-- dump date 20140619_025708 -- class Genbank::CDS -- table cds_note -- id note YP_358873.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_358874.1 identified by similarity to SP:P25814; match to protein family HMM PF00825; match to protein family HMM TIGR00188 YP_358875.1 identified by similarity to SP:Q8RHA5; match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_358876.1 identified by similarity to SP:Q01625; match to protein family HMM PF02096 YP_358877.1 identified by similarity to SP:Q01620; match to protein family HMM PF01424 YP_358878.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650 YP_358879.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_358880.1 identified by similarity to SP:P25813; match to protein family HMM PF02527; match to protein family HMM TIGR00138 YP_358881.1 identified by similarity to SP:P37522; match to protein family HMM PF01656 YP_358882.1 identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_358883.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212; match to protein family HMM TIGR01977 YP_358884.1 identified by match to protein family HMM PF03601 YP_358885.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_358886.1 identified by similarity to SP:Q9X059; match to protein family HMM PF01969; match to protein family HMM TIGR00299 YP_358887.1 identified by similarity to GB:AAM24029.1 YP_358888.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR00268 YP_358889.1 identified by similarity to GB:BAB82356.1 YP_358890.1 identified by match to protein family HMM PF00156 YP_358891.1 identified by similarity to SP:Q9K9I0; match to protein family HMM PF03698 YP_358892.1 identified by similarity to PIR:F84156; match to protein family HMM PF06866 YP_358895.1 catalyzes the removal of amino acids from the N termini of peptides YP_358896.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_358897.1 identified by similarity to GB:BAC70657.1 YP_358898.1 identified by match to protein family HMM PF01068; match to protein family HMM PF01331 YP_358899.1 identified by similarity to GB:BAC14989.1; match to protein family HMM PF02735 YP_358901.1 identified by similarity to SP:P31064; match to protein family HMM PF04143 YP_358902.1 identified by similarity to GB:AAP77896.1; match to protein family HMM PF01206 YP_358903.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_358904.1 identified by similarity to GB:AAM25886.1; match to protein family HMM PF06107 YP_358905.1 identified by match to protein family HMM PF00924 YP_358906.1 identified by similarity to GP:15826756; match to protein family HMM PF03063; match to protein family HMM TIGR01702 YP_358907.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_358908.1 identified by similarity to SP:P37455; match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621 YP_358909.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_358911.1 identified by similarity to SP:P37437; match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158 YP_358912.1 identified by similarity to SP:P42425; match to protein family HMM PF00004; match to protein family HMM PF05362 YP_358913.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 YP_358914.1 identified by similarity to GB:AAM25355.1 YP_358915.1 identified by match to protein family HMM PF01855 YP_358916.1 identified by match to protein family HMM PF02775 YP_358917.1 identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175 YP_358918.1 identified by match to protein family HMM PF00037 YP_358919.1 identified by similarity to SP:P41363; match to protein family HMM PF00082 YP_358920.1 identified by similarity to SP:P37534 YP_358921.1 identified by similarity to SP:P21885; match to protein family HMM PF01276 YP_358922.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041 YP_358923.1 identified by similarity to SP:P37540 YP_358924.1 identified by similarity to SP:P37541; similarity to SP:P45685; match to protein family HMM PF04468 YP_358925.1 identified by similarity to GB:AAP24086.1; match to protein family HMM PF06156 YP_358926.1 identified by similarity to SP:P37543; match to protein family HMM PF05175 YP_358927.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_358928.1 identified by similarity to SP:P27291; match to protein family HMM PF04972 YP_358929.1 identified by similarity to SP:O34358; match to protein family HMM PF00089; match to protein family HMM PF00595 YP_358930.1 identified by match to protein family HMM PF02590; match to protein family HMM TIGR00246 YP_358931.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_358932.1 identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785 YP_358933.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid YP_358934.1 Catalyzes the reversible hydration of fumaric acid to yield l-malic acid YP_358935.1 identified by match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01812 YP_358936.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384 YP_358937.1 identified by similarity to OMNI:CT2040; match to protein family HMM PF02754 YP_358938.1 identified by similarity to OMNI:NTL02MA1275 YP_358939.1 catalyzes the formation of pyruvate from serine YP_358940.1 identified by match to protein family HMM PF00209 YP_358941.1 identified by match to protein family HMM PF01909 YP_358942.1 identified by similarity to GB:AAM05257.1; match to protein family HMM PF01934 YP_358944.1 identified by match to protein family HMM PF00543 YP_358945.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_358946.1 identified by similarity to GB:AAP10909.1; match to protein family HMM PF00563 YP_358947.1 identified by similarity to SP:Q45068; match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_358948.1 identified by match to protein family HMM PF00294 YP_358949.1 identified by similarity to GB:CAB87988.1; match to protein family HMM PF04227 YP_358950.1 identified by similarity to OMNI:NTL01BH3639; match to protein family HMM PF06445 YP_358951.1 identified by match to protein family HMM PF04909 YP_358952.1 identified by match to protein family HMM PF01909 YP_358954.1 identified by match to protein family HMM PF00582 YP_358955.1 identified by similarity to GP:1498752 YP_358957.1 identified by similarity to GP:15826756; match to protein family HMM PF03063; match to protein family HMM TIGR01702 YP_358958.1 identified by similarity to OMNI:AF0950; match to protein family HMM PF00037 YP_358960.1 identified by match to protein family HMM TIGR01730 YP_358961.1 identified by match to protein family HMM PF00005 YP_358962.1 identified by match to protein family HMM PF02687 YP_358963.1 identified by similarity to GB:AAP11573.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_358964.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_358965.1 identified by similarity to GB:BAC12840.1 YP_358966.1 identified by match to protein family HMM PF01145 YP_358967.1 identified by match to protein family HMM PF00037 YP_358969.1 identified by match to protein family HMM PF04055 YP_358970.1 identified by match to protein family HMM PF07690 YP_358971.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02926 YP_358972.1 identified by similarity to GB:AAL94332.1; match to protein family HMM PF01637; match to protein family HMM PF03008 YP_358973.1 identified by match to protein family HMM PF00892 YP_358974.1 identified by similarity to SP:P23887; match to protein family HMM PF00210 YP_358975.1 identified by match to protein family HMM PF01966 YP_358976.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_358977.1 identified by similarity to GB:AAM24032.1 YP_358980.1 identified by match to protein family HMM PF01435 YP_358981.1 identified by similarity to OMNI:CC0123 YP_358982.1 identified by match to protein family HMM PF00037 YP_358984.1 identified by similarity to GB:AAM24362.1; match to protein family HMM PF01926; match to protein family HMM TIGR00231 YP_358985.1 identified by similarity to SP:P42334; match to protein family HMM PF01569 YP_358986.1 identified by match to protein family HMM PF01037 YP_358987.1 identified by match to protein family HMM PF00155 YP_358988.1 identified by match to protein family HMM PF01047 YP_358989.1 identified by match to protein family HMM PF00005 YP_358990.1 identified by similarity to GB:AAO75986.1; match to protein family HMM PF03649; match to protein family HMM TIGR00245 YP_358991.1 identified by similarity to SP:O06493; match to protein family HMM PF00474; match to protein family HMM TIGR00813 YP_358992.1 identified by similarity to SP:P76085 YP_358993.1 identified by similarity to SP:O07835; match to protein family HMM PF00037; match to protein family HMM PF02775 YP_358994.1 identified by similarity to SP:O07836; match to protein family HMM PF01558 YP_358995.1 identified by similarity to GB:AAM25663.1 YP_358996.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_358997.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_358998.1 identified by match to protein family HMM PF00072 YP_359000.1 class II aldolase; catalyzes the formation of fructose 1,6-bisphosphate from dihydroxyacetone phosphate and glyceraldehyde 3-phosphate YP_359001.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_359002.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_359003.1 identified by similarity to GB:AAC98486.1; match to protein family HMM PF04055 YP_359004.1 identified by similarity to GB:CAD14040.1; match to protein family HMM PF06063 YP_359005.1 identified by similarity to GB:AAP08650.1; match to protein family HMM PF03591 YP_359006.1 identified by similarity to SP:P21822; match to protein family HMM PF00015 YP_359007.1 identified by similarity to GB:AAM23355.1; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_359009.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_359010.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_359012.1 identified by similarity to PIR:S76977; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_359013.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_359015.1 identified by match to protein family HMM PF04542 YP_359016.1 identified by similarity to GB:AAP29137.1 YP_359017.1 identified by similarity to GB:BAC14096.1 YP_359018.1 identified by similarity to GB:AAK76911.1 YP_359019.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02589 YP_359020.1 identified by similarity to SP:P96797; match to protein family HMM PF02754 YP_359023.1 identified by similarity to PIR:C97179; match to protein family HMM PF06738 YP_359024.1 identified by similarity to PIR:B83660 YP_359025.1 identified by similarity to SP:P31773 YP_359027.1 identified by similarity to SP:Q45098; match to protein family HMM PF00313 YP_359028.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_359029.1 identified by similarity to SP:Q45098; match to protein family HMM PF00313 YP_359031.1 identified by similarity to GB:AAM23793.1 YP_359032.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_359033.1 identified by similarity to GB:AAM23795.1 YP_359034.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_359035.1 identified by similarity to SP:P28367; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020 YP_359036.1 identified by similarity to GB:AAM25320.1; match to protein family HMM PF02588 YP_359037.1 identified by match to protein family HMM PF00456 YP_359038.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_359039.1 identified by similarity to SP:P10115; match to protein family HMM PF00005; match to protein family HMM TIGR02673 YP_359040.1 identified by similarity to SP:O34876; match to protein family HMM PF02687 YP_359041.1 identified by similarity to GB:BAB81320.1; match to protein family HMM PF01551 YP_359042.1 identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_359043.1 identified by match to protein family HMM PF00595 YP_359044.1 identified by similarity to SP:P39065; match to protein family HMM PF00583 YP_359045.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01842 YP_359046.1 identified by similarity to SP:P39067; match to protein family HMM PF00850 YP_359049.1 identified by similarity to GB:AAM23971.1; match to protein family HMM PF01139 YP_359050.1 identified by similarity to OMNI:NTL01MK0731 YP_359051.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_359052.1 identified by match to protein family HMM PF00037 YP_359053.1 identified by match to protein family HMM PF00037 YP_359057.1 identified by similarity to OMNI:NTL01BS1364 YP_359058.1 identified by similarity to GB:AAL80726.1; match to protein family HMM PF01613 YP_359059.1 identified by similarity to PIR:A69865; match to protein family HMM PF03734 YP_359060.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154 YP_359061.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_359062.1 identified by similarity to GB:AAM25681.1 YP_359063.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_359064.1 identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173 YP_359065.1 identified by similarity to SP:P14193; match to protein family HMM PF00156; match to protein family HMM TIGR01251 YP_359066.1 identified by similarity to PIR:B75462 YP_359067.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_359068.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_359069.1 identified by similarity to GB:AAM25690.1 YP_359072.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_359073.1 identified by similarity to SP:P77241; match to protein family HMM PF00639 YP_359074.1 identified by similarity to SP:P37554; match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_359075.1 This gene assignment is based partly on a multiple alignment of the best blast matches.; identified by match to protein family HMM PF07605 YP_359076.1 identified by similarity to GB:AAP24110.1; match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444 YP_359077.1 identified by similarity to SP:P02346; match to protein family HMM PF00216 YP_359078.1 identified by similarity to SP:P07372; match to protein family HMM TIGR02669 YP_359079.1 identified by similarity to OMNI:NTL01OI0068 YP_359081.1 identified by similarity to PIR:T35281 YP_359082.1 identified by similarity to GB:AAM25577.1; match to protein family HMM PF04977 YP_359083.1 identified by match to protein family HMM PF02541 YP_359084.1 identified by similarity to SP:P37475; match to protein family HMM PF07228 YP_359085.1 identified by similarity to PIR:T31465; match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_359086.1 identified by similarity to SP:P37476; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_359087.