..931902 1 NC_007205.1 nitrogen regulation protein ntrY 931902 ntrY 3516957 ntrY Candidatus Pelagibacter ubique HTCC1062 nitrogen regulation protein ntrY YP_266362.1 930121 D 335992 CDS YP_266363.1 71083643 3516958 931902..933257 1 NC_007205.1 nitrogen assimilation regulatory protein ntrX 933257 ntrX 3516958 ntrX Candidatus Pelagibacter ubique HTCC1062 nitrogen assimilation regulatory protein ntrX YP_266363.1 931902 D 335992 CDS YP_266364.1 71083644 3516959 933258..934649 1 NC_007205.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 934649 trkA 3516959 trkA Candidatus Pelagibacter ubique HTCC1062 potassium transporter peripheral membrane protein YP_266364.1 933258 D 335992 CDS YP_266365.1 71083645 3516960 934654..936063 1 NC_007205.1 TrkH-like cation transport protein 936063 3516960 SAR11_0950 Candidatus Pelagibacter ubique HTCC1062 TrkH-like cation transport protein YP_266365.1 934654 D 335992 CDS YP_266366.1 71083646 3516962 936342..937382 1 NC_007205.1 similar to amino acid binding protein Mesorhizobium loti; ABC transporter 937382 yhdW 3516962 yhdW Candidatus Pelagibacter ubique HTCC1062 ABC transporter YP_266366.1 936342 D 335992 CDS YP_266367.1 71083647 3516963 937448..938593 1 NC_007205.1 similar to permease protein VC1361 Vibrio cholerae (strain N16961); amino acid ABC transporter 938593 yhdX 3516963 yhdX Candidatus Pelagibacter ubique HTCC1062 amino acid ABC transporter YP_266367.1 937448 D 335992 CDS YP_266368.1 71083648 3516561 938593..939873 1 NC_007205.1 amino-acid ABC transporter permease protein yhdY 939873 yhdY 3516561 yhdY Candidatus Pelagibacter ubique HTCC1062 amino-acid ABC transporter permease protein yhdY YP_266368.1 938593 D 335992 CDS YP_266369.1 71083649 3516562 939877..940611 1 NC_007205.1 general L-amino acid transport ATP-binding protein 940611 yhdZ 3516562 yhdZ Candidatus Pelagibacter ubique HTCC1062 general L-amino acid transport ATP-binding protein YP_266369.1 939877 D 335992 CDS YP_266370.1 71083650 3516563 940786..941157 1 NC_007205.1 transcriptional regulator 941157 3516563 SAR11_0958 Candidatus Pelagibacter ubique HTCC1062 transcriptional regulator YP_266370.1 940786 D 335992 CDS YP_266371.1 71083651 3516564 941232..942389 1 NC_007205.1 hypothetical protein 942389 3516564 SAR11_0959 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266371.1 941232 D 335992 CDS YP_266372.1 71083652 3516567 942739..945366 1 NC_007205.1 valine-tRNA ligase 945366 valS 3516567 valS Candidatus Pelagibacter ubique HTCC1062 valine-tRNA ligase YP_266372.1 942739 D 335992 CDS YP_266373.1 71083653 3516568 945366..947084 1 NC_007205.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 947084 ilvD 3516568 ilvD Candidatus Pelagibacter ubique HTCC1062 dihydroxy-acid dehydratase YP_266373.1 945366 D 335992 CDS YP_266374.1 71083654 3516569 947084..948286 1 NC_007205.1 mannose-6-phosphate isomerase 948286 manC 3516569 manC Candidatus Pelagibacter ubique HTCC1062 mannose-6-phosphate isomerase YP_266374.1 947084 D 335992 CDS YP_266375.1 71083655 3516570 complement(948344..948565) 1 NC_007205.1 hypothetical protein 948565 3516570 SAR11_0963 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266375.1 948344 R 335992 CDS YP_266376.1 71083656 3516571 948678..949040 1 NC_007205.1 ferric-uptake regulator 949040 3516571 SAR11_0964 Candidatus Pelagibacter ubique HTCC1062 ferric-uptake regulator YP_266376.1 948678 D 335992 CDS YP_266377.1 71083657 3516572 949040..949438 1 NC_007205.1 hypothetical protein 949438 3516572 SAR11_0965 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266377.1 949040 D 335992 CDS YP_266378.1 71083658 3516573 949453..950451 1 NC_007205.1 oxidoreductase YiaK 950451 yiaK 3516573 yiaK Candidatus Pelagibacter ubique HTCC1062 oxidoreductase YiaK YP_266378.1 949453 D 335992 CDS YP_266379.1 71083659 3516574 complement(950443..951219) 1 NC_007205.1 exodeoxyribonuclease III 951219 xthA 3516574 xthA Candidatus Pelagibacter ubique HTCC1062 exodeoxyribonuclease III YP_266379.1 950443 R 335992 CDS YP_266380.1 71083660 3516575 complement(951219..951536) 1 NC_007205.1 HesB-like domain-containing protein 951536 3516575 SAR11_0968 Candidatus Pelagibacter ubique HTCC1062 HesB-like domain-containing protein YP_266380.1 951219 R 335992 CDS YP_266381.1 71083661 3516576 951587..952702 1 NC_007205.1 dGTPase 952702 dgtP 3516576 dgtP Candidatus Pelagibacter ubique HTCC1062 dGTPase YP_266381.1 951587 D 335992 CDS YP_266382.1 71083662 3516577 952702..954435 1 NC_007205.1 arginine-tRNA ligase 954435 argS 3516577 argS Candidatus Pelagibacter ubique HTCC1062 arginine-tRNA ligase YP_266382.1 952702 D 335992 CDS YP_266383.1 71083663 3517338 954435..954698 1 NC_007205.1 hypothetical protein 954698 3517338 SAR11_0971 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266383.1 954435 D 335992 CDS YP_266384.1 71083664 3517339 954688..955638 1 NC_007205.1 family 3; glycosyl hydrolase 955638 3517339 SAR11_0972 Candidatus Pelagibacter ubique HTCC1062 glycosyl hydrolase YP_266384.1 954688 D 335992 CDS YP_266385.1 71083665 3517340 955647..956387 1 NC_007205.1 segregation and condensation protein a 956387 scpA 3517340 scpA Candidatus Pelagibacter ubique HTCC1062 segregation and condensation protein a YP_266385.1 955647 D 335992 CDS YP_266386.1 71083666 3517341 956384..957085 1 NC_007205.1 segregation and condensation protein b 957085 scpB 3517341 scpB Candidatus Pelagibacter ubique HTCC1062 segregation and condensation protein b YP_266386.1 956384 D 335992 CDS YP_266387.1 71083667 3517342 957128..957328 1 NC_007205.1 twin-arginine translocation protein TatA 957328 tatA 3517342 tatA Candidatus Pelagibacter ubique HTCC1062 twin-arginine translocation protein TatA YP_266387.1 957128 D 335992 CDS YP_266388.1 71083668 3517343 957334..957555 1 NC_007205.1 twin-arginine translocation protein TatB 957555 tatB 3517343 tatB Candidatus Pelagibacter ubique HTCC1062 twin-arginine translocation protein TatB YP_266388.1 957334 D 335992 CDS YP_266389.1 71083669 3517344 957542..958306 1 NC_007205.1 sec-independent protein translocase protein tatC 958306 tatC 3517344 tatC Candidatus Pelagibacter ubique HTCC1062 sec-independent protein translocase protein tatC YP_266389.1 957542 D 335992 CDS YP_266390.1 71083670 3517345 958299..959558 1 NC_007205.1 serine-tRNA ligase 959558 serS 3517345 serS Candidatus Pelagibacter ubique HTCC1062 serine-tRNA ligase YP_266390.1 958299 D 335992 CDS YP_266391.1 71083671 3517346 959612..959896 1 NC_007205.1 hypothetical protein 959896 yajC 3517346 yajC Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266391.1 959612 D 335992 CDS YP_266392.1 71083672 3517347 959909..961462 1 NC_007205.1 protein-export membrane protein SECD 961462 secD 3517347 secD Candidatus Pelagibacter ubique HTCC1062 protein-export membrane protein SECD YP_266392.1 959909 D 335992 CDS YP_266393.1 71083673 3517348 961462..962349 1 NC_007205.1 preprotein translocase subunit SecF 962349 secF 3517348 secF Candidatus Pelagibacter ubique HTCC1062 preprotein translocase subunit SecF YP_266393.1 961462 D 335992 CDS YP_266394.1 71083674 3517349 complement(962352..962945) 1 NC_007205.1 hypothetical protein 962945 3517349 SAR11_0982 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266394.1 962352 R 335992 CDS YP_266395.1 71083675 3517350 complement(962973..965852) 1 NC_007205.1 excinuclease ABC subunit A 965852 uvrA 3517350 uvrA Candidatus Pelagibacter ubique HTCC1062 excinuclease ABC subunit A YP_266395.1 962973 R 335992 CDS YP_266396.1 71083676 3517351 965942..966400 1 NC_007205.1 helix-destabilizing protein; single-strand binding protein (ssb) 966400 ssb 3517351 ssb Candidatus Pelagibacter ubique HTCC1062 single-strand binding protein (ssb) YP_266396.1 965942 D 335992 CDS YP_266397.1 71083677 3517352 966406..968955 1 NC_007205.1 DNA gyrase subunit A 968955 gyrA 3517352 gyrA Candidatus Pelagibacter ubique HTCC1062 DNA gyrase subunit A YP_266397.1 966406 D 335992 CDS YP_266398.1 71083678 3517353 968955..969449 1 NC_007205.1 pantetheine-phosphate adenylyltransferase 969449 kdtB 3517353 kdtB Candidatus Pelagibacter ubique HTCC1062 pantetheine-phosphate adenylyltransferase YP_266398.1 968955 D 335992 CDS YP_266399.2 304570561 3517354 969442..969996 1 NC_007205.1 peptidyl-prolyl isomerase 969996 ppiB 3517354 ppiB Candidatus Pelagibacter ubique HTCC1062 peptidyl-prolyl isomerase YP_266399.2 969442 D 335992 CDS YP_266400.1 71083680 3517355 970015..971127 1 NC_007205.1 queuine tRNA-ribosyltransferase 971127 tgt 3517355 tgt Candidatus Pelagibacter ubique HTCC1062 queuine tRNA-ribosyltransferase YP_266400.1 970015 D 335992 CDS YP_266401.1 71083681 3517356 complement(971129..971263) 1 NC_007205.1 hypothetical protein 971263 3517356 SAR11_0989 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266401.1 971129 R 335992 CDS YP_266402.1 71083682 3517893 complement(971424..972200) 1 NC_007205.1 M48 family peptidase 972200 3517893 SAR11_0991 Candidatus Pelagibacter ubique HTCC1062 M48 family peptidase YP_266402.1 971424 R 335992 CDS YP_266403.1 71083683 3517894 972375..972989 1 NC_007205.1 hypothetical protein 972989 3517894 SAR11_0992 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266403.1 972375 D 335992 CDS YP_266404.1 71083684 3517895 complement(972986..975037) 1 NC_007205.1 ATP-dependent DNA helicase RecG 975037 recG 3517895 recG Candidatus Pelagibacter ubique HTCC1062 ATP-dependent DNA helicase RecG YP_266404.1 972986 R 335992 CDS YP_266405.1 71083685 3517896 975062..975328 1 NC_007205.1 hypothetical protein 975328 3517896 SAR11_0994 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266405.1 975062 D 335992 CDS YP_266406.1 71083686 3517898 975511..976392 1 NC_007205.1 rarD protein 976392 rarD 3517898 rarD Candidatus Pelagibacter ubique HTCC1062 rarD protein YP_266406.1 975511 D 335992 CDS YP_266407.1 71083687 3517899 976379..977380 1 NC_007205.1 similar to Shewanella oneidensis MR-1 gb|AAN55045.1; membrane-bound lytic transglycosylase-like protein 977380 mltB 3517899 mltB Candidatus Pelagibacter ubique HTCC1062 membrane-bound lytic transglycosylase-like protein YP_266407.1 976379 D 335992 CDS YP_266408.1 71083688 3517900 977370..978128 1 NC_007205.1 hypothetical protein 978128 3517900 SAR11_0997 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266408.1 977370 D 335992 CDS YP_266409.1 71083689 3517901 978121..979272 1 NC_007205.1 serine-type D-Ala-D-Ala carboxypeptidase 979272 dacC 3517901 dacC Candidatus Pelagibacter ubique HTCC1062 serine-type D-Ala-D-Ala carboxypeptidase YP_266409.1 978121 D 335992 CDS YP_266410.1 71083690 3517902 979265..979876 1 NC_007205.1 thymidylate kinase 979876 tmk 3517902 tmk Candidatus Pelagibacter ubique HTCC1062 thymidylate kinase YP_266410.1 979265 D 335992 CDS YP_266411.1 71083691 3517903 979881..980813 1 NC_007205.1 delta prime subunit; DNA polymerase III 980813 holB 3517903 holB Candidatus Pelagibacter ubique HTCC1062 DNA polymerase III YP_266411.1 979881 D 335992 CDS YP_266412.1 71083692 3517904 980814..982355 1 NC_007205.1 methionyl-tRNA synthetase 982355 metS 3517904 metS Candidatus Pelagibacter ubique HTCC1062 methionyl-tRNA synthetase YP_266412.1 980814 D 335992 CDS YP_266413.1 71083693 3517905 982348..983112 1 NC_007205.1 TatD related DNase 983112 3517905 SAR11_1002 Candidatus Pelagibacter ubique HTCC1062 TatD related DNase YP_266413.1 982348 D 335992 CDS YP_266414.1 71083694 3517906 983112..983891 1 NC_007205.1 metallo-beta-lactamase family protein 983891 3517906 SAR11_1003 Candidatus Pelagibacter ubique HTCC1062 metallo-beta-lactamase family protein YP_266414.1 983112 D 335992 CDS YP_266415.1 71083695 3517907 complement(983880..984392) 1 NC_007205.1 glutathione peroxidase 984392 bsaA 3517907 bsaA Candidatus Pelagibacter ubique HTCC1062 glutathione peroxidase YP_266415.1 983880 R 335992 CDS YP_266416.1 71083696 3517908 complement(984438..985544) 1 NC_007205.1 Na+/H+ antiporter 1 985544 nhaA 3517908 nhaA Candidatus Pelagibacter ubique HTCC1062 Na+/H+ antiporter 1 YP_266416.1 984438 R 335992 CDS YP_266417.1 71083697 3517909 complement(985615..986127) 1 NC_007205.1 hypothetical protein 986127 3517909 SAR11_1006 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266417.1 985615 R 335992 CDS YP_266418.1 71083698 3517443 986302..986583 1 NC_007205.1 ETC complex I subunit region 986583 ndufs4 3517443 ndufs4 Candidatus Pelagibacter ubique HTCC1062 ETC complex I subunit region YP_266418.1 986302 D 335992 CDS YP_266419.1 71083699 3517444 986586..987578 1 NC_007205.1 in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transporter 987578 sbmA 3517444 sbmA Candidatus Pelagibacter ubique HTCC1062 transporter YP_266419.1 986586 D 335992 CDS YP_266420.1 71083700 3517445 987578..988525 1 NC_007205.