-- dump date 20140619_024537 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 335992000001 SEQ_END SEQ_END NC_007205.1 1308759 1308759 DR NC_007205.1; contig end 1308759..1308759 Candidatus Pelagibacter ubique HTCC1062 YP_265429.2 CDS ilvC NC_007205.1 516 1535 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(516..1535) Candidatus Pelagibacter ubique HTCC1062 3517358 YP_265430.1 CDS ilvH NC_007205.1 1556 2104 R acetolactate synthase small subunit complement(1556..2104) Candidatus Pelagibacter ubique HTCC1062 3517359 YP_265431.1 CDS ilvB NC_007205.1 2105 3871 R catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit complement(2105..3871) Candidatus Pelagibacter ubique HTCC1062 3517360 YP_265432.1 CDS miaA NC_007205.1 3891 4832 R tRNA isopentenyltransferase complement(3891..4832) Candidatus Pelagibacter ubique HTCC1062 3517361 YP_265433.1 CDS htrA NC_007205.1 4835 6247 R periplasmic serine protease DO-like complement(4835..6247) Candidatus Pelagibacter ubique HTCC1062 3517362 YP_265434.1 CDS SAR11_0006 NC_007205.1 6249 6434 R ubiquitin binding protein complement(6249..6434) Candidatus Pelagibacter ubique HTCC1062 3517363 YP_265435.1 CDS hflC NC_007205.1 6444 7310 R integral membrane proteinase complement(6444..7310) Candidatus Pelagibacter ubique HTCC1062 3516637 YP_265436.1 CDS hflK NC_007205.1 7310 8410 R integral membrane proteinase complement(7310..8410) Candidatus Pelagibacter ubique HTCC1062 3516638 YP_265437.1 CDS mrp NC_007205.1 8411 9286 D ATPase 8411..9286 Candidatus Pelagibacter ubique HTCC1062 3516639 YP_265438.1 CDS thyX NC_007205.1 9267 10301 R flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase complement(9267..10301) Candidatus Pelagibacter ubique HTCC1062 3516640 YP_265439.1 CDS SAR11_0011 NC_007205.1 10519 10890 R possibly viral; hypothetical protein complement(10519..10890) Candidatus Pelagibacter ubique HTCC1062 3516641 YP_265440.1 CDS fumC NC_007205.1 10957 12345 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 10957..12345 Candidatus Pelagibacter ubique HTCC1062 3516642 YP_265441.1 CDS SAR11_0013 NC_007205.1 12333 13784 R hypothetical protein complement(12333..13784) Candidatus Pelagibacter ubique HTCC1062 3516643 YP_265442.1 CDS uvrD NC_007205.1 13829 15865 D DNA helicase II 13829..15865 Candidatus Pelagibacter ubique HTCC1062 3516644 YP_265443.1 CDS pepP NC_007205.1 15862 17556 D Xaa-Pro aminopeptidase 15862..17556 Candidatus Pelagibacter ubique HTCC1062 3516645 YP_265444.1 CDS ligA NC_007205.1 17539 19569 R DNA ligase complement(17539..19569) Candidatus Pelagibacter ubique HTCC1062 3516646 YP_265445.1 CDS comL NC_007205.1 19571 20419 R competence lipoprotein ComL complement(19571..20419) Candidatus Pelagibacter ubique HTCC1062 3516647 YP_265446.1 CDS lpxC NC_007205.1 20458 21378 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(20458..21378) Candidatus Pelagibacter ubique HTCC1062 3516648 YP_265447.1 CDS ftsA NC_007205.1 21444 22553 R cell division protein FtsA complement(21444..22553) Candidatus Pelagibacter ubique HTCC1062 3516649 YP_265448.1 CDS ftsQ NC_007205.1 22553 23230 R FtsQ; cell division protein FtsQ complement(22553..23230) Candidatus Pelagibacter ubique HTCC1062 3516650 YP_265449.1 CDS ddlB NC_007205.1 23211 24125 R D-alanine--D-alanine ligase complement(23211..24125) Candidatus Pelagibacter ubique HTCC1062 3516651 YP_265450.1 CDS murB NC_007205.1 24127 25035 R UDP-N-acetylenolpyruvoylglucosamine reductase complement(24127..25035) Candidatus Pelagibacter ubique HTCC1062 3516652 YP_265451.1 CDS murC NC_007205.1 25035 26429 R UDP-N-acetylmuramate--L-alanine ligase complement(25035..26429) Candidatus Pelagibacter ubique HTCC1062 3516653 YP_265452.1 CDS murG NC_007205.1 26419 27489 R D-inositol-3-phosphate glycosyltransferase complement(26419..27489) Candidatus Pelagibacter ubique HTCC1062 3516654 YP_265453.1 CDS ftsW NC_007205.1 27490 28614 R cell division protein FtsW complement(27490..28614) Candidatus Pelagibacter ubique HTCC1062 3516655 YP_265454.1 CDS murD NC_007205.1 28611 29906 R UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(28611..29906) Candidatus Pelagibacter ubique HTCC1062 3516656 YP_265455.1 CDS mraY NC_007205.1 29906 30991 R phospho-N-acetylmuramoyl-pentapeptide- transferase complement(29906..30991) Candidatus Pelagibacter ubique HTCC1062 3516657 YP_265456.1 CDS murEF NC_007205.1 30981 33827 R murE and murF fusion; bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase complement(30981..33827) Candidatus Pelagibacter ubique HTCC1062 3516658 YP_265457.1 CDS ftsI NC_007205.1 33835 35511 R penicillin-binding protein 2; cell division protein FtsI complement(33835..35511) Candidatus Pelagibacter ubique HTCC1062 3516659 YP_265458.1 CDS ftsL NC_007205.1 35504 35812 R ingrowth of wall at septum; cell division protein FtsL complement(35504..35812) Candidatus Pelagibacter ubique HTCC1062 3516660 YP_265459.1 CDS mraW NC_007205.1 35809 36819 R S-adenosyl-methyltransferase complement(35809..36819) Candidatus Pelagibacter ubique HTCC1062 3516661 YP_265460.1 CDS ftsZ NC_007205.1 36838 38325 R FtsZ; cell division protein FtsZ complement(36838..38325) Candidatus Pelagibacter ubique HTCC1062 3516662 YP_265461.1 CDS mraZ NC_007205.1 38328 38795 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(38328..38795) Candidatus Pelagibacter ubique HTCC1062 3516663 YP_265462.1 CDS ybjR NC_007205.1 39448 40191 R probable ybjR; N-acetylmuramoyl-L-alanine amidase complement(39448..40191) Candidatus Pelagibacter ubique HTCC1062 3516664 YP_265463.1 CDS vacJ NC_007205.1 40261 41046 D lipoprotein precursor 40261..41046 Candidatus Pelagibacter ubique HTCC1062 3516665 YP_265464.1 CDS yrbC NC_007205.1 41060 41653 D Ttg2 Family, yrbC similar to toluene tolerance protein; hypothetical protein 41060..41653 Candidatus Pelagibacter ubique HTCC1062 3516666 YP_265465.1 CDS rpoD NC_007205.1 41900 43687 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(41900..43687) Candidatus Pelagibacter ubique HTCC1062 3516669 YP_265466.1 CDS dnaG NC_007205.1 43790 45565 R probable dnaG; DNA primase complement(43790..45565) Candidatus Pelagibacter ubique HTCC1062 3516670 YP_265467.1 CDS yqeY NC_007205.1 45565 46026 R hypothetical protein complement(45565..46026) Candidatus Pelagibacter ubique HTCC1062 3516671 YP_265468.1 CDS carA NC_007205.1 46155 47351 D carbamoylphosphate synthase small subunit 46155..47351 Candidatus Pelagibacter ubique HTCC1062 3516672 YP_265469.1 CDS carB NC_007205.1 47329 50553 D carbamoyl-phosphate synthase large subunit 47329..50553 Candidatus Pelagibacter ubique HTCC1062 3516673 YP_265470.2 CDS SAR11_0042 NC_007205.1 50650 52812 R secretory autotransporter complement(50650..52812) Candidatus Pelagibacter ubique HTCC1062 3516617 YP_265471.1 CDS SAR11_0043 NC_007205.1 52886 53026 R hypothetical protein complement(52886..53026) Candidatus Pelagibacter ubique HTCC1062 3516618 YP_265472.1 CDS SAR11_0044 NC_007205.1 53177 55348 D Outer membrane autotransporter 53177..55348 Candidatus Pelagibacter ubique HTCC1062 3516619 YP_265473.1 CDS SAR11_0045 NC_007205.1 55348 55692 D hypothetical protein 55348..55692 Candidatus Pelagibacter ubique HTCC1062 3516620 YP_265474.2 CDS SAR11_0046 NC_007205.1 55701 57875 R Outer membrane autotransporter complement(55701..57875) Candidatus Pelagibacter ubique HTCC1062 3516621 YP_265475.1 CDS SAR11_0047 NC_007205.1 58036 59004 D transcription regulatory protein 58036..59004 Candidatus Pelagibacter ubique HTCC1062 3516622 YP_265476.1 CDS SAR11_0048 NC_007205.1 58997 59845 R Sodium bile symporter family protein complement(58997..59845) Candidatus Pelagibacter ubique HTCC1062 3516623 YP_265477.1 CDS SAR11_0049 NC_007205.1 60069 62204 R ammonium transporter complement(60069..62204) Candidatus Pelagibacter ubique HTCC1062 3516624 YP_265478.1 CDS SAR11_0050 NC_007205.1 62323 64560 R ammonium transporter complement(62323..64560) Candidatus Pelagibacter ubique HTCC1062 3516625 YP_265479.1 CDS copZ NC_007205.1 64574 64903 R heavy metal transport/detoxification protein complement(64574..64903) Candidatus Pelagibacter ubique HTCC1062 3516626 YP_265480.1 CDS SAR11_0052 NC_007205.1 65036 65326 R hypothetical protein complement(65036..65326) Candidatus Pelagibacter ubique HTCC1062 3516627 YP_265481.1 CDS pulG NC_007205.1 65399 65836 R pseudo-pilin PulG complement(65399..65836) Candidatus Pelagibacter ubique HTCC1062 3516628 YP_265482.1 CDS pilA NC_007205.1 65846 66331 R pilin complement(65846..66331) Candidatus Pelagibacter ubique HTCC1062 3516629 YP_265483.1 CDS SAR11_0055 NC_007205.1 66490 66774 D sulfate transporter/antisigma-factor antagonist STAS 66490..66774 Candidatus Pelagibacter ubique HTCC1062 3516630 YP_265484.1 CDS spoIIA NC_007205.1 66771 67070 D sulfate transporter/antisigma-factor antagonist STAS 66771..67070 Candidatus Pelagibacter ubique HTCC1062 3516631 YP_265485.1 CDS rsbW NC_007205.1 67078 67512 D anti-sigma regulatory factor 67078..67512 Candidatus Pelagibacter ubique HTCC1062 3516632 YP_265486.1 CDS pilC NC_007205.1 67509 68741 R Type IV fimbrial assembly protein, pilC; type II secretion system PilC complement(67509..68741) Candidatus Pelagibacter ubique HTCC1062 3516633 YP_265487.1 CDS pilB NC_007205.1 68744 70495 R Type IV pilus assembly protein (ATPase) PilB; type II secretion system PilB complement(68744..70495) Candidatus Pelagibacter ubique HTCC1062 3516634 YP_265488.1 CDS pilQ NC_007205.1 70495 72051 R Type IV fimbrial biogenesis protein PilQ; type II secretion PilQ complement(70495..72051) Candidatus Pelagibacter ubique HTCC1062 3516635 YP_265489.1 CDS pilP NC_007205.1 72054 72560 R type 4 fimbrial biogenesis protein PilP complement(72054..72560) Candidatus Pelagibacter ubique HTCC1062 3516636 YP_265490.1 CDS pilO NC_007205.1 72547 73224 R type 4 fimbrial biogenesis protein PilO complement(72547..73224) Candidatus Pelagibacter ubique HTCC1062 3516598 YP_265491.1 CDS pilMN NC_007205.1 73227 75770 R Type IV pilus biogenesis protein, PilM/PilN fusion; type II secretion complement(73227..75770) Candidatus Pelagibacter ubique HTCC1062 3516599 YP_265492.1 CDS rsbU NC_007205.1 77115 78461 R GAF photoreceptor fused to PP2C; sigma factor sigB regulation protein complement(77115..78461) Candidatus Pelagibacter ubique HTCC1062 3516600 YP_265493.1 CDS pild NC_007205.1 78561 79325 D Type IV Prepilin Peptidase A24A; type II secretion PilD 78561..79325 Candidatus Pelagibacter ubique HTCC1062 3516601 YP_265494.1 CDS fimc NC_007205.1 79386 80105 D membrane-bound pili assembly protein Fimc 79386..80105 Candidatus Pelagibacter ubique HTCC1062 3516602 YP_265495.1 CDS pilY1 NC_007205.1 80345 84916 R Type IV fimbrial biogenesis protein, PilY1; type II secretion PilY1 complement(80345..84916) Candidatus Pelagibacter ubique HTCC1062 3516603 YP_265496.1 CDS SAR11_0069 NC_007205.1 85064 85588 R pilX-type protein complement(85064..85588) Candidatus Pelagibacter ubique HTCC1062 3516604 YP_265497.1 CDS SAR11_0070 NC_007205.1 85664 86368 R type IV pilus assembly protein PilW complement(85664..86368) Candidatus Pelagibacter ubique HTCC1062 3516605 YP_265498.1 CDS SAR11_0071 NC_007205.1 86437 87291 R pilW-like; type IV pilin secretion protein complement(86437..87291) Candidatus Pelagibacter ubique HTCC1062 3516606 YP_265499.1 CDS SAR11_0072 NC_007205.1 87366 88016 R similar to PilV; pilV-like pilin protein complement(87366..88016) Candidatus Pelagibacter ubique HTCC1062 3516607 YP_265500.1 CDS SAR11_0073 NC_007205.1 88021 88746 R pilU-like; pilin protein PilU complement(88021..88746) Candidatus Pelagibacter ubique HTCC1062 3516608 YP_265501.1 CDS pilT NC_007205.1 88721 89734 R Type IV pilus retraction ATPase PilT; type II secretion PilT complement(88721..89734) Candidatus Pelagibacter ubique HTCC1062 3516609 YP_265502.1 CDS SAR11_0075 NC_007205.1 89886 90548 R hypothetical protein complement(89886..90548) Candidatus Pelagibacter ubique HTCC1062 3516610 YP_265503.1 CDS SAR11_0076 NC_007205.1 90548 91492 R nucleoside-diphosphate-sugar epimerase complement(90548..91492) Candidatus Pelagibacter ubique HTCC1062 3516611 YP_265504.1 CDS trxB NC_007205.1 91514 92458 D thioredoxin reductase 91514..92458 Candidatus Pelagibacter ubique HTCC1062 3516612 YP_265505.1 CDS SAR11_0078 NC_007205.1 92500 93519 D NAD dependent epimerase/dehydratase protein 92500..93519 Candidatus Pelagibacter ubique HTCC1062 3516613 YP_265506.1 CDS ytoQ NC_007205.1 93511 93960 R hypothetical protein complement(93511..93960) Candidatus Pelagibacter ubique HTCC1062 3516614 YP_265507.1 CDS aatA NC_007205.1 93960 95159 R aspartate transaminase complement(93960..95159) Candidatus Pelagibacter ubique HTCC1062 3516615 YP_265508.1 CDS uvrB NC_007205.1 95195 97366 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 95195..97366 Candidatus Pelagibacter ubique HTCC1062 3516616 YP_265509.1 CDS SAR11_0082 NC_007205.1 97348 98100 D short-chain dehydrogenase 97348..98100 Candidatus Pelagibacter ubique HTCC1062 3516578 YP_265510.1 CDS folB NC_007205.1 98097 98522 D dihydroneopterin aldolase 98097..98522 Candidatus Pelagibacter ubique HTCC1062 3516579 YP_265511.1 CDS uvrC NC_007205.1 98509 100344 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 98509..100344 Candidatus Pelagibacter ubique HTCC1062 3516580 YP_265512.1 CDS pgsA NC_007205.1 100347 100931 D CDP-diacylglycerol 100347..100931 Candidatus Pelagibacter ubique HTCC1062 3516581 YP_265513.1 CDS ilvE NC_007205.1 100928 101809 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(100928..101809) Candidatus Pelagibacter ubique HTCC1062 3516582 YP_265514.1 CDS petP NC_007205.1 101880 102317 D MarR family (Pfam); transcriptional regulator 101880..102317 Candidatus Pelagibacter ubique HTCC1062 3516583 YP_265515.1 CDS petR NC_007205.1 102310 102987 D OmpR family, response regulator, ompR; two-component system 102310..102987 Candidatus Pelagibacter ubique HTCC1062 3516584 YP_265516.1 CDS envZ NC_007205.1 102968 104287 D osmolarity sensor protein envZ 102968..104287 Candidatus Pelagibacter ubique HTCC1062 3516585 YP_265517.1 CDS SAR11_0090 NC_007205.1 104265 104519 R hypothetical protein complement(104265..104519) Candidatus Pelagibacter ubique HTCC1062 3516586 YP_265518.1 CDS lgt NC_007205.1 104566 105336 D lgt (umpA); prolipoprotein diacylglyceryl transferase 104566..105336 Candidatus Pelagibacter ubique HTCC1062 3516587 YP_265519.1 CDS cdfA NC_007205.1 105326 106369 D cyclopropane-fatty-acyl-phospholipid synthase 105326..106369 Candidatus Pelagibacter ubique HTCC1062 3516588 YP_265520.1 CDS SAR11_0093 NC_007205.1 106800 107135 D YfiH family COG1496; hypothetical protein 106800..107135 Candidatus Pelagibacter ubique HTCC1062 3516589 YP_265521.1 CDS prsA NC_007205.1 107142 108074 D ribose-phosphate pyrophosphokinase 107142..108074 Candidatus Pelagibacter ubique HTCC1062 3516590 YP_265522.1 CDS rplY NC_007205.1 108119 108805 D ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 108119..108805 Candidatus Pelagibacter ubique HTCC1062 3516591 YP_265523.1 CDS pth NC_007205.1 108851 109411 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 108851..109411 Candidatus Pelagibacter ubique HTCC1062 3516592 YP_265524.1 CDS SAR11_0097 NC_007205.1 109411 110484 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 109411..110484 Candidatus Pelagibacter ubique HTCC1062 3516593 YP_265525.1 CDS fbcH NC_007205.1 110461 111240 R ubiquinol-cytochrome-c reductase complement(110461..111240) Candidatus Pelagibacter ubique HTCC1062 3516594 YP_265526.1 CDS petB NC_007205.1 111245 112504 R ubiquinol-cytochrome-c reductase complement(111245..112504) Candidatus Pelagibacter ubique HTCC1062 3516595 YP_265527.1 CDS petA NC_007205.1 112514 113023 R cytochrome b6-f complex iron-sulfur subunit complement(112514..113023) Candidatus Pelagibacter ubique HTCC1062 3516596 YP_265528.1 CDS spoU NC_007205.1 113110 113571 D rRNA methylase 113110..113571 Candidatus Pelagibacter ubique HTCC1062 3516597 YP_265529.1 CDS hemF NC_007205.1 113571 114398 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 113571..114398 Candidatus Pelagibacter ubique HTCC1062 3516753 YP_265530.1 CDS greA NC_007205.1 114400 114876 D transcription elongation factor 114400..114876 Candidatus Pelagibacter ubique HTCC1062 3516754 YP_265531.1 CDS pcnB NC_007205.1 114873 116147 R poly(A) polymerase complement(114873..116147) Candidatus Pelagibacter ubique HTCC1062 3516755 YP_265532.1 CDS ispE NC_007205.1 116257 117102 R 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(116257..117102) Candidatus Pelagibacter ubique HTCC1062 3516757 YP_265533.1 CDS SAR11_0106 NC_007205.1 117106 118791 R hypothetical protein complement(117106..118791) Candidatus Pelagibacter ubique HTCC1062 3516758 YP_265534.1 CDS SAR11_0107 NC_007205.1 118803 119534 D bacteriophage-type; DNA-directed DNA polymerase 118803..119534 Candidatus Pelagibacter ubique HTCC1062 3516759 YP_265535.1 CDS rnhB NC_007205.1 119534 120094 D ribonuclease HII (RNase HII) 119534..120094 Candidatus Pelagibacter ubique HTCC1062 3516760 YP_265536.1 CDS babIM NC_007205.1 120216 121286 D site-specific DNA methyltransferase 120216..121286 Candidatus Pelagibacter ubique HTCC1062 3516761 YP_265537.1 CDS nah NC_007205.1 121283 122434 R salicylate 1-monooxygenase complement(121283..122434) Candidatus Pelagibacter ubique HTCC1062 3516762 YP_265538.1 CDS mutY NC_007205.1 122434 123414 R A/G-specific adenine glycosylase complement(122434..123414) Candidatus Pelagibacter ubique HTCC1062 3516763 YP_265539.1 CDS SAR11_0112 NC_007205.1 123415 123903 D hypothetical protein 123415..123903 Candidatus Pelagibacter ubique HTCC1062 3516764 YP_265540.1 CDS SAR11_0113 NC_007205.1 123975 124490 D thiol-disulfide interchange protein; DsbA-like protein 123975..124490 Candidatus Pelagibacter ubique HTCC1062 3516765 YP_265541.1 CDS smc NC_007205.1 124499 127072 D SMC family chromosome segregation protein 124499..127072 Candidatus Pelagibacter ubique HTCC1062 3516766 YP_265542.1 CDS SAR11_0115 NC_007205.1 127081 127356 D transmembrane protein 127081..127356 Candidatus Pelagibacter ubique HTCC1062 3516767 YP_265543.1 CDS atpB NC_007205.1 127369 128103 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 127369..128103 Candidatus Pelagibacter ubique HTCC1062 3516768 YP_265544.1 CDS atpE NC_007205.1 128123 128350 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 128123..128350 Candidatus Pelagibacter ubique HTCC1062 3516769 YP_265545.1 CDS SAR11_0118 NC_007205.1 128407 128946 D H+-transporting two-sector ATPase (subunit b') 128407..128946 Candidatus Pelagibacter ubique HTCC1062 3516770 YP_265546.1 CDS atpF NC_007205.1 128936 129433 D H+-transporting two-sector ATPase (subunit b) 128936..129433 Candidatus Pelagibacter ubique HTCC1062 3516733 YP_265547.1 CDS crtI NC_007205.1 129473 130930 D phytoene dehydrogenase 129473..130930 Candidatus Pelagibacter ubique HTCC1062 3516734 YP_265548.1 CDS crtB NC_007205.1 130930 131781 D phytoene synthase 130930..131781 Candidatus Pelagibacter ubique HTCC1062 3516735 YP_265549.1 CDS crtY NC_007205.1 131813 132844 D lycopene cyclase 131813..132844 Candidatus Pelagibacter ubique HTCC1062 3516736 YP_265550.1 CDS SAR11_0123 NC_007205.1 132834 133772 D transmembrane protein 132834..133772 Candidatus Pelagibacter ubique HTCC1062 3516737 YP_265551.1 CDS lytB NC_007205.1 133762 134706 D 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 133762..134706 Candidatus Pelagibacter ubique HTCC1062 3516738 YP_265552.1 CDS thrB NC_007205.1 134707 135675 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 134707..135675 Candidatus Pelagibacter ubique HTCC1062 3516739 YP_265553.1 CDS rnhA NC_007205.1 135675 136100 D ribonuclease H (RNase H) 135675..136100 Candidatus Pelagibacter ubique HTCC1062 3516740 YP_265554.1 CDS pmpA NC_007205.1 136092 136577 R peroxisomal membrane protein a (pmp20) complement(136092..136577) Candidatus Pelagibacter ubique HTCC1062 3516741 YP_265555.1 CDS thrC NC_007205.1 136574 137953 R threonine synthase complement(136574..137953) Candidatus Pelagibacter ubique HTCC1062 3516742 YP_265556.1 CDS surf1 NC_007205.1 137954 138607 R biogenesis of cytochrome oxidase c; surfeit locus protein 1 complement(137954..138607) Candidatus Pelagibacter ubique HTCC1062 3516743 YP_265557.1 CDS coxC NC_007205.1 138618 139406 R similar to subunit III, coxC Rickettsia; cytochrome-c oxidase complement(138618..139406) Candidatus Pelagibacter ubique HTCC1062 3516744 YP_265558.1 CDS ctaG NC_007205.1 139409 139945 R involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein complement(139409..139945) Candidatus Pelagibacter ubique HTCC1062 3516745 YP_265559.1 CDS SAR11_0132 NC_007205.1 139945 140070 R serine protease inhibitor sgti complement(139945..140070) Candidatus Pelagibacter ubique HTCC1062 3516746 YP_265560.2 CDS ctaB NC_007205.1 140067 140978 R cytochrome c oxidase assembly factor complement(140067..140978) Candidatus Pelagibacter ubique HTCC1062 3516747 YP_265561.1 CDS cox1 NC_007205.1 141011 142645 R chain I; cytochrome-c oxidase complement(141011..142645) Candidatus Pelagibacter ubique HTCC1062 3516748 YP_265562.1 CDS coxB NC_007205.1 142648 143463 R cytochrome c oxidase polypeptide II (cytochrome aa3 subunit 2) complement(142648..143463) Candidatus Pelagibacter ubique HTCC1062 3516749 YP_265563.1 CDS SAR11_0136 NC_007205.1 143525 144226 R hypothetical protein complement(143525..144226) Candidatus Pelagibacter ubique HTCC1062 3516750 YP_265564.1 CDS dhlB NC_007205.1 144244 144906 D (S)-2-haloacid dehalogenase 144244..144906 Candidatus Pelagibacter ubique HTCC1062 3516751 YP_265565.1 CDS SAR11_0138 NC_007205.1 144899 145258 R MarR family (Interpro); transcriptional regulator complement(144899..145258) Candidatus Pelagibacter ubique HTCC1062 3516752 YP_265566.1 CDS SAR11_0139 NC_007205.1 145353 145589 D glutamate synthetase 145353..145589 Candidatus Pelagibacter ubique HTCC1062 3516848 YP_265567.1 CDS SAR11_0140 NC_007205.1 145619 145999 D DoxD-like family protein 145619..145999 Candidatus Pelagibacter ubique HTCC1062 3516849 YP_265568.1 CDS SAR11_0141 NC_007205.1 146096 147634 D GltB-like protein; ferredoxin-dependent glutamate synthase peptide 146096..147634 Candidatus Pelagibacter ubique HTCC1062 3516850 YP_265569.1 CDS SAR11_0142 NC_007205.1 147644 148483 D pirin 147644..148483 Candidatus Pelagibacter ubique HTCC1062 3516851 YP_265570.1 CDS qor NC_007205.1 148483 149457 D quinone oxidoreductase 148483..149457 Candidatus Pelagibacter ubique HTCC1062 3516852 YP_265571.1 CDS SAR11_0144 NC_007205.1 149454 149858 R hypothetical protein complement(149454..149858) Candidatus Pelagibacter ubique HTCC1062 3516853 YP_265572.1 CDS ubiA NC_007205.1 149911 150774 D 4-hydroxybenzoate octaprenyltransferase 149911..150774 Candidatus Pelagibacter ubique HTCC1062 3516854 YP_265573.1 CDS SAR11_0147 NC_007205.1 150774 152513 D ABC transporter ATP-binding protein 150774..152513 Candidatus Pelagibacter ubique HTCC1062 3516855 YP_265574.1 CDS kdtA NC_007205.1 152513 153775 D 3-deoxy-D-manno-octulosonic-acid transferase 152513..153775 Candidatus Pelagibacter ubique HTCC1062 3516856 YP_265575.1 CDS lpxK NC_007205.1 153756 154700 D tetraacyldisaccharide 4'-kinase 153756..154700 Candidatus Pelagibacter ubique HTCC1062 3516857 YP_265576.1 CDS htrB NC_007205.1 154687 155547 D lipid A biosynthesis lauroyl acyltransferase 154687..155547 Candidatus Pelagibacter ubique HTCC1062 3516858 YP_265577.1 CDS SAR11_0152 NC_007205.1 155552 155740 R hypothetical protein complement(155552..155740) Candidatus Pelagibacter ubique HTCC1062 3516859 YP_265578.1 CDS purD NC_007205.1 155762 157027 D phosphoribosylamine--glycine ligase 155762..157027 Candidatus Pelagibacter ubique HTCC1062 3516860 YP_265579.1 CDS SAR11_0154 NC_007205.1 157024 157590 D N-6 adenine-specific DNA methylase 157024..157590 Candidatus Pelagibacter ubique HTCC1062 3516861 YP_265580.1 CDS pgi NC_007205.1 157582 158724 R glucose-6-phosphate isomerase complement(157582..158724) Candidatus Pelagibacter ubique HTCC1062 3516862 YP_265581.2 CDS SAR11_0156 NC_007205.1 158728 159102 R hypothetical protein complement(158728..159102) Candidatus Pelagibacter ubique HTCC1062 3516863 YP_265582.1 CDS lspA NC_007205.1 159167 159667 R lipoprotein signal peptidase complement(159167..159667) Candidatus Pelagibacter ubique HTCC1062 3516864 YP_265583.1 CDS ileS NC_007205.1 159680 162397 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(159680..162397) Candidatus Pelagibacter ubique HTCC1062 3516865 YP_265584.1 CDS ribF NC_007205.1 162399 163316 R riboflavin biosynthesis protein complement(162399..163316) Candidatus Pelagibacter ubique HTCC1062 3516866 YP_265585.1 CDS SAR11_0160 NC_007205.1 163320 164138 R haloacid dehalogenase complement(163320..164138) Candidatus Pelagibacter ubique HTCC1062 3516887 YP_265586.1 CDS groES NC_007205.1 164262 164552 D molecular chaperone GroES 164262..164552 Candidatus Pelagibacter ubique HTCC1062 3516888 YP_265587.1 CDS groEL NC_007205.1 164576 166240 D molecular chaperone GroEL 164576..166240 Candidatus Pelagibacter ubique HTCC1062 3516889 YP_265588.1 CDS SAR11_0163 NC_007205.1 166322 166435 D hypothetical protein 166322..166435 Candidatus Pelagibacter ubique HTCC1062 3516890 YP_265589.1 CDS rlhE NC_007205.1 166432 168180 R rhlE; ATP-dependent RNA helicase complement(166432..168180) Candidatus Pelagibacter ubique HTCC1062 3516891 YP_265590.1 CDS typA NC_007205.1 168376 170202 D TypA; GTP-binding protein 168376..170202 Candidatus Pelagibacter ubique HTCC1062 3516892 YP_265591.1 CDS SAR11_0166 NC_007205.1 170199 170846 R hypothetical protein complement(170199..170846) Candidatus Pelagibacter ubique HTCC1062 3516893 YP_265592.1 CDS SAR11_0167 NC_007205.1 170900 171580 D hypothetical protein 170900..171580 Candidatus Pelagibacter ubique HTCC1062 3516894 YP_265593.1 CDS SAR11_0168 NC_007205.1 171583 172554 R flavin-containing (Fugue); amine oxidase complement(171583..172554) Candidatus Pelagibacter ubique HTCC1062 3516895 YP_265594.1 CDS pmbA NC_007205.1 172551 173870 R protein for maturation of antibiotic MccB17 complement(172551..173870) Candidatus Pelagibacter ubique HTCC1062 3516896 YP_265595.1 CDS tldD NC_007205.1 173876 175288 R TldD; protein that suppresses inhibitory activity of CsrA complement(173876..175288) Candidatus Pelagibacter ubique HTCC1062 3516897 YP_265596.1 CDS SAR11_0171 NC_007205.1 175399 175761 D rhodanese-related sulfurtransferase 175399..175761 Candidatus Pelagibacter ubique HTCC1062 3516898 YP_265597.1 CDS SAR11_0172 NC_007205.1 175765 176112 D hypothetical protein 175765..176112 Candidatus Pelagibacter ubique HTCC1062 3516899 YP_265598.1 CDS SAR11_0173 NC_007205.1 176158 176700 D 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase 176158..176700 Candidatus Pelagibacter ubique HTCC1062 3516900 YP_265599.1 CDS SAR11_0174 NC_007205.1 176702 177877 R hypothetical protein complement(176702..177877) Candidatus Pelagibacter ubique HTCC1062 3516901 YP_265600.1 CDS SAR11_0175 NC_007205.1 177954 178838 R dapA-like protein complement(177954..178838) Candidatus Pelagibacter ubique HTCC1062 3516902 YP_265601.1 CDS gmdA NC_007205.1 178883 179818 D GmdA; GDP-mannose 4,6-dehydratase 178883..179818 Candidatus Pelagibacter ubique HTCC1062 3516903 YP_265602.1 CDS SAR11_0177 NC_007205.1 179815 180753 D heptosyltransferase 179815..180753 Candidatus Pelagibacter ubique HTCC1062 3516904 YP_265603.1 CDS SAR11_0178 NC_007205.1 180750 181256 R DnaJ N Terminal End Only; heat shock protein