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_359088.1 identified by similarity to SP:P39209; match to protein family HMM PF00015 YP_359089.1 identified by match to protein family HMM PF00015 YP_359090.1 identified by match to protein family HMM TIGR01905 YP_359091.1 identified by match to protein family HMM PF04932 YP_359093.1 identified by similarity to GB:AAL93886.1; match to protein family HMM PF00515; match to protein family HMM PF07719 YP_359094.1 identified by match to protein family HMM PF01436 YP_359098.1 identified by similarity to GB:BAC56939.1 YP_359099.1 identified by match to protein family HMM PF00037 YP_359101.1 identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_359102.1 identified by similarity to GB:AAM25641.1; match to protein family HMM TIGR02357 YP_359103.1 identified by similarity to GB:AAO35797.1; match to protein family HMM PF04263; match to protein family HMM TIGR01378 YP_359105.1 identified by similarity to GP:3628767 YP_359107.1 identified by similarity to GB:AAM25057.1 YP_359108.1 identified by similarity to OMNI:SO0727; match to protein family HMM PF02001; match to protein family HMM PF02579 YP_359109.1 identified by similarity to SP:Q47675; match to protein family HMM PF01255 YP_359110.1 identified by similarity to GB:AAM25588.1; match to protein family HMM PF05977; match to protein family HMM PF07690 YP_359111.1 catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate YP_359112.1 identified by match to protein family HMM PF00702 YP_359114.1 identified by similarity to SP:Q9S1E6 YP_359115.1 identified by similarity to SP:Q9S1E5; match to protein family HMM PF02335 YP_359116.1 identified by match to protein family HMM PF00037 YP_359119.1 identified by similarity to OMNI:NTL01TT0007; match to protein family HMM PF07685 YP_359121.1 identified by similarity to SP:P27095; match to protein family HMM PF00501 YP_359125.1 identified by match to protein family HMM PF01042 YP_359127.1 identified by similarity to SP:P21861; match to protein family HMM PF00583 YP_359129.1 identified by match to protein family HMM PF02146 YP_359130.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_359131.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_359134.1 identified by match to protein family HMM PF01968; match to protein family HMM PF05378 YP_359135.1 identified by match to protein family HMM PF00850 YP_359136.1 identified by similarity to GB:AAD44021.1; match to protein family HMM PF02629 YP_359137.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR02609 YP_359138.1 identified by similarity to PIR:G95102 YP_359139.1 identified by match to protein family HMM PF00633; match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM TIGR00194 YP_359140.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_359141.1 identified by match to protein family HMM PF01070 YP_359142.1 identified by similarity to SP:P54495; match to protein family HMM PF00480; match to protein family HMM TIGR00744 YP_359143.1 identified by match to protein family HMM PF02811 YP_359144.1 identified by similarity to GB:AAO36958.1; match to protein family HMM PF03668 YP_359145.1 identified by similarity to SP:Q97LP2; match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_359146.1 identified by match to protein family HMM PF01522 YP_359147.1 identified by similarity to OMNI:NTL01OI2466; match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_359149.1 identified by similarity to SP:P07464; match to protein family HMM PF00132 YP_359150.1 identified by match to protein family HMM PF07187 YP_359151.1 identified by similarity to SP:P24255; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; match to protein family HMM TIGR02395 YP_359152.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_359153.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_359154.1 identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419 YP_359155.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_359156.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_359157.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_359158.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_359159.1 identified by similarity to PIR:T34819; match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_359160.1 identified by similarity to GB:AAM24237.1; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_359161.1 identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_359162.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_359164.1 identified by similarity to GB:AAM73469.1 YP_359165.1 identified by similarity to GB:AAM73468.1; match to protein family HMM PF06114 YP_359166.1 identified by match to protein family HMM PF04471 YP_359168.1 identified by similarity to GB:AAL98327.1 YP_359171.1 identified by similarity to SP:P06968; match to protein family HMM PF00692; match to protein family HMM TIGR00576 YP_359172.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_359173.1 identified by similarity to GB:AAM25514.1 YP_359174.1 identified by similarity to GB:AAO35263.1; match to protein family HMM PF01471; match to protein family HMM PF03734 YP_359175.1 identified by similarity to SP:P39072 YP_359176.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067 YP_359177.1 converts methylaspartate to L-glutamate YP_359178.1 identified by match to protein family HMM TIGR01319 YP_359179.1 identified by match to protein family HMM PF06368; match to protein family HMM TIGR01503 YP_359180.1 identified by similarity to PIR:F97344; match to protein family HMM PF06050 YP_359181.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_359182.1 identified by similarity to GB:AAM24196.1; match to protein family HMM PF00753 YP_359184.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_359185.1 identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042 YP_359186.1 identified by similarity to GB:AAM23890.1; match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_359187.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_359188.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_359189.1 binds and unfolds substrates as part of the ClpXP protease YP_359192.1 identified by similarity to SP:P42425; match to protein family HMM PF00004; match to protein family HMM PF05362 YP_359193.1 identified by similarity to SP:P36772; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 YP_359197.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_359198.1 identified by similarity to SP:Q05865; match to protein family HMM PF02875; match to protein family HMM TIGR01499 YP_359199.1 identified by similarity to SP:P49939; match to protein family HMM PF03323 YP_359200.1 identified by similarity to SP:P49941; match to protein family HMM PF05504 YP_359201.1 identified by similarity to OMNI:NTL01CAA0017 YP_359202.1 modulates transcription in response to the NADH/NAD(+) redox state YP_359203.1 identified by similarity to SP:Q02169; match to protein family HMM PF02545; match to protein family HMM TIGR00172 YP_359204.1 identified by similarity to SP:P25531; match to protein family HMM PF04002; match to protein family HMM TIGR00608 YP_359205.1 functions in MreBCD complex in some organisms YP_359206.1 identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219 YP_359207.1 identified by similarity to GB:CAA74599.1 YP_359208.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_359210.1 identified by similarity to SP:Q01463; match to protein family HMM PF03775 YP_359211.1 identified by similarity to SP:Q01464; match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_359212.1 identified by match to protein family HMM PF03776; match to protein family HMM TIGR01215 YP_359214.1 identified by similarity to SP:P77304 YP_359217.1 identified by similarity to GB:AAD05531.1 YP_359218.1 identified by similarity to PIR:A70390 YP_359221.1 identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_359222.1 identified by similarity to GB:AAP26001.1; match to protein family HMM PF00753 YP_359223.1 identified by match to protein family HMM PF01551 YP_359224.1 identified by similarity to SP:P26937; match to protein family HMM PF02163 YP_359225.1 identified by similarity to GB:AAM24165.1; match to protein family HMM PF04055 YP_359226.1 identified by similarity to GB:AAM24166.1 YP_359227.1 identified by similarity to SP:P21513; similarity to SP:P25537; match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_359228.1 identified by similarity to PIR:B69451 YP_359230.1 identified by similarity to SP:P26908; match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_359231.1 involved in the peptidyltransferase reaction during translation YP_359232.1 identified by similarity to GB:AAM24172.1 YP_359233.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_359234.1 identified by similarity to GB:BAB52938.1 YP_359235.1 identified by match to protein family HMM PF00989 YP_359236.1 identified by match to protein family HMM PF07690 YP_359237.1 identified by match to protein family HMM PF01226 YP_359238.1 identified by similarity to GB:CAC40782.1; match to protein family HMM PF01547 YP_359239.1 identified by similarity to GB:AAB84984.1; match to protein family HMM PF00528 YP_359240.1 identified by similarity to SP:P14788; match to protein family HMM PF00005 YP_359241.1 identified by match to protein family HMM PF00126; match to protein family HMM TIGR01199 YP_359242.1 identified by match to protein family HMM PF04073 YP_359243.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_359244.1 identified by match to protein family HMM TIGR01766 YP_359245.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_359246.1 identified by similarity to GB:BAB81029.1; match to protein family HMM PF00571; match to protein family HMM PF03448 YP_359247.1 identified by similarity to SP:P77145; match to protein family HMM PF01566 YP_359248.1 identified by similarity to GB:AAO91321.1; match to protein family HMM PF02636 YP_359249.1 identified by similarity to GB:AAH21757.1 YP_359250.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482 YP_359251.1 identified by similarity to SP:Q04836; match to protein family HMM PF00076 YP_359252.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488 YP_359253.1 identified by similarity to GB:AAM71388.1; match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_359254.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_359255.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_359258.1 identified by match to protein family HMM PF01497 YP_359259.1 identified by match to protein family HMM PF01032 YP_359260.1 identified by similarity to SP:P23878; match to protein family HMM PF00005 YP_359261.1 identified by similarity to SP:Q58002 YP_359262.1 identified by similarity to GB:AAO35192.1; match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_359263.1 identified by similarity to SP:P39694; match to protein family HMM PF00633; match to protein family HMM TIGR00426 YP_359264.1 identified by similarity to SP:P39695; match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_359265.1 identified by match to protein family HMM PF01464 YP_359266.1 identified by similarity to GB:AAO82164.1; match to protein family HMM PF06144; match to protein family HMM TIGR01128 YP_359267.2 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_359268.1 identified by similarity to GB:AAM24201.1 YP_359269.1 identified by similarity to SP:P37968 YP_359270.1 identified by similarity to GB:AAM23477.1; match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_359271.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_359272.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539 YP_359273.1 identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331 YP_359274.1 identified by similarity to SP:P48424; match to protein family HMM PF00118 YP_359275.1 identified by similarity to SP:P15874; match to protein family HMM PF01025 YP_359276.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_359277.1 identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349 YP_359278.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02475; match to protein family HMM PF03602; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM TIGR00406 YP_359279.1 identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046 YP_359280.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_359281.1 identified by similarity to GB:AAM24219.1; match to protein family HMM PF01230 YP_359282.1 identified by similarity to SP:P21478; match to protein family HMM PF01165; match to protein family HMM TIGR00030 YP_359283.1 identified by match to protein family HMM PF02637 YP_359284.1 identified by similarity to GB:BAB81727.1 YP_359285.1 identified by similarity to SP:P41028; match to protein family HMM PF06898 YP_359286.1 identified by match to protein family HMM PF00013; match to protein family HMM PF02562 YP_359287.1 identified by similarity to GB:AAM24226.1; match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277 YP_359288.1 identified by similarity to SP:Q8RB52; match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_359289.1 identified by similarity to SP:P19638; match to protein family HMM PF01219 YP_359290.1 identified by similarity to GB:CAE30615.1; match to protein family HMM PF04367 YP_359291.1 identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; match to protein family HMM TIGR00650 YP_359292.1 identified by similarity to SP:P33231; similarity to SP:Q46839; match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_359293.