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 988525 glpX 3517445 glpX Candidatus Pelagibacter ubique HTCC1062 fructose 1,6-bisphosphatase II YP_266420.1 987578 D 335992 CDS YP_266421.1 71083701 3517446 988522..990216 1 NC_007205.1 single-stranded-DNA-specific exonuclease RecJ 990216 recJ 3517446 recJ Candidatus Pelagibacter ubique HTCC1062 single-stranded-DNA-specific exonuclease RecJ YP_266421.1 988522 D 335992 CDS YP_266422.1 71083702 3517448 990347..990598 1 NC_007205.1 C subunit, N-terminal; excinuclease ABC subunit C 990598 3517448 SAR11_1011 Candidatus Pelagibacter ubique HTCC1062 excinuclease ABC subunit C YP_266422.1 990347 D 335992 CDS YP_266423.1 71083703 3517449 990598..992703 1 NC_007205.1 group 1 glycosyl transferase 992703 3517449 SAR11_1012 Candidatus Pelagibacter ubique HTCC1062 group 1 glycosyl transferase YP_266423.1 990598 D 335992 CDS YP_266424.1 71083704 3517450 992704..993414 1 NC_007205.1 Xylanase/chitin deacetylase family enzyme; polysaccharide deacetylase 993414 yxkH 3517450 yxkH Candidatus Pelagibacter ubique HTCC1062 polysaccharide deacetylase YP_266424.1 992704 D 335992 CDS YP_266425.1 71083705 3517451 993416..994618 1 NC_007205.1 similar to Escherichia coli gb|AAL67563.1; pyridoxamine 5-phosphate-dependent dehydrase 994618 3517451 SAR11_1014 Candidatus Pelagibacter ubique HTCC1062 pyridoxamine 5-phosphate-dependent dehydrase YP_266425.1 993416 D 335992 CDS YP_266426.1 71083706 3517452 994615..995427 1 NC_007205.1 NAD dependent epimerase/dehydratase f 995427 3517452 SAR11_1015 Candidatus Pelagibacter ubique HTCC1062 NAD dependent epimerase/dehydratase f YP_266426.1 994615 D 335992 CDS YP_266427.1 71083707 3517453 995434..996108 1 NC_007205.1 hypothetical protein 996108 3517453 SAR11_1016 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266427.1 995434 D 335992 CDS YP_266428.1 71083708 3517454 996113..997066 1 NC_007205.1 hypothetical protein 997066 3517454 SAR11_1017 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266428.1 996113 D 335992 CDS YP_266429.1 71083709 3517455 complement(997089..997862) 1 NC_007205.1 methyltransferase FkbM 997862 3517455 SAR11_1018 Candidatus Pelagibacter ubique HTCC1062 methyltransferase FkbM YP_266429.1 997089 R 335992 CDS YP_266430.1 71083710 3517456 complement(997872..998828) 1 NC_007205.1 integrase/recombinase xerD-like protein 998828 xerD 3517456 xerD Candidatus Pelagibacter ubique HTCC1062 integrase/recombinase xerD-like protein YP_266430.1 997872 R 335992 CDS YP_266431.1 71083711 3517457 999127..999570 1 NC_007205.1 acetyltransferase 999570 3517457 SAR11_1020 Candidatus Pelagibacter ubique HTCC1062 acetyltransferase YP_266431.1 999127 D 335992 CDS YP_266432.1 71083712 3517458 999542..999829 1 NC_007205.1 6-O-methylguanine DNA methyltransferase 999829 ada 3517458 ada Candidatus Pelagibacter ubique HTCC1062 6-O-methylguanine DNA methyltransferase YP_266432.1 999542 D 335992 CDS YP_266433.1 71083713 3517422 complement(1000426..1001238) 1 NC_007205.1 DMT family permease 1001238 3517422 SAR11_1022 Candidatus Pelagibacter ubique HTCC1062 DMT family permease YP_266433.1 1000426 R 335992 CDS YP_266434.1 71083714 3517423 complement(1001292..1002194) 1 NC_007205.1 similar to Pseudomonas aeruginosa PA01 pir||A83623; hypothetical protein 1002194 3517423 SAR11_1023 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266434.1 1001292 R 335992 CDS YP_266435.1 71083715 3517424 complement(1002194..1003486) 1 NC_007205.1 homoserine dehydrogenase 1003486 hom 3517424 hom Candidatus Pelagibacter ubique HTCC1062 homoserine dehydrogenase YP_266435.1 1002194 R 335992 CDS YP_266436.1 71083716 3517425 complement(1003487..1003711) 1 NC_007205.1 hypothetical protein 1003711 3517425 SAR11_1026 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266436.1 1003487 R 335992 CDS YP_266437.1 71083717 3517426 complement(1003708..1004730) 1 NC_007205.1 N-acetyl-gamma-glutamyl-phosphate reductase 1004730 argC 3517426 argC Candidatus Pelagibacter ubique HTCC1062 N-acetyl-gamma-glutamyl-phosphate reductase YP_266437.1 1003708 R 335992 CDS YP_266438.1 71083718 3517427 complement(1004766..1005215) 1 NC_007205.1 30S ribosomal protein S9 1005215 rpsI 3517427 rpsI Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S9 YP_266438.1 1004766 R 335992 CDS YP_266439.1 71083719 3517428 complement(1005217..1005678) 1 NC_007205.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1005678 rplM 3517428 rplM Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L13 YP_266439.1 1005217 R 335992 CDS YP_266440.1 71083720 3517429 1005891..1007219 1 NC_007205.1 O-acetylhomoserine (thiol)-lyase 1007219 metY 3517429 metY Candidatus Pelagibacter ubique HTCC1062 O-acetylhomoserine (thiol)-lyase YP_266440.1 1005891 D 335992 CDS YP_266441.1 71083721 3517430 complement(1007212..1008222) 1 NC_007205.1 similar to BA483f11.2.1 cox15 (yeast); cytochrome c oxidase assembly protein (isoform 1) 1008222 coxW 3517430 coxW Candidatus Pelagibacter ubique HTCC1062 cytochrome c oxidase assembly protein (isoform 1) YP_266441.1 1007212 R 335992 CDS YP_266442.1 71083722 3517431 1008265..1008555 1 NC_007205.1 chorismate mutase 1008555 3517431 SAR11_1032 Candidatus Pelagibacter ubique HTCC1062 chorismate mutase YP_266442.1 1008265 D 335992 CDS YP_266443.1 71083723 3517432 complement(1008558..1008749) 1 NC_007205.1 50S ribosomal protein L33 1008749 rpmG 3517432 rpmG Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L33 YP_266443.1 1008558 R 335992 CDS YP_266444.1 71083724 3517433 complement(1008751..1009128) 1 NC_007205.1 merR family; transcriptional regulator 1009128 merR 3517433 merR Candidatus Pelagibacter ubique HTCC1062 transcriptional regulator YP_266444.1 1008751 R 335992 CDS YP_266445.1 71083725 3517434 complement(1009118..1009426) 1 NC_007205.1 DNA-binding protein 1009426 himA 3517434 himA Candidatus Pelagibacter ubique HTCC1062 DNA-binding protein YP_266445.1 1009118 R 335992 CDS YP_266446.1 71083726 3517435 complement(1009420..1010421) 1 NC_007205.1 fatty acid/phospholipid synthesis protein PlsX 1010421 plsX 3517435 plsX Candidatus Pelagibacter ubique HTCC1062 fatty acid/phospholipid synthesis protein PlsX YP_266446.1 1009420 R 335992 CDS YP_266447.1 71083727 3517436 complement(1010436..1010618) 1 NC_007205.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1010618 rpmF 3517436 rpmF Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L32 YP_266447.1 1010436 R 335992 CDS YP_266448.1 71083728 3517437 complement(1010626..1011093) 1 NC_007205.1 hypothetical protein 1011093 3517437 SAR11_1038 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266448.1 1010626 R 335992 CDS YP_266449.1 71083729 3517438 1011092..1011556 1 NC_007205.1 hypothetical protein 1011556 3517438 SAR11_1039 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266449.1 1011092 D 335992 CDS YP_266450.1 71083730 3517439 complement(1011564..1013669) 1 NC_007205.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1013669 hppA 3517439 hppA Candidatus Pelagibacter ubique HTCC1062 membrane-bound proton-translocating pyrophosphatase YP_266450.1 1011564 R 335992 CDS YP_266451.1 71083731 3517440 complement(1013756..1014715) 1 NC_007205.1 thiamine-phosphate kinase 1014715 thiL 3517440 thiL Candidatus Pelagibacter ubique HTCC1062 thiamine-phosphate kinase YP_266451.1 1013756 R 335992 CDS YP_266452.1 71083732 3517441 complement(1014708..1015112) 1 NC_007205.1 antitermination protein NusB 1015112 nusB 3517441 nusB Candidatus Pelagibacter ubique HTCC1062 antitermination protein NusB YP_266452.1 1014708 R 335992 CDS YP_266453.1 71083733 3517383 complement(1015115..1015501) 1 NC_007205.1 riboflavin synthase 1015501 ribH 3517383 ribH Candidatus Pelagibacter ubique HTCC1062 riboflavin synthase YP_266453.1 1015115 R 335992 CDS YP_266454.1 71083734 3517384 complement(1015501..1016601) 1 NC_007205.1 GTP cyclohydrolase II 1016601 ribA 3517384 ribA Candidatus Pelagibacter ubique HTCC1062 GTP cyclohydrolase II YP_266454.1 1015501 R 335992 CDS YP_266455.1 71083735 3517385 complement(1016588..1017181) 1 NC_007205.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1017181 ribB 3517385 ribB Candidatus Pelagibacter ubique HTCC1062 riboflavin synthase subunit alpha YP_266455.1 1016588 R 335992 CDS YP_266456.1 71083736 3517386 complement(1017186..1018241) 1 NC_007205.1 5-amino-6-(5-phosphoribosylamino)uracil reductase 1018241 ribD 3517386 ribD Candidatus Pelagibacter ubique HTCC1062 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_266456.1 1017186 R 335992 CDS YP_266457.1 71083737 3517387 complement(1018267..1018725) 1 NC_007205.1 transcriptional regulator NrdR 1018725 nrdR 3517387 nrdR Candidatus Pelagibacter ubique HTCC1062 transcriptional regulator NrdR YP_266457.1 1018267 R 335992 CDS YP_266458.1 71083738 3517388 complement(1018725..1020035) 1 NC_007205.1 glycine hydroxymethyltransferase 1020035 glyA 3517388 glyA Candidatus Pelagibacter ubique HTCC1062 glycine hydroxymethyltransferase YP_266458.1 1018725 R 335992 CDS YP_266459.1 71083739 3517389 complement(1020038..1020463) 1 NC_007205.1 ribose-5-phosphate isomerase 1020463 rpiB 3517389 rpiB Candidatus Pelagibacter ubique HTCC1062 ribose-5-phosphate isomerase YP_266459.1 1020038 R 335992 CDS YP_266460.1 71083740 3517390 complement(1020465..1021106) 1 NC_007205.1 hypothetical protein 1021106 3517390 SAR11_1050 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266460.1 1020465 R 335992 CDS YP_266461.1 71083741 3517391 1021179..1022168 1 NC_007205.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1022168 hemB 3517391 hemB Candidatus Pelagibacter ubique HTCC1062 delta-aminolevulinic acid dehydratase YP_266461.1 1021179 D 335992 CDS YP_266462.1 71083742 3517392 complement(1022169..1022849) 1 NC_007205.1 recombination protein O 1022849 recO 3517392 recO Candidatus Pelagibacter ubique HTCC1062 recombination protein O YP_266462.1 1022169 R 335992 CDS YP_266463.1 71083743 3517393 complement(1022846..1023514) 1 NC_007205.1 ribonuclease III 1023514 rnc 3517393 rnc Candidatus Pelagibacter ubique HTCC1062 ribonuclease III YP_266463.1 1022846 R 335992 CDS YP_266464.1 71083744 3517394 complement(1023514..1024248) 1 NC_007205.1 signal peptidase I 1024248 sipF 3517394 sipF Candidatus Pelagibacter ubique HTCC1062 signal peptidase I YP_266464.1 1023514 R 335992 CDS YP_266465.1 71083745 3517395 complement(1024245..1024631) 1 NC_007205.1 Holo-[acyl-carrier protein] synthase (Holo-ACP synthase) 1024631 acpS 3517395 acpS Candidatus Pelagibacter ubique HTCC1062 Holo-[acyl-carrier protein] synthase (Holo-ACP synthase) YP_266465.1 1024245 R 335992 CDS YP_266466.1 71083746 3517396 complement(1024634..1025353) 1 NC_007205.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1025353 pdxJ 3517396 pdxJ Candidatus Pelagibacter ubique HTCC1062 pyridoxine 5'-phosphate synthase YP_266466.1 1024634 R 335992 CDS YP_266467.1 71083747 3517397 complement(1025350..1025937) 1 NC_007205.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1025937 pyrE 3517397 pyrE Candidatus Pelagibacter ubique HTCC1062 orotate phosphoribosyltransferase YP_266467.1 1025350 R 335992 CDS YP_266468.1 71083748 3517398 complement(1025894..1027639) 1 NC_007205.1 GTP pyrophosphokinase 1027639 3517398 SAR11_1058 Candidatus Pelagibacter ubique HTCC1062 GTP pyrophosphokinase YP_266468.1 1025894 R 335992 CDS YP_266469.1 71083749 3517399 complement(1027659..1028180) 1 NC_007205.1 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 1028180 folK 3517399 folK Candidatus Pelagibacter ubique HTCC1062 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase YP_266469.1 1027659 R 335992 CDS YP_266470.1 71083750 3517400 complement(1028146..1028616) 1 NC_007205.