complement(180750..181256) Candidatus Pelagibacter ubique HTCC1062 3516905 YP_265604.1 CDS ptrB NC_007205.1 181274 183349 D oligopeptidase B 181274..183349 Candidatus Pelagibacter ubique HTCC1062 3516906 YP_265605.1 CDS ibpA NC_007205.1 183448 183894 D heat shock protein a 183448..183894 Candidatus Pelagibacter ubique HTCC1062 3516926 YP_265606.1 CDS SAR11_0182 NC_007205.1 183941 184246 R hypothetical protein complement(183941..184246) Candidatus Pelagibacter ubique HTCC1062 3516927 YP_265607.1 CDS SAR11_0183 NC_007205.1 184378 185688 D xanthine/uracil/vitamin C permease family protein 184378..185688 Candidatus Pelagibacter ubique HTCC1062 3516928 YP_265608.1 CDS SAR11_0184 NC_007205.1 185722 186258 R phosphoribosyltransferase complement(185722..186258) Candidatus Pelagibacter ubique HTCC1062 3516929 YP_265609.1 CDS SAR11_0185 NC_007205.1 186287 186583 D hypothetical protein 186287..186583 Candidatus Pelagibacter ubique HTCC1062 3516930 YP_265610.1 CDS tag NC_007205.1 186570 187142 R DNA-3-methyladenine glycosylase I complement(186570..187142) Candidatus Pelagibacter ubique HTCC1062 3516931 YP_265611.1 CDS SAR11_0187 NC_007205.1 187198 188082 R DMT family permease complement(187198..188082) Candidatus Pelagibacter ubique HTCC1062 3516932 YP_265612.1 CDS msrB NC_007205.1 188118 188561 D peptide methionine sulfoxide reductase 188118..188561 Candidatus Pelagibacter ubique HTCC1062 3516933 YP_265613.1 CDS sseA NC_007205.1 188563 189375 D rhodanese-like, sseA (KEGG b2521); thiosulfate sulfurtransferase 188563..189375 Candidatus Pelagibacter ubique HTCC1062 3516934 YP_265614.1 CDS yhil NC_007205.1 189379 190248 D YhiI; HlyD family-like protein 189379..190248 Candidatus Pelagibacter ubique HTCC1062 3516935 YP_265615.1 CDS SAR11_0191 NC_007205.1 190248 193370 D AcrB/AcrD/AcrF family protein 190248..193370 Candidatus Pelagibacter ubique HTCC1062 3516936 YP_265616.1 CDS SAR11_0192 NC_007205.1 193367 193966 R similar to slt domain (Fugue); soluble lytic murein transglycosylase complement(193367..193966) Candidatus Pelagibacter ubique HTCC1062 3516937 YP_265617.1 CDS SAR11_1720 NC_007205.1 193953 194342 R hypothetical protein complement(193953..194342) Candidatus Pelagibacter ubique HTCC1062 3516938 YP_265618.1 CDS gpmA NC_007205.1 194401 195117 D 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 194401..195117 Candidatus Pelagibacter ubique HTCC1062 3516939 YP_265619.1 CDS SAR11_0194 NC_007205.1 195106 195795 R nucleotidyltransferase family protein complement(195106..195795) Candidatus Pelagibacter ubique HTCC1062 3516940 YP_265620.1 CDS SAR11_0195 NC_007205.1 195792 196757 R phosphotransferase enzyme family protein complement(195792..196757) Candidatus Pelagibacter ubique HTCC1062 3516941 YP_265621.1 CDS SAR11_0196 NC_007205.1 196761 197219 R cell division control protein 6 complement(196761..197219) Candidatus Pelagibacter ubique HTCC1062 3516942 YP_265622.1 CDS ahcY NC_007205.1 197203 198489 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(197203..198489) Candidatus Pelagibacter ubique HTCC1062 3516943 YP_265623.1 CDS chvG NC_007205.1 198533 200071 R two-component sensor histidine kinase complement(198533..200071) Candidatus Pelagibacter ubique HTCC1062 3516944 YP_265624.1 CDS chvI NC_007205.1 200071 200778 R two-component system response regulator complement(200071..200778) Candidatus Pelagibacter ubique HTCC1062 3517528 YP_265625.1 CDS polA NC_007205.1 200829 203603 R DNA polymerase I complement(200829..203603) Candidatus Pelagibacter ubique HTCC1062 3517529 YP_265626.1 CDS SAR11_0201 NC_007205.1 203654 204583 D YadG-like ABC transporter protein 203654..204583 Candidatus Pelagibacter ubique HTCC1062 3517530 YP_265627.1 CDS SAR11_0202 NC_007205.1 204616 205167 D BioY family (Pfam); biotin synthase 204616..205167 Candidatus Pelagibacter ubique HTCC1062 3517531 YP_265628.1 CDS SAR11_0203 NC_007205.1 205160 205723 R response regulator complement(205160..205723) Candidatus Pelagibacter ubique HTCC1062 3517532 YP_265629.1 CDS speC NC_007205.1 205872 207050 D lysine/ornithine decarboxylase 205872..207050 Candidatus Pelagibacter ubique HTCC1062 3517533 YP_265630.1 CDS dys2 NC_007205.1 207050 208093 D transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine; deoxyhypusine synthase-like protein 207050..208093 Candidatus Pelagibacter ubique HTCC1062 3517534 YP_265631.1 CDS speB1 NC_007205.1 208096 208971 D arginase 208096..208971 Candidatus Pelagibacter ubique HTCC1062 3517535 YP_265632.1 CDS yhhQ NC_007205.1 208968 209522 R YhhQ; hypothetical protein complement(208968..209522) Candidatus Pelagibacter ubique HTCC1062 3517536 YP_265633.1 CDS rpmB NC_007205.1 209522 209845 R 50S ribosomal protein L28 complement(209522..209845) Candidatus Pelagibacter ubique HTCC1062 3517537 YP_265634.1 CDS pyrD NC_007205.1 209899 210951 R dihydroorotate dehydrogenase complement(209899..210951) Candidatus Pelagibacter ubique HTCC1062 3517538 YP_265635.1 CDS lysK NC_007205.1 210951 212528 R class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase complement(210951..212528) Candidatus Pelagibacter ubique HTCC1062 3517539 YP_265636.1 CDS trkH NC_007205.1 212604 214049 D TrkH; potassium uptake protein 212604..214049 Candidatus Pelagibacter ubique HTCC1062 3517540 YP_265637.1 CDS ampG NC_007205.1 214052 215428 D AmpG; muropeptide permease 214052..215428 Candidatus Pelagibacter ubique HTCC1062 3517541 YP_265638.1 CDS SAR11_0214 NC_007205.1 215418 216164 D SH3 and NLP/P60 domains (Pfam); hypothetical protein 215418..216164 Candidatus Pelagibacter ubique HTCC1062 3517542 YP_265639.1 CDS tyrA NC_007205.1 216161 217057 R prephenate dehydrogenase complement(216161..217057) Candidatus Pelagibacter ubique HTCC1062 3517543 YP_265640.1 CDS hisC NC_007205.1 217060 218142 R histidinol-phosphate aminotransferase complement(217060..218142) Candidatus Pelagibacter ubique HTCC1062 3517544 YP_265641.1 CDS metX NC_007205.1 218334 219452 D Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 218334..219452 Candidatus Pelagibacter ubique HTCC1062 3517545 YP_265642.1 CDS metW NC_007205.1 219455 220051 D MetW; methionine biosynthesis protein 219455..220051 Candidatus Pelagibacter ubique HTCC1062 3517546 YP_265643.1 CDS gloB NC_007205.1 220052 220771 D hydroxyacylglutathione hydrolase cytoplasmic 220052..220771 Candidatus Pelagibacter ubique HTCC1062 3517547 YP_265644.1 CDS rplU NC_007205.1 220837 221241 D 50S ribosomal protein L21 220837..221241 Candidatus Pelagibacter ubique HTCC1062 3517548 YP_265645.1 CDS rpmA NC_007205.1 221254 221508 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 221254..221508 Candidatus Pelagibacter ubique HTCC1062 3517549 YP_265646.1 CDS obgE NC_007205.1 221539 222522 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 221539..222522 Candidatus Pelagibacter ubique HTCC1062 3517550 YP_265647.1 CDS proB NC_007205.1 222512 223618 D glutamate 5-kinase 222512..223618 Candidatus Pelagibacter ubique HTCC1062 3517551 YP_265648.1 CDS proA NC_007205.1 223620 224870 D gamma-glutamyl phosphate reductase 223620..224870 Candidatus Pelagibacter ubique HTCC1062 3517552 YP_265649.1 CDS ybeN NC_007205.1 224851 225393 D nicotinate-nucleotide adenylyltransferase 224851..225393 Candidatus Pelagibacter ubique HTCC1062 3517553 YP_265650.1 CDS ybeB NC_007205.1 225411 225761 D iojap-like protein 225411..225761 Candidatus Pelagibacter ubique HTCC1062 3517554 YP_265651.1 CDS ctpA NC_007205.1 225758 226897 D tail-specific proteinase 225758..226897 Candidatus Pelagibacter ubique HTCC1062 3517555 YP_265652.1 CDS nudH NC_007205.1 226898 227374 D (di)nucleoside polyphosphate hydrolase 226898..227374 Candidatus Pelagibacter ubique HTCC1062 3517556 YP_265653.1 CDS atpC NC_007205.1 227367 227759 R ATP synthase F1 subunit epsilon complement(227367..227759) Candidatus Pelagibacter ubique HTCC1062 3517557 YP_265654.1 CDS atpD NC_007205.1 227759 229177 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(227759..229177) Candidatus Pelagibacter ubique HTCC1062 3517558 YP_265655.1 CDS atpG NC_007205.1 229180 230055 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma complement(229180..230055) Candidatus Pelagibacter ubique HTCC1062 3517559 YP_265656.1 CDS atpA NC_007205.1 230059 231594 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(230059..231594) Candidatus Pelagibacter ubique HTCC1062 3517560 YP_265657.1 CDS atpH NC_007205.1 231595 232152 R H+-transporting two-sector ATPase (F0F1-type ATP synthase) delta chain complement(231595..232152) Candidatus Pelagibacter ubique HTCC1062 3517561 YP_265658.1 CDS priA NC_007205.1 232263 234218 R primosomal protein N complement(232263..234218) Candidatus Pelagibacter ubique HTCC1062 3517562 YP_265659.1 CDS pdhD NC_007205.1 234241 235641 R dihydrolipoyl dehydrogenase complement(234241..235641) Candidatus Pelagibacter ubique HTCC1062 3517563 YP_265660.1 CDS sucB NC_007205.1 235642 236919 R 2-oxoglutarate dehydrogenase E2 complement(235642..236919) Candidatus Pelagibacter ubique HTCC1062 3517564 YP_265661.1 CDS sucA NC_007205.1 236922 239825 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 complement(236922..239825) Candidatus Pelagibacter ubique HTCC1062 3517565 YP_265662.1 CDS sucD NC_007205.1 239860 240735 R succinyl-CoA synthetase subunit alpha (SCS-alpha) complement(239860..240735) Candidatus Pelagibacter ubique HTCC1062 3517566 YP_265663.1 CDS sucC NC_007205.1 240737 241897 R succinyl-CoA synthetase subunit beta (SCS-beta) complement(240737..241897) Candidatus Pelagibacter ubique HTCC1062 3517567 YP_265664.1 CDS mdh NC_007205.1 241897 242859 R malate dehydrogenase complement(241897..242859) Candidatus Pelagibacter ubique HTCC1062 3517568 YP_265665.1 CDS mmsA NC_007205.1 242868 244361 R methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH) complement(242868..244361) Candidatus Pelagibacter ubique HTCC1062 3517569 YP_265666.1 CDS sdhB NC_007205.1 244386 245159 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(244386..245159) Candidatus Pelagibacter ubique HTCC1062 3517570 YP_265667.1 CDS sdhA NC_007205.1 245159 246931 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(245159..246931) Candidatus Pelagibacter ubique HTCC1062 3517571 YP_265668.1 CDS SAR11_0244 NC_007205.1 246931 247257 R membrane portion of succinate dehydrogenase complement(246931..247257) Candidatus Pelagibacter ubique HTCC1062 3517572 YP_265669.1 CDS sdhC NC_007205.1 247259 247642 R succinate dehydrogenase cytochrome b complement(247259..247642) Candidatus Pelagibacter ubique HTCC1062 3517573 YP_265670.1 CDS asd NC_007205.1 247635 248636 R aspartate-semialdehyde dehydrogenase complement(247635..248636) Candidatus Pelagibacter ubique HTCC1062 3517574 YP_265671.1 CDS dmdA NC_007205.1 248657 249766 R DmdA; DMSP demethylase; in Silicibacter knockout of this gene results in an inability to convert DMSP to methanethiol which is restored with a cloned copy of the gene; dimethyl sulfoniopropionate demethylase complement(248657..249766) Candidatus Pelagibacter ubique HTCC1062 3517575 YP_265672.1 CDS mhpC NC_007205.1 249763 250539 R alpha/beta hydrolase fold family; hydrolase complement(249763..250539) Candidatus Pelagibacter ubique HTCC1062 3517576 YP_265673.1 CDS fadD NC_007205.1 250536 252164 R acyl-CoA synthetase complement(250536..252164) Candidatus Pelagibacter ubique HTCC1062 3517577 YP_265674.1 CDS mmgC NC_007205.1 252166 253929 R acyl-CoA dehydrogenase complement(252166..253929) Candidatus Pelagibacter ubique HTCC1062 3517578 YP_265675.1 CDS leuB NC_007205.1 253956 255062 R 3-isopropylmalate dehydrogenase complement(253956..255062) Candidatus Pelagibacter ubique HTCC1062 3517579 YP_265676.1 CDS leuD NC_007205.1 255049 255660 R 3-isopropylmalate dehydratase complement(255049..255660) Candidatus Pelagibacter ubique HTCC1062 3517580 YP_265677.1 CDS leuC NC_007205.1 255662 257065 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(255662..257065) Candidatus Pelagibacter ubique HTCC1062 3517581 YP_265678.1 CDS rplS NC_007205.1 257077 257571 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(257077..257571) Candidatus Pelagibacter ubique HTCC1062 3517582 YP_265679.1 CDS trmD NC_007205.1 257588 258274 R tRNA (guanine-N(1)-)-methyltransferase complement(257588..258274) Candidatus Pelagibacter ubique HTCC1062 3517583 YP_265680.1 CDS rpsP NC_007205.1 258283 258816 R 30S ribosomal protein S16 complement(258283..258816) Candidatus Pelagibacter ubique HTCC1062 3517584 YP_265681.1 CDS ffh NC_007205.1 258831 260189 R signal recognition particle protein complement(258831..260189) Candidatus Pelagibacter ubique HTCC1062 3517585 YP_265682.1 CDS dapF NC_007205.1 260349 261173 D diaminopimelate epimerase 260349..261173 Candidatus Pelagibacter ubique HTCC1062 3517586 YP_265683.1 CDS ftsY NC_007205.1 261173 262090 D cell division particle 261173..262090 Candidatus Pelagibacter ubique HTCC1062 3517587 YP_265684.1 CDS SAR11_0259 NC_007205.1 262083 262646 R hypothetical protein complement(262083..262646) Candidatus Pelagibacter ubique HTCC1062 3517588 YP_265685.1 CDS SAR11_0260 NC_007205.1 262705 263598 R Drug/Metabolite Exporter family; transporter complement(262705..263598) Candidatus Pelagibacter ubique HTCC1062 3517589 YP_265686.1 CDS SAR11_0262 NC_007205.1 263611 263790 R transmembrane protein complement(263611..263790) Candidatus Pelagibacter ubique HTCC1062 3517590 YP_265687.1 CDS SAR11_0263 NC_007205.1 263780 265117 R unknown specificity; similar to gatA; amidase complement(263780..265117) Candidatus Pelagibacter ubique HTCC1062 3517591 YP_265688.1 CDS SAR11_0264 NC_007205.1 265128 266489 R large chain; mannitol transporter complement(265128..266489) Candidatus Pelagibacter ubique HTCC1062 3517592 YP_265689.1 CDS SAR11_0265 NC_007205.1 266479 267063 R small chain; mannitol transporter complement(266479..267063) Candidatus Pelagibacter ubique HTCC1062 3517593 YP_265690.1 CDS SAR11_0266 NC_007205.1 267155 268312 R TRAP dicarboxylate transporter - DctP subunit (mannitol/chloroaromatic compounds) complement(267155..268312) Candidatus Pelagibacter ubique HTCC1062 3517594 YP_265691.1 CDS msmX NC_007205.1 268433 269506 R ATP-binding protein, molybdenum/tungsten binding; ABC sugar transporter complement(268433..269506) Candidatus Pelagibacter ubique HTCC1062 3517595 YP_265692.1 CDS msmX2 NC_007205.1 269499 270578 R ATP-binding protein, molybdenum/tungsten binding; ABC sugar transporter complement(269499..270578) Candidatus Pelagibacter ubique HTCC1062 3517596 YP_265693.1 CDS ycjP NC_007205.1 270578 271426 R inner membrane component; ABC transporter complement(270578..271426) Candidatus Pelagibacter ubique HTCC1062 3517597 YP_265694.1 CDS SAR11_0270 NC_007205.1 271429 272289 R binding-protein dependent transport system inner membrane protein complement(271429..272289) Candidatus Pelagibacter ubique HTCC1062 3517598 YP_265695.1 CDS SAR11_0271 NC_007205.1 272358 273893 R ABC transporter substrate-binding protein complement(272358..273893) Candidatus Pelagibacter ubique HTCC1062 3517599 YP_265696.2 CDS adhP NC_007205.1 273915 274976 R alcohol dehydrogenase complement(273915..274976) Candidatus Pelagibacter ubique HTCC1062 3517600 YP_265697.1 CDS stc NC_007205.1 275137 276219 D transcriptional regulator 275137..276219 Candidatus Pelagibacter ubique HTCC1062 3517601 YP_265698.1 CDS SAR11_0274 NC_007205.1 276222 277439 R major facilitator superfamily transporter complement(276222..277439) Candidatus Pelagibacter ubique HTCC1062 3517602 YP_265699.1 CDS SAR11_0275 NC_007205.1 277460 278413 R dehydrogenase complement(277460..278413) Candidatus Pelagibacter ubique HTCC1062 3517603 YP_265700.1 CDS glcF NC_007205.1 278416 279711 R (S)-2-hydroxy-acid oxidase complement(278416..279711) Candidatus Pelagibacter ubique HTCC1062 3517604 YP_265701.1 CDS glcE NC_007205.1 279711 280979 R GlcE; (S)-2-hydroxy-acid oxidase complement(279711..280979) Candidatus Pelagibacter ubique HTCC1062 3517605 YP_265702.1 CDS glcD NC_007205.1 280945 282441 R GlcD; (S)-2-hydroxy-acid oxidase complement(280945..282441) Candidatus Pelagibacter ubique HTCC1062 3517606 YP_265703.1 CDS aspC NC_007205.1 282447 283610 R aspartate transaminase complement(282447..283610) Candidatus Pelagibacter ubique HTCC1062 3517607 YP_265704.1 CDS ildD NC_007205.1 283684 284835 R IldD; l-lactate dehydrogenase complement(283684..284835) Candidatus Pelagibacter ubique HTCC1062 3517608 YP_265705.1 CDS SAR11_0281 NC_007205.1 284844 285353 R hypothetical protein complement(284844..285353) Candidatus Pelagibacter ubique HTCC1062 3517609 YP_265706.1 CDS SAR11_0282 NC_007205.1 285354 285734 R hypothetical protein complement(285354..285734) Candidatus Pelagibacter ubique HTCC1062 3517610 YP_265707.1 CDS ccmG NC_007205.1 285731 286252 R cytochrome C biogenesis protein ccmG complement(285731..286252) Candidatus Pelagibacter ubique HTCC1062 3517611 YP_265708.1 CDS ccmF NC_007205.1 286249 288126 R cytochrome c-type biogenesis protein complement(286249..288126) Candidatus Pelagibacter ubique HTCC1062 3517612 YP_265709.1 CDS ccmE NC_007205.1 288128 288547 R cytochrome c-type biogenesis protein complement(288128..288547) Candidatus Pelagibacter ubique HTCC1062 3517613 YP_265710.1 CDS ccmD NC_007205.1 288558 288785 R CcmD; heme exporter protein D complement(288558..288785) Candidatus Pelagibacter ubique HTCC1062 3517614 YP_265711.1 CDS ccmC NC_007205.1 288782 289492 R CcmC; heme exporter protein complement(288782..289492) Candidatus Pelagibacter ubique HTCC1062 3517615 YP_265712.1 CDS ccmB NC_007205.1 289675 289995 R hypothetical protein complement(289675..289995) Candidatus Pelagibacter ubique HTCC1062 3517616 YP_265713.1 CDS yciB NC_007205.1 290074 290625 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 290074..290625 Candidatus Pelagibacter ubique HTCC1062 3517617 YP_265714.1 CDS SAR11_0290 NC_007205.1 290618 290962 D hypothetical protein 290618..290962 Candidatus Pelagibacter ubique HTCC1062 3517618 YP_265715.1 CDS ybhL NC_007205.1 290968 291666 R hypothetical protein complement(290968..291666) Candidatus Pelagibacter ubique HTCC1062 3517619 YP_265716.1 CDS tas NC_007205.1 291790 292827 D aldo/keto reductase 291790..292827 Candidatus Pelagibacter ubique HTCC1062 3517620 YP_265717.1 CDS SAR11_0293 NC_007205.1 292818 293324 D hypothetical protein 292818..293324 Candidatus Pelagibacter ubique HTCC1062 3517621 YP_265718.1 CDS argG NC_007205.1 293329 294516 D argininosuccinate synthase 293329..294516 Candidatus Pelagibacter ubique HTCC1062 3517622 YP_265719.1 CDS frnE NC_007205.1 294521 295138 D polyketide biosynthesis dithiol-disulfide isomerase 294521..295138 Candidatus Pelagibacter ubique HTCC1062 3517623 YP_265720.1 CDS SAR11_0296 NC_007205.1 295195 295653 D transmembrane protein 295195..295653 Candidatus Pelagibacter ubique HTCC1062 3517624 YP_265721.1 CDS SAR11_0297 NC_007205.1 295653 296033 D phosphate-starvation-inducible E 295653..296033 Candidatus Pelagibacter ubique HTCC1062 3517625 YP_265722.1 CDS SAR11_0298 NC_007205.1 296040 297182 D possible blue light photoreceptor cryptochrome; DNA photolyase-like protein 296040..297182 Candidatus Pelagibacter ubique HTCC1062 3517626 YP_265723.1 CDS SAR11_0299 NC_007205.1 297179 297400 R transmembrane protein complement(297179..297400) Candidatus Pelagibacter ubique HTCC1062 3517627 YP_265724.1 CDS SAR11_0300 NC_007205.1 297397 298116 R glutamine amidotransferase complement(297397..298116) Candidatus Pelagibacter ubique HTCC1062 3517628 YP_265725.1 CDS marC NC_007205.1 298160 298768 R multiple antibiotic resistance protein MarC complement(298160..298768) Candidatus Pelagibacter ubique HTCC1062 3517629 YP_265726.1 CDS yqaA NC_007205.1 298810 299223 R DedA family, yqaA; transmembrane protein complement(298810..299223) Candidatus Pelagibacter ubique HTCC1062 3517630 YP_265727.1 CDS SAR11_0303 NC_007205.1 299342 300832 R deoxyribodipyrimidine photolyase-like protein complement(299342..300832) Candidatus Pelagibacter ubique HTCC1062 3517631 YP_265728.2 CDS SAR11_0304 NC_007205.1 300860 301570 D unknown specificity; short chain dehydrogenase 300860..301570 Candidatus Pelagibacter ubique HTCC1062 3517632 YP_265729.1 CDS yliI NC_007205.1 301545 302636 D glucose dehydrogenase 301545..302636 Candidatus Pelagibacter ubique HTCC1062 3517633 YP_265730.1 CDS SAR11_0306 NC_007205.1 302639 303691 R hypothetical protein complement(302639..303691) Candidatus Pelagibacter ubique HTCC1062 3517634 YP_265731.1 CDS folD NC_007205.1 303706 304551 R methylenetetrahydrofolate dehydrogenase complement(303706..304551) Candidatus Pelagibacter ubique HTCC1062 3517635 YP_265732.1 CDS SAR11_1722 NC_007205.1 304560 304850 R similar to Rhodopseudomonas palustris CGA009 gi|39647338|emb|CAE25859.1; hypothetical protein complement(304560..304850) Candidatus Pelagibacter ubique HTCC1062 3517636 YP_265733.1 CDS SAR11_0308 NC_007205.1 304847 305932 R mechanosensitive ion channel MscS complement(304847..305932) Candidatus Pelagibacter ubique HTCC1062 3517637 YP_265734.1 CDS hemD NC_007205.1 305935 306633 R uroporphyrinogen III synthase HEM4 complement(305935..306633) Candidatus Pelagibacter ubique HTCC1062 3517638 YP_265735.1 CDS hemC NC_007205.1 306635 307558 R hydroxymethylbilane synthase complement(306635..307558) Candidatus Pelagibacter ubique HTCC1062 3517639 YP_265736.1 CDS ygjD NC_007205.1 307618 308691 D O-sialoglycoprotein endopeptidase 307618..308691 Candidatus Pelagibacter ubique HTCC1062 3517640 YP_265737.1 CDS SAR11_0312 NC_007205.1 308772 309617 D sulfotransferase domain-containing protein 308772..309617 Candidatus Pelagibacter ubique HTCC1062 3517641 YP_265738.1 CDS SAR11_0313 NC_007205.1 309643 310056 D hypothetical protein 309643..310056 Candidatus Pelagibacter ubique HTCC1062 3517642 YP_265739.1 CDS acsA NC_007205.1 310070 312115 D acetyl-CoA synthase 310070..312115 Candidatus Pelagibacter ubique HTCC1062 3517643 YP_265740.1 CDS SAR11_0315 NC_007205.1 312112 312735 R potential esterase complement(312112..312735) Candidatus Pelagibacter ubique HTCC1062 3517644 YP_265741.1 CDS SAR11_1723 NC_007205.1 312873 313133 D hypothetical protein 312873..313133 Candidatus Pelagibacter ubique HTCC1062 3517645 YP_265742.1 CDS yjcG NC_007205.1 313133 314941 D SSF family Na(+)/solute symporter 313133..314941 Candidatus Pelagibacter ubique HTCC1062 3517646 YP_265743.1 CDS SAR11_1724 NC_007205.1 315020 315376 D hypothetical protein 315020..315376 Candidatus Pelagibacter ubique HTCC1062 3517647 YP_265744.1 CDS rpe NC_007205.1 315405 316064 D ribulose-phosphate 3-epimerase 315405..316064 Candidatus Pelagibacter ubique HTCC1062 3517648 YP_265745.1 CDS SAR11_0318 NC_007205.1 316069 317679 D hypothetical protein 316069..317679 Candidatus Pelagibacter ubique HTCC1062 3517649 YP_265746.1 CDS purH NC_007205.1 317679 319214 D bifunctional purine biosynthesis protein 317679..319214 Candidatus Pelagibacter ubique HTCC1062 3517650 YP_265747.1 CDS phhB NC_007205.1 319204 319548 R pterin-4-alpha-carbinolamine dehydratase complement(319204..319548) Candidatus Pelagibacter ubique HTCC1062 3517651 YP_265748.1 CDS SAR11_0322 NC_007205.1 319743 320384 D similar to the N-terminal domain of Lon protease; hypothetical protein 319743..320384 Candidatus Pelagibacter ubique HTCC1062 3517653 YP_265749.1 CDS ubiH NC_007205.1 320387 321520 R ubiquinone biosynthesis monooxgenase COQ6 complement(320387..321520) Candidatus Pelagibacter ubique HTCC1062 3517654 YP_265750.1 CDS ftsK NC_007205.1 321546 323636 D cell division protein 321546..323636 Candidatus Pelagibacter ubique HTCC1062 3517655 YP_265751.1 CDS SAR11_0325 NC_007205.1 323636 324190 D Outer membrane lipoprotein carrier protein 323636..324190 Candidatus Pelagibacter ubique HTCC1062 3517656 YP_265752.1 CDS SAR11_0326 NC_007205.1 324191 324694 R acetyltransferase complement(324191..324694) Candidatus Pelagibacter ubique HTCC1062 3517657 YP_265753.1 CDS SAR11_0327 NC_007205.1 324691 325056 R histidine triad (HIT) protein complement(324691..325056) Candidatus Pelagibacter ubique HTCC1062 3517658 YP_265754.1 CDS hisE NC_007205.1 325056 325361 R phosphoribosyl-ATP diphosphatase complement(325056..325361) Candidatus Pelagibacter ubique HTCC1062 3517659 YP_265755.1 CDS hisF NC_007205.1 325364 326119 R imidazole glycerol phosphate synthase subunit HisF complement(325364..326119) Candidatus Pelagibacter ubique HTCC1062 3517660 YP_265756.1 CDS hisA NC_007205.1 326112 326831 R phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase complement(326112..326831) Candidatus Pelagibacter ubique HTCC1062 3517661 YP_265757.1 CDS hisH NC_007205.1 326834 327460 R imidazole glycerol phosphate synthase subunit of hisH complement(326834..327460) Candidatus Pelagibacter ubique HTCC1062 3517662 YP_265758.1 CDS hisB NC_007205.1 327466 328056 R half of bifunctional hisB; imidazoleglycerol-phosphate dehydratase complement(327466..328056) Candidatus Pelagibacter ubique HTCC1062 3517663 YP_265759.1 CDS hslV NC_007205.1 328148 328663 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 328148..328663 Candidatus Pelagibacter ubique HTCC1062 3517664 YP_265760.1 CDS hslU NC_007205.1 328663 330030 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 328663..330030 Candidatus Pelagibacter ubique HTCC1062 3517665 YP_265761.1 CDS SAR11_0335 NC_007205.1 330020 330541 R Smr (small MutS related) protein complement(330020..330541) Candidatus Pelagibacter ubique HTCC1062 3517666 YP_265762.1 CDS SAR11_0336 NC_007205.1 330542 331135 R translocase complement(330542..331135) Candidatus Pelagibacter ubique HTCC1062 3517667 YP_265763.1 CDS fxsA NC_007205.1 331194 331616 D cytoplasmic membrane protein 331194..331616 Candidatus Pelagibacter ubique HTCC1062 3517668 YP_265764.1 CDS secB NC_007205.1 331600 332022 D SecB; protein export chaperone 331600..332022 Candidatus Pelagibacter ubique HTCC1062 3517669 YP_265765.1 CDS dnaQ NC_007205.1 332015 332686 R epsilon chain, dnaQ; DNA polymerase III complement(332015..332686) Candidatus Pelagibacter ubique HTCC1062 3517670 YP_265766.1 CDS coaE NC_007205.1 332688 333257 R dephospho-CoA kinase complement(332688..333257) Candidatus Pelagibacter ubique HTCC1062 3517671 YP_265767.1 CDS aroE NC_007205.1 333254 334051 R shikimate 5-dehydrogenase complement(333254..334051) Candidatus Pelagibacter ubique HTCC1062 3517672 YP_265768.1 CDS orfE NC_007205.1 334048 334635 R Maf-like protein complement(334048..334635) Candidatus Pelagibacter ubique HTCC1062 3517673 YP_265769.1 CDS SAR11_0343 NC_007205.1 334628 335452 R hypothetical protein complement(334628..335452) Candidatus Pelagibacter ubique HTCC1062 3517674 YP_265770.2 CDS hemE NC_007205.1 335737 336738 D uroporphyrinogen decarboxylase 335737..336738 Candidatus Pelagibacter ubique HTCC1062 3517675 YP_265771.1 CDS hemH NC_007205.1 336739 337773 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 336739..337773 Candidatus Pelagibacter ubique HTCC1062 3517676 YP_265772.1 CDS SAR11_0347 NC_007205.1 337766 338200 D cytochrome functioning/assembly related protein 337766..338200 Candidatus Pelagibacter ubique HTCC1062 3517677 YP_265773.1 CDS rho NC_007205.1 338267 339535 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 338267..339535 Candidatus Pelagibacter ubique HTCC1062 3517678 YP_265774.1 CDS SAR11_0349 NC_007205.1 339853 341526 D SPINDLY family; O-linked N-acetylglucosamine transferase 339853..341526 Candidatus Pelagibacter ubique HTCC1062 3517679 YP_265775.1 CDS trmE NC_007205.1 341586 342917 D tRNA modification GTPase 341586..342917 Candidatus