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_359294.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_359295.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_359296.1 identified by similarity to OMNI:NTL01BH1837; match to protein family HMM PF02589 YP_359297.1 identified by similarity to SP:P77536; match to protein family HMM PF02754 YP_359298.1 identified by similarity to SP:P29212; match to protein family HMM PF00501 YP_359299.1 identified by similarity to SP:P15027; match to protein family HMM PF02565; match to protein family HMM TIGR00613 YP_359300.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_359301.1 identified by similarity to SP:P00961; match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211 YP_359302.1 identified by similarity to GB:AAM24234.1; match to protein family HMM PF00571 YP_359303.1 identified by similarity to SP:Q9KD46; match to protein family HMM PF03618 YP_359304.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_359306.1 identified by similarity to GB:AAM23723.1 YP_359307.1 identified by match to protein family HMM PF00392 YP_359309.1 identified by match to protein family HMM PF00005 YP_359312.1 identified by similarity to SP:P37025; match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_359313.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_359314.1 dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_359315.1 identified by similarity to SP:Q08346; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391 YP_359316.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_359317.1 identified by similarity to PIR:F97060; match to protein family HMM PF04816 YP_359318.1 identified by similarity to GB:AAP28222.1; match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_359319.1 identified by similarity to PIR:F70405; match to protein family HMM PF02591 YP_359321.1 crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown YP_359323.1 identified by similarity to SP:Q8A295; match to protein family HMM PF01906 YP_359327.1 identified by match to protein family HMM PF00892 YP_359328.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_359329.1 identified by similarity to SP:P58009 YP_359331.1 identified by match to protein family HMM PF07736; match to protein family HMM TIGR01796 YP_359332.1 identified by similarity to SP:P20692; match to protein family HMM PF01842; match to protein family HMM PF02153; match to protein family HMM PF02737; match to protein family HMM PF03446; match to protein family HMM PF03807 YP_359333.1 identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361 YP_359334.1 identified by match to protein family HMM PF00384; match to protein family HMM PF04879 YP_359335.1 identified by match to protein family HMM PF00037 YP_359336.1 identified by similarity to OMNI:CT0494; match to protein family HMM PF03916 YP_359338.1 identified by similarity to SP:P36562; match to protein family HMM PF02277 YP_359339.1 identified by similarity to SP:P32397; match to protein family HMM PF01593; match to protein family HMM TIGR00562 YP_359340.1 identified by similarity to SP:P32396; match to protein family HMM PF00762; match to protein family HMM TIGR00109 YP_359341.1 identified by similarity to SP:P29680; match to protein family HMM PF01208; match to protein family HMM TIGR01464 YP_359342.1 identified by match to protein family HMM PF05034; match to protein family HMM PF07476; match to protein family HMM TIGR01502 YP_359345.1 identified by similarity to SP:P11570; match to protein family HMM PF06050 YP_359346.1 identified by similarity to OMNI:NTL01FN0792; match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_359347.1 identified by match to protein family HMM PF01571; match to protein family HMM TIGR00528 YP_359348.1 identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527 YP_359349.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_359350.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_359351.1 identified by similarity to GB:AAL81282.1; match to protein family HMM PF04055 YP_359352.1 identified by match to protein family HMM PF04055 YP_359353.1 identified by match to protein family HMM PF03099 YP_359354.1 identified by similarity to GB:AAM24100.1 YP_359355.1 identified by similarity to GB:AAM72910.1 YP_359356.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04282 YP_359357.1 identified by similarity to GP:2323346 YP_359358.1 identified by similarity to GB:BAB67557.1; match to protein family HMM PF01980; match to protein family HMM TIGR00104 YP_359359.1 identified by similarity to PIR:G97323; match to protein family HMM PF00657 YP_359360.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_359361.1 identified by match to protein family HMM PF00892 YP_359362.1 identified by similarity to SP:P10344; match to protein family HMM PF00497 YP_359363.1 identified by similarity to SP:P10345; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_359364.1 identified by similarity to SP:P27675; match to protein family HMM PF00005 YP_359365.1 identified by similarity to PIR:E97074; match to protein family HMM PF00583 YP_359367.1 identified by similarity to OMNI:NTL03CP2236 YP_359368.1 identified by similarity to SP:P16676; match to protein family HMM PF00005 YP_359370.1 identified by match to protein family HMM PF00440 YP_359373.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_359374.1 identified by match to protein family HMM PF00920; match to protein family HMM TIGR00110 YP_359375.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118 YP_359376.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_359377.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_359378.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118 YP_359379.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_359380.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_359381.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR02084; match to protein family HMM TIGR02087 YP_359382.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_359383.1 catalyzes the formation of 2-isopropylmalate from 1-methyl-2-oxobutanoate and acetyl-CoA YP_359387.1 identified by similarity to SP:Q58121 YP_359388.1 identified by similarity to PIR:G72200; match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_359392.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme YP_359393.1 identified by similarity to PIR:A83808 YP_359395.1 identified by match to protein family HMM PF01594 YP_359396.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_359398.1 identified by similarity to GB:AAM24473.1; match to protein family HMM PF06135 YP_359399.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248 YP_359400.1 identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250 YP_359401.1 identified by similarity to GB:AAM24475.1; match to protein family HMM PF06949 YP_359402.1 identified by similarity to SP:Q47747; match to protein family HMM PF04294; match to protein family HMM PF07501 YP_359403.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_359404.1 identified by similarity to GB:AAM23477.1; match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_359405.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_359406.1 identified by similarity to GB:AAO35646.1; match to protein family HMM PF01136 YP_359408.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01381 YP_359409.1 identified by similarity to PIR:H72284; match to protein family HMM TIGR02605 YP_359410.1 identified by similarity to PIR:F70426 YP_359411.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_359412.1 identified by similarity to SP:P00198; match to protein family HMM PF00037 YP_359413.1 identified by similarity to SP:P49016; match to protein family HMM PF01170; match to protein family HMM PF01209 YP_359414.1 identified by similarity to SP:P25550; match to protein family HMM PF04055 YP_359418.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00085; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_359422.1 identified by similarity to SP:O34752; match to protein family HMM PF01790; match to protein family HMM TIGR00544 YP_359423.1 selenoprotein; identified by similarity to SP:P04140 YP_359424.1 identified by similarity to GB:BAB81291.1; match to protein family HMM PF00581 YP_359425.1 identified by similarity to SP:P37687; match to protein family HMM PF00462 YP_359426.1 identified by match to protein family HMM PF02915 YP_359427.1 identified by match to protein family HMM PF01569 YP_359428.1 identified by match to protein family HMM PF03308; match to protein family HMM TIGR00750 YP_359429.1 identified by similarity to GP:151155; match to protein family HMM PF02572 YP_359430.1 identified by match to protein family HMM PF00501 YP_359431.1 identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175 YP_359432.1 identified by match to protein family HMM PF02775 YP_359433.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA YP_359434.1 identified by match to protein family HMM PF00037 YP_359435.1 identified by similarity to SP:P13154; match to protein family HMM PF00208; match to protein family HMM PF02812 YP_359437.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199 YP_359438.1 identified by match to protein family HMM PF05034; match to protein family HMM PF07476; match to protein family HMM TIGR01502 YP_359439.1 identified by similarity to PIR:H85574 YP_359440.1 identified by similarity to PIR:G90723 YP_359441.1 identified by similarity to SP:Q03221; match to protein family HMM PF00265 YP_359442.1 identified by similarity to GB:BAB59896.1; match to protein family HMM PF02629 YP_359443.1 identified by similarity to GB:AAO36151.1; match to protein family HMM PF01814 YP_359444.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_359445.1 identified by similarity to GB:AAM01575.1 YP_359447.1 identified by similarity to GB:AAN50342.1; match to protein family HMM PF02515 YP_359449.1 identified by similarity to SP:Q00594; match to protein family HMM PF00501 YP_359450.1 identified by similarity to GB:AAN51331.1; match to protein family HMM PF01661 YP_359451.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_359452.1 identified by match to protein family HMM PF01384 YP_359453.1 identified by similarity to OMNI:NTL01CA3047; match to protein family HMM PF01865 YP_359454.1 identified by match to protein family HMM PF01797 YP_359456.1 identified by similarity to GB:BAC12160.1; match to protein family HMM PF00753 YP_359457.1 identified by similarity to SP:P81186; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_359458.1 identified by match to protein family HMM PF00037 YP_359461.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_359462.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_359463.1 identified by match to protein family HMM PF00903 YP_359464.1 identified by similarity to SP:P32050; match to protein family HMM PF02335 YP_359467.1 identified by similarity to PIR:B70353 YP_359473.1 sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment YP_359475.1 identified by similarity to GB:AAO82283.1; match to protein family HMM PF00126 YP_359476.1 identified by match to protein family HMM PF02417 YP_359477.1 identified by match to protein family HMM PF00994 YP_359478.1 identified by similarity to GB:AAP28271.1; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668 YP_359479.1 identified by match to protein family HMM PF01488; match to protein family HMM TIGR00507 YP_359480.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_359481.1 identified by similarity to GB:AAM23385.1 YP_359482.1 identified by similarity to GB:BAC15100.1; match to protein family HMM PF04143 YP_359483.1 identified by similarity to OMNI:NTL01AA00822 YP_359484.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_359485.1 identified by similarity to SP:P31102; match to protein family HMM PF01202; match to protein family HMM PF01761; match to protein family HMM TIGR01357 YP_359486.1 identified by similarity to SP:P22608; match to protein family HMM PF00437; match to protein family HMM PF05157 YP_359487.1 identified by similarity to GB:AAB30824.1; match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_359488.1 identified by similarity to SP:P22609; match to protein family HMM PF00482 YP_359489.1 identified by similarity to GP:4139240; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_359490.1 identified by similarity to SP:P45794; match to protein family HMM PF01478; match to protein family HMM PF06750 YP_359491.1 identified by similarity to GB:AAB48594.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_359492.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_359493.1 identified by similarity to OMNI:NTL01XF00476; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_359495.1 identified by similarity to PIR:S75816; match to protein family HMM TIGR01175 YP_359496.1 identified by match to protein family HMM PF05137 YP_359498.1 identified by similarity to SP:P46473; match to protein family HMM PF01523 YP_359500.1 identified by match to protein family HMM TIGR01905 YP_359507.1 identified by match to protein family HMM PF01475 YP_359508.1 identified by match to protein family HMM PF01297 YP_359509.1 identified by similarity to GB:AAO79939.1; match to protein family HMM PF00950 YP_359510.1 identified by similarity to SP:O34358; match to protein family HMM PF00089; match to protein family HMM PF00595 YP_359511.1 identified by similarity to SP:P24231; match to protein family HMM PF01523 YP_359512.1 identified by similarity to SP:P33357; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580 YP_359513.1 identified by similarity to SP:P77742; match to protein family HMM PF00072; match to protein family HMM PF04397 YP_359514.1 identified by similarity to SP:P31638; match to protein family HMM PF00501; match to protein family HMM TIGR02188 YP_359519.1 identified by similarity to SP:O84102; match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 YP_359520.1 identified by similarity to GB:AAM25329.1; match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_359521.1 identified by match to protein family HMM PF01262; match to protein family HMM PF02882; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_359522.