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1028616 smpB 3517400 smpB Candidatus Pelagibacter ubique HTCC1062 SsrA-binding protein YP_266470.1 1028146 R 335992 CDS YP_266471.1 71083751 3517401 complement(1028616..1029497) 1 NC_007205.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1029497 dapA 3517401 dapA Candidatus Pelagibacter ubique HTCC1062 dihydrodipicolinate synthase YP_266471.1 1028616 R 335992 CDS YP_266472.1 71083752 3517364 1029539..1031752 1 NC_007205.1 lytic murein transglycosylase 1031752 slt 3517364 slt Candidatus Pelagibacter ubique HTCC1062 lytic murein transglycosylase YP_266472.1 1029539 D 335992 CDS YP_266473.1 71083753 3517366 1031913..1033166 1 NC_007205.1 sarcosine oxidase 1033166 soxB 3517366 soxB Candidatus Pelagibacter ubique HTCC1062 sarcosine oxidase YP_266473.1 1031913 D 335992 CDS YP_266474.1 71083754 3517367 1033166..1033441 1 NC_007205.1 sarcosine oxidase subunit delta 1033441 soxD 3517367 soxD Candidatus Pelagibacter ubique HTCC1062 sarcosine oxidase subunit delta YP_266474.1 1033166 D 335992 CDS YP_266475.1 71083755 3517368 1033446..1036454 1 NC_007205.1 sarcosine oxidase subunit alpha 1036454 soxA 3517368 soxA Candidatus Pelagibacter ubique HTCC1062 sarcosine oxidase subunit alpha YP_266475.1 1033446 D 335992 CDS YP_266476.2 304570562 3517369 1036447..1037010 1 NC_007205.1 sarcosine oxidase subunit gamma 1037010 soxG 3517369 soxG Candidatus Pelagibacter ubique HTCC1062 sarcosine oxidase subunit gamma YP_266476.2 1036447 D 335992 CDS YP_266477.1 71083757 3517370 1037047..1037814 1 NC_007205.1 cyclohexadienyl dehydratase 1037814 pheC 3517370 pheC Candidatus Pelagibacter ubique HTCC1062 cyclohexadienyl dehydratase YP_266477.1 1037047 D 335992 CDS YP_266478.1 71083758 3517371 1037915..1038595 1 NC_007205.1 ABC transporter permease 1038595 glnP 3517371 glnP Candidatus Pelagibacter ubique HTCC1062 ABC transporter permease YP_266478.1 1037915 D 335992 CDS YP_266479.1 71083759 3517372 1038595..1038858 1 NC_007205.1 N-acetyltransferase GCN5 1038858 3517372 SAR11_1071 Candidatus Pelagibacter ubique HTCC1062 N-acetyltransferase GCN5 YP_266479.1 1038595 D 335992 CDS YP_266480.1 71083760 3517373 complement(1038898..1039383) 1 NC_007205.1 nuclease-like protein 1039383 3517373 SAR11_1072 Candidatus Pelagibacter ubique HTCC1062 nuclease-like protein YP_266480.1 1038898 R 335992 CDS YP_266481.1 71083761 3517374 complement(1039346..1040716) 1 NC_007205.1 similar to Geobacter sulfurreducens PCA gb|AAR36025.1| MATE efflux family protein; matE efflux family protein 1040716 norM 3517374 norM Candidatus Pelagibacter ubique HTCC1062 matE efflux family protein YP_266481.1 1039346 R 335992 CDS YP_266482.1 71083762 3517375 complement(1040726..1041631) 1 NC_007205.1 similar to Shewanella oneidensis MR-1 sp|Q8EES8|YM90_SHEON hypothetical UPF0176 protein; rhodanese domain-containing protein 1041631 yceA 3517375 yceA Candidatus Pelagibacter ubique HTCC1062 rhodanese domain-containing protein YP_266482.1 1040726 R 335992 CDS YP_266483.1 71083763 3517376 complement(1041631..1042281) 1 NC_007205.1 O-methyltransferase 1042281 3517376 SAR11_1075 Candidatus Pelagibacter ubique HTCC1062 O-methyltransferase YP_266483.1 1041631 R 335992 CDS YP_266484.1 71083764 3517377 complement(1042318..1043796) 1 NC_007205.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1043796 gatB 3517377 gatB Candidatus Pelagibacter ubique HTCC1062 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_266484.1 1042318 R 335992 CDS YP_266485.1 71083765 3517378 complement(1043797..1045254) 1 NC_007205.1 glutamyl-tRNA(Gln) amidotransferase subunit A 1045254 gatA 3517378 gatA Candidatus Pelagibacter ubique HTCC1062 glutamyl-tRNA(Gln) amidotransferase subunit A YP_266485.1 1043797 R 335992 CDS YP_266486.1 71083766 3517379 complement(1045254..1045541) 1 NC_007205.1 Glu-tRNAGln amidotransferase C subunit 1045541 gatC 3517379 gatC Candidatus Pelagibacter ubique HTCC1062 Glu-tRNAGln amidotransferase C subunit YP_266486.1 1045254 R 335992 CDS YP_266487.1 71083767 3517380 1045593..1046048 1 NC_007205.1 Holliday junction resolvase 1046048 3517380 SAR11_1079 Candidatus Pelagibacter ubique HTCC1062 Holliday junction resolvase YP_266487.1 1045593 D 335992 CDS YP_266488.1 71083768 3517381 1046091..1047032 1 NC_007205.1 aspartate carbamoyltransferase 1047032 pyrB 3517381 pyrB Candidatus Pelagibacter ubique HTCC1062 aspartate carbamoyltransferase YP_266488.1 1046091 D 335992 CDS YP_266489.1 71083769 3517382 1047033..1048319 1 NC_007205.1 dihydroorotase 1048319 pyrC 3517382 pyrC Candidatus Pelagibacter ubique HTCC1062 dihydroorotase YP_266489.1 1047033 D 335992 CDS YP_266490.1 71083770 3517243 1048322..1048897 1 NC_007205.1 hypothetical protein 1048897 ygiH 3517243 ygiH Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266490.1 1048322 D 335992 CDS YP_266491.1 71083771 3517244 1048935..1051526 1 NC_007205.1 DNA topoisomerase I 1051526 topA 3517244 topA Candidatus Pelagibacter ubique HTCC1062 DNA topoisomerase I YP_266491.1 1048935 D 335992 CDS YP_266492.1 71083772 3517245 1051523..1051825 1 NC_007205.1 hypothetical protein 1051825 3517245 SAR11_1084 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266492.1 1051523 D 335992 CDS YP_266493.1 71083773 3517246 1051828..1052289 1 NC_007205.1 endoribonuclease L-PSP 1052289 3517246 SAR11_1085 Candidatus Pelagibacter ubique HTCC1062 endoribonuclease L-PSP YP_266493.1 1051828 D 335992 CDS YP_266494.1 71083774 3517247 complement(1052286..1053584) 1 NC_007205.1 udpglucose 6-dehydrogenase 1053584 ugd 3517247 ugd Candidatus Pelagibacter ubique HTCC1062 udpglucose 6-dehydrogenase YP_266494.1 1052286 R 335992 CDS YP_266495.1 71083775 3517248 complement(1053581..1054396) 1 NC_007205.1 UTP-glucose-1-phosphate uridylyltransferase 1054396 galU 3517248 galU Candidatus Pelagibacter ubique HTCC1062 UTP-glucose-1-phosphate uridylyltransferase YP_266495.1 1053581 R 335992 CDS YP_266496.1 71083776 3517249 1054401..1055243 1 NC_007205.1 pantoate-beta-alanine ligase 1055243 panC 3517249 panC Candidatus Pelagibacter ubique HTCC1062 pantoate-beta-alanine ligase YP_266496.1 1054401 D 335992 CDS YP_266497.1 71083777 3517250 complement(1055240..1056613) 1 NC_007205.1 magnesium transport protein mgtE 1056613 mgtE 3517250 mgtE Candidatus Pelagibacter ubique HTCC1062 magnesium transport protein mgtE YP_266497.1 1055240 R 335992 CDS YP_266498.1 71083778 3517251 1056675..1057295 1 NC_007205.1 lipoate-protein ligase B 1057295 rfaL 3517251 rfaL Candidatus Pelagibacter ubique HTCC1062 lipoate-protein ligase B YP_266498.1 1056675 D 335992 CDS YP_266499.1 71083779 3517252 complement(1057276..1058190) 1 NC_007205.1 ribosomal large subunit pseudouridine synthase C 1058190 rluC 3517252 rluC Candidatus Pelagibacter ubique HTCC1062 ribosomal large subunit pseudouridine synthase C YP_266499.1 1057276 R 335992 CDS YP_266500.1 71083780 3517253 complement(1058215..1058652) 1 NC_007205.1 50S ribosomal protein L17 1058652 rplQ 3517253 rplQ Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L17 YP_266500.1 1058215 R 335992 CDS YP_266501.1 71083781 3517254 complement(1058652..1059680) 1 NC_007205.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1059680 rpoA 3517254 rpoA Candidatus Pelagibacter ubique HTCC1062 DNA-directed RNA polymerase subunit alpha YP_266501.1 1058652 R 335992 CDS YP_266502.1 71083782 3517255 complement(1059684..1060136) 1 NC_007205.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1060136 rpsK 3517255 rpsK Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S11 YP_266502.1 1059684 R 335992 CDS YP_266503.1 71083783 3517256 complement(1060144..1060527) 1 NC_007205.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1060527 rpsM 3517256 rpsM Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S13 YP_266503.1 1060144 R 335992 CDS YP_266504.1 71083784 3517257 complement(1060583..1061224) 1 NC_007205.1 adenylate kinase 1061224 adk 3517257 adk Candidatus Pelagibacter ubique HTCC1062 adenylate kinase YP_266504.1 1060583 R 335992 CDS YP_266505.1 71083785 3517258 complement(1061229..1062509) 1 NC_007205.1 preprotein translocase subunit SecY 1062509 secY 3517258 secY Candidatus Pelagibacter ubique HTCC1062 preprotein translocase subunit SecY YP_266505.1 1061229 R 335992 CDS YP_266506.1 71083786 3517259 complement(1062520..1062981) 1 NC_007205.1 50S ribosomal protein L15 1062981 rplO 3517259 rplO Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L15 YP_266506.1 1062520 R 335992 CDS YP_266507.1 71083787 3517260 complement(1062981..1063493) 1 NC_007205.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1063493 rpsE 3517260 rpsE Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S5 YP_266507.1 1062981 R 335992 CDS YP_266508.1 71083788 3517261 complement(1063496..1063852) 1 NC_007205.1 50S ribosomal protein L18 1063852 rplR 3517261 rplR Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L18 YP_266508.1 1063496 R 335992 CDS YP_266509.1 71083789 3517299 complement(1063852..1064391) 1 NC_007205.1 50S ribosomal protein L6 1064391 rplF 3517299 rplF Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L6 YP_266509.1 1063852 R 335992 CDS YP_266510.1 71083790 3517300 complement(1064391..1064786) 1 NC_007205.1 30S ribosomal protein S8 1064786 rpsH 3517300 rpsH Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S8 YP_266510.1 1064391 R 335992 CDS YP_266511.1 71083791 3517301 complement(1064797..1065102) 1 NC_007205.1 30S ribosomal protein S14 1065102 rpsN 3517301 rpsN Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S14 YP_266511.1 1064797 R 335992 CDS YP_266512.1 71083792 3517302 complement(1065105..1065659) 1 NC_007205.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1065659 rplE 3517302 rplE Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L5 YP_266512.1 1065105 R 335992 CDS YP_266513.1 71083793 3517303 complement(1065659..1065907) 1 NC_007205.1 50S ribosomal protein L24 1065907 rplX 3517303 rplX Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L24 YP_266513.1 1065659 R 335992 CDS YP_266514.1 71083794 3517304 complement(1065908..1066276) 1 NC_007205.1 50S ribosomal protein L14 1066276 rplN 3517304 rplN Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L14 YP_266514.1 1065908 R 335992 CDS YP_266515.1 71083795 3517305 complement(1066273..1066509) 1 NC_007205.1 30S ribosomal protein S17 1066509 rpsQ 3517305 rpsQ Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S17 YP_266515.1 1066273 R 335992 CDS YP_266516.1 71083796 3517306 complement(1066502..1066693) 1 NC_007205.1 50S ribosomal protein L29 1066693 rpmC 3517306 rpmC Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L29 YP_266516.1 1066502 R 335992 CDS YP_266517.1 71083797 3517307 complement(1066695..1067105) 1 NC_007205.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1067105 rplP 3517307 rplP Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L16 YP_266517.1 1066695 R 335992 CDS YP_266518.1 71083798 3517308 complement(1067108..1067788) 1 NC_007205.1 30S ribosomal protein S3 1067788 rpsC 3517308 rpsC Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S3 YP_266518.1 1067108 R 335992 CDS YP_266519.1 71083799 3517309 complement(1067772..1068170) 1 NC_007205.1 50S ribosomal protein L22 1068170 rplV 3517309 rplV Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L22 YP_266519.1 1067772 R 335992 CDS YP_266520.1 71083800 3517310 complement(1068173..1068466) 1 NC_007205.1 30S ribosomal protein S19 1068466 rpsS 3517310 rpsS Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S19 YP_266520.1 1068173 R 335992 CDS YP_266521.1 71083801 3517311 complement(1068466..1069311) 1 NC_007205.