-- dump date   	20140619_024837
-- class       	Genbank::misc_feature
-- table       	misc_feature_note
-- id	note
264201000001	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3041; cl17396
264201000002	putative phosphoketolase; Provisional; Region: PRK05261
264201000003	Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent...; Region: TPP_PK; cd02011
264201000004	TPP-binding site; other site
264201000005	XFP C-terminal domain; Region: XFP_C; pfam09363
264201000006	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
264201000007	Major Facilitator Superfamily; Region: MFS_1; pfam07690
264201000008	putative substrate translocation pore; other site
264201000009	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
264201000010	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
264201000011	putative acyl-acceptor binding pocket; other site
264201000012	Exodeoxyribonuclease V, gamma subunit; Region: Exonuc_V_gamma; pfam04257
264201000013	exonuclease V subunit gamma; Provisional; Region: recC; PRK11069
264201000014	ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]; Region: RecB; COG1074
264201000015	Part of AAA domain; Region: AAA_19; pfam13245
264201000016	Family description; Region: UvrD_C_2; pfam13538
264201000017	PD-(D/E)XK nuclease superfamily; Region: PDDEXK_1; pfam12705
264201000018	exodeoxyribonuclease V, alpha subunit; Region: recD; TIGR01447
264201000019	AAA domain; Region: AAA_30; pfam13604
264201000020	Family description; Region: UvrD_C_2; pfam13538
264201000021	NMT1-like family; Region: NMT1_2; pfam13379
264201000022	ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728
264201000023	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: TauB; COG1116
264201000024	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
264201000025	Walker A/P-loop; other site
264201000026	ATP binding site [chemical binding]; other site
264201000027	Q-loop/lid; other site
264201000028	ABC transporter signature motif; other site
264201000029	Walker B; other site
264201000030	D-loop; other site
264201000031	H-loop/switch region; other site
264201000032	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
264201000033	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
264201000034	dimer interface [polypeptide binding]; other site
264201000035	conserved gate region; other site
264201000036	putative PBP binding loops; other site
264201000037	ABC-ATPase subunit interface; other site
264201000038	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
264201000039	active site
264201000040	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
264201000041	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
264201000042	putative active site [active]
264201000043	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
264201000044	Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD...; Region: RuvC_resolvase; cd00529
264201000045	active site
264201000046	putative DNA-binding cleft [nucleotide binding]; other site
264201000047	dimer interface [polypeptide binding]; other site
264201000048	Holliday junction DNA helicase RuvA; Reviewed; Region: ruvA; PRK00116
264201000049	RuvA N terminal domain; Region: RuvA_N; pfam01330
264201000050	RuvA, C-terminal domain; Region: RuvA_C; pfam07499
264201000051	Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]; Region: Nth; COG0177
264201000052	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
264201000053	minor groove reading motif; other site
264201000054	helix-hairpin-helix signature motif; other site
264201000055	substrate binding pocket [chemical binding]; other site
264201000056	active site
264201000057	tRNA modification GTPase TrmE; Reviewed; Region: trmE; PRK05291
264201000058	GTP-binding protein TrmE N-terminus; Region: TrmE_N; pfam10396
264201000059	trmE is a tRNA modification GTPase; Region: trmE; cd04164
264201000060	G1 box; other site
264201000061	GTP/Mg2+ binding site [chemical binding]; other site
264201000062	Switch I region; other site
264201000063	G2 box; other site
264201000064	Switch II region; other site
264201000065	G3 box; other site
264201000066	G4 box; other site
264201000067	G5 box; other site
264201000068	Catalytic cysteine-containing C-terminus of GTPase, MnmE; Region: GTPase_Cys_C; pfam12631
264201000069	Phosphatidylserine decarboxylase; Region: PS_Dcarbxylase; cl03656
264201000070	Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]; Region: AhpC; COG0450
264201000071	Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides; Region: PRX_Typ2cys; cd03015
264201000072	decamer (pentamer of dimers) interface [polypeptide binding]; other site
264201000073	catalytic triad [active]
264201000074	dimer interface [polypeptide binding]; other site
264201000075	peroxidatic and resolving cysteines [active]
264201000076	Metallo-beta-lactamase superfamily; Region: Lactamase_B; smart00849
264201000077	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
264201000078	RHS Repeat; Region: RHS_repeat; pfam05593
264201000079	RHS repeat-associated core domain; Region: Rhs_assc_core; TIGR03696
264201000080	Ribosomal protein L11 methyltransferase (PrmA); Region: PrmA; pfam06325
264201000081	putative regulatory protein, FmdB family; Region: CxxC_CxxC_SSSS; TIGR02605
264201000082	chaperonin GroL; Region: GroEL; TIGR02348
264201000083	GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344
264201000084	ring oligomerisation interface [polypeptide binding]; other site
264201000085	ATP/Mg binding site [chemical binding]; other site
264201000086	stacking interactions; other site
264201000087	hinge regions; other site
264201000088	Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It...; Region: cpn10; cd00320
264201000089	oligomerisation interface [polypeptide binding]; other site
264201000090	mobile loop; other site
264201000091	roof hairpin; other site
264201000092	Protein of unknown function (DUF1343); Region: DUF1343; pfam07075
264201000093	Proline dehydrogenase; Region: Pro_dh; cl03282
264201000094	Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA; Region: ALDH_PutA-P5CDH; cd07125
264201000095	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
264201000096	Glutamate binding site [chemical binding]; other site
264201000097	NAD binding site [chemical binding]; other site
264201000098	catalytic residues [active]
264201000099	ATP-dependent DNA helicase PcrA; Region: pcrA; TIGR01073
264201000100	Part of AAA domain; Region: AAA_19; pfam13245
264201000101	Family description; Region: UvrD_C_2; pfam13538
264201000102	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
264201000103	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
264201000104	Peptidase M4 family includes thermolysin, protealysin, aureolysin and neutral protease; Region: M4_neutral_protease; cd09597
264201000105	active site
264201000106	Zn binding site [ion binding]; other site
264201000107	Leucine rich repeat; Region: LRR_8; pfam13855
264201000108	Leucine rich repeat; Region: LRR_8; pfam13855
264201000109	Leucine rich repeat; Region: LRR_8; pfam13855
264201000110	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000111	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000112	binding surface
264201000113	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000114	TPR motif; other site
264201000115	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000116	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000117	binding surface
264201000118	TPR motif; other site
264201000119	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000120	TPR repeat; Region: TPR_11; pfam13414
264201000121	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000122	binding surface
264201000123	TPR motif; other site
264201000124	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000125	CHAT domain; Region: CHAT; pfam12770
264201000126	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000127	binding surface
264201000128	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000129	TPR motif; other site
264201000130	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000131	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000132	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000133	TPR repeat; Region: TPR_11; pfam13414
264201000134	binding surface
264201000135	TPR motif; other site
264201000136	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000137	TPR repeat; Region: TPR_11; pfam13414
264201000138	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000139	binding surface
264201000140	TPR motif; other site
264201000141	CHAT domain; Region: CHAT; pfam12770
264201000142	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000143	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000144	binding surface
264201000145	TPR motif; other site
264201000146	TPR repeat; Region: TPR_11; pfam13414
264201000147	TPR repeat; Region: TPR_11; pfam13414
264201000148	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000149	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000150	binding surface
264201000151	TPR motif; other site
264201000152	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000153	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000154	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000155	binding surface
264201000156	TPR motif; other site
264201000157	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000158	CHAT domain; Region: CHAT; pfam12770
264201000159	chromosome segregation protein; Provisional; Region: PRK02224
264201000160	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000161	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000162	TPR motif; other site
264201000163	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000164	binding surface
264201000165	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000166	binding surface
264201000167	TPR motif; other site
264201000168	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000169	CHAT domain; Region: CHAT; pfam12770
264201000170	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000171	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000172	TPR motif; other site
264201000173	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000174	binding surface
264201000175	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000176	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000177	TPR motif; other site
264201000178	binding surface
264201000179	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000180	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000181	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000182	binding surface
264201000183	TPR motif; other site
264201000184	TPR repeat; Region: TPR_11; pfam13414
264201000185	CHAT domain; Region: CHAT; pfam12770
264201000186	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000187	binding surface
264201000188	TPR motif; other site
264201000189	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000190	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000191	binding surface
264201000192	TPR motif; other site
264201000193	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000194	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000195	binding surface
264201000196	Tetratricopeptide repeat; Region: TPR_16; pfam13432
264201000197	TPR motif; other site
264201000198	CHAT domain; Region: CHAT; pfam12770
264201000199	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201000200	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201000201	Leucine rich repeat; Region: LRR_8; pfam13855
264201000202	RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably...; Region: RING; cl17238
264201000203	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair; cl15354
264201000204	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
264201000205	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000206	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000207	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000208	binding surface
264201000209	TPR motif; other site
264201000210	FOG: TPR repeat [General function prediction only]; Region: NrfG; COG0457
264201000211	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000212	binding surface
264201000213	TPR motif; other site
264201000214	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000215	binding surface
264201000216	TPR motif; other site
264201000217	CHAT domain; Region: CHAT; pfam12770
264201000218	CHAT domain; Region: CHAT; pfam12770
264201000219	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000220	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000221	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000222	binding surface
264201000223	TPR motif; other site
264201000224	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000225	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000226	binding surface
264201000227	TPR motif; other site
264201000228	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000229	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000230	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000231	binding surface
264201000232	TPR motif; other site
264201000233	TPR repeat; Region: TPR_11; pfam13414
264201000234	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000235	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000236	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000237	binding surface
264201000238	TPR motif; other site
264201000239	TPR repeat; Region: TPR_11; pfam13414
264201000240	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000241	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000242	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000243	binding surface
264201000244	TPR motif; other site
264201000245	TPR repeat; Region: TPR_11; pfam13414
264201000246	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000247	binding surface
264201000248	TPR motif; other site
264201000249	CHAT domain; Region: CHAT; pfam12770
264201000250	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
264201000251	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000252	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000253	TPR motif; other site
264201000254	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000255	binding surface
264201000256	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000257	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000258	binding surface
264201000259	TPR motif; other site
264201000260	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000261	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000262	TPR motif; other site
264201000263	binding surface
264201000264	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000265	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000266	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000267	binding surface
264201000268	TPR motif; other site
264201000269	TPR repeat; Region: TPR_11; pfam13414
264201000270	CHAT domain; Region: CHAT; pfam12770
264201000271	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000272	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000273	TPR motif; other site
264201000274	binding surface
264201000275	TPR repeat; Region: TPR_11; pfam13414
264201000276	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000277	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000278	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000279	binding surface
264201000280	TPR motif; other site
264201000281	TPR repeat; Region: TPR_11; pfam13414
264201000282	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000283	CHAT domain; Region: CHAT; pfam12770
264201000284	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000285	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000286	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000287	binding surface
264201000288	TPR motif; other site
264201000289	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000290	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000291	binding surface
264201000292	TPR motif; other site
264201000293	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201000294	TPR repeat; Region: TPR_11; pfam13414
264201000295	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000296	binding surface
264201000297	TPR motif; other site
264201000298	CHAT domain; Region: CHAT; pfam12770
264201000299	Peptidase M4 family includes thermolysin, protealysin, aureolysin and neutral protease; Region: M4_neutral_protease; cd09597
264201000300	active site
264201000301	Zn binding site [ion binding]; other site
264201000302	Uncharacterized ACR, COG2135; Region: DUF159; pfam02586
264201000303	Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]; Region: HtpX; COG0501
264201000304	Bacterial transcription activator, effector binding domain; Region: AraC_E_bind; smart00871
264201000305	Predicted glycosyltransferases [General function prediction only]; Region: COG1216
264201000306	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
264201000307	rod shape-determining protein MreC; Provisional; Region: PRK14872
264201000308	rod shape-determining protein MreC; Region: MreC; pfam04085
264201000309	rod shape-determining protein MreC; Region: MreC; pfam04085
264201000310	Transposase IS200 like; Region: Y1_Tnp; cl00848
264201000311	aromatic amino acid aminotransferase; Provisional; Region: PRK09257
264201000312	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
264201000313	pyridoxal 5'-phosphate binding site [chemical binding]; other site
264201000314	homodimer interface [polypeptide binding]; other site
264201000315	catalytic residue [active]
264201000316	DNA topoisomerase I/SWI domain fusion protein; Validated; Region: PRK06319
264201000317	TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I.   Type IA DNA topoisomerases remove (relax) negative supercoils in the...; Region: TOPRIM_TopoIA_TopoI; cd03363
264201000318	active site
264201000319	interdomain interaction site; other site
264201000320	putative metal-binding site [ion binding]; other site
264201000321	nucleotide binding site [chemical binding]; other site
264201000322	DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA...; Region: TOP1Ac; cd00186
264201000323	domain I; other site
264201000324	DNA binding groove [nucleotide binding]
264201000325	phosphate binding site [ion binding]; other site
264201000326	domain II; other site
264201000327	domain III; other site
264201000328	nucleotide binding site [chemical binding]; other site
264201000329	catalytic site [active]
264201000330	domain IV; other site
264201000331	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
264201000332	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
264201000333	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
264201000334	SWIB/MDM2 domain; Region: SWIB; pfam02201
264201000335	DNA protecting protein DprA; Region: dprA; TIGR00732
264201000336	DNA recombination-mediator protein A; Region: DNA_processg_A; pfam02481
264201000337	Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis; Region: DHQS; cd08195
264201000338	active site
264201000339	dimer interface [polypeptide binding]; other site
264201000340	metal binding site [ion binding]; metal-binding site
264201000341	ParB/RepB/Spo0J family partition protein; Region: parB_part; TIGR00180
264201000342	ParB-like nuclease domain; Region: ParB; smart00470
264201000343	Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217
264201000344	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
264201000345	metal-binding site [ion binding]
264201000346	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
264201000347	Soluble P-type ATPase [General function prediction only]; Region: COG4087
264201000348	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
264201000349	UDP glucuronic acid epimerase, extended (e) SDRs; Region: UDP_GE_SDE_e; cd05253
264201000350	putative NAD(P) binding site [chemical binding]; other site
264201000351	active site
264201000352	putative substrate binding site [chemical binding]; other site
264201000353	putative carbohydrate kinase; Provisional; Region: PRK10565
264201000354	YjeF-related protein N-terminus; Region: YjeF_N; pfam03853
264201000355	B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily; Region: YXKO-related; cd01171
264201000356	putative substrate binding site [chemical binding]; other site
264201000357	putative ATP binding site [chemical binding]; other site
264201000358	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated; Region: gpsA; PRK00094
264201000359	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Region: NAD_Gly3P_dh_N; pfam01210
264201000360	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; Region: NAD_Gly3P_dh_C; pfam07479
264201000361	YacP-like NYN domain; Region: NYN_YacP; cl01491
264201000362	NTPase/HAM1.  This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A...; Region: HAM1; cd00515
264201000363	active site
264201000364	dimerization interface [polypeptide binding]; other site
264201000365	transcript cleavage factor/unknown domain fusion protein; Validated; Region: PRK06330
264201000366	Transcription elongation factor, N-terminal; Region: GreA_GreB_N; pfam03449
264201000367	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
264201000368	DUF based on E. rectale Gene description (DUF3880); Region: DUF3880; pfam12996
264201000369	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
264201000370	Glycosyl transferases group 1; Region: Glyco_trans_1_2; pfam13524
264201000371	A/G-specific DNA glycosylase [DNA replication, recombination, and repair]; Region: MutY; COG1194
264201000372	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
264201000373	minor groove reading motif; other site
264201000374	helix-hairpin-helix signature motif; other site
264201000375	substrate binding pocket [chemical binding]; other site
264201000376	active site
264201000377	DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread  A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important...; Region: DNA_Glycosylase_C; cd03431
264201000378	DNA binding and oxoG recognition site [nucleotide binding]
264201000379	Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]; Region: AhpC; COG0450
264201000380	Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing...; Region: PRX_BCP; cd03017
264201000381	catalytic triad [active]
264201000382	Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the...; Region: ALAD_PBGS_aspartate_rich; cd04823
264201000383	dimer interface [polypeptide binding]; other site
264201000384	active site
264201000385	aspartate-rich active site metal binding site; other site
264201000386	allosteric magnesium binding site [ion binding]; other site
264201000387	Schiff base residues; other site
264201000388	Bacterial putative lipoprotein (DUF940); Region: DUF940; pfam06082
264201000389	Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; COG0475
264201000390	Sodium/hydrogen exchanger family; Region: Na_H_Exchanger; pfam00999
264201000391	Na(+)-translocating NADH-quinone reductase subunit A; Provisional; Region: PRK05352
264201000392	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
264201000393	E3 interaction surface; other site
264201000394	lipoyl attachment site [posttranslational modification]; other site
264201000395	NQRA C-terminal domain; Region: NQRA_SLBB; pfam11973
264201000396	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124
264201000397	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
264201000398	Walker A/P-loop; other site
264201000399	ATP binding site [chemical binding]; other site
264201000400	Q-loop/lid; other site
264201000401	ABC transporter signature motif; other site
264201000402	Walker B; other site
264201000403	D-loop; other site
264201000404	H-loop/switch region; other site
264201000405	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
264201000406	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppD; COG0444
264201000407	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
264201000408	Walker A/P-loop; other site
264201000409	ATP binding site [chemical binding]; other site
264201000410	Q-loop/lid; other site
264201000411	ABC transporter signature motif; other site
264201000412	Walker B; other site
264201000413	D-loop; other site
264201000414	H-loop/switch region; other site
264201000415	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Region: oligo_HPY; TIGR01727
264201000416	Protein of unknown function DUF47; Region: PhoU_div; pfam01865
264201000417	Phosphate/sulphate permeases [Inorganic ion transport and metabolism]; Region: PitA; COG0306
264201000418	Phosphate/sulphate permeases [Inorganic ion transport and metabolism]; Region: PitA; COG0306
264201000419	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
264201000420	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppC; COG1173
264201000421	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
264201000422	dimer interface [polypeptide binding]; other site
264201000423	conserved gate region; other site
264201000424	ABC-ATPase subunit interface; other site
264201000425	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
264201000426	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
264201000427	dimer interface [polypeptide binding]; other site
264201000428	conserved gate region; other site
264201000429	putative PBP binding loops; other site
264201000430	ABC-ATPase subunit interface; other site
264201000431	The substrate-binding component of the oligopeptide-binding protein, AppA, from Bacillus subtilis contains the type 2 periplasmic-binding fold; Region: PBP2_AppA_like; cd08514
264201000432	peptide binding site [polypeptide binding]; other site
264201000433	Bacterial extracellular solute-binding proteins, family 5 Middle; Region: SBP_bac_5; pfam00496
264201000434	Family description; Region: DsbD_2; pfam13386
264201000435	This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of...; Region: GT1_Glycogen_Phosphorylase; cd04300
264201000436	homodimer interface [polypeptide binding]; other site
264201000437	glycogen/starch/alpha-glucan phosphorylases; Region: P_ylase; TIGR02093
264201000438	active site pocket [active]
264201000439	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
264201000440	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
264201000441	substrate binding pocket [chemical binding]; other site
264201000442	membrane-bound complex binding site; other site
264201000443	hinge residues; other site
264201000444	glucose-1-phosphate adenylyltransferase; Provisional; Region: glgC; PRK02862
264201000445	ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch; Region: ADP_Glucose_PP; cd02508
264201000446	ligand binding site; other site
264201000447	oligomer interface; other site
264201000448	Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and...; Region: LbH_G1P_AT_C; cd04651
264201000449	dimer interface [polypeptide binding]; other site
264201000450	N-terminal domain interface [polypeptide binding]; other site
264201000451	sulfate 1 binding site; other site
264201000452	Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain; Region: MPP_DR1119; cd07393
264201000453	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
264201000454	putative active site [active]
264201000455	putative metal binding site [ion binding]; other site
264201000456	ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent; Region: RTPR; TIGR02505
264201000457	Class II ribonucleotide reductase, monomeric form; Region: RNR_II_monomer; cd01676
264201000458	putative active site [active]
264201000459	Src Homology 3 domain superfamily; Region: SH3; cl17036
264201000460	peptide ligand binding site [polypeptide binding]; other site
264201000461	Domain of unknown function (DUF202); Region: DUF202; pfam02656
264201000462	Oxygen tolerance; Region: BatD; pfam13584
264201000463	Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cd00198
264201000464	metal ion-dependent adhesion site (MIDAS); other site
264201000465	Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057
264201000466	metal ion-dependent adhesion site (MIDAS); other site
264201000467	haloacid dehalogenase-like hydrolase; Region: HAD; cl17202
264201000468	Phosphoserine phosphatase [Amino acid transport and metabolism]; Region: SerB; COG0560
264201000469	alpha-glucosidase; Provisional; Region: PRK10137
264201000470	Mannosyl oligosaccharide glucosidase; Region: Glyco_hydro_63; pfam03200
264201000471	G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase; Region: G1P_TT_short; cd02538
264201000472	glucose-1-phosphate thymidylyltransferase, short form; Region: rmlA; TIGR01207
264201000473	substrate binding site; other site
264201000474	tetramer interface; other site
264201000475	dTDP-4-dehydrorhamnose 3,5-epimerase; Region: dTDP_sugar_isom; pfam00908
264201000476	dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs; Region: dTDP_HR_like_SDR_e; cd05254
264201000477	RmlD substrate binding domain; Region: RmlD_sub_bind; pfam04321
264201000478	NADP binding site [chemical binding]; other site
264201000479	active site
264201000480	putative substrate binding site [chemical binding]; other site
264201000481	dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs; Region: dTDP_GD_SDR_e; cd05246
264201000482	dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]; Region: RfbB; COG1088
264201000483	NAD binding site [chemical binding]; other site
264201000484	substrate binding site [chemical binding]; other site
264201000485	homodimer interface [polypeptide binding]; other site
264201000486	active site
264201000487	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
264201000488	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
264201000489	putative substrate translocation pore; other site
264201000490	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
264201000491	Multidrug resistance efflux pump [Defense mechanisms]; Region: EmrA; COG1566
264201000492	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
264201000493	HlyD family secretion protein; Region: HlyD_3; pfam13437
264201000494	aldose 1-epimerase superfamily; Region: Aldose_epim; cl14648
264201000495	active site
264201000496	catalytic residues [active]
264201000497	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
264201000498	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
264201000499	active site
264201000500	30S ribosomal protein S20; Reviewed; Region: rpsT; PRK00239
264201000501	Predicted acyl esterases [General function prediction only]; Region: COG2936
264201000502	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; Region: PepX_C; smart00939
264201000503	Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline; Region: PC_cytidylyltransferase; cd02523
264201000504	active site
264201000505	metal-binding site
264201000506	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
264201000507	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
264201000508	Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of...; Region: RPS2; cd01425
264201000509	rRNA interaction site [nucleotide binding]; other site
264201000510	S8 interaction site; other site
264201000511	putative laminin-1 binding site; other site
264201000512	elongation factor Ts; Provisional; Region: tsf; PRK09377
264201000513	UBA/TS-N domain; Region: UBA; pfam00627
264201000514	Elongation factor TS; Region: EF_TS; pfam00889
264201000515	Elongation factor TS; Region: EF_TS; pfam00889
264201000516	DNA mismatch repair protein; Reviewed; Region: mutL; PRK00095
264201000517	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
264201000518	ATP binding site [chemical binding]; other site
264201000519	Mg2+ binding site [ion binding]; other site
264201000520	G-X-G motif; other site
264201000521	MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is...; Region: MutL_Trans; cd00782
264201000522	ATP binding site [chemical binding]; other site
264201000523	MutL C terminal dimerisation domain; Region: MutL_C; pfam08676
264201000524	tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]; Region: PcnB; COG0617
264201000525	Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398
264201000526	active site
264201000527	NTP binding site [chemical binding]; other site
264201000528	metal binding triad [ion binding]; metal-binding site
264201000529	Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627
264201000530	rRNA methylases [Translation, ribosomal structure and biogenesis]; Region: SpoU; COG0566
264201000531	RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; smart00967
264201000532	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
264201000533	S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of...; Region: S1_YloQ_GTPase; cd04466
264201000534	RNA binding site [nucleotide binding]; other site
264201000535	homodimer interface [polypeptide binding]; other site
264201000536	GTPase RsgA; Reviewed; Region: PRK00098
264201000537	Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; Region: YjeQ_EngC; cd01854
264201000538	GTPase/Zn-binding domain interface [polypeptide binding]; other site
264201000539	GTP/Mg2+ binding site [chemical binding]; other site
264201000540	G4 box; other site
264201000541	G5 box; other site
264201000542	G1 box; other site
264201000543	Switch I region; other site
264201000544	G2 box; other site
264201000545	G3 box; other site
264201000546	Switch II region; other site
264201000547	enolase; Provisional; Region: eno; PRK00077
264201000548	Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions; Region: enolase; cd03313
264201000549	dimer interface [polypeptide binding]; other site
264201000550	metal binding site [ion binding]; metal-binding site
264201000551	substrate binding pocket [chemical binding]; other site
264201000552	Bax inhibitor 1 like; Region: BaxI_1; cl17691
264201000553	preprotein translocase subunit SecA; Reviewed; Region: secA; PRK12899
264201000554	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
264201000555	ATP binding site [chemical binding]; other site
264201000556	putative Mg++ binding site [ion binding]; other site
264201000557	SecA preprotein cross-linking domain; Region: SecA_PP_bind; smart00958
264201000558	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
264201000559	nucleotide binding region [chemical binding]; other site
264201000560	ATP-binding site [chemical binding]; other site
264201000561	SEC-C motif; Region: SEC-C; pfam02810
264201000562	Aspartyl/Asparaginyl beta-hydroxylase; Region: Asp_Arg_Hydrox; cl17820
264201000563	Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]; Region: ArsB; COG1055
264201000564	Anion permease ArsB/NhaD.  These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life.  A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl17221
264201000565	transmembrane helices; other site
264201000566	dihydrolipoamide dehydrogenase; Validated; Region: PRK06327
264201000567	Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]; Region: GlpB; cl17730
264201000568	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
264201000569	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
264201000570	lipoyl synthase; Provisional; Region: PRK05481
264201000571	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
264201000572	FeS/SAM binding site; other site
264201000573	farnesyltranstransferase; Region: PLN02789
264201000574	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
264201000575	Sel1-like repeats; Region: SEL1; smart00671
264201000576	Sel1-like repeats; Region: SEL1; smart00671
264201000577	Sel1-like repeats; Region: SEL1; smart00671
264201000578	Sel1-like repeats; Region: SEL1; smart00671
264201000579	Sel1-like repeats; Region: SEL1; smart00671
264201000580	Thymidylate synthase complementing protein; Region: Thy1; cl03630
264201000581	Thymidylate synthase complementing protein; Region: Thy1; pfam02511
264201000582	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201000583	S-adenosylmethionine binding site [chemical binding]; other site
264201000584	16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187
264201000585	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
264201000586	RNA binding surface [nucleotide binding]; other site
264201000587	Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi); Region: PseudoU_synth; cl00130
264201000588	active site
264201000589	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
264201000590	catalytic core [active]
264201000591	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
264201000592	cysteine desulfurase NifS; Region: FeS_nifS; TIGR03402
264201000593	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
264201000594	catalytic residue [active]
264201000595	NifU homolog involved in Fe-S cluster formation [Energy production and conversion]; Region: IscU; COG0822
264201000596	Iron-sulfur cluster scaffold-like proteins; Region: IscU_like; cd06664
264201000597	NifU-like domain; Region: NifU; cl00484
264201000598	Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]; Region: BirA; COG0340
264201000599	Biotin/lipoate A/B protein ligase family; Region: BPL_LplA_LipB; cl14057
264201000600	rod shape-determining protein RodA; Region: rodA_shape; TIGR02210
264201000601	Tryptophan/tyrosine permease family; Region: Trp_Tyr_perm; cl17316
264201000602	aromatic amino acid transport protein; Region: araaP; TIGR00837
264201000603	Tryptophan/tyrosine permease family; Region: Trp_Tyr_perm; cl17316
264201000604	aromatic amino acid transport protein; Region: araaP; TIGR00837
264201000605	tryptophanyl-tRNA synthetase II; Reviewed; Region: PRK12282
264201000606	catalytic core domain of tryptophanyl-tRNA synthetase; Region: TrpRS_core; cd00806
264201000607	active site
264201000608	HIGH motif; other site
264201000609	dimer interface [polypeptide binding]; other site
264201000610	KMSKS motif; other site
264201000611	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000612	TPR motif; other site
264201000613	binding surface
264201000614	Tetratricopeptide repeat; Region: TPR_16; pfam13432
264201000615	putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917
264201000616	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cl02429
264201000617	binding surface
264201000618	TPR motif; other site
264201000619	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201000620	binding surface
264201000621	TPR repeat; Region: TPR_11; pfam13414
264201000622	TPR motif; other site
264201000623	excinuclease ABC subunit B; Provisional; Region: PRK05298
264201000624	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
264201000625	ATP binding site [chemical binding]; other site
264201000626	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
264201000627	nucleotide binding region [chemical binding]; other site
264201000628	ATP-binding site [chemical binding]; other site
264201000629	Ultra-violet resistance protein B; Region: UvrB; pfam12344
264201000630	Chlamydia CHLPS protein (DUF818); Region: DUF818; pfam05677
264201000631	Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]; Region: DinG; COG1199
264201000632	CRISPR/Cas system-associated DinG family helicase Csf4; Region: Csf4_U; cl17460
264201000633	DEAD_2; Region: DEAD_2; pfam06733
264201000634	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
264201000635	nucleotide binding region [chemical binding]; other site
264201000636	Sigma-70 factor, region 1.1; Region: Sigma70_r1_1; pfam03979
264201000637	RNA polymerase sigma factor RpoD; Validated; Region: PRK05658
264201000638	Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140
264201000639	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
264201000640	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
264201000641	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
264201000642	DNA binding residues [nucleotide binding]
264201000643	Competence protein CoiA-like family; Region: CoiA; cl11541
264201000644	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201000645	S-adenosylmethionine binding site [chemical binding]; other site
264201000646	Predicted acyltransferases [Lipid metabolism]; Region: COG1835
264201000647	ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: TagH; COG1134
264201000648	ATP-binding cassette component of polysaccharide transport system; Region: ABC_KpsT_Wzt; cd03220
264201000649	Walker A/P-loop; other site
264201000650	ATP binding site [chemical binding]; other site
264201000651	Q-loop/lid; other site
264201000652	ABC transporter signature motif; other site
264201000653	Walker B; other site
264201000654	D-loop; other site
264201000655	H-loop/switch region; other site
264201000656	C-Terminal domain of O-antigenic polysaccharide transporter protein Wzt and related proteins; Region: Wzt_C-like; cd10147
264201000657	ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: TagG; COG1682
264201000658	ABC-2 type transporter; Region: ABC2_membrane; pfam01061
264201000659	IncA protein; Region: IncA; pfam04156
264201000660	Uncharacterized protein family (UPF0242); Region: UPF0242; pfam06785
264201000661	Polysaccharide biosynthesis/export protein; Region: Poly_export; pfam02563
264201000662	polysaccharide export protein Wza; Provisional; Region: PRK15078
264201000663	SLBB domain; Region: SLBB; pfam10531
264201000664	chain length determinant protein tyrosine kinase EpsG; Region: EpsG; TIGR03029
264201000665	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
264201000666	Subfamily of Glycosyltransferase Family GT2 of unknown function; Region: GT_2_like_c; cd04186
264201000667	Probable Catalytic site; other site
264201000668	metal-binding site
264201000669	cysteine desulfurase activator complex subunit SufB; Provisional; Region: PRK11814
264201000670	putative ABC transporter; Region: ycf24; CHL00085
264201000671	sulfate ABC transporter protein; Validated; Region: ycf16; CHL00131
264201000672	ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Region: ABC_FeS_Assembly; cd03217
264201000673	Walker A/P-loop; other site