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_359523.1 identified by match to protein family HMM PF00534 YP_359524.1 identified by similarity to PIR:AB1848; match to protein family HMM PF06202 YP_359525.1 identified by similarity to SP:P31677; match to protein family HMM PF00982 YP_359526.1 identified by match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484 YP_359527.1 identified by similarity to PIR:A69437; match to protein family HMM PF00753 YP_359528.1 identified by similarity to GB:BAC12625.1 YP_359529.1 identified by similarity to SP:P54421; similarity to SP:Q01838; match to protein family HMM PF00877; match to protein family HMM PF01476 YP_359531.1 identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM TIGR01445; match to protein family HMM TIGR02504 YP_359532.1 identified by match to protein family HMM PF00376; match to protein family HMM PF01381; match to protein family HMM PF07883 YP_359533.1 identified by similarity to SP:P77671; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00857 YP_359534.1 identified by match to protein family HMM PF00857 YP_359535.1 identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421 YP_359536.1 identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148 YP_359537.1 identified by similarity to SP:P37448; match to protein family HMM PF00936 YP_359538.1 identified by similarity to SP:P37449 YP_359539.1 identified by match to protein family HMM PF00936 YP_359540.1 identified by match to protein family HMM PF00936 YP_359541.1 identified by similarity to SP:P41794; match to protein family HMM TIGR02529 YP_359543.1 identified by similarity to SP:P41792; match to protein family HMM PF03319 YP_359544.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01178 YP_359545.1 identified by similarity to SP:P19920; match to protein family HMM PF00941; match to protein family HMM PF03450 YP_359546.1 identified by similarity to SP:P19915; match to protein family HMM PF00111; match to protein family HMM PF01799 YP_359547.1 identified by similarity to GB:AAO82275.1 YP_359548.1 identified by similarity to SP:Q46808; similarity to GB:AAN69811.1 YP_359549.1 identified by match to protein family HMM PF02971; match to protein family HMM PF07837; match to protein family HMM TIGR02024 YP_359550.1 identified by similarity to SP:Q49135; match to protein family HMM PF04961 YP_359551.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_359552.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline YP_359553.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178 YP_359554.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_359555.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_359556.1 identified by match to protein family HMM PF04199 YP_359557.1 identified by similarity to GB:BAC73930.1; match to protein family HMM PF00072; match to protein family HMM PF03861 YP_359558.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_359559.1 identified by similarity to PIR:S76977; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_359560.1 identified by similarity to SP:Q9WYM9; match to protein family HMM PF00310 YP_359561.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00478; match to protein family HMM PF01645 YP_359562.1 identified by match to protein family HMM PF01493 YP_359563.1 identified by similarity to PIR:S70540; match to protein family HMM PF03861 YP_359564.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951 YP_359565.1 identified by similarity to PIR:E72299; match to protein family HMM PF01645 YP_359566.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_359567.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_359568.1 identified by similarity to GP:728610; similarity to GP:728611; match to protein family HMM PF02754 YP_359569.1 identified by match to protein family HMM PF01402 YP_359570.1 identified by match to protein family HMM PF02452 YP_359571.1 identified by similarity to GB:AAM25818.1; match to protein family HMM PF00117; match to protein family HMM PF07722 YP_359572.1 identified by match to protein family HMM PF01979 YP_359573.1 identified by match to protein family HMM PF00072 YP_359576.1 identified by similarity to GB:BAB81870.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_359577.1 identified by match to protein family HMM PF00814 YP_359578.1 identified by similarity to SP:P09453; match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_359579.1 identified by similarity to SP:P36175; match to protein family HMM PF00814; match to protein family HMM TIGR00329 YP_359580.1 identified by similarity to GB:AAO82088.1 YP_359581.1 identified by similarity to GB:AAK47531.1; match to protein family HMM PF04055 YP_359582.1 identified by similarity to SP:P76085 YP_359583.1 identified by match to protein family HMM PF01842 YP_359584.1 identified by match to protein family HMM PF01812 YP_359585.1 identified by similarity to GP:2865515; match to protein family HMM PF01257; match to protein family HMM TIGR01958 YP_359586.1 identified by similarity to OMNI:TM1425; match to protein family HMM PF00037; match to protein family HMM PF01512 YP_359587.1 selenoprotein; identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_359588.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown YP_359589.1 identified by similarity to SP:P31894; match to protein family HMM PF00037 YP_359590.1 identified by similarity to GP:15826756; match to protein family HMM PF03063; match to protein family HMM TIGR01702 YP_359591.1 identified by similarity to SP:P42435; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_359592.1 identified by match to protein family HMM PF02915 YP_359594.1 selenoprotein; identified by similarity to SP:P42974; similarity to OMNI:NTL01PF0094; match to protein family HMM TIGR02187 YP_359596.1 identified by similarity to GB:AAM24365.1; match to protein family HMM PF01205; match to protein family HMM TIGR00257 YP_359597.1 identified by similarity to PIR:E90388; match to protein family HMM PF03674 YP_359600.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate YP_359601.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_359602.1 identified by similarity to SP:P39593; match to protein family HMM PF02110; match to protein family HMM TIGR00694 YP_359603.1 identified by similarity to SP:P77785; match to protein family HMM PF02769; match to protein family HMM TIGR01379 YP_359604.1 identified by similarity to SP:P19579 YP_359605.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_359606.1 identified by match to protein family HMM PF00881 YP_359607.1 identified by similarity to SP:Q43247 YP_359608.1 identified by match to protein family HMM TIGR01470 YP_359609.2 catalyzes the ATP-dependent transport of cobalt YP_359610.1 periplasmic cobalt binding component of the cobalt transport system YP_359611.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454 YP_359612.1 identified by similarity to SP:Q05596; match to protein family HMM PF00005; match to protein family HMM PF01888; match to protein family HMM TIGR00312 YP_359613.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467 YP_359614.1 identified by match to protein family HMM TIGR02469 YP_359615.1 identified by match to protein family HMM PF00590 YP_359616.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_359617.1 identified by similarity to SP:Q05631; match to protein family HMM PF01890 YP_359618.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466 YP_359619.1 identified by match to protein family HMM PF02571; match to protein family HMM TIGR00715 YP_359620.1 identified by match to protein family HMM PF01903 YP_359621.1 identified by similarity to GP:15826199; match to protein family HMM PF02570 YP_359622.1 identified by similarity to SP:P29931; match to protein family HMM PF02283 YP_359623.1 identified by match to protein family HMM PF01656; match to protein family HMM PF07685; match to protein family HMM TIGR00313 YP_359624.1 identified by match to protein family HMM PF03186; match to protein family HMM TIGR00380 YP_359625.1 identified by match to protein family HMM PF01656; match to protein family HMM PF07685; match to protein family HMM TIGR00379 YP_359626.1 identified by match to protein family HMM PF00288 YP_359627.1 identified by similarity to GP:1895094; match to protein family HMM PF00155 YP_359628.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_359629.1 identified by similarity to GB:AAM23665.1 YP_359630.1 identified by similarity to GB:AAM23666.1 YP_359631.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766 YP_359632.1 identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM TIGR01469 YP_359633.1 identified by similarity to SP:P36561; match to protein family HMM PF02654 YP_359634.1 identified by similarity to GB:AAF00929.1; match to protein family HMM PF06089 YP_359636.1 identified by similarity to OMNI:NTL01MM2409 YP_359637.1 identified by similarity to GB:AAO81530.1; match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_359638.1 identified by similarity to GB:AAO81531.1; match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_359639.1 identified by similarity to GB:AAO81481.1; match to protein family HMM PF01547; match to protein family HMM TIGR02136 YP_359640.1 identified by similarity to SP:Q45538; match to protein family HMM PF02915; match to protein family HMM PF05067 YP_359641.2 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_359642.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_359643.1 identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730 YP_359644.1 identified by similarity to SP:Q51741; match to protein family HMM PF04055 YP_359645.1 identified by match to protein family HMM PF02597 YP_359646.1 identified by match to protein family HMM PF00899 YP_359647.1 selenoprotein; identified by similarity to SP:P32176; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553 YP_359648.1 identified by similarity to SP:P32175; match to protein family HMM PF00037 YP_359649.1 identified by similarity to SP:P32174 YP_359650.1 identified by similarity to SP:P13024 YP_359651.1 identified by similarity to PIR:C97146 YP_359652.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_359653.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_359654.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_359656.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_359657.1 identified by similarity to SP:P30747; match to protein family HMM PF01967; match to protein family HMM TIGR00581 YP_359658.1 identified by similarity to PIR:C97145; match to protein family HMM PF03473 YP_359659.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_359660.1 identified by similarity to SP:Q07200; match to protein family HMM PF00166 YP_359661.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_359662.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_359663.1 Selenoprotein. identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_359665.1 identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_359666.1 identified by similarity to GB:BAC09437.1 YP_359667.1 identified by match to protein family HMM PF01047 YP_359668.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_359669.1 identified by similarity to SP:P52067; match to protein family HMM PF07690 YP_359670.1 identified by similarity to GB:AAO34771.1; match to protein family HMM PF01643 YP_359674.1 identified by similarity to GB:AAM23684.1; match to protein family HMM PF01694 YP_359675.1 identified by similarity to GP:1848096; match to protein family HMM PF00011 YP_359680.1 identified by similarity to GB:AAM42412.1 YP_359682.1 identified by similarity to GB:AAO79448.1 YP_359683.1 identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497 YP_359684.1 identified by similarity to SP:P10485; match to protein family HMM PF01420 YP_359685.1 identified by similarity to GP:2411488; match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 YP_359686.1 identified by similarity to GB:AAN53462.1; match to protein family HMM PF01863 YP_359687.1 identified by similarity to GP:26453803; match to protein family HMM PF07665 YP_359691.1 identified by similarity to SP:P11470 YP_359695.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_359696.1 identified by similarity to SP:P94547; match to protein family HMM PF00501 YP_359697.1 identified by similarity to SP:P11570; match to protein family HMM PF06050 YP_359698.1 identified by similarity to SP:P11569; match to protein family HMM PF06050 YP_359699.1 identified by similarity to SP:P11568; match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_359701.1 detoxifies nitric oxide using NADH YP_359702.1 identified by similarity to GB:AAK76779.1; match to protein family HMM TIGR01909 YP_359703.1 identified by match to protein family HMM PF00075 YP_359705.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_359706.1 identified by match to protein family HMM PF01758 YP_359707.1 identified by match to protein family HMM PF01957 YP_359708.1 identified by match to protein family HMM PF01145 YP_359710.1 identified by match to protein family HMM PF01022 YP_359711.1 Selenoprotein. identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525 YP_359712.1 identified by similarity to GB:AAM42031.1; match to protein family HMM PF01551 YP_359713.1 identified by match to protein family HMM PF02566 YP_359714.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_359715.1 identified by similarity to PIR:C87286; match to protein family HMM PF01979 YP_359716.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411 YP_359717.1 identified by similarity to SP:P32173 YP_359718.