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1069311 rplB 3517311 rplB Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L2 YP_266521.1 1068466 R 335992 CDS YP_266522.1 71083802 3517312 complement(1069314..1069607) 1 NC_007205.1 50S ribosomal protein L23 1069607 rplW 3517312 rplW Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L23 YP_266522.1 1069314 R 335992 CDS YP_266523.1 71083803 3517313 complement(1069609..1070232) 1 NC_007205.1 50S ribosomal protein L4 1070232 rplD 3517313 rplD Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L4 YP_266523.1 1069609 R 335992 CDS YP_266524.1 71083804 3517314 complement(1070232..1070942) 1 NC_007205.1 50S ribosomal protein L3 1070942 rplC 3517314 rplC Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L3 YP_266524.1 1070232 R 335992 CDS YP_266525.1 71083805 3517315 complement(1070945..1071253) 1 NC_007205.1 30S ribosomal protein S10 1071253 rpsJ 3517315 rpsJ Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S10 YP_266525.1 1070945 R 335992 CDS YP_266526.1 71083806 3517316 complement(1071259..1073337) 1 NC_007205.1 substrain RIMD 0; translation elongation factor EF-G 1073337 fusA 3517316 fusA Candidatus Pelagibacter ubique HTCC1062 translation elongation factor EF-G YP_266526.1 1071259 R 335992 CDS YP_266527.1 71083807 3517317 complement(1073344..1073814) 1 NC_007205.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1073814 rpsG 3517317 rpsG Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S7 YP_266527.1 1073344 R 335992 CDS YP_266528.1 71083808 3517318 complement(1073817..1074188) 1 NC_007205.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1074188 rpsL 3517318 rpsL Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S12 YP_266528.1 1073817 R 335992 CDS YP_266529.1 71083809 3517474 complement(1074360..1078529) 1 NC_007205.1 DNA-directed RNA polymerase subunit beta' 1078529 rpoC 3517474 rpoC Candidatus Pelagibacter ubique HTCC1062 DNA-directed RNA polymerase subunit beta' YP_266529.1 1074360 R 335992 CDS YP_266530.1 71083810 3517475 complement(1078532..1082623) 1 NC_007205.1 DNA-directed RNA polymerase 1082623 rpoB 3517475 rpoB Candidatus Pelagibacter ubique HTCC1062 DNA-directed RNA polymerase YP_266530.1 1078532 R 335992 CDS YP_266531.1 71083811 3517476 complement(1082679..1083044) 1 NC_007205.1 50S ribosomal protein L31 1083044 rplL 3517476 rplL Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L31 YP_266531.1 1082679 R 335992 CDS YP_266532.1 71083812 3517477 complement(1083072..1083572) 1 NC_007205.1 50S ribosomal protein L10 1083572 rplJ 3517477 rplJ Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L10 YP_266532.1 1083072 R 335992 CDS YP_266533.1 71083813 3517478 complement(1083578..1084267) 1 NC_007205.1 50S ribosomal protein L1 1084267 rplA 3517478 rplA Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L1 YP_266533.1 1083578 R 335992 CDS YP_266534.1 71083814 3517479 complement(1084267..1084692) 1 NC_007205.1 50S ribosomal protein L11 1084692 rplK 3517479 rplK Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L11 YP_266534.1 1084267 R 335992 CDS YP_266535.1 71083815 3517480 complement(1084692..1085222) 1 NC_007205.1 transcription antitermination protein NusG 1085222 nusG 3517480 nusG Candidatus Pelagibacter ubique HTCC1062 transcription antitermination protein NusG YP_266535.1 1084692 R 335992 CDS YP_266536.1 71083816 3517481 complement(1085222..1085413) 1 NC_007205.1 protein secE/sec61-gamma protein 1085413 secE 3517481 secE Candidatus Pelagibacter ubique HTCC1062 protein secE/sec61-gamma protein YP_266536.1 1085222 R 335992 CDS YP_266537.1 71083817 3517483 complement(1085516..1086706) 1 NC_007205.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1086706 tufB 3517483 tufB Candidatus Pelagibacter ubique HTCC1062 elongation factor Tu YP_266537.1 1085516 R 335992 CDS YP_266538.1 71083818 3517486 1087091..1087834 1 NC_007205.1 SpoU rRNA methylase family 1087834 3517486 SAR11_1131 Candidatus Pelagibacter ubique HTCC1062 SpoU rRNA methylase family YP_266538.1 1087091 D 335992 CDS YP_266539.1 71083819 3517488 complement(1087948..1088727) 1 NC_007205.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1088727 ppnK 3517488 ppnK Candidatus Pelagibacter ubique HTCC1062 inorganic polyphosphate/ATP-NAD kinase YP_266539.1 1087948 R 335992 CDS YP_266540.1 71083820 3517876 complement(1088896..1089297) 1 NC_007205.1 similar to Clostridium perfringens dbj|BAB80118.1|; hypothetical protein 1089297 3517876 SAR11_1133 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266540.1 1088896 R 335992 CDS YP_266541.1 71083821 3517877 complement(1089302..1090051) 1 NC_007205.1 similar to COG1058: Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; hypothetical protein 1090051 3517877 SAR11_1134 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266541.1 1089302 R 335992 CDS YP_266542.1 71083822 3517878 1090073..1090771 1 NC_007205.1 sugar fermentation stimulation protein 1090771 sfsA 3517878 sfsA Candidatus Pelagibacter ubique HTCC1062 sugar fermentation stimulation protein YP_266542.1 1090073 D 335992 CDS YP_266543.1 71083823 3517879 1090764..1091534 1 NC_007205.1 methionine aminopeptidase 1091534 map 3517879 map Candidatus Pelagibacter ubique HTCC1062 methionine aminopeptidase YP_266543.1 1090764 D 335992 CDS YP_266544.1 71083824 3517880 1091538..1092830 1 NC_007205.1 adenylosuccinate lyase 1092830 purB 3517880 purB Candidatus Pelagibacter ubique HTCC1062 adenylosuccinate lyase YP_266544.1 1091538 D 335992 CDS YP_266545.1 71083825 3517881 1092830..1093612 1 NC_007205.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1093612 purC 3517881 purC Candidatus Pelagibacter ubique HTCC1062 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_266545.1 1092830 D 335992 CDS YP_266546.1 71083826 3517882 1093614..1093856 1 NC_007205.1 purQ-like protein; phosphoribosylformylglycinamidine (FGAM) synthase 1093856 3517882 SAR11_1139 Candidatus Pelagibacter ubique HTCC1062 phosphoribosylformylglycinamidine (FGAM) synthase YP_266546.1 1093614 D 335992 CDS YP_266547.1 71083827 3517883 1093863..1094546 1 NC_007205.1 phosphoribosylformylglycinamidine synthase I 1094546 purQ 3517883 purQ Candidatus Pelagibacter ubique HTCC1062 phosphoribosylformylglycinamidine synthase I YP_266547.1 1093863 D 335992 CDS YP_266548.1 71083828 3517884 1094546..1096738 1 NC_007205.1 phosphoribosylformylglycinamidine synthase II (FGAM synthase II) 1096738 purL 3517884 purL Candidatus Pelagibacter ubique HTCC1062 phosphoribosylformylglycinamidine synthase II (FGAM synthase II) YP_266548.1 1094546 D 335992 CDS YP_266549.1 71083829 3517885 1096740..1096970 1 NC_007205.1 BolA-like protein 1096970 3517885 SAR11_1142 Candidatus Pelagibacter ubique HTCC1062 BolA-like protein YP_266549.1 1096740 D 335992 CDS YP_266550.1 71083830 3517886 1096970..1097302 1 NC_007205.1 glutaredoxin 1097302 grlA 3517886 grlA Candidatus Pelagibacter ubique HTCC1062 glutaredoxin YP_266550.1 1096970 D 335992 CDS YP_266551.1 71083831 3517887 complement(1097307..1098497) 1 NC_007205.1 cyclopropane-fatty-acyl-phospholipid synthase 1098497 cfa 3517887 cfa Candidatus Pelagibacter ubique HTCC1062 cyclopropane-fatty-acyl-phospholipid synthase YP_266551.1 1097307 R 335992 CDS YP_266552.1 71083832 3517888 complement(1098633..1099250) 1 NC_007205.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1099250 rpsD 3517888 rpsD Candidatus Pelagibacter ubique HTCC1062 30S ribosomal protein S4 YP_266552.1 1098633 R 335992 CDS YP_266553.1 71083833 3517889 complement(1099291..1100004) 1 NC_007205.1 SpoU rRNA methylase family 1100004 3517889 SAR11_1146 Candidatus Pelagibacter ubique HTCC1062 SpoU rRNA methylase family YP_266553.1 1099291 R 335992 CDS YP_266554.1 71083834 3517890 complement(1100004..1101605) 1 NC_007205.1 catalyzes the formation of 2-isopropylmalate from 1-methyl-2-oxobutanoate and acetyl-CoA; alpha-isopropylmalate synthase 1101605 3517890 SAR11_1147 Candidatus Pelagibacter ubique HTCC1062 alpha-isopropylmalate synthase YP_266554.1 1100004 R 335992 CDS YP_266555.1 71083835 3517891 complement(1101602..1102963) 1 NC_007205.1 cysteinyl-tRNA synthetase 1102963 cysS 3517891 cysS Candidatus Pelagibacter ubique HTCC1062 cysteinyl-tRNA synthetase YP_266555.1 1101602 R 335992 CDS YP_266556.1 71083836 3517892 complement(1103009..1103695) 1 NC_007205.1 NH(3)-dependent NAD+ synthetase NadE 1103695 nadE 3517892 nadE Candidatus Pelagibacter ubique HTCC1062 NH(3)-dependent NAD+ synthetase NadE YP_266556.1 1103009 R 335992 CDS YP_266557.1 71083837 3517855 complement(1103786..1105165) 1 NC_007205.1 2-dehydro-3-deoxyphosphooctonate aldolase 1105165 dhs 3517855 dhs Candidatus Pelagibacter ubique HTCC1062 2-dehydro-3-deoxyphosphooctonate aldolase YP_266557.1 1103786 R 335992 CDS YP_266558.1 71083838 3517856 complement(1105201..1107021) 1 NC_007205.1 glutamine-fructose-6-phosphate transaminase (isomerizing) 1107021 glmS 3517856 glmS Candidatus Pelagibacter ubique HTCC1062 glutamine-fructose-6-phosphate transaminase (isomerizing) YP_266558.1 1105201 R 335992 CDS YP_266559.1 71083839 3517857 complement(1107023..1107646) 1 NC_007205.1 UDP-N-acetylglucosamine diphosphorylase 1107646 glmU 3517857 glmU Candidatus Pelagibacter ubique HTCC1062 UDP-N-acetylglucosamine diphosphorylase YP_266559.1 1107023 R 335992 CDS YP_266560.1 71083840 3517858 1107717..1108406 1 NC_007205.1 phosphoglycolate phosphatase 1108406 gph 3517858 gph Candidatus Pelagibacter ubique HTCC1062 phosphoglycolate phosphatase YP_266560.1 1107717 D 335992 CDS YP_266561.1 71083841 3517859 1108457..1109959 1 NC_007205.1 2-methylcitrate dehydratase 1109959 prpD 3517859 prpD Candidatus Pelagibacter ubique HTCC1062 2-methylcitrate dehydratase YP_266561.1 1108457 D 335992 CDS YP_266562.1 71083842 3517860 1109959..1110855 1 NC_007205.1 hypothetical protein 1110855 prpB 3517860 prpB Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266562.1 1109959 D 335992 CDS YP_266563.1 71083843 3517861 1110855..1111979 1 NC_007205.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase 1111979 prpC 3517861 prpC Candidatus Pelagibacter ubique HTCC1062 citrate synthase YP_266563.1 1110855 D 335992 CDS YP_266564.1 71083844 3517862 complement(1111980..1112606) 1 NC_007205.1 methyltransferase 1112606 3517862 SAR11_1157 Candidatus Pelagibacter ubique HTCC1062 methyltransferase YP_266564.1 1111980 R 335992 CDS YP_266565.1 71083845 3517863 complement(1112611..1113624) 1 NC_007205.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1113624 nrdF 3517863 nrdF Candidatus Pelagibacter ubique HTCC1062 ribonucleotide-diphosphate reductase subunit beta YP_266565.1 1112611 R 335992 CDS YP_266566.1 71083846 3517864 complement(1113630..1115567) 1 NC_007205.