-- dump date 20140619_024942 -- class Genbank::CDS -- table cds_note -- id note YP_005353135.1 COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member YP_005353136.1 COG1961 Site-specific recombinases, DNA invertase Pin homologs YP_005353138.1 COG3621 Patatin YP_005353139.1 COG0125 Thymidylate kinase YP_005353140.1 COG0666 FOG: Ankyrin repeat YP_005353144.1 COG0457 FOG: TPR repeat. Possible operon. YP_005353145.1 COG0457 FOG: TPR repeat. Possible operon. YP_005353147.1 COG1396 Predicted transcriptional regulators YP_005353149.1 COG1192 ATPases involved in chromosome partitioning YP_005353150.1 COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain YP_005353152.1 COG1484 DNA replication protein YP_005353153.1 COG4584 Transposase and inactivated derivatives YP_005353154.1 COG4584 Transposase and inactivated derivatives YP_005353155.1 COG0593 ATPase involved in DNA replication initiation YP_005353157.1 COG1396 Predicted transcriptional regulators YP_005353162.1 COG5464 Uncharacterized conserved protein YP_005353164.1 COG0358 DNA primase (bacterial type) YP_005353173.1 COG0071 Molecular chaperone (small heat shock protein) YP_005353178.1 COG5464 Uncharacterized conserved protein YP_005353181.1 COG0358 DNA primase (bacterial type) YP_005353184.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases YP_005353187.1 COG0071 Molecular chaperone (small heat shock protein) YP_005353188.1 COG0071 Molecular chaperone (small heat shock protein) YP_005353189.1 COG1961 Site-specific recombinases, DNA invertase Pin homologs YP_005353190.1 COG0415 Deoxyribodipyrimidine photolyase YP_005353194.1 COG3328 Transposase and inactivated derivatives YP_005353195.1 COG3328 Transposase and inactivated derivatives YP_005353196.1 COG3328 Transposase and inactivated derivatives YP_005353197.1 COG3328 Transposase and inactivated derivatives YP_005353199.1 COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member YP_005353201.1 COG0593 ATPase involved in DNA replication initiation YP_005353204.1 COG1192 ATPases involved in chromosome partitioning YP_005364694.1 COG1146 Ferredoxin YP_005364695.1 COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component YP_005364696.1 COG0053 Predicted Co/Zn/Cd cation transporters YP_005364697.1 COG4520 Surface antigen YP_005364698.1 COG1881 Phospholipid-binding protein YP_005364699.1 COG1121 ABC-type Mn/Zn transport systems, ATPase component YP_005364701.1 COG0178 Excinuclease ATPase subunit YP_005364702.1 COG0629 Single-stranded DNA-binding protein YP_005364705.1 COG3772 Phage-related lysozyme (muraminidase) YP_005364706.1 COG1872 Uncharacterized conserved protein YP_005364707.1 COG0326 Molecular chaperone, HSP90 family YP_005364708.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes YP_005364709.1 COG2958 Uncharacterized protein conserved in bacteria YP_005364711.1 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) YP_005364712.1 COG0536 Predicted GTPase YP_005364713.1 COG0372 Citrate synthase YP_005364714.1 COG3636 Predicted transcriptional regulator YP_005364715.1 COG1573 Uracil-DNA glycosylase YP_005364716.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_005364722.1 COG0009 Putative translation factor (SUA5) YP_005364723.1 COG0751 Glycyl-tRNA synthetase, beta subunit YP_005364724.1 COG0752 Glycyl-tRNA synthetase, alpha subunit YP_005364725.1 COG1487 Predicted nucleic acid-binding protein, contains PIN domain YP_005364726.1 COG2161 Antitoxin of toxin-antitoxin stability system YP_005364727.1 COG1636 Uncharacterized protein conserved in bacteria YP_005364728.1 COG0477 Permeases of the major facilitator superfamily YP_005364730.1 COG1474 Cdc6-related protein, AAA superfamily ATPase YP_005364732.1 COG0013 Alanyl-tRNA synthetase YP_005364733.1 COG0101 Pseudouridylate synthase YP_005364734.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_005364735.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_005364736.1 COG0358 DNA primase (bacterial type) YP_005364737.1 COG0170 Dolichol kinase YP_005364738.1 COG0782 Transcription elongation factor YP_005364739.1 COG3288 NAD/NADP transhydrogenase alpha subunit YP_005364740.1 COG3288 NAD/NADP transhydrogenase alpha subunit YP_005364741.1 COG2834 Outer membrane lipoprotein-sorting protein YP_005364742.1 COG2812 DNA polymerase III, gamma/tau subunits YP_005364743.1 COG0718 Uncharacterized protein conserved in bacteria YP_005364745.1 COG1653 ABC-type sugar transport system, periplasmic component YP_005364747.1 COG3577 Predicted aspartyl protease YP_005364749.1 COG1680 Beta-lactamase class C and other penicillin binding proteins YP_005364750.1 COG2161 Antitoxin of toxin-antitoxin stability system YP_005364751.1 COG1126 ABC-type polar amino acid transport system, ATPase component YP_005364752.1 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I YP_005364753.1 COG0671 Membrane-associated phospholipid phosphatase YP_005364754.1 COG3077 DNA-damage-inducible protein J YP_005364755.1 COG0795 Predicted permeases YP_005364756.1 COG2927 DNA polymerase III, chi subunit YP_005364757.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases YP_005364759.1 COG1434 Uncharacterized conserved protein YP_005364760.1 COG0321 Lipoate-protein ligase B YP_005364761.1 COG3023 Negative regulator of beta-lactamase expression YP_005364762.1 COG0228 Ribosomal protein S16 YP_005364763.1 COG0267 Ribosomal protein L33 YP_005364764.1 COG0323 DNA mismatch repair enzyme (predicted ATPase) YP_005364765.1 COG4391 Uncharacterized protein conserved in bacteria YP_005364769.1 COG0457 FOG: TPR repeat YP_005364770.1 COG0477 Permeases of the major facilitator superfamily YP_005364771.1 COG0408 Coproporphyrinogen III oxidase YP_005364775.1 COG1981 Predicted membrane protein YP_005364776.1 COG0276 Protoheme ferro-lyase (ferrochelatase) YP_005364777.1 COG0407 Uroporphyrinogen-III decarboxylase YP_005364778.1 COG1806 Uncharacterized protein conserved in bacteria YP_005364779.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_005364780.1 COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component YP_005364781.1 COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component YP_005364782.1 COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases YP_005364783.1 COG2337 Growth inhibitor YP_005364785.1 COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase YP_005364786.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases YP_005364787.1 COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_005364798.1 COG1286 Uncharacterized membrane protein, required for colicin V production YP_005364799.1 COG1678 Putative transcriptional regulator YP_005364808.1 COG0262 Dihydrofolate reductase YP_005364811.1 COG1195 Recombinational DNA repair ATPase (RecF pathway) YP_005364813.1 COG0500 SAM-dependent methyltransferases YP_005364814.1 COG1329 Transcriptional regulators, similar to M. xanthus CarD YP_005364815.1 COG1651 Protein-disulfide isomerase YP_005364816.1 COG5336 Uncharacterized protein conserved in bacteria YP_005364817.1 COG0356 F0F1-type ATP synthase, subunit a YP_005364818.1 COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K YP_005364819.1 COG0711 F0F1-type ATP synthase, subunit b YP_005364820.1 COG0711 F0F1-type ATP synthase, subunit b YP_005364827.1 COG0617 tRNA nucleotidyltransferase/poly(A) polymerase YP_005364828.1 COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin YP_005364829.1 COG0802 Predicted ATPase or kinase YP_005364830.1 COG0042 tRNA-dihydrouridine synthase YP_005364838.1 COG0542 ATPases with chaperone activity, ATP-binding subunit YP_005364840.1 COG0533 Metal-dependent proteases with possible chaperone activity YP_005364841.1 COG1398 Fatty-acid desaturase YP_005364842.