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_359719.1 identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176 YP_359720.1 identified by match to protein family HMM PF00037 YP_359721.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411 YP_359722.1 identified by similarity to GB:BAC50913.1; match to protein family HMM PF01061 YP_359723.1 identified by similarity to PIR:H97301; match to protein family HMM PF00005 YP_359724.1 identified by match to protein family HMM PF00529 YP_359726.1 identified by similarity to PIR:AB1073 YP_359727.1 identified by similarity to SP:Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055 YP_359730.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_359731.1 identified by similarity to GB:AAM23355.1; match to protein family HMM PF01966 YP_359732.1 identified by similarity to OMNI:NTL01MM1209 YP_359733.1 identified by similarity to PIR:B97005; match to protein family HMM PF01966 YP_359735.1 identified by similarity to GB:AAN69428.1 YP_359736.1 identified by match to protein family HMM PF00015 YP_359737.1 identified by similarity to SP:Q01468; match to protein family HMM PF01361 YP_359739.1 identified by similarity to SP:P53557; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_359740.1 identified by match to protein family HMM PF00561 YP_359741.1 identified by similarity to GB:AAP25523.1 YP_359742.1 identified by similarity to GB:AAM24969.1 YP_359744.1 identified by match to protein family HMM PF01734 YP_359745.1 identified by similarity to GB:AAO34910.1; match to protein family HMM PF04055 YP_359746.1 identified by similarity to OMNI:NTL01BH2712 YP_359749.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01188 YP_359750.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR01247 YP_359752.1 identified by similarity to GB:AAD50370.1; match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_359753.1 identified by similarity to SP:P75823; match to protein family HMM PF00155; match to protein family HMM PF01212 YP_359754.1 identified by similarity to GB:AAM23351.1; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_359755.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_359756.1 identified by similarity to PIR:H97011; match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_359758.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766 YP_359759.1 identified by match to protein family HMM PF00486 YP_359761.1 identified by similarity to SP:P25126; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016 YP_359762.1 identified by similarity to SP:P80865; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019 YP_359763.1 identified by similarity to GB:AAK52053.1; match to protein family HMM PF00903 YP_359764.1 identified by similarity to PIR:T42208; match to protein family HMM PF01039 YP_359765.1 identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514 YP_359766.1 identified by similarity to GB:AAA03702.1; match to protein family HMM PF00364 YP_359767.1 catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins YP_359768.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_359769.1 identified by similarity to SP:P39823; match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_359771.1 identified by match to protein family HMM PF00165 YP_359772.1 identified by similarity to PIR:A25978; match to protein family HMM PF00465 YP_359775.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766 YP_359776.1 identified by similarity to GP:3378542; match to protein family HMM PF02754 YP_359777.1 Selenoprotein. identified by similarity to GP:728612; match to protein family HMM PF00037; match to protein family HMM PF07992 YP_359778.1 Selenoprotein. identified by similarity to GP:10802613; match to protein family HMM PF02662 YP_359779.1 identified by similarity to SP:P06130; match to protein family HMM PF00037 YP_359780.1 identified by similarity to SP:P26474; match to protein family HMM PF00037 YP_359781.1 identified by similarity to GP:2746738; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_359782.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_359784.1 identified by match to protein family HMM PF04055 YP_359785.1 identified by similarity to PIR:G70041; match to protein family HMM PF02583 YP_359786.1 identified by similarity to PIR:G90060; match to protein family HMM PF00403 YP_359787.1 identified by similarity to SP:O32220; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_359790.1 identified by similarity to PIR:C83656 YP_359791.1 identified by similarity to PIR:D83656 YP_359792.1 identified by match to protein family HMM PF00149 YP_359793.1 identified by similarity to PIR:E83947 YP_359794.1 identified by similarity to PIR:D83947 YP_359795.1 identified by similarity to PIR:C83947 YP_359796.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_359798.1 identified by match to protein family HMM PF01242 YP_359799.1 identified by similarity to GB:AAM07545.1; match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_359800.1 identified by similarity to OMNI:NTL01PA0203; match to protein family HMM PF04017 YP_359801.1 identified by similarity to GB:AAM02031.1; match to protein family HMM PF04055 YP_359802.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_359803.1 identified by similarity to PIR:E83861 YP_359804.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_359805.1 identified by similarity to SP:P37549 YP_359806.1 identified by similarity to SP:O34623; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594 YP_359807.1 identified by similarity to SP:Q00758; match to protein family HMM PF01943 YP_359808.1 identified by similarity to SP:P80868; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484 YP_359809.1 identified by similarity to PIR:G96933; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_359810.1 identified by similarity to SP:P28611; match to protein family HMM PF01618 YP_359811.1 identified by similarity to SP:P28612; match to protein family HMM PF00691 YP_359812.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_359813.1 identified by similarity to SP:P06110; match to protein family HMM PF01584 YP_359814.1 identified by similarity to SP:P29072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194 YP_359815.1 identified by similarity to SP:Q05522; match to protein family HMM PF00072; match to protein family HMM PF01339 YP_359818.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_359819.1 identified by similarity to SP:P96501; match to protein family HMM PF00669; match to protein family HMM TIGR02550 YP_359821.1 identified by match to protein family HMM PF02623 YP_359822.1 identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202 YP_359823.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01208 YP_359825.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_359826.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_359827.1 identified by match to protein family HMM PF00535 YP_359828.1 identified by similarity to SP:Q05203; match to protein family HMM PF00669; match to protein family HMM PF00700 YP_359829.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719 YP_359830.1 identified by similarity to GB:AAM23781.1 YP_359831.1 identified by match to protein family HMM PF03646 YP_359832.1 identified by similarity to SP:P24216; match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196 YP_359833.1 identified by similarity to SP:P39739; match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_359835.1 identified by similarity to PIR:G84101 YP_359837.1 identified by similarity to SP:P24500; match to protein family HMM TIGR01396 YP_359838.1 identified by similarity to SP:P75935; match to protein family HMM PF06429; match to protein family HMM TIGR01395 YP_359839.1 identified by similarity to SP:P24502; match to protein family HMM PF02049; match to protein family HMM TIGR00205 YP_359840.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_359841.1 One of three proteins involved in switching the direction of the flagellar rotation YP_359842.1 identified by similarity to GB:AAM24662.1 YP_359843.1 identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545 YP_359844.1 identified by similarity to GB:AAO36208.1 YP_359846.1 identified by match to protein family HMM PF03963 YP_359847.1 identified by similarity to OMNI:NTL01OI1563; match to protein family HMM TIGR02530 YP_359848.1 identified by similarity to SP:P23446; match to protein family HMM PF00460; match to protein family HMM PF06429 YP_359849.1 identified by match to protein family HMM PF03748 YP_359850.1 identified by similarity to SP:Q03593; match to protein family HMM PF01052 YP_359851.1 identified by similarity to PIR:F82116 YP_359852.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_359853.1 identified by similarity to SP:P35535; match to protein family HMM PF01313; match to protein family HMM TIGR01402 YP_359854.1 identified by similarity to SP:P35537; match to protein family HMM PF01311 YP_359855.1 identified by similarity to SP:P35538; match to protein family HMM PF01312; match to protein family HMM TIGR00328 YP_359856.1 membrane protein involved in the flagellar export apparatus YP_359857.1 positive regulator of class III flagellar genes YP_359858.1 identified by similarity to GB:AAC62540.2; match to protein family HMM PF01656 YP_359859.1 identified by similarity to GB:AAO36194.1 YP_359860.1 identified by similarity to SP:P10726; similarity to SP:P31804; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02479 YP_359861.1 identified by similarity to SP:P23446; match to protein family HMM PF00460; match to protein family HMM PF06429 YP_359862.1 identified by similarity to SP:P40404; match to protein family HMM PF03975 YP_359863.1 identified by similarity to SP:P31105; match to protein family HMM PF01739; match to protein family HMM PF03705 YP_359864.1 identified by similarity to SP:P40403; match to protein family HMM PF04509 YP_359865.1 identified by similarity to SP:P24072; match to protein family HMM PF00072 YP_359866.1 identified by similarity to SP:P23453; match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397 YP_359867.1 One of three proteins involved in switching the direction of the flagellar rotation YP_359868.1 identified by similarity to PIR:C97174; match to protein family HMM PF03961 YP_359870.1 identified by similarity to SP:P39215; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_359872.1 identified by match to protein family HMM PF00015 YP_359873.1 identified by similarity to SP:Q51455; match to protein family HMM PF00072 YP_359874.1 identified by similarity to GB:AAM24290.1 YP_359875.1 identified by similarity to SP:P07364; match to protein family HMM PF01739; match to protein family HMM PF03705 YP_359876.1 identified by match to protein family HMM PF00015 YP_359877.1 identified by match to protein family HMM PF01584 YP_359878.1 identified by similarity to SP:Q05522; match to protein family HMM PF00072; match to protein family HMM PF01339 YP_359879.1 identified by similarity to GB:CAB87128.1; match to protein family HMM PF00072 YP_359880.1 identified by similarity to SP:P09384; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 YP_359883.1 identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361 YP_359885.1 identified by similarity to GB:AAM23581.1; match to protein family HMM PF01950 YP_359887.1 identified by match to protein family HMM PF00534 YP_359888.1 identified by match to protein family HMM PF04029; match to protein family HMM TIGR00298 YP_359889.1 identified by similarity to SP:P37585 YP_359890.1 identified by similarity to GB:AAP26478.1; match to protein family HMM PF07561 YP_359891.1 identified by match to protein family HMM PF00015 YP_359892.1 identified by similarity to SP:P05041; match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553 YP_359895.1 identified by match to protein family HMM PF02366 YP_359896.1 identified by match to protein family HMM PF00535 YP_359897.1 identified by similarity to GB:CAD15025.1 YP_359898.1 identified by similarity to OMNI:NTL01PA0206 YP_359899.1 identified by similarity to OMNI:NTL01CA3019 YP_359901.1 identified by match to protein family HMM PF00534 YP_359902.1 identified by match to protein family HMM PF00535 YP_359903.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_359904.1 identified by similarity to GB:AAD50490.1; match to protein family HMM PF00534 YP_359905.1 identified by match to protein family HMM PF02397 YP_359906.1 identified by similarity to SP:Q9S1E6 YP_359907.1 identified by match to protein family HMM PF01436 YP_359909.1 identified by similarity to GB:AAM71385.1; match to protein family HMM PF06245 YP_359910.1 identified by match to protein family HMM PF03819 YP_359911.1 identified by similarity to GB:AAO35913.1 YP_359913.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_359914.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_359915.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_359916.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928 YP_359917.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_359918.1 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302 YP_359919.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_359920.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR01736 YP_359921.1 identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134 YP_359922.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878 YP_359923.