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1115567 nrdA 3517864 nrdA Candidatus Pelagibacter ubique HTCC1062 ribonucleotide-diphosphate reductase subunit alpha YP_266566.1 1113630 R 335992 CDS YP_266567.1 71083847 3517865 1115724..1117178 1 NC_007205.1 phosphomannomutase 1117178 manB 3517865 manB Candidatus Pelagibacter ubique HTCC1062 phosphomannomutase YP_266567.1 1115724 D 335992 CDS YP_266568.1 71083848 3517866 1117162..1117443 1 NC_007205.1 hypothetical protein 1117443 3517866 SAR11_1728 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266568.1 1117162 D 335992 CDS YP_266569.1 71083849 3517867 complement(1117612..1118571) 1 NC_007205.1 ATPase involved in DNA repair; sbcC 1118571 sbcC 3517867 sbcC Candidatus Pelagibacter ubique HTCC1062 sbcC YP_266569.1 1117612 R 335992 CDS YP_266570.1 71083850 3517868 complement(1118568..1119218) 1 NC_007205.1 hypothetical protein 1119218 3517868 SAR11_1162 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266570.1 1118568 R 335992 CDS YP_266571.1 71083851 3517869 complement(1119467..1119844) 1 NC_007205.1 hypothetical protein 1119844 3517869 SAR11_1163 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266571.1 1119467 R 335992 CDS YP_266572.1 71083852 3517870 complement(1119848..1120411) 1 NC_007205.1 lipoprotein 1120411 3517870 SAR11_1164 Candidatus Pelagibacter ubique HTCC1062 lipoprotein YP_266572.1 1119848 R 335992 CDS YP_266573.1 71083853 3517871 1120857..1121216 1 NC_007205.1 exonuclease 1121216 3517871 SAR11_1165 Candidatus Pelagibacter ubique HTCC1062 exonuclease YP_266573.1 1120857 D 335992 CDS YP_266574.1 71083854 3517872 complement(1121220..1121555) 1 NC_007205.1 hypothetical protein 1121555 3517872 SAR11_1166 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266574.1 1121220 R 335992 CDS YP_266575.1 71083855 3517873 complement(1121545..1122273) 1 NC_007205.1 hypothetical protein 1122273 3517873 SAR11_1167 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266575.1 1121545 R 335992 CDS YP_266576.1 71083856 3517874 complement(1122281..1122634) 1 NC_007205.1 hypothetical protein 1122634 3517874 SAR11_1168 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266576.1 1122281 R 335992 CDS YP_266577.1 71083857 3517836 complement(1122717..1123616) 1 NC_007205.1 RecB and DNA/RNA helicase; hypothetical protein 1123616 3517836 SAR11_1169 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266577.1 1122717 R 335992 CDS YP_266578.1 71083858 3517837 complement(1123935..1124120) 1 NC_007205.1 hypothetical protein 1124120 3517837 SAR11_1170 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266578.1 1123935 R 335992 CDS YP_266579.1 71083859 3517838 complement(1124146..1125489) 1 NC_007205.1 oxidoreductase 1125489 ordL 3517838 ordL Candidatus Pelagibacter ubique HTCC1062 oxidoreductase YP_266579.1 1124146 R 335992 CDS YP_266580.1 71083860 3517839 complement(1125607..1126158) 1 NC_007205.1 OsmC-like protein 1126158 osmC 3517839 osmC Candidatus Pelagibacter ubique HTCC1062 OsmC-like protein YP_266580.1 1125607 R 335992 CDS YP_266581.1 71083861 3517840 complement(1126231..1127292) 1 NC_007205.1 similar to Oceanobacillus iheyensis HTE831 dbj|BAC12647.1; betaine-homocysteine methyltransferase 1127292 bhmT 3517840 bhmT Candidatus Pelagibacter ubique HTCC1062 betaine-homocysteine methyltransferase YP_266581.1 1126231 R 335992 CDS YP_266582.1 71083862 3517841 complement(1127554..1127718) 1 NC_007205.1 hypothetical protein 1127718 3517841 SAR11_1730 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266582.1 1127554 R 335992 CDS YP_266583.1 71083863 3517842 complement(1127719..1127925) 1 NC_007205.1 similar to COG5515: Uncharacterized conserved small protein; hypothetical protein 1127925 3517842 SAR11_1729 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266583.1 1127719 R 335992 CDS YP_266584.1 71083864 3517843 complement(1128011..1128691) 1 NC_007205.1 phosphate regulatory protein 1128691 phoB 3517843 phoB Candidatus Pelagibacter ubique HTCC1062 phosphate regulatory protein YP_266584.1 1128011 R 335992 CDS YP_266585.1 71083865 3517844 complement(1128691..1129389) 1 NC_007205.1 phosphate uptake regulatory protein PhoU 1129389 phoU 3517844 phoU Candidatus Pelagibacter ubique HTCC1062 phosphate uptake regulatory protein PhoU YP_266585.1 1128691 R 335992 CDS YP_266586.1 71083866 3517845 complement(1129392..1130159) 1 NC_007205.1 similar to ATP-binding protein Caulobacter crescentus CB15, pstB; phosphate ABC transporter 1130159 pstB 3517845 pstB Candidatus Pelagibacter ubique HTCC1062 phosphate ABC transporter YP_266586.1 1129392 R 335992 CDS YP_266587.1 71083867 3517846 complement(1130159..1131418) 1 NC_007205.1 ABC transporter 1131418 pstA 3517846 pstA Candidatus Pelagibacter ubique HTCC1062 ABC transporter YP_266587.1 1130159 R 335992 CDS YP_266588.1 71083868 3517847 complement(1131411..1132811) 1 NC_007205.1 ABC transporter 1132811 pstC 3517847 pstC Candidatus Pelagibacter ubique HTCC1062 ABC transporter YP_266588.1 1131411 R 335992 CDS YP_266589.1 71083869 3517848 complement(1132929..1133945) 1 NC_007205.1 periplasmic phosphate-binding protein PstS; phosphate ABC transporter 1133945 pstS 3517848 pstS Candidatus Pelagibacter ubique HTCC1062 phosphate ABC transporter YP_266589.1 1132929 R 335992 CDS YP_266590.1 71083870 3517849 complement(1134061..1135104) 1 NC_007205.1 two-component sensor histidine kinase, phoR Mesorhizobium loti; phosphate regulon 1135104 phoR 3517849 phoR Candidatus Pelagibacter ubique HTCC1062 phosphate regulon YP_266590.1 1134061 R 335992 CDS YP_266591.1 71083871 3517850 1135181..1136146 1 NC_007205.1 similar to Leptospira interrogans serovar lai str. 56601 gb|AAN50992.1; hypothetical protein 1136146 3517850 SAR11_1181 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266591.1 1135181 D 335992 CDS YP_266592.1 71083872 3517851 complement(1136254..1136418) 1 NC_007205.1 hypothetical protein 1136418 3517851 SAR11_1731 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266592.1 1136254 R 335992 CDS YP_266593.1 71083873 3517852 complement(1136415..1136597) 1 NC_007205.1 hypothetical protein 1136597 3517852 SAR11_1182 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266593.1 1136415 R 335992 CDS YP_266594.1 71083874 3517853 complement(1136605..1136979) 1 NC_007205.1 similar to COG2814: Arabinose efflux permease; hypothetical protein 1136979 3517853 SAR11_1183 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266594.1 1136605 R 335992 CDS YP_266595.1 71083875 3517854 complement(1137048..1137476) 1 NC_007205.1 cytochrome c 1137476 cytC 3517854 cytC Candidatus Pelagibacter ubique HTCC1062 cytochrome c YP_266595.1 1137048 R 335992 CDS YP_266596.1 71083876 3517816 1137555..1138439 1 NC_007205.1 hypothetical protein 1138439 3517816 SAR11_1185 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266596.1 1137555 D 335992 CDS YP_266597.1 71083877 3517817 complement(1138454..1138990) 1 NC_007205.1 similar to pentapeptide repeats protein from uncultured bacterium 314; hypothetical protein 1138990 3517817 SAR11_1186 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266597.1 1138454 R 335992 CDS YP_266598.1 71083878 3517818 complement(1139061..1140461) 1 NC_007205.1 glutamate dehydrogenase 1140461 gdhA 3517818 gdhA Candidatus Pelagibacter ubique HTCC1062 glutamate dehydrogenase YP_266598.1 1139061 R 335992 CDS YP_266599.1 71083879 3517819 complement(1140479..1140967) 1 NC_007205.1 hypothetical protein 1140967 3517819 SAR11_1188 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266599.1 1140479 R 335992 CDS YP_266600.1 71083880 3517820 complement(1140964..1141257) 1 NC_007205.1 hypothetical protein 1141257 3517820 SAR11_1189 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266600.1 1140964 R 335992 CDS YP_266601.1 71083881 3517821 complement(1141259..1142869) 1 NC_007205.1 sulfate permease family protein 1142869 3517821 SAR11_1190 Candidatus Pelagibacter ubique HTCC1062 sulfate permease family protein YP_266601.1 1141259 R 335992 CDS YP_266602.1 71083882 3517822 complement(1143032..1143436) 1 NC_007205.1 HIT domain-containing protein 1143436 3517822 SAR11_1191 Candidatus Pelagibacter ubique HTCC1062 HIT domain-containing protein YP_266602.1 1143032 R 335992 CDS YP_266603.1 71083883 3517823 complement(1143439..1144203) 1 NC_007205.1 hypothetical protein 1144203 3517823 SAR11_1192 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266603.1 1143439 R 335992 CDS YP_266604.1 71083884 3517824 complement(1144265..1145257) 1 NC_007205.1 tRNA-dihydrouridine synthase A 1145257 3517824 SAR11_1193 Candidatus Pelagibacter ubique HTCC1062 tRNA-dihydrouridine synthase A YP_266604.1 1144265 R 335992 CDS YP_266605.1 71083885 3517825 complement(1145280..1145822) 1 NC_007205.1 DNA-directed RNA polymerase subunit omega 1145822 rpoZ 3517825 rpoZ Candidatus Pelagibacter ubique HTCC1062 DNA-directed RNA polymerase subunit omega YP_266605.1 1145280 R 335992 CDS YP_266606.1 71083886 3517826 complement(1145866..1147074) 1 NC_007205.1 membrane permease 1147074 3517826 SAR11_1195 Candidatus Pelagibacter ubique HTCC1062 membrane permease YP_266606.1 1145866 R 335992 CDS YP_266607.1 71083887 3517827 1147089..1147955 1 NC_007205.1 3-hydroxyisobutyrate dehydrogenase 1147955 mmsB 3517827 mmsB Candidatus Pelagibacter ubique HTCC1062 3-hydroxyisobutyrate dehydrogenase YP_266607.1 1147089 D 335992 CDS YP_266608.1 71083888 3517828 1147962..1148561 1 NC_007205.1 flavin mononucleotide binding protein 1148561 3517828 SAR11_1197 Candidatus Pelagibacter ubique HTCC1062 flavin mononucleotide binding protein YP_266608.1 1147962 D 335992 CDS YP_266609.1 71083889 3517829 complement(1148558..1149070) 1 NC_007205.1 transferase 1149070 3517829 SAR11_1198 Candidatus Pelagibacter ubique HTCC1062 transferase YP_266609.1 1148558 R 335992 CDS YP_266610.1 71083890 3517830 1149091..1149645 1 NC_007205.1 similar to Nitrosomonas europaea ATCC 19718 emb|CAD84691.1; hypothetical protein 1149645 3517830 SAR11_1199 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266610.1 1149091 D 335992 CDS YP_266611.1 71083891 3517831 1149702..1150727 1 NC_007205.1 glycosyl transferase family protein 1150727 amsK 3517831 amsK Candidatus Pelagibacter ubique HTCC1062 glycosyl transferase family protein YP_266611.1 1149702 D 335992 CDS YP_266612.1 71083892 3517832 complement(1150724..1152226) 1 NC_007205.1 tricarboxylic transport protein TctA 1152226 tctA 3517832 tctA Candidatus Pelagibacter ubique HTCC1062 tricarboxylic transport protein TctA YP_266612.1 1150724 R 335992 CDS YP_266613.1 71083893 3517833 complement(1152223..1152693) 1 NC_007205.1 tricarboxylic transport tctB 1152693 tctB 3517833 tctB Candidatus Pelagibacter ubique HTCC1062 tricarboxylic transport tctB YP_266613.1 1152223 R 335992 CDS YP_266614.1 71083894 3517834 complement(1152723..1153703) 1 NC_007205.1 tricarboxylic transport protein TctC 1153703 tctC 3517834 tctC Candidatus Pelagibacter ubique HTCC1062 tricarboxylic transport protein TctC YP_266614.1 1152723 R 335992 CDS YP_266615.1 71083895 3517835 1153904..1155001 1 NC_007205.1 aidB (acyl-CoA) regulator; AbrB family transcriptional regulator 1155001 abrB 3517835 abrB Candidatus Pelagibacter ubique HTCC1062 AbrB family transcriptional regulator YP_266615.1 1153904 D 335992 CDS YP_266616.1 71083896 3517799 complement(1154993..1155925) 1 NC_007205.1 heptosyltransferase family protein 1155925 rfaF 3517799 rfaF Candidatus Pelagibacter ubique HTCC1062 heptosyltransferase family protein YP_266616.1 1154993 R 335992 CDS YP_266617.1 71083897 3517800 1155958..1156347 1 NC_007205.1 hypothetical protein 1156347 3517800 SAR11_1207 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266617.1 1155958 D 335992 CDS YP_266618.1 71083898 3517801 complement(1156341..1157015) 1 NC_007205.1 octopine-like transport system permease protein oocM 1157015 oocM 3517801 oocM Candidatus Pelagibacter ubique HTCC1062 octopine-like transport system permease protein oocM YP_266618.1 1156341 R 335992 CDS YP_266619.1 71083899 3517802 complement(1157015..1157707) 1 NC_007205.1 permease protein; ABC transporter 1157707 occQ 3517802 occQ Candidatus Pelagibacter ubique HTCC1062 ABC transporter YP_266619.1 1157015 R 335992 CDS YP_266620.1 71083900 3517803 complement(1157753..1158604) 1 NC_007205.1 periplasmic amino acid-binding protein; ABC transporter 1158604 occT 3517803 occT Candidatus Pelagibacter ubique HTCC1062 ABC transporter YP_266620.1 1157753 R 335992 CDS YP_266621.1 71083901 3517804 complement(1158666..1159706) 1 NC_007205.1 spermine/spermidine synthase 1159706 speE 3517804 speE Candidatus Pelagibacter ubique HTCC1062 spermine/spermidine synthase YP_266621.1 1158666 R 335992 CDS YP_266622.1 71083902 3517805 complement(1159819..1160343) 1 NC_007205.1 5'-methylthioadenosine nucleosidase 1160343 pfs 3517805 pfs Candidatus Pelagibacter ubique HTCC1062 5'-methylthioadenosine nucleosidase YP_266622.1 1159819 R 335992 CDS YP_266623.1 71083903 3517806 1160381..1160908 1 NC_007205.