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005364843.1 COG0360 Ribosomal protein S6 YP_005364844.1 COG0238 Ribosomal protein S18 YP_005364845.1 COG0359 Ribosomal protein L9 YP_005364846.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_005364847.1 COG0465 ATP-dependent Zn proteases YP_005364848.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit YP_005364849.1 COG3755 Uncharacterized protein conserved in bacteria YP_005364850.1 COG1565 Uncharacterized conserved protein YP_005364851.1 COG0682 Prolipoprotein diacylglyceryltransferase YP_005364852.1 COG0668 Small-conductance mechanosensitive channel YP_005364853.1 COG0706 Preprotein translocase subunit YidC YP_005364854.1 COG0558 Phosphatidylglycerophosphate synthase YP_005364856.1 COG0500 SAM-dependent methyltransferases YP_005364858.1 COG3202 ATP/ADP translocase YP_005364859.1 COG2271 Sugar phosphate permease YP_005364860.1 COG0105 Nucleoside diphosphate kinase YP_005364861.1 COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division YP_005364862.1 COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division YP_005364863.1 COG1192 ATPases involved in chromosome partitioning YP_005364864.1 COG1475 Predicted transcriptional regulators YP_005364865.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_005364867.1 COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase YP_005364871.1 COG0316 Uncharacterized conserved protein YP_005364872.1 COG0232 dGTP triphosphohydrolase YP_005364873.1 COG0018 Arginyl-tRNA synthetase YP_005364875.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_005364877.1 COG3704 Type IV secretory pathway, VirB6 components YP_005364878.1 COG3704 Type IV secretory pathway, VirB6 components YP_005364879.1 COG3704 Type IV secretory pathway, VirB6 components YP_005364880.1 COG3704 Type IV secretory pathway, VirB6 components YP_005364881.1 COG3704 Type IV secretory pathway, VirB6 components YP_005364882.1 COG3451 Type IV secretory pathway, VirB4 components YP_005364883.1 COG3702 Type IV secretory pathway, VirB3 components YP_005364884.1 COG0548 Acetylglutamate kinase YP_005364885.1 COG0218 Predicted GTPase YP_005364886.1 COG0254 Ribosomal protein L31 YP_005364887.1 COG0227 Ribosomal protein L28 YP_005364890.1 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component YP_005364891.1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component YP_005364892.1 COG0787 Alanine racemase YP_005364893.1 COG0462 Phosphoribosylpyrophosphate synthetase YP_005364894.1 COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component YP_005364895.1 COG2853 Surface lipoprotein YP_005364896.1 COG0457 FOG: TPR repeat YP_005364897.1 COG2161 Antitoxin of toxin-antitoxin stability system YP_005364898.1 COG4115 Uncharacterized protein conserved in bacteria YP_005364899.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase YP_005364900.1 COG2121 Uncharacterized protein conserved in bacteria YP_005364901.1 COG1519 3-deoxy-D-manno-octulosonic-acid transferase YP_005364902.1 COG0264 Translation elongation factor Ts YP_005364903.1 COG0052 Ribosomal protein S2 YP_005364904.1 COG0215 Cysteinyl-tRNA synthetase YP_005364910.1 COG0477 Permeases of the major facilitator superfamily YP_005364911.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily YP_005364912.1 COG3047 Outer membrane protein W YP_005364913.1 COG1282 NAD/NADP transhydrogenase beta subunit YP_005364914.1 COG3820 Uncharacterized protein conserved in bacteria YP_005364915.1 COG2904 Uncharacterized protein conserved in bacteria YP_005364916.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005364917.1 COG1952 Preprotein translocase subunit SecB YP_005364918.1 COG0717 Deoxycytidine deaminase YP_005364920.1 COG0336 tRNA-(guanine-N1)-methyltransferase YP_005364921.1 COG0335 Ribosomal protein L19 YP_005364922.1 COG3750 Uncharacterized protein conserved in bacteria YP_005364923.1 COG0341 Preprotein translocase subunit SecF YP_005364924.1 COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit YP_005364925.1 COG0681 Signal peptidase I YP_005364926.1 COG0571 dsRNA-specific ribonuclease YP_005364927.1 COG1159 GTPase YP_005364928.1 COG0817 Holliday junction resolvasome, endonuclease subunit YP_005364929.1 COG0565 rRNA methylase YP_005364930.1 COG0554 Glycerol kinase YP_005364931.1 COG1708 Predicted nucleotidyltransferases YP_005364932.1 COG3660 Predicted nucleoside-diphosphate-sugar epimerase YP_005364933.1 COG0489 ATPases involved in chromosome partitioning YP_005364934.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_005364935.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_005364936.1 COG1054 Predicted sulfurtransferase YP_005364937.1 COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit YP_005364938.1 COG2142 Succinate dehydrogenase, hydrophobic anchor subunit YP_005364939.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YP_005364940.1 COG0765 ABC-type amino acid transport system, permease component YP_005364941.1 COG0048 Ribosomal protein S12 YP_005364942.1 COG0049 Ribosomal protein S7 YP_005364943.1 COG0480 Translation elongation factors (GTPases) YP_005364944.1 COG0690 Preprotein translocase subunit SecE YP_005364945.1 COG0250 Transcription antiterminator YP_005364946.1 COG0080 Ribosomal protein L11 YP_005364947.1 COG0081 Ribosomal protein L1 YP_005364948.1 COG0244 Ribosomal protein L10 YP_005364949.1 COG0222 Ribosomal protein L7/L12 YP_005364950.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit YP_005364951.1 COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit YP_005364953.1 COG0260 Leucyl aminopeptidase YP_005364954.1 COG1192 ATPases involved in chromosome partitioning YP_005364956.1 COG0173 Aspartyl-tRNA synthetase YP_005364958.1 COG0670 Integral membrane protein, interacts with FtsH YP_005364959.1 COG0289 Dihydrodipicolinate reductase YP_005364960.1 COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family YP_005364961.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_005364962.1 COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) YP_005364963.1 COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases YP_005364964.1 COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit YP_005364967.1 COG0233 Ribosome recycling factor YP_005364968.1 COG1863 Multisubunit Na+/H+ antiporter, MnhE subunit YP_005364969.1 COG0477 Permeases of the major facilitator superfamily YP_005364970.