Pelagibacter ubique HTCC1062 3517680 YP_265776.1 CDS gidA NC_007205.1 343083 344954 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 343083..344954 Candidatus Pelagibacter ubique HTCC1062 3517681 YP_265777.1 CDS gidB NC_007205.1 344954 345595 D glucose inhibited division protein 344954..345595 Candidatus Pelagibacter ubique HTCC1062 3517682 YP_265778.1 CDS SAR11_0353 NC_007205.1 345604 346398 D ParA family ATPase for plasmid partitioning and other plasmid related functions 345604..346398 Candidatus Pelagibacter ubique HTCC1062 3517683 YP_265779.1 CDS parB NC_007205.1 346398 347246 D chromosome partitioning protein 346398..347246 Candidatus Pelagibacter ubique HTCC1062 3517684 YP_265780.1 CDS holA NC_007205.1 347236 348231 R delta subunit, holA; DNA-directed DNA polymerase III complement(347236..348231) Candidatus Pelagibacter ubique HTCC1062 3517685 YP_265781.1 CDS SAR11_0356 NC_007205.1 348228 348692 R hypothetical protein complement(348228..348692) Candidatus Pelagibacter ubique HTCC1062 3517686 YP_265782.1 CDS leuS NC_007205.1 348696 351230 R leucyl-tRNA synthetase complement(348696..351230) Candidatus Pelagibacter ubique HTCC1062 3517687 YP_265783.1 CDS SAR11_0358 NC_007205.1 351261 351818 R hypothetical protein complement(351261..351818) Candidatus Pelagibacter ubique HTCC1062 3517688 YP_265784.1 CDS SAR11_0359 NC_007205.1 352028 353017 D porin 352028..353017 Candidatus Pelagibacter ubique HTCC1062 3517689 YP_265785.1 CDS SAR11_0360 NC_007205.1 353054 353596 R thiamine monophosphate synthase complement(353054..353596) Candidatus Pelagibacter ubique HTCC1062 3517690 YP_265786.1 CDS yggS NC_007205.1 353591 354241 D hypothetical protein 353591..354241 Candidatus Pelagibacter ubique HTCC1062 3517691 YP_265787.1 CDS SAR11_0362 NC_007205.1 354238 354726 R hypothetical protein complement(354238..354726) Candidatus Pelagibacter ubique HTCC1062 3517692 YP_265788.1 CDS SAR11_0363 NC_007205.1 354747 355328 D C-terminal effector; Bipartite response regulator 354747..355328 Candidatus Pelagibacter ubique HTCC1062 3517693 YP_265789.1 CDS frk NC_007205.1 355334 356263 R fructokinase complement(355334..356263) Candidatus Pelagibacter ubique HTCC1062 3517694 YP_265790.1 CDS nth NC_007205.1 356265 356918 R endonuclease III complement(356265..356918) Candidatus Pelagibacter ubique HTCC1062 3517695 YP_265791.1 CDS dapB NC_007205.1 356918 357694 R dihydrodipicolinate reductase complement(356918..357694) Candidatus Pelagibacter ubique HTCC1062 3517696 YP_265792.1 CDS SAR11_0367 NC_007205.1 357731 358861 R DnaJ; chaperone protein complement(357731..358861) Candidatus Pelagibacter ubique HTCC1062 3517697 YP_265793.1 CDS dnaK NC_007205.1 358894 360837 R DnaK (Heat shock protein 70, hsp70); chaperone protein complement(358894..360837) Candidatus Pelagibacter ubique HTCC1062 3517698 YP_265794.2 CDS grpE NC_007205.1 360900 361535 R heat shock protein GrpE complement(360900..361535) Candidatus Pelagibacter ubique HTCC1062 3517699 YP_265795.1 CDS SAR11_0370 NC_007205.1 361572 362174 D HAM1-like protein 361572..362174 Candidatus Pelagibacter ubique HTCC1062 3517700 YP_265796.1 CDS SAR11_0371 NC_007205.1 362158 363309 R transmembrane receptor complement(362158..363309) Candidatus Pelagibacter ubique HTCC1062 3517701 YP_265797.1 CDS SAR11_0372 NC_007205.1 363342 364205 D methylase or methyltransferase 363342..364205 Candidatus Pelagibacter ubique HTCC1062 3517702 YP_265798.1 CDS SAR11_0374 NC_007205.1 364195 364788 D possible periplasmic protein; phospholipid-binding domain-containing protein 364195..364788 Candidatus Pelagibacter ubique HTCC1062 3517703 YP_265799.2 CDS maeB NC_007205.1 364785 367073 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(364785..367073) Candidatus Pelagibacter ubique HTCC1062 3517704 YP_265800.1 CDS mviN NC_007205.1 367124 368650 D virulence factor MVIN-like 367124..368650 Candidatus Pelagibacter ubique HTCC1062 3517705 YP_265801.1 CDS trpS NC_007205.1 368652 369653 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 368652..369653 Candidatus Pelagibacter ubique HTCC1062 3517706 YP_265802.1 CDS SAR11_0378 NC_007205.1 369707 370249 D NifU-like domain-containing protein 369707..370249 Candidatus Pelagibacter ubique HTCC1062 3517707 YP_265803.1 CDS bax NC_007205.1 370252 371367 D Bax protein (hydrolyses peptidoglycan) 370252..371367 Candidatus Pelagibacter ubique HTCC1062 3517708 YP_265804.1 CDS cda1 NC_007205.1 371364 372284 R polysaccharide deacetylase complement(371364..372284) Candidatus Pelagibacter ubique HTCC1062 3517709 YP_265805.1 CDS SAR11_0381 NC_007205.1 372370 372756 D similar to unknown environmental sequence; hypothetical protein 372370..372756 Candidatus Pelagibacter ubique HTCC1062 3517710 YP_265806.1 CDS fur NC_007205.1 372766 373176 D ferric uptake regulation protein 372766..373176 Candidatus Pelagibacter ubique HTCC1062 3517711 YP_265807.1 CDS miaB NC_007205.1 373181 374521 D MiaB; tRNA-i(6)A37 modification enzyme 373181..374521 Candidatus Pelagibacter ubique HTCC1062 3517712 YP_265808.1 CDS phoH NC_007205.1 374524 375525 D PhoH-like protein 374524..375525 Candidatus Pelagibacter ubique HTCC1062 3517713 YP_265809.1 CDS SAR11_0385 NC_007205.1 375518 375979 D hypothetical protein 375518..375979 Candidatus Pelagibacter ubique HTCC1062 3517714 YP_265810.1 CDS lnt NC_007205.1 375981 377525 D apolipoprotein N-acyltransferase 375981..377525 Candidatus Pelagibacter ubique HTCC1062 3517715 YP_265811.1 CDS metK NC_007205.1 377518 378687 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 377518..378687 Candidatus Pelagibacter ubique HTCC1062 3517716 YP_265812.1 CDS nusA NC_007205.1 378786 380339 D transcription termination factor 378786..380339 Candidatus Pelagibacter ubique HTCC1062 3517717 YP_265813.1 CDS infB NC_007205.1 380350 382554 D protein translation initiation factor 2 380350..382554 Candidatus Pelagibacter ubique HTCC1062 3517718 YP_265814.1 CDS rbfA NC_007205.1 382554 382922 D ribosome-binding factor A 382554..382922 Candidatus Pelagibacter ubique HTCC1062 3517719 YP_265815.1 CDS SAR11_0391 NC_007205.1 382936 383184 D 30S ribosomal protein S15 382936..383184 Candidatus Pelagibacter ubique HTCC1062 3517720 YP_265816.1 CDS pnp NC_007205.1 383206 385278 D polynucleotide phosphorylase 383206..385278 Candidatus Pelagibacter ubique HTCC1062 3517721 YP_265817.1 CDS SAR11_0393 NC_007205.1 385353 386048 D SAM-dependent methyltransferase 385353..386048 Candidatus Pelagibacter ubique HTCC1062 3517722 YP_265818.1 CDS SAR11_0394 NC_007205.1 386111 386503 R hypothetical protein complement(386111..386503) Candidatus Pelagibacter ubique HTCC1062 3517723 YP_265819.1 CDS fabI NC_007205.1 386597 387373 R enoyl-ACP reductase complement(386597..387373) Candidatus Pelagibacter ubique HTCC1062 3517724 YP_265820.1 CDS fabB NC_007205.1 387383 388594 R 3-oxoacyl-ACP synthase complement(387383..388594) Candidatus Pelagibacter ubique HTCC1062 3517725 YP_265821.1 CDS fabA NC_007205.1 388594 389094 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(388594..389094) Candidatus Pelagibacter ubique HTCC1062 3517726 YP_265822.1 CDS SAR11_0398 NC_007205.1 389168 389596 D Fur-like protein; ferric uptake regulator family protein 389168..389596 Candidatus Pelagibacter ubique HTCC1062 3517727 YP_265823.1 CDS rbr NC_007205.1 389701 390117 D rubrerythrin 389701..390117 Candidatus Pelagibacter ubique HTCC1062 3517728 YP_265824.1 CDS glpC NC_007205.1 390175 391506 D anaerobic glycerol-3-phosphate dehydrogenase subunit C 390175..391506 Candidatus Pelagibacter ubique HTCC1062 3517729 YP_265825.1 CDS SAR11_0401 NC_007205.1 391509 392102 D hypothetical protein 391509..392102 Candidatus Pelagibacter ubique HTCC1062 3517730 YP_265826.1 CDS SAR11_0402 NC_007205.1 392095 392544 R hypothetical protein complement(392095..392544) Candidatus Pelagibacter ubique HTCC1062 3517731 YP_265827.1 CDS moeB NC_007205.1 392541 393296 R MoeB; molybdopterin biosynthesis protein complement(392541..393296) Candidatus Pelagibacter ubique HTCC1062 3517732 YP_265828.2 CDS dut NC_007205.1 393293 393730 R deoxyuridine 5'-triphosphate nucleotidohydrolase complement(393293..393730) Candidatus Pelagibacter ubique HTCC1062 3517733 YP_265829.1 CDS dfp NC_007205.1 393737 394942 R phosphopantothenoylcysteine decarboxylase complement(393737..394942) Candidatus Pelagibacter ubique HTCC1062 3517734 YP_265830.2 CDS aarF NC_007205.1 394951 396519 R AarF; ubiquinone biosynthesis protein complement(394951..396519) Candidatus Pelagibacter ubique HTCC1062 3517735 YP_265831.1 CDS ubiE NC_007205.1 396519 397223 R ubiquinone/menaquinone biosynthesis methyltransferase complement(396519..397223) Candidatus Pelagibacter ubique HTCC1062 3517736 YP_265832.1 CDS mutM NC_007205.1 397259 398122 D formamidopyrimidine-DNA glycosylase 397259..398122 Candidatus Pelagibacter ubique HTCC1062 3517737 YP_265833.1 CDS rpsT NC_007205.1 398173 398433 D 30S ribosomal protein S20 398173..398433 Candidatus Pelagibacter ubique HTCC1062 3517738 YP_265834.1 CDS dnaA NC_007205.1 398915 400249 D chromosome replication initiator DnaA 398915..400249 Candidatus Pelagibacter ubique HTCC1062 3517739 YP_265835.2 CDS dnaN NC_007205.1 400239 401351 D beta chain, dnaN; DNA polymerase III 400239..401351 Candidatus Pelagibacter ubique HTCC1062 3517740 YP_265836.1 CDS plsC NC_007205.1 401348 402049 R 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(401348..402049) Candidatus Pelagibacter ubique HTCC1062 3517741 YP_265837.1 CDS lysA NC_007205.1 402062 403276 R diaminopimelate decarboxylase complement(402062..403276) Candidatus Pelagibacter ubique HTCC1062 3517742 YP_265838.1 CDS SAR11_0414 NC_007205.1 403276 403392 R hypothetical protein complement(403276..403392) Candidatus Pelagibacter ubique HTCC1062 3517743 YP_265839.1 CDS argH NC_007205.1 403394 404782 R argininosuccinate lyase complement(403394..404782) Candidatus Pelagibacter ubique HTCC1062 3517744 YP_265840.1 CDS tlpA NC_007205.1 404807 405322 D thiol:disulfide interchange protein 404807..405322 Candidatus Pelagibacter ubique HTCC1062 3517745 YP_265841.1 CDS SAR11_1725 NC_007205.1 405365 405535 D hypothetical protein 405365..405535 Candidatus Pelagibacter ubique HTCC1062 3517746 YP_265842.1 CDS SAR11_0417 NC_007205.1 405618 406229 D serine esterase 405618..406229 Candidatus Pelagibacter ubique HTCC1062 3517747 YP_265843.1 CDS mcrA NC_007205.1 406281 406847 D 5-methylcytosine-specific restriction enzyme A 406281..406847 Candidatus Pelagibacter ubique HTCC1062 3517748 YP_265844.1 CDS coq7 NC_007205.1 406848 407381 R Coq7 family protein complement(406848..407381) Candidatus Pelagibacter ubique HTCC1062 3517749 YP_265845.1 CDS dsbB NC_007205.1 407365 407865 R DsbB; disulfide bond formation protein complement(407365..407865) Candidatus Pelagibacter ubique HTCC1062 3517750 YP_265846.1 CDS dedA NC_007205.1 407852 408448 R DedA; DedA family protein complement(407852..408448) Candidatus Pelagibacter ubique HTCC1062 3517751 YP_265847.1 CDS faa1 NC_007205.1 408798 410315 D long-chain fatty acid CoA ligase (AMP-binding) 408798..410315 Candidatus Pelagibacter ubique HTCC1062 3517753 YP_265848.1 CDS carD NC_007205.1 410672 411571 R similar to Myxococcus xanthus CarD; similar to COG1329: Transcriptional regulators; hypothetical protein complement(410672..411571) Candidatus Pelagibacter ubique HTCC1062 3517754 YP_265849.1 CDS fdxA NC_007205.1 411528 411854 R ferredoxin complement(411528..411854) Candidatus Pelagibacter ubique HTCC1062 3517755 YP_265850.1 CDS SAR11_0425 NC_007205.1 411851 412276 R hypothetical protein complement(411851..412276) Candidatus Pelagibacter ubique HTCC1062 3517756 YP_265851.1 CDS suv3 NC_007205.1 412276 414756 R ATP-dependent helicase complement(412276..414756) Candidatus Pelagibacter ubique HTCC1062 3517757 YP_265852.1 CDS SAR11_0427 NC_007205.1 414886 415407 R thioesterase complement(414886..415407) Candidatus Pelagibacter ubique HTCC1062 3517758 YP_265853.1 CDS thlA NC_007205.1 415586 416773 D Acetyl-CoA acetyltransferase 415586..416773 Candidatus Pelagibacter ubique HTCC1062 3517262 YP_265854.1 CDS aceE NC_007205.1 416904 419942 D pyruvate dehydrogenase (lipoamide) e1 component 416904..419942 Candidatus Pelagibacter ubique HTCC1062 3517263 YP_265855.1 CDS aceF NC_007205.1 419944 421215 D dihydrolipoamide S-acetyltransferase 419944..421215 Candidatus Pelagibacter ubique HTCC1062 3517264 YP_265856.1 CDS ydeD NC_007205.1 421222 422109 D Drug/Metabolite Exporter family; transporter 421222..422109 Candidatus Pelagibacter ubique HTCC1062 3517265 YP_265857.1 CDS bacA NC_007205.1 422106 422876 R bacitracin resistance undecaprenol kinase complement(422106..422876) Candidatus Pelagibacter ubique HTCC1062 3517266 YP_265858.1 CDS gltD NC_007205.1 423061 424500 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 423061..424500 Candidatus Pelagibacter ubique HTCC1062 3517267 YP_265859.1 CDS gltB NC_007205.1 424500 429005 D glutamate synthase large subunit 424500..429005 Candidatus Pelagibacter ubique HTCC1062 3517268 YP_265860.1 CDS SAR11_0435 NC_007205.1 429007 429882 D nucleoside-diphosphate-sugar epimerase 429007..429882 Candidatus Pelagibacter ubique HTCC1062 3517269 YP_265861.1 CDS SAR11_0436 NC_007205.1 429853 430506 R alpha/beta hydrolase complement(429853..430506) Candidatus Pelagibacter ubique HTCC1062 3517270 YP_265862.1 CDS capM NC_007205.1 430651 431805 D group 1 family protein; glycosyl transferase family protein 430651..431805 Candidatus Pelagibacter ubique HTCC1062 3517271 YP_265863.1 CDS thrS NC_007205.1 431806 433722 D threonyl-tRNA synthetase 431806..433722 Candidatus Pelagibacter ubique HTCC1062 3517272 YP_265864.1 CDS infC NC_007205.1 433723 434268 D translation initiation factor IF-3 433723..434268 Candidatus Pelagibacter ubique HTCC1062 3517273 YP_265865.1 CDS rpmI NC_007205.1 434322 434528 D 50S ribosomal protein L35 434322..434528 Candidatus Pelagibacter ubique HTCC1062 3517274 YP_265866.1 CDS rplT NC_007205.1 434530 434886 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 434530..434886 Candidatus Pelagibacter ubique HTCC1062 3517275 YP_265867.1 CDS pheS NC_007205.1 434930 435997 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 434930..435997 Candidatus Pelagibacter ubique HTCC1062 3517276 YP_265868.1 CDS pheT NC_007205.1 435994 438402 D phenylalanine-tRNA ligase 435994..438402 Candidatus Pelagibacter ubique HTCC1062 3517277 YP_265869.1 CDS lepA NC_007205.1 438405 440213 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 438405..440213 Candidatus Pelagibacter ubique HTCC1062 3517278 YP_265870.1 CDS SAR11_0445 NC_007205.1 440311 441081 R methyltransferase FkbM complement(440311..441081) Candidatus Pelagibacter ubique HTCC1062 3517280 YP_265871.1 CDS gyrB NC_007205.1 441234 443291 D DNA topoisomerase subunit B 441234..443291 Candidatus Pelagibacter ubique HTCC1062 3517281 YP_265872.1 CDS regB NC_007205.1 443294 444574 D sensor histidine kinase 443294..444574 Candidatus Pelagibacter ubique HTCC1062 3517282 YP_265873.1 CDS cobT NC_007205.1 444571 446379 R cobalamin biosynthesis protein CobT complement(444571..446379) Candidatus Pelagibacter ubique HTCC1062 3517283 YP_265874.1 CDS cobS NC_007205.1 446380 447354 R cobalamin biosynthesis protein CobS complement(446380..447354) Candidatus Pelagibacter ubique HTCC1062 3517284 YP_265875.1 CDS SAR11_0450 NC_007205.1 447344 447871 R dnaJ-related; molecular chaperone complement(447344..447871) Candidatus Pelagibacter ubique HTCC1062 3517285 YP_265876.1 CDS SAR11_0451 NC_007205.1 447870 448157 D BolA-like protein 447870..448157 Candidatus Pelagibacter ubique HTCC1062 3517286 YP_265877.1 CDS aroB NC_007205.1 448146 449252 R 3-dehydroquinate synthase complement(448146..449252) Candidatus Pelagibacter ubique HTCC1062 3517287 YP_265878.1 CDS aroK NC_007205.1 449239 449751 R shikimate kinase complement(449239..449751) Candidatus Pelagibacter ubique HTCC1062 3517288 YP_265879.1 CDS SAR11_0454 NC_007205.1 449810 449986 D hypothetical protein 449810..449986 Candidatus Pelagibacter ubique HTCC1062 3517289 YP_265880.1 CDS SAR11_0455 NC_007205.1 450066 451721 D hypothetical protein 450066..451721 Candidatus Pelagibacter ubique HTCC1062 3517290 YP_265881.1 CDS def NC_007205.1 451748 452266 D peptide deformylase 451748..452266 Candidatus Pelagibacter ubique HTCC1062 3517291 YP_265882.1 CDS fmt NC_007205.1 452267 453199 D methionyl-tRNA formyltransferase 452267..453199 Candidatus Pelagibacter ubique HTCC1062 3517292 YP_265883.1 CDS truA NC_007205.1 453192 453932 D tRNA pseudouridine synthase A 453192..453932 Candidatus Pelagibacter ubique HTCC1062 3517293 YP_265884.1 CDS set1 NC_007205.1 453922 454401 R nuclear protein SET complement(453922..454401) Candidatus Pelagibacter ubique HTCC1062 3517294 YP_265885.1 CDS acuC NC_007205.1 454433 455362 R histone deacetylase family protein complement(454433..455362) Candidatus Pelagibacter ubique HTCC1062 3517295 YP_265886.1 CDS SAR11_0461 NC_007205.1 455363 455557 R hypothetical protein complement(455363..455557) Candidatus Pelagibacter ubique HTCC1062 3517296 YP_265887.1 CDS dapE NC_007205.1 455557 456711 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(455557..456711) Candidatus Pelagibacter ubique HTCC1062 3517297 YP_265888.1 CDS dapD NC_007205.1 456712 457539 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(456712..457539) Candidatus Pelagibacter ubique HTCC1062 3517298 YP_265889.1 CDS SAR11_0464 NC_007205.1 457569 458240 R subfamily IA, variant 3; HAD-superfamily hydrolase complement(457569..458240) Candidatus Pelagibacter ubique HTCC1062 3517226 YP_265890.1 CDS argB NC_007205.1 458237 459103 R acetylglutamate kinase complement(458237..459103) Candidatus Pelagibacter ubique HTCC1062 3517227 YP_265891.1 CDS yidC NC_007205.1 459104 460780 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(459104..460780) Candidatus Pelagibacter ubique HTCC1062 3517228 YP_265892.1 CDS SAR11_0467 NC_007205.1 460780 461031 R hypothetical protein complement(460780..461031) Candidatus Pelagibacter ubique HTCC1062 3517229 YP_265893.1 CDS SAR11_0468 NC_007205.1 461031 461375 R ribonuclease P protein complement(461031..461375) Candidatus Pelagibacter ubique HTCC1062 3517230 YP_003858679.1 CDS SAR11_1500 NC_007205.1 461386 461550 R hypothetical protein complement(461386..461550) Candidatus Pelagibacter ubique HTCC1062 9714972 YP_265894.1 CDS SAR11_0469 NC_007205.1 461643 462362 D DedA family protein 461643..462362 Candidatus Pelagibacter ubique HTCC1062 3517231 YP_265895.1 CDS SAR11_0470 NC_007205.1 462540 462737 D hypothetical protein 462540..462737 Candidatus Pelagibacter ubique HTCC1062 3517233 YP_265896.1 CDS SAR11_0471 NC_007205.1 462737 462838 D hypothetical protein 462737..462838 Candidatus Pelagibacter ubique HTCC1062 3517234 YP_265897.1 CDS dcd NC_007205.1 462838 463395 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 462838..463395 Candidatus Pelagibacter ubique HTCC1062 3517235 YP_265898.1 CDS murA NC_007205.1 463398 464651 D UDP-N-acetylglucosamine 1-carboxyvinyltransferase 463398..464651 Candidatus Pelagibacter ubique HTCC1062 3517236 YP_265899.1 CDS SAR11_0474 NC_007205.1 464651 465046 D hypothetical protein 464651..465046 Candidatus Pelagibacter ubique HTCC1062 3517237 YP_265900.1 CDS hisD NC_007205.1 465046 466332 D histidinol dehydrogenase 465046..466332 Candidatus Pelagibacter ubique HTCC1062 3517238 YP_265901.1 CDS infA NC_007205.1 466335 466550 D translation initiation factor IF-1 466335..466550 Candidatus Pelagibacter ubique HTCC1062 3517239 YP_265902.1 CDS cspE NC_007205.1 466720 466932 D cold shock protein 466720..466932 Candidatus Pelagibacter ubique HTCC1062 3517241 YP_265903.1 CDS hisS NC_007205.1 467248 468645 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 467248..468645 Candidatus Pelagibacter ubique HTCC1062 3517207 YP_265904.1 CDS hisZ NC_007205.1 468623 469675 D May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase 468623..469675 Candidatus Pelagibacter ubique HTCC1062 3517208 YP_265905.1 CDS hisG NC_007205.1 469675 470364 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase 469675..470364 Candidatus Pelagibacter ubique HTCC1062 3517209 YP_265906.1 CDS rmuC NC_007205.1 470546 471643 D DNA recombination protein 470546..471643 Candidatus Pelagibacter ubique HTCC1062 3517210 YP_265907.1 CDS SAR11_0482 NC_007205.1 471726 472370 D possible atypical protein kinase; hypothetical protein 471726..472370 Candidatus Pelagibacter ubique HTCC1062 3517211 YP_265908.1 CDS sbcB NC_007205.1 472372 473799 D exodeoxyribonuclease I 472372..473799 Candidatus Pelagibacter ubique HTCC1062 3517212 YP_265909.1 CDS trxA NC_007205.1 473875 474192 D thioredoxin 473875..474192 Candidatus Pelagibacter ubique HTCC1062 3517213 YP_265910.1 CDS folC NC_007205.1 474189 475457 R bifunctional folylpolyglutamate synthase/dihydrofolate synthase FolC complement(474189..475457) Candidatus Pelagibacter ubique HTCC1062 3517214 YP_265911.1 CDS accD NC_007205.1 475411 476340 R Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta complement(475411..476340) Candidatus Pelagibacter ubique HTCC1062 3517215 YP_265912.1 CDS trpA NC_007205.1 476337 477134 R tryptophan synthase subunit alpha complement(476337..477134) Candidatus Pelagibacter ubique HTCC1062 3517216 YP_265913.1 CDS trpB NC_007205.1 477136 478368 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(477136..478368) Candidatus Pelagibacter ubique HTCC1062 3517217 YP_265914.1 CDS trpF NC_007205.1 478358 478987 R N-(5'-phosphoribosyl)anthranilate isomerase complement(478358..478987) Candidatus Pelagibacter ubique HTCC1062 3517218 YP_265915.1 CDS pyrF NC_007205.1 478984 479676 R orotidine 5'-phosphate decarboxylase complement(478984..479676) Candidatus Pelagibacter ubique HTCC1062 3517219 YP_265916.1 CDS himD NC_007205.1 479666 479956 R integration host factor beta-subunit (IHF-beta) complement(479666..479956) Candidatus Pelagibacter ubique HTCC1062 3517220 YP_265917.1 CDS rpsA NC_007205.1 479960 481690 R 30S ribosomal protein S1 complement(479960..481690) Candidatus Pelagibacter ubique HTCC1062 3517221 YP_265918.1 CDS cmk NC_007205.1 481690 482343 R cytidylate kinase complement(481690..482343) Candidatus Pelagibacter ubique HTCC1062 3517222 YP_265919.2 CDS aroA NC_007205.1 482340 483668 R 3-phosphoshikimate 1-carboxyvinyltransferase complement(482340..483668) Candidatus Pelagibacter ubique HTCC1062 3517223 YP_265920.1 CDS yhbG NC_007205.1 483672 484448 R YhbG; sulfate/thiosulfate import ATP-binding protein cysA complement(483672..484448) Candidatus Pelagibacter ubique HTCC1062 3517224 YP_265921.1 CDS SAR11_0496 NC_007205.1 484450 485034 R hypothetical protein complement(484450..485034) Candidatus Pelagibacter ubique HTCC1062 3517225 YP_265922.1 CDS gutQ NC_007205.1 485035 486006 R arabinose 5-phosphate isomerase complement(485035..486006) Candidatus Pelagibacter ubique HTCC1062 3517187 YP_265923.1 CDS rnd NC_007205.1 486007 486618 R ribonuclease D complement(486007..486618) Candidatus Pelagibacter ubique HTCC1062 3517188 YP_265924.1 CDS SAR11_0499 NC_007205.1 486635 487603 D NADH-ubiquinone oxireductase 486635..487603 Candidatus Pelagibacter ubique HTCC1062 3517189 YP_265925.1 CDS SAR11_0500 NC_007205.1 487775 488275 R hypothetical protein complement(487775..488275) Candidatus Pelagibacter ubique HTCC1062 3517190 YP_265926.1 CDS SAR11_0501 NC_007205.1 488408 489211 D YadH-like ABC-2-type transport protein 488408..489211 Candidatus Pelagibacter ubique HTCC1062 3517191 YP_265927.1 CDS argD NC_007205.1 489215 490381 D acetylornithine aminotransferase 489215..490381 Candidatus Pelagibacter ubique HTCC1062 3517192 YP_265928.1 CDS argF NC_007205.1 490384 491313 D ornithine carbamoyltransferase 490384..491313 Candidatus Pelagibacter ubique HTCC1062 3517193 YP_265929.1 CDS cycM NC_007205.1 491305 491844 R cytochrome C complement(491305..491844) Candidatus Pelagibacter ubique HTCC1062 3517194 YP_265930.1 CDS kdsB NC_007205.1 491948 492688 D 3-deoxy-manno-octulosonate cytidylyltransferase 491948..492688 Candidatus Pelagibacter ubique HTCC1062 3517195 YP_265931.1 CDS pheA NC_007205.1 492690 493520 D prephenate dehydratase 492690..493520 Candidatus Pelagibacter ubique HTCC1062 3517196 YP_265932.1 CDS dnaX NC_007205.1 493665 495338 D DNA-directed DNA polymerase subunit gamma/tau 493665..495338 Candidatus Pelagibacter ubique HTCC1062 3517197 YP_265933.1 CDS ybaB NC_007205.1 495342 495659 D YbaB family COG0; hypothetical protein 495342..495659 Candidatus Pelagibacter ubique HTCC1062 3517198 YP_265934.1 CDS recR NC_007205.1 495664 496275 D recR-like protein 495664..496275 Candidatus Pelagibacter ubique HTCC1062 3517199 YP_265935.1 CDS glcB NC_007205.1 496262 498457 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(496262..498457) Candidatus Pelagibacter ubique HTCC1062 3517200 YP_265936.1 CDS accA NC_007205.1 498707 499813 D similar to carboxyltransferase alpha chain - Aquifex aeolicus; acetyl-CoA carboxylase 498707..499813 Candidatus Pelagibacter ubique HTCC1062 3517201 YP_265937.1 CDS secA NC_007205.1 499808 502372 R preprotein translocase subunit SecA complement(499808..502372) Candidatus Pelagibacter ubique HTCC1062 3517202 YP_265938.2 CDS argJ NC_007205.1 502438 503739 D ArgJ family protein 502438..503739 Candidatus Pelagibacter ubique HTCC1062 3517203 YP_265939.1 CDS SAR11_0514 NC_007205.1 503781 504212 D similar to protein of unknown function (DUF1178); hypothetical protein 503781..504212 Candidatus Pelagibacter ubique HTCC1062 3517204 YP_265940.1 CDS ubiG NC_007205.1 504209 504931 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(504209..504931) Candidatus Pelagibacter ubique HTCC1062 3517205 YP_265941.1 CDS lysC NC_007205.1 504997 506208 D aspartate kinase 504997..506208 Candidatus Pelagibacter ubique HTCC1062 3517206 YP_265942.1 CDS ispG NC_007205.1 506212 507312 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 506212..507312 Candidatus Pelagibacter ubique HTCC1062 3517172 YP_265943.1 CDS prfA NC_007205.1 507318 508391 D protein release factor class I 507318..508391 Candidatus Pelagibacter ubique HTCC1062 3517173 YP_265944.1 CDS hemK NC_007205.1 508393 509235 D hypothetical protein 508393..509235 Candidatus Pelagibacter ubique HTCC1062 3517174 YP_265945.1 CDS SAR11_0520 NC_007205.1 509250 509726 D similar to hypothetical protein EBAC000-62A03.2; hypothetical protein 509250..509726 Candidatus Pelagibacter ubique HTCC1062 3517175 YP_265946.1 CDS yebA NC_007205.1 509729 511027 R M23/M37 peptidase complement(509729..511027) Candidatus Pelagibacter ubique HTCC1062 3517176 YP_265947.1 CDS SAR11_0523 NC_007205.1 516442 516975 D protein function by Fugue structure prediction; glucose-6-phosphate isomerase 516442..516975 Candidatus Pelagibacter ubique HTCC1062 3517181 YP_265948.1 CDS SAR11_0524 NC_007205.1 516956 517402 D hypothetical protein 516956..517402 Candidatus Pelagibacter ubique HTCC1062 3517182 YP_265949.1 CDS SAR11_0525 NC_007205.1 517419 518273 D NAD-dependent epimerase/dehydratase 517419..518273 Candidatus Pelagibacter ubique HTCC1062 3517183 YP_265950.1 CDS SAR11_0526 NC_007205.1 518270 519133 R NAD-dependent epimerase/dehydratase complement(518270..519133) Candidatus Pelagibacter ubique HTCC1062 3517184 YP_265951.1 CDS SAR11_0527 NC_007205.1 519133 520869 R acetolactate synthase II large chain complement(519133..520869) Candidatus Pelagibacter ubique HTCC1062 3517185 YP_265952.1 CDS smtA NC_007205.1 520922 521581 D protein-L-isoaspartate(D-aspartate) O-methyltransferase 