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1160908 apt 3517806 apt Candidatus Pelagibacter ubique HTCC1062 adenine phosphoribosyltransferase YP_266623.1 1160381 D 335992 CDS YP_266624.1 71083904 3517807 1160941..1162149 1 NC_007205.1 hypothetical protein 1162149 3517807 SAR11_1214 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266624.1 1160941 D 335992 CDS YP_266625.1 71083905 3517808 complement(1162229..1163071) 1 NC_007205.1 sulfotransferase domain-containing protein 1163071 3517808 SAR11_1215 Candidatus Pelagibacter ubique HTCC1062 sulfotransferase domain-containing protein YP_266625.1 1162229 R 335992 CDS YP_266626.1 71083906 3517810 1163669..1164238 1 NC_007205.1 fimbrial protein pilin 1164238 ecpD 3517810 ecpD Candidatus Pelagibacter ubique HTCC1062 fimbrial protein pilin YP_266626.1 1163669 D 335992 CDS YP_266627.1 71083907 3517811 1164385..1164786 1 NC_007205.1 globin family protein 1164786 glbN 3517811 glbN Candidatus Pelagibacter ubique HTCC1062 globin family protein YP_266627.1 1164385 D 335992 CDS YP_266628.1 71083908 3517812 1164991..1165692 1 NC_007205.1 sigma factor SigB regulation protein 1165692 sigB 3517812 sigB Candidatus Pelagibacter ubique HTCC1062 sigma factor SigB regulation protein YP_266628.1 1164991 D 335992 CDS YP_266629.1 71083909 3517813 1165696..1166454 1 NC_007205.1 fimbrial protein pilin 1166454 3517813 SAR11_1219 Candidatus Pelagibacter ubique HTCC1062 fimbrial protein pilin YP_266629.1 1165696 D 335992 CDS YP_266630.1 71083910 3517815 complement(1166737..1166964) 1 NC_007205.1 hypothetical protein 1166964 3517815 SAR11_1220 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266630.1 1166737 R 335992 CDS YP_266631.1 71083911 3517779 complement(1167006..1169450) 1 NC_007205.1 sarcosine dehydrogenase 1169450 3517779 SAR11_1221 Candidatus Pelagibacter ubique HTCC1062 sarcosine dehydrogenase YP_266631.1 1167006 R 335992 CDS YP_266632.1 71083912 3517780 complement(1169497..1169940) 1 NC_007205.1 cytochrome c' 1169940 cycA 3517780 cycA Candidatus Pelagibacter ubique HTCC1062 cytochrome c' YP_266632.1 1169497 R 335992 CDS YP_266633.1 71083913 3517781 1169944..1170486 1 NC_007205.1 cytochrome b561 family protein 1170486 3517781 SAR11_1223 Candidatus Pelagibacter ubique HTCC1062 cytochrome b561 family protein YP_266633.1 1169944 D 335992 CDS YP_266634.1 71083914 3517782 complement(1170490..1171194) 1 NC_007205.1 similar to Sinorhizobium meliloti pir||E95408; hypothetical protein 1171194 3517782 SAR11_1225 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266634.1 1170490 R 335992 CDS YP_266635.1 71083915 3517783 complement(1171170..1171739) 1 NC_007205.1 methyltransferase 1171739 3517783 SAR11_1226 Candidatus Pelagibacter ubique HTCC1062 methyltransferase YP_266635.1 1171170 R 335992 CDS YP_266636.1 71083916 3517784 1171935..1172888 1 NC_007205.1 ADP-ribosylglycohydrolase 1172888 3517784 SAR11_1227 Candidatus Pelagibacter ubique HTCC1062 ADP-ribosylglycohydrolase YP_266636.1 1171935 D 335992 CDS YP_266637.1 71083917 3517785 1172889..1174208 1 NC_007205.1 DNA-damage inducible protein F 1174208 dinF 3517785 dinF Candidatus Pelagibacter ubique HTCC1062 DNA-damage inducible protein F YP_266637.1 1172889 D 335992 CDS YP_266638.1 71083918 3517786 1174245..1175258 1 NC_007205.1 glyoxalase II; hydroxyacylglutathione hydrolase 1175258 3517786 SAR11_1229 Candidatus Pelagibacter ubique HTCC1062 hydroxyacylglutathione hydrolase YP_266638.1 1174245 D 335992 CDS YP_266639.1 71083919 3517787 complement(1175268..1175693) 1 NC_007205.1 hypothetical protein 1175693 3517787 SAR11_1230 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266639.1 1175268 R 335992 CDS YP_266640.1 71083920 3517788 complement(1175833..1176201) 1 NC_007205.1 thioredoxin 1176201 3517788 SAR11_1231 Candidatus Pelagibacter ubique HTCC1062 thioredoxin YP_266640.1 1175833 R 335992 CDS YP_266641.1 71083921 3517789 complement(1176246..1177139) 1 NC_007205.1 hypothetical protein 1177139 3517789 SAR11_1232 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266641.1 1176246 R 335992 CDS YP_266642.1 71083922 3517790 complement(1177163..1177438) 1 NC_007205.1 hypothetical protein 1177438 3517790 SAR11_1233 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266642.1 1177163 R 335992 CDS YP_266643.1 71083923 3517791 complement(1177480..1178178) 1 NC_007205.1 AzlC protein 1178178 azlC 3517791 azlC Candidatus Pelagibacter ubique HTCC1062 AzlC protein YP_266643.1 1177480 R 335992 CDS YP_266644.1 71083924 3517792 complement(1178198..1179256) 1 NC_007205.1 similar to ATP-binding protein Vibrio vulnificus YJ016 dbj|BAC95508.1; iron(III) ABC transporter 1179256 sfuA 3517792 sfuA Candidatus Pelagibacter ubique HTCC1062 iron(III) ABC transporter YP_266644.1 1178198 R 335992 CDS YP_266645.1 71083925 3517793 complement(1179261..1180877) 1 NC_007205.1 similar to permease protein VC0609 Vibrio cholerae; iron(III) ABC transporter 1180877 sfuB 3517793 sfuB Candidatus Pelagibacter ubique HTCC1062 iron(III) ABC transporter YP_266645.1 1179261 R 335992 CDS YP_266646.1 71083926 3517794 complement(1180952..1181971) 1 NC_007205.1 iron-uptake ABC transport system periplasmic iron-binding protein 1181971 sfuC 3517794 sfuC Candidatus Pelagibacter ubique HTCC1062 iron-uptake ABC transport system periplasmic iron-binding protein YP_266646.1 1180952 R 335992 CDS YP_266647.1 71083927 3517795 complement(1182072..1182365) 1 NC_007205.1 hypothetical protein 1182365 3517795 SAR11_1239 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266647.1 1182072 R 335992 CDS YP_266648.1 71083928 3517796 complement(1182407..1183681) 1 NC_007205.1 isocitrate lyase 1183681 aceA 3517796 aceA Candidatus Pelagibacter ubique HTCC1062 isocitrate lyase YP_266648.1 1182407 R 335992 CDS YP_266649.1 71083929 3517797 complement(1183727..1183888) 1 NC_007205.1 hypothetical protein 1183888 3517797 SAR11_1241 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266649.1 1183727 R 335992 CDS YP_266650.1 71083930 3517798 1184000..1185433 1 NC_007205.1 transcriptional regulator 1185433 3517798 SAR11_1242 Candidatus Pelagibacter ubique HTCC1062 transcriptional regulator YP_266650.1 1184000 D 335992 CDS YP_266651.1 71083931 3517760 complement(1185434..1186324) 1 NC_007205.1 transcriptional regulator 1186324 3517760 SAR11_1243 Candidatus Pelagibacter ubique HTCC1062 transcriptional regulator YP_266651.1 1185434 R 335992 CDS YP_266652.1 71083932 3517761 complement(1186325..1187326) 1 NC_007205.1 zinc-binding alcohol dehydrogenase 1187326 yhdH 3517761 yhdH Candidatus Pelagibacter ubique HTCC1062 zinc-binding alcohol dehydrogenase YP_266652.1 1186325 R 335992 CDS YP_266653.1 71083933 3517762 complement(1187347..1187955) 1 NC_007205.1 GTP cyclohydrolase I 1187955 folE 3517762 folE Candidatus Pelagibacter ubique HTCC1062 GTP cyclohydrolase I YP_266653.1 1187347 R 335992 CDS YP_266654.1 71083934 3517763 1188012..1188500 1 NC_007205.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 1188500 hisI 3517763 hisI Candidatus Pelagibacter ubique HTCC1062 phosphoribosyl-AMP cyclohydrolase YP_266654.1 1188012 D 335992 CDS YP_266655.1 71083935 3517764 1188501..1188875 1 NC_007205.1 similar to COG3651: Uncharacterized protein conserved in bacteria; hypothetical protein 1188875 3517764 SAR11_1247 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266655.1 1188501 D 335992 CDS YP_266656.1 71083936 3517765 complement(1188881..1189852) 1 NC_007205.1 hypothetical protein 1189852 3517765 SAR11_1248 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266656.1 1188881 R 335992 CDS YP_266657.1 71083937 3517766 1189957..1190175 1 NC_007205.1 hypothetical protein 1190175 3517766 SAR11_1249 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266657.1 1189957 D 335992 CDS YP_266658.1 71083938 3517767 complement(1190176..1191780) 1 NC_007205.1 electron transfer flavoprotein-ubiquinone oxidoreductase 1191780 3517767 SAR11_1250 Candidatus Pelagibacter ubique HTCC1062 electron transfer flavoprotein-ubiquinone oxidoreductase YP_266658.1 1190176 R 335992 CDS YP_266659.1 71083939 3517768 complement(1191819..1192772) 1 NC_007205.1 electron transfer flavoprotein subunit alpha 1192772 etfA 3517768 etfA Candidatus Pelagibacter ubique HTCC1062 electron transfer flavoprotein subunit alpha YP_266659.1 1191819 R 335992 CDS YP_266660.1 71083940 3517769 complement(1192772..1193521) 1 NC_007205.1 electron transfer flavoprotein subunit beta 1193521 etfB 3517769 etfB Candidatus Pelagibacter ubique HTCC1062 electron transfer flavoprotein subunit beta YP_266660.1 1192772 R 335992 CDS YP_266661.1 71083941 3517770 complement(1193521..1195953) 1 NC_007205.1 similar to mitochondrial precursor (me2glydh) - Agrobacterium tumefaciens; dimethylglycine dehydrogenase 1195953 3517770 SAR11_1253 Candidatus Pelagibacter ubique HTCC1062 dimethylglycine dehydrogenase YP_266661.1 1193521 R 335992 CDS YP_266662.1 71083942 3517771 complement(1196013..1196492) 1 NC_007205.1 hypothetical protein 1196492 3517771 SAR11_1254 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266662.1 1196013 R 335992 CDS YP_266663.1 71083943 3517772 complement(1196458..1197027) 1 NC_007205.1 similar to YabF family Clostridium acetobutylicum pir||B96902 probable NADP; NADPH-quinone reductase 1197027 3517772 SAR11_1255 Candidatus Pelagibacter ubique HTCC1062 NADPH-quinone reductase YP_266663.1 1196458 R 335992 CDS YP_266664.1 71083944 3517773 1197066..1197263 1 NC_007205.1 hypothetical protein 1197263 3517773 SAR11_1256 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266664.1 1197066 D 335992 CDS YP_266665.1 71083945 3517774 complement(1197221..1197643) 1 NC_007205.1 similar to COG2391: Predicted transporter component; hypothetical protein 1197643 3517774 SAR11_1257 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266665.1 1197221 R 335992 CDS YP_266666.1 71083946 3517775 complement(1197640..1198059) 1 NC_007205.1 hypothetical protein 1198059 yeeE 3517775 yeeE Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266666.1 1197640 R 335992 CDS YP_266667.1 71083947 3517776 complement(1198060..1198497) 1 NC_007205.1 hypothetical protein 1198497 met17 3517776 met17 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266667.1 1198060 R 335992 CDS YP_266668.1 71083948 3517777 complement(1198497..1199282) 1 NC_007205.1 enoyl-CoA hydratase 1199282 ydbS 3517777 ydbS Candidatus Pelagibacter ubique HTCC1062 enoyl-CoA hydratase YP_266668.1 1198497 R 335992 CDS YP_266669.1 71083949 3517778 complement(1199266..1199640) 1 NC_007205.1 cytidylyltransferase 1199640 3517778 SAR11_1261 Candidatus Pelagibacter ubique HTCC1062 cytidylyltransferase YP_266669.1 1199266 R 335992 CDS YP_266670.1 71083950 3516790 complement(1199640..1200047) 1 NC_007205.1 adenylylsulfate kinase 1200047 cysC 3516790 cysC Candidatus Pelagibacter ubique HTCC1062 adenylylsulfate kinase YP_266670.1 1199640 R 335992 CDS YP_266671.1 71083951 3516791 complement(1200049..1201242) 1 NC_007205.1 dioxygenase subunit alpha 1201242 3516791 SAR11_1263 Candidatus Pelagibacter ubique HTCC1062 dioxygenase subunit alpha YP_266671.1 1200049 R 335992 CDS YP_266672.1 71083952 3516792 1201343..1202071 1 NC_007205.1 methylenetetrahydrofolate reductase 1202071 metF 3516792 metF Candidatus Pelagibacter ubique HTCC1062 methylenetetrahydrofolate reductase YP_266672.1 1201343 D 335992 CDS YP_266673.1 71083953 3516793 1202064..1203422 1 NC_007205.1 glycine cleavage system protein T 1203422 3516793 SAR11_1265 Candidatus Pelagibacter ubique HTCC1062 glycine cleavage system protein T YP_266673.1 1202064 D 335992 CDS YP_266674.1 71083954 3516794 1203572..1204117 1 NC_007205.1 hypothetical protein 1204117 3516794 SAR11_1266 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266674.1 1203572 D 335992 CDS YP_266675.1 71083955 3516795 complement(1204114..1204284) 1 NC_007205.1 hypothetical protein 1204284 3516795 SAR11_1267 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266675.1 1204114 R 335992 CDS YP_266676.1 71083956 3516796 complement(1204277..1204888) 1 NC_007205.1 hypothetical protein 1204888 3516796 SAR11_1268 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266676.1 1204277 R 335992 CDS YP_266677.1 71083957 3516797 complement(1204894..1206546) 1 NC_007205.1 similar to Pseudomonas putida KT2440 gb|AAN68299.1; hypothetical protein 1206546 3516797 SAR11_1269 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266677.1 1204894 R 335992 CDS YP_266678.1 71083958 3516798 complement(1206543..1207514) 1 NC_007205.1 dipeptidase 1207514 3516798 SAR11_1270 Candidatus Pelagibacter ubique HTCC1062 dipeptidase YP_266678.1 1206543 R 335992 CDS YP_266679.1 71083959 3516799 