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_005364972.1 COG4775 Outer membrane protein/protective antigen OMA87 YP_005364973.1 COG0750 Predicted membrane-associated Zn-dependent proteases 1 YP_005364974.1 COG0781 Transcription termination factor YP_005364975.1 COG0293 23S rRNA methylase YP_005364978.1 COG2867 Oligoketide cyclase/lipid transport protein YP_005364979.1 COG5508 Uncharacterized conserved small protein YP_005364980.1 COG1385 Uncharacterized protein conserved in bacteria YP_005364981.1 COG2155 Uncharacterized conserved protein YP_005364982.1 COG0841 Cation/multidrug efflux pump YP_005364983.1 COG0776 Bacterial nucleoid DNA-binding protein YP_005364984.1 COG0470 ATPase involved in DNA replication YP_005364985.1 COG0541 Signal recognition particle GTPase YP_005364986.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases YP_005364990.1 COG1301 Na+/H+-dicarboxylate symporters YP_005364991.1 COG1324 Uncharacterized protein involved in tolerance to divalent cations YP_005364992.1 COG0720 6-pyruvoyl-tetrahydropterin synthase YP_005364993.1 COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes YP_005364994.1 COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes YP_005364995.1 COG2317 Zn-dependent carboxypeptidase YP_005364996.1 COG0497 ATPase involved in DNA repair YP_005364997.1 COG4105 DNA uptake lipoprotein YP_005364998.1 COG4572 Putative cation transport regulator YP_005364999.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain YP_005365000.1 COG0443 Molecular chaperone YP_005365001.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain YP_005365002.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_005365004.1 COG1466 DNA polymerase III, delta subunit YP_005365005.1 COG2941 Ubiquinone biosynthesis protein COQ7 YP_005365007.1 COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 YP_005365010.1 COG2171 Tetrahydrodipicolinate N-succinyltransferase YP_005365011.1 COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC YP_005365017.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins YP_005365018.1 COG2358 TRAP-type uncharacterized transport system, periplasmic component YP_005365020.1 COG0633 Ferredoxin YP_005365021.1 COG0443 Molecular chaperone YP_005365022.1 COG1076 DnaJ-domain-containing proteins 1 YP_005365023.1 COG0164 Ribonuclease HII YP_005365024.1 COG0556 Helicase subunit of the DNA excision repair complex YP_005365025.1 COG0695 Glutaredoxin and related proteins YP_005365026.1 COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components YP_005365027.1 COG0282 Acetate kinase YP_005365028.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_005365031.1 COG0242 N-formylmethionyl-tRNA deformylase YP_005365032.1 COG0223 Methionyl-tRNA formyltransferase YP_005365034.1 COG1485 Predicted ATPase YP_005365035.1 COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) YP_005365037.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005365039.1 COG1271 Cytochrome bd-type quinol oxidase, subunit 1 YP_005365040.1 COG1294 Cytochrome bd-type quinol oxidase, subunit 2 YP_005365041.1 COG2161 Antitoxin of toxin-antitoxin stability system YP_005365042.1 COG4115 Uncharacterized protein conserved in bacteria YP_005365043.1 COG0463 Glycosyltransferases involved in cell wall biogenesis YP_005365044.1 COG0612 Predicted Zn-dependent peptidases YP_005365045.1 COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase YP_005365047.1 COG0441 Threonyl-tRNA synthetase YP_005365048.1 COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain YP_005365053.1 COG1538 Outer membrane protein YP_005365054.1 COG3827 Uncharacterized protein conserved in bacteria YP_005365055.1 COG0666 FOG: Ankyrin repeat YP_005365056.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit YP_005365057.1 COG0793 Periplasmic protease YP_005365058.1 COG0642 Signal transduction histidine kinase YP_005365059.1 COG1729 Uncharacterized protein conserved in bacteria YP_005365061.1 COG1520 FOG: WD40-like repeat YP_005365062.1 COG0102 Ribosomal protein L13 YP_005365063.1 COG0103 Ribosomal protein S9 YP_005365064.1 COG2173 D-alanyl-D-alanine dipeptidase YP_005365068.1 COG2154 Pterin-4a-carbinolamine dehydratase YP_005365071.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_005365072.1 COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain YP_005365073.1 COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) YP_005365074.1 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family YP_005365076.1 COG0688 Phosphatidylserine decarboxylase YP_005365077.1 COG1183 Phosphatidylserine synthase YP_005365078.1 COG1566 Multidrug resistance efflux pump YP_005365082.1 COG0271 Stress-induced morphogen (activity unknown) YP_005365083.1 COG2200 FOG: EAL domain YP_005365084.1 COG0773 UDP-N-acetylmuramate-alanine ligase YP_005365085.1 COG0812 UDP-N-acetylmuramate dehydrogenase YP_005365086.1 COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes YP_005365087.1 COG1589 Cell division septal protein YP_005365088.1 COG0849 Actin-like ATPase involved in cell division YP_005365090.1 COG3474 Cytochrome c2 YP_005365092.1 COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase YP_005365094.1 COG1530 Ribonucleases G and E YP_005365095.1 COG1612 Uncharacterized protein required for cytochrome oxidase assembly YP_005365096.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_005365097.1 COG1680 Beta-lactamase class C and other penicillin binding proteins YP_005365098.1 COG0708 Exonuclease III YP_005365099.1 COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit YP_005365100.1 COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit YP_005365101.1 COG1217 Predicted membrane GTPase involved in stress response YP_005365102.1 COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase YP_005365103.1 COG2825 Outer membrane protein YP_005365104.1 COG0473 Isocitrate/isopropylmalate dehydrogenase YP_005365105.1 COG1320 Multisubunit Na+/H+ antiporter, MnhG subunit YP_005365106.1 COG1563 Predicted subunit of the Multisubunit Na+/H+ antiporter YP_005365109.1 COG0723 Rieske Fe-S protein YP_005365110.1 COG1290 Cytochrome b subunit of the bc complex YP_005365111.1 COG2827 Predicted endonuclease containing a URI domain YP_005365112.1 COG2857 Cytochrome c1 YP_005365114.1 COG0071 Molecular chaperone (small heat shock protein) YP_005365117.1 COG1186 Protein chain release factor B YP_005365118.1 COG0481 Membrane GTPase LepA YP_005365119.1 likely inactive due to overlap with tRNA YP_005365121.1 COG3093 Plasmid maintenance system antidote protein YP_005365122.1 COG0457 FOG: TPR repeat YP_005365130.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365131.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365132.1 COG0477 Permeases of the major facilitator superfamily YP_005365134.1 COG0772 Bacterial cell division membrane protein YP_005365135.1 COG1770 Protease II YP_005365136.1 COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit YP_005365138.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit YP_005365139.1 COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit YP_005365140.1 COG1006 Multisubunit Na+/H+ antiporter, MnhC subunit YP_005365141.1 COG3504 Type IV secretory pathway, VirB9 components YP_005365142.1 COG3736 Type IV secretory pathway, component VirB8 YP_005365144.1 COG3736 Type IV secretory pathway, component VirB8 YP_005365145.1 COG3504 Type IV secretory pathway, VirB9 components YP_005365146.1 COG2948 Type IV secretory pathway, VirB10 components YP_005365147.