520922..521581 Candidatus Pelagibacter ubique HTCC1062 3517186 YP_265953.1 CDS SAR11_0529 NC_007205.1 521587 522627 D zinc-containing alcohol dehydrogenase 521587..522627 Candidatus Pelagibacter ubique HTCC1062 3517152 YP_265954.1 CDS SAR11_0530 NC_007205.1 522650 523831 D cyclopropane-fatty-acyl-phospholipid synthase 522650..523831 Candidatus Pelagibacter ubique HTCC1062 3517153 YP_265955.1 CDS SAR11_0531 NC_007205.1 523831 524610 D 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-ACP reductase 523831..524610 Candidatus Pelagibacter ubique HTCC1062 3517154 YP_265956.1 CDS SAR11_0532 NC_007205.1 524613 525977 R FAD oxidase family protein complement(524613..525977) Candidatus Pelagibacter ubique HTCC1062 3517155 YP_265957.1 CDS SAR11_0533 NC_007205.1 526036 526809 R methyltransferase complement(526036..526809) Candidatus Pelagibacter ubique HTCC1062 3517156 YP_265958.1 CDS SAR11_0534 NC_007205.1 526790 528139 D aminotransferase 526790..528139 Candidatus Pelagibacter ubique HTCC1062 3517157 YP_265959.1 CDS SAR11_0535 NC_007205.1 528210 529664 R deoxynucleotidase complement(528210..529664) Candidatus Pelagibacter ubique HTCC1062 3517158 YP_265960.1 CDS tktC NC_007205.1 529658 530587 R transketolase complement(529658..530587) Candidatus Pelagibacter ubique HTCC1062 3517159 YP_265961.1 CDS tktN NC_007205.1 530587 531378 R transketolase complement(530587..531378) Candidatus Pelagibacter ubique HTCC1062 3517160 YP_265962.1 CDS SAR11_0538 NC_007205.1 531418 532356 D GalE-like protein; UDP-glucose 4 epimerase 531418..532356 Candidatus Pelagibacter ubique HTCC1062 3517161 YP_265963.1 CDS rfaE NC_007205.1 532349 533857 D cytidylyltransferase/carbohydrate (or pyrimidine) kinase 532349..533857 Candidatus Pelagibacter ubique HTCC1062 3517162 YP_265964.1 CDS spsA NC_007205.1 533858 534580 D spsA-like glycosyl transferase 533858..534580 Candidatus Pelagibacter ubique HTCC1062 3517163 YP_265965.1 CDS rfbB NC_007205.1 534588 535577 D dtdpglucose 4,6-dehydratase 534588..535577 Candidatus Pelagibacter ubique HTCC1062 3517164 YP_265966.1 CDS SAR11_0542 NC_007205.1 535581 537269 R hypothetical protein complement(535581..537269) Candidatus Pelagibacter ubique HTCC1062 3517165 YP_265967.1 CDS SAR11_0543 NC_007205.1 537246 537701 D hypothetical protein 537246..537701 Candidatus Pelagibacter ubique HTCC1062 3517166 YP_265968.1 CDS SAR11_0544 NC_007205.1 537702 538163 D hypothetical protein 537702..538163 Candidatus Pelagibacter ubique HTCC1062 3517167 YP_265969.1 CDS gmhA NC_007205.1 538166 538732 D phosphoheptose isomerase 538166..538732 Candidatus Pelagibacter ubique HTCC1062 3517168 YP_265970.1 CDS gmhB NC_007205.1 538725 539216 R D-glycero-D-manno-heptose 1,7 bisphophate phosphatase complement(538725..539216) Candidatus Pelagibacter ubique HTCC1062 3517169 YP_265971.1 CDS SAR11_0547 NC_007205.1 539250 540239 R D amino acid oxidase (DAO) family protein complement(539250..540239) Candidatus Pelagibacter ubique HTCC1062 3517170 YP_265972.1 CDS SAR11_0548 NC_007205.1 540307 541656 R hypothetical protein complement(540307..541656) Candidatus Pelagibacter ubique HTCC1062 3517171 YP_265973.1 CDS SAR11_0549 NC_007205.1 541643 542854 R hypothetical protein complement(541643..542854) Candidatus Pelagibacter ubique HTCC1062 3517133 YP_265974.1 CDS rfaG NC_007205.1 543013 544125 R glycosyl transferase family protein complement(543013..544125) Candidatus Pelagibacter ubique HTCC1062 3517134 YP_265975.1 CDS SAR11_0551 NC_007205.1 544167 545240 R glycosyl transferase family protein complement(544167..545240) Candidatus Pelagibacter ubique HTCC1062 3517135 YP_265976.1 CDS lgtF NC_007205.1 545259 546092 D spsA-like protein 545259..546092 Candidatus Pelagibacter ubique HTCC1062 3517136 YP_265977.1 CDS SAR11_0553 NC_007205.1 546079 547206 D DegT/DnrJ/EryC1/StrS aminotransferase 546079..547206 Candidatus Pelagibacter ubique HTCC1062 3517137 YP_265978.1 CDS SAR11_0554 NC_007205.1 547210 548943 D carbamoyltransferase 547210..548943 Candidatus Pelagibacter ubique HTCC1062 3517138 YP_265979.1 CDS SAR11_0555 NC_007205.1 548924 549535 D CMAS family protein 548924..549535 Candidatus Pelagibacter ubique HTCC1062 3517139 YP_265980.1 CDS SAR11_0556 NC_007205.1 549536 550669 R glycosyl transferase family protein complement(549536..550669) Candidatus Pelagibacter ubique HTCC1062 3517140 YP_265981.1 CDS SAR11_0557 NC_007205.1 550866 551843 D glycosyl transferase family protein 550866..551843 Candidatus Pelagibacter ubique HTCC1062 3517141 YP_265982.1 CDS SAR11_0558 NC_007205.1 551827 552528 D cyclopropane-fatty-acyl-phospholipid 551827..552528 Candidatus Pelagibacter ubique HTCC1062 3517142 YP_265983.1 CDS rfaK NC_007205.1 552525 553595 R 1,2-N-acetylglucosaminetransferase complement(552525..553595) Candidatus Pelagibacter ubique HTCC1062 3517143 YP_265984.1 CDS SAR11_0560 NC_007205.1 553607 554311 D PCMT - protein-L-isoaspartate(D-aspartate) O-methyltransferase 553607..554311 Candidatus Pelagibacter ubique HTCC1062 3517144 YP_265985.1 CDS SAR11_0561 NC_007205.1 554312 555052 D oxidoreductase family protein 554312..555052 Candidatus Pelagibacter ubique HTCC1062 3517145 YP_265986.1 CDS wbyL NC_007205.1 555224 555991 R glycosyl transferase family protein complement(555224..555991) Candidatus Pelagibacter ubique HTCC1062 3517146 YP_265987.1 CDS SAR11_1726 NC_007205.1 555992 556138 R hypothetical protein complement(555992..556138) Candidatus Pelagibacter ubique HTCC1062 3517147 YP_265988.1 CDS SAR11_0564 NC_007205.1 556146 556334 R reductase complement(556146..556334) Candidatus Pelagibacter ubique HTCC1062 3517148 YP_265989.1 CDS SAR11_0565 NC_007205.1 556386 556751 D hypothetical protein 556386..556751 Candidatus Pelagibacter ubique HTCC1062 3517149 YP_265990.1 CDS SAR11_0566 NC_007205.1 556732 558045 D O-antigen polymerase 556732..558045 Candidatus Pelagibacter ubique HTCC1062 3517150 YP_265991.1 CDS SAR11_0567 NC_007205.1 558028 559029 R hypothetical protein complement(558028..559029) Candidatus Pelagibacter ubique HTCC1062 3517151 YP_265992.2 CDS SAR11_0568 NC_007205.1 559159 560484 D D-amino acid oxidoreductase family protein 559159..560484 Candidatus Pelagibacter ubique HTCC1062 3517115 YP_265993.1 CDS galE NC_007205.1 560488 561444 D UDP-glucose 4-epimerase 560488..561444 Candidatus Pelagibacter ubique HTCC1062 3517116 YP_265994.1 CDS gmd NC_007205.1 561627 562670 D gdpmannose 4,6-dehydratase 561627..562670 Candidatus Pelagibacter ubique HTCC1062 3517117 YP_265995.1 CDS wcaG NC_007205.1 562663 563601 D substrain RIMD 0509952; GDP-fucose synthetase chain A 562663..563601 Candidatus Pelagibacter ubique HTCC1062 3517118 YP_265996.1 CDS rfaD NC_007205.1 563601 564479 D ADP-L-glycero-D-manno-heptose-6-epimerase 563601..564479 Candidatus Pelagibacter ubique HTCC1062 3517119 YP_265997.1 CDS rpmJ NC_007205.1 564660 564785 D 50S ribosomal protein L36 564660..564785 Candidatus Pelagibacter ubique HTCC1062 3517121 YP_265998.1 CDS pntA NC_007205.1 564911 565999 D C-terminal; alanine dehydrogenase 564911..565999 Candidatus Pelagibacter ubique HTCC1062 3517122 YP_265999.1 CDS pntAB NC_007205.1 566004 566312 D NAD(P) transhydrogenase subunit alpha 566004..566312 Candidatus Pelagibacter ubique HTCC1062 3517123 YP_266000.1 CDS pntB NC_007205.1 566315 567709 D NAD(P) transhydrogenase subunit beta 566315..567709 Candidatus Pelagibacter ubique HTCC1062 3517124 YP_266001.1 CDS tal NC_007205.1 567715 568413 D similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 567715..568413 Candidatus Pelagibacter ubique HTCC1062 3517125 YP_266002.1 CDS rpsU NC_007205.1 568515 568709 R 30S ribosomal protein S21 complement(568515..568709) Candidatus Pelagibacter ubique HTCC1062 3517127 YP_266003.2 CDS SAR11_0579 NC_007205.1 568765 569352 R similar to protein of unknown function (DUF1013); hypothetical protein complement(568765..569352) Candidatus Pelagibacter ubique HTCC1062 3517128 YP_266004.1 CDS rpmE NC_007205.1 569353 569583 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(569353..569583) Candidatus Pelagibacter ubique HTCC1062 3517129 YP_266005.1 CDS suhB NC_007205.1 569619 570359 R extragenic suppressor protein suhB complement(569619..570359) Candidatus Pelagibacter ubique HTCC1062 3517130 YP_266006.1 CDS efp NC_007205.1 570365 570925 R elongation factor P (EF-P) complement(570365..570925) Candidatus Pelagibacter ubique HTCC1062 3517131 YP_266007.1 CDS thiE NC_007205.1 570922 571545 R thiamine-phosphate pyrophosphorylase complement(570922..571545) Candidatus Pelagibacter ubique HTCC1062 3517132 YP_266008.1 CDS fbaB NC_007205.1 571532 572542 R similar to non-muscle-type fructose-bisphosphate aldolase from Pacific lamprey; fructose-bisphosphate aldolase complement(571532..572542) Candidatus Pelagibacter ubique HTCC1062 3517096 YP_266009.1 CDS pgk NC_007205.1 572544 573722 R phosphoglycerate kinase complement(572544..573722) Candidatus Pelagibacter ubique HTCC1062 3517097 YP_266010.1 CDS gap NC_007205.1 573722 574729 R glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) complement(573722..574729) Candidatus Pelagibacter ubique HTCC1062 3517098 YP_266011.1 CDS tktB NC_007205.1 574732 576690 R thiamine diphosphate binding domain; transketolase complement(574732..576690) Candidatus Pelagibacter ubique HTCC1062 3517099 YP_266012.1 CDS yqgN NC_007205.1 576744 577067 D 5-formyltetrahydrofolate cyclo-ligase 576744..577067 Candidatus Pelagibacter ubique HTCC1062 3517100 YP_266013.1 CDS SAR11_0589 NC_007205.1 577055 577501 D similar to family of unknown function (DUF710); hypothetical protein 577055..577501 Candidatus Pelagibacter ubique HTCC1062 3517101 YP_266014.1 CDS SAR11_0590 NC_007205.1 577506 578054 D 5-formyltetrahydrofolate cyclo-ligase 577506..578054 Candidatus Pelagibacter ubique HTCC1062 3517102 YP_266015.1 CDS SAR11_0591 NC_007205.1 578051 578857 D hypothetical protein 578051..578857 Candidatus Pelagibacter ubique HTCC1062 3517103 YP_266016.1 CDS SAR11_0592 NC_007205.1 578863 579588 D hypothetical protein 578863..579588 Candidatus Pelagibacter ubique HTCC1062 3517104 YP_266017.1 CDS ruvC NC_007205.1 579588 580082 D crossover junction endodeoxyribonuclease 579588..580082 Candidatus Pelagibacter ubique HTCC1062 3517105 YP_266018.1 CDS tolQ NC_007205.1 580136 580810 D substrain RIMD 0509952; inner membrane protein TolQ 580136..580810 Candidatus Pelagibacter ubique HTCC1062 3517106 YP_266019.1 CDS tolR NC_007205.1 580812 581228 D tolR protein 580812..581228 Candidatus Pelagibacter ubique HTCC1062 3517107 YP_266020.1 CDS tolA NC_007205.1 581234 582043 D TolA protein 581234..582043 Candidatus Pelagibacter ubique HTCC1062 3517108 YP_266021.1 CDS tolB NC_007205.1 582046 583386 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 582046..583386 Candidatus Pelagibacter ubique HTCC1062 3517109 YP_266022.1 CDS ompA NC_007205.1 583474 583953 D OmpA family protein 583474..583953 Candidatus Pelagibacter ubique HTCC1062 3517110 YP_266023.1 CDS SAR11_0599 NC_007205.1 584040 585014 D similar to COG1729: Uncharacterized protein conserved in bacteria; hypothetical protein 584040..585014 Candidatus Pelagibacter ubique HTCC1062 3517111 YP_266024.2 CDS mesJ NC_007205.1 584989 586029 D cell cycle protein mesj 584989..586029 Candidatus Pelagibacter ubique HTCC1062 3517112 YP_266025.1 CDS ftsH NC_007205.1 586081 587967 D metalloprotease FtsH 586081..587967 Candidatus Pelagibacter ubique HTCC1062 3517113 YP_266026.1 CDS folP NC_007205.1 587974 589026 D dihydropteroate synthase-like protein 587974..589026 Candidatus Pelagibacter ubique HTCC1062 3517114 YP_266027.1 CDS mrsA NC_007205.1 589026 590357 D phosphoglucomutase/phosphomannomutase family protein MrsA 589026..590357 Candidatus Pelagibacter ubique HTCC1062 3517077 YP_266028.1 CDS thiD NC_007205.1 590359 591171 D phosphomethylpyrimidine kinase 590359..591171 Candidatus Pelagibacter ubique HTCC1062 3517078 YP_266029.1 CDS adsS NC_007205.1 591171 592463 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 591171..592463 Candidatus Pelagibacter ubique HTCC1062 3517079 YP_266030.1 CDS rpoH NC_007205.1 592460 593341 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(592460..593341) Candidatus Pelagibacter ubique HTCC1062 3517080 YP_266031.1 CDS sfhB NC_007205.1 593396 594376 R pseudouridylate synthase complement(593396..594376) Candidatus Pelagibacter ubique HTCC1062 3517081 YP_266032.1 CDS SAR11_0608 NC_007205.1 594493 595425 R Sua5/YciO/YrdC family protein complement(594493..595425) Candidatus Pelagibacter ubique HTCC1062 3517083 YP_266033.1 CDS SAR11_0609 NC_007205.1 595446 595691 D exonuclease VII small subunit 595446..595691 Candidatus Pelagibacter ubique HTCC1062 3517084 YP_266034.2 CDS ispA NC_007205.1 595681 596553 D substrain RIMD 0509952; geranyltranstransferase 595681..596553 Candidatus Pelagibacter ubique HTCC1062 3517085 YP_266035.1 CDS dxs NC_007205.1 596553 598466 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 596553..598466 Candidatus Pelagibacter ubique HTCC1062 3517086 YP_266036.1 CDS aroC NC_007205.1 598475 599557 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(598475..599557) Candidatus Pelagibacter ubique HTCC1062 3517087 YP_266037.1 CDS pdxH NC_007205.1 599591 600217 D pyridoxamine-phosphate oxidase 599591..600217 Candidatus Pelagibacter ubique HTCC1062 3517088 YP_266038.1 CDS ispB NC_007205.1 600214 601227 R octaprenyl-diphosphate synthase complement(600214..601227) Candidatus Pelagibacter ubique HTCC1062 3517089 YP_266039.1 CDS sohB NC_007205.1 601340 602146 D S49 family peptidase 601340..602146 Candidatus Pelagibacter ubique HTCC1062 3517090 YP_266040.1 CDS glyQ NC_007205.1 602136 603020 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 602136..603020 Candidatus Pelagibacter ubique HTCC1062 3517091 YP_266041.1 CDS glyS NC_007205.1 603020 605089 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 603020..605089 Candidatus Pelagibacter ubique HTCC1062 3517092 YP_266042.1 CDS ppdk NC_007205.1 605086 607749 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 605086..607749 Candidatus Pelagibacter ubique HTCC1062 3517093 YP_266043.1 CDS nadC NC_007205.1 607746 608579 R quinolinate phosphoribosyl transferase complement(607746..608579) Candidatus Pelagibacter ubique HTCC1062 3517094 YP_266044.1 CDS nadA NC_007205.1 608585 609574 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(608585..609574) Candidatus Pelagibacter ubique HTCC1062 3517095 YP_266045.1 CDS SAR11_0621 NC_007205.1 609626 610513 R GcvT-like aminomethyltransferase protein complement(609626..610513) Candidatus Pelagibacter ubique HTCC1062 3517058 YP_266046.1 CDS pyrC2 NC_007205.1 610557 611861 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 610557..611861 Candidatus Pelagibacter ubique HTCC1062 3517059 YP_266047.1 CDS qacE NC_007205.1 611858 612190 R small multidrug resistance protein complement(611858..612190) Candidatus Pelagibacter ubique HTCC1062 3517060 YP_266048.1 CDS prpE NC_007205.1 612190 614085 R similar to COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; hypothetical protein complement(612190..614085) Candidatus Pelagibacter ubique HTCC1062 3517061 YP_266049.1 CDS SAR11_0625 NC_007205.1 614302 615069 D bacteriorhodopsin 614302..615069 Candidatus Pelagibacter ubique HTCC1062 3517062 YP_266050.1 CDS fdxB NC_007205.1 615153 615473 D similar to 2Fe-2S Caulobacter crescentus CB15; ferredoxin 615153..615473 Candidatus Pelagibacter ubique HTCC1062 3517063 YP_266051.1 CDS trxB2 NC_007205.1 615474 616490 D thioredoxin-disulfide reductase 615474..616490 Candidatus Pelagibacter ubique HTCC1062 3517064 YP_266052.1 CDS yfcG NC_007205.1 616487 617113 D glutathione S-transferase 616487..617113 Candidatus Pelagibacter ubique HTCC1062 3517065 YP_266053.1 CDS SAR11_0629 NC_007205.1 617122 617895 D MOSC domain-containing protein 617122..617895 Candidatus Pelagibacter ubique HTCC1062 3517066 YP_266054.2 CDS dksA NC_007205.1 617929 618471 R DnaK suppressor protein complement(617929..618471) Candidatus Pelagibacter ubique HTCC1062 3517067 YP_266056.1 CDS SAR11_0632 NC_007205.1 618580 619872 D hypothetical protein 618580..619872 Candidatus Pelagibacter ubique HTCC1062 3517069 YP_266057.1 CDS SAR11_0633 NC_007205.1 619869 620741 D glycosyl transferase family protein 619869..620741 Candidatus Pelagibacter ubique HTCC1062 3517070 YP_266058.1 CDS umuC NC_007205.1 620734 622014 R hypothetical protein complement(620734..622014) Candidatus Pelagibacter ubique HTCC1062 3517071 YP_266059.1 CDS mucA NC_007205.1 621992 622387 R similar to COG1974: SOS-response transcriptional repressors (RecA-mediated autopeptidases); hypothetical protein complement(621992..622387) Candidatus Pelagibacter ubique HTCC1062 3517072 YP_266060.1 CDS SAR11_0636 NC_007205.1 622553 623122 D hypothetical protein 622553..623122 Candidatus Pelagibacter ubique HTCC1062 3517073 YP_266061.1 CDS SAR11_0637 NC_007205.1 623123 623485 D similar to protein of unknown function DUF636; hypothetical protein 623123..623485 Candidatus Pelagibacter ubique HTCC1062 3517074 YP_266062.1 CDS SAR11_0638 NC_007205.1 623595 624419 D phosphoribulokinase/uridine kinase family protein 623595..624419 Candidatus Pelagibacter ubique HTCC1062 3517075 YP_266063.1 CDS tolC NC_007205.1 624419 625717 D outer membrane protein TolC 624419..625717 Candidatus Pelagibacter ubique HTCC1062 3517076 YP_266064.2 CDS recA NC_007205.1 625822 626973 D recA protein 625822..626973 Candidatus Pelagibacter ubique HTCC1062 3516867 YP_266065.1 CDS SAR11_0642 NC_007205.1 627169 628284 R trypsin-like serine and cysteine proteases; serine protease complement(627169..628284) Candidatus Pelagibacter ubique HTCC1062 3516868 YP_266066.1 CDS alaS NC_007205.1 628540 631209 D alanyl-tRNA synthetase 628540..631209 Candidatus Pelagibacter ubique HTCC1062 3516869 YP_266067.1 CDS icdA NC_007205.1 631202 632416 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(631202..632416) Candidatus Pelagibacter ubique HTCC1062 3516870 YP_266068.1 CDS psd2 NC_007205.1 632494 633141 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 632494..633141 Candidatus Pelagibacter ubique HTCC1062 3516871 YP_266069.1 CDS pssA NC_007205.1 633145 633948 D phosphatidylserine synthase 633145..633948 Candidatus Pelagibacter ubique HTCC1062 3516872 YP_266070.1 CDS SAR11_0647 NC_007205.1 633949 634860 D glycosyl transferase family protein 633949..634860 Candidatus Pelagibacter ubique HTCC1062 3516873 YP_266071.1 CDS ftsJ NC_007205.1 634861 635472 D FtsJ-like methyltransferase 634861..635472 Candidatus Pelagibacter ubique HTCC1062 3516874 YP_266072.1 CDS guaB NC_007205.1 635510 636586 D IMP dehydrogenase 635510..636586 Candidatus Pelagibacter ubique HTCC1062 3516875 YP_266073.1 CDS SAR11_0650 NC_007205.1 636586 637023 D hypothetical protein 636586..637023 Candidatus Pelagibacter ubique HTCC1062 3516876 YP_266074.1 CDS guaA NC_007205.1 637013 638578 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 637013..638578 Candidatus Pelagibacter ubique HTCC1062 3516877 YP_266075.1 CDS gloA NC_007205.1 638605 639024 D lactoylglutathione lyase 638605..639024 Candidatus Pelagibacter ubique HTCC1062 3516878 YP_266076.1 CDS panB NC_007205.1 639028 639801 D 3-methyl-2-oxobutanoate hydroxymethyltransferase 639028..639801 Candidatus Pelagibacter ubique HTCC1062 3516879 YP_266077.1 CDS SAR11_0654 NC_007205.1 639803 640417 R hypothetical protein complement(639803..640417) Candidatus Pelagibacter ubique HTCC1062 3516880 YP_266078.1 CDS braC NC_007205.1 640515 641771 R Leu/Ile/Val-binding protein complement(640515..641771) Candidatus Pelagibacter ubique HTCC1062 3516881 YP_266079.1 CDS braD NC_007205.1 641907 642746 D branched chain amino acid ABC transporter 641907..642746 Candidatus Pelagibacter ubique HTCC1062 3516882 YP_266080.1 CDS braE NC_007205.1 642749 643759 D branched chain amino acid ABC transporter 642749..643759 Candidatus Pelagibacter ubique HTCC1062 3516883 YP_266081.1 CDS SAR11_0658 NC_007205.1 643756 644478 D probable high-affinity branched-chain amino acid transport ATP-binding protein; LivG-like protein 643756..644478 Candidatus Pelagibacter ubique HTCC1062 3516884 YP_266082.1 CDS braG NC_007205.1 644468 645175 D high-affinity branched-chain amino acid transport ATP-binding protein 644468..645175 Candidatus Pelagibacter ubique HTCC1062 3516885 YP_266083.1 CDS SAR11_0660 NC_007205.1 645176 645961 R hypothetical protein complement(645176..645961) Candidatus Pelagibacter ubique HTCC1062 3516886 YP_266084.1 CDS SAR11_0661 NC_007205.1 645966 646457 R hypothetical protein complement(645966..646457) Candidatus Pelagibacter ubique HTCC1062 3516907 YP_266085.1 CDS ybgL NC_007205.1 646461 647258 R LamB/YcsF family protein complement(646461..647258) Candidatus Pelagibacter ubique HTCC1062 3516908 YP_266086.1 CDS kipI NC_007205.1 647262 647948 D allophanate hydrolase subunit 1 647262..647948 Candidatus Pelagibacter ubique HTCC1062 3516909 YP_266087.1 CDS ybgK NC_007205.1 647941 648894 D allophanate hydrolase subunit 2 647941..648894 Candidatus Pelagibacter ubique HTCC1062 3516910 YP_266088.1 CDS SAR11_0665 NC_007205.1 648881 649762 D hypothetical protein 648881..649762 Candidatus Pelagibacter ubique HTCC1062 3516911 YP_266089.1 CDS gcvT NC_007205.1 649954 651060 D glycine cleavage system protein T2 649954..651060 Candidatus Pelagibacter ubique HTCC1062 3516912 YP_266090.1 CDS gcvH NC_007205.1 651057 651437 D glycine cleavage H-protein 651057..651437 Candidatus Pelagibacter ubique HTCC1062 3516913 YP_266091.1 CDS gcvP NC_007205.1 651438 654296 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 651438..654296 Candidatus Pelagibacter ubique HTCC1062 3516914 YP_266092.1 CDS SAR11_0669 NC_007205.1 654309 655553 D flavin containing amine oxidoreductas 654309..655553 Candidatus Pelagibacter ubique HTCC1062 3516915 YP_266093.1 CDS SAR11_0670 NC_007205.1 655546 656313 D similar to protein of unknown function (DUF1365); hypothetical protein 655546..656313 Candidatus Pelagibacter ubique HTCC1062 3516916 YP_266094.1 CDS SAR11_0672 NC_007205.1 656313 657491 D cfa-like protein; cyclopropane-fatty-acyl-phospholipid synthase 656313..657491 Candidatus Pelagibacter ubique HTCC1062 3516917 YP_266095.1 CDS SAR11_0673 NC_007205.1 657505 658053 D hypothetical protein 657505..658053 Candidatus Pelagibacter ubique HTCC1062 3516918 YP_266096.1 CDS SAR11_0674 NC_007205.1 658050 658811 R short chain dehydrogenase complement(658050..658811) Candidatus Pelagibacter ubique HTCC1062 3516919 YP_266097.1 CDS tspo NC_007205.1 658833 659300 D TspO/MBR family protein 658833..659300 Candidatus Pelagibacter ubique HTCC1062 3516920 YP_266098.1 CDS SAR11_0676 NC_007205.1 659309 660412 D similar to FAD dependent oxidoreductase family; hypothetical protein 659309..660412 Candidatus Pelagibacter ubique HTCC1062 3516921 YP_266099.1 CDS SAR11_0677 NC_007205.1 660441 660977 D similar to COG4627: Uncharacterized protein conserved in bacteria; hypothetical protein 660441..660977 Candidatus Pelagibacter ubique HTCC1062 3516922 YP_266100.1 CDS SAR11_0678 NC_007205.1 660987 662438 R similar to Bacillus cereus ATCC 14579 sp|Q813A5|YY99_BACCR hypothetical UPF006; hypothetical protein complement(660987..662438) Candidatus Pelagibacter ubique HTCC1062 3516923 YP_266101.1 CDS fdhF NC_007205.1 662447 665215 R formate dehydrogenase subunit alpha (fdhF-2) complement(662447..665215) Candidatus Pelagibacter ubique HTCC1062 3516924 YP_266102.2 CDS fdsB NC_007205.1 665215 666873 R NAD-dependent formate dehydrogenase subunit beta complement(665215..666873) Candidatus Pelagibacter ubique HTCC1062 3516925 YP_266103.1 CDS fdhD NC_007205.1 666877 667719 R formate dehydrogenase subunit D complement(666877..667719) Candidatus Pelagibacter ubique HTCC1062 3517930 YP_266104.1 CDS SAR11_0682 NC_007205.1 667724 668200 R HPP family protein complement(667724..668200) Candidatus Pelagibacter ubique HTCC1062 3517931 YP_266105.1 CDS SAR11_0683 NC_007205.1 668203 668601 R NifU-like domain-containing protein complement(668203..668601) Candidatus Pelagibacter ubique HTCC1062 3517932 YP_266106.1 CDS mobA NC_007205.1 668645 669265 D similar to COG0746: Molybdopterin-guanine dinucleotide biosynthesis protein A; hypothetical protein 668645..669265 Candidatus Pelagibacter ubique HTCC1062 3517933 YP_266107.1 CDS moeA NC_007205.1 669258 670505 D molybdopterin biosynthesis protein moeA 669258..670505 Candidatus Pelagibacter ubique HTCC1062 3517934 YP_266108.1 CDS SAR11_0686 NC_007205.1 670773 671459 D hypothetical protein 670773..671459 Candidatus Pelagibacter ubique HTCC1062 3517935 YP_266109.1 CDS pepQ NC_007205.1 671465 672682 D creatinase 671465..672682 Candidatus Pelagibacter ubique HTCC1062 3517936 YP_266110.1 CDS gatM NC_007205.1 672686 673798 D glycine amidinotransferase 672686..673798 Candidatus Pelagibacter ubique HTCC1062 3517937 YP_266111.1 CDS SAR11_0689 NC_007205.1 673801 674853 D threonine aldolase 673801..674853 Candidatus Pelagibacter ubique HTCC1062 3517938 YP_266112.1 CDS SAR11_0690 NC_007205.1 674846 675040 R hypothetical protein complement(674846..675040) Candidatus Pelagibacter ubique HTCC1062 3517939 YP_266113.1 CDS SAR11_0691 NC_007205.1 675167 676099 R similar to hypothetical protein EBAC750-09G06.38 from uncultured bacterium 314; hypothetical protein complement(675167..676099) Candidatus Pelagibacter ubique HTCC1062 3517940 YP_266114.1 CDS yajQ NC_007205.1 676379 676864 R nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein complement(676379..676864) Candidatus Pelagibacter ubique HTCC1062 3517941 YP_266115.1 CDS slyX NC_007205.1 676886 677161 D SlyX family protein 676886..677161 Candidatus Pelagibacter ubique HTCC1062 3517942 YP_266116.1 CDS SAR11_0694 NC_007205.1 677178 678359 D hypothetical protein 677178..678359 Candidatus Pelagibacter ubique HTCC1062 3517943 YP_266117.1 CDS ycaD NC_007205.1 678384 679706 R similar to mfs superfamily; transporter complement(678384..679706) Candidatus Pelagibacter ubique HTCC1062 3517944 YP_266118.1 CDS salY NC_007205.1 679765 680625 R similar to COG0697: Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein complement(679765..680625) Candidatus Pelagibacter ubique HTCC1062 3517945 YP_266119.1 CDS gshB NC_007205.1 680622 681551 R glutathione synthase complement(680622..681551) Candidatus Pelagibacter ubique HTCC1062 3517946 YP_266120.1 CDS gsh1 NC_007205.1 681541 682836 R glutamate--cysteine ligase complement(681541..682836) Candidatus Pelagibacter ubique HTCC1062 3517947 YP_266121.1 CDS purF NC_007205.1 682918 684399 R amidophosphoribosyltransferase complement(682918..684399) Candidatus Pelagibacter ubique HTCC1062 3517948 YP_266122.1 CDS cvpA NC_007205.1 684353 684898 R colicin V production protein complement(684353..684898) Candidatus Pelagibacter ubique HTCC1062 3517949 YP_266123.1 CDS acrB NC_007205.1 684906 687290 R hypothetical protein complement(684906..687290) Candidatus Pelagibacter ubique HTCC1062 3516829 YP_266124.1 CDS dnaB NC_007205.1 687312 688730 R replicative DNA helicase (dnaB) complement(687312..688730) Candidatus Pelagibacter ubique HTCC1062 3516830 YP_266125.1 CDS csn1 NC_007205.1 688798 689256 R 50S ribosomal protein L9 complement(688798..689256) Candidatus Pelagibacter ubique HTCC1062 3516831 YP_266126.1 CDS rpsR NC_007205.1 689257 689535 R 30S ribosomal protein S18 complement(689257..689535) Candidatus Pelagibacter ubique HTCC1062 3516832 YP_266127.1 CDS rpsF NC_007205.1 689538 689903 R 30S ribosomal protein S6 complement(689538..689903) Candidatus