264201000674	ATP binding site [chemical binding]; other site
264201000675	Q-loop/lid; other site
264201000676	ABC transporter signature motif; other site
264201000677	Walker B; other site
264201000678	D-loop; other site
264201000679	H-loop/switch region; other site
264201000680	FeS assembly protein SufD; Region: sufD; TIGR01981
264201000681	Uncharacterized protein family (UPF0051); Region: UPF0051; pfam01458
264201000682	Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520
264201000683	Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS...; Region: SufS_like; cd06453
264201000684	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
264201000685	catalytic residue [active]
264201000686	Telomere recombination; Region: Sua5_yciO_yrdC; pfam01300
264201000687	Putative GTP-binding controlling metal-binding; Region: SUA5; pfam03481
264201000688	transglutaminase; Provisional; Region: tgl; PRK03187
264201000689	Peptidase M4 family includes thermolysin, protealysin, aureolysin and neutral protease; Region: M4_neutral_protease; cd09597
264201000690	active site
264201000691	Zn binding site [ion binding]; other site
264201000692	Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]; Region: UgpQ; COG0584
264201000693	Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins; Region: GDPD_Rv2277c_like; cd08580
264201000694	putative active site [active]
264201000695	catalytic site [active]
264201000696	putative metal binding site [ion binding]; other site
264201000697	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201000698	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201000699	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201000700	Bacterial export proteins, family 1; Region: Bac_export_1; cl00734
264201000701	Bacterial export proteins, family 3; Region: Bac_export_3; cl00867
264201000702	type III secretion system protein; Reviewed; Region: PRK09617
264201000703	type III secretion system protein; Validated; Region: PRK06328
264201000704	Flagellar assembly protein FliH; Region: FliH; pfam02108
264201000705	type III secretion apparatus lipoprotein, YscJ/HrcJ family; Region: III_secr_YscJ; TIGR02544
264201000706	30S ribosomal protein S10; Reviewed; Region: rpsJ; PRK00596
264201000707	elongation factor G; Reviewed; Region: PRK12739
264201000708	Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis; Region: EF-G; cd01886
264201000709	G1 box; other site
264201000710	putative GEF interaction site [polypeptide binding]; other site
264201000711	GTP/Mg2+ binding site [chemical binding]; other site
264201000712	Switch I region; other site
264201000713	G2 box; other site
264201000714	G3 box; other site
264201000715	Switch II region; other site
264201000716	G4 box; other site
264201000717	G5 box; other site
264201000718	EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis...; Region: EFG_mtEFG_II; cd04088
264201000719	EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2...; Region: EFG_mtEFG1_IV; cd01434
264201000720	EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G.  Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2...; Region: EFG_mtEFG_C; cd03713
264201000721	30S ribosomal protein S7; Validated; Region: PRK05302
264201000722	S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368
264201000723	S17 interaction site [polypeptide binding]; other site
264201000724	S8 interaction site; other site
264201000725	16S rRNA interaction site [nucleotide binding]; other site
264201000726	streptomycin interaction site [chemical binding]; other site
264201000727	23S rRNA interaction site [nucleotide binding]; other site
264201000728	aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site
264201000729	Putative transcriptional regulators (Ypuh-like); Region: DUF387; pfam04079
264201000730	ScpA/B protein; Region: ScpA_ScpB; cl00598
264201000731	C-terminal peptidase (prc); Region: prc; TIGR00225
264201000732	PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for...; Region: PDZ_CTP_protease; cd00988
264201000733	protein binding site [polypeptide binding]; other site
264201000734	C-terminal processing peptidase; serine protease family S41; Region: Peptidase_S41_CPP; cd07560
264201000735	Catalytic dyad [active]
264201000736	Protein of unknown function (DUF3296); Region: DUF3296; pfam11726
264201000737	50S ribosomal protein L21/unknown domain fusion protein; Provisional; Region: PRK12278
264201000738	50S ribosomal protein L21; Validated; Region: rplU; PRK05573
264201000739	50S ribosomal protein L27; Validated; Region: rpmA; PRK05435
264201000740	Obg family GTPase CgtA; Region: Obg_CgtA; TIGR02729
264201000741	GTP1/OBG; Region: GTP1_OBG; pfam01018
264201000742	Obg GTPase; Region: Obg; cd01898
264201000743	G1 box; other site
264201000744	GTP/Mg2+ binding site [chemical binding]; other site
264201000745	Switch I region; other site
264201000746	G2 box; other site
264201000747	G3 box; other site
264201000748	Switch II region; other site
264201000749	G4 box; other site
264201000750	G5 box; other site
264201000751	transcription termination factor Rho; Provisional; Region: rho; PRK09376
264201000752	Rho termination factor, N-terminal domain; Region: Rho_N; pfam07498
264201000753	Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA...; Region: Rho_CSD; cd04459
264201000754	RNA binding site [nucleotide binding]; other site
264201000755	Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the...; Region: rho_factor; cd01128
264201000756	multimer interface [polypeptide binding]; other site
264201000757	Walker A motif; other site
264201000758	ATP binding site [chemical binding]; other site
264201000759	Walker B motif; other site
264201000760	Dephospho-CoA kinase [Coenzyme metabolism]; Region: CoaE; COG0237
264201000761	Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis; Region: DPCK; cd02022
264201000762	CoA-binding site [chemical binding]; other site
264201000763	ATP-binding [chemical binding]; other site
264201000764	DNA polymerase I; Provisional; Region: PRK05755
264201000765	PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: PIN_53EXO; cd09859
264201000766	active site
264201000767	metal binding site 1 [ion binding]; metal-binding site
264201000768	putative 5' ssDNA interaction site; other site
264201000769	metal binding site 3; metal-binding site
264201000770	metal binding site 2 [ion binding]; metal-binding site
264201000771	H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: H3TH_53EXO; cd09898
264201000772	putative DNA binding site [nucleotide binding]; other site
264201000773	putative metal binding site [ion binding]; other site
264201000774	DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139
264201000775	active site
264201000776	catalytic site [active]
264201000777	substrate binding site [chemical binding]; other site
264201000778	Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication; Region: DNA_pol_A_pol_I_C; cd08637
264201000779	active site
264201000780	DNA binding site [nucleotide binding]
264201000781	catalytic site [active]
264201000782	signal peptide peptidase SppA, 36K type; Region: SppA_dom; TIGR00706
264201000783	Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_N_C; cd07023
264201000784	tandem repeat interface [polypeptide binding]; other site
264201000785	oligomer interface [polypeptide binding]; other site
264201000786	active site residues [active]
264201000787	Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]; Region: DAP2; COG1506
264201000788	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
264201000789	FAD binding domain; Region: FAD_binding_1; pfam00667
264201000790	Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ...; Region: SiR; cd06199
264201000791	FAD binding pocket [chemical binding]; other site
264201000792	FAD binding motif [chemical binding]; other site
264201000793	catalytic residues [active]
264201000794	NAD binding pocket [chemical binding]; other site
264201000795	phosphate binding motif [ion binding]; other site
264201000796	beta-alpha-beta structure motif; other site
264201000797	MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis; Region: MECDP_synthase; cd00554
264201000798	homotrimer interaction site [polypeptide binding]; other site
264201000799	zinc binding site [ion binding]; other site
264201000800	CDP-binding sites; other site
264201000801	UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Region: murA; TIGR01072
264201000802	UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555
264201000803	hinge; other site
264201000804	active site
264201000805	Radical SAM superfamily; Region: Radical_SAM; pfam04055
264201000806	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
264201000807	FeS/SAM binding site; other site
264201000808	Arginyl tRNA synthetase N terminal domain; Region: Arg_tRNA_synt_N; pfam03485
264201000809	arginine-tRNA ligase; Region: PLN02286
264201000810	catalytic core domain of arginyl-tRNA synthetases; Region: ArgRS_core; cd00671
264201000811	active site
264201000812	HIGH motif; other site
264201000813	KMSK motif region; other site
264201000814	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
264201000815	tRNA binding surface [nucleotide binding]; other site
264201000816	anticodon binding site; other site
264201000817	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cl17189
264201000818	ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]; Region: clpA; COG0542
264201000819	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201000820	Walker A motif; other site
264201000821	ATP binding site [chemical binding]; other site
264201000822	Walker B motif; other site
264201000823	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431
264201000824	Protein of unknown function (DUF2709); Region: DUF2709; pfam10915
264201000825	Predicted ATPase or kinase [General function prediction only]; Region: COG0802
264201000826	YihA (EngB) GTPase family; Region: YihA_EngB; cd01876
264201000827	G1 box; other site
264201000828	GTP/Mg2+ binding site [chemical binding]; other site
264201000829	Switch I region; other site
264201000830	G2 box; other site
264201000831	G3 box; other site
264201000832	Switch II region; other site
264201000833	G4 box; other site
264201000834	G5 box; other site
264201000835	DNA polymerase III subunit epsilon; Validated; Region: PRK06310
264201000836	DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127
264201000837	active site
264201000838	catalytic site [active]
264201000839	substrate binding site [chemical binding]; other site
264201000840	Protein of unknown function (DUF3820); Region: DUF3820; cl01411
264201000841	pyridoxal 5'-phosphate synthase, synthase subunit Pdx1; Region: TIGR00343
264201000842	PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP,  present in some eubacteria, in archaea, fungi, plants, plasmodia, and some...; Region: pdxS; cd04727
264201000843	active site
264201000844	multimer interface [polypeptide binding]; other site
264201000845	Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis; Region: GATase1_PB; cd01749
264201000846	predicted active site [active]
264201000847	catalytic triad [active]
264201000848	Phosphoglycerate kinase; Region: PGK; pfam00162
264201000849	Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level...; Region: Phosphoglycerate_kinase; cd00318
264201000850	substrate binding site [chemical binding]; other site
264201000851	hinge regions; other site
264201000852	ADP binding site [chemical binding]; other site
264201000853	catalytic site [active]
264201000854	TLC ATP/ADP transporter; Region: TLC; pfam03219
264201000855	TLC ATP/ADP transporter; Region: TLC; pfam03219
264201000856	CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453
264201000857	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscS; COG0668
264201000858	Mechanosensitive ion channel; Region: MS_channel; pfam00924
264201000859	glutamyl-tRNA synthetase; Reviewed; Region: gltX; PRK01406
264201000860	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
264201000861	HIGH motif; other site
264201000862	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
264201000863	active site
264201000864	KMSKS motif; other site
264201000865	Periplasmic protease [Cell envelope biogenesis, outer membrane]; Region: Prc; COG0793
264201000866	PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for...; Region: PDZ_CTP_protease; cd00988
264201000867	protein binding site [polypeptide binding]; other site
264201000868	C-terminal processing peptidase; serine protease family S41; Region: Peptidase_S41_CPP; cd07560
264201000869	Catalytic dyad [active]
264201000870	Helix-turn-helix domain; Region: HTH_17; cl17695
264201000871	Helix-turn-helix domain; Region: HTH_17; pfam12728
264201000872	SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]; Region: TrmA; COG2265
264201000873	Predicted RNA-binding protein, contains TRAM domain [General function prediction only]; Region: COG3269
264201000874	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201000875	S-adenosylmethionine binding site [chemical binding]; other site
264201000876	single-stranded-DNA-specific exonuclease RecJ; Region: recJ; TIGR00644
264201000877	DHH family; Region: DHH; pfam01368
264201000878	DHHA1 domain; Region: DHHA1; pfam02272
264201000879	TLC ATP/ADP transporter; Region: TLC; pfam03219
264201000880	Preprotein translocase subunit SecD [Intracellular trafficking and secretion]; Region: SecD; COG0342
264201000881	protein-export membrane protein, SecD/SecF family; Region: 2A0604s01; TIGR00916
264201000882	preprotein translocase subunit SecF; Reviewed; Region: secF; PRK13022
264201000883	Protein export membrane protein; Region: SecD_SecF; pfam02355
264201000884	CobQ/CobB/MinD/ParA nucleotide binding domain; Region: CbiA; pfam01656
264201000885	MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions...; Region: MRP-like; cd02037
264201000886	Protein of unknown function (DUF971); Region: DUF971; pfam06155
264201000887	Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+.  Their ligand binding site is formed in the interface between...; Region: TroA-like; cl00262
264201000888	Periplasmic solute binding protein family; Region: SBP_bac_9; pfam01297
264201000889	intersubunit interface [polypeptide binding]; other site
264201000890	ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]; Region: ZnuC; COG1121
264201000891	ATP-binding cassette domain of the metal-type transporters; Region: ABC_Metallic_Cations; cd03235
264201000892	ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108
264201000893	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
264201000894	ABC-ATPase subunit  interface; other site
264201000895	dimer interface [polypeptide binding]; other site
264201000896	putative PBP binding regions; other site
264201000897	Mn-dependent transcriptional regulator [Transcription]; Region: TroR; COG1321
264201000898	Iron dependent repressor, metal binding and dimerisation domain; Region: Fe_dep_repr_C; pfam02742
264201000899	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
264201000900	ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108
264201000901	ABC-ATPase subunit  interface; other site
264201000902	dimer interface [polypeptide binding]; other site
264201000903	putative PBP binding regions; other site
264201000904	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional; Region: PRK05447
264201000905	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Region: DXP_reductoisom; pfam02670
264201000906	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; Region: DXP_redisom_C; pfam08436
264201000907	DXP reductoisomerase C-terminal domain; Region: DXPR_C; pfam13288
264201000908	RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163
264201000909	active site
264201000910	PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated; Region: PDZ; cl00117
264201000911	RIP metalloprotease RseP; Region: TIGR00054
264201000912	PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated; Region: PDZ; cl00117
264201000913	Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic...; Region: S2P-M50; cl10020
264201000914	putative substrate binding region [chemical binding]; other site
264201000915	Amino acid permease; Region: AA_permease_2; pfam13520
264201000916	Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which  binds to Adenosine nucleotide; Region: AANH_like; cl00292
264201000917	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cl15309
264201000918	Leucine-rich repeats; other site
264201000919	Substrate binding site [chemical binding]; other site
264201000920	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cd00116
264201000921	Leucine-rich repeats; other site
264201000922	Substrate binding site [chemical binding]; other site
264201000923	Leucine rich repeat; Region: LRR_8; pfam13855
264201000924	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201000925	Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins; Region: HTH_MerR-trunc; cd04762
264201000926	DNA binding residues [nucleotide binding]
264201000927	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
264201000928	active site
264201000929	phosphorylation site [posttranslational modification]
264201000930	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
264201000931	active site
264201000932	phosphorylation site [posttranslational modification]
264201000933	Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557
264201000934	trimer interface [polypeptide binding]; other site
264201000935	active site
264201000936	acetyl-CoA carboxylase subunit beta; Validated; Region: PRK05654
264201000937	malonate decarboxylase subunit beta; Reviewed; Region: PRK07189; cl17682
264201000938	Superoxide dismutase [Inorganic ion transport and metabolism]; Region: SodA; COG0605
264201000939	Iron/manganese superoxide dismutases, alpha-hairpin domain; Region: Sod_Fe_N; pfam00081
264201000940	Iron/manganese superoxide dismutases, C-terminal domain; Region: Sod_Fe_C; pfam02777
264201000941	uroporphyrinogen-III synthase; Reviewed; Region: hemD; PRK05928
264201000942	Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in...; Region: HemD; cd06578
264201000943	active site
264201000944	porphobilinogen deaminase; Provisional; Region: PRK01066
264201000945	Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of...; Region: HMBS; cl17708
264201000946	domain interfaces; other site
264201000947	active site
264201000948	DNA repair protein RadA; Provisional; Region: PRK11823
264201000949	Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of...; Region: Sms; cd01121
264201000950	Walker A motif/ATP binding site; other site
264201000951	ATP binding site [chemical binding]; other site
264201000952	Walker B motif; other site
264201000953	ribonuclease III, bacterial; Region: RNaseIII; TIGR02191
264201000954	RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in...; Region: RIBOc; cd00593
264201000955	dimerization interface [polypeptide binding]; other site
264201000956	active site
264201000957	metal binding site [ion binding]; metal-binding site
264201000958	Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III; Region: DSRM; cd00048
264201000959	dsRNA binding site [nucleotide binding]; other site
264201000960	Lipoate-protein ligase A [Coenzyme metabolism]; Region: LplA; COG0095
264201000961	Chlamydial GcvH-like protein upstream region protein; Region: near_not_gcvH; TIGR03076
264201000962	Chlamydial GcvH-like protein upstream region protein; Region: near_not_gcvH; TIGR03076
264201000963	Domon-like ligand-binding domains; Region: DOMON_like; cd00241
264201000964	putative ligand binding site [chemical binding]; other site
264201000965	glycine cleavage system aminomethyltransferase T; Reviewed; Region: gcvT; PRK00389
264201000966	Glycine cleavage T-protein C-terminal barrel domain; Region: GCV_T_C; pfam08669
264201000967	Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and...; Region: GCS_H; cd06848
264201000968	lipoyl attachment site [posttranslational modification]; other site
264201000969	Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]; Region: GcvP; COG0403
264201000970	Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1; Region: GDC-P; cd00613
264201000971	tetramer interface [polypeptide binding]; other site
264201000972	pyridoxal 5'-phosphate binding site [chemical binding]; other site
264201000973	catalytic residue [active]
264201000974	Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1; Region: GDC-P; cd00613
264201000975	tetramer interface [polypeptide binding]; other site
264201000976	pyridoxal 5'-phosphate binding site [chemical binding]; other site
264201000977	tyrosine decarboxylase MnfA; Region: tyr_de_CO2_Arch; TIGR03812
264201000978	catalytic residue [active]
264201000979	alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional; Region: PRK15401
264201000980	heavy metal translocating P-type ATPase; Region: ATPase-IB_hvy; TIGR01525
264201000981	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
264201000982	Soluble P-type ATPase [General function prediction only]; Region: COG4087
264201000983	heavy metal efflux pump, CzcA family; Region: 2A0601; TIGR00914
264201000984	Membrane Fusion Protein cluster 2 (function with RND porters); Region: 8a0102; TIGR00999
264201000985	HlyD family secretion protein; Region: HlyD_3; pfam13437
264201000986	Outer membrane efflux protein; Region: OEP; pfam02321
264201000987	Outer membrane efflux protein; Region: OEP; pfam02321
264201000988	Transposase; Region: HTH_Tnp_IS630; pfam01710
264201000989	Helix-turn-helix domain; Region: HTH_28; pfam13518
264201000990	Na(+)-translocating NADH-quinone reductase subunit E; Provisional; Region: PRK01061
264201000991	Na(+)-translocating NADH-quinone reductase subunit D; Validated; Region: PRK09292
264201000992	Na(+)-translocating NADH-quinone reductase subunit C; Provisional; Region: PRK05346
264201000993	NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; Region: nqrC; TIGR01938
264201000994	Na(+)-translocating NADH-quinone reductase subunit B; Provisional; Region: PRK01024
264201000995	Predicted amidophosphoribosyltransferases [General function prediction only]; Region: ComFC; COG1040
264201000996	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
264201000997	active site
264201000998	Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]; Region: CorA; COG0598
264201000999	Thermotoga maritima CorA_like subfamily; Region: TmCorA-like_1; cd12828
264201001000	oligomer interface [polypeptide binding]; other site
264201001001	metal binding site [ion binding]; metal-binding site
264201001002	metal binding site [ion binding]; metal-binding site
264201001003	Cl binding site [ion binding]; other site
264201001004	aspartate ring; other site
264201001005	basic sphincter; other site
264201001006	putative hydrophobic gate; other site
264201001007	periplasmic entrance; other site
264201001008	chromosomal replication initiation protein; Reviewed; Region: dnaA; PRK00149
264201001009	DnaA N-terminal domain; Region: DnaA_N; pfam11638
264201001010	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201001011	Walker A motif; other site
264201001012	ATP binding site [chemical binding]; other site
264201001013	Walker B motif; other site
264201001014	C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571
264201001015	DnaA box-binding interface [nucleotide binding]; other site
264201001016	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399
264201001017	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
264201001018	inhibitor-cofactor binding pocket; inhibition site
264201001019	pyridoxal 5'-phosphate binding site [chemical binding]; other site
264201001020	catalytic residue [active]
264201001021	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201001022	binding surface
264201001023	TPR motif; other site
264201001024	TPR repeat; Region: TPR_11; pfam13414
264201001025	16S rRNA m(4)C1402 methyltranserfase; Provisional; Region: PRK00050
264201001026	MraW methylase family; Region: Methyltransf_5; cl17771
264201001027	hypothetical protein; Region: PHA02414
264201001028	Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]; Region: FtsI; COG0768
264201001029	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
264201001030	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; pfam00905
264201001031	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional; Region: murE; PRK00139
264201001032	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
264201001033	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
264201001034	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
264201001035	N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: AmiC; COG0860
264201001036	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696
264201001037	active site
264201001038	metal binding site [ion binding]; metal-binding site
264201001039	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
264201001040	Sel1 repeat; Region: Sel1; pfam08238
264201001041	Sel1-like repeats; Region: SEL1; smart00671
264201001042	6-phosphogluconate dehydrogenase-like protein; Reviewed; Region: PRK09599
264201001043	6-phosphogluconate dehydrogenase; Validated; Region: PRK09287
264201001044	6-phosphogluconate dehydrogenase, C-terminal domain; Region: 6PGD; pfam00393
264201001045	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
264201001046	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
264201001047	putative acyl-acceptor binding pocket; other site
264201001048	cytidylate kinase; Provisional; Region: cmk; PRK00023
264201001049	Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor; Region: CMPK; cd02020
264201001050	CMP-binding site; other site
264201001051	The sites determining sugar specificity; other site
264201001052	Cytidylyltransferase family; Region: CTP_transf_1; pfam01148
264201001053	CDP-diglyceride synthetase [Lipid metabolism]; Region: CdsA; COG0575
264201001054	Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl...; Region: CIS_IPPS; cl00230
264201001055	Putative undecaprenyl diphosphate synthase; Region: Prenyltransf; pfam01255
264201001056	catalytic residue [active]
264201001057	putative FPP diphosphate  binding site; other site
264201001058	putative FPP binding hydrophobic cleft; other site
264201001059	dimer interface [polypeptide binding]; other site
264201001060	putative IPP diphosphate binding site; other site
264201001061	GTP-binding protein LepA; Provisional; Region: PRK05433
264201001062	LepA also known as Elongation Factor 4 (EF4); Region: LepA; cd01890
264201001063	G1 box; other site
264201001064	putative GEF interaction site [polypeptide binding]; other site
264201001065	GTP/Mg2+ binding site [chemical binding]; other site
264201001066	Switch I region; other site
264201001067	G2 box; other site
264201001068	G3 box; other site
264201001069	Switch II region; other site
264201001070	G4 box; other site
264201001071	G5 box; other site
264201001072	lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu...; Region: lepA_II; cd03699
264201001073	lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane.   LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits...; Region: lepA_C; cd03709
264201001074	GTP-binding protein LepA C-terminus; Region: LepA_C; pfam06421
264201001075	Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains; Region: RhoGEF; cl02571
264201001076	GTPase interaction site [polypeptide binding]; other site
264201001077	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
264201001078	active site
264201001079	SWIB/MDM2 domain; Region: SWIB; pfam02201
264201001080	phosphodiesterase YaeI; Provisional; Region: PRK11340
264201001081	Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain; Region: MPP_YkuE_C; cd07385
264201001082	putative active site [active]
264201001083	putative metal binding site [ion binding]; other site
264201001084	CDP-ME synthetase is involved in mevalonate-independent isoprenoid production; Region: CDP-ME_synthetase; cd02516
264201001085	substrate binding site; other site
264201001086	dimer interface; other site
264201001087	tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021
264201001088	Eukaryotic and bacterial pseudouridine synthases similar to E.  coli TruA; Region: PseudoU_synth_EcTruA; cd02570
264201001089	dimerization interface 3.5A [polypeptide binding]; other site
264201001090	active site
264201001091	haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; Region: HAD-SF-IA-v3; TIGR01509
264201001092	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
264201001093	motif II; other site
264201001094	This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cd06587
264201001095	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
264201001096	active site
264201001097	A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various...; Region: Peptidase_C39A; cd02549
264201001098	putative active site [active]
264201001099	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201001100	BTB/POZ domain; Region: BTB; cl02518
264201001101	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201001102	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201001103	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201001104	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201001105	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201001106	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201001107	Type I restriction enzyme R protein N terminus (HSDR_N); Region: HSDR_N; cl14958
264201001108	RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal...; Region: RaiA; cd00552
264201001109	30S subunit binding site; other site
264201001110	Predicted Fe-S-cluster redox enzyme [General function prediction only]; Region: COG0820
264201001111	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
264201001112	FeS/SAM binding site; other site
264201001113	Recombination protein O N terminal; Region: RecO_N; pfam11967
264201001114	DNA repair protein RecO; Region: reco; TIGR00613
264201001115	Recombination protein O C terminal; Region: RecO_C; pfam02565
264201001116	Uncharacterized ACR, YagE family COG1723; Region: DUF155; cl00751
264201001117	Uncharacterized membrane protein, putative virulence factor [General function prediction only]; Region: MviN; COG0728
264201001118	MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_MurJ_like; cd13123
264201001119	endonuclease IV; Provisional; Region: PRK01060
264201001120	AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of...; Region: AP2Ec; cd00019
264201001121	AP (apurinic/apyrimidinic) site pocket; other site
264201001122	DNA interaction; other site
264201001123	Metal-binding active site; metal-binding site
264201001124	asparaginyl-tRNA synthetase; Validated; Region: asnC; PRK03932
264201001125	EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB...; Region: EcAsnRS_like_N; cd04318
264201001126	putative dimer interface [polypeptide binding]; other site
264201001127	putative anticodon binding site; other site
264201001128	Asx tRNA synthetase (AspRS/AsnRS) class II core domain.  Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as...; Region: AsxRS_core; cd00776
264201001129	homodimer interface [polypeptide binding]; other site
264201001130	motif 1; other site
264201001131	motif 2; other site
264201001132	active site
264201001133	motif 3; other site
264201001134	glutamyl-tRNA reductase; Validated; Region: hemA; PRK00676
264201001135	NADP-binding domain of glutamyl-tRNA reductase; Region: NAD_bind_Glutamyl_tRNA_reduct; cd05213
264201001136	tRNA; other site
264201001137	putative tRNA binding site [nucleotide binding]; other site
264201001138	putative NADP binding site [chemical binding]; other site
264201001139	UDP-N-acetylglucosamine 4,6-dehydratase; Region: PseB; TIGR03589
264201001140	UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs; Region: UDP_invert_4-6DH_SDR_e; cd05237
264201001141	NAD(P) binding site [chemical binding]; other site
264201001142	homodimer interface [polypeptide binding]; other site
264201001143	substrate binding site [chemical binding]; other site
264201001144	active site
264201001145	DNA topoisomerase IV subunit B; Reviewed; Region: PRK05559
264201001146	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Region: HATPase_c; pfam02518
264201001147	ATP binding site [chemical binding]; other site
264201001148	Mg2+ binding site [ion binding]; other site
264201001149	G-X-G motif; other site
264201001150	TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are; Region: TopoII_Trans_DNA_gyrase; cd00822
264201001151	anchoring element; other site
264201001152	dimer interface [polypeptide binding]; other site
264201001153	ATP binding site [chemical binding]; other site
264201001154	TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands...; Region: TOPRIM_TopoIIA_like; cd01030
264201001155	active site
264201001156	putative metal-binding site [ion binding]; other site
264201001157	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
264201001158	DNA topoisomerase IV subunit A; Provisional; Region: PRK09631
264201001159	DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes...; Region: TOP4c; cl00148
264201001160	CAP-like domain; other site
264201001161	active site
264201001162	primary dimer interface [polypeptide binding]; other site
264201001163	RecX family; Region: RecX; pfam02631
264201001164	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
264201001165	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
264201001166	RNA binding surface [nucleotide binding]; other site
264201001167	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
264201001168	active site
264201001169	D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not...; Region: Dtyr_deacylase; cd00563
264201001170	putative active site [active]
264201001171	dimerization interface [polypeptide binding]; other site
264201001172	putative tRNAtyr binding site [nucleotide binding]; other site
264201001173	hypothetical protein; Provisional; Region: PRK01064
264201001174	Predicted RNA-binding protein (contains KH domain) [General function prediction only]; Region: COG1837
264201001175	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after...; Region: HPPK; cd00483
264201001176	catalytic center binding site [active]
264201001177	ATP binding site [chemical binding]; other site
264201001178	DAHP synthetase I family; Region: DAHP_synth_1; pfam00793
264201001179	2-dehydro-3-deoxyphosphooctonate aldolase; Provisional; Region: PRK05198
264201001180	ABC-type (unclassified) transport system, ATPase component [General function prediction only]; Region: YhbG; COG1137
264201001181	ATP-binding cassette component of YhbG transport system; Region: ABC_YhbG; cd03218
264201001182	Walker A/P-loop; other site
264201001183	ATP binding site [chemical binding]; other site
264201001184	Q-loop/lid; other site
264201001185	ABC transporter signature motif; other site
264201001186	Walker B; other site
264201001187	D-loop; other site
264201001188	H-loop/switch region; other site
264201001189	Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside...; Region: NDPk_I; cd04413
264201001190	active site
264201001191	multimer interface [polypeptide binding]; other site
264201001192	para-aminobenzoate synthase component II; Provisional; Region: PRK08857
264201001193	Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase; Region: GATase1_Anthranilate_Synthase; cd01743
264201001194	glutamine binding [chemical binding]; other site
264201001195	catalytic triad [active]
264201001196	Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside...; Region: NDPk_I; cd04413
264201001197	active site
264201001198	multimer interface [polypeptide binding]; other site
264201001199	phenylalanyl-tRNA synthetase subunit beta; Reviewed; Region: pheT; PRK00629
264201001200	tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain.  PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate...; Region: tRNA_bind_bactPheRS; cd02796
264201001201	putative tRNA-binding site [nucleotide binding]; other site
264201001202	B3/4 domain; Region: B3_4; pfam03483
264201001203	tRNA synthetase B5 domain; Region: B5; smart00874
264201001204	Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA,  PheRS is an...; Region: PheRS_beta_core; cd00769
264201001205	dimer interface [polypeptide binding]; other site
264201001206	motif 1; other site
264201001207	motif 3; other site
264201001208	motif 2; other site
264201001209	Ferredoxin-fold anticodon binding domain; Region: FDX-ACB; pfam03147
264201001210	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2849
264201001211	Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633
264201001212	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
264201001213	catalytic loop [active]
264201001214	iron binding site [ion binding]; other site
264201001215	SNF2 family N-terminal domain; Region: SNF2_N; pfam00176
264201001216	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
264201001217	ATP binding site [chemical binding]; other site
264201001218	putative Mg++ binding site [ion binding]; other site
264201001219	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
264201001220	nucleotide binding region [chemical binding]; other site
264201001221	ATP-binding site [chemical binding]; other site
264201001222	putative rhodanese-related sulfurtransferase; Provisional; Region: PRK00142
264201001223	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cl00125
264201001224	active site residue [active]
264201001225	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
264201001226	catalytic residues [active]
264201001227	putative cation:proton antiport protein; Provisional; Region: PRK10669
264201001228	Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; cl10482
264201001229	TrkA-N domain; Region: TrkA_N; pfam02254
264201001230	Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]; Region: CspR; COG0219
264201001231	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; Region: FKBP_N; pfam01346
264201001232	FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]; Region: FkpA; COG0545
264201001233	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
264201001234	aspartyl-tRNA synthetase; Validated; Region: aspS; PRK00476
264201001235	EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND)...; Region: EcAspRS_like_N; cd04317
264201001236	dimer interface [polypeptide binding]; other site
264201001237	anticodon binding site; other site
264201001238	Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of...; Region: AspRS_core; cd00777
264201001239	homodimer interface [polypeptide binding]; other site
264201001240	motif 1; other site
264201001241	active site
264201001242	motif 2; other site
264201001243	GAD domain; Region: GAD; pfam02938
264201001244	Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of...; Region: AspRS_core; cd00777
264201001245	motif 3; other site
264201001246	histidyl-tRNA synthetase; Region: hisS; TIGR00442
264201001247	Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for...; Region: HisRS-like_core; cd00773
264201001248	dimer interface [polypeptide binding]; other site
264201001249	motif 1; other site
264201001250	active site
264201001251	motif 2; other site
264201001252	motif 3; other site
264201001253	HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: HisRS_anticodon; cd00859
264201001254	anticodon binding site; other site
264201001255	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
264201001256	phosphopeptide binding site; other site
264201001257	Sugar phosphate permease [Carbohydrate transport and metabolism]; Region: UhpC; COG2271
264201001258	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
264201001259	putative substrate translocation pore; other site
264201001260	DNA polymerase III subunit alpha; Validated; Region: dnaE; PRK05673
264201001261	Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE3; Region: PHP_PolIIIA_DnaE3; cd12113
264201001262	active site
264201001263	PHP Thumb interface [polypeptide binding]; other site
264201001264	metal binding site [ion binding]; metal-binding site
264201001265	DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains...; Region: DnaE_OBF; cd04485
264201001266	generic binding surface I; other site
264201001267	generic binding surface II; other site
264201001268	TPR repeat; Region: TPR_11; pfam13414
264201001269	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201001270	binding surface
264201001271	TPR motif; other site
264201001272	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201001273	binding surface
264201001274	TPR motif; other site
264201001275	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cl02429
264201001276	binding surface
264201001277	TPR motif; other site
264201001278	Histidine kinase-like ATPase domain; Region: HATPase_c_2; pfam13581
264201001279	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075
264201001280	D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]; Region: DacC; COG1686
264201001281	Beta-lactamase enzyme family; Region: Beta-lactamase2; cl17872
264201001282	16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed; Region: ksgA; PRK00274
264201001283	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201001284	S-adenosylmethionine binding site [chemical binding]; other site
264201001285	16S rRNA methyltransferase B; Provisional; Region: PRK14902
264201001286	NOL1/NOP2/sun family putative RNA methylase; Region: nop2p; TIGR00446
264201001287	D-alanyl-alanine synthetase A; Reviewed; Region: ddl; PRK01966
264201001288	D-ala D-ala ligase N-terminus; Region: Dala_Dala_lig_N; pfam01820
264201001289	ATP-grasp domain; Region: ATP-grasp_4; cl17255
264201001290	D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]; Region: DdlA; COG1181
264201001291	D-ala D-ala ligase N-terminus; Region: Dala_Dala_lig_N; pfam01820
264201001292	ATP-grasp domain; Region: ATP-grasp_4; cl17255
264201001293	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