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis YP_005365148.1 COG3505 Type IV secretory pathway, VirD4 components YP_005365149.1 COG0248 Exopolyphosphatase YP_005365152.1 COG4695 Phage-related protein YP_005365156.1 COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase YP_005365157.1 COG0249 Mismatch repair ATPase (MutS family) YP_005365158.1 COG0698 Ribose 5-phosphate isomerase RpiB YP_005365159.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005365160.1 COG1451 Predicted metal-dependent hydrolase YP_005365161.1 COG1351 Predicted alternative thymidylate synthase YP_005365162.1 COG0823 Periplasmic component of the Tol biopolymer transport system YP_005365163.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_005365164.1 COG3175 Cytochrome oxidase assembly factor YP_005365166.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain YP_005365167.1 COG0531 Amino acid transporters YP_005365168.1 COG0124 Histidyl-tRNA synthetase YP_005365170.1 COG0584 Glycerophosphoryl diester phosphodiesterase YP_005365173.1 COG0811 Biopolymer transport proteins YP_005365174.1 COG0848 Biopolymer transport protein YP_005365177.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365178.1 COG0477 Permeases of the major facilitator superfamily YP_005365179.1 COG0845 Membrane-fusion protein YP_005365180.1 COG4618 ABC-type protease/lipase transport system, ATPase and permease components YP_005365181.1 COG0136 Aspartate-semialdehyde dehydrogenase YP_005365182.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases YP_005365184.1 COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit YP_005365185.1 COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit YP_005365187.1 COG0763 Lipid A disaccharide synthetase YP_005365188.1 COG0747 ABC-type dipeptide transport system, periplasmic component YP_005365189.1 COG1559 Predicted periplasmic solute-binding protein YP_005365190.1 COG1965 Protein implicated in iron transport, frataxin homolog YP_005365193.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_005365194.1 COG0550 Topoisomerase IA YP_005365196.1 COG0450 Peroxiredoxin YP_005365197.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_005365198.1 COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_005365199.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase YP_005365200.1 COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) YP_005365201.1 COG3093 Plasmid maintenance system antidote protein YP_005365202.1 COG1091 dTDP-4-dehydrorhamnose reductase YP_005365203.1 COG1086 Predicted nucleoside-diphosphate sugar epimerases YP_005365204.1 COG0381 UDP-N-acetylglucosamine 2-epimerase YP_005365207.1 COG0463 Glycosyltransferases involved in cell wall biogenesis YP_005365208.1 COG0845 Membrane-fusion protein YP_005365210.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) YP_005365211.1 COG0438 Glycosyltransferase YP_005365212.1 COG0488 ATPase component of ABC transporter with duplicated ATPase domains YP_005365214.1 COG0522 Ribosomal protein S4 and related proteins YP_005365215.1 COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) YP_005365216.1 COG1533 DNA repair photolyase YP_005365219.1 COG0457 FOG: TPR repeat YP_005365220.1 COG2982 Uncharacterized protein involved in outer membrane biogenesis YP_005365221.1 COG0806 RimM protein, required for 16S rRNA processing YP_005365223.1 COG1722 Exonuclease VII small subunit YP_005365224.1 COG5304 Uncharacterized protein conserved in bacteria YP_005365225.1 COG2094 3-methyladenine DNA glycosylase YP_005365226.1 COG2350 Uncharacterized protein conserved in bacteria YP_005365227.1 COG0759 Uncharacterized conserved protein YP_005365228.1 COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit YP_005365229.1 COG2827 Predicted endonuclease containing a URI domain YP_005365230.1 COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 YP_005365231.1 COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit YP_005365232.1 COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases YP_005365233.1 COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A) YP_005365234.1 COG3307 Lipid A core - O-antigen ligase and related enzymes YP_005365235.1 COG4765 Uncharacterized protein conserved in bacteria YP_005365236.1 COG4974 Site-specific recombinase XerD YP_005365239.1 COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) YP_005365240.1 COG0815 Apolipoprotein N-acyltransferase YP_005365241.1 COG3023 Negative regulator of beta-lactamase expression YP_005365242.1 COG2984 ABC-type uncharacterized transport system, periplasmic component YP_005365243.1 COG4120 ABC-type uncharacterized transport system, permease component YP_005365244.1 COG1101 ABC-type uncharacterized transport system, ATPase component YP_005365246.1 COG0666 FOG: Ankyrin repeat YP_005365248.1 COG0666 FOG: Ankyrin repeat YP_005365249.1 COG1495 Disulfide bond formation protein DsbB YP_005365250.1 COG1384 Lysyl-tRNA synthetase (class I) YP_005365251.1 COG0679 Predicted permeases YP_005365252.1 COG0281 Malic enzyme YP_005365255.1 COG4374 Uncharacterized protein conserved in bacteria YP_005365257.1 COG0477 Permeases of the major facilitator superfamily YP_005365261.1 COG0039 Malate/lactate dehydrogenases YP_005365263.1 COG3202 ATP/ADP translocase YP_005365264.1 COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase YP_005365265.1 COG1051 ADP-ribose pyrophosphatase YP_005365267.1 COG0302 GTP cyclohydrolase I YP_005365268.1 COG0442 Prolyl-tRNA synthetase YP_005365269.1 COG3177 Uncharacterized conserved protein YP_005365271.1 COG0632 Holliday junction resolvasome, DNA-binding subunit YP_005365275.1 COG2255 Holliday junction resolvasome, helicase subunit YP_005365276.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005365277.1 COG0477 Permeases of the major facilitator superfamily YP_005365278.1 COG1686 D-alanyl-D-alanine carboxypeptidase YP_005365279.1 COG0797 Lipoproteins YP_005365280.1 COG2823 Predicted periplasmic or secreted lipoprotein YP_005365281.1 COG2917 Intracellular septation protein A YP_005365282.1 COG0672 High-affinity Fe2+/Pb2+ permease YP_005365284.1 COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 YP_005365285.1 COG3485 Protocatechuate 3,4-dioxygenase beta subunit YP_005365286.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_005365287.1 COG0616 Periplasmic serine proteases (ClpP class) YP_005365288.1 COG0756 dUTPase YP_005365289.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_005365291.1 COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF YP_005365292.1 COG2887 RecB family exonuclease YP_005365294.1 COG2071 Predicted glutamine amidotransferases YP_005365295.1 COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 YP_005365296.1 COG0110 Acetyltransferase (isoleucine patch superfamily) YP_005365297.1 COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 YP_005365298.