Pelagibacter ubique HTCC1062 3516833 YP_266128.1 CDS fabD NC_007205.1 689990 690922 D ACP S-malonyltransferase 689990..690922 Candidatus Pelagibacter ubique HTCC1062 3516834 YP_266129.1 CDS fabG NC_007205.1 690915 691652 D 3-oxoacyl-ACP reductase 690915..691652 Candidatus Pelagibacter ubique HTCC1062 3516835 YP_266130.1 CDS acpP NC_007205.1 691701 691940 D acyl carrier protein 691701..691940 Candidatus Pelagibacter ubique HTCC1062 3516836 YP_266131.1 CDS gmk NC_007205.1 691948 692580 D guanylate kinase 691948..692580 Candidatus Pelagibacter ubique HTCC1062 3516837 YP_266132.1 CDS ksgA NC_007205.1 692569 693357 R dimethyladenosine transferase complement(692569..693357) Candidatus Pelagibacter ubique HTCC1062 3516838 YP_266133.1 CDS pdxA NC_007205.1 693358 694320 R 4-hydroxythreonine-4-phosphate dehydrogenase complement(693358..694320) Candidatus Pelagibacter ubique HTCC1062 3516839 YP_266134.1 CDS SAR11_0712 NC_007205.1 694313 695230 R SurA-like protein complement(694313..695230) Candidatus Pelagibacter ubique HTCC1062 3516840 YP_266135.1 CDS ostA NC_007205.1 695237 697681 R organic solvent tolerance-like protein complement(695237..697681) Candidatus Pelagibacter ubique HTCC1062 3516841 YP_266136.1 CDS SAR11_0714 NC_007205.1 697671 698744 R YjgP/YjgQ family permease complement(697671..698744) Candidatus Pelagibacter ubique HTCC1062 3516842 YP_266137.1 CDS SAR11_0715 NC_007205.1 698741 699877 R YjgP/YjgQ family permease complement(698741..699877) Candidatus Pelagibacter ubique HTCC1062 3516843 YP_266138.1 CDS pepA NC_007205.1 699939 701396 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 699939..701396 Candidatus Pelagibacter ubique HTCC1062 3516844 YP_266139.1 CDS ndk NC_007205.1 701389 701799 D nucleoside diphosphate kinase 701389..701799 Candidatus Pelagibacter ubique HTCC1062 3516845 YP_266140.1 CDS purN NC_007205.1 701796 702374 R phosphoribosylglycinamide formyltransferase complement(701796..702374) Candidatus Pelagibacter ubique HTCC1062 3516846 YP_266141.1 CDS purM NC_007205.1 702352 703380 R phosphoribosylformylglycinamidine cyclo-ligase complement(702352..703380) Candidatus Pelagibacter ubique HTCC1062 3516847 YP_266142.2 CDS SAR11_0720 NC_007205.1 703392 704471 D hypothetical protein 703392..704471 Candidatus Pelagibacter ubique HTCC1062 3517910 YP_266143.1 CDS SAR11_0721 NC_007205.1 704468 705130 D DNA replication initiation ATPase 704468..705130 Candidatus Pelagibacter ubique HTCC1062 3517911 YP_266144.1 CDS aspS NC_007205.1 705131 706915 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 705131..706915 Candidatus Pelagibacter ubique HTCC1062 3517912 YP_266145.1 CDS nrdE NC_007205.1 706918 707739 R possibly vitamin B12-dependent; ribonucleotide reductase subunit alpha complement(706918..707739) Candidatus Pelagibacter ubique HTCC1062 3517913 YP_266146.1 CDS SAR11_0724 NC_007205.1 707855 708214 D NADH-ubiquinone oxidoreductase 17.2 kD subunit of complex I 707855..708214 Candidatus Pelagibacter ubique HTCC1062 3517914 YP_266147.1 CDS SAR11_0725 NC_007205.1 708174 708581 D similar to Caulobacter crescentus CB15 gi|25397377|pir||A87483 hypothetical protein CC1; hypothetical protein 708174..708581 Candidatus Pelagibacter ubique HTCC1062 3517915 YP_266148.1 CDS SAR11_0726 NC_007205.1 708578 709915 R biotin carboxylase complement(708578..709915) Candidatus Pelagibacter ubique HTCC1062 3517916 YP_266149.1 CDS accB NC_007205.1 709915 710340 R AccB; acetyl-CoA carboxylase biotin carboxyl carrier protein complement(709915..710340) Candidatus Pelagibacter ubique HTCC1062 3517917 YP_266150.1 CDS aroQ NC_007205.1 710327 710776 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(710327..710776) Candidatus Pelagibacter ubique HTCC1062 3517918 YP_266151.1 CDS SAR11_0729 NC_007205.1 710793 711011 D thiamine biosynthesis protein ThiS 710793..711011 Candidatus Pelagibacter ubique HTCC1062 3517919 YP_266152.1 CDS thiG NC_007205.1 711014 711787 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 711014..711787 Candidatus Pelagibacter ubique HTCC1062 3517920 YP_266153.1 CDS rne NC_007205.1 711784 713643 R rne/rng; ribonuclease E/G complement(711784..713643) Candidatus Pelagibacter ubique HTCC1062 3517921 YP_266154.1 CDS mrcA NC_007205.1 713746 716079 D penicillin-binding protein 1A 713746..716079 Candidatus Pelagibacter ubique HTCC1062 3517922 YP_266155.1 CDS prfB NC_007205.1 716320 717174 D peptide chain release factor 2 716320..717174 Candidatus Pelagibacter ubique HTCC1062 3517923 YP_266156.1 CDS SAR11_0734 NC_007205.1 717174 719366 D hypothetical protein 717174..719366 Candidatus Pelagibacter ubique HTCC1062 3517924 YP_266157.1 CDS tyrS NC_007205.1 719363 720592 R tyrosyl-tRNA synthetase complement(719363..720592) Candidatus Pelagibacter ubique HTCC1062 3517925 YP_266158.1 CDS anmK NC_007205.1 720637 721764 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 720637..721764 Candidatus Pelagibacter ubique HTCC1062 3517926 YP_266159.1 CDS SAR11_0737 NC_007205.1 721767 722423 R alpha/beta hydrolase complement(721767..722423) Candidatus Pelagibacter ubique HTCC1062 3517927 YP_266160.1 CDS sufA NC_007205.1 722560 722985 D transcriptional regulator 722560..722985 Candidatus Pelagibacter ubique HTCC1062 3517928 YP_266161.1 CDS sufB NC_007205.1 722987 724429 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase 722987..724429 Candidatus Pelagibacter ubique HTCC1062 3517929 YP_266162.1 CDS sufC NC_007205.1 724429 725163 D FeS assembly ATPase SufC 724429..725163 Candidatus Pelagibacter ubique HTCC1062 3516810 YP_266163.1 CDS sufD NC_007205.1 725164 726408 D FeS assembly protein sufD 725164..726408 Candidatus Pelagibacter ubique HTCC1062 3516811 YP_266164.1 CDS csdB NC_007205.1 726405 727622 D similar to Escherichia coli csdB, nifs Family; selenocysteine lyase chain A 726405..727622 Candidatus Pelagibacter ubique HTCC1062 3516812 YP_266165.1 CDS sufE NC_007205.1 727622 728092 D involved in Fe-S cluster formation; nifU-like protein 727622..728092 Candidatus Pelagibacter ubique HTCC1062 3516813 YP_266166.1 CDS paaD NC_007205.1 728096 728392 D phenylacetic acid degradation protein 728096..728392 Candidatus Pelagibacter ubique HTCC1062 3516814 YP_266167.1 CDS hesB NC_007205.1 728392 728724 D hesB protein 728392..728724 Candidatus Pelagibacter ubique HTCC1062 3516815 YP_266168.1 CDS SAR11_0746 NC_007205.1 728783 728953 D hypothetical protein 728783..728953 Candidatus Pelagibacter ubique HTCC1062 3516816 YP_266169.1 CDS glnA NC_007205.1 728960 730366 R glutamine synthetase complement(728960..730366) Candidatus Pelagibacter ubique HTCC1062 3516817 YP_266170.1 CDS SAR11_0748 NC_007205.1 730513 730992 D prolyl-tRNA synthetase 730513..730992 Candidatus Pelagibacter ubique HTCC1062 3516818 YP_266171.1 CDS SAR11_0749 NC_007205.1 730989 731876 D membrane spanning protein; ABC transporter 730989..731876 Candidatus Pelagibacter ubique HTCC1062 3516819 YP_266172.1 CDS mmuM NC_007205.1 731869 732777 R homocysteine S-methyltransferase complement(731869..732777) Candidatus Pelagibacter ubique HTCC1062 3516820 YP_266173.1 CDS SAR11_0751 NC_007205.1 732939 733529 R hypothetical protein complement(732939..733529) Candidatus Pelagibacter ubique HTCC1062 3516821 YP_266174.1 CDS SAR11_0752 NC_007205.1 733559 734305 R transmembrane protein complement(733559..734305) Candidatus Pelagibacter ubique HTCC1062 3516822 YP_266175.1 CDS moaB NC_007205.1 734324 734824 D molybdopterin biosynthesis protein 734324..734824 Candidatus Pelagibacter ubique HTCC1062 3516823 YP_266176.1 CDS SAR11_0755 NC_007205.1 734825 735070 R similar to COG3492: Uncharacterized protein conserved in bacteria; hypothetical protein complement(734825..735070) Candidatus Pelagibacter ubique HTCC1062 3516824 YP_266177.1 CDS aldA NC_007205.1 735368 736918 D acetaldehyde dehydrogenase II 735368..736918 Candidatus Pelagibacter ubique HTCC1062 3516825 YP_266178.1 CDS SAR11_0757 NC_007205.1 736964 737311 D hypothetical protein 736964..737311 Candidatus Pelagibacter ubique HTCC1062 3516826 YP_266179.1 CDS yedZ NC_007205.1 737308 737877 R hypothetical protein complement(737308..737877) Candidatus Pelagibacter ubique HTCC1062 3516827 YP_266180.1 CDS yedY NC_007205.1 737902 738807 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY complement(737902..738807) Candidatus Pelagibacter ubique HTCC1062 3516828 YP_266181.1 CDS moaE NC_007205.1 738804 739247 R molybdopterin biosynthesis protein subunit E complement(738804..739247) Candidatus Pelagibacter ubique HTCC1062 3517402 YP_266182.1 CDS moaD NC_007205.1 739247 739516 R molybdopterin biosynthesis protein moaD complement(739247..739516) Candidatus Pelagibacter ubique HTCC1062 3517403 YP_266183.1 CDS moaC NC_007205.1 739519 740064 R molybdopterin cofactor synthesis protein complement(739519..740064) Candidatus Pelagibacter ubique HTCC1062 3517404 YP_266184.1 CDS moaA NC_007205.1 740065 741057 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(740065..741057) Candidatus Pelagibacter ubique HTCC1062 3517405 YP_266185.1 CDS SAR11_0764 NC_007205.1 741093 741926 D deoxygenase 741093..741926 Candidatus Pelagibacter ubique HTCC1062 3517406 YP_266186.1 CDS SAR11_0765 NC_007205.1 741963 742289 R hypothetical protein complement(741963..742289) Candidatus Pelagibacter ubique HTCC1062 3517407 YP_266187.1 CDS gabD NC_007205.1 742383 743825 D succinate-semialdehyde dehydrogenase (NAD(P)) 742383..743825 Candidatus Pelagibacter ubique HTCC1062 3517408 YP_266188.1 CDS SAR11_0767 NC_007205.1 743871 744617 D unknown specificity; short chain dehydrogenase 743871..744617 Candidatus Pelagibacter ubique HTCC1062 3517409 YP_266189.1 CDS yajF NC_007205.1 744621 745523 D NAGC-like transcription regulator 744621..745523 Candidatus Pelagibacter ubique HTCC1062 3517410 YP_266190.1 CDS SAR11_0769 NC_007205.1 745724 746983 D sugar ABC transporter substrate-binding protein 745724..746983 Candidatus Pelagibacter ubique HTCC1062 3517411 YP_266191.1 CDS SAR11_0770 NC_007205.1 747047 747919 D permease component; ABC-type sugar transport system 747047..747919 Candidatus Pelagibacter ubique HTCC1062 3517412 YP_266192.1 CDS SAR11_0771 NC_007205.1 747909 748811 D permease component; ABC-type sugar transport system 747909..748811 Candidatus Pelagibacter ubique HTCC1062 3517413 YP_266193.1 CDS malK NC_007205.1 748813 749913 D ATP-binding protein; sugar ABC transporter 748813..749913 Candidatus Pelagibacter ubique HTCC1062 3517414 YP_266194.1 CDS SAR11_0773 NC_007205.1 749914 750675 D unknown specificity; short chain dehydrogenase 749914..750675 Candidatus Pelagibacter ubique HTCC1062 3517415 YP_266195.1 CDS edd NC_007205.1 750690 752465 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 750690..752465 Candidatus Pelagibacter ubique HTCC1062 3517416 YP_266196.1 CDS ucpA NC_007205.1 752477 753220 D oxidoreductase 752477..753220 Candidatus Pelagibacter ubique HTCC1062 3517417 YP_266197.1 CDS hpcE NC_007205.1 753242 754084 D 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 753242..754084 Candidatus Pelagibacter ubique HTCC1062 3517418 YP_266198.1 CDS gnl NC_007205.1 754086 754967 D gluconolactonase 754086..754967 Candidatus Pelagibacter ubique HTCC1062 3517419 YP_266199.1 CDS gnd NC_007205.1 755023 755892 D 6-phosphogluconate dehydrogenase 755023..755892 Candidatus Pelagibacter ubique HTCC1062 3517420 YP_266200.1 CDS hpaG NC_007205.1 755889 756734 D fumarylacetoacetate hydrolase family protein 755889..756734 Candidatus Pelagibacter ubique HTCC1062 3517421 YP_266201.1 CDS ppc NC_007205.1 756745 759432 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 756745..759432 Candidatus Pelagibacter ubique HTCC1062 3516771 YP_266202.1 CDS ccdA NC_007205.1 759434 760141 D holocytochrome-c synthase ccdA 759434..760141 Candidatus Pelagibacter ubique HTCC1062 3516772 YP_266203.1 CDS azoR NC_007205.1 760165 760746 D renamed azoR; ACP phosphodiesterase 760165..760746 Candidatus Pelagibacter ubique HTCC1062 3516773 YP_266204.1 CDS SAR11_0783 NC_007205.1 760746 761552 D inositol monophosphatase family; inositol monophosphatase 760746..761552 Candidatus Pelagibacter ubique HTCC1062 3516774 YP_266205.1 CDS SAR11_0784 NC_007205.1 761553 762113 D hypothetical protein 761553..762113 Candidatus Pelagibacter ubique HTCC1062 3516775 YP_266206.1 CDS SAR11_0785 NC_007205.1 762333 762677 D hypothetical protein 762333..762677 Candidatus Pelagibacter ubique HTCC1062 3516776 YP_266207.1 CDS qacH NC_007205.1 763013 763345 R quaternary ammonium compounds; multidrug resistance protein complement(763013..763345) Candidatus Pelagibacter ubique HTCC1062 3516777 YP_266208.1 CDS qacH2 NC_007205.1 763345 763680 R quaternary ammonium compound-resistance protein qacH complement(763345..763680) Candidatus Pelagibacter ubique HTCC1062 3516778 YP_266209.1 CDS SAR11_0788 NC_007205.1 763730 763939 R transmembrane protein complement(763730..763939) Candidatus Pelagibacter ubique HTCC1062 3516779 YP_266210.1 CDS cysK NC_007205.1 763955 764959 R CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A complement(763955..764959) Candidatus Pelagibacter ubique HTCC1062 3516780 YP_266211.1 CDS cysE NC_007205.1 764959 765537 R serine O-acetyltransferase complement(764959..765537) Candidatus Pelagibacter ubique HTCC1062 3516781 YP_266212.1 CDS SAR11_0791 NC_007205.1 765612 766022 D ring-cleaving dioxygenase 765612..766022 Candidatus Pelagibacter ubique HTCC1062 3516782 YP_266213.1 CDS SAR11_0792 NC_007205.1 766031 766501 D hypothetical protein 766031..766501 Candidatus Pelagibacter ubique HTCC1062 3516783 YP_266214.1 CDS SAR11_0793 NC_007205.1 766600 767475 D hypothetical protein 766600..767475 Candidatus Pelagibacter ubique HTCC1062 3516784 YP_266215.2 CDS SAR11_0794 NC_007205.1 767480 768199 D hypothetical protein 767480..768199 Candidatus Pelagibacter ubique HTCC1062 3516785 YP_266216.1 CDS SAR11_0795 NC_007205.1 768206 769159 D hypothetical protein 768206..769159 Candidatus Pelagibacter ubique HTCC1062 3516786 YP_266217.1 CDS aldH NC_007205.1 769202 770683 D aldehyde dehydrogenase 769202..770683 Candidatus Pelagibacter ubique HTCC1062 3516787 YP_266218.1 CDS proX NC_007205.1 770785 771747 D periplasmic components; similar to COG2113: ABC-type proline/glycine betaine transport systems; hypothetical protein 770785..771747 Candidatus Pelagibacter ubique HTCC1062 3516788 YP_266219.1 CDS proV NC_007205.1 771830 772879 D glycine betaine/L-proline transport ATP-binding protein 771830..772879 Candidatus Pelagibacter ubique HTCC1062 3516789 YP_266220.1 CDS proW NC_007205.1 772872 774377 D glycine betaine/L-proline transport system permease protein 772872..774377 Candidatus Pelagibacter ubique HTCC1062 3516713 YP_266221.1 CDS yggA NC_007205.1 774387 774992 D lysine efflux pump 774387..774992 Candidatus Pelagibacter ubique HTCC1062 3516714 YP_266222.1 CDS hisD NC_007205.1 774994 776280 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(774994..776280) Candidatus Pelagibacter ubique HTCC1062 3516715 YP_266223.1 CDS pta NC_007205.1 776343 777149 R phosphate acetyltransferase (phosphotransacetylase) complement(776343..777149) Candidatus Pelagibacter ubique HTCC1062 3516716 YP_266224.1 CDS ephX1 NC_007205.1 777304 778446 D epoxide hydrolase 777304..778446 Candidatus Pelagibacter ubique HTCC1062 3516717 YP_266225.1 CDS comC NC_007205.1 778447 779457 R malate/L-sulfolactate dehydrogenase multifunction enzyme complement(778447..779457) Candidatus Pelagibacter ubique HTCC1062 3516718 YP_266226.1 CDS tauC NC_007205.1 779476 781389 R taurine uptake ABC transporter permease protein complement(779476..781389) Candidatus Pelagibacter ubique HTCC1062 3516719 YP_266227.1 CDS tauB NC_007205.1 781391 782188 R taurin uptake ABC transporter ATP-binding protein complement(781391..782188) Candidatus Pelagibacter ubique HTCC1062 3516720 YP_266228.1 CDS tauA NC_007205.1 782276 783217 R taurine transport system periplasmic protein complement(782276..783217) Candidatus Pelagibacter ubique HTCC1062 3516721 YP_266229.1 CDS bioA NC_007205.1 783435 784781 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 783435..784781 Candidatus Pelagibacter ubique HTCC1062 3516722 YP_266230.1 CDS ald NC_007205.1 784825 785937 D alanine dehydrogenase 784825..785937 Candidatus Pelagibacter ubique HTCC1062 3516723 YP_266231.1 CDS SAR11_0810 NC_007205.1 785951 786466 D hypothetical protein 785951..786466 Candidatus Pelagibacter ubique HTCC1062 3516724 YP_266232.1 CDS SAR11_0811 NC_007205.1 786575 788023 D possible urea transporter (Pfam); sodium/solute transporter family 786575..788023 Candidatus Pelagibacter ubique HTCC1062 3516725 YP_266233.1 CDS yadG NC_007205.1 788073 789008 D ABC transporter ATP-binding protein 788073..789008 Candidatus Pelagibacter ubique HTCC1062 3516726 YP_266234.1 CDS yadH NC_007205.1 788998 789765 D ABC-2-type transport system; permease 788998..789765 Candidatus Pelagibacter ubique HTCC1062 3516727 YP_266235.1 CDS cynT NC_007205.1 789794 790177 R similar to prokaryotic and plant carbonic anhydrase; carbonic anhydrase complement(789794..790177) Candidatus Pelagibacter ubique HTCC1062 3516728 YP_266236.1 CDS SAR11_0816 NC_007205.1 790317 791450 D zinc metalloprotease 790317..791450 Candidatus Pelagibacter ubique HTCC1062 3516729 YP_266237.1 CDS hupA NC_007205.1 791591 791866 D similar to Escherichia coli hupA and hupB; non-specific DNA-binding protein HBsu 791591..791866 Candidatus Pelagibacter ubique HTCC1062 3516730 YP_266238.1 CDS amtB NC_007205.1 792013 793314 D ammonium transporter 792013..793314 Candidatus Pelagibacter ubique HTCC1062 3516731 YP_266239.1 CDS bcp NC_007205.1 793367 793834 R bacterioferritin comigratory protein complement(793367..793834) Candidatus Pelagibacter ubique HTCC1062 3516732 YP_266240.1 CDS wbbA NC_007205.1 793837 794856 R rhamnosyltransferase complement(793837..794856) Candidatus Pelagibacter ubique HTCC1062 3516694 YP_266241.1 CDS SAR11_0821 NC_007205.1 794910 795293 D sulfide dehydrogenase 794910..795293 Candidatus Pelagibacter ubique HTCC1062 3516695 YP_266242.1 CDS dsbA NC_007205.1 795290 795874 R 2-hydroxychromene-2-carboxylate isomerase complement(795290..795874) Candidatus Pelagibacter ubique HTCC1062 3516696 YP_266243.1 CDS SAR11_0823 NC_007205.1 795867 796340 R hypothetical protein complement(795867..796340) Candidatus Pelagibacter ubique HTCC1062 3516697 YP_266244.1 CDS recX NC_007205.1 796378 796932 D regulatory protein 796378..796932 Candidatus Pelagibacter ubique HTCC1062 3516698 YP_266245.1 CDS SAR11_0825 NC_007205.1 796924 797070 R transmembrane protein complement(796924..797070) Candidatus Pelagibacter ubique HTCC1062 3516699 YP_266246.1 CDS cysQ NC_007205.1 797070 797840 R cysQ protein complement(797070..797840) Candidatus Pelagibacter ubique HTCC1062 3516700 YP_266247.1 CDS SAR11_0827 NC_007205.1 797837 798043 R hypothetical protein complement(797837..798043) Candidatus Pelagibacter ubique HTCC1062 3516701 YP_266248.1 CDS trmU NC_007205.1 798049 799164 D tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 798049..799164 Candidatus Pelagibacter ubique HTCC1062 3516702 YP_266249.2 CDS metC NC_007205.1 799350 800525 D cystathionine beta-lyase 799350..800525 Candidatus Pelagibacter ubique HTCC1062 3516703 YP_266250.1 CDS SAR11_0830 NC_007205.1 800522 801742 D major facilitator transporter 800522..801742 Candidatus Pelagibacter ubique HTCC1062 3516704 YP_266251.1 CDS pabB NC_007205.1 801746 802909 D para-aminobenzoate synthase component I 801746..802909 Candidatus Pelagibacter ubique HTCC1062 3516705 YP_266252.1 CDS trpG NC_007205.1 802906 803463 D anthranilate synthase component II (glutamine amido-transferase) 802906..803463 Candidatus Pelagibacter ubique HTCC1062 3516706 YP_266253.1 CDS SAR11_0833 NC_007205.1 803522 804196 D class IV; aminotransferase 803522..804196 Candidatus Pelagibacter ubique HTCC1062 3516707 YP_266254.1 CDS apaG NC_007205.1 804165 804599 D diadenosine tetraphosphate hydrolase 804165..804599 Candidatus Pelagibacter ubique HTCC1062 3516708 YP_266255.1 CDS aprM NC_007205.1 804704 805498 D adenylylsulfate reductase membrane anchor 804704..805498 Candidatus Pelagibacter ubique HTCC1062 3516709 YP_266256.1 CDS aprB NC_007205.1 805519 805989 D adenylyl-sulfate reductase chain B 805519..805989 Candidatus Pelagibacter ubique HTCC1062 3516710 YP_266257.1 CDS aprA NC_007205.1 805989 807848 D catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha 805989..807848 Candidatus Pelagibacter ubique HTCC1062 3516711 YP_266258.1 CDS SAR11_0838 NC_007205.1 807867 808217 D hypothetical protein 807867..808217 Candidatus Pelagibacter ubique HTCC1062 3516712 YP_266259.1 CDS SAR11_0839 NC_007205.1 808285 808419 D transmembrane protein 808285..808419 Candidatus Pelagibacter ubique HTCC1062 3516674 YP_266260.1 CDS SAR11_0840 NC_007205.1 808448 809530 D transmembrane permease 808448..809530 Candidatus Pelagibacter ubique HTCC1062 3516675 YP_266261.1 CDS yeiH NC_007205.1 809527 810600 R hypothetical protein complement(809527..810600) Candidatus Pelagibacter ubique HTCC1062 3516676 YP_266262.1 CDS garD NC_007205.1 810619 811785 R galactarate dehydratase complement(810619..811785) Candidatus Pelagibacter ubique HTCC1062 3516677 YP_266263.1 CDS SAR11_0843 NC_007205.1 811791 812075 R D-galactarate dehydratase/Altronate complement(811791..812075) Candidatus Pelagibacter ubique HTCC1062 3516678 YP_266264.1 CDS SAR11_0844 NC_007205.1 812187 813971 D catalyzes the formation of acetyl phosphate and sulfite from 2-sulfoacetaldehyde; is active when grown on taurine as a sole carbon source; sulfoacetaldehyde acetyltransferase 812187..813971 Candidatus Pelagibacter ubique HTCC1062 3516679 YP_266265.1 CDS smo NC_007205.1 814011 815612 D steroid monooxygenase 814011..815612 Candidatus Pelagibacter ubique HTCC1062 3516680 YP_266266.1 CDS SAR11_0846 NC_007205.1 815628 816377 D unknown specificity; short chain dehydrogenase 815628..816377 Candidatus Pelagibacter ubique HTCC1062 3516681 YP_266267.1 CDS SAR11_0847 NC_007205.1 816382 817686 D glycine/D-amino acid oxidase 816382..817686 Candidatus Pelagibacter ubique HTCC1062 3516682 YP_266268.1 CDS SAR11_0848 NC_007205.1 817687 820215 R permease involved in lysophospholipase L1 biosynthesis; ABC transporter complement(817687..820215) Candidatus Pelagibacter ubique HTCC1062 3516683 YP_266269.1 CDS SAR11_0850 NC_007205.1 820208 820873 R ABC transporter ATP-binding protein complement(820208..820873) Candidatus Pelagibacter ubique HTCC1062 3516684 YP_266270.1 CDS SAR11_0851 NC_007205.1 820872 821486 D arylesterase 820872..821486 Candidatus Pelagibacter ubique HTCC1062 3516685 YP_266271.1 CDS SAR11_0852 NC_007205.1 821501 822793 D homoserine dehydrogenase 821501..822793 Candidatus Pelagibacter ubique HTCC1062 3516686 YP_266272.1 CDS SAR11_0853 NC_007205.1 822790 823941 R X-Pro dipeptidase complement(822790..823941) Candidatus Pelagibacter ubique HTCC1062 3516687 YP_266273.1 CDS SAR11_0854 NC_007205.1 824061 824837 R fumarylacetoacetate (FAA) hydrolase family protein complement(824061..824837) Candidatus Pelagibacter ubique HTCC1062 3516688 YP_266274.1 CDS SAR11_0855 NC_007205.1 824837 825637 R M23/M37 family; peptidase complement(824837..825637) Candidatus Pelagibacter ubique HTCC1062 3516689 YP_266275.1 CDS SAR11_0856 NC_007205.1 825622 826380 R unknown specificity; short chain dehydrogenase complement(825622..826380) Candidatus Pelagibacter ubique HTCC1062 3516690 YP_266276.1 CDS SAR11_0857 NC_007205.1 826381 826971 R TerC family integral membrane protein complement(826381..826971) Candidatus Pelagibacter ubique HTCC1062 3516691 YP_266277.1 CDS betA NC_007205.1 826971 828566 R alcohol dehydrogenase complement(826971..828566) Candidatus Pelagibacter ubique HTCC1062 3516692 YP_266278.1 CDS fbp NC_007205.1 828655 829401 D contains rhodanese domain; peptidyl-prolyl isomerase 828655..829401 Candidatus Pelagibacter ubique HTCC1062 3516693 YP_266279.1 CDS SAR11_0860 NC_007205.1 829409 829825 R transcriptional regulator complement(829409..829825) Candidatus Pelagibacter ubique HTCC1062 3517019 YP_266280.1 CDS SAR11_0861 NC_007205.1 829950 830726 D unknown specificity; short chain dehydrogenase 829950..830726 Candidatus Pelagibacter ubique HTCC1062 3517020 YP_266281.1 CDS SAR11_0862 NC_007205.1 830726 832246 D aldehyde dehydrogenase 830726..832246 Candidatus Pelagibacter ubique HTCC1062 3517021 YP_266282.1 CDS SAR11_0863 NC_007205.1 832239 833165 D 3-hydroxyisobutyrate dehydrogenase family; MmsB-like protein 832239..833165 Candidatus Pelagibacter ubique HTCC1062 3517022 YP_266283.1 CDS SAR11_0864 NC_007205.1 833343 834434 D similar to COG4663: TRAP-type mannitol/chloroaromatic compound transport system; hypothetical protein 833343..834434 Candidatus Pelagibacter ubique HTCC1062 3517023 YP_266284.2 CDS SAR11_0865 NC_007205.1 834523 835182 D small permease component; TRAP-type mannitol/chloroaromatic compound transport system 834523..835182 Candidatus Pelagibacter ubique HTCC1062 3517024 YP_266285.1 CDS SAR11_0866 NC_007205.1 835182 836507 D large chain; mannitol transporter 835182..836507 Candidatus Pelagibacter ubique HTCC1062 3517025 YP_266286.1 CDS yyaM NC_007205.1 836512 837366 R transporter complement(836512..837366) Candidatus Pelagibacter ubique HTCC1062 3517026 YP_266287.1 CDS pucI NC_007205.1 837474 838931 D uracil, thiamine, allantoin; permease for cytosine/purines 837474..838931 Candidatus Pelagibacter ubique HTCC1062 3517027 YP_266288.1 CDS SAR11_0869 NC_007205.1 838936 839682 D unknown specificity; short chain dehydrogenase 838936..839682 Candidatus Pelagibacter ubique HTCC1062 3517028 YP_266289.1 CDS SAR11_0870 NC_007205.1 839935 840525 D hypothetical protein 839935..840525 Candidatus Pelagibacter ubique HTCC1062 3517029 YP_266290.1 CDS SAR11_0871 NC_007205.1 840528 840665 R transmembrane protein complement(840528..840665) Candidatus Pelagibacter ubique HTCC1062 3517030 YP_266291.1 CDS ybgC NC_007205.1 840723 841148 D 4-hydroxybenzoyl-CoA thioesterase 840723..841148 Candidatus Pelagibacter ubique HTCC1062 3517031 YP_266292.1 CDS ung NC_007205.1 841141 841815 R uracil-DNA glycosylase complement(841141..841815) Candidatus Pelagibacter ubique HTCC1062 3517032 YP_266293.1 CDS SAR11_0874 NC_007205.1 841818 842369 D phosphoglycerate mutase family protein 841818..842369 Candidatus Pelagibacter ubique HTCC1062 3517033 YP_266294.1 CDS SAR11_0875 NC_007205.1 842388 842525 D hypothetical protein 842388..842525 Candidatus Pelagibacter ubique HTCC1062 3517034 YP_266295.1 CDS SAR11_0876 NC_007205.1 842603 842779 R transmembrane protein complement(842603..842779) Candidatus Pelagibacter ubique HTCC1062 3517035 YP_266296.1 CDS SAR11_0877 NC_007205.1 842772 843023 R hypothetical protein complement(842772..843023) Candidatus Pelagibacter ubique HTCC1062 3517036 YP_266297.1 CDS tig NC_007205.1 843226 844659 D active site peptidylprolyl isomerase; trigger factor 843226..844659 Candidatus Pelagibacter ubique HTCC1062 3517003 YP_266298.1 CDS clpP NC_007205.1 844691 845302 D ATP-dependent Clp protease proteolytic subunit 844691..845302 Candidatus Pelagibacter ubique HTCC1062 3517004 YP_266299.1 CDS clpX NC_007205.1 845394 846662 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 845394..846662 Candidatus Pelagibacter ubique HTCC1062 3517005 YP_266300.1 CDS lon NC_007205.1 846722 849106 D Lon; ATP-dependent protease La 846722..849106 Candidatus Pelagibacter ubique HTCC1062 3517006 YP_266301.1 CDS nuoA NC_007205.1 849410 849778 D NADH dehydrogenase I subunit A 849410..849778 