264201001294	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
264201001295	apolipoprotein N-acyltransferase; Reviewed; Region: lnt; PRK00302
264201001296	Apolipoprotein N-acyl transferase (class 9 nitrilases); Region: ALP_N-acyl_transferase; cd07571
264201001297	putative active site [active]
264201001298	catalytic triad [active]
264201001299	putative dimer interface [polypeptide binding]; other site
264201001300	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed; Region: lpxC; PRK13186
264201001301	UDP-3-O-acyl N-acetylglycosamine deacetylase; Region: LpxC; pfam03331
264201001302	FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid...; Region: FabZ; cd01288
264201001303	UDP-N-acetylglucosamine acyltransferase; Provisional; Region: PRK05289
264201001304	UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic...; Region: LbH_UDP-GlcNAc_AT; cd03351
264201001305	active site
264201001306	methionyl-tRNA formyltransferase; Reviewed; Region: fmt; PRK00005
264201001307	Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N; cd08646
264201001308	putative active site [active]
264201001309	substrate binding site [chemical binding]; other site
264201001310	putative cosubstrate binding site; other site
264201001311	catalytic site [active]
264201001312	C-terminal domain of Formyltransferase and other enzymes; Region: Met_tRNA_FMT_C; cd08704
264201001313	substrate binding site [chemical binding]; other site
264201001314	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201001315	SLBB domain; Region: SLBB; pfam10531
264201001316	50S ribosomal protein L3; Validated; Region: rplC; PRK00001
264201001317	50S ribosomal protein L4; Provisional; Region: rplD; PRK05319
264201001318	50S ribosomal protein L23; Reviewed; Region: rplW; PRK05738
264201001319	50S ribosomal protein L2; Validated; Region: rplB; PRK09374
264201001320	Ribosomal Proteins L2, RNA binding domain; Region: Ribosomal_L2; pfam00181
264201001321	Ribosomal Proteins L2, C-terminal domain; Region: Ribosomal_L2_C; pfam03947
264201001322	30S ribosomal protein S19; Reviewed; Region: rpsS; PRK00357
264201001323	Ribosomal protein L22/L17e.  L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit.  It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper...; Region: Ribosomal_L22; cd00336
264201001324	putative translocon binding site; other site
264201001325	protein-rRNA interface [nucleotide binding]; other site
264201001326	ribosomal protein S3, bacterial type; Region: rpsC_bact; TIGR01009
264201001327	K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3  is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel.  The KH...; Region: 30S_S3_KH; cd02412
264201001328	G-X-X-G motif; other site
264201001329	Ribosomal protein S3, C-terminal domain; Region: Ribosomal_S3_C; pfam00189
264201001330	Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with...; Region: Ribosomal_L16_L10e; cd01433
264201001331	23S rRNA interface [nucleotide binding]; other site
264201001332	5S rRNA interface [nucleotide binding]; other site
264201001333	putative antibiotic binding site [chemical binding]; other site
264201001334	L25 interface [polypeptide binding]; other site
264201001335	L27 interface [polypeptide binding]; other site
264201001336	Ribosomal L29 protein/HIP.  L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals.  L29 is located on the surface of the large ribosomal subunit, where it...; Region: Ribosomal_L29_HIP; cd00427
264201001337	23S rRNA interface [nucleotide binding]; other site
264201001338	putative translocon interaction site; other site
264201001339	signal recognition particle (SRP54) interaction site; other site
264201001340	L23 interface [polypeptide binding]; other site
264201001341	trigger factor interaction site; other site
264201001342	30S ribosomal protein S17; Reviewed; Region: rpsQ; PRK05610
264201001343	50S ribosomal protein L14; Validated; Region: rplN; PRK05483
264201001344	50S ribosomal protein L24; Reviewed; Region: rplX; PRK00004
264201001345	KOW motif of Ribosomal Protein L26; Region: KOW_RPL26; cd06089
264201001346	RNA binding site [nucleotide binding]; other site
264201001347	50S ribosomal protein L5; Validated; Region: rplE; PRK00010
264201001348	Ribosomal protein L5; Region: Ribosomal_L5; pfam00281
264201001349	ribosomal L5P family C-terminus; Region: Ribosomal_L5_C; pfam00673
264201001350	30S ribosomal protein S8; Validated; Region: rpsH; PRK00136
264201001351	50S ribosomal protein L6; Validated; Region: rplF; PRK05498
264201001352	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
264201001353	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
264201001354	Ribosomal L18/L5e:  L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA...; Region: Ribosomal_L18_L5e; cd00432
264201001355	5S rRNA interface [nucleotide binding]; other site
264201001356	23S rRNA interface [nucleotide binding]; other site
264201001357	L5 interface [polypeptide binding]; other site
264201001358	30S ribosomal protein S5; Validated; Region: rpsE; PRK00550
264201001359	Ribosomal protein S5, N-terminal domain; Region: Ribosomal_S5; pfam00333
264201001360	Ribosomal protein S5, C-terminal domain; Region: Ribosomal_S5_C; pfam03719
264201001361	50S ribosomal protein L15; Reviewed; Region: rplO; PRK05592
264201001362	preprotein translocase subunit SecY; Reviewed; Region: secY; PRK09204
264201001363	SecY translocase; Region: SecY; pfam00344
264201001364	30S ribosomal protein S13; Validated; Region: rpsM; PRK05179
264201001365	30S ribosomal protein S13; Region: bact_S13; TIGR03631
264201001366	30S ribosomal protein S11; Validated; Region: PRK05309
264201001367	DNA-directed RNA polymerase subunit alpha; Provisional; Region: PRK05182
264201001368	N-terminal domain of the Alpha subunit of Bacterial RNA polymerase; Region: RNAP_alpha_NTD; cd06928
264201001369	alphaNTD homodimer interface [polypeptide binding]; other site
264201001370	alphaNTD - beta interaction site [polypeptide binding]; other site
264201001371	alphaNTD - beta' interaction site [polypeptide binding]; other site
264201001372	Bacterial RNA polymerase, alpha chain C terminal domain; Region: RNA_pol_A_CTD; pfam03118
264201001373	50S ribosomal protein L17; Validated; Region: rplQ; PRK05591
264201001374	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]; Region: GapA; COG0057
264201001375	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Region: Gp_dh_N; pfam00044
264201001376	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; pfam02800
264201001377	CAAX protease self-immunity; Region: Abi; pfam02517
264201001378	Uncharacterized protein family (UPF0158); Region: UPF0158; pfam03682
264201001379	diaminopimelate epimerase; Provisional; Region: dapF; PRK00450
264201001380	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
264201001381	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
264201001382	ATP-dependent Clp protease proteolytic subunit; Reviewed; Region: PRK12553
264201001383	Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017
264201001384	oligomer interface [polypeptide binding]; other site
264201001385	active site residues [active]
264201001386	serine hydroxymethyltransferase; Provisional; Region: PRK13580
264201001387	Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl...; Region: SHMT; cd00378
264201001388	dimer interface [polypeptide binding]; other site
264201001389	active site
264201001390	glycine-pyridoxal phosphate binding site [chemical binding]; other site
264201001391	folate binding site [chemical binding]; other site
264201001392	Starch binding domain; Region: CBM_2; smart01065
264201001393	Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]; Region: COG1579
264201001394	Putative zinc ribbon domain; Region: DUF164; pfam02591
264201001395	CAAX protease self-immunity; Region: Abi; pfam02517
264201001396	GTP cyclohydrolase I; Provisional; Region: folE; PRK09347
264201001397	GTP cyclohydrolase I; Provisional; Region: PLN03044
264201001398	active site
264201001399	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
264201001400	ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488
264201001401	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
264201001402	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
264201001403	ABC transporter; Region: ABC_tran_2; pfam12848
264201001404	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
264201001405	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
264201001406	UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide; Region: Beta4Glucosyltransferase; cd02511
264201001407	putative metal binding site; other site
264201001408	NLPA lipoprotein; Region: Lipoprotein_9; pfam03180
264201001409	ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]; Region: NlpA; COG1464
264201001410	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
264201001411	dimer interface [polypeptide binding]; other site
264201001412	conserved gate region; other site
264201001413	ABC-ATPase subunit interface; other site
264201001414	ATP-binding cassette domain of methionine transporter; Region: ABC_MetN_methionine_transporter; cd03258
264201001415	DL-methionine transporter ATP-binding subunit; Provisional; Region: metN; PRK11153
264201001416	Walker A/P-loop; other site
264201001417	ATP binding site [chemical binding]; other site
264201001418	Q-loop/lid; other site
264201001419	ABC transporter signature motif; other site
264201001420	Walker B; other site
264201001421	D-loop; other site
264201001422	H-loop/switch region; other site
264201001423	This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins; Region: NIL; smart00930
264201001424	site-specific tyrosine recombinase XerC; Reviewed; Region: xerC; PRK00236
264201001425	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
264201001426	active site
264201001427	DNA binding site [nucleotide binding]
264201001428	Int/Topo IB signature motif; other site
264201001429	ribonuclease Z; Region: RNase_Z; TIGR02651
264201001430	Protein of unknown function (DUF3582); Region: DUF3582; pfam12122
264201001431	Rhomboid family; Region: Rhomboid; pfam01694
264201001432	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
264201001433	active site
264201001434	nucleotide binding site [chemical binding]; other site
264201001435	HIGH motif; other site
264201001436	KMSKS motif; other site
264201001437	ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]; Region: Lon; COG0466
264201001438	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201001439	Walker A motif; other site
264201001440	ATP binding site [chemical binding]; other site
264201001441	Walker B motif; other site
264201001442	arginine finger; other site
264201001443	Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362
264201001444	deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional; Region: PRK01286
264201001445	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
264201001446	Zn2+ binding site [ion binding]; other site
264201001447	Mg2+ binding site [ion binding]; other site
264201001448	Phosphohydrolase-associated domain; Region: HD_assoc; pfam13286
264201001449	tRNA threonylcarbamoyl adenosine modification protein YeaZ; Region: T6A_YeaZ; TIGR03725
264201001450	Glycoprotease family; Region: Peptidase_M22; pfam00814
264201001451	Ribosomal protein S21; Region: Ribosomal_S21; cl00529
264201001452	chaperone protein DnaJ; Provisional; Region: PRK14284
264201001453	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
264201001454	HSP70 interaction site [polypeptide binding]; other site
264201001455	Zinc finger domain of DnaJ and HSP40; Region: DnaJ_zf; cd10719
264201001456	Zn binding sites [ion binding]; other site
264201001457	C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cd10747
264201001458	dimer interface [polypeptide binding]; other site
264201001459	Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]; Region: PhnP; COG1235
264201001460	Domain of unknown function (DUF4117); Region: DUF4117; pfam13491
264201001461	DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]; Region: FtsK; COG1674
264201001462	FtsK/SpoIIIE family; Region: FtsK_SpoIIIE; pfam01580
264201001463	Ftsk gamma domain; Region: Ftsk_gamma; pfam09397
264201001464	Bacitracin resistance protein BacA; Region: BacA; pfam02673
264201001465	Competence protein; Region: Competence; pfam03772
264201001466	SMI1 / KNR4 family; Region: SMI1_KNR4; smart00860
264201001467	HPr kinase/phosphorylase; Provisional; Region: PRK05428
264201001468	HPr Serine kinase N terminus; Region: Hpr_kinase_N; pfam02603
264201001469	HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent...; Region: HprK_C; cd01918
264201001470	Hpr binding site; other site
264201001471	active site
264201001472	homohexamer subunit interaction site [polypeptide binding]; other site
264201001473	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
264201001474	dimerization domain swap beta strand [polypeptide binding]; other site
264201001475	regulatory protein interface [polypeptide binding]; other site
264201001476	active site
264201001477	regulatory phosphorylation site [posttranslational modification]; other site
264201001478	Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]; Region: PtsA; COG1080
264201001479	PEP-utilising enzyme, N-terminal; Region: PEP-utilisers_N; pfam05524
264201001480	PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; pfam00391
264201001481	PEP-utilising enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
264201001482	hypothetical protein; Validated; Region: PRK00153
264201001483	DNA polymerase III subunits gamma and tau; Validated; Region: PRK06305
264201001484	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201001485	Walker A motif; other site
264201001486	ATP binding site [chemical binding]; other site
264201001487	Walker B motif; other site
264201001488	arginine finger; other site
264201001489	DNA polymerase III subunits gamma and tau domain III; Region: DNA_pol3_gamma3; pfam12169
264201001490	RmuC family; Region: RmuC; pfam02646
264201001491	Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]; Region: COG0606
264201001492	Subunit ChlI of Mg-chelatase; Region: ChlI; pfam13541
264201001493	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201001494	Walker A motif; other site
264201001495	ATP binding site [chemical binding]; other site
264201001496	Walker B motif; other site
264201001497	Magnesium chelatase, subunit ChlI; Region: Mg_chelatase_2; pfam13335
264201001498	Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Region: Ferritin_like; cd00657
264201001499	dinuclear metal binding motif [ion binding]; other site
264201001500	Bacterial SH3 domain homologues; Region: SH3b; smart00287
264201001501	NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]; Region: COG1875
264201001502	PIN domain of bacterial Smg6-like homologs with PhoH-like ATPase domains; Region: PIN_PhoHL-ATPase; cd09883
264201001503	putative active site [active]
264201001504	PhoH-like protein; Region: PhoH; pfam02562
264201001505	TLC ATP/ADP transporter; Region: TLC; cl03940
264201001506	MepB protein; Region: MepB; pfam08877
264201001507	Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_19; cd04678
264201001508	nudix motif; other site
264201001509	Acetyltransferase (GNAT) domain; Region: Acetyltransf_10; pfam13673
264201001510	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
264201001511	Coenzyme A binding pocket [chemical binding]; other site
264201001512	Nucleotidyl transferase of unknown function (DUF1814); Region: DUF1814; pfam08843
264201001513	Domain of unknown function (DUF4095); Region: DUF4095; pfam13338
264201001514	Protein of unknown function (DUF2992); Region: DUF2992; pfam11208
264201001515	isoleucyl-tRNA synthetase; Reviewed; Region: ileS; PRK06039
264201001516	catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818
264201001517	HIGH motif; other site
264201001518	catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818
264201001519	active site
264201001520	KMSKS motif; other site
264201001521	Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases; Region: Anticodon_Ia_Ile_ABEc; cd07961
264201001522	tRNA binding surface [nucleotide binding]; other site
264201001523	anticodon binding site; other site
264201001524	Antitoxin Phd_YefM, type II toxin-antitoxin system; Region: PhdYeFM_antitox; pfam02604
264201001525	signal peptidase I, bacterial type; Region: sigpep_I_bact; TIGR02227
264201001526	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
264201001527	Catalytic site [active]
264201001528	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
264201001529	Uncharacterized ACR, YggU family COG1872; Region: DUF167; cl00811
264201001530	Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]; Region: COG2939
264201001531	Serine carboxypeptidase; Region: Peptidase_S10; cl08270
264201001532	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cl14786
264201001533	Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport...; Region: FNR_like; cl06868
264201001534	Uncharacterized conserved protein [Function unknown]; Region: COG3189
264201001535	Pentapeptide repeats (9 copies); Region: Pentapeptide_4; pfam13599
264201001536	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
264201001537	ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488
264201001538	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
264201001539	Walker A/P-loop; other site
264201001540	ATP binding site [chemical binding]; other site
264201001541	Q-loop/lid; other site
264201001542	ABC transporter signature motif; other site
264201001543	Walker B; other site
264201001544	D-loop; other site
264201001545	H-loop/switch region; other site
264201001546	ABC transporter; Region: ABC_tran_2; pfam12848
264201001547	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
264201001548	Domain of unknown function (DUF4095); Region: DUF4095; pfam13338
264201001549	Nucleotidyl transferase of unknown function (DUF1814); Region: DUF1814; pfam08843
264201001550	Adenosine deaminase [Nucleotide transport and metabolism]; Region: Ada; COG2169
264201001551	Acetyltransferase (isoleucine patch superfamily) [General function prediction only]; Region: WbbJ; COG0110
264201001552	Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and...; Region: LbH_XAT; cd03349
264201001553	trimer interface [polypeptide binding]; other site
264201001554	active site
264201001555	substrate binding site [chemical binding]; other site
264201001556	CoA binding site [chemical binding]; other site
264201001557	Fic/DOC family; Region: Fic; pfam02661
264201001558	YfdX protein; Region: YfdX; pfam10938
264201001559	Transposase; Region: HTH_Tnp_1; cl17663
264201001560	HTH-like domain; Region: HTH_21; pfam13276
264201001561	Integrase core domain; Region: rve; pfam00665
264201001562	Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II; Region: CPT; cl17391
264201001563	Chloramphenicol (Cm) binding site [chemical binding]; other site
264201001564	Alpha/beta hydrolase family; Region: Abhydrolase_5; pfam12695
264201001565	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3012
264201001566	Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II)...; Region: Pep_deformylase; cd00487
264201001567	active site
264201001568	catalytic residues [active]
264201001569	metal binding site [ion binding]; metal-binding site
264201001570	thioesterase domain, putative; Region: yiiD_Cterm; TIGR02447
264201001571	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
264201001572	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
264201001573	active site
264201001574	catalytic tetrad [active]
264201001575	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
264201001576	putative substrate translocation pore; other site
264201001577	Major Facilitator Superfamily; Region: MFS_1; pfam07690
264201001578	methionine aminopeptidase; Provisional; Region: PRK08671
264201001579	A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity...; Region: APP_MetAP; cl00279
264201001580	active site
264201001581	RF-1 domain; Region: RF-1; pfam00472
264201001582	Sulfite exporter TauE/SafE; Region: TauE; pfam01925
264201001583	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
264201001584	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
264201001585	HlyD family secretion protein; Region: HlyD_3; pfam13437
264201001586	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Region: 2A0602; TIGR00915
264201001587	Protein export membrane protein; Region: SecD_SecF; cl14618
264201001588	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
264201001589	Haloacid dehalogenase-like hydrolase; Region: HAD_2; pfam13419
264201001590	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
264201001591	motif II; other site
264201001592	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
264201001593	active site
264201001594	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
264201001595	This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801
264201001596	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
264201001597	UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs; Region: UDP_G4E_5_SDR_e; cd05264
264201001598	putative NAD(P) binding site [chemical binding]; other site
264201001599	active site
264201001600	putative substrate binding site [chemical binding]; other site
264201001601	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; Region: Oxidored_q4; cl00535
264201001602	NADH dehydrogenase subunit B; Validated; Region: PRK06411
264201001603	Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Region: Complex1_30kDa; cl16917
264201001604	NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]; Region: NuoD; COG0649
264201001605	NADH dehydrogenase subunit D; Validated; Region: PRK06075
264201001606	Respiratory-chain NADH dehydrogenase 24 Kd subunit; Region: Complex1_24kDa; pfam01257
264201001607	TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes; Region: TRX_Fd_NuoE; cd03064
264201001608	putative dimer interface [polypeptide binding]; other site
264201001609	[2Fe-2S] cluster binding site [ion binding]; other site
264201001610	NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]; Region: NuoF; COG1894
264201001611	SLBB domain; Region: SLBB; pfam10531
264201001612	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Region: NADH_4Fe-4S; pfam10589
264201001613	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
264201001614	NADH-quinone oxidoreductase, chain G; Region: NuoG; TIGR01973
264201001615	catalytic loop [active]
264201001616	iron binding site [ion binding]; other site
264201001617	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Region: NADH-G_4Fe-4S_3; pfam10588
264201001618	Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a  large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and...; Region: Molybdopterin-Binding; cl09928
264201001619	molybdopterin cofactor binding site; other site
264201001620	Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a  large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum-...; Region: MopB_CT; cd02775
264201001621	NADH:ubiquinone oxidoreductase subunit H; Provisional; Region: PRK06076
264201001622	Formate hydrogenlyase subunit 4 [Energy production and conversion]; Region: HyfC; COG0650
264201001623	NADH-quinone oxidoreductase, chain I; Region: NuoI; TIGR01971
264201001624	4Fe-4S binding domain; Region: Fer4; pfam00037
264201001625	4Fe-4S binding domain; Region: Fer4; pfam00037
264201001626	NADH:ubiquinone oxidoreductase subunit J; Provisional; Region: PRK06638
264201001627	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; Region: Oxidored_q2; cl00492
264201001628	NADH:ubiquinone oxidoreductase subunit L; Reviewed; Region: PRK06590
264201001629	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; Region: Oxidored_q1_N; pfam00662
264201001630	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
264201001631	NADH:ubiquinone oxidoreductase subunit M; Reviewed; Region: PRK05846
264201001632	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
264201001633	NADH:ubiquinone oxidoreductase subunit N; Provisional; Region: PRK05777
264201001634	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
264201001635	Peptidase family M48; Region: Peptidase_M48; pfam01435
264201001636	Protein of unknown function (DUF1207); Region: DUF1207; pfam06727
264201001637	Possible lysine decarboxylase; Region: Lysine_decarbox; cl00695
264201001638	Uncharacterized protein family (UPF0160); Region: UPF0160; pfam03690
264201001639	Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a...; Region: PKCI_related; cd01276
264201001640	nucleotide binding site/active site [active]
264201001641	HIT family signature motif; other site
264201001642	catalytic residue [active]
264201001643	Isochorismatase family; Region: Isochorismatase; pfam00857
264201001644	Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cl00220
264201001645	catalytic triad [active]
264201001646	conserved cis-peptide bond; other site
264201001647	HEAT repeats; Region: HEAT_2; pfam13646
264201001648	HEAT repeats; Region: HEAT_2; pfam13646
264201001649	HEAT repeats; Region: HEAT_2; pfam13646
264201001650	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
264201001651	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
264201001652	dimer interface [polypeptide binding]; other site
264201001653	conserved gate region; other site
264201001654	ABC-ATPase subunit interface; other site
264201001655	NMT1/THI5 like; Region: NMT1; pfam09084
264201001656	Xaa-Pro aminopeptidase [Amino acid transport and metabolism]; Region: PepP; COG0006
264201001657	A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity...; Region: APP_MetAP; cl00279
264201001658	active site
264201001659	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
264201001660	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
264201001661	Walker A/P-loop; other site
264201001662	ATP binding site [chemical binding]; other site
264201001663	Q-loop/lid; other site
264201001664	ABC transporter signature motif; other site
264201001665	Walker B; other site
264201001666	D-loop; other site
264201001667	H-loop/switch region; other site
264201001668	Tryptophan/tyrosine permease family; Region: Trp_Tyr_perm; cl17316
264201001669	aromatic amino acid transport protein; Region: araaP; TIGR00837
264201001670	Domain of unknown function (DUF2760); Region: DUF2760; pfam10816
264201001671	Nucleotide-binding domain of the HSP70 family; Region: HSP70_NBD; cd10170
264201001672	nucleotide binding site [chemical binding]; other site
264201001673	putative NEF/HSP70 interaction site [polypeptide binding]; other site
264201001674	SBD interface [polypeptide binding]; other site
264201001675	Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]; Region: sufE; COG2166
264201001676	S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451
264201001677	rRNA binding site [nucleotide binding]; other site
264201001678	predicted 30S ribosome binding site; other site
264201001679	elongation factor Tu; Reviewed; Region: PRK12735
264201001680	Elongation Factor Tu (EF-Tu) GTP-binding proteins; Region: EF_Tu; cd01884
264201001681	G1 box; other site
264201001682	GEF interaction site [polypeptide binding]; other site
264201001683	GTP/Mg2+ binding site [chemical binding]; other site
264201001684	Switch I region; other site
264201001685	G2 box; other site
264201001686	G3 box; other site
264201001687	Switch II region; other site
264201001688	G4 box; other site
264201001689	G5 box; other site
264201001690	EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697
264201001691	Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707
264201001692	Antibiotic Binding Site [chemical binding]; other site
264201001693	SecE/Sec61-gamma subunits of protein translocation complex; Region: SecE; pfam00584
264201001694	N-Utilization Substance G (NusG) N-terminal (NGN) domain Superfamily; Region: NGN; cl02766
264201001695	transcription antitermination protein NusG; Validated; Region: nusG; PRK05609
264201001696	Bacterial N-Utilization Substance G (NusG) N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1; cd09891
264201001697	putative homodimer interface [polypeptide binding]; other site
264201001698	NusG contains an NGN domain at its N-terminus and KOW motif at its C-terminus; Region: KOW_NusG; cd06091
264201001699	heterodimer interface [polypeptide binding]; other site
264201001700	homodimer interface [polypeptide binding]; other site
264201001701	50S ribosomal protein L11; Validated; Region: rplK; PRK00140
264201001702	Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal...; Region: Ribosomal_L11; cd00349
264201001703	23S rRNA interface [nucleotide binding]; other site
264201001704	L7/L12 interface [polypeptide binding]; other site
264201001705	putative thiostrepton binding site; other site
264201001706	L25 interface [polypeptide binding]; other site
264201001707	Ribosomal protein L1.  The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA.  In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds...; Region: Ribosomal_L1; cd00403
264201001708	mRNA/rRNA interface [nucleotide binding]; other site
264201001709	Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein...; Region: Ribosomal_L10; cd05797
264201001710	23S rRNA interface [nucleotide binding]; other site
264201001711	Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site
264201001712	Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of...; Region: Ribosomal_L7_L12; cd00387
264201001713	core dimer interface [polypeptide binding]; other site
264201001714	peripheral dimer interface [polypeptide binding]; other site
264201001715	L10 interface [polypeptide binding]; other site
264201001716	L11 interface [polypeptide binding]; other site
264201001717	putative EF-Tu interaction site [polypeptide binding]; other site
264201001718	putative EF-G interaction site [polypeptide binding]; other site
264201001719	RNA polymerase beta subunit; Region: RNA_pol_Rpb2_1; pfam04563
264201001720	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cl17585
264201001721	RNA polymerase Rpb2, domain 2; Region: RNA_pol_Rpb2_2; pfam04561
264201001722	RNA polymerase beta subunit; Provisional; Region: rpoB; CHL00207
264201001723	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
264201001724	RPB11 interaction site [polypeptide binding]; other site
264201001725	RPB12 interaction site [polypeptide binding]; other site
264201001726	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
264201001727	RPB3 interaction site [polypeptide binding]; other site
264201001728	RPB1 interaction site [polypeptide binding]; other site
264201001729	RPB11 interaction site [polypeptide binding]; other site
264201001730	RPB10 interaction site [polypeptide binding]; other site
264201001731	RNA polymerase Rpb1, domain 1; Region: RNA_pol_Rpb1_1; pfam04997
264201001732	DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]; Region: RpoC; COG0086
264201001733	RNA polymerase I subunit A N-terminus; Region: RPOLA_N; smart00663
264201001734	RNA polymerase Rpb1, domain 3; Region: RNA_pol_Rpb1_3; pfam04983
264201001735	RNA polymerase Rpb1, domain 4; Region: RNA_pol_Rpb1_4; pfam05000
264201001736	Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429
264201001737	Rpb1 - Rpb6 interaction site [polypeptide binding]; other site
264201001738	Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429
264201001739	Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain; Region: RNAP_beta'_C; cd02655
264201001740	DNA binding site [nucleotide binding]
264201001741	Rpb1 (beta') - Rpb2 (beta) interaction site [polypeptide binding]; other site
264201001742	Glycine zipper 2TM domain; Region: Rick_17kDa_Anti; cl10470
264201001743	Organic solvent tolerance protein; Region: OstA_C; pfam04453
264201001744	HEAT repeats; Region: HEAT_2; pfam13646
264201001745	HEAT repeats; Region: HEAT_2; pfam13646
264201001746	Maf-like protein; Region: Maf; pfam02545
264201001747	Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555
264201001748	active site
264201001749	dimer interface [polypeptide binding]; other site
264201001750	Domain of unknown function DUF11; Region: DUF11; pfam01345
264201001751	Domain of unknown function DUF11; Region: DUF11; cl17728
264201001752	NAD kinase [Coenzyme metabolism]; Region: nadF; COG0061
264201001753	inorganic polyphosphate/ATP-NAD kinase; Provisional; Region: ppnK; PRK02231
264201001754	1-deoxy-D-xylulose-5-phosphate synthase; Provisional; Region: PRK05444
264201001755	Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products...; Region: TPP_DXS; cd02007
264201001756	TPP-binding site; other site
264201001757	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
264201001758	PYR/PP interface [polypeptide binding]; other site
264201001759	dimer interface [polypeptide binding]; other site
264201001760	TPP binding site [chemical binding]; other site
264201001761	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
264201001762	exodeoxyribonuclease VII small subunit; Provisional; Region: PRK00977
264201001763	exodeoxyribonuclease VII large subunit; Reviewed; Region: xseA; PRK00286
264201001764	ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a...; Region: ExoVII_LU_OBF; cd04489
264201001765	generic binding surface II; other site
264201001766	generic binding surface I; other site
264201001767	Na+/alanine symporter [Amino acid transport and metabolism]; Region: AlsT; COG1115
264201001768	Sodium:alanine symporter family; Region: Na_Ala_symp; cl00548
264201001769	Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases; Region: Endonuclease_V; cd06559
264201001770	Active_site [active]
264201001771	Bacterial protein of unknown function (DUF948); Region: DUF948; pfam06103
264201001772	YtxH-like protein; Region: YtxH; pfam12732
264201001773	YtxH-like protein; Region: YtxH; cl02079
264201001774	Zn-dependent carboxypeptidase [Amino acid transport and metabolism]; Region: COG2317
264201001775	Peptidase family M32 includes thermostable carboxypeptidases TaqCP and PfuCP; Region: M32_Taq; cd06460
264201001776	active site
264201001777	Zn binding site [ion binding]; other site
264201001778	putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional; Region: PRK11930
264201001779	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
264201001780	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
264201001781	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase; Region: PLPDE_III_AR; cd00430
264201001782	active site
264201001783	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
264201001784	dimer interface [polypeptide binding]; other site
264201001785	substrate binding site [chemical binding]; other site
264201001786	catalytic residues [active]
264201001787	CsbD-like; Region: CsbD; cl17424
264201001788	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
264201001789	Protein export membrane protein; Region: SecD_SecF; cl14618
264201001790	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
264201001791	HlyD family secretion protein; Region: HlyD_3; pfam13437
264201001792	type I secretion outer membrane protein, TolC family; Region: type_I_sec_TolC; TIGR01844
264201001793	Predicted permeases [General function prediction only]; Region: COG0795
264201001794	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
264201001795	Predicted permeases [General function prediction only]; Region: COG0795
264201001796	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
264201001797	Domain of unknown function (DUF4339); Region: DUF4339; pfam14237
264201001798	N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases...; Region: PP-ATPase; cd01992
264201001799	tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]; Region: MesJ; COG0037
264201001800	ATP-dependent metalloprotease FtsH; Region: FtsH_fam; TIGR01241
264201001801	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201001802	Walker A motif; other site
264201001803	ATP binding site [chemical binding]; other site
264201001804	Walker B motif; other site
264201001805	arginine finger; other site
264201001806	Peptidase family M41; Region: Peptidase_M41; pfam01434
264201001807	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
264201001808	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761
264201001809	active site
264201001810	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
264201001811	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761
264201001812	active site
264201001813	Polyribonucleotide nucleotidyltransferase, repeat 1; Region: RNase_PH_PNPase_1; cd11363
264201001814	RNase E interface [polypeptide binding]; other site
264201001815	polyribonucleotide nucleotidyltransferase; Region: polynuc_phos; TIGR03591
264201001816	trimer interface [polypeptide binding]; other site
264201001817	Polyribonucleotide nucleotidyltransferase, RNA binding domain; Region: PNPase; pfam03726
264201001818	Polyribonucleotide nucleotidyltransferase, repeat 2; Region: RNase_PH_PNPase_2; cd11364
264201001819	RNase E interface [polypeptide binding]; other site
264201001820	trimer interface [polypeptide binding]; other site
264201001821	active site
264201001822	Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to...; Region: PNPase_KH; cd02393
264201001823	putative nucleic acid binding region [nucleotide binding]; other site
264201001824	G-X-X-G motif; other site
264201001825	S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase  is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA; Region: S1_PNPase; cd04472
264201001826	RNA binding site [nucleotide binding]; other site
264201001827	domain interface; other site
264201001828	Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome; Region: Ribosomal_S15p_S13e; cd00353
264201001829	16S/18S rRNA binding site [nucleotide binding]; other site
264201001830	S13e-L30e interaction site [polypeptide binding]; other site
264201001831	25S rRNA binding site [nucleotide binding]; other site
264201001832	DDE superfamily endonuclease; Region: DDE_3; pfam13358
264201001833	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3335
264201001834	Transposase; Region: HTH_Tnp_IS630; pfam01710
264201001835	Homeodomain-like domain; Region: HTH_23; cl17451
264201001836	Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan...; Region: Trp-synth-beta_II; cl00342
264201001837	Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285
264201001838	nucleoside/Zn binding site; other site
264201001839	dimer interface [polypeptide binding]; other site
264201001840	catalytic motif [active]
264201001841	50S ribosomal protein L31 type B; Reviewed; Region: rpmE2; PRK01678
264201001842	peptide chain release factor 1; Validated; Region: prfA; PRK00591
264201001843	PCRF domain; Region: PCRF; pfam03462
264201001844	RF-1 domain; Region: RF-1; pfam00472
264201001845	protein-(glutamine-N5) methyltransferase, release factor-specific; Region: RF_mod_PrmC; TIGR03534
264201001846	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201001847	S-adenosylmethionine binding site [chemical binding]; other site
264201001848	signal recognition particle protein; Provisional; Region: PRK10867
264201001849	SRP54-type protein, helical bundle domain; Region: SRP54_N; smart00963
264201001850	The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115
264201001851	P loop; other site
264201001852	GTP binding site [chemical binding]; other site
264201001853	Signal peptide binding domain; Region: SRP_SPB; pfam02978
264201001854	Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Region: RpsP; COG0228
264201001855	tRNA (guanine-N(1)-)-methyltransferase; Reviewed; Region: trmD; PRK00026
264201001856	50S ribosomal protein L19; Provisional; Region: rplS; PRK05338
264201001857	bacterial Ribonuclease HII-like; Region: RNase_HII_bacteria_HII_like; cd07182
264201001858	RNA/DNA hybrid binding site [nucleotide binding]; other site
264201001859	active site
264201001860	hypothetical protein; Provisional; Region: PRK11820
264201001861	YicC-like family, N-terminal region; Region: YicC_N; pfam03755
264201001862	Domain of unknown function (DUF1732); Region: DUF1732; pfam08340
264201001863	Guanylate kinase [Nucleotide transport and metabolism]; Region: Gmk; COG0194
264201001864	Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine...; Region: GMPK; cd00071
264201001865	catalytic site [active]
264201001866	G-X2-G-X-G-K; other site
264201001867	RNA polymerase Rpb6; Region: RNA_pol_Rpb6; cl14651
264201001868	methionyl-tRNA synthetase; Reviewed; Region: metG; PRK00133
264201001869	catalytic core domain of methioninyl-tRNA synthetases; Region: MetRS_core; cd00814
264201001870	active site
264201001871	HIGH motif; other site
264201001872	KMSKS motif; other site
264201001873	Anticodon-binding domain of methionyl tRNA synthetases; Region: Anticodon_Ia_Met; cd07957
264201001874	tRNA binding surface [nucleotide binding]; other site
264201001875	anticodon binding site; other site
264201001876	tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins.  This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties.  MetRS aminoacylates methionine...; Region: tRNA_bind_EcMetRS_like; cd02800
264201001877	dimer interface [polypeptide binding]; other site
264201001878	putative tRNA-binding site [nucleotide binding]; other site
264201001879	50S ribosomal protein L28; Reviewed; Region: rpmB; PRK00359
264201001880	aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated; Region: gatB; PRK05477
264201001881	GatB/GatE catalytic domain; Region: GatB_N; pfam02934
264201001882	GatB domain; Region: GatB_Yqey; pfam02637
264201001883	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]; Region: GatA; COG0154
264201001884	aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed; Region: gatA; PRK00012
264201001885	aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed; Region: gatC; PRK00034
264201001886	Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]; Region: PhrB; COG0415