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005365299.1 COG0597 Lipoprotein signal peptidase YP_005365301.1 COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase YP_005365302.1 COG0772 Bacterial cell division membrane protein YP_005365303.1 COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase YP_005365307.1 COG0845 Membrane-fusion protein YP_005365308.1 COG1538 Outer membrane protein YP_005365309.1 COG0438 Glycosyltransferase YP_005365311.1 COG0253 Diaminopimelate epimerase YP_005365312.1 COG0621 2-methylthioadenine synthetase YP_005365313.1 COG0016 Phenylalanyl-tRNA synthetase alpha subunit YP_005365314.1 COG0073 EMAP domain YP_005365315.1 COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) YP_005365316.1 COG4728 Uncharacterized protein conserved in bacteria YP_005365318.1 COG0495 Leucyl-tRNA synthetase YP_005365320.1 COG0349 Ribonuclease D YP_005365321.1 COG2919 Septum formation initiator YP_005365322.1 COG0575 CDP-diglyceride synthetase YP_005365323.1 COG0020 Undecaprenyl pyrophosphate synthase YP_005365324.1 COG0642 Signal transduction histidine kinase YP_005365325.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_005365326.1 COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase YP_005365327.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase YP_005365328.1 COG0691 tmRNA-binding protein YP_005365329.1 COG1651 Protein-disulfide isomerase YP_005365330.1 COG0074 Succinyl-CoA synthetase, alpha subunit YP_005365331.1 COG0045 Succinyl-CoA synthetase, beta subunit YP_005365334.1 COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases YP_005365335.1 COG4395 Uncharacterized protein conserved in bacteria YP_005365336.1 COG1835 Predicted acyltransferases YP_005365337.1 COG0858 Ribosome-binding factor A YP_005365338.1 COG1238 Predicted membrane protein YP_005365339.1 COG1714 Predicted membrane protein/domain YP_005365340.1 COG0353 Recombinational DNA repair protein (RecF pathway) YP_005365343.1 COG0061 Predicted sugar kinase YP_005365344.1 COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily YP_005365345.1 COG0240 Glycerol-3-phosphate dehydrogenase YP_005365347.1 COG0679 Predicted permeases YP_005365348.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) YP_005365349.1 COG0492 Thioredoxin reductase YP_005365352.1 COG1012 NAD-dependent aldehyde dehydrogenases YP_005365354.1 COG0463 Glycosyltransferases involved in cell wall biogenesis YP_005365355.1 COG0210 Superfamily I DNA and RNA helicases YP_005365361.1 COG1171 Threonine dehydratase YP_005365362.1 COG0466 ATP-dependent Lon protease, bacterial type YP_005365366.1 COG1544 Ribosome-associated protein Y (PSrp-1) YP_005365367.1 COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily YP_005365368.1 COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily YP_005365369.1 COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase YP_005365370.1 COG0492 Thioredoxin reductase YP_005365372.1 COG3121 P pilus assembly protein, chaperone PapD YP_005365373.1 COG0209 Ribonucleotide reductase, alpha subunit YP_005365374.1 COG0208 Ribonucleotide reductase, beta subunit YP_005365375.1 COG1357 Uncharacterized low-complexity proteins YP_005365378.1 COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase YP_005365379.1 COG1109 Phosphomannomutase YP_005365380.1 COG1137 ABC-type (unclassified) transport system, ATPase component YP_005365381.1 COG1934 Uncharacterized protein conserved in bacteria YP_005365382.1 COG5375 Uncharacterized protein conserved in bacteria YP_005365383.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation YP_005365384.1 COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) YP_005365385.1 COG0184 Ribosomal protein S15P/S13E YP_005365386.1 COG0130 Pseudouridine synthase YP_005365387.1 COG3202 ATP/ADP translocase YP_005365389.1 COG1396 Predicted transcriptional regulators YP_005365390.1 COG1295 Predicted membrane protein YP_005365391.1 COG0174 Glutamine synthetase YP_005365392.1 COG1496 Uncharacterized conserved protein YP_005365393.1 COG0242 N-formylmethionyl-tRNA deformylase YP_005365394.1 COG4118 Antitoxin of toxin-antitoxin stability system YP_005365395.1 COG4113 Predicted nucleic acid-binding protein, contains PIN domain YP_005365397.1 COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase YP_005365398.1 COG0625 Glutathione S-transferase YP_005365399.1 COG1268 Uncharacterized conserved protein YP_005365400.1 COG0285 Folylpolyglutamate synthase YP_005365401.1 COG0605 Superoxide dismutase YP_005365402.1 COG1752 Predicted esterase of the alpha-beta hydrolase superfamily YP_005365403.1 COG0340 Biotin-(acetyl-CoA carboxylase) ligase YP_005365405.1 COG0191 Fructose/tagatose bisphosphate aldolase YP_005365413.1 COG1708 Predicted nucleotidyltransferases YP_005365416.1 COG5449 Uncharacterized conserved protein YP_005365418.1 COG5346 Predicted membrane protein YP_005365419.1 COG0290 Translation initiation factor 3 (IF-3) YP_005365420.1 COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes YP_005365421.1 COG0216 Protein chain release factor A YP_005365422.1 COG0608 Single-stranded DNA-specific exonuclease YP_005365423.1 COG0500 SAM-dependent methyltransferases YP_005365424.1 COG1158 Transcription termination factor YP_005365425.1 COG0616 Periplasmic serine proteases (ClpP class) YP_005365426.1 COG0776 Bacterial nucleoid DNA-binding protein YP_005365431.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes YP_005365432.1 COG0591 Na+/proline symporter YP_005365433.1 COG3328 Transposase and inactivated derivatives YP_005365434.1 COG3328 Transposase and inactivated derivatives YP_005365435.1 COG0457 FOG: TPR repeat YP_005365438.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365440.1 COG2771 DNA-binding HTH domain-containing proteins YP_005365441.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365442.1 COG0642 Signal transduction histidine kinase YP_005365444.1 COG0728 Uncharacterized membrane protein, putative virulence factor YP_005365445.1 COG0221 Inorganic pyrophosphatase YP_005365446.1 COG2332 Cytochrome c-type biogenesis protein CcmE YP_005365447.1 COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems YP_005365448.1 COG0342 Preprotein translocase subunit SecD YP_005365449.1 COG1862 Preprotein translocase subunit YajC YP_005365451.1 COG4710 Predicted DNA-binding protein with an HTH domain YP_005365453.1 COG0477 Permeases of the major facilitator superfamily YP_005365456.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365457.1 COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) YP_005365458.1 COG0647 Predicted sugar phosphatases of the HAD superfamily YP_005365459.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit YP_005365460.1 COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase YP_005365461.1 COG1758 DNA-directed RNA polymerase, subunit K/omega YP_005365462.1 COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) YP_005365463.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005365464.1 COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) YP_005365470.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_005365471.