Candidatus Pelagibacter ubique HTCC1062 3517009 YP_266302.1 CDS nuoB NC_007205.1 849790 850311 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 849790..850311 Candidatus Pelagibacter ubique HTCC1062 3517010 YP_266303.1 CDS nuoC NC_007205.1 850317 850925 D NADH dehydrogenase I subunit C 850317..850925 Candidatus Pelagibacter ubique HTCC1062 3517011 YP_266304.1 CDS nuoD NC_007205.1 850909 852084 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 850909..852084 Candidatus Pelagibacter ubique HTCC1062 3517012 YP_266305.1 CDS nuoE NC_007205.1 852084 852692 D NADH dehydrogenase I subunit E 852084..852692 Candidatus Pelagibacter ubique HTCC1062 3517013 YP_266306.1 CDS nuoF NC_007205.1 852685 854016 D part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 852685..854016 Candidatus Pelagibacter ubique HTCC1062 3517014 YP_266307.1 CDS nuoG NC_007205.1 854009 856048 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 854009..856048 Candidatus Pelagibacter ubique HTCC1062 3517015 YP_266308.1 CDS nuoH NC_007205.1 856052 857050 D NADH dehydrogenase I subunit H 856052..857050 Candidatus Pelagibacter ubique HTCC1062 3517016 YP_266309.1 CDS nuoI NC_007205.1 857053 857538 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 857053..857538 Candidatus Pelagibacter ubique HTCC1062 3517017 YP_266310.1 CDS nuoJ NC_007205.1 857541 858173 D NADH dehydrogenase I subunit J 857541..858173 Candidatus Pelagibacter ubique HTCC1062 3517018 YP_266311.1 CDS nuoK NC_007205.1 858166 858477 D NADH dehydrogenase I subunit K 858166..858477 Candidatus Pelagibacter ubique HTCC1062 3516983 YP_266312.1 CDS nuoL NC_007205.1 858479 860392 D NADH dehydrogenase I subunit L 858479..860392 Candidatus Pelagibacter ubique HTCC1062 3516984 YP_266313.1 CDS nuoM NC_007205.1 860392 861885 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 860392..861885 Candidatus Pelagibacter ubique HTCC1062 3516985 YP_266314.1 CDS nuoN NC_007205.1 861885 863300 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 861885..863300 Candidatus Pelagibacter ubique HTCC1062 3516986 YP_266315.1 CDS birA NC_007205.1 863300 863863 D biotin-protein ligase 863300..863863 Candidatus Pelagibacter ubique HTCC1062 3516987 YP_266316.1 CDS yacB NC_007205.1 863860 864606 D Bordetella pertussis Bvg accessory factor; Bvg accessory factor 863860..864606 Candidatus Pelagibacter ubique HTCC1062 3516988 YP_266317.1 CDS SAR11_0900 NC_007205.1 864609 866264 D metallo-beta-lactamase family protein 864609..866264 Candidatus Pelagibacter ubique HTCC1062 3516989 YP_266318.1 CDS SAR11_0901 NC_007205.1 866265 866510 D hypothetical protein 866265..866510 Candidatus Pelagibacter ubique HTCC1062 3516990 YP_266319.1 CDS proS NC_007205.1 866512 867846 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 866512..867846 Candidatus Pelagibacter ubique HTCC1062 3516991 YP_266320.1 CDS ycfU NC_007205.1 867843 869075 D membrane spanning protein; ABC transporter 867843..869075 Candidatus Pelagibacter ubique HTCC1062 3516992 YP_266321.1 CDS ycfV NC_007205.1 869068 869754 D ABC transporter ATP-binding protein 869068..869754 Candidatus Pelagibacter ubique HTCC1062 3516993 YP_266322.1 CDS dnaE NC_007205.1 869738 873154 D DNA polymerase III subunit alpha 869738..873154 Candidatus Pelagibacter ubique HTCC1062 3516994 YP_266323.1 CDS rpsB NC_007205.1 873284 874105 D 30S ribosomal protein S2 873284..874105 Candidatus Pelagibacter ubique HTCC1062 3516995 YP_266324.1 CDS tsf NC_007205.1 874107 874958 D protein translation elongation factor Ts (EF-Ts) 874107..874958 Candidatus Pelagibacter ubique HTCC1062 3516996 YP_266325.1 CDS rrf NC_007205.1 874959 875510 D ribosome recycling factor 874959..875510 Candidatus Pelagibacter ubique HTCC1062 3516997 YP_266326.1 CDS SAR11_0910 NC_007205.1 875507 876184 D UDP diphosphate synthase 875507..876184 Candidatus Pelagibacter ubique HTCC1062 3516998 YP_266327.1 CDS cdsA NC_007205.1 876184 876846 D phosphatidate cytidylyltransferase 876184..876846 Candidatus Pelagibacter ubique HTCC1062 3516999 YP_266328.1 CDS yaeM NC_007205.1 876848 878014 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 876848..878014 Candidatus Pelagibacter ubique HTCC1062 3517000 YP_266329.1 CDS omp1 NC_007205.1 878022 880259 D hypothetical protein 878022..880259 Candidatus Pelagibacter ubique HTCC1062 3517001 YP_266330.1 CDS ompH NC_007205.1 880259 880783 D hypothetical protein 880259..880783 Candidatus Pelagibacter ubique HTCC1062 3517002 YP_266331.1 CDS fabZ NC_007205.1 880790 881230 D (3R)-hydroxymyristoyl-ACP dehydratase 880790..881230 Candidatus Pelagibacter ubique HTCC1062 3516964 YP_266332.1 CDS lpxD NC_007205.1 881283 882263 D glucosamine N-acyltransferase 881283..882263 Candidatus Pelagibacter ubique HTCC1062 3516965 YP_266333.1 CDS lpxA NC_007205.1 882260 883042 D acyl-ACP-UDP-N- acetylglucosamine O-acyltransferase 882260..883042 Candidatus Pelagibacter ubique HTCC1062 3516966 YP_266334.1 CDS SAR11_0918 NC_007205.1 883044 883829 D hypothetical protein 883044..883829 Candidatus Pelagibacter ubique HTCC1062 3516967 YP_266335.1 CDS lpxB NC_007205.1 883826 884962 D lipid-A-disaccharide synthase 883826..884962 Candidatus Pelagibacter ubique HTCC1062 3516968 YP_266336.1 CDS gltX NC_007205.1 884939 886339 R glutamyl-tRNA synthetase complement(884939..886339) Candidatus Pelagibacter ubique HTCC1062 3516969 YP_266337.1 CDS lexA NC_007205.1 886362 887039 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(886362..887039) Candidatus Pelagibacter ubique HTCC1062 3516970 YP_266338.1 CDS trpC NC_007205.1 887128 887919 R indole-3-glycerol phosphate synthase complement(887128..887919) Candidatus Pelagibacter ubique HTCC1062 3516971 YP_266339.1 CDS trpD NC_007205.1 887912 888904 R anthranilate phosphoribosyltransferase complement(887912..888904) Candidatus Pelagibacter ubique HTCC1062 3516972 YP_266340.1 CDS trpGD NC_007205.1 888901 889476 R anthranilate synthase component II complement(888901..889476) Candidatus Pelagibacter ubique HTCC1062 3516973 YP_266341.1 CDS trpE NC_007205.1 889476 890930 R anthranilate synthase component I-like protein complement(889476..890930) Candidatus Pelagibacter ubique HTCC1062 3516974 YP_266342.1 CDS SAR11_0926 NC_007205.1 890930 892351 R SurA-like protein complement(890930..892351) Candidatus Pelagibacter ubique HTCC1062 3516975 YP_266343.1 CDS tpiA NC_007205.1 892423 893148 D triosephosphate isomerase 892423..893148 Candidatus Pelagibacter ubique HTCC1062 3516976 YP_266344.1 CDS secG NC_007205.1 893154 893453 D preprotein translocase subunit SecG 893154..893453 Candidatus Pelagibacter ubique HTCC1062 3516977 YP_266345.1 CDS SAR11_0929 NC_007205.1 893557 895455 D similar to COG1538: Outer membrane protein.; Similar to TolC by Fugue analysis.; hypothetical protein 893557..895455 Candidatus Pelagibacter ubique HTCC1062 3516978 YP_266346.1 CDS SAR11_0930 NC_007205.1 895457 895702 R transmembrane protein complement(895457..895702) Candidatus Pelagibacter ubique HTCC1062 3516979 YP_266347.1 CDS SAR11_0931 NC_007205.1 895470 895697 D transmembrane protein 895470..895697 Candidatus Pelagibacter ubique HTCC1062 3516980 YP_266348.1 CDS SAR11_0932 NC_007205.1 895754 917707 D VCBS domain, Interpro ID: ipr010221; similar to COG3468: Type V secretory pathway, adhesin AidA; hypothetical protein 895754..917707 Candidatus Pelagibacter ubique HTCC1062 3516981 YP_266349.1 CDS acrA NC_007205.1 917722 918435 D similar to COG0845: Membrane-fusion protein; AcrA-like protein 917722..918435 Candidatus Pelagibacter ubique HTCC1062 3516982 YP_266350.1 CDS SAR11_0934 NC_007205.1 918432 919766 D similar to COG0845: Membrane-fusion protein; AcrB-like protein 918432..919766 Candidatus Pelagibacter ubique HTCC1062 3516945 YP_266351.1 CDS SAR11_0935 NC_007205.1 919763 921865 D peptidase M50 919763..921865 Candidatus Pelagibacter ubique HTCC1062 3516946 YP_266352.1 CDS SAR11_0936 NC_007205.1 921991 922563 D fimbrial protein pilin 921991..922563 Candidatus Pelagibacter ubique HTCC1062 3516947 YP_266353.1 CDS pyrG NC_007205.1 922651 924267 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 922651..924267 Candidatus Pelagibacter ubique HTCC1062 3516948 YP_266354.1 CDS kdsA NC_007205.1 924264 925088 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 924264..925088 Candidatus Pelagibacter ubique HTCC1062 3516949 YP_266355.1 CDS eno NC_007205.1 925089 926345 D C-terminal TIM barrel domain; enolase 925089..926345 Candidatus Pelagibacter ubique HTCC1062 3516950 YP_266356.1 CDS divIC NC_007205.1 926345 926647 D septum formation initiator 926345..926647 Candidatus Pelagibacter ubique HTCC1062 3516951 YP_266357.1 CDS lipA NC_007205.1 926637 927563 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 926637..927563 Candidatus Pelagibacter ubique HTCC1062 3516952 YP_266358.1 CDS SAR11_0942 NC_007205.1 927563 928000 D similar to Atu1441; hypothetical protein 927563..928000 Candidatus Pelagibacter ubique HTCC1062 3516953 YP_266359.1 CDS cinA NC_007205.1 928018 928509 R competence/damage-inducible protein CinA complement(928018..928509) Candidatus Pelagibacter ubique HTCC1062 3516954 YP_266360.1 CDS pgpA NC_007205.1 928476 928979 R phosphatidylglycerophosphatase A complement(928476..928979) Candidatus Pelagibacter ubique HTCC1062 3516955 YP_266361.1 CDS ispD NC_007205.1 928972 930087 R Includes: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; similar to Swiss-Prot Accession Number Q9PM68; IspD/ispF bifunctional enzyme complement(928972..930087) Candidatus Pelagibacter ubique HTCC1062 3516956 YP_266362.1 CDS ntrY NC_007205.1 930121 931902 D nitrogen regulation protein ntrY 930121..931902 Candidatus Pelagibacter ubique HTCC1062 3516957 YP_266363.1 CDS ntrX NC_007205.1 931902 933257 D nitrogen assimilation regulatory protein ntrX 931902..933257 Candidatus Pelagibacter ubique HTCC1062 3516958 YP_266364.1 CDS trkA NC_007205.1 933258 934649 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 933258..934649 Candidatus Pelagibacter ubique HTCC1062 3516959 YP_266365.1 CDS SAR11_0950 NC_007205.1 934654 936063 D TrkH-like cation transport protein 934654..936063 Candidatus Pelagibacter ubique HTCC1062 3516960 YP_266366.1 CDS yhdW NC_007205.1 936342 937382 D similar to amino acid binding protein Mesorhizobium loti; ABC transporter 936342..937382 Candidatus Pelagibacter ubique HTCC1062 3516962 YP_266367.1 CDS yhdX NC_007205.1 937448 938593 D similar to permease protein VC1361 Vibrio cholerae (strain N16961); amino acid ABC transporter 937448..938593 Candidatus Pelagibacter ubique HTCC1062 3516963 YP_266368.1 CDS yhdY NC_007205.1 938593 939873 D amino-acid ABC transporter permease protein yhdY 938593..939873 Candidatus Pelagibacter ubique HTCC1062 3516561 YP_266369.1 CDS yhdZ NC_007205.1 939877 940611 D general L-amino acid transport ATP-binding protein 939877..940611 Candidatus Pelagibacter ubique HTCC1062 3516562 YP_266370.1 CDS SAR11_0958 NC_007205.1 940786 941157 D transcriptional regulator 940786..941157 Candidatus Pelagibacter ubique HTCC1062 3516563 YP_266371.1 CDS SAR11_0959 NC_007205.1 941232 942389 D hypothetical protein 941232..942389 Candidatus Pelagibacter ubique HTCC1062 3516564 YP_266372.1 CDS valS NC_007205.1 942739 945366 D valine-tRNA ligase 942739..945366 Candidatus Pelagibacter ubique HTCC1062 3516567 YP_266373.1 CDS ilvD NC_007205.1 945366 947084 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 945366..947084 Candidatus Pelagibacter ubique HTCC1062 3516568 YP_266374.1 CDS manC NC_007205.1 947084 948286 D mannose-6-phosphate isomerase 947084..948286 Candidatus Pelagibacter ubique HTCC1062 3516569 YP_266375.1 CDS SAR11_0963 NC_007205.1 948344 948565 R hypothetical protein complement(948344..948565) Candidatus Pelagibacter ubique HTCC1062 3516570 YP_266376.1 CDS SAR11_0964 NC_007205.1 948678 949040 D ferric-uptake regulator 948678..949040 Candidatus Pelagibacter ubique HTCC1062 3516571 YP_266377.1 CDS SAR11_0965 NC_007205.1 949040 949438 D hypothetical protein 949040..949438 Candidatus Pelagibacter ubique HTCC1062 3516572 YP_266378.1 CDS yiaK NC_007205.1 949453 950451 D oxidoreductase YiaK 949453..950451 Candidatus Pelagibacter ubique HTCC1062 3516573 YP_266379.1 CDS xthA NC_007205.1 950443 951219 R exodeoxyribonuclease III complement(950443..951219) Candidatus Pelagibacter ubique HTCC1062 3516574 YP_266380.1 CDS SAR11_0968 NC_007205.1 951219 951536 R HesB-like domain-containing protein complement(951219..951536) Candidatus Pelagibacter ubique HTCC1062 3516575 YP_266381.1 CDS dgtP NC_007205.1 951587 952702 D dGTPase 951587..952702 Candidatus Pelagibacter ubique HTCC1062 3516576 YP_266382.1 CDS argS NC_007205.1 952702 954435 D arginine-tRNA ligase 952702..954435 Candidatus Pelagibacter ubique HTCC1062 3516577 YP_266383.1 CDS SAR11_0971 NC_007205.1 954435 954698 D hypothetical protein 954435..954698 Candidatus Pelagibacter ubique HTCC1062 3517338 YP_266384.1 CDS SAR11_0972 NC_007205.1 954688 955638 D family 3; glycosyl hydrolase 954688..955638 Candidatus Pelagibacter ubique HTCC1062 3517339 YP_266385.1 CDS scpA NC_007205.1 955647 956387 D segregation and condensation protein a 955647..956387 Candidatus Pelagibacter ubique HTCC1062 3517340 YP_266386.1 CDS scpB NC_007205.1 956384 957085 D segregation and condensation protein b 956384..957085 Candidatus Pelagibacter ubique HTCC1062 3517341 YP_266387.1 CDS tatA NC_007205.1 957128 957328 D twin-arginine translocation protein TatA 957128..957328 Candidatus Pelagibacter ubique HTCC1062 3517342 YP_266388.1 CDS tatB NC_007205.1 957334 957555 D twin-arginine translocation protein TatB 957334..957555 Candidatus Pelagibacter ubique HTCC1062 3517343 YP_266389.1 CDS tatC NC_007205.1 957542 958306 D sec-independent protein translocase protein tatC 957542..958306 Candidatus Pelagibacter ubique HTCC1062 3517344 YP_266390.1 CDS serS NC_007205.1 958299 959558 D serine-tRNA ligase 958299..959558 Candidatus Pelagibacter ubique HTCC1062 3517345 YP_266391.1 CDS yajC NC_007205.1 959612 959896 D hypothetical protein 959612..959896 Candidatus Pelagibacter ubique HTCC1062 3517346 YP_266392.1 CDS secD NC_007205.1 959909 961462 D protein-export membrane protein SECD 959909..961462 Candidatus Pelagibacter ubique HTCC1062 3517347 YP_266393.1 CDS secF NC_007205.1 961462 962349 D preprotein translocase subunit SecF 961462..962349 Candidatus Pelagibacter ubique HTCC1062 3517348 YP_266394.1 CDS SAR11_0982 NC_007205.1 962352 962945 R hypothetical protein complement(962352..962945) Candidatus Pelagibacter ubique HTCC1062 3517349 YP_266395.1 CDS uvrA NC_007205.1 962973 965852 R excinuclease ABC subunit A complement(962973..965852) Candidatus Pelagibacter ubique HTCC1062 3517350 YP_266396.1 CDS ssb NC_007205.1 965942 966400 D helix-destabilizing protein; single-strand binding protein (ssb) 965942..966400 Candidatus Pelagibacter ubique HTCC1062 3517351 YP_266397.1 CDS gyrA NC_007205.1 966406 968955 D DNA gyrase subunit A 966406..968955 Candidatus Pelagibacter ubique HTCC1062 3517352 YP_266398.1 CDS kdtB NC_007205.1 968955 969449 D pantetheine-phosphate adenylyltransferase 968955..969449 Candidatus Pelagibacter ubique HTCC1062 3517353 YP_266399.2 CDS ppiB NC_007205.1 969442 969996 D peptidyl-prolyl isomerase 969442..969996 Candidatus Pelagibacter ubique HTCC1062 3517354 YP_266400.1 CDS tgt NC_007205.1 970015 971127 D queuine tRNA-ribosyltransferase 970015..971127 Candidatus Pelagibacter ubique HTCC1062 3517355 YP_266401.1 CDS SAR11_0989 NC_007205.1 971129 971263 R hypothetical protein complement(971129..971263) Candidatus Pelagibacter ubique HTCC1062 3517356 YP_266402.1 CDS SAR11_0991 NC_007205.1 971424 972200 R M48 family peptidase complement(971424..972200) Candidatus Pelagibacter ubique HTCC1062 3517893 YP_266403.1 CDS SAR11_0992 NC_007205.1 972375 972989 D hypothetical protein 972375..972989 Candidatus Pelagibacter ubique HTCC1062 3517894 YP_266404.1 CDS recG NC_007205.1 972986 975037 R ATP-dependent DNA helicase RecG complement(972986..975037) Candidatus Pelagibacter ubique HTCC1062 3517895 YP_266405.1 CDS SAR11_0994 NC_007205.1 975062 975328 D hypothetical protein 975062..975328 Candidatus Pelagibacter ubique HTCC1062 3517896 YP_266406.1 CDS rarD NC_007205.1 975511 976392 D rarD protein 975511..976392 Candidatus Pelagibacter ubique HTCC1062 3517898 YP_266407.1 CDS mltB NC_007205.1 976379 977380 D similar to Shewanella oneidensis MR-1 gb|AAN55045.1; membrane-bound lytic transglycosylase-like protein 976379..977380 Candidatus Pelagibacter ubique HTCC1062 3517899 YP_266408.1 CDS SAR11_0997 NC_007205.1 977370 978128 D hypothetical protein 977370..978128 Candidatus Pelagibacter ubique HTCC1062 3517900 YP_266409.1 CDS dacC NC_007205.1 978121 979272 D serine-type D-Ala-D-Ala carboxypeptidase 978121..979272 Candidatus Pelagibacter ubique HTCC1062 3517901 YP_266410.1 CDS tmk NC_007205.1 979265 979876 D thymidylate kinase 979265..979876 Candidatus Pelagibacter ubique HTCC1062 3517902 YP_266411.1 CDS holB NC_007205.1 979881 980813 D delta prime subunit; DNA polymerase III 979881..980813 Candidatus Pelagibacter ubique HTCC1062 3517903 YP_266412.1 CDS metS NC_007205.1 980814 982355 D methionyl-tRNA synthetase 980814..982355 Candidatus Pelagibacter ubique HTCC1062 3517904 YP_266413.1 CDS SAR11_1002 NC_007205.1 982348 983112 D TatD related DNase 982348..983112 Candidatus Pelagibacter ubique HTCC1062 3517905 YP_266414.1 CDS SAR11_1003 NC_007205.1 983112 983891 D metallo-beta-lactamase family protein 983112..983891 Candidatus Pelagibacter ubique HTCC1062 3517906 YP_266415.1 CDS bsaA NC_007205.1 983880 984392 R glutathione peroxidase complement(983880..984392) Candidatus Pelagibacter ubique HTCC1062 3517907 YP_266416.1 CDS nhaA NC_007205.1 984438 985544 R Na+/H+ antiporter 1 complement(984438..985544) Candidatus Pelagibacter ubique HTCC1062 3517908 YP_266417.1 CDS SAR11_1006 NC_007205.1 985615 986127 R hypothetical protein complement(985615..986127) Candidatus Pelagibacter ubique HTCC1062 3517909 YP_266418.1 CDS ndufs4 NC_007205.1 986302 986583 D ETC complex I subunit region 986302..986583 Candidatus Pelagibacter ubique HTCC1062 3517443 YP_266419.1 CDS sbmA NC_007205.1 986586 987578 D in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transporter 986586..987578 Candidatus Pelagibacter ubique HTCC1062 3517444 YP_266420.1 CDS glpX NC_007205.1 987578 988525 D type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 987578..988525 Candidatus Pelagibacter ubique HTCC1062 3517445 YP_266421.1 CDS recJ NC_007205.1 988522 990216 D single-stranded-DNA-specific exonuclease RecJ 988522..990216 Candidatus Pelagibacter ubique HTCC1062 3517446 YP_266422.1 CDS SAR11_1011 NC_007205.1 990347 990598 D C subunit, N-terminal; excinuclease ABC subunit C 990347..990598 Candidatus Pelagibacter ubique HTCC1062 3517448 YP_266423.1 CDS SAR11_1012 NC_007205.1 990598 992703 D group 1 glycosyl transferase 990598..992703 Candidatus Pelagibacter ubique HTCC1062 3517449 YP_266424.1 CDS yxkH NC_007205.1 992704 993414 D Xylanase/chitin deacetylase family enzyme; polysaccharide deacetylase 992704..993414 Candidatus Pelagibacter ubique HTCC1062 3517450 YP_266425.1 CDS SAR11_1014 NC_007205.1 993416 994618 D similar to Escherichia coli gb|AAL67563.1; pyridoxamine 5-phosphate-dependent dehydrase 993416..994618 Candidatus Pelagibacter ubique HTCC1062 3517451 YP_266426.1 CDS SAR11_1015 NC_007205.1 994615 995427 D NAD dependent epimerase/dehydratase f 994615..995427 Candidatus Pelagibacter ubique HTCC1062 3517452 YP_266427.1 CDS SAR11_1016 NC_007205.1 995434 996108 D hypothetical protein 995434..996108 Candidatus Pelagibacter ubique HTCC1062 3517453 YP_266428.1 CDS SAR11_1017 NC_007205.1 996113 997066 D hypothetical protein 996113..997066 Candidatus Pelagibacter ubique HTCC1062 3517454 YP_266429.1 CDS SAR11_1018 NC_007205.1 997089 997862 R methyltransferase FkbM complement(997089..997862) Candidatus Pelagibacter ubique HTCC1062 3517455 YP_266430.1 CDS xerD NC_007205.1 997872 998828 R integrase/recombinase xerD-like protein complement(997872..998828) Candidatus Pelagibacter ubique HTCC1062 3517456 YP_266431.1 CDS SAR11_1020 NC_007205.1 999127 999570 D acetyltransferase 999127..999570 Candidatus Pelagibacter ubique HTCC1062 3517457 YP_266432.1 CDS ada NC_007205.1 999542 999829 D 6-O-methylguanine DNA methyltransferase 999542..999829 Candidatus Pelagibacter ubique HTCC1062 3517458 YP_266433.1 CDS SAR11_1022 NC_007205.1 1000426 1001238 R DMT family permease complement(1000426..1001238) Candidatus Pelagibacter ubique HTCC1062 3517422 YP_266434.1 CDS SAR11_1023 NC_007205.1 1001292 1002194 R similar to Pseudomonas aeruginosa PA01 pir||A83623; hypothetical protein complement(1001292..1002194) Candidatus Pelagibacter ubique HTCC1062 3517423 YP_266435.1 CDS hom NC_007205.1 1002194 1003486 R homoserine dehydrogenase complement(1002194..1003486) Candidatus Pelagibacter ubique HTCC1062 3517424 YP_266436.1 CDS SAR11_1026 NC_007205.1 1003487 1003711 R hypothetical protein complement(1003487..1003711) Candidatus Pelagibacter ubique HTCC1062 3517425 YP_266437.1 CDS argC NC_007205.1 1003708 1004730 R N-acetyl-gamma-glutamyl-phosphate reductase complement(1003708..1004730) Candidatus Pelagibacter ubique HTCC1062 3517426 YP_266438.1 CDS rpsI NC_007205.1 1004766 1005215 R 30S ribosomal protein S9 complement(1004766..1005215) Candidatus Pelagibacter ubique HTCC1062 3517427 YP_266439.1 CDS rplM NC_007205.1 1005217 1005678 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1005217..1005678) Candidatus Pelagibacter ubique HTCC1062 3517428 YP_266440.1 CDS metY NC_007205.1 1005891 1007219 D O-acetylhomoserine (thiol)-lyase 1005891..1007219 Candidatus Pelagibacter ubique HTCC1062 3517429 YP_266441.1 CDS coxW NC_007205.1 1007212 1008222 R similar to BA483f11.2.1 cox15 (yeast); cytochrome c oxidase assembly protein (isoform 1) complement(1007212..1008222) Candidatus Pelagibacter ubique HTCC1062 3517430 YP_266442.1 CDS SAR11_1032 NC_007205.1 1008265 1008555 D chorismate mutase 1008265..1008555 Candidatus Pelagibacter ubique HTCC1062 3517431 YP_266443.1 CDS rpmG NC_007205.1 1008558 1008749 R 50S ribosomal protein L33 complement(1008558..1008749) Candidatus Pelagibacter ubique HTCC1062 3517432 YP_266444.1 CDS merR NC_007205.1 1008751 1009128 R merR family; transcriptional regulator complement(1008751..1009128) Candidatus Pelagibacter ubique HTCC1062 3517433 YP_266445.1 CDS himA NC_007205.1 1009118 1009426 R DNA-binding protein complement(1009118..1009426) Candidatus Pelagibacter ubique HTCC1062 3517434 YP_266446.1 CDS plsX NC_007205.1 1009420 1010421 R fatty acid/phospholipid synthesis protein PlsX complement(1009420..1010421) Candidatus Pelagibacter ubique HTCC1062 3517435 YP_266447.1 CDS rpmF NC_007205.1 1010436 1010618 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(1010436..1010618) Candidatus Pelagibacter ubique HTCC1062 3517436 YP_266448.1 CDS SAR11_1038 NC_007205.1 1010626 1011093 R hypothetical protein complement(1010626..1011093) Candidatus Pelagibacter ubique HTCC1062 3517437 YP_266449.1 CDS SAR11_1039 NC_007205.1 1011092 1011556 D hypothetical protein 1011092..1011556 Candidatus Pelagibacter ubique HTCC1062 3517438 YP_266450.1 CDS hppA NC_007205.1 1011564 1013669 R pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase complement(1011564..1013669) Candidatus Pelagibacter ubique HTCC1062 3517439 YP_266451.1 CDS thiL NC_007205.1 1013756 1014715 R thiamine-phosphate kinase complement(1013756..1014715) Candidatus Pelagibacter ubique HTCC1062 3517440 YP_266452.1 CDS nusB NC_007205.1 1014708 1015112 R antitermination protein NusB complement(1014708..1015112) Candidatus Pelagibacter ubique HTCC1062 3517441 YP_266453.1 CDS ribH NC_007205.1 1015115 1015501 R riboflavin synthase complement(1015115..1015501) Candidatus Pelagibacter ubique HTCC1062 3517383 YP_266454.1 CDS ribA NC_007205.1 1015501 1016601 R GTP cyclohydrolase II complement(1015501..1016601) Candidatus Pelagibacter ubique HTCC1062 3517384 YP_266455.1 CDS ribB NC_007205.1 1016588 1017181 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1016588..1017181) Candidatus Pelagibacter ubique HTCC1062 3517385 YP_266456.1 CDS ribD NC_007205.1 1017186 1018241 R 5-amino-6-(5-phosphoribosylamino)uracil reductase complement(1017186..1018241) Candidatus Pelagibacter ubique HTCC1062 3517386 YP_266457.1 CDS nrdR NC_007205.1 1018267 1018725 R transcriptional regulator NrdR complement(1018267..1018725) Candidatus Pelagibacter ubique HTCC1062 3517387 YP_266458.1 CDS glyA NC_007205.1 1018725 1020035 R glycine hydroxymethyltransferase complement(1018725..1020035) Candidatus Pelagibacter ubique HTCC1062 3517388 YP_266459.1 CDS rpiB NC_007205.1 1020038 1020463 R ribose-5-phosphate isomerase complement(1020038..1020463) Candidatus Pelagibacter ubique HTCC1062 3517389 YP_266460.1 CDS SAR11_1050 NC_007205.1 1020465 1021106 R hypothetical protein complement(1020465..1021106) Candidatus Pelagibacter ubique HTCC1062 3517390 YP_266461.1 CDS hemB NC_007205.1 1021179 1022168 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1021179..1022168 Candidatus Pelagibacter ubique HTCC1062 3517391 YP_266462.1 CDS recO NC_007205.1 1022169 1022849 R recombination protein O complement(1022169..1022849) Candidatus Pelagibacter ubique HTCC1062 3517392 YP_266463.1 CDS rnc NC_007205.1 1022846 1023514 R ribonuclease III complement(1022846..1023514) Candidatus Pelagibacter ubique HTCC1062 3517393 YP_266464.1 CDS sipF NC_007205.1 1023514 1024248 R signal peptidase I complement(1023514..1024248) Candidatus Pelagibacter ubique HTCC1062 3517394 YP_266465.1 CDS acpS NC_007205.1 1024245 1024631 R Holo-[acyl-carrier protein] synthase (Holo-ACP synthase) complement(1024245..1024631) Candidatus Pelagibacter ubique HTCC1062 3517395 YP_266466.1 CDS pdxJ NC_007205.1 1024634 1025353 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(1024634..1025353) Candidatus Pelagibacter ubique HTCC1062 3517396 YP_266467.1 CDS pyrE NC_007205.1 1025350 1025937 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(1025350..1025937) Candidatus Pelagibacter ubique HTCC1062 3517397 YP_266468.1 CDS SAR11_1058 NC_007205.1 1025894 1027639 R GTP pyrophosphokinase complement(1025894..1027639) Candidatus Pelagibacter ubique HTCC1062 3517398 YP_266469.1 CDS folK NC_007205.1 1027659 1028180 R 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase complement(1027659..1028180) Candidatus Pelagibacter ubique HTCC1062 3517399 YP_266470.1 CDS smpB NC_007205.1 1028146 1028616 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1028146..1028616) Candidatus Pelagibacter ubique HTCC1062 3517400 YP_266471.1 CDS dapA NC_007205.1 1028616 1029497 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(1028616..1029497) Candidatus Pelagibacter ubique HTCC1062 3517401 YP_266472.1 CDS slt NC_007205.1 1029539 1031752 D lytic murein transglycosylase 1029539..1031752 Candidatus Pelagibacter ubique HTCC1062 3517364 YP_266473.1 CDS soxB NC_007205.1 1031913 1033166 D sarcosine oxidase 1031913..1033166 Candidatus Pelagibacter ubique HTCC1062 3517366 YP_266474.1 CDS soxD NC_007205.1 1033166 1033441 D sarcosine oxidase subunit delta 1033166..1033441 Candidatus Pelagibacter ubique HTCC1062 3517367 YP_266475.1 CDS soxA NC_007205.1 1033446 1036454 D sarcosine oxidase subunit alpha 1033446..1036454 Candidatus Pelagibacter ubique HTCC1062 3517368 YP_266476.2 CDS soxG NC_007205.1 1036447 1037010 D sarcosine oxidase subunit gamma 1036447..1037010 Candidatus Pelagibacter ubique HTCC1062 3517369 YP_266477.1 