264201001887	DNA photolyase; Region: DNA_photolyase; pfam00875
264201001888	TIGR01777 family protein; Region: yfcH
264201001889	atypical (a) SDRs, subgroup 8; Region: SDR_a8; cd05242
264201001890	putative NAD(P) binding site [chemical binding]; other site
264201001891	putative active site [active]
264201001892	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201001893	Animal heme peroxidases and related proteins; Region: An_peroxidase_like; cl14561
264201001894	substrate binding site [chemical binding]; other site
264201001895	heme binding site [chemical binding]; other site
264201001896	Ubiquitin carboxyl-terminal hydrolase; Region: UCH; pfam00443
264201001897	Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly...; Region: Peptidase_C19; cl02553
264201001898	active site
264201001899	Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly...; Region: Peptidase_C19; cl02553
264201001900	active site
264201001901	ATPase involved in DNA repair [DNA replication, recombination, and repair]; Region: RecN; COG0497
264201001902	ATP-binding cassette domain of RecN; Region: ABC_RecN; cd03241
264201001903	Walker A/P-loop; other site
264201001904	ATP binding site [chemical binding]; other site
264201001905	Q-loop/lid; other site
264201001906	ATP-binding cassette domain of RecN; Region: ABC_RecN; cd03241
264201001907	ABC transporter signature motif; other site
264201001908	Walker B; other site
264201001909	D-loop; other site
264201001910	H-loop/switch region; other site
264201001911	ribonuclease HIII; Provisional; Region: PRK00996
264201001912	Domain of unknown function (DUF3378); Region: DUF3378; pfam11858
264201001913	bacterial Ribonuclease HIII-like; Region: RNase_HII_bacteria_HIII_like; cd06590
264201001914	RNA/DNA hybrid binding site [nucleotide binding]; other site
264201001915	active site
264201001916	Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]; Region: COG1426
264201001917	Helix-turn-helix domain; Region: HTH_25; pfam13413
264201001918	Domain of unknown function (DUF368); Region: DUF368; pfam04018
264201001919	Domain of unknown function (DUF368); Region: DUF368; pfam04018
264201001920	tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021
264201001921	Eukaryotic and bacterial pseudouridine synthases similar to E.  coli TruA; Region: PseudoU_synth_EcTruA; cd02570
264201001922	dimerization interface 3.5A [polypeptide binding]; other site
264201001923	active site
264201001924	MarC family integral membrane protein; Region: MarC; cl00919
264201001925	MarC family integral membrane protein; Region: MarC; pfam01914
264201001926	LL-diaminopimelate aminotransferase; Region: DAPAT_plant; TIGR03542
264201001927	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
264201001928	pyridoxal 5'-phosphate binding site [chemical binding]; other site
264201001929	homodimer interface [polypeptide binding]; other site
264201001930	catalytic residue [active]
264201001931	Dihydrodipicolinate synthase (DHDPS); Region: DHDPS; cd00950
264201001932	dihydrodipicolinate synthase; Region: dapA; TIGR00674
264201001933	dimer interface [polypeptide binding]; other site
264201001934	active site
264201001935	catalytic residue [active]
264201001936	dihydrodipicolinate reductase; Provisional; Region: PRK00048
264201001937	Dihydrodipicolinate reductase, N-terminus; Region: DapB_N; pfam01113
264201001938	Dihydrodipicolinate reductase, C-terminus; Region: DapB_C; pfam05173
264201001939	Putative catalytic domain, repeat 1, of uncharacterized hypothetical proteins similar to Nuc, an endonuclease from Salmonella typhimurium; Region: PLDc_Nuc_like_unchar1_1; cd09172
264201001940	Phosphatidylserine/phosphatidylglycerophosphate/car diolipin synthases and related enzymes [Lipid metabolism]; Region: Cls; COG1502
264201001941	putative active site [active]
264201001942	catalytic site [active]
264201001943	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
264201001944	putative active site [active]
264201001945	catalytic site [active]
264201001946	helicase, putative, RecD/TraA family; Region: recD_rel; TIGR01448
264201001947	AAA domain; Region: AAA_30; pfam13604
264201001948	Family description; Region: UvrD_C_2; pfam13538
264201001949	DNA primase; Validated; Region: dnaG; PRK05667
264201001950	CHC2 zinc finger; Region: zf-CHC2; pfam01807
264201001951	DNA primase catalytic core, N-terminal domain; Region: Toprim_N; pfam08275
264201001952	TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG...; Region: TOPRIM_DnaG_primases; cd03364
264201001953	active site
264201001954	metal binding site [ion binding]; metal-binding site
264201001955	interdomain interaction site; other site
264201001956	DnaB-helicase binding domain of primase; Region: DnaB_bind; pfam10410
264201001957	Protein of unknown function, DUF393; Region: DUF393; pfam04134
264201001958	glycyl-tRNA synthetase; Provisional; Region: PRK14908
264201001959	Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the...; Region: GlyRS_alpha_core; cd00733
264201001960	dimer interface [polypeptide binding]; other site
264201001961	motif 1; other site
264201001962	active site
264201001963	motif 2; other site
264201001964	motif 3; other site
264201001965	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
264201001966	Predicted Fe-S-cluster redox enzyme [General function prediction only]; Region: COG0820
264201001967	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
264201001968	FeS/SAM binding site; other site
264201001969	excinuclease ABC subunit C; Validated; Region: uvrC; PRK00558
264201001970	Catalytic GIY-YIG domain of nucleotide excision repair endonucleases UvrC, Cho, and similar proteins; Region: GIY-YIG_UvrC_Cho; cd10434
264201001971	GIY-YIG motif/motif A; other site
264201001972	active site
264201001973	catalytic site [active]
264201001974	putative DNA binding site [nucleotide binding]; other site
264201001975	metal binding site [ion binding]; metal-binding site
264201001976	UvrC Helix-hairpin-helix N-terminal; Region: UvrC_HhH_N; pfam08459
264201001977	threonyl-tRNA synthetase; Reviewed; Region: thrS; PRK12305
264201001978	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
264201001979	motif 1; other site
264201001980	dimer interface [polypeptide binding]; other site
264201001981	active site
264201001982	motif 3; other site
264201001983	HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for...; Region: HGTP_anticodon; cl00266
264201001984	anticodon binding site; other site
264201001985	translation initiation factor IF-3; Reviewed; Region: infC; PRK00028
264201001986	Translation initiation factor IF-3, N-terminal domain; Region: IF3_N; pfam05198
264201001987	Translation initiation factor IF-3, C-terminal domain; Region: IF3_C; pfam00707
264201001988	50S ribosomal protein L35; Reviewed; Region: rpmI; PRK00172
264201001989	Ribosomal protein L20; Region: Ribosomal_L20; cd07026
264201001990	23S rRNA binding site [nucleotide binding]; other site
264201001991	L21 binding site [polypeptide binding]; other site
264201001992	L13 binding site [polypeptide binding]; other site
264201001993	phenylalanyl-tRNA synthetase subunit alpha; Validated; Region: pheS; PRK00488
264201001994	Aminoacyl tRNA synthetase class II, N-terminal domain; Region: Phe_tRNA-synt_N; pfam02912
264201001995	Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible...; Region: PheRS_alpha_core; cd00496
264201001996	dimer interface [polypeptide binding]; other site
264201001997	motif 1; other site
264201001998	active site
264201001999	motif 2; other site
264201002000	motif 3; other site
264201002001	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
264201002002	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
264201002003	RNA binding surface [nucleotide binding]; other site
264201002004	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
264201002005	active site
264201002006	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
264201002007	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
264201002008	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
264201002009	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
264201002010	Sel1-like repeats; Region: SEL1; smart00671
264201002011	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
264201002012	Sel1-like repeats; Region: SEL1; smart00671
264201002013	Sel1-like repeats; Region: SEL1; smart00671
264201002014	Sel1-like repeats; Region: SEL1; smart00671
264201002015	Sel1-like repeats; Region: SEL1; smart00671
264201002016	Sel1-like repeats; Region: SEL1; smart00671
264201002017	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
264201002018	Sel1-like repeats; Region: SEL1; smart00671
264201002019	Sel1-like repeats; Region: SEL1; smart00671
264201002020	Sel1 repeat; Region: Sel1; cl02723
264201002021	Sel1-like repeats; Region: SEL1; smart00671
264201002022	Sel1-like repeats; Region: SEL1; smart00671
264201002023	Sel1-like repeats; Region: SEL1; smart00671
264201002024	Sel1-like repeats; Region: SEL1; smart00671
264201002025	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
264201002026	Sel1-like repeats; Region: SEL1; smart00671
264201002027	Sel1-like repeats; Region: SEL1; smart00671
264201002028	Sel1-like repeats; Region: SEL1; smart00671
264201002029	Sel1-like repeats; Region: SEL1; smart00671
264201002030	Sel1-like repeats; Region: SEL1; smart00671
264201002031	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
264201002032	Sel1-like repeats; Region: SEL1; smart00671
264201002033	Sel1-like repeats; Region: SEL1; smart00671
264201002034	Sel1-like repeats; Region: SEL1; smart00671
264201002035	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
264201002036	Sel1-like repeats; Region: SEL1; smart00671
264201002037	Sel1-like repeats; Region: SEL1; smart00671
264201002038	Sel1-like repeats; Region: SEL1; smart00671
264201002039	Sel1-like repeats; Region: SEL1; smart00671
264201002040	Sel1-like repeats; Region: SEL1; smart00671
264201002041	Sel1-like repeats; Region: SEL1; smart00671
264201002042	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
264201002043	Sel1-like repeats; Region: SEL1; smart00671
264201002044	Sel1-like repeats; Region: SEL1; smart00671
264201002045	Sel1-like repeats; Region: SEL1; smart00671
264201002046	Sel1-like repeats; Region: SEL1; smart00671
264201002047	Sel1-like repeats; Region: SEL1; smart00671
264201002048	Sel1-like repeats; Region: SEL1; smart00671
264201002049	Sel1-like repeats; Region: SEL1; smart00671
264201002050	Sel1-like repeats; Region: SEL1; smart00671
264201002051	Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]; Region: EmrE; COG2076
264201002052	Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+...; Region: Nudix_Hydrolase; cl00447
264201002053	nudix motif; other site
264201002054	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) N-terminal tandem-domain of MazG proteins from Escherichia coli and bacterial homologs; Region: NTP-PPase_MazG_Nterm; cd11528
264201002055	homodimer interface [polypeptide binding]; other site
264201002056	MazG family protein; Region: mazG; TIGR00444
264201002057	metal binding site [ion binding]; metal-binding site
264201002058	CAAX protease self-immunity; Region: Abi; pfam02517
264201002059	SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate...; Region: SERPIN; cd00172
264201002060	reactive center loop; other site
264201002061	Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence...; Region: PP2Cc; cd00143
264201002062	Protein phosphatase 2C; Region: PP2C; pfam00481
264201002063	active site
264201002064	Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]; Region: NifS; COG1104
264201002065	cysteine desulfurase NifS; Region: FeS_nifS; TIGR03402
264201002066	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
264201002067	catalytic residue [active]
264201002068	Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+...; Region: Nudix_Hydrolase; cl00447
264201002069	nudix motif; other site
264201002070	soluble pyridine nucleotide transhydrogenase; Provisional; Region: PRK05249
264201002071	putative FAD-binding dehydrogenase; Reviewed; Region: PRK12834
264201002072	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
264201002073	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
264201002074	ATP-dependent chaperone ClpB; Region: chaperone_ClpB; TIGR03346
264201002075	Clp amino terminal domain; Region: Clp_N; pfam02861
264201002076	Clp amino terminal domain; Region: Clp_N; pfam02861
264201002077	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201002078	Walker A motif; other site
264201002079	ATP binding site [chemical binding]; other site
264201002080	Walker B motif; other site
264201002081	arginine finger; other site
264201002082	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201002083	Walker A motif; other site
264201002084	ATP binding site [chemical binding]; other site
264201002085	Walker B motif; other site
264201002086	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431
264201002087	A Receptor for Ubiquitination Targets; Region: FBOX; smart00256
264201002088	Pentapeptide repeats containing protein [Function unknown]; Region: COG1357
264201002089	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
264201002090	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
264201002091	WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl02567
264201002092	F-box-like; Region: F-box-like; cl02535
264201002093	Pentapeptide repeats (9 copies); Region: Pentapeptide_4; pfam13599
264201002094	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
264201002095	A Receptor for Ubiquitination Targets; Region: FBOX; smart00256
264201002096	Pentapeptide repeats containing protein [Function unknown]; Region: COG1357
264201002097	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
264201002098	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cl17189
264201002099	Walker A motif; other site
264201002100	ATP binding site [chemical binding]; other site
264201002101	Walker B motif; other site
264201002102	Pentapeptide repeats (9 copies); Region: Pentapeptide_4; pfam13599
264201002103	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
264201002104	WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl02567
264201002105	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201002106	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
264201002107	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
264201002108	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
264201002109	RHS repeat-associated core domain; Region: Rhs_assc_core; TIGR03696
264201002110	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Region: PLN02925
264201002111	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated; Region: PRK00694
264201002112	Cobalamin adenosyltransferase; Region: Cob_adeno_trans; pfam01923
264201002113	Transglutaminase-like superfamily; Region: Transglut_core2; pfam13369
264201002114	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201002115	binding surface
264201002116	TPR motif; other site
264201002117	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201002118	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002119	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002120	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002121	4-alpha-glucanotransferase; Provisional; Region: PRK14508
264201002122	Tir chaperone protein (CesT) family; Region: CesT; pfam05932
264201002123	Type III secretory pathway, component EscV [Intracellular trafficking and secretion]; Region: EscV; COG4789
264201002124	FHIPEP family; Region: FHIPEP; pfam00771
264201002125	type III secretion system protein; Validated; Region: PRK06298
264201002126	Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]; Region: COG2257; cl15822
264201002127	GTP-binding protein YchF; Reviewed; Region: PRK09601
264201002128	YchF GTPase; Region: YchF; cd01900
264201002129	G1 box; other site
264201002130	GTP/Mg2+ binding site [chemical binding]; other site
264201002131	Switch I region; other site
264201002132	G2 box; other site
264201002133	Switch II region; other site
264201002134	G3 box; other site
264201002135	G4 box; other site
264201002136	G5 box; other site
264201002137	The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information...; Region: TGS; cl15768
264201002138	THUMP domain associated with S-adenosylmethionine-dependent methyltransferases; Region: THUMP_AdoMetMT; cd11715
264201002139	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
264201002140	S-adenosylmethionine binding site [chemical binding]; other site
264201002141	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002142	FAD synthetase, N-terminal domain of the bifunctional enzyme; Region: FAD_synthetase_N; cd02064
264201002143	bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed; Region: PRK05627
264201002144	active site
264201002145	Riboflavin kinase; Region: Flavokinase; pfam01687
264201002146	tRNA pseudouridine synthase B; Provisional; Region: truB; PRK00989
264201002147	Pseudouridine synthase, Escherichia coli TruB like; Region: PseudoU_synth_EcTruB; cd02573
264201002148	RNA binding site [nucleotide binding]; other site
264201002149	active site
264201002150	ribosome-binding factor A; Validated; Region: rbfA; PRK00521
264201002151	translation initiation factor IF-2; Validated; Region: infB; PRK05306
264201002152	Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760
264201002153	Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887
264201002154	G1 box; other site
264201002155	putative GEF interaction site [polypeptide binding]; other site
264201002156	GTP/Mg2+ binding site [chemical binding]; other site
264201002157	Switch I region; other site
264201002158	G2 box; other site
264201002159	G3 box; other site
264201002160	Switch II region; other site
264201002161	G4 box; other site
264201002162	G5 box; other site
264201002163	This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell; Region: IF2_mtIF2_II; cd03702
264201002164	Translation-initiation factor 2; Region: IF-2; pfam11987
264201002165	mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor...; Region: mtIF2_IVc; cd03692
264201002166	transcription termination factor NusA; Region: NusA; TIGR01953
264201002167	NusA N-terminal domain; Region: NusA_N; pfam08529
264201002168	S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three...; Region: S1_NusA; cd04455
264201002169	RNA binding site [nucleotide binding]; other site
264201002170	homodimer interface [polypeptide binding]; other site
264201002171	NusA-like KH domain; Region: KH_5; pfam13184
264201002172	NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of...; Region: NusA_KH; cd02134
264201002173	G-X-X-G motif; other site
264201002174	Helix-hairpin-helix motif; Region: HHH; pfam00633
264201002175	30S ribosomal protein S1; Reviewed; Region: rpsA; PRK06299
264201002176	S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec1_hs1; cd05687
264201002177	RNA binding site [nucleotide binding]; other site
264201002178	S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec2_hs2; cd04465
264201002179	RNA binding site [nucleotide binding]; other site
264201002180	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
264201002181	RNA binding site [nucleotide binding]; other site
264201002182	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
264201002183	RNA binding site [nucleotide binding]; other site
264201002184	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
264201002185	RNA binding site [nucleotide binding]; other site
264201002186	S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase  is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA; Region: S1_PNPase; cd04472
264201002187	RNA binding site [nucleotide binding]; other site
264201002188	domain interface; other site
264201002189	AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive...; Region: AAK_AKii-LysC-BS; cd04261
264201002190	putative nucleotide binding site [chemical binding]; other site
264201002191	putative catalytic residues [active]
264201002192	putative Mg ion binding site [ion binding]; other site
264201002193	putative aspartate binding site [chemical binding]; other site
264201002194	Branched-chain amino acid transport protein; Region: Branch_AA_trans; cl00547
264201002195	Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Region: Rpe; COG0036
264201002196	Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose...; Region: RPE; cd00429
264201002197	substrate binding site [chemical binding]; other site
264201002198	hexamer interface [polypeptide binding]; other site
264201002199	metal binding site [ion binding]; metal-binding site
264201002200	elongation factor P; Provisional; Region: PRK12426
264201002201	Elongation factor P (EF-P) KOW-like domain; Region: EFP_N; pfam08207
264201002202	S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_1; cd04470
264201002203	RNA binding site [nucleotide binding]; other site
264201002204	S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_2; cd05794
264201002205	RNA binding site [nucleotide binding]; other site
264201002206	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated; Region: PRK06302
264201002207	The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase; Region: biotinyl_domain; cd06850
264201002208	carboxyltransferase (CT) interaction site; other site
264201002209	biotinylation site [posttranslational modification]; other site
264201002210	acetyl-CoA carboxylase biotin carboxylase subunit; Validated; Region: PRK08591
264201002211	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
264201002212	ATP-grasp domain; Region: ATP-grasp_4; cl17255
264201002213	Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; smart00878
264201002214	Predicted Rossmann fold nucleotide-binding protein [General function prediction only]; Region: COG1611
264201002215	Uncharacterized conserved protein [Function unknown]; Region: COG1284
264201002216	Uncharacterized protein conserved in bacteria (DUF2179); Region: DUF2179; pfam10035
264201002217	Exopolysaccharide synthesis, ExoD; Region: ExoD; pfam06055
264201002218	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
264201002219	methionine aminopeptidase; Provisional; Region: PRK12318
264201002220	SEC-C motif; Region: SEC-C; pfam02810
264201002221	Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086
264201002222	active site
264201002223	glucose-6-phosphate isomerase; Provisional; Region: pgi; PRK14095
264201002224	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_1; cd05015
264201002225	active site
264201002226	dimer interface [polypeptide binding]; other site
264201002227	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_2; cd05016
264201002228	dimer interface [polypeptide binding]; other site
264201002229	active site
264201002230	XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains. XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination...; Region: INT_XerDC; cd00798
264201002231	tyrosine recombinase XerD; Region: recomb_XerD; TIGR02225
264201002232	active site
264201002233	Int/Topo IB signature motif; other site
264201002234	type III secretion low calcium response chaperone LcrH/SycD; Region: LcrH_SycD; TIGR02552
264201002235	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201002236	binding surface
264201002237	TPR motif; other site
264201002238	Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064
264201002239	Cinnamyl alcohol dehydrogenases (CAD); Region: CAD1; cd05283
264201002240	putative NAD(P) binding site [chemical binding]; other site
264201002241	putative substrate binding site [chemical binding]; other site
264201002242	catalytic Zn binding site [ion binding]; other site
264201002243	structural Zn binding site [ion binding]; other site
264201002244	dimer interface [polypeptide binding]; other site
264201002245	Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]; Region: BetA; COG2303
264201002246	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
264201002247	DegT/DnrJ/EryC1/StrS aminotransferase family; Region: DegT_DnrJ_EryC1; pfam01041
264201002248	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
264201002249	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
264201002250	catalytic residue [active]
264201002251	Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscL; COG1970
264201002252	large-conductance mechanosensitive channel; Reviewed; Region: mscL; PRK00567
264201002253	queuine tRNA-ribosyltransferase; Provisional; Region: PRK01008
264201002254	Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]; Region: Tgt; COG0343
264201002255	Uncharacterized ACR, YhhQ family COG1738; Region: DUF165; cl00756
264201002256	Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal...; Region: MIP; cd00333
264201002257	amphipathic channel; other site
264201002258	Asn-Pro-Ala signature motifs; other site
264201002259	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
264201002260	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
264201002261	F-box-like; Region: F-box-like; pfam12937
264201002262	Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic); Region: Peptidase_C39_like; cl00296
264201002263	putative active site [active]
264201002264	Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually...; Region: TIM; cd00311
264201002265	triosephosphate isomerase; Provisional; Region: PRK14567
264201002266	substrate binding site [chemical binding]; other site
264201002267	dimer interface [polypeptide binding]; other site
264201002268	catalytic triad [active]
264201002269	Preprotein translocase SecG subunit; Region: SecG; pfam03840
264201002270	Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II)...; Region: Pep_deformylase; cd00487
264201002271	active site
264201002272	catalytic residues [active]
264201002273	metal binding site [ion binding]; metal-binding site
264201002274	conserved hypothetical protein; Region: TIGR03843
264201002275	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
264201002276	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
264201002277	Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217
264201002278	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
264201002279	metal-binding site [ion binding]
264201002280	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
264201002281	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
264201002282	motif II; other site
264201002283	L-threonine 3-dehydrogenase; Validated; Region: tdh; PRK05396
264201002284	Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR; cl16912
264201002285	NAD(P) binding site [chemical binding]; other site
264201002286	pyridoxal phosphate-dependent acyltransferase, putative; Region: gly_Cac_T_rel; TIGR01825
264201002287	KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS); Region: KBL_like; cd06454
264201002288	substrate-cofactor binding pocket; other site
264201002289	pyridoxal 5'-phosphate binding site [chemical binding]; other site
264201002290	catalytic residue [active]
264201002291	Vitamin K epoxide reductase (VKOR) family in bacteria; Region: VKOR_4; cd12921
264201002292	putative active site [active]
264201002293	redox center [active]
264201002294	Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]; Region: DsbG; COG1651
264201002295	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
264201002296	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
264201002297	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
264201002298	Walker A/P-loop; other site
264201002299	ATP binding site [chemical binding]; other site
264201002300	Q-loop/lid; other site
264201002301	ABC transporter signature motif; other site
264201002302	Walker B; other site
264201002303	D-loop; other site
264201002304	H-loop/switch region; other site
264201002305	FtsX-like permease family; Region: FtsX; pfam02687
264201002306	50S ribosomal protein L33; Validated; Region: rpmG; PRK00595
264201002307	tRNA threonylcarbamoyl adenosine modification protein YgjD; Region: T6A_YgjD; TIGR03723
264201002308	tRNA threonylcarbamoyl adenosine modification protein YeaZ; Region: T6A_YeaZ; TIGR03725
264201002309	6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]; Region: NagB; COG0363
264201002310	6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard...; Region: 6PGL; cd01400
264201002311	putative active site [active]
264201002312	Glucose-6-phosphate dehydrogenase subunit; Region: OpcA_G6PD_assem; pfam10128
264201002313	glucose-6-phosphate 1-dehydrogenase; Validated; Region: PRK05722
264201002314	Glucose-6-phosphate dehydrogenase, NAD binding domain; Region: G6PD_N; pfam00479
264201002315	Glucose-6-phosphate dehydrogenase, C-terminal domain; Region: G6PD_C; pfam02781
264201002316	K-Cl cotransporter; Region: 2a30; TIGR00930
264201002317	Uncharacterized protein family (UPF0081); Region: UPF0081; pfam03652
264201002318	CTP synthetase; Validated; Region: pyrG; PRK05380
264201002319	CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent...; Region: CTGs; cd03113
264201002320	Catalytic site [active]
264201002321	active site
264201002322	UTP binding site [chemical binding]; other site
264201002323	Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Region: GATase1_CTP_Synthase; cd01746
264201002324	active site
264201002325	putative oxyanion hole; other site
264201002326	catalytic triad [active]
264201002327	3-deoxy-manno-octulosonate cytidylyltransferase; Provisional; Region: PRK05450
264201002328	CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide; Region: CMP-KDO-Synthetase; cd02517
264201002329	Ligand binding site; other site
264201002330	oligomer interface; other site
264201002331	Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]; Region: COG2220
264201002332	Beta-lactamase superfamily domain; Region: Lactamase_B_2; pfam12706
264201002333	3-deoxy-D-manno-octulosonic-acid transferase; Reviewed; Region: PRK05749
264201002334	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); Region: Glycos_transf_N; pfam04413
264201002335	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
264201002336	Family of unknown function (DUF648); Region: DUF648; pfam04890
264201002337	Kynurenine formamidase [Amino acid transport and metabolism]; Region: COG1878
264201002338	non-haem dioxygenase in morphine synthesis N-terminal; Region: DIOX_N; pfam14226
264201002339	2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy; pfam03171
264201002340	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696
264201002341	active site
264201002342	metal binding site [ion binding]; metal-binding site
264201002343	Transcriptional regulator [Transcription]; Region: LysR; COG0583
264201002344	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
264201002345	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
264201002346	Lipase.  Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of...; Region: Lipase; cl14883
264201002347	nucleophilic elbow; other site
264201002348	catalytic triad; other site
264201002349	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
264201002350	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
264201002351	Erythromycin esterase; Region: Erythro_esteras; pfam05139
264201002352	Erythromycin esterase; Region: Erythro_esteras; pfam05139
264201002353	Erythromycin esterase; Region: Erythro_esteras; cl17110
264201002354	Uncharacterized conserved protein (DUF2267); Region: DUF2267; pfam10025
264201002355	Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]; Region: Pcm; COG2518
264201002356	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201002357	S-adenosylmethionine binding site [chemical binding]; other site
264201002358	Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases; Region: Endonuclease_V; cl00653
264201002359	SEC-C motif; Region: SEC-C; pfam02810
264201002360	This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily; Region: Alpha_ANH_like_II; cd01993
264201002361	Ligand Binding Site [chemical binding]; other site
264201002362	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201002363	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
264201002364	Walker A motif; other site
264201002365	ATP binding site [chemical binding]; other site
264201002366	Walker B motif; other site
264201002367	arginine finger; other site
264201002368	5'(3')-nucleotidase/polyphosphatase; Provisional; Region: surE; PRK00346
264201002369	aconitate hydratase-like protein; Provisional; Region: PTZ00092
264201002370	Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle; Region: Aconitase; cl00285
264201002371	substrate binding site [chemical binding]; other site
264201002372	Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle; Region: Aconitase; cl00285
264201002373	ligand binding site [chemical binding]; other site
264201002374	Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group...; Region: AcnA_IRP_Swivel; cd01580
264201002375	substrate binding site [chemical binding]; other site
264201002376	Uncharacterized ACR, YhhQ family COG1738; Region: DUF165; pfam02592
264201002377	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
264201002378	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201002379	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
264201002380	ATP-binding cassette domain of the polyamine transporter; Region: ABC_PotA_N; cd03300
264201002381	Walker A/P-loop; other site
264201002382	ATP binding site [chemical binding]; other site
264201002383	Q-loop/lid; other site
264201002384	ABC transporter signature motif; other site
264201002385	Walker B; other site
264201002386	D-loop; other site
264201002387	H-loop/switch region; other site
264201002388	TOBE domain; Region: TOBE_2; pfam08402
264201002389	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
264201002390	dimer interface [polypeptide binding]; other site
264201002391	conserved gate region; other site
264201002392	putative PBP binding loops; other site
264201002393	ABC-ATPase subunit interface; other site
264201002394	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
264201002395	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
264201002396	dimer interface [polypeptide binding]; other site
264201002397	conserved gate region; other site
264201002398	putative PBP binding loops; other site
264201002399	ABC-ATPase subunit interface; other site
264201002400	Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]; Region: PotD; COG0687
264201002401	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
264201002402	Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]; Region: MgtE; COG2239
264201002403	MgtE intracellular N domain; Region: MgtE_N; pfam03448
264201002404	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE.  MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other...; Region: CBS_pair_Mg_transporter; cd04606
264201002405	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair; cl15354
264201002406	Divalent cation transporter; Region: MgtE; pfam01769
264201002407	L-serine dehydratase, iron-sulfur-dependent, single chain form; Region: sda_mono; TIGR00720
264201002408	Serine dehydratase beta chain; Region: SDH_beta; pfam03315
264201002409	Serine dehydratase alpha chain; Region: SDH_alpha; pfam03313
264201002410	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
264201002411	Alpha/beta hydrolase family; Region: Abhydrolase_5; pfam12695
264201002412	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
264201002413	diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional; Region: PRK07085
264201002414	pyrophosphate-dependent phosphofructokinase; Region: PLN02251
264201002415	active site
264201002416	ADP/pyrophosphate binding site [chemical binding]; other site
264201002417	dimerization interface [polypeptide binding]; other site
264201002418	allosteric effector site; other site
264201002419	fructose-1,6-bisphosphate binding site; other site
264201002420	Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase); Region: DHQase_I; cd00502
264201002421	active site
264201002422	bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed; Region: aroDE; PRK09310
264201002423	catalytic residue [active]
264201002424	dimer interface [polypeptide binding]; other site
264201002425	Shikimate dehydrogenase substrate binding domain; Region: Shikimate_dh_N; pfam08501
264201002426	NAD(P) binding domain of Shikimate dehydrogenase; Region: NAD_bind_Shikimate_DH; cd01065
264201002427	shikimate binding site; other site
264201002428	NAD(P) binding site [chemical binding]; other site
264201002429	3-phosphoshikimate 1-carboxyvinyltransferase; Provisional; Region: PRK02427
264201002430	EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form...; Region: EPSP_synthase; cd01556
264201002431	hinge; other site
264201002432	active site
264201002433	shikimate kinase; Provisional; Region: PRK13947
264201002434	Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis...; Region: SK; cd00464
264201002435	ADP binding site [chemical binding]; other site
264201002436	magnesium binding site [ion binding]; other site
264201002437	putative shikimate binding site; other site
264201002438	Chorismate synthase [Amino acid transport and metabolism]; Region: AroC; COG0082
264201002439	Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway; Region: Chorismate_synthase; cd07304
264201002440	Tetramer interface [polypeptide binding]; other site
264201002441	active site
264201002442	FMN-binding site [chemical binding]; other site
264201002443	Caspase domain; Region: Peptidase_C14; pfam00656
264201002444	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002445	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002446	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002447	lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2); type-I; Region: Lumazine_synthase-I; cd09209
264201002448	homopentamer interface [polypeptide binding]; other site
264201002449	active site
264201002450	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional; Region: PRK09311
264201002451	3,4-dihydroxy-2-butanone 4-phosphate synthase; Region: DHBP_synthase; pfam00926
264201002452	GTP cyclohydrolase II (RibA).  GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the...; Region: GTP_cyclohydro2; cd00641
264201002453	dimerization interface [polypeptide binding]; other site
264201002454	active site
264201002455	riboflavin synthase subunit alpha; Provisional; Region: PRK09289
264201002456	Lumazine binding domain; Region: Lum_binding; pfam00677
264201002457	Lumazine binding domain; Region: Lum_binding; pfam00677
264201002458	formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated; Region: PRK01103
264201002459	N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases; Region: EcFpg-like_N; cd08966
264201002460	DNA binding site [nucleotide binding]
264201002461	catalytic residue [active]
264201002462	H2TH interface [polypeptide binding]; other site
264201002463	putative catalytic residues [active]
264201002464	turnover-facilitating residue; other site
264201002465	intercalation triad [nucleotide binding]; other site
264201002466	8OG recognition residue [nucleotide binding]; other site
264201002467	putative reading head residues; other site
264201002468	Formamidopyrimidine-DNA glycosylase H2TH domain; Region: H2TH; pfam06831
264201002469	Zinc finger found in FPG and IleRS; Region: zf-FPG_IleRS; pfam06827
264201002470	RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins; Region: RRM_HP0827_like; cd12399
264201002471	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
264201002472	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
264201002473	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
264201002474	Walker A/P-loop; other site
264201002475	ATP binding site [chemical binding]; other site
264201002476	Virulence factor BrkB; Region: Virul_fac_BrkB; pfam03631
264201002477	Uncharacterized conserved protein [Function unknown]; Region: LemA; COG1704
264201002478	Peptidase family M48; Region: Peptidase_M48; cl12018
264201002479	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
264201002480	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
264201002481	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
264201002482	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
264201002483	Subfamily of Glycosyltransferase Family GT2 of unknown function; Region: GT_2_like_d; cd04196
264201002484	Probable Catalytic site; other site
264201002485	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
264201002486	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
264201002487	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
264201002488	active site
264201002489	Predicted glycosyltransferases [General function prediction only]; Region: COG1216
264201002490	Subfamily of Glycosyltransferase Family GT2 of unknown function; Region: GT_2_like_c; cd04186
264201002491	Probable Catalytic site; other site
264201002492	metal-binding site
264201002493	Predicted membrane protein [Function unknown]; Region: COG2259
264201002494	Cytochrome c [Energy production and conversion]; Region: COG3258
264201002495	Cytochrome c; Region: Cytochrom_C; pfam00034
264201002496	Protein of unknown function (DUF2878); Region: DUF2878; pfam11086
264201002497	Protein of unknown function (DUF2937); Region: DUF2937; pfam11157
264201002498	Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]; Region: MMT1; COG0053
264201002499	Cation efflux family; Region: Cation_efflux; pfam01545
264201002500	putative cation:proton antiport protein; Provisional; Region: PRK10669
264201002501	Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; COG0475
264201002502	K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]; Region: TrkA; COG0569
264201002503	TrkA-N domain; Region: TrkA_N; pfam02254
264201002504	TrkA-C domain; Region: TrkA_C; pfam02080
264201002505	C-terminal processing peptidase family S41; Region: Peptidase_S41; cl02526