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639 YP_359924.1 identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355 YP_359925.1 identified by match to protein family HMM PF01071; match to protein family HMM PF02842; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877 YP_359926.1 identified by similarity to GP:28202489; match to protein family HMM PF02568 YP_359927.1 identified by similarity to GB:BAB81916.1; match to protein family HMM PF02568 YP_359928.1 identified by similarity to GB:AAM23873.1; match to protein family HMM PF01371; match to protein family HMM TIGR02531 YP_359929.1 identified by similarity to SP:O34459; match to protein family HMM PF00587 YP_359930.1 identified by match to protein family HMM PF01634; match to protein family HMM TIGR00070 YP_359931.1 identified by match to protein family HMM PF00815; match to protein family HMM TIGR00069 YP_359932.1 identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141 YP_359933.1 identified by similarity to SP:O34683; match to protein family HMM PF00475 YP_359934.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07685; match to protein family HMM TIGR01855 YP_359935.1 identified by similarity to SP:O35006; match to protein family HMM PF00977; match to protein family HMM TIGR00007 YP_359936.1 identified by match to protein family HMM PF00977; match to protein family HMM TIGR00735 YP_359937.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis YP_359938.1 identified by match to protein family HMM PF01022 YP_359939.1 identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832 YP_359940.1 identified by similarity to PIR:F72273; match to protein family HMM PF02660 YP_359941.1 Selenoprotein. identified by similarity to SP:P36655; similarity to GP:6714962; match to protein family HMM PF00085; match to protein family HMM PF02683 YP_359942.1 identified by similarity to GB:AAM72950.1; match to protein family HMM TIGR00412 YP_359943.1 identified by match to protein family HMM PF03773 YP_359944.1 identified by match to protein family HMM PF01022 YP_359945.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 YP_359946.1 identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 YP_359947.1 identified by similarity to SP:O06492; match to protein family HMM PF02686; match to protein family HMM TIGR00135 YP_359948.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_359949.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_359950.1 in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis YP_359951.1 identified by match to protein family HMM PF00330; match to protein family HMM TIGR01343; match to protein family HMM TIGR02086 YP_359952.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR02087 YP_359953.1 identified by match to protein family HMM PF00180 YP_359954.1 identified by match to protein family HMM PF02517 YP_359955.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_359956.1 identified by match to protein family HMM TIGR01987 YP_359957.1 identified by similarity to GB:AAM25166.1; match to protein family HMM PF01909 YP_359958.1 identified by match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_359959.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_359960.1 identified by match to protein family HMM PF01047 YP_359961.1 identified by match to protein family HMM PF07690 YP_359962.1 identified by similarity to SP:P15026; match to protein family HMM PF01695 YP_359963.1 identified by match to protein family HMM PF00665 YP_359964.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248 YP_359965.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_359966.1 identified by similarity to SP:P00203; match to protein family HMM PF00037 YP_359967.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_359968.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_359970.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_359971.1 identified by match to protein family HMM PF00072 YP_359972.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_359973.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_359974.1 identified by similarity to SP:P23847; match to protein family HMM PF00496 YP_359975.1 identified by similarity to SP:P94311; match to protein family HMM PF00528 YP_359976.1 identified by similarity to SP:P94312; match to protein family HMM PF00528 YP_359977.1 identified by similarity to GB:BAC69158.1; match to protein family HMM PF00004; match to protein family HMM PF07728 YP_359978.1 identified by similarity to GB:CAB76247.1; match to protein family HMM PF05762 YP_359979.1 identified by similarity to GB:AAP25493.1; match to protein family HMM PF02585 YP_359980.1 identified by match to protein family HMM PF00534 YP_359981.1 identified by match to protein family HMM PF01475 YP_359982.1 identified by similarity to PIR:G84046; match to protein family HMM PF00571; match to protein family HMM PF07085 YP_359983.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_359984.1 tryptophan RNA-binding attenuator protein; binds leader Trp transcript causing transcription termination YP_359985.1 identified by similarity to GB:AAM25009.1 YP_359986.1 identified by similarity to PIR:A97338; match to protein family HMM TIGR00515 YP_359987.1 identified by similarity to SP:O34847; match to protein family HMM PF03255; match to protein family HMM TIGR00513 YP_359988.1 identified by similarity to SP:P00512; match to protein family HMM PF00365; match to protein family HMM TIGR02482 YP_359989.1 identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_359990.1 identified by similarity to SP:P39146 YP_359991.1 identified by match to protein family HMM PF01522 YP_359992.1 identified by similarity to SP:P35150; match to protein family HMM PF00768 YP_359993.1 identified by similarity to SP:Q04805; match to protein family HMM PF00675; match to protein family HMM PF05193 YP_359995.1 identified by similarity to GB:AAM24837.1 YP_359996.1 identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 YP_359997.1 catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance YP_359998.1 involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme YP_359999.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_360000.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive YP_360001.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_360002.1 identified by similarity to GB:AAP08592.1; match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_360003.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_360004.1 identified by similarity to SP:P21458; match to protein family HMM PF01580 YP_360005.1 identified by similarity to SP:P50739; match to protein family HMM PF07486 YP_360006.1 identified by similarity to GB:AAP26583.1 YP_360007.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_360008.1 identified by similarity to PIR:AI1937 YP_360009.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 YP_360010.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_360011.1 identified by similarity to SP:P16971; match to protein family HMM PF00154; match to protein family HMM TIGR02012 YP_360012.1 identified by match to protein family HMM PF02631 YP_360013.1 identified by similarity to SP:Q8RA57; match to protein family HMM PF00013; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_360015.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282 YP_360016.1 identified by similarity to SP:P45693; match to protein family HMM PF04232 YP_360017.1 identified by similarity to PIR:D75070; match to protein family HMM PF01244 YP_360018.1 identified by similarity to SP:P77434; match to protein family HMM PF00155 YP_360020.1 identified by similarity to SP:P37549; match to protein family HMM PF00269 YP_360021.1 identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM PF03060; match to protein family HMM TIGR01302 YP_360022.1 identified by similarity to GB:BAC69158.1; match to protein family HMM PF00004; match to protein family HMM PF07728 YP_360023.1 identified by similarity to PIR:G70678 YP_360029.1 identified by match to protein family HMM PF06050 YP_360030.1 identified by similarity to SP:P11568; match to protein family HMM PF01869; match to protein family HMM PF06050; match to protein family HMM TIGR00241 YP_360031.1 identified by match to protein family HMM PF00106 YP_360032.1 identified by match to protein family HMM PF01243 YP_360033.1 identified by similarity to OMNI:NTL02MA3578 YP_360035.1 identified by similarity to GB:AAM23974.1; match to protein family HMM PF01909 YP_360041.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_360044.1 identified by similarity to SP:P39134; match to protein family HMM PF06798 YP_360045.1 identified by similarity to SP:Q9KE27; match to protein family HMM PF04285 YP_360046.1 identified by similarity to SP:P37875; match to protein family HMM PF04293 YP_360048.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766 YP_360049.1 identified by similarity to SP:P31114; match to protein family HMM PF00348 YP_360050.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_360051.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_360052.1 identified by similarity to SP:P21248; match to protein family HMM PF02602 YP_360053.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_360054.1 identified by match to protein family HMM PF04055 YP_360055.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_360056.1 identified by similarity to GB:BAC14986.1 YP_360057.1 identified by match to protein family HMM PF03109 YP_360059.1 identified by similarity to SP:P31897; match to protein family HMM PF01656 YP_360060.1 in acetogenic organisms, this enzyme complex converts carbon dioxide to acetyl-CoA while in methanogenic organisms this enzyme is used to degrade acetyl-CoA to form methane and carbon dioxide; part of an enzyme complex YP_360061.1 part of a complex that catalyzes the cleavage of acetyl-CoA YP_360062.1 identified by match to protein family HMM PF00111 YP_360063.1 identified by similarity to GP:20467243; match to protein family HMM PF01656 YP_360064.1 part of a complex that catalyzes the cleavage of acetyl-CoA YP_360065.1 catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein YP_360066.1 identified by similarity to GB:AAK00236.1 YP_360067.1 identified by similarity to GP:3378542; match to protein family HMM PF02754 YP_360068.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_360069.1 identified by match to protein family HMM PF02662 YP_360070.1 identified by similarity to GB:AAM30135.1 YP_360071.1 identified by match to protein family HMM PF02219 YP_360072.1 identified by similarity to SP:O34411; match to protein family HMM PF02811; match to protein family HMM TIGR01856 YP_360073.1 identified by similarity to SP:P39787; match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_360074.1 identified by similarity to SP:P06567 YP_360075.1 identified by similarity to PIR:A96904; match to protein family HMM PF03109 YP_360076.1 identified by match to protein family HMM PF00037 YP_360077.1 identified by similarity to GB:AAM23840.1 YP_360078.1 identified by similarity to SP:O66473; match to protein family HMM PF01564; match to protein family HMM TIGR00417 YP_360079.1 identified by similarity to GB:AAG45131.1 YP_360085.1 This is one of three genes centered around a predicted transposase gene. There are two copies of the ISChy3 element in this genome. YP_360086.1 identified by similarity to SP:P18416; match to protein family HMM PF00665 YP_360087.1 This is one of three genes centered around a predicted transposase gene. There are two copies of the ISChy3 element in this genome. YP_360088.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199 YP_360089.1 identified by similarity to PIR:AD0582; match to protein family HMM PF04292 YP_360090.1 identified by similarity to PIR:B90280; match to protein family HMM PF04295 YP_360091.1 transports degraded pectin products into the bacterial cell YP_360092.1 identified by similarity to GB:AAL19126.1; match to protein family HMM PF07005 YP_360093.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_360095.1 identified by similarity to SP:O32583; match to protein family HMM PF02597; match to protein family HMM TIGR01683 YP_360096.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_360097.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center YP_360098.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate YP_360099.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_360100.1 identified by similarity to GB:BAB79804.1 YP_360101.1 identified by similarity to SP:P39408; match to protein family HMM PF01026 YP_360102.1 identified by similarity to SP:P23524; match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_360105.1 identified by match to protein family HMM PF03594 YP_360106.1 identified by similarity to PIR:D75419; match to protein family HMM PF00557 YP_360107.1 identified by match to protein family HMM PF01614 YP_360108.1 identified by match to protein family HMM PF00037 YP_360110.1 identified by similarity to SP:P39666; match to protein family HMM PF01729; match to protein family HMM PF02749 YP_360111.1 identified by match to protein family HMM PF00994 YP_360112.1 identified by similarity to GP:45682; match to protein family HMM PF01689 YP_360113.1 catalyzes the formation of acetyl-CoA from acetalaldehyde YP_360114.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate YP_360115.1 identified by similarity to PIR:AC1967; match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268 YP_360116.1 identified by similarity to PIR:E96995 YP_360117.1 identified by similarity to SP:Q9X059; match to protein family HMM PF01969; match to protein family HMM TIGR00299 YP_360118.1 identified by similarity to SP:P40881; match to protein family HMM PF00132 YP_360122.1 identified by similarity to SP:P45359; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_360123.1 identified by similarity to PIR:AD0582; match to protein family HMM PF04292 YP_360124.1 identified by similarity to GB:AAL19601.1; match to protein family HMM PF04295 YP_360125.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_360126.1 identified by similarity to SP:P52041; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_360127.1 identified by similarity to SP:P52046; match to protein family HMM PF00378 YP_360128.1 identified by similarity to OMNI:NTL03CP0914 YP_360130.