CDS pheC NC_007205.1 1037047 1037814 D cyclohexadienyl dehydratase 1037047..1037814 Candidatus Pelagibacter ubique HTCC1062 3517370 YP_266478.1 CDS glnP NC_007205.1 1037915 1038595 D ABC transporter permease 1037915..1038595 Candidatus Pelagibacter ubique HTCC1062 3517371 YP_266479.1 CDS SAR11_1071 NC_007205.1 1038595 1038858 D N-acetyltransferase GCN5 1038595..1038858 Candidatus Pelagibacter ubique HTCC1062 3517372 YP_266480.1 CDS SAR11_1072 NC_007205.1 1038898 1039383 R nuclease-like protein complement(1038898..1039383) Candidatus Pelagibacter ubique HTCC1062 3517373 YP_266481.1 CDS norM NC_007205.1 1039346 1040716 R similar to Geobacter sulfurreducens PCA gb|AAR36025.1| MATE efflux family protein; matE efflux family protein complement(1039346..1040716) Candidatus Pelagibacter ubique HTCC1062 3517374 YP_266482.1 CDS yceA NC_007205.1 1040726 1041631 R similar to Shewanella oneidensis MR-1 sp|Q8EES8|YM90_SHEON hypothetical UPF0176 protein; rhodanese domain-containing protein complement(1040726..1041631) Candidatus Pelagibacter ubique HTCC1062 3517375 YP_266483.1 CDS SAR11_1075 NC_007205.1 1041631 1042281 R O-methyltransferase complement(1041631..1042281) Candidatus Pelagibacter ubique HTCC1062 3517376 YP_266484.1 CDS gatB NC_007205.1 1042318 1043796 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1042318..1043796) Candidatus Pelagibacter ubique HTCC1062 3517377 YP_266485.1 CDS gatA NC_007205.1 1043797 1045254 R glutamyl-tRNA(Gln) amidotransferase subunit A complement(1043797..1045254) Candidatus Pelagibacter ubique HTCC1062 3517378 YP_266486.1 CDS gatC NC_007205.1 1045254 1045541 R Glu-tRNAGln amidotransferase C subunit complement(1045254..1045541) Candidatus Pelagibacter ubique HTCC1062 3517379 YP_266487.1 CDS SAR11_1079 NC_007205.1 1045593 1046048 D Holliday junction resolvase 1045593..1046048 Candidatus Pelagibacter ubique HTCC1062 3517380 YP_266488.1 CDS pyrB NC_007205.1 1046091 1047032 D aspartate carbamoyltransferase 1046091..1047032 Candidatus Pelagibacter ubique HTCC1062 3517381 YP_266489.1 CDS pyrC NC_007205.1 1047033 1048319 D dihydroorotase 1047033..1048319 Candidatus Pelagibacter ubique HTCC1062 3517382 YP_266490.1 CDS ygiH NC_007205.1 1048322 1048897 D hypothetical protein 1048322..1048897 Candidatus Pelagibacter ubique HTCC1062 3517243 YP_266491.1 CDS topA NC_007205.1 1048935 1051526 D DNA topoisomerase I 1048935..1051526 Candidatus Pelagibacter ubique HTCC1062 3517244 YP_266492.1 CDS SAR11_1084 NC_007205.1 1051523 1051825 D hypothetical protein 1051523..1051825 Candidatus Pelagibacter ubique HTCC1062 3517245 YP_266493.1 CDS SAR11_1085 NC_007205.1 1051828 1052289 D endoribonuclease L-PSP 1051828..1052289 Candidatus Pelagibacter ubique HTCC1062 3517246 YP_266494.1 CDS ugd NC_007205.1 1052286 1053584 R udpglucose 6-dehydrogenase complement(1052286..1053584) Candidatus Pelagibacter ubique HTCC1062 3517247 YP_266495.1 CDS galU NC_007205.1 1053581 1054396 R UTP-glucose-1-phosphate uridylyltransferase complement(1053581..1054396) Candidatus Pelagibacter ubique HTCC1062 3517248 YP_266496.1 CDS panC NC_007205.1 1054401 1055243 D pantoate-beta-alanine ligase 1054401..1055243 Candidatus Pelagibacter ubique HTCC1062 3517249 YP_266497.1 CDS mgtE NC_007205.1 1055240 1056613 R magnesium transport protein mgtE complement(1055240..1056613) Candidatus Pelagibacter ubique HTCC1062 3517250 YP_266498.1 CDS rfaL NC_007205.1 1056675 1057295 D lipoate-protein ligase B 1056675..1057295 Candidatus Pelagibacter ubique HTCC1062 3517251 YP_266499.1 CDS rluC NC_007205.1 1057276 1058190 R ribosomal large subunit pseudouridine synthase C complement(1057276..1058190) Candidatus Pelagibacter ubique HTCC1062 3517252 YP_266500.1 CDS rplQ NC_007205.1 1058215 1058652 R 50S ribosomal protein L17 complement(1058215..1058652) Candidatus Pelagibacter ubique HTCC1062 3517253 YP_266501.1 CDS rpoA NC_007205.1 1058652 1059680 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1058652..1059680) Candidatus Pelagibacter ubique HTCC1062 3517254 YP_266502.1 CDS rpsK NC_007205.1 1059684 1060136 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1059684..1060136) Candidatus Pelagibacter ubique HTCC1062 3517255 YP_266503.1 CDS rpsM NC_007205.1 1060144 1060527 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1060144..1060527) Candidatus Pelagibacter ubique HTCC1062 3517256 YP_266504.1 CDS adk NC_007205.1 1060583 1061224 R adenylate kinase complement(1060583..1061224) Candidatus Pelagibacter ubique HTCC1062 3517257 YP_266505.1 CDS secY NC_007205.1 1061229 1062509 R preprotein translocase subunit SecY complement(1061229..1062509) Candidatus Pelagibacter ubique HTCC1062 3517258 YP_266506.1 CDS rplO NC_007205.1 1062520 1062981 R 50S ribosomal protein L15 complement(1062520..1062981) Candidatus Pelagibacter ubique HTCC1062 3517259 YP_266507.1 CDS rpsE NC_007205.1 1062981 1063493 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1062981..1063493) Candidatus Pelagibacter ubique HTCC1062 3517260 YP_266508.1 CDS rplR NC_007205.1 1063496 1063852 R 50S ribosomal protein L18 complement(1063496..1063852) Candidatus Pelagibacter ubique HTCC1062 3517261 YP_266509.1 CDS rplF NC_007205.1 1063852 1064391 R 50S ribosomal protein L6 complement(1063852..1064391) Candidatus Pelagibacter ubique HTCC1062 3517299 YP_266510.1 CDS rpsH NC_007205.1 1064391 1064786 R 30S ribosomal protein S8 complement(1064391..1064786) Candidatus Pelagibacter ubique HTCC1062 3517300 YP_266511.1 CDS rpsN NC_007205.1 1064797 1065102 R 30S ribosomal protein S14 complement(1064797..1065102) Candidatus Pelagibacter ubique HTCC1062 3517301 YP_266512.1 CDS rplE NC_007205.1 1065105 1065659 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1065105..1065659) Candidatus Pelagibacter ubique HTCC1062 3517302 YP_266513.1 CDS rplX NC_007205.1 1065659 1065907 R 50S ribosomal protein L24 complement(1065659..1065907) Candidatus Pelagibacter ubique HTCC1062 3517303 YP_266514.1 CDS rplN NC_007205.1 1065908 1066276 R 50S ribosomal protein L14 complement(1065908..1066276) Candidatus Pelagibacter ubique HTCC1062 3517304 YP_266515.1 CDS rpsQ NC_007205.1 1066273 1066509 R 30S ribosomal protein S17 complement(1066273..1066509) Candidatus Pelagibacter ubique HTCC1062 3517305 YP_266516.1 CDS rpmC NC_007205.1 1066502 1066693 R 50S ribosomal protein L29 complement(1066502..1066693) Candidatus Pelagibacter ubique HTCC1062 3517306 YP_266517.1 CDS rplP NC_007205.1 1066695 1067105 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1066695..1067105) Candidatus Pelagibacter ubique HTCC1062 3517307 YP_266518.1 CDS rpsC NC_007205.1 1067108 1067788 R 30S ribosomal protein S3 complement(1067108..1067788) Candidatus Pelagibacter ubique HTCC1062 3517308 YP_266519.1 CDS rplV NC_007205.1 1067772 1068170 R 50S ribosomal protein L22 complement(1067772..1068170) Candidatus Pelagibacter ubique HTCC1062 3517309 YP_266520.1 CDS rpsS NC_007205.1 1068173 1068466 R 30S ribosomal protein S19 complement(1068173..1068466) Candidatus Pelagibacter ubique HTCC1062 3517310 YP_266521.1 CDS rplB NC_007205.1 1068466 1069311 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1068466..1069311) Candidatus Pelagibacter ubique HTCC1062 3517311 YP_266522.1 CDS rplW NC_007205.1 1069314 1069607 R 50S ribosomal protein L23 complement(1069314..1069607) Candidatus Pelagibacter ubique HTCC1062 3517312 YP_266523.1 CDS rplD NC_007205.1 1069609 1070232 R 50S ribosomal protein L4 complement(1069609..1070232) Candidatus Pelagibacter ubique HTCC1062 3517313 YP_266524.1 CDS rplC NC_007205.1 1070232 1070942 R 50S ribosomal protein L3 complement(1070232..1070942) Candidatus Pelagibacter ubique HTCC1062 3517314 YP_266525.1 CDS rpsJ NC_007205.1 1070945 1071253 R 30S ribosomal protein S10 complement(1070945..1071253) Candidatus Pelagibacter ubique HTCC1062 3517315 YP_266526.1 CDS fusA NC_007205.1 1071259 1073337 R substrain RIMD 0; translation elongation factor EF-G complement(1071259..1073337) Candidatus Pelagibacter ubique HTCC1062 3517316 YP_266527.1 CDS rpsG NC_007205.1 1073344 1073814 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(1073344..1073814) Candidatus Pelagibacter ubique HTCC1062 3517317 YP_266528.1 CDS rpsL NC_007205.1 1073817 1074188 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(1073817..1074188) Candidatus Pelagibacter ubique HTCC1062 3517318 YP_266529.1 CDS rpoC NC_007205.1 1074360 1078529 R DNA-directed RNA polymerase subunit beta' complement(1074360..1078529) Candidatus Pelagibacter ubique HTCC1062 3517474 YP_266530.1 CDS rpoB NC_007205.1 1078532 1082623 R DNA-directed RNA polymerase complement(1078532..1082623) Candidatus Pelagibacter ubique HTCC1062 3517475 YP_266531.1 CDS rplL NC_007205.1 1082679 1083044 R 50S ribosomal protein L31 complement(1082679..1083044) Candidatus Pelagibacter ubique HTCC1062 3517476 YP_266532.1 CDS rplJ NC_007205.1 1083072 1083572 R 50S ribosomal protein L10 complement(1083072..1083572) Candidatus Pelagibacter ubique HTCC1062 3517477 YP_266533.1 CDS rplA NC_007205.1 1083578 1084267 R 50S ribosomal protein L1 complement(1083578..1084267) Candidatus Pelagibacter ubique HTCC1062 3517478 YP_266534.1 CDS rplK NC_007205.1 1084267 1084692 R 50S ribosomal protein L11 complement(1084267..1084692) Candidatus Pelagibacter ubique HTCC1062 3517479 YP_266535.1 CDS nusG NC_007205.1 1084692 1085222 R transcription antitermination protein NusG complement(1084692..1085222) Candidatus Pelagibacter ubique HTCC1062 3517480 YP_266536.1 CDS secE NC_007205.1 1085222 1085413 R protein secE/sec61-gamma protein complement(1085222..1085413) Candidatus Pelagibacter ubique HTCC1062 3517481 YP_266537.1 CDS tufB NC_007205.1 1085516 1086706 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(1085516..1086706) Candidatus Pelagibacter ubique HTCC1062 3517483 YP_266538.1 CDS SAR11_1131 NC_007205.1 1087091 1087834 D SpoU rRNA methylase family 1087091..1087834 Candidatus Pelagibacter ubique HTCC1062 3517486 YP_266539.1 CDS ppnK NC_007205.1 1087948 1088727 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(1087948..1088727) Candidatus Pelagibacter ubique HTCC1062 3517488 YP_266540.1 CDS SAR11_1133 NC_007205.1 1088896 1089297 R similar to Clostridium perfringens dbj|BAB80118.1|; hypothetical protein complement(1088896..1089297) Candidatus Pelagibacter ubique HTCC1062 3517876 YP_266541.1 CDS SAR11_1134 NC_007205.1 1089302 1090051 R similar to COG1058: Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; hypothetical protein complement(1089302..1090051) Candidatus Pelagibacter ubique HTCC1062 3517877 YP_266542.1 CDS sfsA NC_007205.1 1090073 1090771 D sugar fermentation stimulation protein 1090073..1090771 Candidatus Pelagibacter ubique HTCC1062 3517878 YP_266543.1 CDS map NC_007205.1 1090764 1091534 D methionine aminopeptidase 1090764..1091534 Candidatus Pelagibacter ubique HTCC1062 3517879 YP_266544.1 CDS purB NC_007205.1 1091538 1092830 D adenylosuccinate lyase 1091538..1092830 Candidatus Pelagibacter ubique HTCC1062 3517880 YP_266545.1 CDS purC NC_007205.1 1092830 1093612 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1092830..1093612 Candidatus Pelagibacter ubique HTCC1062 3517881 YP_266546.1 CDS SAR11_1139 NC_007205.1 1093614 1093856 D purQ-like protein; phosphoribosylformylglycinamidine (FGAM) synthase 1093614..1093856 Candidatus Pelagibacter ubique HTCC1062 3517882 YP_266547.1 CDS purQ NC_007205.1 1093863 1094546 D phosphoribosylformylglycinamidine synthase I 1093863..1094546 Candidatus Pelagibacter ubique HTCC1062 3517883 YP_266548.1 CDS purL NC_007205.1 1094546 1096738 D phosphoribosylformylglycinamidine synthase II (FGAM synthase II) 1094546..1096738 Candidatus Pelagibacter ubique HTCC1062 3517884 YP_266549.1 CDS SAR11_1142 NC_007205.1 1096740 1096970 D BolA-like protein 1096740..1096970 Candidatus Pelagibacter ubique HTCC1062 3517885 YP_266550.1 CDS grlA NC_007205.1 1096970 1097302 D glutaredoxin 1096970..1097302 Candidatus Pelagibacter ubique HTCC1062 3517886 YP_266551.1 CDS cfa NC_007205.1 1097307 1098497 R cyclopropane-fatty-acyl-phospholipid synthase complement(1097307..1098497) Candidatus Pelagibacter ubique HTCC1062 3517887 YP_266552.1 CDS rpsD NC_007205.1 1098633 1099250 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(1098633..1099250) Candidatus Pelagibacter ubique HTCC1062 3517888 YP_266553.1 CDS SAR11_1146 NC_007205.1 1099291 1100004 R SpoU rRNA methylase family complement(1099291..1100004) Candidatus Pelagibacter ubique HTCC1062 3517889 YP_266554.1 CDS SAR11_1147 NC_007205.1 1100004 1101605 R catalyzes the formation of 2-isopropylmalate from 1-methyl-2-oxobutanoate and acetyl-CoA; alpha-isopropylmalate synthase complement(1100004..1101605) Candidatus Pelagibacter ubique HTCC1062 3517890 YP_266555.1 CDS cysS NC_007205.1 1101602 1102963 R cysteinyl-tRNA synthetase complement(1101602..1102963) Candidatus Pelagibacter ubique HTCC1062 3517891 YP_266556.1 CDS nadE NC_007205.1 1103009 1103695 R NH(3)-dependent NAD+ synthetase NadE complement(1103009..1103695) Candidatus Pelagibacter ubique HTCC1062 3517892 YP_266557.1 CDS dhs NC_007205.1 1103786 1105165 R 2-dehydro-3-deoxyphosphooctonate aldolase complement(1103786..1105165) Candidatus Pelagibacter ubique HTCC1062 3517855 YP_266558.1 CDS glmS NC_007205.1 1105201 1107021 R glutamine-fructose-6-phosphate transaminase (isomerizing) complement(1105201..1107021) Candidatus Pelagibacter ubique HTCC1062 3517856 YP_266559.1 CDS glmU NC_007205.1 1107023 1107646 R UDP-N-acetylglucosamine diphosphorylase complement(1107023..1107646) Candidatus Pelagibacter ubique HTCC1062 3517857 YP_266560.1 CDS gph NC_007205.1 1107717 1108406 D phosphoglycolate phosphatase 1107717..1108406 Candidatus Pelagibacter ubique HTCC1062 3517858 YP_266561.1 CDS prpD NC_007205.1 1108457 1109959 D 2-methylcitrate dehydratase 1108457..1109959 Candidatus Pelagibacter ubique HTCC1062 3517859 YP_266562.1 CDS prpB NC_007205.1 1109959 1110855 D hypothetical protein 1109959..1110855 Candidatus Pelagibacter ubique HTCC1062 3517860 YP_266563.1 CDS prpC NC_007205.1 1110855 1111979 D catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase 1110855..1111979 Candidatus Pelagibacter ubique HTCC1062 3517861 YP_266564.1 CDS SAR11_1157 NC_007205.1 1111980 1112606 R methyltransferase complement(1111980..1112606) Candidatus Pelagibacter ubique HTCC1062 3517862 YP_266565.1 CDS nrdF NC_007205.1 1112611 1113624 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(1112611..1113624) Candidatus Pelagibacter ubique HTCC1062 3517863 YP_266566.1 CDS nrdA NC_007205.1 1113630 1115567 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(1113630..1115567) Candidatus Pelagibacter ubique HTCC1062 3517864 YP_266567.1 CDS manB NC_007205.1 1115724 1117178 D phosphomannomutase 1115724..1117178 Candidatus Pelagibacter ubique HTCC1062 3517865 YP_266568.1 CDS SAR11_1728 NC_007205.1 1117162 1117443 D hypothetical protein 1117162..1117443 Candidatus Pelagibacter ubique HTCC1062 3517866 YP_266569.1 CDS sbcC NC_007205.1 1117612 1118571 R ATPase involved in DNA repair; sbcC complement(1117612..1118571) Candidatus Pelagibacter ubique HTCC1062 3517867 YP_266570.1 CDS SAR11_1162 NC_007205.1 1118568 1119218 R hypothetical protein complement(1118568..1119218) Candidatus Pelagibacter ubique HTCC1062 3517868 YP_266571.1 CDS SAR11_1163 NC_007205.1 1119467 1119844 R hypothetical protein complement(1119467..1119844) Candidatus Pelagibacter ubique HTCC1062 3517869 YP_266572.1 CDS SAR11_1164 NC_007205.1 1119848 1120411 R lipoprotein complement(1119848..1120411) Candidatus Pelagibacter ubique HTCC1062 3517870 YP_266573.1 CDS SAR11_1165 NC_007205.1 1120857 1121216 D exonuclease 1120857..1121216 Candidatus Pelagibacter ubique HTCC1062 3517871 YP_266574.1 CDS SAR11_1166 NC_007205.1 1121220 1121555 R hypothetical protein complement(1121220..1121555) Candidatus Pelagibacter ubique HTCC1062 3517872 YP_266575.1 CDS SAR11_1167 NC_007205.1 1121545 1122273 R hypothetical protein complement(1121545..1122273) Candidatus Pelagibacter ubique HTCC1062 3517873 YP_266576.1 CDS SAR11_1168 NC_007205.1 1122281 1122634 R hypothetical protein complement(1122281..1122634) Candidatus Pelagibacter ubique HTCC1062 3517874 YP_266577.1 CDS SAR11_1169 NC_007205.1 1122717 1123616 R RecB and DNA/RNA helicase; hypothetical protein complement(1122717..1123616) Candidatus Pelagibacter ubique HTCC1062 3517836 YP_266578.1 CDS SAR11_1170 NC_007205.1 1123935 1124120 R hypothetical protein complement(1123935..1124120) Candidatus Pelagibacter ubique HTCC1062 3517837 YP_266579.1 CDS ordL NC_007205.1 1124146 1125489 R oxidoreductase complement(1124146..1125489) Candidatus Pelagibacter ubique HTCC1062 3517838 YP_266580.1 CDS osmC NC_007205.1 1125607 1126158 R OsmC-like protein complement(1125607..1126158) Candidatus Pelagibacter ubique HTCC1062 3517839 YP_266581.1 CDS bhmT NC_007205.1 1126231 1127292 R similar to Oceanobacillus iheyensis HTE831 dbj|BAC12647.1; betaine-homocysteine methyltransferase complement(1126231..1127292) Candidatus Pelagibacter ubique HTCC1062 3517840 YP_266582.1 CDS SAR11_1730 NC_007205.1 1127554 1127718 R hypothetical protein complement(1127554..1127718) Candidatus Pelagibacter ubique HTCC1062 3517841 YP_266583.1 CDS SAR11_1729 NC_007205.1 1127719 1127925 R similar to COG5515: Uncharacterized conserved small protein; hypothetical protein complement(1127719..1127925) Candidatus Pelagibacter ubique HTCC1062 3517842 YP_266584.1 CDS phoB NC_007205.1 1128011 1128691 R phosphate regulatory protein complement(1128011..1128691) Candidatus Pelagibacter ubique HTCC1062 3517843 YP_266585.1 CDS phoU NC_007205.1 1128691 1129389 R phosphate uptake regulatory protein PhoU complement(1128691..1129389) Candidatus Pelagibacter ubique HTCC1062 3517844 YP_266586.1 CDS pstB NC_007205.1 1129392 1130159 R similar to ATP-binding protein Caulobacter crescentus CB15, pstB; phosphate ABC transporter complement(1129392..1130159) Candidatus Pelagibacter ubique HTCC1062 3517845 YP_266587.1 CDS pstA NC_007205.1 1130159 1131418 R ABC transporter complement(1130159..1131418) Candidatus Pelagibacter ubique HTCC1062 3517846 YP_266588.1 CDS pstC NC_007205.1 1131411 1132811 R ABC transporter complement(1131411..1132811) Candidatus Pelagibacter ubique HTCC1062 3517847 YP_266589.1 CDS pstS NC_007205.1 1132929 1133945 R periplasmic phosphate-binding protein PstS; phosphate ABC transporter complement(1132929..1133945) Candidatus Pelagibacter ubique HTCC1062 3517848 YP_266590.1 CDS phoR NC_007205.1 1134061 1135104 R two-component sensor histidine kinase, phoR Mesorhizobium loti; phosphate regulon complement(1134061..1135104) Candidatus Pelagibacter ubique HTCC1062 3517849 YP_266591.1 CDS SAR11_1181 NC_007205.1 1135181 1136146 D similar to Leptospira interrogans serovar lai str. 56601 gb|AAN50992.1; hypothetical protein 1135181..1136146 Candidatus Pelagibacter ubique HTCC1062 3517850 YP_266592.1 CDS SAR11_1731 NC_007205.1 1136254 1136418 R hypothetical protein complement(1136254..1136418) Candidatus Pelagibacter ubique HTCC1062 3517851 YP_266593.1 CDS SAR11_1182 NC_007205.1 1136415 1136597 R hypothetical protein complement(1136415..1136597) Candidatus Pelagibacter ubique HTCC1062 3517852 YP_266594.1 CDS SAR11_1183 NC_007205.1 1136605 1136979 R similar to COG2814: Arabinose efflux permease; hypothetical protein complement(1136605..1136979) Candidatus Pelagibacter ubique HTCC1062 3517853 YP_266595.1 CDS cytC NC_007205.1 1137048 1137476 R cytochrome c complement(1137048..1137476) Candidatus Pelagibacter ubique HTCC1062 3517854 YP_266596.1 CDS SAR11_1185 NC_007205.1 1137555 1138439 D hypothetical protein 1137555..1138439 Candidatus Pelagibacter ubique HTCC1062 3517816 YP_266597.1 CDS SAR11_1186 NC_007205.1 1138454 1138990 R similar to pentapeptide repeats protein from uncultured bacterium 314; hypothetical protein complement(1138454..1138990) Candidatus Pelagibacter ubique HTCC1062 3517817 YP_266598.1 CDS gdhA NC_007205.1 1139061 1140461 R glutamate dehydrogenase complement(1139061..1140461) Candidatus Pelagibacter ubique HTCC1062 3517818 YP_266599.1 CDS SAR11_1188 NC_007205.1 1140479 1140967 R hypothetical protein complement(1140479..1140967) Candidatus Pelagibacter ubique HTCC1062 3517819 YP_266600.1 CDS SAR11_1189 NC_007205.1 1140964 1141257 R hypothetical protein complement(1140964..1141257) Candidatus Pelagibacter ubique HTCC1062 3517820 YP_266601.1 CDS SAR11_1190 NC_007205.1 1141259 1142869 R sulfate permease family protein complement(1141259..1142869) Candidatus Pelagibacter ubique HTCC1062 3517821 YP_266602.1 CDS SAR11_1191 NC_007205.1 1143032 1143436 R HIT domain-containing protein complement(1143032..1143436) Candidatus Pelagibacter ubique HTCC1062 3517822 YP_266603.1 CDS SAR11_1192 NC_007205.1 1143439 1144203 R hypothetical protein complement(1143439..1144203) Candidatus Pelagibacter ubique HTCC1062 3517823 YP_266604.1 CDS SAR11_1193 NC_007205.1 1144265 1145257 R tRNA-dihydrouridine synthase A complement(1144265..1145257) Candidatus Pelagibacter ubique HTCC1062 3517824 YP_266605.1 CDS rpoZ NC_007205.1 1145280 1145822 R DNA-directed RNA polymerase subunit omega complement(1145280..1145822) Candidatus Pelagibacter ubique HTCC1062 3517825 YP_266606.1 CDS SAR11_1195 NC_007205.1 1145866 1147074 R membrane permease complement(1145866..1147074) Candidatus Pelagibacter ubique HTCC1062 3517826 YP_266607.1 CDS mmsB NC_007205.1 1147089 1147955 D 3-hydroxyisobutyrate dehydrogenase 1147089..1147955 Candidatus Pelagibacter ubique HTCC1062 3517827 YP_266608.1 CDS SAR11_1197 NC_007205.1 1147962 1148561 D flavin mononucleotide binding protein 1147962..1148561 Candidatus Pelagibacter ubique HTCC1062 3517828 YP_266609.1 CDS SAR11_1198 NC_007205.1 1148558 1149070 R transferase complement(1148558..1149070) Candidatus Pelagibacter ubique HTCC1062 3517829 YP_266610.1 CDS SAR11_1199 NC_007205.1 1149091 1149645 D similar to Nitrosomonas europaea ATCC 19718 emb|CAD84691.1; hypothetical protein 1149091..1149645 Candidatus Pelagibacter ubique HTCC1062 3517830 YP_266611.1 CDS amsK NC_007205.1 1149702 1150727 D glycosyl transferase family protein 1149702..1150727 Candidatus Pelagibacter ubique HTCC1062 3517831 YP_266612.1 CDS tctA NC_007205.1 1150724 1152226 R tricarboxylic transport protein TctA complement(1150724..1152226) Candidatus Pelagibacter ubique HTCC1062 3517832 YP_266613.1 CDS tctB NC_007205.1 1152223 1152693 R tricarboxylic transport tctB complement(1152223..1152693) Candidatus Pelagibacter ubique HTCC1062 3517833 YP_266614.1 CDS tctC NC_007205.1 1152723 1153703 R tricarboxylic transport protein TctC complement(1152723..1153703) Candidatus Pelagibacter ubique HTCC1062 3517834 YP_266615.1 CDS abrB NC_007205.1 1153904 1155001 D aidB (acyl-CoA) regulator; AbrB family transcriptional regulator 1153904..1155001 Candidatus Pelagibacter ubique HTCC1062 3517835 YP_266616.1 CDS rfaF NC_007205.1 1154993 1155925 R heptosyltransferase family protein complement(1154993..1155925) Candidatus Pelagibacter ubique HTCC1062 3517799 YP_266617.1 CDS SAR11_1207 NC_007205.1 1155958 1156347 D hypothetical protein 1155958..1156347 Candidatus Pelagibacter ubique HTCC1062 3517800 YP_266618.1 CDS oocM NC_007205.1 1156341 1157015 R octopine-like transport system permease protein oocM complement(1156341..1157015) Candidatus Pelagibacter ubique HTCC1062 3517801 YP_266619.1 CDS occQ NC_007205.1 1157015 1157707 R permease protein; ABC transporter complement(1157015..1157707) Candidatus Pelagibacter ubique HTCC1062 3517802 YP_266620.1 CDS occT NC_007205.1 1157753 1158604 R periplasmic amino acid-binding protein; ABC transporter complement(1157753..1158604) Candidatus Pelagibacter ubique HTCC1062 3517803 YP_266621.1 CDS speE NC_007205.1 1158666 1159706 R spermine/spermidine synthase complement(1158666..1159706) Candidatus Pelagibacter ubique HTCC1062 3517804 YP_266622.1 CDS pfs NC_007205.1 1159819 1160343 R 5'-methylthioadenosine nucleosidase complement(1159819..1160343) Candidatus Pelagibacter ubique HTCC1062 3517805 YP_266623.1 CDS apt NC_007205.1 1160381 1160908 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1160381..1160908 Candidatus Pelagibacter ubique HTCC1062 3517806 YP_266624.1 CDS SAR11_1214 NC_007205.1 1160941 1162149 D hypothetical protein 1160941..1162149 Candidatus Pelagibacter ubique HTCC1062 3517807 YP_266625.1 CDS SAR11_1215 NC_007205.1 1162229 1163071 R sulfotransferase domain-containing protein complement(1162229..1163071) Candidatus Pelagibacter ubique HTCC1062 3517808 YP_266626.1 CDS ecpD NC_007205.1 1163669 1164238 D fimbrial protein pilin 1163669..1164238 Candidatus Pelagibacter ubique HTCC1062 3517810 YP_266627.1 CDS glbN NC_007205.1 1164385 1164786 D globin family protein 1164385..1164786 Candidatus Pelagibacter ubique HTCC1062 3517811 YP_266628.1 CDS sigB NC_007205.1 1164991 1165692 D sigma factor SigB regulation protein 1164991..1165692 Candidatus Pelagibacter ubique HTCC1062 3517812 YP_266629.1 CDS SAR11_1219 NC_007205.1 1165696 1166454 D fimbrial protein pilin 1165696..1166454 Candidatus Pelagibacter ubique HTCC1062 3517813 YP_266630.1 CDS SAR11_1220 NC_007205.1 1166737 1166964 R hypothetical protein complement(1166737..1166964) Candidatus Pelagibacter ubique HTCC1062 3517815 YP_266631.1 CDS SAR11_1221 NC_007205.1 1167006 1169450 R sarcosine dehydrogenase complement(1167006..1169450) Candidatus Pelagibacter ubique HTCC1062 3517779 YP_266632.1 CDS cycA NC_007205.1 1169497 1169940 R cytochrome c' complement(1169497..1169940) Candidatus Pelagibacter ubique HTCC1062 3517780 YP_266633.1 CDS SAR11_1223 NC_007205.1 1169944 1170486 D cytochrome b561 family protein 1169944..1170486 Candidatus Pelagibacter ubique HTCC1062 3517781 YP_266634.1 CDS SAR11_1225 NC_007205.1 1170490 1171194 R similar to Sinorhizobium meliloti pir||E95408; hypothetical protein complement(1170490..1171194) Candidatus Pelagibacter ubique HTCC1062 3517782 YP_266635.1 CDS SAR11_1226 NC_007205.1 1171170 1171739 R methyltransferase complement(1171170..1171739) Candidatus Pelagibacter ubique HTCC1062 3517783 YP_266636.1 CDS SAR11_1227 NC_007205.1 1171935 1172888 D ADP-ribosylglycohydrolase 1171935..1172888 Candidatus Pelagibacter ubique HTCC1062 3517784 YP_266637.1 CDS dinF NC_007205.1 1172889 1174208 D DNA-damage inducible protein F 1172889..1174208 Candidatus Pelagibacter ubique HTCC1062 3517785 YP_266638.1 CDS SAR11_1229 NC_007205.1 1174245 1175258 D glyoxalase II; hydroxyacylglutathione hydrolase 1174245..1175258 Candidatus Pelagibacter ubique HTCC1062 3517786 YP_266639.1 CDS SAR11_1230 NC_007205.1 1175268 1175693 R hypothetical protein complement(1175268..1175693) Candidatus Pelagibacter ubique HTCC1062 3517787 YP_266640.1 CDS SAR11_1231 NC_007205.1 1175833 1176201 R thioredoxin complement(1175833..1176201) Candidatus Pelagibacter ubique HTCC1062 3517788 YP_266641.1 CDS SAR11_1232 NC_007205.1 1176246 1177139 R hypothetical protein complement(1176246..1177139) Candidatus Pelagibacter ubique HTCC1062 3517789 YP_266642.1 CDS SAR11_1233 NC_007205.1 1177163 1177438 R hypothetical protein complement(1177163..1177438) Candidatus Pelagibacter ubique HTCC1062 3517790 YP_266643.1 CDS azlC NC_007205.1 1177480 1178178 R AzlC protein complement(1177480..1178178) Candidatus Pelagibacter ubique HTCC1062 3517791 YP_266644.1 CDS sfuA NC_007205.1 1178198 1179256 R similar to ATP-binding protein Vibrio vulnificus YJ016 dbj|BAC95508.1; iron(III) ABC transporter complement(1178198..1179256) Candidatus Pelagibacter ubique HTCC1062 3517792 YP_266645.1 CDS sfuB