264201002506	Interphotoreceptor retinoid-binding protein; serine protease family S41; Region: Peptidase_S41_IRBP; cd07563
264201002507	active site triad [active]
264201002508	Fic family protein [Function unknown]; Region: COG3177
264201002509	Fic/DOC family; Region: Fic; pfam02661
264201002510	Escherichia coli YaeB and related proteins; Region: UPF0066; cd09281
264201002511	homodimer interaction site [polypeptide binding]; other site
264201002512	cofactor binding site; other site
264201002513	Homologs of eIF1/SUI1 including Escherichia coli YciH; Region: YciH_like; cd11567
264201002514	putative rRNA binding site [nucleotide binding]; other site
264201002515	Protein required for attachment to host cells; Region: Host_attach; pfam10116
264201002516	Uncharacterized conserved protein (DUF2156); Region: DUF2156; cl12090
264201002517	amino acid transporter; Region: 2A0306; TIGR00909
264201002518	Predicted glutamine amidotransferases [General function prediction only]; Region: COG2071
264201002519	Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; Region: GATase1_2; cd01745
264201002520	catalytic triad [active]
264201002521	Flagellin N-methylase; Region: FliB; pfam03692
264201002522	Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an...; Region: beta_CA_cladeB; cd00884
264201002523	active site clefts [active]
264201002524	zinc binding site [ion binding]; other site
264201002525	dimer interface [polypeptide binding]; other site
264201002526	Uncharacterized conserved protein (DUF2156); Region: DUF2156; cl12090
264201002527	Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GAT_1; cl00020
264201002528	fructose-bisphosphate aldolase; Provisional; Region: PRK09250
264201002529	Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs); Region: DhnA; cd00958
264201002530	putative active site; other site
264201002531	catalytic residue [active]
264201002532	Haloacid dehalogenase-like hydrolase; Region: HAD_2; pfam13419
264201002533	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
264201002534	motif II; other site
264201002535	Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940
264201002536	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
264201002537	nucleotide binding site [chemical binding]; other site
264201002538	PKD domain; Region: PKD; pfam00801
264201002539	Uncharacterized conserved protein [Function unknown]; Region: HdeD; COG3247
264201002540	Zn-dependent hydrolases, including glyoxylases [General function prediction only]; Region: GloB; COG0491
264201002541	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
264201002542	active site residue [active]
264201002543	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
264201002544	active site residue [active]
264201002545	Lipocalin-like domain; Region: Lipocalin_2; pfam08212
264201002546	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
264201002547	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
264201002548	catalytic residues [active]
264201002549	Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain; Region: MPP_PF1019; cd07391
264201002550	putative active site [active]
264201002551	putative metal binding site [ion binding]; other site
264201002552	DEXH box helicase, DNA ligase-associated; Region: DEXH_lig_assoc; TIGR04121
264201002553	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
264201002554	ATP binding site [chemical binding]; other site
264201002555	putative Mg++ binding site [ion binding]; other site
264201002556	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
264201002557	nucleotide binding region [chemical binding]; other site
264201002558	ATP-binding site [chemical binding]; other site
264201002559	DEAD/H associated; Region: DEAD_assoc; pfam08494
264201002560	ATP-dependent DNA ligase; Validated; Region: PRK09247
264201002561	Adenylation domain of putative bacterial ATP-dependent DNA ligases; Region: Adenylation_DNA_ligase_Bac1; cd07897
264201002562	active site
264201002563	DNA binding site [nucleotide binding]
264201002564	The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit; Region: OBF_DNA_ligase_Arch_LigB; cd07972
264201002565	DNA binding site [nucleotide binding]
264201002566	putative exonuclease, DNA ligase-associated; Region: Xnuc_lig_assoc; TIGR04122
264201002567	short chain dehydrogenase; Provisional; Region: PRK06701
264201002568	classical (c) SDR, subgroup 1; Region: SDR_c1; cd05355
264201002569	NAD binding site [chemical binding]; other site
264201002570	metal binding site [ion binding]; metal-binding site
264201002571	active site
264201002572	YciF bacterial stress response protein, ferritin-like iron-binding domain; Region: YciF; cd07909
264201002573	dimerization interface [polypeptide binding]; other site
264201002574	metal binding site [ion binding]; metal-binding site
264201002575	nonheme-containing ferritins; Region: Nonheme_Ferritin; cd01055
264201002576	Ferritin-like domain; Region: Ferritin; pfam00210
264201002577	ferroxidase diiron center [ion binding]; other site
264201002578	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
264201002579	SNARE associated Golgi protein; Region: SNARE_assoc; cl00429
264201002580	Methyltransferase domain; Region: Methyltransf_26; pfam13659
264201002581	Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557
264201002582	trimer interface [polypeptide binding]; other site
264201002583	active site
264201002584	The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1; Region: GIY-YIG_UPF0213; cd10456
264201002585	GIY-YIG motif/motif A; other site
264201002586	putative active site [active]
264201002587	putative metal binding site [ion binding]; other site
264201002588	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
264201002589	Protein of unknown function (DUF2892); Region: DUF2892; pfam11127
264201002590	bifunctional methionine sulfoxide reductase B/A protein; Provisional; Region: PRK05550
264201002591	Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]; Region: COG0229; cl15841
264201002592	methionine sulfoxide reductase A; Provisional; Region: PRK14054
264201002593	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201002594	RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; Region: Rel-Spo_like; cl11966
264201002595	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cl15309
264201002596	Leucine-rich repeats; other site
264201002597	Substrate binding site [chemical binding]; other site
264201002598	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201002599	Predicted flavoprotein [General function prediction only]; Region: COG0431
264201002600	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
264201002601	Transcriptional accessory protein [Transcription]; Region: Tex; COG2183
264201002602	Tex-like protein N-terminal domain; Region: Tex_N; pfam09371
264201002603	Likely ribonuclease with RNase H fold; Region: YqgFc; smart00732
264201002604	S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression; Region: S1_Tex; cd05685
264201002605	RNA binding site [nucleotide binding]; other site
264201002606	DNA polymerase V subunit UmuC; Reviewed; Region: umuC; PRK03609
264201002607	umuC subunit of DNA Polymerase V; Region: PolY_Pol_V_umuC; cd01700
264201002608	active site
264201002609	DNA binding site [nucleotide binding]
264201002610	Domain of unknown function (DUF4113); Region: DUF4113; pfam13438
264201002611	SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]; Region: LexA; COG1974
264201002612	Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC...; Region: S24_LexA-like; cd06529
264201002613	Catalytic site [active]
264201002614	Protein of unknown function (DUF4019); Region: DUF4019; pfam13211
264201002615	superfamily containing globins and truncated hemoglobins; Region: globin_like; cl00280
264201002616	heme-binding site [chemical binding]; other site
264201002617	Transmembrane proteins 14C; Region: Tmemb_14; pfam03647
264201002618	Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; Region: MATE_like_7; cd13133
264201002619	Na+-driven multidrug efflux pump [Defense mechanisms]; Region: NorM; COG0534
264201002620	TraE protein; Region: TraE; cl05060
264201002621	Type IV conjugative transfer system lipoprotein (TraV); Region: TraV; pfam09676
264201002622	Transposase; Region: HTH_Tnp_1; pfam01527
264201002623	Integrase core domain; Region: rve; pfam00665
264201002624	ParG; Region: ParG; pfam09274
264201002625	Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]; Region: RelE; COG2026
264201002626	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002627	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002628	BTB/POZ domain; Region: BTB; cl02518
264201002629	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002630	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
264201002631	DNA binding site [nucleotide binding]
264201002632	active site
264201002633	Int/Topo IB signature motif; other site
264201002634	catalytic residues [active]
264201002635	Predicted transcriptional regulator [Transcription]; Region: COG3636; cl17681
264201002636	putative addiction module killer protein; Region: upstrm_HI1419; TIGR02683
264201002637	Antitoxin Phd_YefM, type II toxin-antitoxin system; Region: PhdYeFM_antitox; pfam02604
264201002638	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002639	HTH-like domain; Region: HTH_21; pfam13276
264201002640	insertion element IS2 transposase InsD; Provisional; Region: PRK14702
264201002641	Integrase core domain; Region: rve; pfam00665
264201002642	Integrase core domain; Region: rve_3; pfam13683
264201002643	Transposase; Region: HTH_Tnp_1; cl17663
264201002644	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
264201002645	SAM (Sterile alpha motif ); Region: SAM_superfamily; cl15755
264201002646	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
264201002647	Transposase; Region: HTH_Tnp_1; pfam01527
264201002648	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: Tra5; COG2801
264201002649	HTH-like domain; Region: HTH_21; pfam13276
264201002650	Integrase core domain; Region: rve; pfam00665
264201002651	Integrase core domain; Region: rve_3; pfam13683
264201002652	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
264201002653	HI0933-like protein; Region: HI0933_like; pfam03486
264201002654	RNA polymerase Rpb1, domain 1; Region: RNA_pol_Rpb1_1; pfam04997
264201002655	HI0933-like protein; Region: HI0933_like; pfam03486
264201002656	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
264201002657	ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488
264201002658	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
264201002659	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
264201002660	ABC transporter; Region: ABC_tran_2; pfam12848
264201002661	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
264201002662	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
264201002663	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
264201002664	non-specific DNA binding site [nucleotide binding]; other site
264201002665	salt bridge; other site
264201002666	sequence-specific DNA binding site [nucleotide binding]; other site
264201002667	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
264201002668	Fic/DOC family; Region: Fic; cl00960
264201002669	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002670	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002671	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002672	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
264201002673	DNA binding site [nucleotide binding]
264201002674	active site
264201002675	Int/Topo IB signature motif; other site
264201002676	Transposase; Region: HTH_Tnp_1; cl17663
264201002677	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
264201002678	HTH-like domain; Region: HTH_21; pfam13276
264201002679	insertion element IS2 transposase InsD; Provisional; Region: PRK14702
264201002680	Integrase core domain; Region: rve; pfam00665
264201002681	Integrase core domain; Region: rve_3; pfam13683
264201002682	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002683	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002684	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002685	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201002686	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002687	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002688	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002689	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cl15309
264201002690	Leucine-rich repeats; other site
264201002691	Substrate binding site [chemical binding]; other site
264201002692	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002693	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002694	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
264201002695	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
264201002696	Magnesium ion binding site [ion binding]; other site
264201002697	ATPase involved in DNA repair [DNA replication, recombination, and repair]; Region: SbcC; COG0419
264201002698	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
264201002699	adenylate kinase; Reviewed; Region: adk; PRK00279
264201002700	Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for...; Region: ADK; cd01428
264201002701	AMP-binding site [chemical binding]; other site
264201002702	ATP-AMP (Ap5A)-binding site [chemical binding]; other site
264201002703	riboflavin biosynthesis protein RibD; Region: eubact_ribD; TIGR00326
264201002704	Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the...; Region: Riboflavin_deaminase-reductase; cd01284
264201002705	catalytic motif [active]
264201002706	Zn binding site [ion binding]; other site
264201002707	RibD C-terminal domain; Region: RibD_C; cl17279
264201002708	Predicted SAM-dependent methyltransferases [General function prediction only]; Region: COG1092
264201002709	Middle domain of the SAM-dependent methyltransferase RlmI and related proteins; Region: RlmI_M_like; cd11572
264201002710	putative RNA binding site [nucleotide binding]; other site
264201002711	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201002712	S-adenosylmethionine binding site [chemical binding]; other site
264201002713	Protein of unknown function (DUF423); Region: DUF423; pfam04241
264201002714	Methyltransferase domain; Region: Methyltransf_31; pfam13847
264201002715	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201002716	S-adenosylmethionine binding site [chemical binding]; other site
264201002717	leucyl-tRNA synthetase; Validated; Region: leuS; PRK00390
264201002718	catalytic core domain of leucyl-tRNA synthetases; Region: LeuRS_core; cd00812
264201002719	HIGH motif; other site
264201002720	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
264201002721	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
264201002722	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
264201002723	active site
264201002724	KMSKS motif; other site
264201002725	Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases; Region: Anticodon_Ia_Leu_BEm; cd07958
264201002726	tRNA binding surface [nucleotide binding]; other site
264201002727	ribonuclease R; Region: RNase_R; TIGR02063
264201002728	Ribonuclease B OB domain; Region: OB_RNB; pfam08206
264201002729	RNB domain; Region: RNB; pfam00773
264201002730	S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase...; Region: S1_RNase_R; cd04471
264201002731	RNA binding site [nucleotide binding]; other site
264201002732	Uncharacterized conserved protein [Function unknown]; Region: COG2928
264201002733	Protein of unknown function (DUF502); Region: DUF502; cl01107
264201002734	DNA polymerase III chi subunit, HolC; Region: DNA_pol3_chi; cl01106
264201002735	Chlam_Verruc_Plancto small basic protein; Region: Chlam_Ver_rRNA; TIGR04137
264201002736	Uncharacterized protein family UPF0054; Region: UPF0054; pfam02130
264201002737	FOG: CBS domain [General function prediction only]; Region: COG0517
264201002738	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
264201002739	Transporter associated domain; Region: CorC_HlyC; smart01091
264201002740	ribonuclease Y; Region: RNase_Y; TIGR03319
264201002741	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
264201002742	Zn2+ binding site [ion binding]; other site
264201002743	Mg2+ binding site [ion binding]; other site
264201002744	Protein of unknown function (DUF3604); Region: DUF3604; pfam12228
264201002745	Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an...; Region: beta_CA_cladeB; cd00884
264201002746	active site clefts [active]
264201002747	zinc binding site [ion binding]; other site
264201002748	dimer interface [polypeptide binding]; other site
264201002749	Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226
264201002750	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201002751	S-adenosylmethionine binding site [chemical binding]; other site
264201002752	4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites; Region: 4HBT; cd00586
264201002753	active site
264201002754	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]; Region: CaiC; COG0318
264201002755	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
264201002756	AMP binding site [chemical binding]; other site
264201002757	active site
264201002758	acyl-activating enzyme (AAE) consensus motif; other site
264201002759	CoA binding site [chemical binding]; other site
264201002760	1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated; Region: PRK06080
264201002761	UbiA prenyltransferase family; Region: UbiA; pfam01040
264201002762	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
264201002763	Enoyl-CoA hydratase/isomerase family; Region: ECH; pfam00378
264201002764	substrate binding site [chemical binding]; other site
264201002765	oxyanion hole (OAH) forming residues; other site
264201002766	trimer interface [polypeptide binding]; other site
264201002767	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cl15309
264201002768	Leucine-rich repeats; other site
264201002769	Substrate binding site [chemical binding]; other site
264201002770	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201002771	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
264201002772	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase; Region: menD; TIGR00173
264201002773	Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1- carboxylate synthase (MenD) and related proteins; Region: TPP_PYR_MenD; cd07037
264201002774	dimer interface [polypeptide binding]; other site
264201002775	tetramer interface [polypeptide binding]; other site
264201002776	PYR/PP interface [polypeptide binding]; other site
264201002777	TPP binding site [chemical binding]; other site
264201002778	Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key...; Region: TPP_SHCHC_synthase; cd02009
264201002779	TPP-binding site; other site
264201002780	chorismate binding enzyme; Region: Chorismate_bind; pfam00425
264201002781	DNA polymerase III, delta' subunit; Region: holB; TIGR00678
264201002782	DNA polymerase III subunit delta'; Validated; Region: PRK08485
264201002783	ATPase involved in DNA replication [DNA replication, recombination, and repair]; Region: HolB; COG0470
264201002784	thymidylate kinase; Validated; Region: tmk; PRK00698
264201002785	Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step...; Region: TMPK; cd01672
264201002786	TMP-binding site; other site
264201002787	ATP-binding site [chemical binding]; other site
264201002788	DNA gyrase subunit A; Validated; Region: PRK05560
264201002789	DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes...; Region: TOP4c; cd00187
264201002790	CAP-like domain; other site
264201002791	active site
264201002792	primary dimer interface [polypeptide binding]; other site
264201002793	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
264201002794	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
264201002795	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
264201002796	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
264201002797	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
264201002798	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
264201002799	DNA gyrase subunit B; Provisional; Region: gyrB; PRK14939
264201002800	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
264201002801	ATP binding site [chemical binding]; other site
264201002802	Mg2+ binding site [ion binding]; other site
264201002803	G-X-G motif; other site
264201002804	TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are; Region: TopoII_Trans_DNA_gyrase; cd00822
264201002805	anchoring element; other site
264201002806	dimer interface [polypeptide binding]; other site
264201002807	ATP binding site [chemical binding]; other site
264201002808	TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the...; Region: TOPRIM_TopoIIA_GyrB; cd03366
264201002809	active site
264201002810	putative metal-binding site [ion binding]; other site
264201002811	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
264201002812	Protein of unknown function (DUF721); Region: DUF721; pfam05258
264201002813	Autotransporter beta-domain; Region: Autotransporter; cl17461
264201002814	4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed; Region: ispH; PRK01045
264201002815	4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]; Region: lytB; COG0761
264201002816	Protein-tyrosine-phosphatase [Signal transduction mechanisms]; Region: Wzb; COG0394
264201002817	Low molecular weight phosphatase family; Region: LMWPc; cd00115
264201002818	active site
264201002819	Serine/Threonine protein kinases, catalytic domain; Region: S_TKc; smart00220
264201002820	Catalytic domain of Protein Kinases; Region: PKc; cd00180
264201002821	active site
264201002822	ATP binding site [chemical binding]; other site
264201002823	substrate binding site [chemical binding]; other site
264201002824	activation loop (A-loop); other site
264201002825	Uncharacterized conserved protein [Function unknown]; Region: COG1262
264201002826	Formylglycine-generating sulfatase enzyme; Region: FGE-sulfatase; pfam03781
264201002827	putative inner membrane protein translocase component YidC; Provisional; Region: PRK01001
264201002828	membrane protein insertase, YidC/Oxa1 family, C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592
264201002829	chromosomal replication initiation protein; Provisional; Region: PRK12422
264201002830	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201002831	Walker A motif; other site
264201002832	ATP binding site [chemical binding]; other site
264201002833	Walker B motif; other site
264201002834	arginine finger; other site
264201002835	C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571
264201002836	DnaA box-binding interface [nucleotide binding]; other site
264201002837	prolipoprotein diacylglyceryl transferase; Reviewed; Region: PRK00052
264201002838	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
264201002839	Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633
264201002840	catalytic loop [active]
264201002841	iron binding site [ion binding]; other site
264201002842	hybrid cluster protein-associated redox disulfide domain; Region: prismane_assoc; TIGR03980
264201002843	Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]; Region: sufA; COG0316
264201002844	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
264201002845	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
264201002846	dihydrolipoamide dehydrogenase; Region: lipoamide_DH; TIGR01350
264201002847	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
264201002848	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
264201002849	dihydrolipoamide succinyltransferase; Validated; Region: PRK05704
264201002850	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
264201002851	E3 interaction surface; other site
264201002852	lipoyl attachment site [posttranslational modification]; other site
264201002853	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
264201002854	2-oxoglutarate dehydrogenase E1 component; Reviewed; Region: sucA; PRK09404
264201002855	Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of...; Region: TPP_E1_OGDC_like; cd02016
264201002856	TPP-binding site [chemical binding]; other site
264201002857	Transketolase, pyrimidine binding domain; Region: Transket_pyr; pfam02779
264201002858	dimer interface [polypeptide binding]; other site
264201002859	PYR/PP interface [polypeptide binding]; other site
264201002860	TPP binding site [chemical binding]; other site
264201002861	Dienelactone hydrolase family; Region: DLH; pfam01738
264201002862	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
264201002863	Cytochrome C assembly protein; Region: Cytochrom_C_asm; cl00504
264201002864	chromosome segregation protein SMC, primarily archaeal type; Region: SMC_prok_A; TIGR02169
264201002865	coproporphyrinogen III oxidase; Provisional; Region: PRK06294
264201002866	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
264201002867	FeS/SAM binding site; other site
264201002868	HemN C-terminal domain; Region: HemN_C; pfam06969
264201002869	Uncharacterized subfamily of the tetrapyrrole methylase family similar to ribosomal RNA small subunit methyltransferase I (RsmI); Region: RsmI_like; cd11649
264201002870	homodimer interface [polypeptide binding]; other site
264201002871	putative SAM binding site [chemical binding]; other site
264201002872	DNA polymerase III, delta subunit; Region: DNA_pol3_delta; pfam06144
264201002873	DNA polymerase III, delta subunit; Region: holA; TIGR01128
264201002874	aspartate-semialdehyde dehydrogenase; Reviewed; Region: PRK08664
264201002875	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; smart00859
264201002876	multifunctional aminopeptidase A; Provisional; Region: PRK00913
264201002877	Cytosol aminopeptidase family, N-terminal and catalytic domains.  Family M17 contains zinc- and manganese-dependent exopeptidases ( EC  3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and...; Region: Peptidase_M17; cd00433
264201002878	interface (dimer of trimers) [polypeptide binding]; other site
264201002879	Substrate-binding/catalytic site; other site
264201002880	Zn-binding sites [ion binding]; other site
264201002881	Single-stranded DNA-binding protein [DNA replication, recombination, and repair]; Region: Ssb; COG0629
264201002882	SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496
264201002883	dimer interface [polypeptide binding]; other site
264201002884	ssDNA binding site [nucleotide binding]; other site
264201002885	tetramer (dimer of dimers) interface [polypeptide binding]; other site
264201002886	Tir chaperone protein (CesT) family; Region: CesT; pfam05932
264201002887	Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]; Region: PulA; COG1523
264201002888	N-terminal Early set domain associated with the catalytic domain of Glycogen debranching enzyme and bacterial isoamylase (also called glycogen 6-glucanohydrolase); Region: E_set_GDE_Isoamylase_N; cd02856
264201002889	Alpha amylase catalytic domain found in glycogen debranching enzymes; Region: AmyAc_Glg_debranch; cd11326
264201002890	active site
264201002891	catalytic site [active]
264201002892	Alpha amylase, C-terminal all-beta domain; Region: Alpha-amylase_C; cl02706
264201002893	Stage II sporulation protein; Region: SpoIID; pfam08486
264201002894	Holliday junction DNA helicase RuvB; Reviewed; Region: ruvB; PRK00080
264201002895	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201002896	Walker A motif; other site
264201002897	ATP binding site [chemical binding]; other site
264201002898	Walker B motif; other site
264201002899	Holliday junction DNA helicase ruvB C-terminus; Region: RuvB_C; pfam05491
264201002900	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201002901	binding surface
264201002902	TPR motif; other site
264201002903	Anaphase-promoting complex, cyclosome, subunit 3; Region: Apc3; pfam12895
264201002904	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201002905	S-adenosylmethionine binding site [chemical binding]; other site
264201002906	Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]; Region: MgtE; COG2239
264201002907	MgtE intracellular N domain; Region: MgtE_N; pfam03448
264201002908	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE.  MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other...; Region: CBS_pair_Mg_transporter; cd04606
264201002909	Divalent cation transporter; Region: MgtE; pfam01769
264201002910	Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]; Region: TypA; COG1217
264201002911	Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases; Region: TypA_BipA; cd01891
264201002912	G1 box; other site
264201002913	putative GEF interaction site [polypeptide binding]; other site
264201002914	GTP/Mg2+ binding site [chemical binding]; other site
264201002915	Switch I region; other site
264201002916	G2 box; other site
264201002917	G3 box; other site
264201002918	Switch II region; other site
264201002919	G4 box; other site
264201002920	G5 box; other site
264201002921	BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu.  BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a...; Region: BipA_TypA_II; cd03691
264201002922	BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants.  BipA is a highly...; Region: BipA_TypA_C; cd03710
264201002923	TPR repeat; Region: TPR_11; pfam13414
264201002924	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201002925	TPR motif; other site
264201002926	binding surface
264201002927	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201002928	TPR motif; other site
264201002929	TPR repeat; Region: TPR_11; pfam13414
264201002930	binding surface
264201002931	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201002932	binding surface
264201002933	TPR repeat; Region: TPR_11; pfam13414
264201002934	TPR motif; other site
264201002935	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201002936	Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]; Region: COG1331
264201002937	TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein; Region: SSP411; cd02955
264201002938	catalytic residues [active]
264201002939	LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain...; Region: LanC_like; cl04955
264201002940	active site
264201002941	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
264201002942	Domain of unknown function DUF21; Region: DUF21; pfam01595
264201002943	Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]; Region: CorB; COG4536
264201002944	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
264201002945	Transporter associated domain; Region: CorC_HlyC; smart01091
264201002946	Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan...; Region: Trp-synth-beta_II; cl00342
264201002947	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
264201002948	catalytic residue [active]
264201002949	SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+; Region: SIR2; cl00195
264201002950	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
264201002951	Protein kinase domain; Region: Pkinase; pfam00069
264201002952	Catalytic domain of Protein Kinases; Region: PKc; cd00180
264201002953	active site
264201002954	ATP binding site [chemical binding]; other site
264201002955	substrate binding site [chemical binding]; other site
264201002956	activation loop (A-loop); other site
264201002957	Haemolysin-III related; Region: HlyIII; cl03831
264201002958	channel protein, hemolysin III family; Region: hlyIII; TIGR01065
264201002959	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
264201002960	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
264201002961	Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]; Region: ProC; COG0345
264201002962	NADP oxidoreductase coenzyme F420-dependent; Region: F420_oxidored; cl17232
264201002963	cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain; Region: cyclophilin_WD40; cd01927
264201002964	active site
264201002965	Thioredoxin; Region: Thioredoxin_4; cl17273
264201002966	Predicted membrane protein [Function unknown]; Region: COG4129
264201002967	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
264201002968	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002969	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201002970	Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre...; Region: INT_Cre; cd00799
264201002971	DNA binding site [nucleotide binding]
264201002972	dimer interface [polypeptide binding]; other site
264201002973	active site
264201002974	Int/Topo IB signature motif; other site
264201002975	Antitoxin Phd_YefM, type II toxin-antitoxin system; Region: PhdYeFM_antitox; pfam02604
264201002976	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cl15309
264201002977	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201002978	YciF bacterial stress response protein, ferritin-like iron-binding domain; Region: YciF; cd07909
264201002979	dimerization interface [polypeptide binding]; other site
264201002980	metal binding site [ion binding]; metal-binding site
264201002981	Uncharacterized conserved protein [Function unknown]; Region: COG2128
264201002982	Carboxymuconolactone decarboxylase family; Region: CMD; pfam02627
264201002983	DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]; Region: Dps; COG0783
264201002984	DPS protein, ferritin-like diiron-binding domain; Region: DPS; cd01043
264201002985	dimerization interface [polypeptide binding]; other site
264201002986	DPS ferroxidase diiron center [ion binding]; other site
264201002987	ion pore; other site
264201002988	enoyl-[acyl-carrier-protein] reductase; Region: PLN02730
264201002989	enoyl-(acyl carrier protein) reductase; Provisional; Region: PRK06300
264201002990	NAD(P) binding site [chemical binding]; other site
264201002991	active site
264201002992	pteridine reductase (PR), classical (c) SDRs; Region: PR_SDR_c; cd05357
264201002993	3-ketoacyl-(acyl-carrier-protein) reductase; Provisional; Region: fabG; PRK12825
264201002994	NADP binding site [chemical binding]; other site
264201002995	substrate binding pocket [chemical binding]; other site
264201002996	active site
264201002997	Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_37; cd04696
264201002998	nudix motif; other site
264201002999	Dihydroneopterin aldolase; Region: FolB; pfam02152
264201003000	active site
264201003001	Predicted hydrolases of the HAD superfamily [General function prediction only]; Region: Cof; COG0561
264201003002	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cl17915
264201003003	active site
264201003004	motif I; other site
264201003005	motif II; other site
264201003006	Flagellar biosynthesis protein, FliO; Region: FliO; cl01247
264201003007	Putative bacterial sensory transduction regulator; Region: YbjN; cl15834
264201003008	DNA polymerase III subunit epsilon; Validated; Region: PRK06309
264201003009	DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127
264201003010	active site
264201003011	substrate binding site [chemical binding]; other site
264201003012	catalytic site [active]
264201003013	Protein of unknown function (DUF3820); Region: DUF3820; cl01411
264201003014	atypical (a) SDRs, subgroup 4; Region: SDR_a4; cd05266
264201003015	putative NAD(P) binding site [chemical binding]; other site
264201003016	NAD dependent epimerase/dehydratase family; Region: Epimerase; pfam01370
264201003017	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
264201003018	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
264201003019	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
264201003020	Walker A/P-loop; other site
264201003021	ATP binding site [chemical binding]; other site
264201003022	Q-loop/lid; other site
264201003023	ABC transporter signature motif; other site
264201003024	Walker B; other site
264201003025	D-loop; other site
264201003026	H-loop/switch region; other site
264201003027	acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated; Region: PRK05724
264201003028	acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional; Region: accA; CHL00198
264201003029	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
264201003030	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
264201003031	IHF dimer interface [polypeptide binding]; other site
264201003032	IHF - DNA interface [nucleotide binding]; other site
264201003033	tyrosyl-tRNA synthetase; Validated; Region: PRK05912
264201003034	catalytic core domain of tyrosinyl-tRNA synthetase; Region: TyrRS_core; cd00805
264201003035	active site
264201003036	HIGH motif; other site
264201003037	dimer interface [polypeptide binding]; other site
264201003038	KMSKS motif; other site
264201003039	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
264201003040	RNA binding surface [nucleotide binding]; other site
264201003041	BON domain; Region: BON; pfam04972
264201003042	Uncharacterized conserved protein [Function unknown]; Region: COG0327
264201003043	NIF3 (NGG1p interacting factor 3); Region: NIF3; cl15371
264201003044	RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the...; Region: RPI_A; cd01398
264201003045	tetramer (dimer of dimers) interface [polypeptide binding]; other site
264201003046	active site
264201003047	dimer interface [polypeptide binding]; other site
264201003048	Bifunctional nuclease; Region: DNase-RNase; pfam02577
264201003049	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
264201003050	dimerization domain swap beta strand [polypeptide binding]; other site
264201003051	regulatory protein interface [polypeptide binding]; other site
264201003052	active site
264201003053	regulatory phosphorylation site [posttranslational modification]; other site
264201003054	oligoendopeptidase F; Region: pepF; TIGR00181
264201003055	Peptidase family M3B Oligopeptidase F (PepF); Region: M3B_PepF_3; cd09608
264201003056	active site
264201003057	Zn binding site [ion binding]; other site
264201003058	Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It...; Region: cpn10; cd00320
264201003059	oligomerisation interface [polypeptide binding]; other site
264201003060	mobile loop; other site
264201003061	roof hairpin; other site
264201003062	chaperonin GroEL; Reviewed; Region: groEL; PRK12849
264201003063	GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344
264201003064	ring oligomerisation interface [polypeptide binding]; other site
264201003065	ATP/Mg binding site [chemical binding]; other site
264201003066	stacking interactions; other site
264201003067	hinge regions; other site
264201003068	putative UV damage endonuclease; Provisional; Region: uvsE; PRK02308
264201003069	Xylose isomerase-like TIM barrel; Region: AP_endonuc_2; pfam01261
264201003070	Topoisomerase IB [DNA replication, recombination, and repair]; Region: COG3569
264201003071	DNA topoisomerase IB, C-terminal catalytic domain. Topoisomerase I promotes the relaxation of both positive and negative DNA superhelical tension by introducing a transient single-stranded break in duplex DNA. This function is vital for the processes of...; Region: Topo_IB_C; cd00659
264201003072	active site
264201003073	DNA binding site [nucleotide binding]
264201003074	Int/Topo IB signature motif; other site
264201003075	catalytic residues [active]
264201003076	This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801
264201003077	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
264201003078	methyltransferase, FkbM family; Region: fkbM_fam; TIGR01444
264201003079	TspO/MBR family; Region: TspO_MBR; pfam03073
264201003080	cytochrome o ubiquinol oxidase subunit II; Region: CyoA; TIGR01433
264201003081	Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; pfam00116
264201003082	COX Aromatic Rich Motif; Region: COX_ARM; pfam06481
264201003083	Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion]; Region: CyoB; COG0843
264201003084	Ubiquinol oxidase subunit I.  Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane.  It catalyzes the reduction of O2 and simultaneously pumps protons...; Region: Ubiquinol_Oxidase_I; cd01662
264201003085	D-pathway; other site
264201003086	Putative ubiquinol binding site [chemical binding]; other site
264201003087	Low-spin heme (heme b) binding site [chemical binding]; other site
264201003088	Putative water exit pathway; other site
264201003089	Binuclear center (heme o3/CuB) [ion binding]; other site
264201003090	K-pathway; other site
264201003091	Putative proton exit pathway; other site
264201003092	Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane.  It catalyzes the reduction of O2 and simultaneously...; Region: Ubiquinol_oxidase_III; cd02863
264201003093	Subunit I/III interface [polypeptide binding]; other site
264201003094	Subunit III/IV interface [polypeptide binding]; other site
264201003095	cytochrome o ubiquinol oxidase subunit IV; Region: CyoD; TIGR02847
264201003096	protoheme IX farnesyltransferase; Provisional; Region: PRK04375
264201003097	UbiA prenyltransferase family; Region: UbiA; pfam01040
264201003098	A Receptor for Ubiquitination Targets; Region: FBOX; smart00256
264201003099	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
264201003100	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
264201003101	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
264201003102	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201003103	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003104	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003105	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003106	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003107	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
264201003108	DNA binding site [nucleotide binding]
264201003109	active site
264201003110	Int/Topo IB signature motif; other site
264201003111	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
264201003112	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