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_005365473.1 COG0350 Methylated DNA-protein cysteine methyltransferase YP_005365475.1 COG4912 Predicted DNA alkylation repair enzyme YP_005365476.1 COG2847 Uncharacterized protein conserved in bacteria YP_005365477.1 COG0322 Nuclease subunit of the excinuclease complex YP_005365479.1 COG0591 Na+/proline symporter YP_005365481.1 COG2001 Uncharacterized protein conserved in bacteria YP_005365482.1 COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis YP_005365484.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_005365486.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_005365488.1 COG1357 Uncharacterized low-complexity proteins YP_005365489.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains YP_005365490.1 COG2212 Multisubunit Na+/H+ antiporter, MnhF subunit YP_005365491.1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases YP_005365495.1 COG1040 Predicted amidophosphoribosyltransferases YP_005365496.1 COG1040 Predicted amidophosphoribosyltransferases YP_005365497.1 COG1250 3-hydroxyacyl-CoA dehydrogenase YP_005365498.1 COG2373 Large extracellular alpha-helical protein YP_005365502.1 COG3547 Transposase and inactivated derivatives YP_005365506.1 COG5304 Uncharacterized protein conserved in bacteria YP_005365508.1 COG0162 Tyrosyl-tRNA synthetase YP_005365509.1 COG1189 Predicted rRNA methylase YP_005365510.1 COG1959 Predicted transcriptional regulator YP_005365511.1 COG0779 Uncharacterized protein conserved in bacteria YP_005365512.1 COG0195 Transcription elongation factor YP_005365513.1 COG0532 Translation initiation factor 2 (IF-2; GTPase) YP_005365515.1 COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone YP_005365517.1 COG1381 Recombinational DNA repair protein (RecF pathway) YP_005365518.1 COG0191 Fructose/tagatose bisphosphate aldolase YP_005365519.1 COG1066 Predicted ATP-dependent serine protease YP_005365520.1 COG0742 N6-adenine-specific methylase YP_005365521.1 COG1357 Uncharacterized low-complexity proteins YP_005365522.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases YP_005365523.1 COG0814 Amino acid permeases YP_005365524.1 COG0814 Amino acid permease YP_005365526.1 COG0305 Replicative DNA helicase YP_005365528.1 COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_005365529.1 COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase YP_005365531.1 COG0113 Delta-aminolevulinic acid dehydratase YP_005365533.1 COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) YP_005365541.1 COG1959 Predicted transcriptional regulator YP_005365542.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_005365543.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_005365544.1 COG0822 NifU homolog involved in Fe-S cluster formation YP_005365545.1 COG0316 Uncharacterized conserved protein YP_005365550.1 COG0531 Amino acid transporters YP_005365551.1 COG0006 Xaa-Pro aminopeptidase YP_005365552.1 COG0142 Geranylgeranyl pyrophosphate synthase YP_005365554.1 COG3202 ATP/ADP translocase YP_005365557.1 COG0477 Permeases of the major facilitator superfamily YP_005365558.1 COG1279 Lysine efflux permease YP_005365561.1 COG2956 Predicted N-acetylglucosaminyl transferase YP_005365562.1 COG2945 Predicted hydrolase of the alpha/beta superfamily YP_005365563.1 COG3077 DNA-damage-inducible protein J YP_005365564.1 COG5622 Protein required for attachment to host cells YP_005365565.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_005365566.1 COG0180 Tryptophanyl-tRNA synthetase YP_005365568.1 COG1373 Predicted ATPase (AAA+ superfamily) YP_005365569.1 COG0181 Porphobilinogen deaminase YP_005365571.1 COG0642 Signal transduction histidine kinase YP_005365572.1 COG0642 Signal transduction histidine kinase YP_005365575.1 COG0354 Predicted aminomethyltransferase related to GcvT YP_005365576.1 COG1723 Uncharacterized conserved protein YP_005365577.1 COG0349 Ribonuclease D YP_005365578.1 COG0212 5-formyltetrahydrofolate cyclo-ligase YP_005365579.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes YP_005365580.1 COG0500 SAM-dependent methyltransferases YP_005365583.1 COG0338 Site-specific DNA methylase YP_005365584.1 COG0338 Site-specific DNA methylase YP_005365587.1 COG3677 Transposase and inactivated derivatives YP_005365589.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) YP_005365590.1 COG0536 Predicted GTPase YP_005365593.1 COG0217 Uncharacterized conserved protein YP_005365594.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) YP_005365602.1 COG1694 Predicted pyrophosphatase YP_005365603.1 COG0456 Acetyltransferases YP_005365604.1 COG0110 Acetyltransferase (isoleucine patch superfamily) YP_005365605.1 COG0110 Acetyltransferase (isoleucine patch superfamily) YP_005365606.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases YP_005365608.1 COG5628 Predicted acetyltransferase YP_005365609.1 COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases YP_005365611.1 COG3570 Streptomycin 6-kinase YP_005365613.1 COG1171 Threonine dehydratase YP_005365617.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_005365623.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005365624.1 COG0300 Short-chain dehydrogenases of various substrate specificities YP_005365625.1 COG3293 Transposase and inactivated derivatives YP_005365628.1 COG3547 Transposase and inactivated derivatives YP_005365631.1 COG3328 Transposase and inactivated derivatives YP_005365632.1 COG0740 Protease subunit of ATP-dependent Clp proteases YP_005365633.1 COG0539 Ribosomal protein S1 YP_005365634.1 COG0283 Cytidylate kinase YP_005365635.1 COG1396 Predicted transcriptional regulators YP_005365638.1 COG0338 Site-specific DNA methylase YP_005365639.1 COG0642 Signal transduction histidine kinase YP_005365640.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365641.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365642.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365644.1 COG0477 Permeases of the major facilitator superfamily YP_005365647.1 COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member YP_005365648.1 COG5464 Uncharacterized conserved protein YP_005365649.1 COG3505 Type IV secretory pathway, VirD4 components YP_005365650.1 COG0457 FOG: TPR repeat YP_005365655.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365656.1 COG3415 Transposase and inactivated derivatives YP_005365657.1 COG3335 Transposase and inactivated derivatives YP_005365659.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365660.1 COG0477 Permeases of the major facilitator superfamily YP_005365661.1 COG2890 Methylase of polypeptide chain release factors YP_005365664.1 COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) YP_005365665.1 COG0457 FOG: TPR repeat YP_005365667.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins YP_005365669.1 COG3505 Type IV secretory pathway, VirD4 components YP_005365670.1 COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member YP_005365671.1 COG0358 DNA primase (bacterial type) YP_005365672.1 COG0457 FOG: TPR repeat YP_005365673.1 COG1200 RecG-like helicase YP_005365674.1 COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit YP_005365675.1 COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit YP_005365677.