1207629..1208120 1 NC_007205.1 phosphoribosylaminoimidazole carboxylase catalytic chain 1208120 3516799 SAR11_1271 Candidatus Pelagibacter ubique HTCC1062 phosphoribosylaminoimidazole carboxylase catalytic chain YP_266679.1 1207629 D 335992 CDS YP_266680.1 71083960 3516800 1208130..1209176 1 NC_007205.1 phosphoribosylaminoimidazole carboxylase ATPase chain 1209176 purE 3516800 purE Candidatus Pelagibacter ubique HTCC1062 phosphoribosylaminoimidazole carboxylase ATPase chain YP_266680.1 1208130 D 335992 CDS YP_266681.1 71083961 3516801 1209188..1209655 1 NC_007205.1 acetyltransferase 1209655 3516801 SAR11_1273 Candidatus Pelagibacter ubique HTCC1062 acetyltransferase YP_266681.1 1209188 D 335992 CDS YP_266682.1 71083962 3516802 1209774..1209980 1 NC_007205.1 cold shock DNA-binding domain-containing protein 1209980 cspL 3516802 cspL Candidatus Pelagibacter ubique HTCC1062 cold shock DNA-binding domain-containing protein YP_266682.1 1209774 D 335992 CDS YP_266683.1 71083963 3516803 complement(1210062..1210796) 1 NC_007205.1 alpha/beta hydrolase 1210796 3516803 SAR11_1275 Candidatus Pelagibacter ubique HTCC1062 alpha/beta hydrolase YP_266683.1 1210062 R 335992 CDS YP_266684.1 71083964 3516804 1210949..1211227 1 NC_007205.1 hypothetical protein 1211227 3516804 SAR11_1276 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266684.1 1210949 D 335992 CDS YP_266685.1 71083965 3516805 1211265..1212011 1 NC_007205.1 similar to Swiss-Prot Accession Number P29079; aspartate racemase 1212011 racX 3516805 racX Candidatus Pelagibacter ubique HTCC1062 aspartate racemase YP_266685.1 1211265 D 335992 CDS YP_266686.1 71083966 3516806 1212015..1212455 1 NC_007205.1 hypothetical protein 1212455 3516806 SAR11_1278 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266686.1 1212015 D 335992 CDS YP_266687.1 71083967 3516807 complement(1212445..1212756) 1 NC_007205.1 hypothetical protein 1212756 3516807 SAR11_1279 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266687.1 1212445 R 335992 CDS YP_266688.1 71083968 3516808 1212866..1213717 1 NC_007205.1 similar to probable integral membrane protein Mesorhizobium loti dbj|BAB50359.1; hypothetical protein 1213717 3516808 SAR11_1280 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266688.1 1212866 D 335992 CDS YP_266689.1 71083969 3516809 complement(1213722..1214309) 1 NC_007205.1 gamma subunit family; sarcosine oxidase 1214309 soxG2 3516809 soxG2 Candidatus Pelagibacter ubique HTCC1062 sarcosine oxidase YP_266689.1 1213722 R 335992 CDS YP_266690.1 71083970 3517319 complement(1214306..1217302) 1 NC_007205.1 sarcosine oxidase subunit alpha 1217302 soxA2 3517319 soxA2 Candidatus Pelagibacter ubique HTCC1062 sarcosine oxidase subunit alpha YP_266690.1 1214306 R 335992 CDS YP_266691.1 71083971 3517320 complement(1217304..1217570) 1 NC_007205.1 sarcosine oxidase subunit delta 1217570 soxD2 3517320 soxD2 Candidatus Pelagibacter ubique HTCC1062 sarcosine oxidase subunit delta YP_266691.1 1217304 R 335992 CDS YP_266692.1 71083972 3517321 complement(1217571..1218827) 1 NC_007205.1 sarcosine oxidase subunit beta 1218827 soxB2 3517321 soxB2 Candidatus Pelagibacter ubique HTCC1062 sarcosine oxidase subunit beta YP_266692.1 1217571 R 335992 CDS YP_266693.1 71083973 3517322 1218954..1220639 1 NC_007205.1 formate-tetrahydrofolate ligase 1220639 fhs 3517322 fhs Candidatus Pelagibacter ubique HTCC1062 formate-tetrahydrofolate ligase YP_266693.1 1218954 D 335992 CDS YP_266694.1 71083974 3517323 complement(1220643..1221434) 1 NC_007205.1 glutamine amidotransferase 1221434 3517323 SAR11_1286 Candidatus Pelagibacter ubique HTCC1062 glutamine amidotransferase YP_266694.1 1220643 R 335992 CDS YP_266695.1 71083975 3517324 complement(1221431..1222597) 1 NC_007205.1 iron-containing alcohol dehydrogenase 1222597 3517324 SAR11_1287 Candidatus Pelagibacter ubique HTCC1062 iron-containing alcohol dehydrogenase YP_266695.1 1221431 R 335992 CDS YP_266696.1 71083976 3517325 1222669..1224045 1 NC_007205.1 aldehyde dehydrogenase 1224045 ssdH 3517325 ssdH Candidatus Pelagibacter ubique HTCC1062 aldehyde dehydrogenase YP_266696.1 1222669 D 335992 CDS YP_266697.1 71083977 3517326 1224047..1224802 1 NC_007205.1 short chain dehydrogenase 1224802 3517326 SAR11_1289 Candidatus Pelagibacter ubique HTCC1062 short chain dehydrogenase YP_266697.1 1224047 D 335992 CDS YP_266698.1 71083978 3517327 complement(1224850..1225926) 1 NC_007205.1 similar to COG4663: TRAP-type mannitol/chloroaromatic compound transport system; TRAP-type extracellular solute-binding protein 1225926 3517327 SAR11_1290 Candidatus Pelagibacter ubique HTCC1062 TRAP-type extracellular solute-binding protein YP_266698.1 1224850 R 335992 CDS YP_266699.1 71083979 3517328 complement(1226064..1227395) 1 NC_007205.1 TrapT family, dctM subunit; TrapT family protein 1227395 dctM 3517328 dctM Candidatus Pelagibacter ubique HTCC1062 TrapT family protein YP_266699.1 1226064 R 335992 CDS YP_266700.1 71083980 3517329 complement(1227395..1227904) 1 NC_007205.1 tripartite ATP-independent periplasmic 1227904 dctQ 3517329 dctQ Candidatus Pelagibacter ubique HTCC1062 tripartite ATP-independent periplasmic YP_266700.1 1227395 R 335992 CDS YP_266701.1 71083981 3517330 complement(1227911..1228105) 1 NC_007205.1 hypothetical protein 1228105 3517330 SAR11_1294 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266701.1 1227911 R 335992 CDS YP_266702.1 71083982 3517331 complement(1228099..1229127) 1 NC_007205.1 glycerol-3-phosphate dehydrogenase 1229127 gpsA 3517331 gpsA Candidatus Pelagibacter ubique HTCC1062 glycerol-3-phosphate dehydrogenase YP_266702.1 1228099 R 335992 CDS YP_266703.1 71083983 3517332 1229207..1230538 1 NC_007205.1 flavin-containing monooxygenase 1230538 3517332 SAR11_1296 Candidatus Pelagibacter ubique HTCC1062 flavin-containing monooxygenase YP_266703.1 1229207 D 335992 CDS YP_266704.1 71083984 3517333 complement(1230571..1232724) 1 NC_007205.1 glycine betaine/L-proline transport system permease 1232724 opuAB 3517333 opuAB Candidatus Pelagibacter ubique HTCC1062 glycine betaine/L-proline transport system permease YP_266704.1 1230571 R 335992 CDS YP_266705.1 71083985 3517334 complement(1232734..1233759) 1 NC_007205.1 glycine betaine/l-proline transport ATP-binding protein 1233759 opuAA 3517334 opuAA Candidatus Pelagibacter ubique HTCC1062 glycine betaine/l-proline transport ATP-binding protein YP_266705.1 1232734 R 335992 CDS YP_266706.1 71083986 3517335 complement(1233832..1234380) 1 NC_007205.1 hypothetical protein 1234380 3517335 SAR11_1299 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266706.1 1233832 R 335992 CDS YP_266707.1 71083987 3517336 complement(1234392..1234769) 1 NC_007205.1 MORN repeat-containing protein 1234769 3517336 SAR11_1300 Candidatus Pelagibacter ubique HTCC1062 MORN repeat-containing protein YP_266707.1 1234392 R 335992 CDS YP_266708.1 71083988 3517337 complement(1234804..1235283) 1 NC_007205.1 hypothetical protein 1235283 3517337 SAR11_1301 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266708.1 1234804 R 335992 CDS YP_266709.1 71083989 3517489 complement(1235374..1236318) 1 NC_007205.1 substrate-binding region of ABC-type glycine betaine transport system 1236318 opuAC 3517489 opuAC Candidatus Pelagibacter ubique HTCC1062 substrate-binding region of ABC-type glycine betaine transport system YP_266709.1 1235374 R 335992 CDS YP_266710.1 71083990 3517490 1236434..1238761 1 NC_007205.1 glycine cleavage system protein T 1238761 3517490 SAR11_1303 Candidatus Pelagibacter ubique HTCC1062 glycine cleavage system protein T YP_266710.1 1236434 D 335992 CDS YP_266711.1 71083991 3517491 1238765..1239115 1 NC_007205.1 50S ribosomal protein L6 1239115 rpl6e 3517491 rpl6e Candidatus Pelagibacter ubique HTCC1062 50S ribosomal protein L6 YP_266711.1 1238765 D 335992 CDS YP_266712.1 71083992 3517492 1239215..1240543 1 NC_007205.1 monomeric sarcosine oxidase 1240543 3517492 SAR11_1304 Candidatus Pelagibacter ubique HTCC1062 monomeric sarcosine oxidase YP_266712.1 1239215 D 335992 CDS YP_266713.1 71083993 3517493 1240616..1242085 1 NC_007205.1 GlnT-like protein 1242085 3517493 SAR11_1305 Candidatus Pelagibacter ubique HTCC1062 GlnT-like protein YP_266713.1 1240616 D 335992 CDS YP_266714.1 71083994 3517494 1242110..1243054 1 NC_007205.1 glutamine amidotransferase-like protein 1243054 3517494 SAR11_1306 Candidatus Pelagibacter ubique HTCC1062 glutamine amidotransferase-like protein YP_266714.1 1242110 D 335992 CDS YP_266715.1 71083995 3517495 1243042..1243896 1 NC_007205.1 GXGXG motif-containing protein 1243896 3517495 SAR11_1307 Candidatus Pelagibacter ubique HTCC1062 GXGXG motif-containing protein YP_266715.1 1243042 D 335992 CDS YP_266716.1 71083996 3517496 1243896..1245320 1 NC_007205.1 GlxD-like protein; glutamate synthase large subunit-like protein 1245320 3517496 SAR11_1308 Candidatus Pelagibacter ubique HTCC1062 glutamate synthase large subunit-like protein YP_266716.1 1243896 D 335992 CDS YP_266717.1 71083997 3517497 1245330..1245731 1 NC_007205.1 hypothetical protein 1245731 3517497 SAR11_1309 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266717.1 1245330 D 335992 CDS YP_266718.1 71083998 3517498 1245857..1247257 1 NC_007205.1 ammonium transporter 1247257 amt 3517498 amt Candidatus Pelagibacter ubique HTCC1062 ammonium transporter YP_266718.1 1245857 D 335992 CDS YP_266719.1 71083999 3517499 1247269..1247493 1 NC_007205.1 hypothetical protein 1247493 3517499 SAR11_1311 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266719.1 1247269 D 335992 CDS YP_266720.1 71084000 3517500 1247554..1247706 1 NC_007205.1 hypothetical protein 1247706 3517500 SAR11_1312 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266720.1 1247554 D 335992 CDS YP_266721.1 71084001 3517501 1247719..1248597 1 NC_007205.1 glutamine amidotransferase-like protein glxB 1248597 glxB 3517501 glxB Candidatus Pelagibacter ubique HTCC1062 glutamine amidotransferase-like protein glxB YP_266721.1 1247719 D 335992 CDS YP_266722.1 71084002 3517502 1248601..1249281 1 NC_007205.1 GXGXG motif; GlxC protein 1249281 glxC 3517502 glxC Candidatus Pelagibacter ubique HTCC1062 GlxC protein YP_266722.1 1248601 D 335992 CDS YP_266723.1 71084003 3517503 1249284..1250600 1 NC_007205.1 glutamate synthase large subunit 1250600 glxD 3517503 glxD Candidatus Pelagibacter ubique HTCC1062 glutamate synthase large subunit YP_266723.1 1249284 D 335992 CDS YP_266724.1 71084004 3517504 1250644..1251969 1 NC_007205.1 glutamine synthetase 1251969 glnT 3517504 glnT Candidatus Pelagibacter ubique HTCC1062 glutamine synthetase YP_266724.1 1250644 D 335992 CDS YP_266725.1 71084005 3517505 1251973..1253115 1 NC_007205.