264201003113	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
264201003114	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201003115	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
264201003116	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
264201003117	DNA binding site [nucleotide binding]
264201003118	Int/Topo IB signature motif; other site
264201003119	active site
264201003120	catalytic residues [active]
264201003121	Vps4 C terminal oligomerisation domain; Region: Vps4_C; pfam09336
264201003122	F-box-like; Region: F-box-like; pfam12937
264201003123	DNA/RNA non-specific endonuclease; prokaryotic and eukaryotic double- and single-stranded DNA and RNA endonucleases also present in phosphodiesterases.  They exists as monomers and homodimers; Region: NUC; cl00089
264201003124	DNA/RNA non-specific endonuclease; Region: Endonuclease_NS; smart00892
264201003125	active site
264201003126	Mg2+ binding site [ion binding]; other site
264201003127	Peptidase M4 family includes thermolysin, protealysin, aureolysin and neutral protease; Region: M4_neutral_protease; cd09597
264201003128	active site
264201003129	Zn binding site [ion binding]; other site
264201003130	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201003131	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
264201003132	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
264201003133	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
264201003134	ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]; Region: SalY; COG0577
264201003135	FtsX-like permease family; Region: FtsX; pfam02687
264201003136	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
264201003137	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
264201003138	Walker A/P-loop; other site
264201003139	ATP binding site [chemical binding]; other site
264201003140	Q-loop/lid; other site
264201003141	ABC transporter signature motif; other site
264201003142	Walker B; other site
264201003143	D-loop; other site
264201003144	H-loop/switch region; other site
264201003145	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
264201003146	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845
264201003147	Ergosterol biosynthesis ERG4/ERG24 family; Region: ERG4_ERG24; pfam01222
264201003148	DNA mismatch repair protein MutS; Provisional; Region: PRK05399
264201003149	MutS domain I; Region: MutS_I; pfam01624
264201003150	MutS domain II; Region: MutS_II; pfam05188
264201003151	MutS domain III; Region: MutS_III; pfam05192
264201003152	ATP-binding cassette domain of MutS1 homolog; Region: ABC_MutS1; cd03284
264201003153	Walker A/P-loop; other site
264201003154	ATP binding site [chemical binding]; other site
264201003155	Q-loop/lid; other site
264201003156	ABC transporter signature motif; other site
264201003157	Walker B; other site
264201003158	D-loop; other site
264201003159	H-loop/switch region; other site
264201003160	primosome assembly protein PriA; Validated; Region: PRK05580
264201003161	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
264201003162	ATP binding site [chemical binding]; other site
264201003163	putative Mg++ binding site [ion binding]; other site
264201003164	helicase superfamily c-terminal domain; Region: HELICc; smart00490
264201003165	ATP-binding site [chemical binding]; other site
264201003166	ribosomal protein S12 methylthiotransferase RimO; Region: TIGR01125
264201003167	Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919
264201003168	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
264201003169	FeS/SAM binding site; other site
264201003170	lysyl-tRNA synthetase; Reviewed; Region: lysS; PRK00484
264201003171	LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop; Region: LysRS_N; cd04322
264201003172	dimer interface [polypeptide binding]; other site
264201003173	putative anticodon binding site; other site
264201003174	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
264201003175	motif 1; other site
264201003176	dimer interface [polypeptide binding]; other site
264201003177	active site
264201003178	motif 2; other site
264201003179	motif 3; other site
264201003180	transglutaminase; Provisional; Region: tgl; PRK03187
264201003181	cysteinyl-tRNA synthetase; Validated; Region: cysS; PRK00260
264201003182	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
264201003183	active site
264201003184	HIGH motif; other site
264201003185	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
264201003186	KMSKS motif; other site
264201003187	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
264201003188	tRNA binding surface [nucleotide binding]; other site
264201003189	anticodon binding site; other site
264201003190	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
264201003191	putative acyl-acceptor binding pocket; other site
264201003192	long chain fatty acid--[acyl-carrier-protein] ligase; Validated; Region: PRK06334
264201003193	C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas); Region: AAS_C; cd05909
264201003194	acyl-activating enzyme (AAE) consensus motif; other site
264201003195	putative AMP binding site [chemical binding]; other site
264201003196	Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+...; Region: Nudix_Hydrolase; cl00447
264201003197	nudix motif; other site
264201003198	3-oxoacyl-(acyl carrier protein) synthase II; Reviewed; Region: PRK06333
264201003199	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
264201003200	dimer interface [polypeptide binding]; other site
264201003201	active site
264201003202	Oligomerisation domain; Region: Oligomerisation; pfam02410
264201003203	Glutamine synthetase type III N terminal; Region: GSIII_N; pfam12437
264201003204	Uncharacterized protein related to glutamine synthetase [General function prediction only]; Region: COG3968
264201003205	Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120
264201003206	Phosphoserine phosphatase [Amino acid transport and metabolism]; Region: SerB; COG0560
264201003207	haloacid dehalogenase-like hydrolase; Region: HAD; cl17202
264201003208	tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed; Region: miaA; PRK00091
264201003209	Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates...; Region: NK; cd02019
264201003210	active site
264201003211	Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation; Region: STAS_anti-anti-sigma_factors; cd07043
264201003212	anti sigma factor interaction site; other site
264201003213	regulatory phosphorylation site [posttranslational modification]; other site
264201003214	Excinuclease ATPase subunit [DNA replication, recombination, and repair]; Region: UvrA; COG0178
264201003215	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
264201003216	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
264201003217	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
264201003218	Walker A/P-loop; other site
264201003219	ATP binding site [chemical binding]; other site
264201003220	Q-loop/lid; other site
264201003221	ABC transporter signature motif; other site
264201003222	Walker B; other site
264201003223	D-loop; other site
264201003224	H-loop/switch region; other site
264201003225	POTRA domain, FtsQ-type; Region: POTRA_1; pfam08478
264201003226	UDP-N-acetylmuramate--L-alanine ligase; Provisional; Region: murC; PRK00421
264201003227	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
264201003228	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
264201003229	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
264201003230	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional; Region: murG; PRK00726
264201003231	MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide...; Region: GT1_MurG; cd03785
264201003232	active site
264201003233	homodimer interface [polypeptide binding]; other site
264201003234	cell division protein FtsW; Region: ftsW; TIGR02614
264201003235	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
264201003236	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
264201003237	UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]; Region: MurD; COG0771
264201003238	Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases; Region: FDH_GDH_like; cl17240
264201003239	NAD binding site [chemical binding]; other site
264201003240	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
264201003241	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
264201003242	phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional; Region: mraY; PRK00108
264201003243	Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of...; Region: GT_MraY; cd06852
264201003244	Mg++ binding site [ion binding]; other site
264201003245	putative catalytic motif [active]
264201003246	putative substrate binding site [chemical binding]; other site
264201003247	UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]; Region: MurF; COG0770
264201003248	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
264201003249	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
264201003250	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
264201003251	The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide...; Region: Delta9-FADS-like; cd03505
264201003252	Fatty acid desaturase; Region: FA_desaturase; pfam00487
264201003253	Di-iron ligands [ion binding]; other site
264201003254	inositol phosphate phosphatase SopB; Provisional; Region: PRK15378
264201003255	Predicted methyltransferases [General function prediction only]; Region: COG0313
264201003256	Ribosomal RNA small subunit methyltransferase I, also known as rRNA (cytidine-2'-O-)-methyltransferase RsmI; Region: RsmI; cd11648
264201003257	putative SAM binding site [chemical binding]; other site
264201003258	putative homodimer interface [polypeptide binding]; other site
264201003259	chaperonin GroEL; Reviewed; Region: groEL; PRK12849
264201003260	GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344
264201003261	ring oligomerisation interface [polypeptide binding]; other site
264201003262	ATP/Mg binding site [chemical binding]; other site
264201003263	stacking interactions; other site
264201003264	hinge regions; other site
264201003265	solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain; Region: SLC6sbd_Tyt1-Like; cd10336
264201003266	Na2 binding site [ion binding]; other site
264201003267	putative substrate binding site 1 [chemical binding]; other site
264201003268	Na binding site 1 [ion binding]; other site
264201003269	putative substrate binding site 2 [chemical binding]; other site
264201003270	Flagellin N-methylase; Region: FliB; pfam03692
264201003271	phosphoglucomutase-2-like protein; Provisional; Region: PTZ00150
264201003272	This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and...; Region: PGM2; cd05799
264201003273	active site
264201003274	substrate binding site [chemical binding]; other site
264201003275	metal binding site [ion binding]; metal-binding site
264201003276	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201003277	pseudaminic acid synthase; Region: PseI; TIGR03586
264201003278	NeuB family; Region: NeuB; pfam03102
264201003279	C-terminal SAF domain of sialic acid synthetase; Region: SAF_NeuB_like; cd11615
264201003280	NeuB binding interface [polypeptide binding]; other site
264201003281	putative substrate binding site [chemical binding]; other site
264201003282	helicase 45; Provisional; Region: PTZ00424
264201003283	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
264201003284	ATP binding site [chemical binding]; other site
264201003285	Mg++ binding site [ion binding]; other site
264201003286	motif III; other site
264201003287	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
264201003288	nucleotide binding region [chemical binding]; other site
264201003289	ATP-binding site [chemical binding]; other site
264201003290	Short-chain dehydrogenases of various substrate specificities [General function prediction only]; Region: DltE; COG0300
264201003291	classical (c) SDRs; Region: SDR_c; cd05233
264201003292	NAD(P) binding site [chemical binding]; other site
264201003293	active site
264201003294	Predicted membrane-associated HD superfamily hydrolase [General function prediction only]; Region: COG1480
264201003295	7TM receptor with intracellular HD hydrolase; Region: 7TM-7TMR_HD; pfam07698
264201003296	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
264201003297	Zn2+ binding site [ion binding]; other site
264201003298	Mg2+ binding site [ion binding]; other site
264201003299	PAP2_like_6 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which mainly contains bacterial proteins, lacks functional characterization and may act as a membrane-associated lipid phosphatase; Region: PAP2_like_6; cd03396
264201003300	active site
264201003301	LexA repressor; Validated; Region: PRK00215
264201003302	LexA DNA binding domain; Region: LexA_DNA_bind; pfam01726
264201003303	Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC...; Region: S24_LexA-like; cd06529
264201003304	Catalytic site [active]
264201003305	Phosphatidylserine synthase [Lipid metabolism]; Region: PssA; COG1183
264201003306	CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; pfam01066
264201003307	Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]; Region: COG1026
264201003308	Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675
264201003309	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
264201003310	Peptidase M16C associated; Region: M16C_assoc; pfam08367
264201003311	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
264201003312	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201003313	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003314	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003315	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
264201003316	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
264201003317	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
264201003318	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201003319	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003320	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003321	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
264201003322	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201003323	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201003324	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003325	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003326	DDE superfamily endonuclease; Region: DDE_3; pfam13358
264201003327	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3335
264201003328	Transposase; Region: HTH_Tnp_IS630; pfam01710
264201003329	Helix-turn-helix domain; Region: HTH_28; pfam13518
264201003330	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
264201003331	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201003332	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003333	tRNA (guanine-N(7)-)-methyltransferase; Reviewed; Region: trmB; PRK00121
264201003334	Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]; Region: COG2355
264201003335	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
264201003336	active site
264201003337	hypothetical protein; Provisional; Region: PRK08201
264201003338	Uncharacterized M20 Dipeptidases; Region: M20_dipept_like_3; cd05680
264201003339	metal binding site [ion binding]; metal-binding site
264201003340	putative dimer interface [polypeptide binding]; other site
264201003341	periplasmic serine protease, Do/DeqQ family; Region: degP_htrA_DO; TIGR02037
264201003342	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
264201003343	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
264201003344	protein binding site [polypeptide binding]; other site
264201003345	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
264201003346	protein binding site [polypeptide binding]; other site
264201003347	Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]; Region: RssA; COG1752
264201003348	Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1; Region: Pat_PNPLA6_PNPLA7_NTE1_like; cd07205
264201003349	nucleophile elbow; other site
264201003350	SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F...; Region: S2P-M50_SpoIVFB; cd06161
264201003351	Peptidase family M50; Region: Peptidase_M50; pfam02163
264201003352	active site
264201003353	putative substrate binding region [chemical binding]; other site
264201003354	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cl02429
264201003355	binding surface
264201003356	TPR motif; other site
264201003357	succinyl-CoA synthetase subunit alpha; Validated; Region: PRK05678
264201003358	CoA binding domain; Region: CoA_binding; smart00881
264201003359	CoA-ligase; Region: Ligase_CoA; pfam00549
264201003360	succinyl-CoA synthetase subunit beta; Provisional; Region: sucC; PRK00696
264201003361	ATP-grasp domain; Region: ATP-grasp_2; pfam08442
264201003362	CoA-ligase; Region: Ligase_CoA; pfam00549
264201003363	signal recognition particle-docking protein FtsY; Provisional; Region: PRK10416
264201003364	SRP54-type protein, helical bundle domain; Region: SRP54_N; pfam02881
264201003365	The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115
264201003366	P loop; other site
264201003367	GTP binding site [chemical binding]; other site
264201003368	UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]; Region: GalE; COG1087
264201003369	UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs; Region: UDP_G4E_1_SDR_e; cd05247
264201003370	NAD binding site [chemical binding]; other site
264201003371	homodimer interface [polypeptide binding]; other site
264201003372	active site
264201003373	substrate binding site [chemical binding]; other site
264201003374	Tryptophan/tyrosine permease family; Region: Trp_Tyr_perm; cl17316
264201003375	aromatic amino acid transport protein; Region: araaP; TIGR00837
264201003376	glucosamine--fructose-6-phosphate aminotransferase; Reviewed; Region: PRK00331
264201003377	Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans).  The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In...; Region: GFAT; cd00714
264201003378	glutaminase active site [active]
264201003379	SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008
264201003380	dimer interface [polypeptide binding]; other site
264201003381	active site
264201003382	SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009
264201003383	dimer interface [polypeptide binding]; other site
264201003384	active site
264201003385	phosphoglucosamine mutase; Provisional; Region: glmM; PRK14314
264201003386	GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of...; Region: GlmM; cd05802
264201003387	active site
264201003388	substrate binding site [chemical binding]; other site
264201003389	metal binding site [ion binding]; metal-binding site
264201003390	Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398
264201003391	active site
264201003392	NTP binding site [chemical binding]; other site
264201003393	metal binding triad [ion binding]; metal-binding site
264201003394	Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627
264201003395	Polymerase A arginine-rich C-terminus; Region: PolyA_pol_arg_C; pfam12626
264201003396	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
264201003397	Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187
264201003398	Putative Catalytic site; other site
264201003399	DXD motif; other site
264201003400	Lipid A Biosynthesis N-terminal domain; Region: LAB_N; cl01627
264201003401	Lipid A Biosynthesis N-terminal domain; Region: LAB_N; cl01627
264201003402	Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]; Region: LpxB; COG0763
264201003403	ipid-A-disaccharide synthase; Provisional; Region: PRK14089
264201003404	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374; Region: LPLAT_DUF374-like; cd07983
264201003405	putative acyl-acceptor binding pocket; other site
264201003406	putative phosphate acyltransferase; Provisional; Region: PRK05331
264201003407	50S ribosomal protein L32; Reviewed; Region: rpmF; PRK12286
264201003408	ribonuclease, Rne/Rng family; Region: RNaseEG; TIGR00757
264201003409	S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453
264201003410	homodimer interface [polypeptide binding]; other site
264201003411	oligonucleotide binding site [chemical binding]; other site
264201003412	Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis; Region: LPLAT; cl17185
264201003413	putative acyl-acceptor binding pocket; other site
264201003414	Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]; Region: Ptr; COG1025
264201003415	Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]; Region: Ptr; COG1025
264201003416	Integral membrane protein TerC family; Region: TerC; cl10468
264201003417	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201003418	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
264201003419	prolyl-tRNA synthetase; Provisional; Region: PRK08661
264201003420	Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ProRS_core_arch_euk; cd00778
264201003421	dimer interface [polypeptide binding]; other site
264201003422	motif 1; other site
264201003423	active site
264201003424	motif 2; other site
264201003425	motif 3; other site
264201003426	HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for...; Region: HGTP_anticodon; cl00266
264201003427	anticodon binding site; other site
264201003428	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]; Region: IlvE; COG0115
264201003429	PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and...; Region: PLPDE_IV; cl00224
264201003430	homodimer interface [polypeptide binding]; other site
264201003431	substrate-cofactor binding pocket; other site
264201003432	Aminotransferase class IV; Region: Aminotran_4; pfam01063
264201003433	pyridoxal 5'-phosphate binding site [chemical binding]; other site
264201003434	catalytic residue [active]
264201003435	Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]; Region: TrpE; COG0147
264201003436	Anthranilate synthase component I, N terminal region; Region: Anth_synt_I_N; pfam04715
264201003437	chorismate binding enzyme; Region: Chorismate_bind; pfam00425
264201003438	hypothetical protein; Validated; Region: PRK00110
264201003439	SprT-like family; Region: SprT-like; pfam10263
264201003440	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
264201003441	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
264201003442	Coenzyme A binding pocket [chemical binding]; other site
264201003443	peptide chain release factor 2; Provisional; Region: PRK05589
264201003444	This domain is found in peptide chain release factors; Region: PCRF; smart00937
264201003445	RF-1 domain; Region: RF-1; pfam00472
264201003446	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
264201003447	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
264201003448	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
264201003449	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
264201003450	Walker A/P-loop; other site
264201003451	ATP binding site [chemical binding]; other site
264201003452	Q-loop/lid; other site
264201003453	ABC transporter signature motif; other site
264201003454	Walker B; other site
264201003455	D-loop; other site
264201003456	H-loop/switch region; other site
264201003457	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
264201003458	Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]; Region: DsbG; COG1651
264201003459	Thioredoxin; Region: Thioredoxin_4; pfam13462
264201003460	Acetyltransferase (GNAT) domain; Region: Acetyltransf_8; pfam13523
264201003461	Siderophore biosynthesis protein domain; Region: AlcB; smart01006
264201003462	Predicted flavoprotein [General function prediction only]; Region: COG0431
264201003463	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
264201003464	Methyladenine glycosylase; Region: Adenine_glyco; pfam03352
264201003465	RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; Region: Rel-Spo_like; cl11966
264201003466	metal binding triad [ion binding]; metal-binding site
264201003467	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cl15309
264201003468	Leucine-rich repeats; other site
264201003469	Substrate binding site [chemical binding]; other site
264201003470	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cd00116
264201003471	Leucine-rich repeats; other site
264201003472	Substrate binding site [chemical binding]; other site
264201003473	Leucine rich repeat; Region: LRR_8; pfam13855
264201003474	TLC ATP/ADP transporter; Region: TLC; pfam03219
264201003475	Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX)...; Region: ArsC_like; cd03036
264201003476	putative ArsC-like catalytic residues; other site
264201003477	putative TRX-like catalytic residues [active]
264201003478	type III secretion low calcium response chaperone LcrH/SycD; Region: LcrH_SycD; TIGR02552
264201003479	Tetratricopeptide repeat; Region: TPR_2; pfam07719
264201003480	VIP2; A family of actin-ADP-ribosylating toxin. A member of the Bacillus-prodiced vegetative insecticidal proteins (VIPs) possesses high specificity against the major insect pest, corn rootworms, and belongs to a classs of binary toxins and regulators of...; Region: VIP2; cl00173
264201003481	active site
264201003482	conformational flexibility of ligand binding pocket; other site
264201003483	ADP-ribosylating toxin turn-turn motif; other site
264201003484	ribonucleoside--diphosphate reductase large subunit; Region: PLN02437
264201003485	ATP cone domain; Region: ATP-cone; pfam03477
264201003486	Class I ribonucleotide reductase; Region: RNR_I; cd01679
264201003487	active site
264201003488	dimer interface [polypeptide binding]; other site
264201003489	catalytic residues [active]
264201003490	effector binding site; other site
264201003491	R2 peptide binding site; other site
264201003492	Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; Region: RNRR2; cd01049
264201003493	dimer interface [polypeptide binding]; other site
264201003494	putative radical transfer pathway; other site
264201003495	diiron center [ion binding]; other site
264201003496	tyrosyl radical; other site
264201003497	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; cl17254
264201003498	F-box-like; Region: F-box-like; pfam12937
264201003499	Protein of unknown function DUF115; Region: MAF_flag10; pfam01973
264201003500	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2849
264201003501	Protein of unknown function DUF115; Region: MAF_flag10; pfam01973
264201003502	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2849
264201003503	Protein of unknown function DUF115; Region: MAF_flag10; pfam01973
264201003504	propionate/acetate kinase; Provisional; Region: PRK12379
264201003505	acetate kinase A/propionate kinase 2; Reviewed; Region: PRK00180
264201003506	RasGEF domain; Region: RasGEF; pfam00617
264201003507	Ras interaction site [polypeptide binding]; other site
264201003508	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
264201003509	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
264201003510	active site
264201003511	phosphorylation site [posttranslational modification]
264201003512	intermolecular recognition site; other site
264201003513	dimerization interface [polypeptide binding]; other site
264201003514	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201003515	Walker A motif; other site
264201003516	ATP binding site [chemical binding]; other site
264201003517	Walker B motif; other site
264201003518	arginine finger; other site
264201003519	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
264201003520	Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852
264201003521	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
264201003522	dimer interface [polypeptide binding]; other site
264201003523	phosphorylation site [posttranslational modification]
264201003524	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
264201003525	ATP binding site [chemical binding]; other site
264201003526	Mg2+ binding site [ion binding]; other site
264201003527	G-X-G motif; other site
264201003528	30S ribosomal protein S4; Validated; Region: rpsD; PRK05327
264201003529	Ribosomal protein S4/S9 N-terminal domain; Region: Ribosomal_S4; pfam00163
264201003530	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
264201003531	RNA binding surface [nucleotide binding]; other site
264201003532	Haemolytic domain; Region: Haemolytic; pfam01809
264201003533	Glycosyltransferase like family 2; Region: Glyco_tranf_2_3; pfam13641
264201003534	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
264201003535	active site
264201003536	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201003537	binding surface
264201003538	TPR motif; other site
264201003539	TPR repeat; Region: TPR_11; pfam13414
264201003540	FOG: LysM repeat [Cell envelope biogenesis, outer membrane]; Region: LytE; COG1388
264201003541	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
264201003542	Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and...; Region: PEPCK_GTP; cd00819
264201003543	active site
264201003544	substrate-binding site [chemical binding]; other site
264201003545	metal-binding site [ion binding]
264201003546	GTP binding site [chemical binding]; other site
264201003547	rod shape-determining protein MreB; Provisional; Region: PRK13927
264201003548	MreB and similar proteins; Region: MreB_like; cd10225
264201003549	nucleotide binding site [chemical binding]; other site
264201003550	Mg binding site [ion binding]; other site
264201003551	putative protofilament interaction site [polypeptide binding]; other site
264201003552	RodZ interaction site [polypeptide binding]; other site
264201003553	Bacterial SNF2 helicase associated; Region: SNF2_assoc; pfam08455
264201003554	SNF2 family N-terminal domain; Region: SNF2_N; pfam00176
264201003555	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
264201003556	ATP binding site [chemical binding]; other site
264201003557	putative Mg++ binding site [ion binding]; other site
264201003558	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
264201003559	nucleotide binding region [chemical binding]; other site
264201003560	ATP-binding site [chemical binding]; other site
264201003561	trigger factor; Region: tig; TIGR00115
264201003562	Bacterial trigger factor protein (TF) C-terminus; Region: Trigger_C; pfam05698
264201003563	Clp protease; Region: CLP_protease; pfam00574
264201003564	Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017
264201003565	oligomer interface [polypeptide binding]; other site
264201003566	active site residues [active]
264201003567	ATP-dependent protease ATP-binding subunit ClpX; Provisional; Region: clpX; PRK05342
264201003568	ClpX C4-type zinc finger; Region: zf-C4_ClpX; smart00994
264201003569	Magnesium chelatase, subunit ChlI; Region: Mg_chelatase; pfam01078
264201003570	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201003571	Walker A motif; other site
264201003572	ATP binding site [chemical binding]; other site
264201003573	Walker B motif; other site
264201003574	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
264201003575	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
264201003576	Coenzyme A binding pocket [chemical binding]; other site
264201003577	hybrid sensory histidine kinase TorS; Provisional; Region: PRK11466
264201003578	type III secretion low calcium response chaperone LcrH/SycD; Region: LcrH_SycD; TIGR02552
264201003579	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201003580	binding surface
264201003581	TPR motif; other site
264201003582	Secretion system effector C (SseC) like family; Region: SseC; pfam04888
264201003583	TRADD, N-terminal domain; Region: TRADD_N; pfam09034
264201003584	type III secretion low calcium response chaperone LcrH/SycD; Region: LcrH_SycD; TIGR02552
264201003585	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cl02429
264201003586	binding surface
264201003587	TPR motif; other site
264201003588	Tir chaperone protein (CesT) family; Region: CesT; cl08444
264201003589	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
264201003590	phosphopeptide binding site; other site
264201003591	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
264201003592	type III secretion apparatus protein, YscD/HrpQ family; Region: type_III_yscD; TIGR02500
264201003593	phosphopeptide binding site; other site
264201003594	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
264201003595	active site
264201003596	type III secretion system ATPase; Provisional; Region: PRK06315
264201003597	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
264201003598	Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they...; Region: ATPase_flagellum-secretory_path_III; cd01136
264201003599	Walker A motif/ATP binding site; other site
264201003600	Walker B motif; other site
264201003601	phosphodiesterase; Provisional; Region: PRK12704
264201003602	type III secretion system apparatus protein YscQ/HrcQ; Region: SpaO_YscQ; TIGR02551
264201003603	Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FliN; COG1886
264201003604	Serine/Threonine protein kinases, catalytic domain; Region: S_TKc; smart00220
264201003605	Catalytic domain of Protein Kinases; Region: PKc; cd00180
264201003606	active site
264201003607	ATP binding site [chemical binding]; other site
264201003608	substrate binding site [chemical binding]; other site
264201003609	activation loop (A-loop); other site
264201003610	Stage II sporulation protein E (SpoIIE); Region: SpoIIE; pfam07228
264201003611	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
264201003612	Helix-turn-helix domain; Region: HTH_17; pfam12728
264201003613	Predicted nuclease of restriction endonuclease-like fold [General    function prediction only]; Region: COG4804
264201003614	Protein of unknown function (DUF1016); Region: DUF1016; pfam06250
264201003615	Predicted nuclease of restriction endonuclease-like fold [General    function prediction only]; Region: COG4804
264201003616	Helix-turn-helix domain; Region: HTH_17; pfam12728
264201003617	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cl02529
264201003618	Ankyrin repeats (many copies); Region: Ank_4; pfam13637
264201003619	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
264201003620	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201003621	TraL protein; Region: TraL; cl06278
264201003622	type IV conjugative transfer system protein TraE; Region: TraE_TIGR; TIGR02761
264201003623	TraK protein; Region: TraK; pfam06586
264201003624	conjugal transfer protein TraK; Provisional; Region: PRK13736; cl05878
264201003625	Bacterial conjugation TrbI-like protein; Region: TrbI; pfam03743
264201003626	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
264201003627	F pilus assembly Type-IV secretion system for plasmid transfer; Region: TraC_F_IV; pfam11130
264201003628	type-IV secretion system protein TraC; Region: TraC-F-type; TIGR02746
264201003629	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
264201003630	Walker A motif; other site
264201003631	ATP binding site [chemical binding]; other site
264201003632	Walker B motif; other site
264201003633	conjugative transfer signal peptidase TraF; Region: TraF_Ti; TIGR02771
264201003634	conjugal transfer pilin processing protease TraF; Provisional; Region: PRK13838
264201003635	type-F conjugative transfer system protein TraW; Region: TraW; TIGR02743
264201003636	type-F conjugative transfer system pilin assembly protein TrbC; Region: TrbC_Ftype; TIGR02742
264201003637	TraU protein; Region: TraU; pfam06834
264201003638	conjugal transfer mating pair stabilization protein TraN; Reviewed; Region: PRK12355
264201003639	type-F conjugative transfer system pilin assembly protein TraF; Region: TraF; TIGR02739
264201003640	F plasmid transfer operon protein; Region: TraF; pfam13728
264201003641	Conjugative relaxosome accessory transposon protein; Region: TraH; pfam06122
264201003642	TraG-like protein, N-terminal region; Region: TraG_N; pfam07916
264201003643	type IV conjugative transfer system coupling protein TraD; Region: TraD_Ftype; TIGR02759
264201003644	Bacterial conjugation protein TrwB,  ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component...; Region: TrwB; cd01127
264201003645	multimer interface [polypeptide binding]; other site
264201003646	Walker A motif; other site
264201003647	ATP binding site [chemical binding]; other site
264201003648	Walker B motif; other site
264201003649	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
264201003650	non-specific DNA binding site [nucleotide binding]; other site
264201003651	salt bridge; other site
264201003652	sequence-specific DNA binding site [nucleotide binding]; other site
264201003653	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
264201003654	non-specific DNA binding site [nucleotide binding]; other site
264201003655	salt bridge; other site
264201003656	sequence-specific DNA binding site [nucleotide binding]; other site
264201003657	Protein of unknown function (DUF1016); Region: DUF1016; pfam06250
264201003658	Predicted nuclease of restriction endonuclease-like fold [General    function prediction only]; Region: COG4804
264201003659	A Receptor for Ubiquitination Targets; Region: FBOX; smart00256
264201003660	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
264201003661	Ankyrin repeats (many copies); Region: Ank_4; pfam13637
264201003662	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
264201003663	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
264201003664	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
264201003665	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
264201003666	RmuC family; Region: RmuC; pfam02646
264201003667	zinc-ribbon domain; Region: zinc_ribbon_2; pfam13240
264201003668	Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]; Region: HicB; COG4226
264201003669	HicB family; Region: HicB; pfam05534
264201003670	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cl15309
264201003671	Leucine-rich repeats; other site
264201003672	Substrate binding site [chemical binding]; other site
264201003673	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cd00116
264201003674	Leucine-rich repeats; other site
264201003675	Substrate binding site [chemical binding]; other site
264201003676	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003677	Leucine rich repeat; Region: LRR_8; pfam13855
264201003678	Fic/DOC family; Region: Fic; cl00960
264201003679	Methyltransferase domain; Region: Methyltransf_32; pfam13679
264201003680	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
264201003681	non-specific DNA binding site [nucleotide binding]; other site
264201003682	salt bridge; other site
264201003683	sequence-specific DNA binding site [nucleotide binding]; other site
264201003684	BTB/POZ domain; Region: BTB; cl02518
264201003685	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003686	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003687	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201003688	Protein of unknown function (DUF342); Region: DUF342; pfam03961
264201003689	Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768
264201003690	multiple promoter invertase; Provisional; Region: mpi; PRK13413
264201003691	catalytic residues [active]
264201003692	catalytic nucleophile [active]
264201003693	Presynaptic Site I dimer interface [polypeptide binding]; other site
264201003694	Synaptic Antiparallel dimer interface [polypeptide binding]; other site
264201003695	Synaptic Flat tetramer interface [polypeptide binding]; other site
264201003696	Synaptic Site I dimer interface [polypeptide binding]; other site
264201003697	DNA binding site [nucleotide binding]
264201003698	Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed...; Region: HTH_Hin_like; cd00569
264201003699	DNA-binding interface [nucleotide binding]; DNA binding site
264201003700	Tn3 transposase DDE domain; Region: DDE_Tnp_Tn3; cl14901
264201003701	Tn3 transposase DDE domain; Region: DDE_Tnp_Tn3; cl14901
264201003702	Fic/DOC family; Region: Fic; cl00960
264201003703	Phage derived protein Gp49-like (DUF891); Region: Gp49; cl01470
264201003704	type II secretion system protein D; Region: type_II_gspD; TIGR02517
264201003705	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
264201003706	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
264201003707	pilus (MSHA type) biogenesis protein MshL; Region: pilus_MshL; TIGR02519
264201003708	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
264201003709	Haemolytic domain; Region: Haemolytic; cl00506
264201003710	Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]; Region: SUL1; COG0659
264201003711	Sulfate transporter N-terminal domain with GLY motif; Region: Sulfate_tra_GLY; pfam13792
264201003712	Sulfate transporter family; Region: Sulfate_transp; pfam00916
264201003713	Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; Region: STAS_SulP_like_sulfate_transporter; cd07042
264201003714	ribosome-associated GTPase EngA; Region: GTPase_EngA; TIGR03594
264201003715	EngA1 GTPase contains the first domain of EngA; Region: EngA1; cd01894
264201003716	G1 box; other site
264201003717	GTP/Mg2+ binding site [chemical binding]; other site
264201003718	Switch I region; other site
264201003719	G2 box; other site
264201003720	Switch II region; other site
264201003721	G3 box; other site
264201003722	G4 box; other site
264201003723	G5 box; other site
264201003724	EngA2 GTPase contains the second domain of EngA; Region: EngA2; cd01895
264201003725	G1 box; other site
264201003726	GTP/Mg2+ binding site [chemical binding]; other site
264201003727	Switch I region; other site
264201003728	G2 box; other site
264201003729	G3 box; other site
264201003730	Switch II region; other site
264201003731	G4 box; other site
264201003732	G5 box; other site
264201003733	Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr; Region: PTPc; cl00053
264201003734	active site