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_360131.1 identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913 YP_360132.1 identified by match to protein family HMM PF01565 YP_360133.1 identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754 YP_360135.1 identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787 YP_360136.1 identified by similarity to GB:AAL29685.1; match to protein family HMM PF04290 YP_360137.1 identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_360138.1 identified by similarity to PIR:F72214 YP_360140.1 identified by match to protein family HMM PF00106 YP_360141.1 identified by similarity to SP:Q06004; match to protein family HMM PF00107 YP_360143.1 identified by match to protein family HMM PF00994 YP_360144.1 identified by match to protein family HMM PF00037 YP_360145.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA YP_360146.1 identified by match to protein family HMM PF02775 YP_360147.1 identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175 YP_360148.1 identified by similarity to SP:P55792; match to protein family HMM PF03241 YP_360152.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199 YP_360153.1 identified by match to protein family HMM PF01070 YP_360154.1 identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 YP_360155.1 identified by match to protein family HMM PF02040 YP_360156.1 identified by match to protein family HMM PF01689 YP_360157.1 identified by similarity to SP:Q06319; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_360158.1 identified by similarity to SP:P38942; match to protein family HMM PF02550 YP_360159.1 identified by match to protein family HMM PF01012 YP_360160.1 identified by similarity to SP:P94551; match to protein family HMM PF00766; match to protein family HMM PF01012 YP_360161.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_360162.1 identified by similarity to SP:P81535; match to protein family HMM PF00557 YP_360163.1 identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730 YP_360166.1 identified by similarity to PIR:AB1492; match to protein family HMM PF06032 YP_360167.1 identified by similarity to SP:Q46802; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_360169.1 identified by similarity to SP:P25525; match to protein family HMM PF02133 YP_360170.1 identified by match to protein family HMM PF06032 YP_360171.1 identified by match to protein family HMM PF01968; match to protein family HMM PF05378 YP_360172.1 identified by similarity to SP:Q00924; match to protein family HMM PF01177 YP_360173.1 identified by similarity to SP:P08337; match to protein family HMM PF00293 YP_360174.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_360175.1 identified by similarity to OMNI:NTL01OI1982 YP_360176.1 identified by match to protein family HMM PF00896 YP_360177.1 identified by match to protein family HMM PF00069; match to protein family HMM PF07714 YP_360178.1 identified by match to protein family HMM PF03358 YP_360179.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_360182.1 identified by match to protein family HMM PF00365; match to protein family HMM TIGR02483 YP_360183.1 identified by similarity to SP:Q06319; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_360184.1 identified by similarity to SP:P38942; match to protein family HMM PF02550 YP_360185.1 identified by similarity to SP:P94550; match to protein family HMM PF01012 YP_360186.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_360188.1 identified by similarity to SP:P76461; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_360189.1 identified by similarity to OMNI:NTL01TT1568; match to protein family HMM PF04463 YP_360190.1 identified by match to protein family HMM PF04055 YP_360191.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_360192.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199 YP_360193.1 identified by similarity to SP:P28628; match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_360194.1 identified by similarity to SP:P33925 YP_360195.1 identified by similarity to SP:P19499; match to protein family HMM PF00037; match to protein family HMM PF04422; match to protein family HMM PF04432 YP_360196.1 identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787 YP_360197.1 identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_360198.1 identified by match to protein family HMM PF04290 YP_360199.1 identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787 YP_360200.1 identified by match to protein family HMM PF00072 YP_360201.1 identified by similarity to SP:P16468; match to protein family HMM PF00390; match to protein family HMM PF03949 YP_360202.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_360204.1 identified by match to protein family HMM PF01127 YP_360205.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_360206.1 identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723 YP_360207.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid YP_360208.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199 YP_360210.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01726; match to protein family HMM TIGR00498 YP_360214.1 identified by similarity to SP:P30962; match to protein family HMM PF01578 YP_360215.1 identified by similarity to SP:P29960; match to protein family HMM PF03379 YP_360216.1 identified by similarity to SP:P46903; match to protein family HMM PF00005 YP_360218.1 identified by similarity to GB:AAN37247.1 YP_360219.1 identified by similarity to SP:P33927; match to protein family HMM PF01578 YP_360222.1 identified by similarity to PIR:C69888; match to protein family HMM PF01053; match to protein family HMM PF06838 YP_360223.1 identified by similarity to SP:P27643; match to protein family HMM PF00004 YP_360224.1 identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM PF04748 YP_360225.1 identified by similarity to SP:P25521; match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_360226.1 identified by similarity to SP:P16384; match to protein family HMM PF01715; match to protein family HMM TIGR00174 YP_360227.1 identified by similarity to OMNI:NTL01BH2370 YP_360228.1 In low GC gram positive bacteria, the DNA mismatch repair system composed of hexA and hexB is the functional equivalent of the mutS/mutL system found in other prokaryotes.; identified by similarity to SP:P49850; match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585 YP_360229.1 In low GC gram positive bacteria, the DNA mismatch repair system composed of hexA and hexB is the functional equivalent of the mutS/mutL system found in other prokaryotes.; identified by match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070 YP_360230.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_360232.1 identified by similarity to PIR:T47194 YP_360234.1 identified by similarity to GB:AAM23577.1 YP_360235.1 identified by similarity to GB:AAM23577.1 YP_360236.1 identified by similarity to SP:P49940; match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_360237.1 identified by similarity to SP:Q01463; match to protein family HMM PF03775; match to protein family HMM TIGR01222 YP_360238.1 identified by match to protein family HMM PF00293 YP_360241.1 identified by similarity to GB:AAM25019.1 YP_360242.1 identified by similarity to GB:AAM23610.1 YP_360243.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_360244.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_360245.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_360246.1 identified by similarity to SP:Q8R5S3; match to protein family HMM PF02021 YP_360247.1 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01770 YP_360248.1 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972 YP_360249.1 identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974 YP_360250.1 identified by similarity to SP:P50940; match to protein family HMM PF00420 YP_360251.1 identified by similarity to SP:P26523; match to protein family HMM PF00499 YP_360252.1 identified by similarity to SP:Q00236; match to protein family HMM PF00037; match to protein family HMM TIGR01971 YP_360253.1 identified by similarity to SP:P26522; match to protein family HMM PF00146 YP_360254.1 catalyzes the transfer of electrons from NADH to ubiquinone YP_360255.1 Catalyzes the transfer of electrons from NADH to quinone YP_360256.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_360257.1 identified by similarity to SP:Q9ZDH1; match to protein family HMM PF00507 YP_360258.1 identified by similarity to SP:O31744; match to protein family HMM PF01351 YP_360259.1 identified by similarity to GB:AAP10758.1; match to protein family HMM PF01926; match to protein family HMM TIGR00650 YP_360260.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_360261.1 identified by similarity to GB:AAL94488.1 YP_360262.1 identified by similarity to SP:P07020; match to protein family HMM PF01746; match to protein family HMM TIGR00088 YP_360263.1 identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273 YP_360264.1 identified by similarity to SP:Q97I96 YP_360265.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_360266.1 identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_360267.1 identified by match to protein family HMM PF04297; match to protein family HMM TIGR01199 YP_360268.1 identified by similarity to SP:P42588; match to protein family HMM PF00202 YP_360269.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02475; match to protein family HMM PF03602 YP_360270.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_360271.1 identified by similarity to SP:P11550; match to protein family HMM PF00596 YP_360272.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_360273.1 Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate YP_360274.1 identified by similarity to SP:P51835; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_360275.1 identified by similarity to SP:P51834; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_360276.1 identified by similarity to SP:P51833; match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191 YP_360277.1 identified by similarity to SP:P73283; match to protein family HMM PF00109; match to protein family HMM PF02801 YP_360278.1 carries the fatty acid chain in fatty acid biosynthesis YP_360279.1 identified by similarity to SP:P51831; match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM TIGR01830 YP_360280.1 identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_360281.1 identified by similarity to PIR:E95048; match to protein family HMM PF00478; match to protein family HMM PF03060 YP_360282.1 identified by similarity to SP:O34746; match to protein family HMM TIGR00747 YP_360283.1 identified by similarity to SP:P71018; match to protein family HMM PF02504; match to protein family HMM TIGR00182 YP_360284.1 negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria YP_360285.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_360286.1 identified by similarity to PIR:H83972; match to protein family HMM PF02620 YP_360287.1 identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016 YP_360288.1 identified by similarity to SP:P39646; match to protein family HMM PF01515; match to protein family HMM TIGR00651 YP_360290.1 identified by similarity to GB:AAM24704.1 YP_360291.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_360292.1 identified by similarity to GB:AAM24706.1; match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_360293.1 identified by similarity to PIR:F71176; match to protein family HMM PF03692 YP_360294.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination YP_360295.1 identified by similarity to SP:P06551; match to protein family HMM PF00269 YP_360296.1 identified by similarity to SP:P04833; match to protein family HMM PF00269 YP_360300.1 catalyzes branch migration in Holliday junction intermediates YP_360301.1 required for 70S ribosome assembly YP_360302.1 identified by similarity to SP:P45803; match to protein family HMM PF01430 YP_360303.1 identified by similarity to GB:AAM23945.1; match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_360304.1 identified by similarity to SP:P11998; match to protein family HMM PF00885; match to protein family HMM TIGR00114 YP_360305.1 identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506 YP_360306.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_360307.1 identified by similarity to SP:P17618; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_360308.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_360309.1 identified by similarity to GB:AAO35795.1; match to protein family HMM PF03193; match to protein family HMM TIGR00157 YP_360310.1 identified by similarity to SP:Q8R9T6; match to protein family HMM PF00069; match to protein family HMM PF03793 YP_360311.1 identified by match to protein family HMM PF00481 YP_360312.1 identified by similarity to GB:AAO35792.1; match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_360313.1 identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_360314.1 identified by similarity to PIR:H75216 YP_360315.1 identified by similarity to SP:P23882; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 YP_360316.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_360317.1 identified by similarity to SP:P94461; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595 YP_360318.1 identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521 YP_360319.1 identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690 YP_360320.1 identified by similarity to SP:P24234; match to protein family HMM PF00625 YP_360321.1 identified by match to protein family HMM PF04025 YP_360322.1 identified by similarity to GB:AAM24730.1; match to protein family HMM PF03755; match to protein family HMM TIGR00255 YP_360323.1 identified by similarity to SP:P53001; match to protein family HMM PF00155 YP_360324.1 catalyzes the formation of LL-diaminopimelate from tetrahydrodipicolinate; involved in lysine and peptidoglycan synthesis YP_360325.1 identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 YP_360326.1 identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833 YP_360327.