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 1253115 ygeX 3517505 ygeX Candidatus Pelagibacter ubique HTCC1062 diaminopropionate ammonia-lyase YP_266725.1 1251973 D 335992 CDS YP_266726.1 71084006 3517506 1253122..1254543 1 NC_007205.1 deoxyribodipyrimidine photo-lyase 1254543 phrB 3517506 phrB Candidatus Pelagibacter ubique HTCC1062 deoxyribodipyrimidine photo-lyase YP_266726.1 1253122 D 335992 CDS YP_266727.1 71084007 3517507 complement(1254540..1254959) 1 NC_007205.1 hypothetical protein 1254959 3517507 SAR11_1319 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266727.1 1254540 R 335992 CDS YP_266728.1 71084008 3517508 complement(1254956..1255816) 1 NC_007205.1 AFG1-like ATPase 1255816 3517508 SAR11_1320 Candidatus Pelagibacter ubique HTCC1062 AFG1-like ATPase YP_266728.1 1254956 R 335992 CDS YP_266729.1 71084009 3517509 complement(1256001..1256438) 1 NC_007205.1 hypothetical protein 1256438 3517509 SAR11_1321 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266729.1 1256001 R 335992 CDS YP_266730.1 71084010 3517510 complement(1256441..1257742) 1 NC_007205.1 PQQ repeat-containing protein 1257742 3517510 SAR11_1322 Candidatus Pelagibacter ubique HTCC1062 PQQ repeat-containing protein YP_266730.1 1256441 R 335992 CDS YP_266731.1 71084011 3517511 complement(1257732..1258376) 1 NC_007205.1 hypothetical protein 1258376 3517511 SAR11_1323 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266731.1 1257732 R 335992 CDS YP_266732.1 71084012 3517512 complement(1258379..1261048) 1 NC_007205.1 aconitate hydratase 1261048 acnA 3517512 acnA Candidatus Pelagibacter ubique HTCC1062 aconitate hydratase YP_266732.1 1258379 R 335992 CDS YP_266733.1 71084013 3517513 complement(1261054..1261641) 1 NC_007205.1 LysE family; transporter 1261641 yfiK 3517513 yfiK Candidatus Pelagibacter ubique HTCC1062 transporter YP_266733.1 1261054 R 335992 CDS YP_266734.1 71084014 3517514 complement(1261647..1261988) 1 NC_007205.1 CsaA protein 1261988 csaA 3517514 csaA Candidatus Pelagibacter ubique HTCC1062 CsaA protein YP_266734.1 1261647 R 335992 CDS YP_266735.1 71084015 3517515 1262016..1263206 1 NC_007205.1 acetylornithine deacetylase 1263206 argE 3517515 argE Candidatus Pelagibacter ubique HTCC1062 acetylornithine deacetylase YP_266735.1 1262016 D 335992 CDS YP_266736.1 71084016 3517516 complement(1263228..1264664) 1 NC_007205.1 aldehyde dehydrogenase 1264664 3517516 SAR11_1328 Candidatus Pelagibacter ubique HTCC1062 aldehyde dehydrogenase YP_266736.1 1263228 R 335992 CDS YP_266737.1 71084017 3517517 complement(1264679..1265644) 1 NC_007205.1 agmatinase 1265644 speB 3517517 speB Candidatus Pelagibacter ubique HTCC1062 agmatinase YP_266737.1 1264679 R 335992 CDS YP_266738.1 71084018 3517518 1265702..1266439 1 NC_007205.1 lipoprotein 1266439 3517518 SAR11_1330 Candidatus Pelagibacter ubique HTCC1062 lipoprotein YP_266738.1 1265702 D 335992 CDS YP_266739.1 71084019 3517519 1266439..1267083 1 NC_007205.1 peptidylprolyl cis-trans isomerase 1267083 ppiA 3517519 ppiA Candidatus Pelagibacter ubique HTCC1062 peptidylprolyl cis-trans isomerase YP_266739.1 1266439 D 335992 CDS YP_266740.1 71084020 3517520 1267165..1268373 1 NC_007205.1 hypothetical protein 1268373 3517520 SAR11_1332 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266740.1 1267165 D 335992 CDS YP_266741.1 71084021 3517521 complement(1268370..1270592) 1 NC_007205.1 3-hydroxyacyl-CoA dehydrogenase 1270592 fadB 3517521 fadB Candidatus Pelagibacter ubique HTCC1062 3-hydroxyacyl-CoA dehydrogenase YP_266741.1 1268370 R 335992 CDS YP_266742.1 71084022 3517522 complement(1270649..1271503) 1 NC_007205.1 spermidine/putrescine transport system permease protein potc 1271503 potC 3517522 potC Candidatus Pelagibacter ubique HTCC1062 spermidine/putrescine transport system permease protein potc YP_266742.1 1270649 R 335992 CDS YP_266743.1 71084023 3517523 complement(1271507..1272754) 1 NC_007205.1 spermidine/putrescine transport system permease protein potb 1272754 potB 3517523 potB Candidatus Pelagibacter ubique HTCC1062 spermidine/putrescine transport system permease protein potb YP_266743.1 1271507 R 335992 CDS YP_266744.1 71084024 3517524 complement(1272839..1273960) 1 NC_007205.1 spermidine/putrescine-binding periplasmic protein 1273960 potD 3517524 potD Candidatus Pelagibacter ubique HTCC1062 spermidine/putrescine-binding periplasmic protein YP_266744.1 1272839 R 335992 CDS YP_266745.1 71084025 3517525 complement(1274095..1275183) 1 NC_007205.1 spermidine/putrescine transport ATP-binding protein pota 1275183 potA 3517525 potA Candidatus Pelagibacter ubique HTCC1062 spermidine/putrescine transport ATP-binding protein pota YP_266745.1 1274095 R 335992 CDS YP_266746.1 71084026 3517526 complement(1275242..1276408) 1 NC_007205.1 X-Pro dipeptidase 1276408 y4tM 3517526 y4tM Candidatus Pelagibacter ubique HTCC1062 X-Pro dipeptidase YP_266746.1 1275242 R 335992 CDS YP_266747.1 71084027 3517527 complement(1276409..1277155) 1 NC_007205.1 racemase 1277155 3517527 SAR11_1339 Candidatus Pelagibacter ubique HTCC1062 racemase YP_266747.1 1276409 R 335992 CDS YP_266748.1 71084028 3517038 1277497..1278489 1 NC_007205.1 luciferase-like monooxygenase 1278489 3517038 SAR11_1340 Candidatus Pelagibacter ubique HTCC1062 luciferase-like monooxygenase YP_266748.1 1277497 D 335992 CDS YP_266749.1 71084029 3517039 1278489..1279076 1 NC_007205.1 hypothetical protein 1279076 3517039 SAR11_1341 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266749.1 1278489 D 335992 CDS YP_266750.1 71084030 3517040 1279081..1279863 1 NC_007205.1 alpha/beta hydrolase 1279863 3517040 SAR11_1342 Candidatus Pelagibacter ubique HTCC1062 alpha/beta hydrolase YP_266750.1 1279081 D 335992 CDS YP_266751.1 71084031 3517041 1279864..1281345 1 NC_007205.1 betaine-aldehyde dehydrogenase 1281345 dhaS 3517041 dhaS Candidatus Pelagibacter ubique HTCC1062 betaine-aldehyde dehydrogenase YP_266751.1 1279864 D 335992 CDS YP_266752.1 71084032 3517042 1281350..1282207 1 NC_007205.1 hypothetical protein 1282207 3517042 SAR11_1344 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266752.1 1281350 D 335992 CDS YP_266753.1 71084033 3517043 1282283..1283467 1 NC_007205.1 similar to COG0683: ABC-type branched-chain amino acid transport systems, periplasmic component; hypothetical protein 1283467 livJ 3517043 livJ Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266753.1 1282283 D 335992 CDS YP_266754.1 71084034 3517044 complement(1283524..1284285) 1 NC_007205.1 similar to COG0730: Predicted permeases; hypothetical protein 1284285 3517044 SAR11_1347 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266754.1 1283524 R 335992 CDS YP_266755.1 71084035 3517045 complement(1284287..1285450) 1 NC_007205.1 hypothetical protein 1285450 3517045 SAR11_1348 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266755.1 1284287 R 335992 CDS YP_266756.1 71084036 3517046 complement(1285527..1286858) 1 NC_007205.1 branched chain amino acid ABC transporter permease 1286858 livM 3517046 livM Candidatus Pelagibacter ubique HTCC1062 branched chain amino acid ABC transporter permease YP_266756.1 1285527 R 335992 CDS YP_266757.1 71084037 3517047 complement(1286894..1287904) 1 NC_007205.1 branched chain amino acid ABC transporter permease 1287904 livH 3517047 livH Candidatus Pelagibacter ubique HTCC1062 branched chain amino acid ABC transporter permease YP_266757.1 1286894 R 335992 CDS YP_266758.1 71084038 3517048 complement(1287906..1288613) 1 NC_007205.1 branched-chain amino acid ABC transporter ATP-binding protein 1288613 livF 3517048 livF Candidatus Pelagibacter ubique HTCC1062 branched-chain amino acid ABC transporter ATP-binding protein YP_266758.1 1287906 R 335992 CDS YP_266759.1 71084039 3517049 complement(1288613..1289407) 1 NC_007205.1 ABC transporter ATP-binding protein 1289407 livG 3517049 livG Candidatus Pelagibacter ubique HTCC1062 ABC transporter ATP-binding protein YP_266759.1 1288613 R 335992 CDS YP_266760.1 71084040 3517050 complement(1289413..1290180) 1 NC_007205.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 1290180 3517050 SAR11_1353 Candidatus Pelagibacter ubique HTCC1062 pyrroline-5-carboxylate reductase YP_266760.1 1289413 R 335992 CDS YP_266761.1 71084041 3517051 complement(1290213..1291124) 1 NC_007205.1 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein 1291124 gab 3517051 gab Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266761.1 1290213 R 335992 CDS YP_266762.1 71084042 3517052 complement(1291124..1291447) 1 NC_007205.1 hypothetical protein 1291447 3517052 SAR11_1355 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266762.1 1291124 R 335992 CDS YP_266763.1 71084043 3517053 complement(1291437..1292141) 1 NC_007205.1 hypothetical protein 1292141 3517053 SAR11_1356 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266763.1 1291437 R 335992 CDS YP_266764.2 304570563 3517054 complement(1292141..1292926) 1 NC_007205.1 branched-chain amino acid ABC transporter ATP-binding protein 1292926 livF2 3517054 livF2 Candidatus Pelagibacter ubique HTCC1062 branched-chain amino acid ABC transporter ATP-binding protein YP_266764.2 1292141 R 335992 CDS YP_266765.1 71084045 3517055 complement(1292926..1293666) 1 NC_007205.1 ABC transporter ATP-binding protein 1293666 livG2 3517055 livG2 Candidatus Pelagibacter ubique HTCC1062 ABC transporter ATP-binding protein YP_266765.1 1292926 R 335992 CDS YP_266766.1 71084046 3517056 complement(1293666..1294694) 1 NC_007205.1 high-affinity branched-chain amino acid transport permease 1294694 livM2 3517056 livM2 Candidatus Pelagibacter ubique HTCC1062 high-affinity branched-chain amino acid transport permease YP_266766.1 1293666 R 335992 CDS YP_266767.1 71084047 3517057 complement(1294718..1295578) 1 NC_007205.1 high-affinity branched-chain amino acid transport permease 1295578 livH2 3517057 livH2 Candidatus Pelagibacter ubique HTCC1062 high-affinity branched-chain amino acid transport permease YP_266767.1 1294718 R 335992 CDS YP_266768.1 71084048 3517459 complement(1295676..1296917) 1 NC_007205.1 Leu/Ile/Val-binding protein precursor 1296917 livJ2 3517459 livJ2 Candidatus Pelagibacter ubique HTCC1062 Leu/Ile/Val-binding protein precursor YP_266768.1 1295676 R 335992 CDS YP_266769.1 71084049 3517460 complement(1297008..1297622) 1 NC_007205.1 possible threonine efflux pump; LysE type translocator 1297622 rhtB 3517460 rhtB Candidatus Pelagibacter ubique HTCC1062 LysE type translocator YP_266769.1 1297008 R 335992 CDS YP_266770.1 71084050 3517461 1297756..1298052 1 NC_007205.1 hypothetical protein 1298052 3517461 SAR11_1363 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266770.1 1297756 D 335992 CDS YP_266771.1 71084051 3517462 1298056..1298310 1 NC_007205.1 glutaredoxin 1298310 3517462 SAR11_1364 Candidatus Pelagibacter ubique HTCC1062 glutaredoxin YP_266771.1 1298056 D 335992 CDS YP_266772.1 71084052 3517463 complement(1298312..1298686) 1 NC_007205.1 SelR domain-containing protein 1298686 3517463 SAR11_1365 Candidatus Pelagibacter ubique HTCC1062 SelR domain-containing protein YP_266772.1 1298312 R 335992 CDS YP_266773.1 71084053 3517464 complement(1298690..1299640) 1 NC_007205.1 phosphoglycerate dehydrogenase 1299640 serA 3517464 serA Candidatus Pelagibacter ubique HTCC1062 phosphoglycerate dehydrogenase YP_266773.1 1298690 R 335992 CDS YP_266774.1 71084054 3517465 complement(1299633..1300532) 1 NC_007205.1 transporter 1300532 3517465 SAR11_1367 Candidatus Pelagibacter ubique HTCC1062 transporter YP_266774.1 1299633 R 335992 CDS YP_266775.1 71084055 3517466 complement(1300533..1301774) 1 NC_007205.1 D-amino-acid dehydrogenase 1301774 dadA 3517466 dadA Candidatus Pelagibacter ubique HTCC1062 D-amino-acid dehydrogenase YP_266775.1 1300533 R 335992 CDS YP_266776.1 71084056 3517467 complement(1301843..1302964) 1 NC_007205.1 rod shape-determining protein RodA 1302964 rodA 3517467 rodA Candidatus Pelagibacter ubique HTCC1062 rod shape-determining protein RodA YP_266776.1 1301843 R 335992 CDS YP_266777.1 71084057 3517468 complement(1302965..1304932) 1 NC_007205.1 penicillin binding protein transpeptide 1304932 pbpA 3517468 pbpA Candidatus Pelagibacter ubique HTCC1062 penicillin binding protein transpeptide YP_266777.1 1302965 R 335992 CDS YP_266778.1 71084058 3517469 complement(1304922..1305443) 1 NC_007205.1 rod shape-determining protein MreD 1305443 mreD 3517469 mreD Candidatus Pelagibacter ubique HTCC1062 rod shape-determining protein MreD YP_266778.1 1304922 R 335992 CDS YP_266779.1 71084059 3517470 complement(1305440..1306090) 1 NC_007205.1 rod shape-determining protein MreC 1306090 mreC 3517470 mreC Candidatus Pelagibacter ubique HTCC1062 rod shape-determining protein MreC YP_266779.1 1305440 R 335992 CDS YP_266780.1 71084060 3517471 complement(1306297..1307334) 1 NC_007205.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1307334 mreB 3517471 mreB Candidatus Pelagibacter ubique HTCC1062 rod shape-determining protein MreB YP_266780.1 1306297 R 335992 CDS YP_266781.1 71084061 3517472 complement(1307340..1308584) 1 NC_007205.1 2-isopropylmalate synthase 1308584 leuA 3517472 leuA Candidatus Pelagibacter ubique HTCC1062 2-isopropylmalate synthase YP_266781.1 1307340 R 335992 CDS YP_266782.1 71084062 3517473 1308630..1308719 1 NC_007205.1 hypothetical protein 1308719 3517473 SAR11_1375 Candidatus Pelagibacter ubique HTCC1062 hypothetical protein YP_266782.1 1308630 D 335992 CDS