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_005365678.1 COG0770 UDP-N-acetylmuramyl pentapeptide synthase YP_005365679.1 COG0769 UDP-N-acetylmuramyl tripeptide synthase YP_005365680.1 COG1197 Transcription-repair coupling factor (superfamily II helicase) YP_005365681.1 COG2938 Uncharacterized conserved protein YP_005365682.1 COG0607 Rhodanese-related sulfurtransferase YP_005365683.1 COG0593 ATPase involved in DNA replication initiation YP_005365687.1 COG3621 Patatin YP_005365688.1 COG0477 Permeases of the major facilitator superfamily YP_005365691.1 COG0012 Predicted GTPase, probable translation factor YP_005365693.1 COG0193 Peptidyl-tRNA hydrolase YP_005365694.1 COG1825 Ribosomal protein L25 (general stress protein Ctc) YP_005365696.1 COG0602 Organic radical activating enzymes YP_005365697.1 COG0291 Ribosomal protein L35 YP_005365698.1 COG0292 Ribosomal protein L20 YP_005365699.1 COG0230 Ribosomal protein L34 YP_005365701.1 COG0666 FOG: Ankyrin repeat YP_005365702.1 COG1471 Ribosomal protein S4E YP_005365705.1 COG3173 Predicted aminoglycoside phosphotransferase YP_005365706.1 COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation YP_005365707.1 COG0828 Ribosomal protein S21 YP_005365708.1 COG5590 Uncharacterized conserved protein YP_005365711.1 COG0060 Isoleucyl-tRNA synthetase YP_005365713.1 COG0666 FOG: Ankyrin repeat YP_005365714.1 COG0457 FOG: TPR repeat YP_005365716.1 COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit YP_005365717.1 COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) YP_005365719.1 COG0477 Permeases of the major facilitator superfamily YP_005365720.1 COG3070 Regulator of competence-specific genes YP_005365721.1 COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components YP_005365722.1 COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase YP_005365723.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_005365724.1 COG5342 Invasion protein B, involved in pathogenesis YP_005365726.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365727.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365728.1 COG0459 Chaperonin GroEL (HSP60 family) YP_005365729.1 COG0234 Co-chaperonin GroES (HSP10) YP_005365730.1 COG0689 RNase PH YP_005365731.1 COG0576 Molecular chaperone GrpE (heat shock protein) YP_005365732.1 COG0628 Predicted permease YP_005365733.1 COG0593 ATPase involved in DNA replication initiation YP_005365737.1 COG0268 Ribosomal protein S20 YP_005365738.1 COG0203 Ribosomal protein L17 YP_005365739.1 COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit YP_005365740.1 COG0100 Ribosomal protein S11 YP_005365741.1 COG0099 Ribosomal protein S13 YP_005365742.1 COG0563 Adenylate kinase and related kinases YP_005365743.1 COG0201 Preprotein translocase subunit SecY YP_005365744.1 COG0200 Ribosomal protein L15 YP_005365745.1 COG1841 Ribosomal protein L30/L7E YP_005365746.1 COG0098 Ribosomal protein S5 YP_005365747.1 COG0256 Ribosomal protein L18 YP_005365748.1 COG0097 Ribosomal protein L6P/L9E YP_005365749.1 COG0096 Ribosomal protein S8 YP_005365750.1 COG0199 Ribosomal protein S14 YP_005365751.1 COG0094 Ribosomal protein L5 YP_005365752.1 COG0198 Ribosomal protein L24 YP_005365753.1 COG0093 Ribosomal protein L14 YP_005365754.1 COG0186 Ribosomal protein S17 YP_005365755.1 COG0255 Ribosomal protein L29 YP_005365756.1 COG0197 Ribosomal protein L16/L10E YP_005365757.1 COG0092 Ribosomal protein S3 YP_005365758.1 COG0091 Ribosomal protein L22 YP_005365759.1 COG0185 Ribosomal protein S19 YP_005365760.1 COG0090 Ribosomal protein L2 YP_005365761.1 COG0089 Ribosomal protein L23 YP_005365762.1 COG0088 Ribosomal protein L4 YP_005365763.1 COG0087 Ribosomal protein L3 YP_005365764.1 COG0051 Ribosomal protein S10 YP_005365765.1 COG0050 GTPases - translation elongation factors YP_005365766.1 COG0566 rRNA methylases YP_005365768.1 COG0114 Fumarase YP_005365770.1 COG0206 Cell division GTPase YP_005365773.1 COG0694 Thioredoxin-like proteins and domains YP_005365774.1 COG0477 Permeases of the major facilitator superfamily YP_005365775.1 COG0513 Superfamily II DNA and RNA helicases YP_005365776.1 COG1278 Cold shock proteins YP_005365778.1 COG0030 Dimethyladenosine transferase (rRNA methylation) YP_005365779.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005365780.1 COG1452 Organic solvent tolerance protein OstA YP_005365781.1 COG1570 Exonuclease VII, large subunit YP_005365782.1 COG0708 Exonuclease III YP_005365783.1 COG4095 Uncharacterized conserved protein YP_005365784.1 COG1160 Predicted GTPases YP_005365786.1 COG0661 Predicted unusual protein kinase YP_005365787.1 COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis YP_005365788.1 COG0266 Formamidopyrimidine-DNA glycosylase YP_005365791.1 COG2958 Uncharacterized protein conserved in bacteria YP_005365792.1 COG0084 Mg-dependent DNase YP_005365793.1 COG0143 Methionyl-tRNA synthetase YP_005365794.1 COG0125 Thymidylate kinase YP_005365795.1 COG0477 Permeases of the major facilitator superfamily YP_005365796.1 COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases YP_005365798.1 COG0525 Valyl-tRNA synthetase YP_005365799.1 COG3475 LPS biosynthesis protein YP_005365800.1 COG3475 LPS biosynthesis protein YP_005365801.1 COG1373 Predicted ATPase (AAA+ superfamily) YP_005365802.1 COG1322 Uncharacterized protein conserved in bacteria YP_005365804.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_005365805.1 COG1090 Predicted nucleoside-diphosphate sugar epimerase YP_005365806.1 COG5528 Predicted integral membrane protein YP_005365807.1 COG1219 ATP-dependent protease Clp, ATPase subunit YP_005365808.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins YP_005365809.1 COG0603 Predicted PP-loop superfamily ATPase YP_005365810.1 COG1598 Uncharacterized conserved protein YP_005365812.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_005365814.1 COG0477 Permeases of the major facilitator superfamily YP_005365815.1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component YP_005365816.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_005365818.1 COG4536 Putative Mg2+ and Co2+ transporter CorB YP_005365819.1 COG1138 Cytochrome c biogenesis factor YP_005365823.1 COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain YP_005365824.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365825.1 COG1472 Beta-glucosidase-related glycosidases YP_005365826.1 COG0789 Predicted transcriptional regulators YP_005365827.1 COG0776 Bacterial nucleoid DNA-binding protein YP_005365830.1 COG1225 Peroxiredoxin YP_005365831.1 COG1560 Lauroyl/myristoyl acyltransferase YP_005365832.1 COG1663 Tetraacyldisaccharide-1-P 4'-kinase YP_005365833.1 COG0739 Membrane proteins related to metalloendopeptidases YP_005365834.1 COG2961 Protein involved in catabolism of external DNA YP_005365835.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) YP_005365837.1 COG0343 Queuine/archaeosine tRNA-ribosyltransferase YP_005365838.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365841.1 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component YP_005365842.1 COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit YP_005365843.1 COG0328 Ribonuclease HI YP_005365844.1 COG3814 Uncharacterized protein conserved in bacteria YP_005365845.1 COG3494 Uncharacterized protein conserved in bacteria YP_005365846.1 COG0237 Dephospho-CoA kinase YP_005365847.