NC_007205.1 1179261 1180877 R similar to permease protein VC0609 Vibrio cholerae; iron(III) ABC transporter complement(1179261..1180877) Candidatus Pelagibacter ubique HTCC1062 3517793 YP_266646.1 CDS sfuC NC_007205.1 1180952 1181971 R iron-uptake ABC transport system periplasmic iron-binding protein complement(1180952..1181971) Candidatus Pelagibacter ubique HTCC1062 3517794 YP_266647.1 CDS SAR11_1239 NC_007205.1 1182072 1182365 R hypothetical protein complement(1182072..1182365) Candidatus Pelagibacter ubique HTCC1062 3517795 YP_266648.1 CDS aceA NC_007205.1 1182407 1183681 R isocitrate lyase complement(1182407..1183681) Candidatus Pelagibacter ubique HTCC1062 3517796 YP_266649.1 CDS SAR11_1241 NC_007205.1 1183727 1183888 R hypothetical protein complement(1183727..1183888) Candidatus Pelagibacter ubique HTCC1062 3517797 YP_266650.1 CDS SAR11_1242 NC_007205.1 1184000 1185433 D transcriptional regulator 1184000..1185433 Candidatus Pelagibacter ubique HTCC1062 3517798 YP_266651.1 CDS SAR11_1243 NC_007205.1 1185434 1186324 R transcriptional regulator complement(1185434..1186324) Candidatus Pelagibacter ubique HTCC1062 3517760 YP_266652.1 CDS yhdH NC_007205.1 1186325 1187326 R zinc-binding alcohol dehydrogenase complement(1186325..1187326) Candidatus Pelagibacter ubique HTCC1062 3517761 YP_266653.1 CDS folE NC_007205.1 1187347 1187955 R GTP cyclohydrolase I complement(1187347..1187955) Candidatus Pelagibacter ubique HTCC1062 3517762 YP_266654.1 CDS hisI NC_007205.1 1188012 1188500 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 1188012..1188500 Candidatus Pelagibacter ubique HTCC1062 3517763 YP_266655.1 CDS SAR11_1247 NC_007205.1 1188501 1188875 D similar to COG3651: Uncharacterized protein conserved in bacteria; hypothetical protein 1188501..1188875 Candidatus Pelagibacter ubique HTCC1062 3517764 YP_266656.1 CDS SAR11_1248 NC_007205.1 1188881 1189852 R hypothetical protein complement(1188881..1189852) Candidatus Pelagibacter ubique HTCC1062 3517765 YP_266657.1 CDS SAR11_1249 NC_007205.1 1189957 1190175 D hypothetical protein 1189957..1190175 Candidatus Pelagibacter ubique HTCC1062 3517766 YP_266658.1 CDS SAR11_1250 NC_007205.1 1190176 1191780 R electron transfer flavoprotein-ubiquinone oxidoreductase complement(1190176..1191780) Candidatus Pelagibacter ubique HTCC1062 3517767 YP_266659.1 CDS etfA NC_007205.1 1191819 1192772 R electron transfer flavoprotein subunit alpha complement(1191819..1192772) Candidatus Pelagibacter ubique HTCC1062 3517768 YP_266660.1 CDS etfB NC_007205.1 1192772 1193521 R electron transfer flavoprotein subunit beta complement(1192772..1193521) Candidatus Pelagibacter ubique HTCC1062 3517769 YP_266661.1 CDS SAR11_1253 NC_007205.1 1193521 1195953 R similar to mitochondrial precursor (me2glydh) - Agrobacterium tumefaciens; dimethylglycine dehydrogenase complement(1193521..1195953) Candidatus Pelagibacter ubique HTCC1062 3517770 YP_266662.1 CDS SAR11_1254 NC_007205.1 1196013 1196492 R hypothetical protein complement(1196013..1196492) Candidatus Pelagibacter ubique HTCC1062 3517771 YP_266663.1 CDS SAR11_1255 NC_007205.1 1196458 1197027 R similar to YabF family Clostridium acetobutylicum pir||B96902 probable NADP; NADPH-quinone reductase complement(1196458..1197027) Candidatus Pelagibacter ubique HTCC1062 3517772 YP_266664.1 CDS SAR11_1256 NC_007205.1 1197066 1197263 D hypothetical protein 1197066..1197263 Candidatus Pelagibacter ubique HTCC1062 3517773 YP_266665.1 CDS SAR11_1257 NC_007205.1 1197221 1197643 R similar to COG2391: Predicted transporter component; hypothetical protein complement(1197221..1197643) Candidatus Pelagibacter ubique HTCC1062 3517774 YP_266666.1 CDS yeeE NC_007205.1 1197640 1198059 R hypothetical protein complement(1197640..1198059) Candidatus Pelagibacter ubique HTCC1062 3517775 YP_266667.1 CDS met17 NC_007205.1 1198060 1198497 R hypothetical protein complement(1198060..1198497) Candidatus Pelagibacter ubique HTCC1062 3517776 YP_266668.1 CDS ydbS NC_007205.1 1198497 1199282 R enoyl-CoA hydratase complement(1198497..1199282) Candidatus Pelagibacter ubique HTCC1062 3517777 YP_266669.1 CDS SAR11_1261 NC_007205.1 1199266 1199640 R cytidylyltransferase complement(1199266..1199640) Candidatus Pelagibacter ubique HTCC1062 3517778 YP_266670.1 CDS cysC NC_007205.1 1199640 1200047 R adenylylsulfate kinase complement(1199640..1200047) Candidatus Pelagibacter ubique HTCC1062 3516790 YP_266671.1 CDS SAR11_1263 NC_007205.1 1200049 1201242 R dioxygenase subunit alpha complement(1200049..1201242) Candidatus Pelagibacter ubique HTCC1062 3516791 YP_266672.1 CDS metF NC_007205.1 1201343 1202071 D methylenetetrahydrofolate reductase 1201343..1202071 Candidatus Pelagibacter ubique HTCC1062 3516792 YP_266673.1 CDS SAR11_1265 NC_007205.1 1202064 1203422 D glycine cleavage system protein T 1202064..1203422 Candidatus Pelagibacter ubique HTCC1062 3516793 YP_266674.1 CDS SAR11_1266 NC_007205.1 1203572 1204117 D hypothetical protein 1203572..1204117 Candidatus Pelagibacter ubique HTCC1062 3516794 YP_266675.1 CDS SAR11_1267 NC_007205.1 1204114 1204284 R hypothetical protein complement(1204114..1204284) Candidatus Pelagibacter ubique HTCC1062 3516795 YP_266676.1 CDS SAR11_1268 NC_007205.1 1204277 1204888 R hypothetical protein complement(1204277..1204888) Candidatus Pelagibacter ubique HTCC1062 3516796 YP_266677.1 CDS SAR11_1269 NC_007205.1 1204894 1206546 R similar to Pseudomonas putida KT2440 gb|AAN68299.1; hypothetical protein complement(1204894..1206546) Candidatus Pelagibacter ubique HTCC1062 3516797 YP_266678.1 CDS SAR11_1270 NC_007205.1 1206543 1207514 R dipeptidase complement(1206543..1207514) Candidatus Pelagibacter ubique HTCC1062 3516798 YP_266679.1 CDS SAR11_1271 NC_007205.1 1207629 1208120 D phosphoribosylaminoimidazole carboxylase catalytic chain 1207629..1208120 Candidatus Pelagibacter ubique HTCC1062 3516799 YP_266680.1 CDS purE NC_007205.1 1208130 1209176 D phosphoribosylaminoimidazole carboxylase ATPase chain 1208130..1209176 Candidatus Pelagibacter ubique HTCC1062 3516800 YP_266681.1 CDS SAR11_1273 NC_007205.1 1209188 1209655 D acetyltransferase 1209188..1209655 Candidatus Pelagibacter ubique HTCC1062 3516801 YP_266682.1 CDS cspL NC_007205.1 1209774 1209980 D cold shock DNA-binding domain-containing protein 1209774..1209980 Candidatus Pelagibacter ubique HTCC1062 3516802 YP_266683.1 CDS SAR11_1275 NC_007205.1 1210062 1210796 R alpha/beta hydrolase complement(1210062..1210796) Candidatus Pelagibacter ubique HTCC1062 3516803 YP_266684.1 CDS SAR11_1276 NC_007205.1 1210949 1211227 D hypothetical protein 1210949..1211227 Candidatus Pelagibacter ubique HTCC1062 3516804 YP_266685.1 CDS racX NC_007205.1 1211265 1212011 D similar to Swiss-Prot Accession Number P29079; aspartate racemase 1211265..1212011 Candidatus Pelagibacter ubique HTCC1062 3516805 YP_266686.1 CDS SAR11_1278 NC_007205.1 1212015 1212455 D hypothetical protein 1212015..1212455 Candidatus Pelagibacter ubique HTCC1062 3516806 YP_266687.1 CDS SAR11_1279 NC_007205.1 1212445 1212756 R hypothetical protein complement(1212445..1212756) Candidatus Pelagibacter ubique HTCC1062 3516807 YP_266688.1 CDS SAR11_1280 NC_007205.1 1212866 1213717 D similar to probable integral membrane protein Mesorhizobium loti dbj|BAB50359.1; hypothetical protein 1212866..1213717 Candidatus Pelagibacter ubique HTCC1062 3516808 YP_266689.1 CDS soxG2 NC_007205.1 1213722 1214309 R gamma subunit family; sarcosine oxidase complement(1213722..1214309) Candidatus Pelagibacter ubique HTCC1062 3516809 YP_266690.1 CDS soxA2 NC_007205.1 1214306 1217302 R sarcosine oxidase subunit alpha complement(1214306..1217302) Candidatus Pelagibacter ubique HTCC1062 3517319 YP_266691.1 CDS soxD2 NC_007205.1 1217304 1217570 R sarcosine oxidase subunit delta complement(1217304..1217570) Candidatus Pelagibacter ubique HTCC1062 3517320 YP_266692.1 CDS soxB2 NC_007205.1 1217571 1218827 R sarcosine oxidase subunit beta complement(1217571..1218827) Candidatus Pelagibacter ubique HTCC1062 3517321 YP_266693.1 CDS fhs NC_007205.1 1218954 1220639 D formate-tetrahydrofolate ligase 1218954..1220639 Candidatus Pelagibacter ubique HTCC1062 3517322 YP_266694.1 CDS SAR11_1286 NC_007205.1 1220643 1221434 R glutamine amidotransferase complement(1220643..1221434) Candidatus Pelagibacter ubique HTCC1062 3517323 YP_266695.1 CDS SAR11_1287 NC_007205.1 1221431 1222597 R iron-containing alcohol dehydrogenase complement(1221431..1222597) Candidatus Pelagibacter ubique HTCC1062 3517324 YP_266696.1 CDS ssdH NC_007205.1 1222669 1224045 D aldehyde dehydrogenase 1222669..1224045 Candidatus Pelagibacter ubique HTCC1062 3517325 YP_266697.1 CDS SAR11_1289 NC_007205.1 1224047 1224802 D short chain dehydrogenase 1224047..1224802 Candidatus Pelagibacter ubique HTCC1062 3517326 YP_266698.1 CDS SAR11_1290 NC_007205.1 1224850 1225926 R similar to COG4663: TRAP-type mannitol/chloroaromatic compound transport system; TRAP-type extracellular solute-binding protein complement(1224850..1225926) Candidatus Pelagibacter ubique HTCC1062 3517327 YP_266699.1 CDS dctM NC_007205.1 1226064 1227395 R TrapT family, dctM subunit; TrapT family protein complement(1226064..1227395) Candidatus Pelagibacter ubique HTCC1062 3517328 YP_266700.1 CDS dctQ NC_007205.1 1227395 1227904 R tripartite ATP-independent periplasmic complement(1227395..1227904) Candidatus Pelagibacter ubique HTCC1062 3517329 YP_266701.1 CDS SAR11_1294 NC_007205.1 1227911 1228105 R hypothetical protein complement(1227911..1228105) Candidatus Pelagibacter ubique HTCC1062 3517330 YP_266702.1 CDS gpsA NC_007205.1 1228099 1229127 R glycerol-3-phosphate dehydrogenase complement(1228099..1229127) Candidatus Pelagibacter ubique HTCC1062 3517331 YP_266703.1 CDS SAR11_1296 NC_007205.1 1229207 1230538 D flavin-containing monooxygenase 1229207..1230538 Candidatus Pelagibacter ubique HTCC1062 3517332 YP_266704.1 CDS opuAB NC_007205.1 1230571 1232724 R glycine betaine/L-proline transport system permease complement(1230571..1232724) Candidatus Pelagibacter ubique HTCC1062 3517333 YP_266705.1 CDS opuAA NC_007205.1 1232734 1233759 R glycine betaine/l-proline transport ATP-binding protein complement(1232734..1233759) Candidatus Pelagibacter ubique HTCC1062 3517334 YP_266706.1 CDS SAR11_1299 NC_007205.1 1233832 1234380 R hypothetical protein complement(1233832..1234380) Candidatus Pelagibacter ubique HTCC1062 3517335 YP_266707.1 CDS SAR11_1300 NC_007205.1 1234392 1234769 R MORN repeat-containing protein complement(1234392..1234769) Candidatus Pelagibacter ubique HTCC1062 3517336 YP_266708.1 CDS SAR11_1301 NC_007205.1 1234804 1235283 R hypothetical protein complement(1234804..1235283) Candidatus Pelagibacter ubique HTCC1062 3517337 YP_266709.1 CDS opuAC NC_007205.1 1235374 1236318 R substrate-binding region of ABC-type glycine betaine transport system complement(1235374..1236318) Candidatus Pelagibacter ubique HTCC1062 3517489 YP_266710.1 CDS SAR11_1303 NC_007205.1 1236434 1238761 D glycine cleavage system protein T 1236434..1238761 Candidatus Pelagibacter ubique HTCC1062 3517490 YP_266711.1 CDS rpl6e NC_007205.1 1238765 1239115 D 50S ribosomal protein L6 1238765..1239115 Candidatus Pelagibacter ubique HTCC1062 3517491 YP_266712.1 CDS SAR11_1304 NC_007205.1 1239215 1240543 D monomeric sarcosine oxidase 1239215..1240543 Candidatus Pelagibacter ubique HTCC1062 3517492 YP_266713.1 CDS SAR11_1305 NC_007205.1 1240616 1242085 D GlnT-like protein 1240616..1242085 Candidatus Pelagibacter ubique HTCC1062 3517493 YP_266714.1 CDS SAR11_1306 NC_007205.1 1242110 1243054 D glutamine amidotransferase-like protein 1242110..1243054 Candidatus Pelagibacter ubique HTCC1062 3517494 YP_266715.1 CDS SAR11_1307 NC_007205.1 1243042 1243896 D GXGXG motif-containing protein 1243042..1243896 Candidatus Pelagibacter ubique HTCC1062 3517495 YP_266716.1 CDS SAR11_1308 NC_007205.1 1243896 1245320 D GlxD-like protein; glutamate synthase large subunit-like protein 1243896..1245320 Candidatus Pelagibacter ubique HTCC1062 3517496 YP_266717.1 CDS SAR11_1309 NC_007205.1 1245330 1245731 D hypothetical protein 1245330..1245731 Candidatus Pelagibacter ubique HTCC1062 3517497 YP_266718.1 CDS amt NC_007205.1 1245857 1247257 D ammonium transporter 1245857..1247257 Candidatus Pelagibacter ubique HTCC1062 3517498 YP_266719.1 CDS SAR11_1311 NC_007205.1 1247269 1247493 D hypothetical protein 1247269..1247493 Candidatus Pelagibacter ubique HTCC1062 3517499 YP_266720.1 CDS SAR11_1312 NC_007205.1 1247554 1247706 D hypothetical protein 1247554..1247706 Candidatus Pelagibacter ubique HTCC1062 3517500 YP_266721.1 CDS glxB NC_007205.1 1247719 1248597 D glutamine amidotransferase-like protein glxB 1247719..1248597 Candidatus Pelagibacter ubique HTCC1062 3517501 YP_266722.1 CDS glxC NC_007205.1 1248601 1249281 D GXGXG motif; GlxC protein 1248601..1249281 Candidatus Pelagibacter ubique HTCC1062 3517502 YP_266723.1 CDS glxD NC_007205.1 1249284 1250600 D glutamate synthase large subunit 1249284..1250600 Candidatus Pelagibacter ubique HTCC1062 3517503 YP_266724.1 CDS glnT NC_007205.1 1250644 1251969 D glutamine synthetase 1250644..1251969 Candidatus Pelagibacter ubique HTCC1062 3517504 YP_266725.1 CDS ygeX NC_007205.1 1251973 1253115 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 1251973..1253115 Candidatus Pelagibacter ubique HTCC1062 3517505 YP_266726.1 CDS phrB NC_007205.1 1253122 1254543 D deoxyribodipyrimidine photo-lyase 1253122..1254543 Candidatus Pelagibacter ubique HTCC1062 3517506 YP_266727.1 CDS SAR11_1319 NC_007205.1 1254540 1254959 R hypothetical protein complement(1254540..1254959) Candidatus Pelagibacter ubique HTCC1062 3517507 YP_266728.1 CDS SAR11_1320 NC_007205.1 1254956 1255816 R AFG1-like ATPase complement(1254956..1255816) Candidatus Pelagibacter ubique HTCC1062 3517508 YP_266729.1 CDS SAR11_1321 NC_007205.1 1256001 1256438 R hypothetical protein complement(1256001..1256438) Candidatus Pelagibacter ubique HTCC1062 3517509 YP_266730.1 CDS SAR11_1322 NC_007205.1 1256441 1257742 R PQQ repeat-containing protein complement(1256441..1257742) Candidatus Pelagibacter ubique HTCC1062 3517510 YP_266731.1 CDS SAR11_1323 NC_007205.1 1257732 1258376 R hypothetical protein complement(1257732..1258376) Candidatus Pelagibacter ubique HTCC1062 3517511 YP_266732.1 CDS acnA NC_007205.1 1258379 1261048 R aconitate hydratase complement(1258379..1261048) Candidatus Pelagibacter ubique HTCC1062 3517512 YP_266733.1 CDS yfiK NC_007205.1 1261054 1261641 R LysE family; transporter complement(1261054..1261641) Candidatus Pelagibacter ubique HTCC1062 3517513 YP_266734.1 CDS csaA NC_007205.1 1261647 1261988 R CsaA protein complement(1261647..1261988) Candidatus Pelagibacter ubique HTCC1062 3517514 YP_266735.1 CDS argE NC_007205.1 1262016 1263206 D acetylornithine deacetylase 1262016..1263206 Candidatus Pelagibacter ubique HTCC1062 3517515 YP_266736.1 CDS SAR11_1328 NC_007205.1 1263228 1264664 R aldehyde dehydrogenase complement(1263228..1264664) Candidatus Pelagibacter ubique HTCC1062 3517516 YP_266737.1 CDS speB NC_007205.1 1264679 1265644 R agmatinase complement(1264679..1265644) Candidatus Pelagibacter ubique HTCC1062 3517517 YP_266738.1 CDS SAR11_1330 NC_007205.1 1265702 1266439 D lipoprotein 1265702..1266439 Candidatus Pelagibacter ubique HTCC1062 3517518 YP_266739.1 CDS ppiA NC_007205.1 1266439 1267083 D peptidylprolyl cis-trans isomerase 1266439..1267083 Candidatus Pelagibacter ubique HTCC1062 3517519 YP_266740.1 CDS SAR11_1332 NC_007205.1 1267165 1268373 D hypothetical protein 1267165..1268373 Candidatus Pelagibacter ubique HTCC1062 3517520 YP_266741.1 CDS fadB NC_007205.1 1268370 1270592 R 3-hydroxyacyl-CoA dehydrogenase complement(1268370..1270592) Candidatus Pelagibacter ubique HTCC1062 3517521 YP_266742.1 CDS potC NC_007205.1 1270649 1271503 R spermidine/putrescine transport system permease protein potc complement(1270649..1271503) Candidatus Pelagibacter ubique HTCC1062 3517522 YP_266743.1 CDS potB NC_007205.1 1271507 1272754 R spermidine/putrescine transport system permease protein potb complement(1271507..1272754) Candidatus Pelagibacter ubique HTCC1062 3517523 YP_266744.1 CDS potD NC_007205.1 1272839 1273960 R spermidine/putrescine-binding periplasmic protein complement(1272839..1273960) Candidatus Pelagibacter ubique HTCC1062 3517524 YP_266745.1 CDS potA NC_007205.1 1274095 1275183 R spermidine/putrescine transport ATP-binding protein pota complement(1274095..1275183) Candidatus Pelagibacter ubique HTCC1062 3517525 YP_266746.1 CDS y4tM NC_007205.1 1275242 1276408 R X-Pro dipeptidase complement(1275242..1276408) Candidatus Pelagibacter ubique HTCC1062 3517526 YP_266747.1 CDS SAR11_1339 NC_007205.1 1276409 1277155 R racemase complement(1276409..1277155) Candidatus Pelagibacter ubique HTCC1062 3517527 YP_266748.1 CDS SAR11_1340 NC_007205.1 1277497 1278489 D luciferase-like monooxygenase 1277497..1278489 Candidatus Pelagibacter ubique HTCC1062 3517038 YP_266749.1 CDS SAR11_1341 NC_007205.1 1278489 1279076 D hypothetical protein 1278489..1279076 Candidatus Pelagibacter ubique HTCC1062 3517039 YP_266750.1 CDS SAR11_1342 NC_007205.1 1279081 1279863 D alpha/beta hydrolase 1279081..1279863 Candidatus Pelagibacter ubique HTCC1062 3517040 YP_266751.1 CDS dhaS NC_007205.1 1279864 1281345 D betaine-aldehyde dehydrogenase 1279864..1281345 Candidatus Pelagibacter ubique HTCC1062 3517041 YP_266752.1 CDS SAR11_1344 NC_007205.1 1281350 1282207 D hypothetical protein 1281350..1282207 Candidatus Pelagibacter ubique HTCC1062 3517042 YP_266753.1 CDS livJ NC_007205.1 1282283 1283467 D similar to COG0683: ABC-type branched-chain amino acid transport systems, periplasmic component; hypothetical protein 1282283..1283467 Candidatus Pelagibacter ubique HTCC1062 3517043 YP_266754.1 CDS SAR11_1347 NC_007205.1 1283524 1284285 R similar to COG0730: Predicted permeases; hypothetical protein complement(1283524..1284285) Candidatus Pelagibacter ubique HTCC1062 3517044 YP_266755.1 CDS SAR11_1348 NC_007205.1 1284287 1285450 R hypothetical protein complement(1284287..1285450) Candidatus Pelagibacter ubique HTCC1062 3517045 YP_266756.1 CDS livM NC_007205.1 1285527 1286858 R branched chain amino acid ABC transporter permease complement(1285527..1286858) Candidatus Pelagibacter ubique HTCC1062 3517046 YP_266757.1 CDS livH NC_007205.1 1286894 1287904 R branched chain amino acid ABC transporter permease complement(1286894..1287904) Candidatus Pelagibacter ubique HTCC1062 3517047 YP_266758.1 CDS livF NC_007205.1 1287906 1288613 R branched-chain amino acid ABC transporter ATP-binding protein complement(1287906..1288613) Candidatus Pelagibacter ubique HTCC1062 3517048 YP_266759.1 CDS livG NC_007205.1 1288613 1289407 R ABC transporter ATP-binding protein complement(1288613..1289407) Candidatus Pelagibacter ubique HTCC1062 3517049 YP_266760.1 CDS SAR11_1353 NC_007205.1 1289413 1290180 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(1289413..1290180) Candidatus Pelagibacter ubique HTCC1062 3517050 YP_266761.1 CDS gab NC_007205.1 1290213 1291124 R in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein complement(1290213..1291124) Candidatus Pelagibacter ubique HTCC1062 3517051 YP_266762.1 CDS SAR11_1355 NC_007205.1 1291124 1291447 R hypothetical protein complement(1291124..1291447) Candidatus Pelagibacter ubique HTCC1062 3517052 YP_266763.1 CDS SAR11_1356 NC_007205.1 1291437 1292141 R hypothetical protein complement(1291437..1292141) Candidatus Pelagibacter ubique HTCC1062 3517053 YP_266764.2 CDS livF2 NC_007205.1 1292141 1292926 R branched-chain amino acid ABC transporter ATP-binding protein complement(1292141..1292926) Candidatus Pelagibacter ubique HTCC1062 3517054 YP_266765.1 CDS livG2 NC_007205.1 1292926 1293666 R ABC transporter ATP-binding protein complement(1292926..1293666) Candidatus Pelagibacter ubique HTCC1062 3517055 YP_266766.1 CDS livM2 NC_007205.1 1293666 1294694 R high-affinity branched-chain amino acid transport permease complement(1293666..1294694) Candidatus Pelagibacter ubique HTCC1062 3517056 YP_266767.1 CDS livH2 NC_007205.1 1294718 1295578 R high-affinity branched-chain amino acid transport permease complement(1294718..1295578) Candidatus Pelagibacter ubique HTCC1062 3517057 YP_266768.1 CDS livJ2 NC_007205.1 1295676 1296917 R Leu/Ile/Val-binding protein precursor complement(1295676..1296917) Candidatus Pelagibacter ubique HTCC1062 3517459 YP_266769.1 CDS rhtB NC_007205.1 1297008 1297622 R possible threonine efflux pump; LysE type translocator complement(1297008..1297622) Candidatus Pelagibacter ubique HTCC1062 3517460 YP_266770.1 CDS SAR11_1363 NC_007205.1 1297756 1298052 D hypothetical protein 1297756..1298052 Candidatus Pelagibacter ubique HTCC1062 3517461 YP_266771.1 CDS SAR11_1364 NC_007205.1 1298056 1298310 D glutaredoxin 1298056..1298310 Candidatus Pelagibacter ubique HTCC1062 3517462 YP_266772.1 CDS SAR11_1365 NC_007205.1 1298312 1298686 R SelR domain-containing protein complement(1298312..1298686) Candidatus Pelagibacter ubique HTCC1062 3517463 YP_266773.1 CDS serA NC_007205.1 1298690 1299640 R phosphoglycerate dehydrogenase complement(1298690..1299640) Candidatus Pelagibacter ubique HTCC1062 3517464 YP_266774.1 CDS SAR11_1367 NC_007205.1 1299633 1300532 R transporter complement(1299633..1300532) Candidatus Pelagibacter ubique HTCC1062 3517465 YP_266775.1 CDS dadA NC_007205.1 1300533 1301774 R D-amino-acid dehydrogenase complement(1300533..1301774) Candidatus Pelagibacter ubique HTCC1062 3517466 YP_266776.1 CDS rodA NC_007205.1 1301843 1302964 R rod shape-determining protein RodA complement(1301843..1302964) Candidatus Pelagibacter ubique HTCC1062 3517467 YP_266777.1 CDS pbpA NC_007205.1 1302965 1304932 R penicillin binding protein transpeptide complement(1302965..1304932) Candidatus Pelagibacter ubique HTCC1062 3517468 YP_266778.1 CDS mreD NC_007205.1 1304922 1305443 R rod shape-determining protein MreD complement(1304922..1305443) Candidatus Pelagibacter ubique HTCC1062 3517469 YP_266779.1 CDS mreC NC_007205.1 1305440 1306090 R rod shape-determining protein MreC complement(1305440..1306090) Candidatus Pelagibacter ubique HTCC1062 3517470 YP_266780.1 CDS mreB NC_007205.1 1306297 1307334 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(1306297..1307334) Candidatus Pelagibacter ubique HTCC1062 3517471 YP_266781.1 CDS leuA NC_007205.1 1307340 1308584 R 2-isopropylmalate synthase complement(1307340..1308584) Candidatus Pelagibacter ubique HTCC1062 3517472 YP_266782.1 CDS SAR11_1375 NC_007205.1 1308630 1308719 D hypothetical protein 1308630..1308719 Candidatus Pelagibacter ubique HTCC1062 3517473 SAR11_tRNA_r_31 tRNA SAR11_tRNA_r_31 NC_007205.1 41674 41750 D tRNA-Met 41674..41750 Candidatus Pelagibacter ubique HTCC1062 3516667 SAR11_tRNA_r_30 tRNA SAR11_tRNA_r_30 NC_007205.1 41817 41891 D tRNA-Val 41817..41891 Candidatus Pelagibacter ubique HTCC1062 3516668 SAR11_tRNA_r_29 tRNA SAR11_tRNA_r_29 NC_007205.1 116151 116224 D tRNA-Gln 116151..116224 Candidatus Pelagibacter ubique HTCC1062 3516756 SAR11_tRNA_r_28 tRNA SAR11_tRNA_r_28 NC_007205.1 319571 319645 D tRNA-Gly 319571..319645 Candidatus Pelagibacter ubique HTCC1062 3517652 SAR11_tRNA_f_0 tRNA SAR11_tRNA_f_0 NC_007205.1 408517 408601 D tRNA-Leu 408517..408601 Candidatus Pelagibacter ubique HTCC1062 3517752 SAR11_tRNA_r_27 tRNA SAR11_tRNA_r_27 NC_007205.1 415434 415510 D tRNA-Arg 415434..415510 Candidatus Pelagibacter ubique HTCC1062 3517759 SAR11_tRNA_f_1 tRNA SAR11_tRNA_f_1 NC_007205.1 440216 440305 D tRNA-Ser 440216..440305 Candidatus Pelagibacter ubique HTCC1062 3517279 SAR11_tRNA_r_26 tRNA SAR11_tRNA_r_26 NC_007205.1 462365 462438 D tRNA-Thr 462365..462438 Candidatus Pelagibacter ubique HTCC1062 3517232 SAR11_tRNA_f_2 tRNA SAR11_tRNA_f_2 NC_007205.1 466556 466631 D tRNA-Phe 466556..466631 Candidatus Pelagibacter ubique HTCC1062 3517240 SAR11_tRNA_f_3 tRNA SAR11_tRNA_f_3 NC_007205.1 467168 467242 D tRNA-His 467168..467242 Candidatus Pelagibacter ubique HTCC1062 3517242 SAR11_tRNA_f_4 tRNA SAR11_tRNA_f_4 NC_007205.1 512931 513007 D tRNA-Ile 512931..513007 Candidatus Pelagibacter ubique HTCC1062 3517178 SAR11_tRNA_f_5 tRNA SAR11_tRNA_f_5 NC_007205.1 513017 513092 D tRNA-Ala 513017..513092 Candidatus Pelagibacter ubique HTCC1062 3517179 SAR11_tRNA_r_25 tRNA SAR11_tRNA_r_25 NC_007205.1 568432 568508 D tRNA-Met 568432..568508 Candidatus Pelagibacter ubique HTCC1062 3517126 SAR11_tRNA_f_6 tRNA SAR11_tRNA_f_6 NC_007205.1 594400 594476 D tRNA-Arg 594400..594476 Candidatus Pelagibacter ubique HTCC1062 3517082 SAR11_tRNA_f_7 tRNA SAR11_tRNA_f_7 NC_007205.1 843125 843209 D tRNA-Leu 843125..843209 Candidatus Pelagibacter ubique HTCC1062 3517037 SAR11_tRNA_f_8 tRNA SAR11_tRNA_f_8 NC_007205.1 849156 849231 D tRNA-Val 849156..849231 Candidatus Pelagibacter ubique HTCC1062 3517007 SAR11_tRNA_f_9 tRNA SAR11_tRNA_f_9 NC_007205.1 849245 849321 D tRNA-Asp 849245..849321 Candidatus Pelagibacter ubique HTCC1062 3517008 SAR11_tRNA_f_10 tRNA SAR11_tRNA_f_10 NC_007205.1 936095 936171 D tRNA-Arg 936095..936171 Candidatus Pelagibacter ubique HTCC1062 3516961 SAR11_tRNA_r_24 tRNA SAR11_tRNA_r_24 NC_007205.1 942409 942484 D tRNA-Asn 942409..942484 Candidatus Pelagibacter ubique HTCC1062 3516565 SAR11_tRNA_r_23 tRNA SAR11_tRNA_r_23 NC_007205.1 942537 942610 D tRNA-Cys 942537..942610 Candidatus Pelagibacter ubique HTCC1062 3516566 SAR11_tRNA_f_11 tRNA SAR11_tRNA_f_11 NC_007205.1 971328 971403 D tRNA-Lys 971328..971403 Candidatus Pelagibacter ubique HTCC1062 3517357 SAR11_tRNA_r_22 tRNA SAR11_tRNA_r_22 NC_007205.1 975329 975418 D tRNA-Ser 975329..975418 Candidatus Pelagibacter ubique HTCC1062 3517897 SAR11_tRNA_f_12 tRNA SAR11_tRNA_f_12 NC_007205.1 986221 986297 D tRNA-Pro 986221..986297 Candidatus Pelagibacter ubique HTCC1062 3517442 SAR11_tRNA_f_13 tRNA SAR11_tRNA_f_13 NC_007205.1 990267 990341 D tRNA-Glu 990267..990341 Candidatus Pelagibacter ubique HTCC1062 3517447 SAR11_tRNA_r_21 tRNA SAR11_tRNA_r_21 NC_007205.1 1031753 1031844 D tRNA-Ser 1031753..1031844 Candidatus Pelagibacter ubique HTCC1062 3517365 SAR11_tRNA_r_20 tRNA SAR11_tRNA_r_20 NC_007205.1 1085433 1085508 D tRNA-Trp 1085433..1085508 Candidatus Pelagibacter ubique HTCC1062 3517482 SAR11_tRNA_r_19 tRNA SAR11_tRNA_r_19 NC_007205.1 1086754 1086827 D tRNA-Gly 1086754..1086827 Candidatus Pelagibacter ubique HTCC1062 3517484 SAR11_tRNA_r_18 tRNA SAR11_tRNA_r_18 NC_007205.1 1086874 1086959 D tRNA-Tyr 1086874..1086959 Candidatus Pelagibacter ubique HTCC1062 3517485 SAR11_tRNA_f_14 tRNA SAR11_tRNA_f_14 NC_007205.1 1087868 1087943 D tRNA-Thr 1087868..1087943 Candidatus Pelagibacter ubique HTCC1062 3517487 SAR11_tRNA_r_17 tRNA SAR11_tRNA_r_17 NC_007205.1 1088732 1088816 D tRNA-Leu 1088732..1088816 Candidatus Pelagibacter ubique HTCC1062 3517875 SAR11_tRNA_r_16 tRNA SAR11_tRNA_r_16 NC_007205.1 1163196 1163277 D tRNA-Met 1163196..1163277 Candidatus Pelagibacter ubique HTCC1062 3517809 SAR11_tRNA_r_15 tRNA SAR11_tRNA_r_15 NC_007205.1 1166596 1166672 D tRNA-Met 1166596..1166672 Candidatus Pelagibacter ubique HTCC1062 3517814 SAR11_16S_rRNA rRNA SAR11_16S_rRNA NC_007205.1 511358 512831 D 16S ribosomal RNA 511358..512831 Candidatus Pelagibacter ubique HTCC1062 3517177 SAR11_23S_rRNA rRNA SAR11_23S_rRNA NC_007205.1 513101 515997 D 23S ribosomal RNA 513101..515997 Candidatus Pelagibacter ubique HTCC1062 3517180 SAR11_5S_rRNA rRNA SAR11_5S_rRNA NC_007205.1 564530 564648 D 5S ribosomal RNA 564530..564648 Candidatus Pelagibacter ubique HTCC1062 3517120