264201003735	catalytic residues [active]
264201003736	Domain of unknown function DUF21; Region: DUF21; pfam01595
264201003737	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
264201003738	FOG: CBS domain [General function prediction only]; Region: COG0517
264201003739	Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]; Region: HepA; COG0553
264201003740	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
264201003741	ATP binding site [chemical binding]; other site
264201003742	putative Mg++ binding site [ion binding]; other site
264201003743	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
264201003744	nucleotide binding region [chemical binding]; other site
264201003745	ATP-binding site [chemical binding]; other site
264201003746	Nucleotide-binding domain of the HSP70 family; Region: HSP70_NBD; cd10170
264201003747	nucleotide binding site [chemical binding]; other site
264201003748	putative NEF/HSP70 interaction site [polypeptide binding]; other site
264201003749	SBD interface [polypeptide binding]; other site
264201003750	DNA-K related protein; Region: DUF3731; pfam12531
264201003751	Alanine dehydrogenase [Amino acid transport and metabolism]; Region: Ald; COG0686
264201003752	Alanine dehydrogenase NAD-binding and catalytic domains; Region: L-AlaDH; cd05305
264201003753	hexamer interface [polypeptide binding]; other site
264201003754	ligand binding site [chemical binding]; other site
264201003755	putative active site [active]
264201003756	NAD(P) binding site [chemical binding]; other site
264201003757	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
264201003758	ATP-binding cassette domain of barmotin, a member of the SMC protein family; Region: ABC_SMC_barmotin; cd03278
264201003759	Walker A/P-loop; other site
264201003760	ATP binding site [chemical binding]; other site
264201003761	SMC proteins Flexible Hinge Domain; Region: SMC_hinge; smart00968
264201003762	ATP-binding cassette domain of barmotin, a member of the SMC protein family; Region: ABC_SMC_barmotin; cd03278
264201003763	ABC transporter signature motif; other site
264201003764	Walker B; other site
264201003765	D-loop; other site
264201003766	H-loop/switch region; other site
264201003767	seryl-tRNA synthetase; Provisional; Region: PRK05431
264201003768	Seryl-tRNA synthetase N-terminal domain; Region: Seryl_tRNA_N; pfam02403
264201003769	Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme...; Region: SerRS_core; cd00770
264201003770	dimer interface [polypeptide binding]; other site
264201003771	active site
264201003772	motif 1; other site
264201003773	motif 2; other site
264201003774	motif 3; other site
264201003775	M18 Peptidase Aspartyl aminopeptidase; Region: M18_DAP; cd05658
264201003776	Aminopeptidase I zinc metalloprotease (M18); Region: Peptidase_M18; pfam02127
264201003777	active site
264201003778	metal binding site [ion binding]; metal-binding site
264201003779	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201003780	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
264201003781	BTB/POZ domain; Region: BTB; cl02518
264201003782	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003783	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003784	glutamate dehydrogenase 2; Provisional; Region: PTZ00324
264201003785	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Region: ELFV_dehydrog; smart00839
264201003786	heat-inducible transcription repressor; Provisional; Region: hrcA; PRK00082
264201003787	Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: GrpE; COG0576
264201003788	GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding; Region: GrpE; cd00446
264201003789	dimer interface [polypeptide binding]; other site
264201003790	hsp70 (ATPase domain) interactions [polypeptide binding]; other site
264201003791	molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290
264201003792	Nucleotide-binding domain of human HSPA9 and similar proteins; Region: HSPA9-Ssq1-like_NBD; cd10234
264201003793	nucleotide binding site [chemical binding]; other site
264201003794	NEF interaction site [polypeptide binding]; other site
264201003795	SBD interface [polypeptide binding]; other site
264201003796	ATP synthase B/B' CF(0); Region: ATP-synt_B; cl17192
264201003797	Bacterial SH3 domain; Region: SH3_4; pfam06347
264201003798	Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]; Region: Spr; COG0791
264201003799	NlpC/P60 family; Region: NLPC_P60; pfam00877
264201003800	ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166
264201003801	The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold; Region: PBP2_OppA; cd08504
264201003802	peptide binding site [polypeptide binding]; other site
264201003803	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
264201003804	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
264201003805	dimer interface [polypeptide binding]; other site
264201003806	conserved gate region; other site
264201003807	putative PBP binding loops; other site
264201003808	ABC-ATPase subunit interface; other site
264201003809	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppC; COG1173
264201003810	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
264201003811	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
264201003812	dimer interface [polypeptide binding]; other site
264201003813	conserved gate region; other site
264201003814	putative PBP binding loops; other site
264201003815	ABC-ATPase subunit interface; other site
264201003816	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppD; COG0444
264201003817	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
264201003818	Walker A/P-loop; other site
264201003819	ATP binding site [chemical binding]; other site
264201003820	Q-loop/lid; other site
264201003821	ABC transporter signature motif; other site
264201003822	Walker B; other site
264201003823	D-loop; other site
264201003824	H-loop/switch region; other site
264201003825	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
264201003826	ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; Region: AppF; COG4608
264201003827	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
264201003828	Walker A/P-loop; other site
264201003829	ATP binding site [chemical binding]; other site
264201003830	Q-loop/lid; other site
264201003831	ABC transporter signature motif; other site
264201003832	Walker B; other site
264201003833	D-loop; other site
264201003834	H-loop/switch region; other site
264201003835	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
264201003836	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201003837	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003838	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003839	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003840	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003841	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003842	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201003843	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003844	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003845	ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]; Region: clpA; COG0542
264201003846	Clp amino terminal domain; Region: Clp_N; pfam02861
264201003847	Clp amino terminal domain; Region: Clp_N; pfam02861
264201003848	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201003849	Walker A motif; other site
264201003850	ATP binding site [chemical binding]; other site
264201003851	Walker B motif; other site
264201003852	arginine finger; other site
264201003853	UvrB/uvrC motif; Region: UVR; pfam02151
264201003854	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201003855	Walker A motif; other site
264201003856	ATP binding site [chemical binding]; other site
264201003857	Walker B motif; other site
264201003858	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431
264201003859	Protoporphyrinogen oxidase [Coenzyme metabolism]; Region: HemY; COG1232
264201003860	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
264201003861	Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction...; Region: URO-D; cd00717
264201003862	substrate binding site [chemical binding]; other site
264201003863	active site
264201003864	Transketolase [Carbohydrate transport and metabolism]; Region: TktA; COG0021
264201003865	Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the...; Region: TPP_TK; cd02012
264201003866	TPP-binding site [chemical binding]; other site
264201003867	dimer interface [polypeptide binding]; other site
264201003868	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
264201003869	PYR/PP interface [polypeptide binding]; other site
264201003870	dimer interface [polypeptide binding]; other site
264201003871	TPP binding site [chemical binding]; other site
264201003872	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
264201003873	alanyl-tRNA synthetase; Reviewed; Region: alaS; PRK00252
264201003874	Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: AlaRS_core; cd00673
264201003875	motif 1; other site
264201003876	active site
264201003877	motif 2; other site
264201003878	motif 3; other site
264201003879	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; smart00863
264201003880	Protein of unknown function (DUF541); Region: SIMPL; pfam04402
264201003881	Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]; Region: Mfd; COG1197
264201003882	CarD-like/TRCF domain; Region: CarD_CdnL_TRCF; pfam02559
264201003883	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
264201003884	ATP binding site [chemical binding]; other site
264201003885	putative Mg++ binding site [ion binding]; other site
264201003886	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
264201003887	nucleotide binding region [chemical binding]; other site
264201003888	ATP-binding site [chemical binding]; other site
264201003889	This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli; Region: TRCF; smart00982
264201003890	Predicted permease, member of the PurR regulon [General function prediction only]; Region: yhhT; COG0628
264201003891	Domain of unknown function DUF20; Region: UPF0118; pfam01594
264201003892	type III secretion low calcium response chaperone LcrH/SycD; Region: LcrH_SycD; TIGR02552
264201003893	AMP nucleosidase; Provisional; Region: PRK07115
264201003894	translation elongation factor P; Region: efp; TIGR00038
264201003895	Elongation factor P (EF-P) KOW-like domain; Region: EFP_N; pfam08207
264201003896	S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_1; cd04470
264201003897	RNA binding site [nucleotide binding]; other site
264201003898	S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_2; cd05794
264201003899	RNA binding site [nucleotide binding]; other site
264201003900	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
264201003901	EF-P lysine aminoacylase GenX; Region: genX; TIGR00462
264201003902	motif 1; other site
264201003903	dimer interface [polypeptide binding]; other site
264201003904	active site
264201003905	motif 2; other site
264201003906	motif 3; other site
264201003907	Predicted membrane protein (DUF2231); Region: DUF2231; cl01730
264201003908	Na(+)-translocating NADH-quinone reductase subunit F; Provisional; Region: PRK05464
264201003909	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
264201003910	catalytic loop [active]
264201003911	iron binding site [ion binding]; other site
264201003912	Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase; Region: NADH_quinone_reductase; cd06188
264201003913	FAD binding pocket [chemical binding]; other site
264201003914	FAD binding motif [chemical binding]; other site
264201003915	phosphate binding motif [ion binding]; other site
264201003916	beta-alpha-beta structure motif; other site
264201003917	NAD binding pocket [chemical binding]; other site
264201003918	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
264201003919	homotrimer interaction site [polypeptide binding]; other site
264201003920	putative active site [active]
264201003921	heat shock protein 90; Provisional; Region: PRK05218
264201003922	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
264201003923	ATP binding site [chemical binding]; other site
264201003924	Mg2+ binding site [ion binding]; other site
264201003925	G-X-G motif; other site
264201003926	Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063
264201003927	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
264201003928	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
264201003929	active site
264201003930	metal binding site [ion binding]; metal-binding site
264201003931	Autophagy protein Apg17; Region: APG17; pfam04108
264201003932	Putative bacterial sensory transduction regulator; Region: YbjN; cl15834
264201003933	Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]; Region: COG4809
264201003934	preprotein translocase subunit YajC; Validated; Region: yajC; PRK05585
264201003935	SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]; Region: TrmA; COG2265
264201003936	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201003937	S-adenosylmethionine binding site [chemical binding]; other site
264201003938	Histone H1-like protein Hc1; Region: Hc1; pfam07432
264201003939	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201003940	binding surface
264201003941	TPR motif; other site
264201003942	Biopolymer transport proteins [Intracellular trafficking and secretion]; Region: TolQ; COG0811
264201003943	Biopolymer transport protein ExbD/TolR; Region: ExbD; pfam02472
264201003944	FkbH-like domain; Region: FkbH; TIGR01686
264201003945	Fasciclin domain; Region: Fasciclin; pfam02469
264201003946	maltooligosyl trehalose synthase; Provisional; Region: PRK14511
264201003947	Alpha amylase catalytic domain family; Region: AmyAc_family; cl07893
264201003948	Alpha amylase catalytic domain family; Region: AmyAc_family; cl07893
264201003949	active site
264201003950	catalytic site [active]
264201003951	Alpha amylase catalytic domain found in maltooligosyl trehalose synthase (MTSase); Region: AmyAc_MTSase; cd11336
264201003952	ferrochelatase; Reviewed; Region: hemH; PRK00035
264201003953	Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_N; cd03411
264201003954	C-terminal domain interface [polypeptide binding]; other site
264201003955	active site
264201003956	Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_C; cd00419
264201003957	active site
264201003958	N-terminal domain interface [polypeptide binding]; other site
264201003959	ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]; Region: clpA; COG0542
264201003960	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201003961	Walker A motif; other site
264201003962	ATP binding site [chemical binding]; other site
264201003963	Walker B motif; other site
264201003964	arginine finger; other site
264201003965	Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]; Region: SrmB; COG0513
264201003966	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
264201003967	ATP binding site [chemical binding]; other site
264201003968	Mg++ binding site [ion binding]; other site
264201003969	motif III; other site
264201003970	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
264201003971	nucleotide binding region [chemical binding]; other site
264201003972	ATP-binding site [chemical binding]; other site
264201003973	Transposase; Region: HTH_Tnp_IS630; pfam01710
264201003974	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003975	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201003976	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003977	BTB/POZ domain; Region: BTB; cl02518
264201003978	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003979	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003980	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003981	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201003982	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003983	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201003984	SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat; Region: GT2_SpsF; cd02518
264201003985	ligand binding site; other site
264201003986	HAD superfamily (subfamily IA) hydrolase, TIGR02253; Region: CTE7
264201003987	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
264201003988	motif II; other site
264201003989	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
264201003990	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
264201003991	NAD(P) binding site [chemical binding]; other site
264201003992	active site
264201003993	ATP-grasp domain; Region: ATP-grasp_4; cl17255
264201003994	Acetyltransferase (GNAT) domain; Region: Acetyltransf_4; pfam13420
264201003995	Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; Region: COG1042
264201003996	CoA binding domain; Region: CoA_binding_2; pfam13380
264201003997	Succinyl-CoA ligase like flavodoxin domain; Region: Succ_CoA_lig; pfam13607
264201003998	ATP-grasp domain; Region: ATP-grasp_5; pfam13549
264201003999	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
264201004000	Acetyltransferase (GNAT) domain; Region: Acetyltransf_7; pfam13508
264201004001	RNB domain; Region: RNB; pfam00773
264201004002	This domain is the catalytic domain of ribonuclease II; Region: RNB; smart00955
264201004003	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
264201004004	RNA binding site [nucleotide binding]; other site
264201004005	ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488
264201004006	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
264201004007	ABC transporter; Region: ABC_tran_2; pfam12848
264201004008	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
264201004009	peptide chain release factor 3; Provisional; Region: prfC; PRK00741
264201004010	Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria; Region: RF3; cd04169
264201004011	G1 box; other site
264201004012	putative GEF interaction site [polypeptide binding]; other site
264201004013	GTP/Mg2+ binding site [chemical binding]; other site
264201004014	Switch I region; other site
264201004015	G2 box; other site
264201004016	G3 box; other site
264201004017	Switch II region; other site
264201004018	G4 box; other site
264201004019	G5 box; other site
264201004020	RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the...; Region: RF3_II; cd03689
264201004021	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201004022	S-adenosylmethionine binding site [chemical binding]; other site
264201004023	IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be...; Region: IMPase; cd01639
264201004024	Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]; Region: SuhB; COG0483
264201004025	active site
264201004026	dimerization interface [polypeptide binding]; other site
264201004027	Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]; Region: COG4221
264201004028	classical (c) SDR, subgroup 5; Region: SDR_c5; cd05346
264201004029	putative NAD(P) binding site [chemical binding]; other site
264201004030	homodimer interface [polypeptide binding]; other site
264201004031	homotetramer interface [polypeptide binding]; other site
264201004032	active site
264201004033	putative TIM-barrel protein, nifR3 family; Region: nifR3_yhdG; TIGR00737
264201004034	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
264201004035	FMN binding site [chemical binding]; other site
264201004036	active site
264201004037	catalytic residues [active]
264201004038	substrate binding site [chemical binding]; other site
264201004039	Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+...; Region: Nudix_Hydrolase; cl00447
264201004040	nudix motif; other site
264201004041	Zinc peptidases M18, M20, M28, and M42; Region: Zinc_peptidase_like; cl14876
264201004042	metal binding site [ion binding]; metal-binding site
264201004043	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
264201004044	RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer...; Region: RfaE_like; cd01172
264201004045	putative ribose interaction site [chemical binding]; other site
264201004046	putative ADP binding site [chemical binding]; other site
264201004047	ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs; Region: ADP_GME_SDR_e; cd05248
264201004048	ADP-L-glycero-D-manno-heptose-6-epimerase; Region: heptose_epim; TIGR02197
264201004049	NADP binding site [chemical binding]; other site
264201004050	homopentamer interface [polypeptide binding]; other site
264201004051	substrate binding site [chemical binding]; other site
264201004052	active site
264201004053	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional; Region: PRK14612
264201004054	GHMP kinases N terminal domain; Region: GHMP_kinases_N; pfam00288
264201004055	50S ribosomal protein L9; Reviewed; Region: rplI; PRK00137
264201004056	Ribosomal protein L9, N-terminal domain; Region: Ribosomal_L9_N; pfam01281
264201004057	Ribosomal protein L9, C-terminal domain; Region: Ribosomal_L9_C; pfam03948
264201004058	30S ribosomal protein S18; Reviewed; Region: rpsR; PRK00391
264201004059	30S ribosomal protein S6; Reviewed; Region: rpsF; PRK00453
264201004060	Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through...; Region: PTH; cd00462
264201004061	putative active site [active]
264201004062	Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain; Region: Ribosomal_L25_TL5_CTC; cd00495
264201004063	50S ribosomal protein L25/general stress protein Ctc; Reviewed; Region: PRK05618
264201004064	5S rRNA interface [nucleotide binding]; other site
264201004065	CTC domain interface [polypeptide binding]; other site
264201004066	L16 interface [polypeptide binding]; other site
264201004067	ribose-phosphate pyrophosphokinase; Provisional; Region: PRK01259
264201004068	N-terminal domain of ribose phosphate pyrophosphokinase; Region: Pribosyltran_N; pfam13793
264201004069	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
264201004070	active site
264201004071	glycogen synthase; Provisional; Region: glgA; PRK00654
264201004072	This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family...; Region: GT1_Glycogen_synthase_DULL1_like; cd03791
264201004073	ADP-binding pocket [chemical binding]; other site
264201004074	homodimer interface [polypeptide binding]; other site
264201004075	Phosphatidylglycerophosphate synthase [Lipid metabolism]; Region: PgsA; COG0558
264201004076	Na+/alanine symporter [Amino acid transport and metabolism]; Region: AlsT; COG1115
264201004077	Sodium:alanine symporter family; Region: Na_Ala_symp; cl00548
264201004078	Domain of unknown function (DUF367); Region: DUF367; pfam04034
264201004079	Thioredoxin-like domain; Region: Thioredoxin_2; pfam13098
264201004080	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
264201004081	Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]; Region: UvrD; COG0210
264201004082	Part of AAA domain; Region: AAA_19; pfam13245
264201004083	Family description; Region: UvrD_C_2; pfam13538
264201004084	Ribonuclease P; Region: Ribonuclease_P; pfam00825
264201004085	Ribosomal protein L34; Region: Ribosomal_L34; cl00370
264201004086	50S ribosomal protein L36; Validated; Region: rpmJ; PRK00831
264201004087	30S ribosomal protein S14; Reviewed; Region: rpsN; PRK08881
264201004088	Domain of unknown function (DUF4339); Region: DUF4339; pfam14237
264201004089	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1302
264201004090	RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; Region: Rel-Spo_like; cl11966
264201004091	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cl15309
264201004092	Leucine-rich repeats; other site
264201004093	Substrate binding site [chemical binding]; other site
264201004094	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
264201004095	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
264201004096	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
264201004097	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
264201004098	BTB/POZ domain; Region: BTB; cl02518
264201004099	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004100	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004101	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004102	Putative rRNA methylase; Region: rRNA_methylase; pfam06962
264201004103	DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; Region: DnaQ_like_exo; cl10012
264201004104	active site
264201004105	catalytic site [active]
264201004106	substrate binding site [chemical binding]; other site
264201004107	transcription antitermination factor NusB; Region: nusB; TIGR01951
264201004108	UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional; Region: murB; PRK13905
264201004109	FAD binding domain; Region: FAD_binding_4; pfam01565
264201004110	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; Region: MurB_C; pfam02873
264201004111	Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]; Region: COG0613
264201004112	Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound; Region: PHP_HisPPase_AMP; cd07438
264201004113	active site
264201004114	Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound; Region: PHP_HisPPase_AMP; cd07438
264201004115	Folylpolyglutamate synthase [Coenzyme metabolism]; Region: FolC; COG0285
264201004116	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
264201004117	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
264201004118	Cytochrome oxidase subunit II; Region: Cyto_ox_2; pfam02322
264201004119	cytochrome d ubiquinol oxidase subunit 2; Provisional; Region: PRK15003; cl12219
264201004120	cytochrome d ubiquinol oxidase subunit 2; Provisional; Region: PRK15003; cl12219
264201004121	Bacterial Cytochrome Ubiquinol Oxidase; Region: Bac_Ubq_Cox; pfam01654
264201004122	dihydropteroate synthase; Region: DHPS; TIGR01496
264201004123	DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and...; Region: DHPS; cd00739
264201004124	substrate binding pocket [chemical binding]; other site
264201004125	dimer interface [polypeptide binding]; other site
264201004126	inhibitor binding site; inhibition site
264201004127	Uncharacterized conserved protein [Function unknown]; Region: COG1624
264201004128	DisA bacterial checkpoint controller nucleotide-binding; Region: DisA_N; pfam02457
264201004129	RNA methyltransferase, RsmE family; Region: TIGR00046
264201004130	RNA methyltransferase; Region: Methyltrans_RNA; pfam04452
264201004131	pyruvate kinase; Provisional; Region: PRK06354
264201004132	Pyruvate kinase (PK):  Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl17342
264201004133	domain interfaces; other site
264201004134	active site
264201004135	PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; cl17700
264201004136	DDE superfamily endonuclease; Region: DDE_3; pfam13358
264201004137	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3335
264201004138	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
264201004139	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
264201004140	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
264201004141	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
264201004142	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
264201004143	ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2; Region: Pat_ExoU_VipD_like; cd07207
264201004144	active site
264201004145	nucleophile elbow; other site
264201004146	NB-ARC domain; Region: NB-ARC; pfam00931
264201004147	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201004148	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cl02429
264201004149	binding surface
264201004150	TPR motif; other site
264201004151	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201004152	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201004153	excinuclease ABC subunit A; Reviewed; Region: uvrA; PRK00349
264201004154	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
264201004155	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
264201004156	ATP-binding cassette domain II of the excision repair protein UvrA; Region: ABC_UvrA_II; cd03271
264201004157	excinuclease ABC subunit A; Reviewed; Region: uvrA; PRK00349
264201004158	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
264201004159	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
264201004160	ATP-binding cassette domain II of the excision repair protein UvrA; Region: ABC_UvrA_II; cd03271
264201004161	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
264201004162	Major Facilitator Superfamily; Region: MFS_1; pfam07690
264201004163	putative substrate translocation pore; other site
264201004164	serine/threonine-protein kinase; Reviewed; Region: pknD; PRK13184
264201004165	Catalytic domain of Protein Kinases; Region: PKc; cd00180
264201004166	active site
264201004167	ATP binding site [chemical binding]; other site
264201004168	substrate binding site [chemical binding]; other site
264201004169	activation loop (A-loop); other site
264201004170	ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+; Region: ADPRase_NUDT5; cd03424
264201004171	dimer interface [polypeptide binding]; other site
264201004172	ADP-ribose binding site [chemical binding]; other site
264201004173	active site
264201004174	nudix motif; other site
264201004175	metal binding site [ion binding]; metal-binding site
264201004176	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201004177	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004178	HTH-like domain; Region: HTH_21; pfam13276
264201004179	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: Tra5; COG2801
264201004180	Integrase core domain; Region: rve_3; pfam13683
264201004181	RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably...; Region: RING; cl17238
264201004182	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201004183	valyl-tRNA synthetase; Reviewed; Region: valS; PRK05729
264201004184	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
264201004185	active site
264201004186	HIGH motif; other site
264201004187	nucleotide binding site [chemical binding]; other site
264201004188	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
264201004189	catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817
264201004190	active site
264201004191	KMSKS motif; other site
264201004192	Anticodon-binding domain of valyl tRNA synthetases; Region: Anticodon_Ia_Val; cd07962
264201004193	tRNA binding surface [nucleotide binding]; other site
264201004194	anticodon binding site; other site
264201004195	Valyl tRNA synthetase tRNA binding arm; Region: Val_tRNA-synt_C; pfam10458
264201004196	sporadically distributed protein, TIGR04141 family; Region: TIGR04141
264201004197	Na+/alanine symporter [Amino acid transport and metabolism]; Region: AlsT; COG1115
264201004198	Sodium:alanine symporter family; Region: Na_Ala_symp; cl00548
264201004199	Na+/alanine symporter [Amino acid transport and metabolism]; Region: AlsT; COG1115
264201004200	amino acid carrier protein; Region: agcS; TIGR00835
264201004201	phospho-2-dehydro-3-deoxyheptonate aldolase; Validated; Region: PRK09261
264201004202	DAHP synthetase I family; Region: DAHP_synth_1; pfam00793
264201004203	fumarate hydratase; Reviewed; Region: fumC; PRK00485
264201004204	Class II fumarases; Region: Fumarase_classII; cd01362
264201004205	active site
264201004206	tetramer interface [polypeptide binding]; other site
264201004207	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
264201004208	Sel1-like repeats; Region: SEL1; smart00671
264201004209	Sel1 repeat; Region: Sel1; cl02723
264201004210	Sel1-like repeats; Region: SEL1; smart00671
264201004211	o-succinylbenzoate synthase; Region: menC_gamma/gm+; TIGR01927
264201004212	o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway; Region: OSBS; cd03320
264201004213	active site
264201004214	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201004215	Flavodoxin domain; Region: Flavodoxin_5; cl17428
264201004216	BTB/POZ domain; Region: BTB; cl02518
264201004217	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004218	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004219	F0F1 ATP synthase subunit epsilon; Validated; Region: atpC; PRK00571
264201004220	mitochondrial ATP synthase delta subunit; Region: F1-ATPase_delta; cd12152
264201004221	gamma subunit interface [polypeptide binding]; other site
264201004222	epsilon subunit interface [polypeptide binding]; other site
264201004223	LBP interface [polypeptide binding]; other site
264201004224	F0F1 ATP synthase subunit beta; Validated; Region: PRK09280
264201004225	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
264201004226	F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a...; Region: F1-ATPase_beta; cd01133
264201004227	alpha subunit interaction interface [polypeptide binding]; other site
264201004228	Walker A motif; other site
264201004229	ATP binding site [chemical binding]; other site
264201004230	Walker B motif; other site
264201004231	inhibitor binding site; inhibition site
264201004232	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
264201004233	mitochondrial ATP synthase gamma subunit; Region: F1-ATPase_gamma; cd12151
264201004234	core domain interface [polypeptide binding]; other site
264201004235	delta subunit interface [polypeptide binding]; other site
264201004236	epsilon subunit interface [polypeptide binding]; other site
264201004237	F0F1 ATP synthase subunit alpha; Validated; Region: PRK09281
264201004238	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
264201004239	F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to...; Region: F1_ATPase_alpha; cd01132
264201004240	beta subunit interaction interface [polypeptide binding]; other site
264201004241	Walker A motif; other site
264201004242	ATP binding site [chemical binding]; other site
264201004243	Walker B motif; other site
264201004244	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
264201004245	F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]; Region: AtpH; COG0712
264201004246	ATP synthase delta (OSCP) subunit; Region: OSCP; pfam00213
264201004247	F0F1-type ATP synthase, subunit b [Energy production and conversion]; Region: AtpF; COG0711
264201004248	F0F1 ATP synthase subunit B; Validated; Region: PRK05759
264201004249	F0F1 ATP synthase subunit C; Provisional; Region: PRK13469
264201004250	F0F1-type ATP synthase, subunit a [Energy production and conversion]; Region: AtpB; COG0356
264201004251	F0F1 ATP synthase subunit A; Validated; Region: PRK05815
264201004252	V-type ATP synthase subunit K; Provisional; Region: PRK09621
264201004253	V-type ATP synthase subunit I; Validated; Region: PRK05771
264201004254	V-type ATP synthase subunit D; Provisional; Region: PRK02195
264201004255	V-type ATP synthase subunit B; Provisional; Region: PRK02118
264201004256	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
264201004257	V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi...; Region: V_A-ATPase_B; cd01135
264201004258	Walker A motif homologous position; other site
264201004259	Walker B motif; other site
264201004260	V-type ATP synthase subunit A; Provisional; Region: PRK04192
264201004261	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
264201004262	V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction.  The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi...; Region: V_A-ATPase_A; cd01134
264201004263	Walker A motif/ATP binding site; other site
264201004264	Walker B motif; other site
264201004265	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
264201004266	Protein of unknown function (DUF2764); Region: DUF2764; pfam10962
264201004267	V-type ATP synthase subunit E; Provisional; Region: PRK01005
264201004268	V-type ATP synthase subunit E; Provisional; Region: PRK01558
264201004269	Transposase DDE domain; Region: DDE_Tnp_1_3; pfam13612
264201004270	transaldolase-like protein; Provisional; Region: PTZ00411
264201004271	Transaldolases including both TalA and TalB; Region: Transaldolase_TalAB; cd00957
264201004272	active site
264201004273	dimer interface [polypeptide binding]; other site
264201004274	catalytic residue [active]
264201004275	Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases; Region: FDH_GDH_like; cl17240
264201004276	Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]; Region: Ugd; COG1004
264201004277	NAD binding site [chemical binding]; other site
264201004278	UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984
264201004279	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; Region: UDPG_MGDP_dh_C; pfam03720
264201004280	Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]; Region: IspA; COG0142
264201004281	Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685
264201004282	substrate binding pocket [chemical binding]; other site
264201004283	chain length determination region; other site
264201004284	substrate-Mg2+ binding site; other site
264201004285	catalytic residues [active]
264201004286	aspartate-rich region 1; other site
264201004287	active site lid residues [active]
264201004288	aspartate-rich region 2; other site
264201004289	exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Region: EPS_sugtrans; TIGR03025
264201004290	Bacterial sugar transferase; Region: Bac_transf; pfam02397
264201004291	recombination factor protein RarA; Reviewed; Region: PRK13342
264201004292	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201004293	Walker A motif; other site
264201004294	ATP binding site [chemical binding]; other site
264201004295	Walker B motif; other site
264201004296	arginine finger; other site
264201004297	MgsA AAA+ ATPase C terminal; Region: MgsA_C; pfam12002
264201004298	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]; Region: FolD; COG0190
264201004299	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; Region: THF_DHG_CYH; pfam00763
264201004300	NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase; Region: NAD_bind_m-THF_DH_Cyclohyd; cd01080
264201004301	homodimer interface [polypeptide binding]; other site
264201004302	NADP binding site [chemical binding]; other site
264201004303	substrate binding site [chemical binding]; other site
264201004304	Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]; Region: ApbE; COG1477
264201004305	ApbE family; Region: ApbE; pfam02424
264201004306	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cl17220
264201004307	putative Zn2+ binding site [ion binding]; other site
264201004308	DNA polymerase III subunit beta; Validated; Region: PRK05643
264201004309	Beta clamp domain.  The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria.  The beta-clamp is structurally similar to the trimeric...; Region: beta_clamp; cd00140
264201004310	putative DNA binding surface [nucleotide binding]; other site
264201004311	dimer interface [polypeptide binding]; other site
264201004312	beta-clamp/clamp loader binding surface; other site
264201004313	beta-clamp/translesion DNA polymerase binding surface; other site
264201004314	recombination protein F; Reviewed; Region: recF; PRK00064
264201004315	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
264201004316	Walker A/P-loop; other site
264201004317	ATP binding site [chemical binding]; other site
264201004318	Q-loop/lid; other site
264201004319	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
264201004320	ABC transporter signature motif; other site
264201004321	Walker B; other site
264201004322	D-loop; other site
264201004323	H-loop/switch region; other site
264201004324	Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing stalled ribosome from damaged messenger RNAs; Region: SmpB; cd09294
264201004325	SmpB-tmRNA interface; other site
264201004326	rRNA large subunit methyltransferase; Provisional; Region: PRK00103
264201004327	Integral membrane protein (PIN domain superfamily) [General function prediction only]; Region: COG4956
264201004328	PIN (PilT N terminus) domain: Superfamily; Region: PIN_SF; cl14812
264201004329	putative active site [active]
264201004330	4'-phosphopantetheinyl transferase; Provisional; Region: acpS; PRK00070
264201004331	thioredoxin-disulfide reductase; Region: TRX_reduct; TIGR01292
264201004332	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
264201004333	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
264201004334	Predicted symporter [General function prediction only]; Region: DhlC; COG4147
264201004335	Na(+)/proline cotransporter PutP and related proteins; solute binding domain; Region: SLC5sbd_PutP; cd11475
264201004336	Na binding site [ion binding]; other site
264201004337	acyl carrier protein; Provisional; Region: acpP; PRK00982
264201004338	beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; Region: BKR_SDR_c; cd05333
264201004339	3-oxoacyl-(acyl-carrier-protein) reductase; Region: 3oxo_ACP_reduc; TIGR01830
264201004340	NAD(P) binding site [chemical binding]; other site
264201004341	homotetramer interface [polypeptide binding]; other site
264201004342	homodimer interface [polypeptide binding]; other site
264201004343	active site
264201004344	(acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]; Region: FabD; COG0331
264201004345	malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128
264201004346	3-oxoacyl-(acyl carrier protein) synthase III; Reviewed; Region: PRK09352
264201004347	Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl...; Region: KAS_III; cd00830
264201004348	dimer interface [polypeptide binding]; other site
264201004349	active site
264201004350	CoA binding pocket [chemical binding]; other site
264201004351	PT repeat; Region: PT; pfam04886
264201004352	Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence...; Region: PP2Cc; cl00120
264201004353	recombination protein RecR; Reviewed; Region: recR; PRK00076
264201004354	RecR protein; Region: RecR; pfam02132
264201004355	TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR.  RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a...; Region: TOPRIM_recR; cd01025
264201004356	putative active site [active]