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases YP_005365848.1 COG3346 Uncharacterized conserved protein YP_005365849.1 COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) YP_005365851.1 COG0331 (acyl-carrier-protein) S-malonyltransferase YP_005365860.1 COG0666 FOG: Ankyrin repeat YP_005365863.1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits YP_005365865.1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits YP_005365868.1 COG0183 Acetyl-CoA acetyltransferase YP_005365869.1 COG3202 ATP/ADP translocase YP_005365870.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_005365872.1 COG1253 Hemolysins and related proteins containing CBS domains YP_005365873.1 COG0319 Predicted metal-dependent hydrolase YP_005365876.1 COG0320 Lipoate synthase YP_005365877.1 COG0112 Glycine/serine hydroxymethyltransferase YP_005365878.1 COG0400 Predicted esterase YP_005365879.1 COG0278 Glutaredoxin-related protein YP_005365880.1 COG0177 Predicted EndoIII-related endonuclease YP_005365882.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_005365886.1 COG0313 Predicted methyltransferases YP_005365887.1 COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component YP_005365888.1 COG1826 Sec-independent protein secretion pathway components YP_005365889.1 COG1267 Phosphatidylglycerophosphatase A and related proteins YP_005365890.1 COG0261 Ribosomal protein L21 YP_005365891.1 COG0211 Ribosomal protein L27 YP_005365892.1 COG0527 Aspartokinases YP_005365893.1 COG1396 Predicted transcriptional regulators YP_005365895.1 COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold YP_005365896.1 COG0477 Permeases of the major facilitator superfamily YP_005365898.1 COG0419 ATPase involved in DNA repair YP_005365899.1 COG1426 Uncharacterized protein conserved in bacteria YP_005365900.1 COG2902 NAD-specific glutamate dehydrogenase YP_005365901.1 COG0486 Predicted GTPase YP_005365904.1 COG0477 Permeases of the major facilitator superfamily YP_005365905.1 COG0477 Permeases of the major facilitator superfamily YP_005365906.1 COG0477 Permeases of the major facilitator superfamily YP_005365907.1 COG0468 RecA/RadA recombinase YP_005365908.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_005365909.1 COG0236 Acyl carrier protein YP_005365910.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase YP_005365911.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_005365914.1 COG1373 Predicted ATPase (AAA+ superfamily) YP_005365915.1 COG0194 Guanylate kinase YP_005365916.1 COG1396 Predicted transcriptional regulators YP_005365917.1 COG1792 Cell shape-determining protein YP_005365918.1 COG1077 Actin-like ATPase involved in cell morphogenesis YP_005365919.1 COG0795 Predicted permeases YP_005365920.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins YP_005365921.1 COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III YP_005365922.1 COG0333 Ribosomal protein L32 YP_005365923.1 COG2913 Small protein A (tmRNA-binding) YP_005365924.1 COG0552 Signal recognition particle GTPase YP_005365925.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI) YP_005365926.1 COG0192 S-adenosylmethionine synthetase YP_005365934.1 COG0587 DNA polymerase III, alpha subunit YP_005365935.1 COG1004 Predicted UDP-glucose 6-dehydrogenase YP_005365937.1 COG0477 Permeases of the major facilitator superfamily YP_005365938.1 COG0805 Sec-independent protein secretion pathway component TatC YP_005365939.1 COG0172 Seryl-tRNA synthetase YP_005365941.1 COG3451 Type IV secretory pathway, VirB4 components YP_005365943.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance YP_005365944.1 COG3637 Opacity protein and related surface antigens YP_005365945.1 COG0500 SAM-dependent methyltransferases YP_005365946.1 COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) YP_005365947.1 COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) YP_005365948.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit YP_005365949.1 COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) YP_005365951.1 COG4133 ABC-type transport system involved in cytochrome c biogenesis, ATPase component YP_005365952.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) YP_005365953.1 COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) YP_005365954.1 COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) YP_005365955.1 COG3671 Predicted membrane protein YP_005365956.1 COG1048 Aconitase A YP_005365957.1 COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) YP_005365958.1 COG0055 F0F1-type ATP synthase, beta subunit YP_005365959.1 COG0224 F0F1-type ATP synthase, gamma subunit YP_005365960.1 COG0056 F0F1-type ATP synthase, alpha subunit YP_005365961.1 COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) YP_005365962.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes YP_005365963.1 COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) YP_005365964.1 COG2602 Beta-lactamase class D YP_005365965.1 COG2602 Beta-lactamase class D YP_005365966.1 COG5009 Membrane carboxypeptidase/penicillin-binding protein YP_005365967.1 COG0621 2-methylthioadenine synthetase YP_005365969.1 COG3807 Uncharacterized protein conserved in bacteria YP_005365970.1 COG0475 Kef-type K+ transport systems, membrane components YP_005365971.1 COG0799 Uncharacterized homolog of plant Iojap protein YP_005365972.1 COG0271 Stress-induced morphogen (activity unknown) YP_005365977.1 COG0361 Translation initiation factor 1 (IF-1) YP_005365978.1 COG0424 Nucleotide-binding protein implicated in inhibition of septum formation YP_005365979.1 COG1734 DnaK suppressor protein YP_005365980.1 COG0582 Integrase YP_005365982.1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases YP_005365983.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_005365984.1 COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain YP_005365985.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins YP_005365986.1 COG0024 Methionine aminopeptidase YP_005365987.1 COG2003 DNA repair proteins YP_005365988.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_005365990.1 COG3637 Opacity protein and related surface antigens YP_005365991.1 COG3637 Opacity protein and related surface antigens YP_005365992.1 COG1961 Site-specific recombinases, DNA invertase Pin homologs YP_005365993.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases YP_005365994.1 COG0457 FOG: TPR repeat YP_005365995.1 COG0457 FOG: TPR repeat YP_005365998.1 COG1192 ATPases involved in chromosome partitioning YP_005365999.1 COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain YP_005366000.1 COG0593 ATPase involved in DNA replication initiation YP_005366002.1 COG2801 Transposase and inactivated derivatives YP_005366003.1 COG2801 Transposase and inactivated derivatives YP_005366008.1 COG5464 Uncharacterized conserved protein YP_005366011.1 COG4804 Uncharacterized conserved protein YP_005366013.1 COG2801 Transposase and inactivated derivatives