264201004357	putative metal-binding site [ion binding]; other site
264201004358	tetramer interface [polypeptide binding]; other site
264201004359	Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]; Region: COG4775
264201004360	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
264201004361	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
264201004362	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
264201004363	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
264201004364	Surface antigen; Region: Bac_surface_Ag; pfam01103
264201004365	Outer membrane protein (OmpH-like); Region: OmpH; pfam03938
264201004366	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional; Region: lpxD; PRK00892
264201004367	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Region: LpxD; pfam04613
264201004368	UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2; Region: LbH_LpxD; cd03352
264201004369	trimer interface [polypeptide binding]; other site
264201004370	active site
264201004371	UDP-GlcNAc binding site [chemical binding]; other site
264201004372	lipid binding site [chemical binding]; lipid-binding site
264201004373	Protein phosphatase 2C; Region: PP2C; pfam00481
264201004374	Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence...; Region: PP2Cc; cd00143
264201004375	active site
264201004376	branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed; Region: PRK11856
264201004377	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
264201004378	E3 interaction surface; other site
264201004379	lipoyl attachment site [posttranslational modification]; other site
264201004380	e3 binding domain; Region: E3_binding; pfam02817
264201004381	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
264201004382	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]; Region: AcoB; COG0022
264201004383	Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins; Region: TPP_PYR_E1-PDHc-beta_like; cd07036
264201004384	alpha subunit interface [polypeptide binding]; other site
264201004385	TPP binding site [chemical binding]; other site
264201004386	heterodimer interface [polypeptide binding]; other site
264201004387	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
264201004388	pyruvate dehydrogenase E1 component, alpha subunit; Region: PDH_E1_alph_y; TIGR03182
264201004389	Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain...; Region: TPP_E1_PDC_ADC_BCADC; cd02000
264201004390	tetramer interface [polypeptide binding]; other site
264201004391	TPP-binding site [chemical binding]; other site
264201004392	heterodimer interface [polypeptide binding]; other site
264201004393	phosphorylation loop region [posttranslational modification]
264201004394	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
264201004395	Sodium:dicarboxylate symporter family; Region: SDF; pfam00375
264201004396	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins; Region: PLPDE_III_YBL036c_like; cd00635
264201004397	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
264201004398	catalytic residue [active]
264201004399	hypothetical protein; Provisional; Region: PRK13665
264201004400	NfeD-like C-terminal, partner-binding; Region: NfeD; cl00686
264201004401	Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]; Region: AccA; cl17345
264201004402	Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease; Region: Clp_protease_NfeD_like; cd07021
264201004403	active site residues [active]
264201004404	glutamate-1-semialdehyde aminotransferase; Provisional; Region: PRK00062
264201004405	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
264201004406	inhibitor-cofactor binding pocket; inhibition site
264201004407	pyridoxal 5'-phosphate binding site [chemical binding]; other site
264201004408	catalytic residue [active]
264201004409	Outer membrane protein [Cell envelope biogenesis, outer membrane]; Region: COG0729
264201004410	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
264201004411	Surface antigen; Region: Bac_surface_Ag; pfam01103
264201004412	Family of unknown function (DUF490); Region: DUF490; pfam04357
264201004413	Family of unknown function (DUF490); Region: DUF490; pfam04357
264201004414	ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2B; COG0767
264201004415	Permease; Region: Permease; pfam02405
264201004416	cobalt transport protein ATP-binding subunit; Region: cbiO; TIGR01166
264201004417	ATP-binding cassette transport system involved in resistant to organic solvents; Region: ABC_Org_Solvent_Resistant; cd03261
264201004418	Walker A/P-loop; other site
264201004419	ATP binding site [chemical binding]; other site
264201004420	Q-loop/lid; other site
264201004421	ABC transporter signature motif; other site
264201004422	Walker B; other site
264201004423	D-loop; other site
264201004424	H-loop/switch region; other site
264201004425	mce related protein; Region: MCE; pfam02470
264201004426	ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2C; COG1463
264201004427	hypothetical protein; Validated; Region: PRK00228
264201004428	30S ribosomal protein S9; Reviewed; Region: rpsI; PRK00132
264201004429	Ribosomal protein L13.  Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the...; Region: Ribosomal_L13; cd00392
264201004430	23S rRNA interface [nucleotide binding]; other site
264201004431	L3 interface [polypeptide binding]; other site
264201004432	(dimethylallyl)adenosine tRNA methylthiotransferase; Provisional; Region: PRK14328
264201004433	Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919
264201004434	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
264201004435	FeS/SAM binding site; other site
264201004436	Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the...; Region: Cu-Zn_Superoxide_Dismutase; cd00305
264201004437	E-class dimer interface [polypeptide binding]; other site
264201004438	Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]; Region: SodC; COG2032
264201004439	P-class dimer interface [polypeptide binding]; other site
264201004440	active site
264201004441	Cu2+ binding site [ion binding]; other site
264201004442	Zn2+ binding site [ion binding]; other site
264201004443	NAD-dependent DNA ligase LigA; Validated; Region: ligA; PRK07956
264201004444	NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction...; Region: LIGANc; cd00114
264201004445	nucleotide binding pocket [chemical binding]; other site
264201004446	K-X-D-G motif; other site
264201004447	catalytic site [active]
264201004448	NAD-dependent DNA ligase OB-fold domain; Region: DNA_ligase_OB; pfam03120
264201004449	NAD-dependent DNA ligase C4 zinc finger domain; Region: DNA_ligase_ZBD; pfam03119
264201004450	Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo...; Region: BRCT; cd00027
264201004451	Dimer interface [polypeptide binding]; other site
264201004452	BRCT sequence motif; other site
264201004453	glycogen branching enzyme; Provisional; Region: PRK05402
264201004454	Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus; Region: E_set; cl09101
264201004455	N-terminal Early set domain associated with the catalytic domain of prokaryotic glycogen branching enzyme; Region: E_set_GBE_prok_N; cd02855
264201004456	Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme); Region: AmyAc_Glg_BE; cd11322
264201004457	active site
264201004458	catalytic site [active]
264201004459	Alpha amylase, C-terminal all-beta domain; Region: Alpha-amylase_C; pfam02806
264201004460	Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919
264201004461	MiaB-like tRNA modifying enzyme; Region: MiaB-like-C; TIGR01579
264201004462	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
264201004463	FeS/SAM binding site; other site
264201004464	hypothetical protein; Reviewed; Region: PRK00024
264201004465	Mov34/MPN/PAD-1 family; Region: MPN_DUF2466; cd08071
264201004466	MPN+ (JAMM) motif; other site
264201004467	Zinc-binding site [ion binding]; other site
264201004468	GTP-binding protein HflX; Region: GTP_HflX; TIGR03156
264201004469	GTP-binding GTPase N-terminal; Region: GTP-bdg_N; pfam13167
264201004470	HflX GTPase family; Region: HflX; cd01878
264201004471	G1 box; other site
264201004472	GTP/Mg2+ binding site [chemical binding]; other site
264201004473	Switch I region; other site
264201004474	G2 box; other site
264201004475	G3 box; other site
264201004476	Switch II region; other site
264201004477	G4 box; other site
264201004478	G5 box; other site
264201004479	putative hydrolase; Provisional; Region: PRK02113
264201004480	Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]; Region: PhnP; COG1235
264201004481	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
264201004482	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
264201004483	type I citrate synthase; Reviewed; Region: PRK09569
264201004484	Citrate synthase; Region: Citrate_synt; pfam00285
264201004485	oxalacetate binding site [chemical binding]; other site
264201004486	citrylCoA binding site [chemical binding]; other site
264201004487	coenzyme A binding site [chemical binding]; other site
264201004488	catalytic triad [active]
264201004489	malate dehydrogenase; Provisional; Region: PRK05442
264201004490	Chloroplast-like malate dehydrogenases; Region: MDH_choloroplast_like; cd01338
264201004491	NAD(P) binding site [chemical binding]; other site
264201004492	dimer interface [polypeptide binding]; other site
264201004493	malate binding site [chemical binding]; other site
264201004494	Domain of unknown function (DUF1768); Region: DUF1768; cl01271
264201004495	Domain of unknown function (DUF2431); Region: DUF2431; pfam10354
264201004496	Uncharacterized protein family (UPF0233); Region: UPF0233; cl11506
264201004497	KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose...; Region: SIS_Kpsf; cd05014
264201004498	KpsF/GutQ family protein; Region: kpsF; TIGR00393
264201004499	putative active site [active]
264201004500	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein.  These APIs catalyze the conversion of the pentose pathway...; Region: CBS_pair_KpsF_GutQ_assoc; cd04604
264201004501	isocitrate dehydrogenase; Validated; Region: PRK09222
264201004502	Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]; Region: LeuB; COG0473
264201004503	Glycosyl transferase family 8; Region: Glyco_transf_8; pfam01501
264201004504	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
264201004505	Sodium:dicarboxylate symporter family; Region: SDF; pfam00375
264201004506	Tetraacyldisaccharide-1-P 4'-kinase; Region: LpxK; pfam02606
264201004507	tetraacyldisaccharide 4'-kinase; Region: lpxK; TIGR00682
264201004508	Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of...; Region: SIS_GmhA; cd05006
264201004509	dimer interface [polypeptide binding]; other site
264201004510	active site
264201004511	Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic...; Region: PRX_like1; cd02969
264201004512	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
264201004513	putative catalytic residue [active]
264201004514	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
264201004515	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
264201004516	active site
264201004517	rRNA methylases [Translation, ribosomal structure and biogenesis]; Region: SpoU; COG0566
264201004518	RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; smart00967
264201004519	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
264201004520	Predicted SAM-dependent methyltransferases [General function prediction only]; Region: COG1092
264201004521	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
264201004522	nucleotide binding site [chemical binding]; other site
264201004523	Lipoprotein signal peptidase [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: LspA; COG0597
264201004524	DnaK suppressor protein [Signal transduction mechanisms]; Region: DksA; COG1734
264201004525	transcriptional regulator NrdR; Validated; Region: nrdR; PRK00464
264201004526	ATP cone domain; Region: ATP-cone; pfam03477
264201004527	tRNA methyl transferase; Region: tRNA_Me_trans; pfam03054
264201004528	tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs; Region: tRNA_Me_trans; cd01998
264201004529	Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153
264201004530	metal binding site 2 [ion binding]; metal-binding site
264201004531	putative DNA binding helix; other site
264201004532	metal binding site 1 [ion binding]; metal-binding site
264201004533	dimer interface [polypeptide binding]; other site
264201004534	structural Zn2+ binding site [ion binding]; other site
264201004535	Predicted Rossmann fold nucleotide-binding protein [General function prediction only]; Region: COG1611
264201004536	Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: IbpA; COG0071
264201004537	Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain  (ACD). sHsps are generally...; Region: ACD_sHsps-like; cd06464
264201004538	putative dimer interface [polypeptide binding]; other site
264201004539	Metal binding protein ZntC.  These proteins are predicted to function as initial receptors in ABC transport of metal ions.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding...; Region: ZntC; cd01018
264201004540	Periplasmic solute binding protein family; Region: SBP_bac_9; pfam01297
264201004541	putative metal binding residues [ion binding]; other site
264201004542	ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: COG3638
264201004543	ATP-binding cassette domain of the metal-type transporters; Region: ABC_Metallic_Cations; cd03235
264201004544	ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108
264201004545	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
264201004546	ABC-ATPase subunit  interface; other site
264201004547	dimer interface [polypeptide binding]; other site
264201004548	putative PBP binding regions; other site
264201004549	NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]; Region: Ndh; COG1252
264201004550	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
264201004551	replicative DNA helicase; Provisional; Region: PRK06321
264201004552	DnaB-like helicase N terminal domain; Region: DnaB; pfam00772
264201004553	DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a...; Region: DnaB_C; cd00984
264201004554	Walker A motif; other site
264201004555	ATP binding site [chemical binding]; other site
264201004556	Walker B motif; other site
264201004557	DNA binding loops [nucleotide binding]
264201004558	Fic family protein [Function unknown]; Region: COG3177
264201004559	Fic/DOC family; Region: Fic; pfam02661
264201004560	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
264201004561	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
264201004562	DNA binding residues [nucleotide binding]
264201004563	dimerization interface [polypeptide binding]; other site
264201004564	Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]; Region: COG1293
264201004565	Domain of unknown function (DUF814); Region: DUF814; pfam05670
264201004566	F-box-like; Region: F-box-like; pfam12937
264201004567	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004568	S-adenosylmethionine synthetase, C-terminal domain; Region: S-AdoMet_synt_C; pfam02773
264201004569	S-adenosylmethionine synthetase, N-terminal domain; Region: S-AdoMet_synt_N; pfam00438
264201004570	DNA Polymerase IV/Kappa; Region: PolY_Pol_IV_kappa; cd03586
264201004571	active site
264201004572	DNA polymerase IV; Validated; Region: PRK02406
264201004573	DNA binding site [nucleotide binding]
264201004574	Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain; Region: SLC5sbd; cd10322
264201004575	Na binding site [ion binding]; other site
264201004576	BioY family; Region: BioY; pfam02632
264201004577	Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Region: BglX; COG1472
264201004578	Glycosyl hydrolase family 3 N terminal domain; Region: Glyco_hydro_3; pfam00933
264201004579	Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr; Region: PTPc; cl00053
264201004580	Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285
264201004581	nucleoside/Zn binding site; other site
264201004582	dimer interface [polypeptide binding]; other site
264201004583	catalytic motif [active]
264201004584	Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]; Region: COG3823
264201004585	Predicted O-methyltransferase [General function prediction only]; Region: COG4122
264201004586	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
264201004587	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201004588	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004589	ATP-dependent DNA ligase; Reviewed; Region: ligD; PRK05972
264201004590	DNA ligase D, 3'-phosphoesterase domain; Region: LigD_PE_dom; TIGR02777
264201004591	Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases; Region: Adenylation_DNA_ligase_LigD_LigC; cd07906
264201004592	active site
264201004593	DNA binding site [nucleotide binding]
264201004594	The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit; Region: OBF_DNA_ligase_LigD; cd07971
264201004595	DNA binding site [nucleotide binding]
264201004596	LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required...; Region: LigD_Pol_like_2; cd04865
264201004597	nucleotide binding site [chemical binding]; other site
264201004598	Adenosine deaminase [Nucleotide transport and metabolism]; Region: Ada; COG2169
264201004599	Metal binding domain of Ada; Region: Ada_Zn_binding; pfam02805
264201004600	AlkA N-terminal domain; Region: AlkA_N; pfam06029
264201004601	3-methyl-adenine DNA glycosylase II; Provisional; Region: PRK10308
264201004602	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
264201004603	minor groove reading motif; other site
264201004604	helix-hairpin-helix signature motif; other site
264201004605	substrate binding pocket [chemical binding]; other site
264201004606	active site
264201004607	The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445
264201004608	DNA binding site [nucleotide binding]
264201004609	active site
264201004610	Protein of unknown function (DUF1761); Region: DUF1761; pfam08570
264201004611	Lipoate-protein ligase A [Coenzyme metabolism]; Region: LplA; COG0095
264201004612	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated; Region: PRK05192
264201004613	Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]; Region: GlpB; cl17730
264201004614	tRNA (uracil-5-)-methyltransferase Gid; Reviewed; Region: PRK05335
264201004615	GidA associated domain 3; Region: GIDA_assoc_3; pfam13932
264201004616	Dolichyl-phosphate-mannose-protein mannosyltransferase; Region: PMT_2; pfam13231
264201004617	succinate dehydrogenase iron-sulfur subunit; Reviewed; Region: sdhB; PRK08640
264201004618	2Fe-2S iron-sulfur cluster binding domain; Region: Fer2_3; pfam13085
264201004619	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
264201004620	succinate dehydrogenase flavoprotein subunit; Reviewed; Region: sdhA; PRK08641
264201004621	L-aspartate oxidase; Provisional; Region: PRK06175
264201004622	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
264201004623	Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Bacillus subtilis...; Region: SQR_TypeB_1_TM; cd03497
264201004624	putative Iron-sulfur protein interface [polypeptide binding]; other site
264201004625	proximal heme binding site [chemical binding]; other site
264201004626	putative dimer interface [polypeptide binding]; other site
264201004627	Succinate:quinone oxidoreductase (SQR) and Quinol:fumarate reductase (QFR) family, transmembrane subunits; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol, while QFR catalyzes the reverse reaction. SQR; Region: SQR_QFR_TM; cl00881
264201004628	proximal heme binding site [chemical binding]; other site
264201004629	Iron-sulfur protein interface; other site
264201004630	TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310
264201004631	active site
264201004632	Disulphide bond corrector protein DsbC; Region: DsbC; cl15830
264201004633	Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]; Region: COG4232
264201004634	Cytochrome C biogenesis protein transmembrane region; Region: DsbD; cl15788
264201004635	DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD...; Region: DsbDgamma; cd02953
264201004636	DsbD alpha interface [polypeptide binding]; other site
264201004637	catalytic residues [active]
264201004638	Biopolymer transport proteins [Intracellular trafficking and secretion]; Region: TolQ; COG0811
264201004639	Biopolymer transport protein [Intracellular trafficking and secretion]; Region: ExbD; COG0848
264201004640	Biopolymer transport protein ExbD/TolR; Region: ExbD; pfam02472
264201004641	Gram-negative bacterial tonB protein; Region: TonB; cl10048
264201004642	translocation protein TolB; Provisional; Region: tolB; PRK01029
264201004643	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
264201004644	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
264201004645	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
264201004646	Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885
264201004647	ligand binding site [chemical binding]; other site
264201004648	FOG: LysM repeat [Cell envelope biogenesis, outer membrane]; Region: LytE; COG1388
264201004649	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
264201004650	glutamate racemase; Provisional; Region: PRK00865
264201004651	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
264201004652	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
264201004653	active site
264201004654	phosphorylation site [posttranslational modification]
264201004655	intermolecular recognition site; other site
264201004656	dimerization interface [polypeptide binding]; other site
264201004657	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
264201004658	DNA binding site [nucleotide binding]
264201004659	EamA-like transporter family; Region: EamA; pfam00892
264201004660	Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950
264201004661	EamA-like transporter family; Region: EamA; pfam00892
264201004662	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201004663	TPR motif; other site
264201004664	binding surface
264201004665	zinc-ribbon domain; Region: zinc_ribbon_2; pfam13240
264201004666	Double zinc ribbon; Region: DZR; pfam12773
264201004667	Transglutaminase family; Region: Transglut_N; pfam00868
264201004668	N6-adenine-specific methylase [DNA replication, recombination, and repair]; Region: COG0742
264201004669	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201004670	S-adenosylmethionine binding site [chemical binding]; other site
264201004671	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
264201004672	putative substrate translocation pore; other site
264201004673	Major Facilitator Superfamily; Region: MFS_1; pfam07690
264201004674	hypothetical protein; Provisional; Region: PRK05409
264201004675	Uncharacterized protein conserved in bacteria (DUF2063); Region: DUF2063; cl01262
264201004676	Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]; Region: yfiH; COG1496
264201004677	Multi-copper polyphenol oxidoreductase laccase; Region: Cu-oxidase_4; pfam02578
264201004678	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
264201004679	catalytic core [active]
264201004680	Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]; Region: TagB; COG1887
264201004681	ATP:guanido phosphotransferase; Provisional; Region: PRK01059
264201004682	Phosphagen (guanidino) kinases; Region: phosphagen_kinases; cl02823
264201004683	ADP binding site [chemical binding]; other site
264201004684	phosphagen binding site; other site
264201004685	substrate specificity loop; other site
264201004686	Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]; Region: COG3880
264201004687	UvrB/uvrC motif; Region: UVR; pfam02151
264201004688	ribosome recycling factor; Reviewed; Region: frr; PRK00083
264201004689	Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation.  Thus ribosomes are "recycled" and ready for another...; Region: RRF; cd00520
264201004690	hinge region; other site
264201004691	UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and...; Region: AAK_UMPK-PyrH-Ec; cd04254
264201004692	putative nucleotide binding site [chemical binding]; other site
264201004693	uridine monophosphate binding site [chemical binding]; other site
264201004694	homohexameric interface [polypeptide binding]; other site
264201004695	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
264201004696	Protein of unknown function (DUF3442); Region: DUF3442; pfam11924
264201004697	Xaa-Pro aminopeptidase [Amino acid transport and metabolism]; Region: PepP; COG0006
264201004698	Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321
264201004699	Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline; Region: APP-like; cd01092
264201004700	active site
264201004701	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: VicK; COG5002
264201004702	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
264201004703	putative active site [active]
264201004704	heme pocket [chemical binding]; other site
264201004705	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
264201004706	dimer interface [polypeptide binding]; other site
264201004707	phosphorylation site [posttranslational modification]
264201004708	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
264201004709	ATP binding site [chemical binding]; other site
264201004710	Mg2+ binding site [ion binding]; other site
264201004711	G-X-G motif; other site
264201004712	MoxR-like ATPases [General function prediction only]; Region: COG0714
264201004713	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
264201004714	Walker A motif; other site
264201004715	ATP binding site [chemical binding]; other site
264201004716	Walker B motif; other site
264201004717	arginine finger; other site
264201004718	Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]; Region: COG1721
264201004719	Protein of unknown function DUF58; Region: DUF58; pfam01882
264201004720	Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057
264201004721	metal ion-dependent adhesion site (MIDAS); other site
264201004722	Outer membrane protein W [Cell envelope biogenesis, outer membrane]; Region: OmpW; COG3047
264201004723	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
264201004724	ABC-2 type transporter; Region: ABC2_membrane; pfam01061
264201004725	ABC-2 family transporter protein; Region: ABC2_membrane_3; pfam12698
264201004726	ABC-2 family transporter protein; Region: ABC2_membrane_2; pfam12679
264201004727	ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131
264201004728	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
264201004729	Walker A/P-loop; other site
264201004730	ATP binding site [chemical binding]; other site
264201004731	Q-loop/lid; other site
264201004732	ABC transporter signature motif; other site
264201004733	Walker B; other site
264201004734	D-loop; other site
264201004735	H-loop/switch region; other site
264201004736	ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]; Region: NatA; COG4555
264201004737	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
264201004738	Walker A/P-loop; other site
264201004739	ATP binding site [chemical binding]; other site
264201004740	Q-loop/lid; other site
264201004741	ABC transporter signature motif; other site
264201004742	Walker B; other site
264201004743	D-loop; other site
264201004744	H-loop/switch region; other site
264201004745	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
264201004746	HlyD family secretion protein; Region: HlyD_3; pfam13437
264201004747	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201004748	S-adenosylmethionine binding site [chemical binding]; other site
264201004749	Tfp pilus assembly protein PilV [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilV; COG4967
264201004750	type II secretion system protein G; Region: typeII_sec_gspG; TIGR01710
264201004751	Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulF; COG1459
264201004752	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
264201004753	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
264201004754	Type II secretion system (T2SS), protein E, N-terminal domain; Region: T2SE_Nter; pfam05157
264201004755	Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulE; COG2804
264201004756	PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129
264201004757	Walker A motif; other site
264201004758	ATP binding site [chemical binding]; other site
264201004759	Walker B motif; other site
264201004760	type II secretion system protein D; Region: type_II_gspD; TIGR02517
264201004761	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
264201004762	RNA polymerase factor sigma-54; Reviewed; Region: PRK05932
264201004763	Sigma-54 factor, Activator interacting domain (AID); Region: Sigma54_AID; pfam00309
264201004764	Sigma-54 factor, core binding domain; Region: Sigma54_CBD; pfam04963
264201004765	Sigma-54, DNA binding domain; Region: Sigma54_DBD; pfam04552
264201004766	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
264201004767	SH3 domain protein; Region: SH3_and_anchor; TIGR04211
264201004768	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3041; cl17396
264201004769	BTB/POZ domain; Region: BTB; cl02518
264201004770	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004771	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004772	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004773	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004774	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004775	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
264201004776	DNA binding site [nucleotide binding]
264201004777	active site
264201004778	Int/Topo IB signature motif; other site
264201004779	BTB/POZ domain; Region: BTB; cl02518
264201004780	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004781	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004782	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004783	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004784	Leucine rich repeat; Region: LRR_8; pfam13855
264201004785	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004786	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
264201004787	Ankyrin repeats (many copies); Region: Ank_4; pfam13637
264201004788	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3041; cl17396
264201004789	DNA/RNA non-specific endonuclease; prokaryotic and eukaryotic double- and single-stranded DNA and RNA endonucleases also present in phosphodiesterases.  They exists as monomers and homodimers; Region: NUC; cl00089
264201004790	BTB/POZ domain; Region: BTB; cl02518
264201004791	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004792	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004793	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004794	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004795	Leucine rich repeat; Region: LRR_8; pfam13855
264201004796	BTB/POZ domain; Region: BTB; cl02518
264201004797	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004798	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004799	Leucine rich repeat; Region: LRR_8; pfam13855
264201004800	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
264201004801	DNA binding site [nucleotide binding]
264201004802	active site
264201004803	Int/Topo IB signature motif; other site
264201004804	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
264201004805	DNA binding site [nucleotide binding]
264201004806	active site
264201004807	Int/Topo IB signature motif; other site
264201004808	catalytic residues [active]
264201004809	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004810	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004811	BTB/POZ domain; Region: BTB; cl02518
264201004812	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004813	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004814	sulfate adenylyltransferase, large subunit; Region: CysN; TIGR02034
264201004815	deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional; Region: PRK05318
264201004816	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
264201004817	Walker A/P-loop; other site
264201004818	ATP binding site [chemical binding]; other site
264201004819	ATP-dependent DNA helicase recG C-terminal; Region: HATPase_c_4; pfam13749
264201004820	F-box-like; Region: F-box-like; pfam12937
264201004821	Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins); Region: GluZincin; cl14813
264201004822	Zn binding site [ion binding]; other site
264201004823	DNA breaking-rejoining enzymes, intergrase/recombinases, C-terminal catalytic domain. The tyrosine recombinase/integrase family share the same catalytic domain containing six conserved active site residues. The best-studied members of this diverse family...; Region: INT_REC_C; cd01182
264201004824	DNA binding site [nucleotide binding]
264201004825	Int/Topo IB signature motif; other site
264201004826	active site
264201004827	catalytic residues [active]
264201004828	BTB/POZ domain; Region: BTB; cl02518
264201004829	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004830	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004831	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004832	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004833	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201004834	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004835	BTB/POZ domain; Region: BTB; cl02518
264201004836	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004837	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004838	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201004839	Tetratricopeptide repeat; Region: TPR_12; pfam13424
264201004840	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201004841	binding surface
264201004842	TPR motif; other site
264201004843	FOG: TPR repeat [General function prediction only]; Region: NrfG; COG0457
264201004844	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201004845	binding surface
264201004846	TPR motif; other site
264201004847	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
264201004848	binding surface
264201004849	TPR motif; other site
264201004850	CHAT domain; Region: CHAT; pfam12770
264201004851	Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins); Region: GluZincin; cl14813
264201004852	Zn binding site [ion binding]; other site
264201004853	Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins); Region: GluZincin; cl14813
264201004854	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
264201004855	Transposase; Region: HTH_Tnp_1; cl17663
264201004856	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
264201004857	HTH-like domain; Region: HTH_21; pfam13276
264201004858	insertion element IS2 transposase InsD; Provisional; Region: PRK14702
264201004859	Integrase core domain; Region: rve; pfam00665
264201004860	Integrase core domain; Region: rve_3; pfam13683
264201004861	Peptidase M4 family includes thermolysin, protealysin, aureolysin and neutral protease; Region: M4_neutral_protease; cd09597
264201004862	active site
264201004863	Zn binding site [ion binding]; other site
264201004864	AAA domain; Region: AAA_21; pfam13304
264201004865	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cd00267
264201004866	Q-loop/lid; other site
264201004867	ABC transporter signature motif; other site
264201004868	Walker B; other site
264201004869	D-loop; other site
264201004870	H-loop/switch region; other site
264201004871	Alpha/beta hydrolase of unknown function (DUF900); Region: DUF900; pfam05990
264201004872	Alpha/beta hydrolase of unknown function (DUF900); Region: DUF900; pfam05990
264201004873	F-box-like; Region: F-box-like; pfam12937
264201004874	FOG: WD40 repeat [General function prediction only]; Region: COG2319
264201004875	WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl02567
264201004876	structural tetrad; other site
264201004877	Outer membrane protein transport protein (OMPP1/FadL/TodX); Region: Toluene_X; cl17479
264201004878	coproporphyrinogen III oxidase; Provisional; Region: PRK05330
264201004879	Coproporphyrinogen III oxidase; Region: Coprogen_oxidas; cl17752
264201004880	Cytochrome C oxidase, mono-heme subunit/FixO; Region: FixO; cl01130
264201004881	Heme-copper oxidase subunit I.  Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane.  The superfamily is...; Region: Heme_Cu_Oxidase_I; cl00275
264201004882	Low-spin heme binding site [chemical binding]; other site
264201004883	D-pathway; other site
264201004884	Binuclear center (active site) [active]
264201004885	K-pathway; other site
264201004886	Putative proton exit pathway; other site
264201004887	HD domain; Region: HD_3; pfam13023
264201004888	Methyltransferase domain; Region: Methyltransf_31; pfam13847
264201004889	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
264201004890	S-adenosylmethionine binding site [chemical binding]; other site
264201004891	Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea; Region: Transaldolase_FSA; cd00956
264201004892	active site
264201004893	intersubunit interactions; other site
264201004894	catalytic residue [active]
264201004895	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
264201004896	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
264201004897	Uncharacterized conserved protein (COG2071); Region: DUF2071; pfam09844
264201004898	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
264201004899	FMN binding site [chemical binding]; other site
264201004900	active site
264201004901	catalytic residues [active]
264201004902	substrate binding site [chemical binding]; other site
264201004903	YGGT family; Region: YGGT; pfam02325
264201004904	type IV pilus assembly protein PilM; Region: pilM; TIGR01175
264201004905	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2849
264201004906	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2849
264201004907	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004908	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cl15309
264201004909	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004910	recombinase A; Provisional; Region: recA; PRK09354
264201004911	RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange; Region: recA; cd00983
264201004912	hexamer interface [polypeptide binding]; other site
264201004913	Walker A motif; other site
264201004914	ATP binding site [chemical binding]; other site
264201004915	Walker B motif; other site
264201004916	Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]; Region: IspA; COG0142
264201004917	Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685
264201004918	substrate binding pocket [chemical binding]; other site
264201004919	chain length determination region; other site
264201004920	substrate-Mg2+ binding site; other site
264201004921	catalytic residues [active]
264201004922	aspartate-rich region 1; other site
264201004923	active site lid residues [active]
264201004924	aspartate-rich region 2; other site
264201004925	Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that...; Region: LbH_G1P_TT_C_like; cd05636
264201004926	23S rRNA methyluridine methyltransferase; Reviewed; Region: rumB; PRK03522
264201004927	putative Mg(2+) transport ATPase; Provisional; Region: PRK09977
264201004928	MgtC family; Region: MgtC; pfam02308
264201004929	Nucleotidyl transferase of unknown function (DUF1814); Region: DUF1814; pfam08843
264201004930	Domain of unknown function (DUF4095); Region: DUF4095; pfam13338
264201004931	Predicted phosphatase/phosphohexomutase [General function prediction only]; Region: COG0637
264201004932	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
264201004933	active site
264201004934	motif I; other site
264201004935	motif II; other site
264201004936	Family 1 of Uracil-DNA glycosylase (UDG) enzymes; Region: UDG_F1; cd10027
264201004937	ligand binding site [chemical binding]; other site
264201004938	active site
264201004939	UGI interface [polypeptide binding]; other site
264201004940	catalytic site [active]
264201004941	Uncharacterized protein family (UPF0137); Region: UPF0137; pfam03677
264201004942	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
264201004943	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
264201004944	The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information...; Region: TGS; cd01616
264201004945	threonyl-tRNA synthetase; Reviewed; Region: thrS; PRK00413
264201004946	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; smart00863
264201004947	Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ThrRS_core; cd00771
264201004948	active site
264201004949	dimer interface [polypeptide binding]; other site
264201004950	motif 1; other site
264201004951	motif 2; other site
264201004952	motif 3; other site
264201004953	ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: ThrRS_anticodon; cd00860
264201004954	anticodon binding site; other site
264201004955	Fic/DOC family; Region: Fic; pfam02661
264201004956	Fic family protein [Function unknown]; Region: COG3177
264201004957	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
264201004958	Broad-Complex, Tramtrack and Bric a brac; Region: BTB; smart00225
264201004959	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004960	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004961	Antagonist of mitotic exit network protein 1; Region: AMN1; cl15308
264201004962	Tryptophan/tyrosine permease family; Region: Trp_Tyr_perm; cl17316
264201004963	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
264201004964	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
264201004965	Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins); Region: GluZincin; cl14813
264201004966	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
264201004967	non-specific DNA binding site [nucleotide binding]; other site
264201004968	salt bridge; other site
264201004969	sequence-specific DNA binding site [nucleotide binding]; other site