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_360328.1 identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740 YP_360329.1 identified by similarity to SP:P25996; match to protein family HMM PF01180; match to protein family HMM TIGR01037 YP_360330.1 identified by similarity to SP:P25983; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_360331.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369 YP_360332.1 identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368 YP_360333.1 identified by similarity to SP:P25995; match to protein family HMM PF01979; match to protein family HMM TIGR00857 YP_360334.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670 YP_360335.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_360336.1 identified by similarity to PIR:AC2463 YP_360337.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_360338.1 identified by similarity to SP:Q45479; match to protein family HMM PF01252; match to protein family HMM TIGR00077 YP_360339.1 identified by similarity to OMNI:NTL03PA04724 YP_360340.1 identified by similarity to GB:AAM24777.1 YP_360341.1 identified by match to protein family HMM PF05167 YP_360342.1 ACT domain-containing protein YP_360343.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_360344.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_360345.1 identified by similarity to GB:AAO35504.1; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_360346.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739 YP_360347.1 identified by similarity to SP:Q54177; match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449 YP_360348.1 identified by similarity to SP:O32054; match to protein family HMM PF02547; match to protein family HMM TIGR00113 YP_360349.1 identified by similarity to SP:P07372; match to protein family HMM TIGR02669 YP_360350.1 identified by similarity to GB:AAM23421.1 YP_360351.1 Heat shock-induced YP_360352.1 identified by similarity to GB:AAN51377.1 YP_360353.1 identified by similarity to PIR:F72338; match to protein family HMM PF02677 YP_360354.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_360355.1 identified by match to protein family HMM PF00633; match to protein family HMM PF01330; match to protein family HMM TIGR00084 YP_360356.1 identified by match to protein family HMM PF02075; match to protein family HMM TIGR00228 YP_360357.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_360358.1 identified by match to protein family HMM PF02540; match to protein family HMM PF06508; match to protein family HMM TIGR00552 YP_360359.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_360360.1 identified by similarity to GB:AAM24711.1; match to protein family HMM PF02734 YP_360361.1 identified by similarity to GB:AAP09166.1; match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_360363.1 identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_360364.1 identified by match to protein family HMM PF01464 YP_360365.1 identified by similarity to PIR:A69361; match to protein family HMM PF02653 YP_360366.1 identified by similarity to PIR:A95098; match to protein family HMM PF02653 YP_360367.1 identified by similarity to GB:AAP27657.1; match to protein family HMM PF00005 YP_360368.1 identified by match to protein family HMM PF02608 YP_360369.1 identified by similarity to SP:P42034; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124 YP_360370.1 identified by similarity to SP:P24192; match to protein family HMM PF01924 YP_360371.1 identified by similarity to GP:15430693; match to protein family HMM PF01455; match to protein family HMM TIGR00074 YP_360372.1 identified by similarity to SP:P30131; match to protein family HMM PF00708; match to protein family HMM PF00814; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143 YP_360373.1 identified by similarity to SP:P24190; match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_360374.1 identified by similarity to SP:P24189; match to protein family HMM PF01155 YP_360375.1 identified by similarity to SP:P37182; match to protein family HMM PF01750; match to protein family HMM TIGR00072 YP_360376.1 identified by similarity to SP:P31875; match to protein family HMM PF01292; match to protein family HMM TIGR02125 YP_360377.1 identified by similarity to SP:P21852; match to protein family HMM PF00374 YP_360378.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409 YP_360379.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00158; match to protein family HMM PF02906; match to protein family HMM PF02954; match to protein family HMM PF04060; match to protein family HMM TIGR01199 YP_360380.1 identified by similarity to GB:AAM24071.1; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650 YP_360381.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_360384.1 identified by match to protein family HMM PF01791; match to protein family HMM TIGR00126 YP_360385.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354 YP_360386.1 identified by similarity to SP:P39142; match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644 YP_360387.1 identified by similarity to SP:P11550; match to protein family HMM PF00596 YP_360388.1 identified by match to protein family HMM PF01008; match to protein family HMM TIGR00512; match to protein family HMM TIGR00524 YP_360389.1 identified by similarity to GP:28204284 YP_360390.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_360392.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_360393.1 identified by similarity to SP:P94545; match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069 YP_360394.1 identified by match to protein family HMM PF01136 YP_360396.1 identified by match to protein family HMM PF02245; match to protein family HMM TIGR00567 YP_360397.1 identified by match to protein family HMM PF00633; match to protein family HMM PF02811 YP_360398.1 identified by similarity to GB:AAM24888.1 YP_360399.1 identified by similarity to SP:P17922; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472 YP_360400.1 identified by similarity to SP:P08312; match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468 YP_360402.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_360403.1 identified by similarity to GB:BAA31234.1; match to protein family HMM PF02080; match to protein family HMM PF02254 YP_360404.1 identified by similarity to GB:BAC59168.1; match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_360405.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_360406.1 identified by similarity to SP:P55874; match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_360407.1 identified by similarity to SP:P03000; match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 YP_360408.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_360409.1 identified by similarity to GB:AAL95414.1 YP_360410.1 identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262 YP_360411.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_360412.1 identified by similarity to SP:Q56320; match to protein family HMM PF00697 YP_360413.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_360414.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM TIGR01245 YP_360415.1 identified by similarity to SP:P28819; match to protein family HMM PF00117; match to protein family HMM TIGR00566 YP_360416.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00564 YP_360417.1 identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361 YP_360418.1 identified by similarity to GB:AAO36766.1 YP_360419.1 identified by match to protein family HMM PF01522 YP_360420.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_360422.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_360423.1 identified by match to protein family HMM PF00597 YP_360424.1 identified by similarity to PIR:C96993 YP_360425.1 identified by similarity to GB:AAP11049.1; match to protein family HMM PF00753 YP_360426.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_360427.1 identified by similarity to SP:P94551; match to protein family HMM PF00766; match to protein family HMM PF01012 YP_360428.1 identified by similarity to SP:P94550; match to protein family HMM PF01012 YP_360429.1 identified by similarity to SP:P52046; match to protein family HMM PF00378 YP_360430.1 identified by similarity to SP:Q06319; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_360431.1 identified by similarity to SP:P52041; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_360432.1 identified by similarity to SP:P45855; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_360433.1 identified by match to protein family HMM PF00440 YP_360435.1 identified by similarity to SP:P45867; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_360436.1 identified by similarity to SP:P07871; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_360437.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_360438.1 identified by similarity to SP:Q97HD1 YP_360439.1 identified by match to protein family HMM TIGR01905 YP_360441.1 identified by similarity to SP:P94547; match to protein family HMM PF00501 YP_360442.1 identified by match to protein family HMM PF01810 YP_360443.1 identified by similarity to SP:P16936; match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_360444.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_360445.1 PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex YP_360447.1 identified by match to protein family HMM PF00723 YP_360448.1 identified by similarity to SP:P27611; match to protein family HMM PF03553 YP_360450.1 identified by match to protein family HMM PF01142 YP_360451.1 identified by similarity to SP:P77145; match to protein family HMM PF01566 YP_360452.1 identified by match to protein family HMM PF00501 YP_360453.1 with CbiNQ forms the ABC transporter for cobalt import YP_360454.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454 YP_360455.1 identified by similarity to GB:AAL80654.1 YP_360456.1 identified by match to protein family HMM PF01891 YP_360457.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_360460.1 identified by similarity to OMNI:NTL01NS3189; match to protein family HMM PF02586 YP_360461.1 identified by similarity to GB:BAC51006.1 YP_360463.1 identified by match to protein family HMM PF02632 YP_360464.1 identified by similarity to GB:AAM25542.1 YP_360465.1 identified by similarity to SP:P43270; match to protein family HMM PF00565 YP_360467.1 identified by match to protein family HMM PF01464 YP_360468.1 identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152 YP_360469.1 identified by match to protein family HMM PF02659 YP_360470.1 identified by match to protein family HMM PF01149; match to protein family HMM PF06831; match to protein family HMM TIGR00577 YP_360471.1 identified by similarity to SP:P52026; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 YP_360472.1 identified by similarity to SP:Q81M86; match to protein family HMM PF00817 YP_360473.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510 YP_360474.1 identified by similarity to OMNI:EF1485 YP_360484.1 identified by similarity to OMNI:NTL01FN2063 YP_360485.1 identified by similarity to GB:BAC63640.1; match to protein family HMM TIGR02126 YP_360500.1 identified by match to protein family HMM PF04466; match to protein family HMM TIGR01547 YP_360501.1 identified by match to protein family HMM PF03592 YP_360502.1 identified by similarity to GB:AAM99447.1 YP_360503.1 identified by match to protein family HMM TIGR01636 YP_360504.1 identified by similarity to SP:P39792 YP_360506.1 identified by similarity to SP:P07905 YP_360508.1 identified by similarity to PIR:E70506; match to protein family HMM PF07505 YP_360509.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913 YP_360510.1 identified by similarity to GP:13310603 YP_360514.1 identified by match to protein family HMM PF01381 YP_360516.1 identified by match to protein family HMM PF01381 YP_360517.1 identified by similarity to SP:P03035; match to protein family HMM PF00717; match to protein family HMM PF01381 YP_360518.1 identified by similarity to SP:P43270; match to protein family HMM PF00565 YP_360519.1 identified by similarity to SP:P43270; match to protein family HMM PF00565 YP_360520.1 identified by match to protein family HMM PF04471 YP_360521.1 identified by similarity to GB:AAN57234.1 YP_360522.1 identified by match to protein family HMM PF00589 YP_360523.1 identified by similarity to GB:AAO35655.1 YP_360524.1 identified by similarity to OMNI:NTL01BS2756 YP_360526.1 identified by match to protein family HMM PF00376 YP_360527.1 identified by similarity to OMNI:NTL02MA0402 YP_360528.1 identified by similarity to SP:Q04944; match to protein family HMM PF00465 YP_360529.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_360531.1 identified by similarity to GB:AAL81606.1; match to protein family HMM PF02597 YP_360532.1 identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730 YP_360533.1 identified by match to protein family HMM PF00037 YP_360536.1 identified by similarity to GB:BAB66795.1; match to protein family HMM PF01909; match to protein family HMM PF05168 YP_360541.1 identified by similarity to GB:AAM24309.1; match to protein family HMM TIGR01552 YP_360542.1 identified by similarity to GB:AAM24310.1 YP_360543.1 identified by similarity to OMNI:NTL01CA3484; match to protein family HMM PF03190 YP_360544.1 identified by similarity to GB:AAN58508.1; match to protein family HMM PF02517 YP_360548.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_360549.1 identified by similarity to GB:BAB39459.1; match to protein family HMM PF00561 YP_360550.1 identified by match to protein family HMM PF03241 YP_360551.1 identified by similarity to SP:P29212; match to protein family HMM PF00501 YP_360552.1 identified by similarity to SP:P45867; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_360554.1 identified by similarity to GB:AAM04461.1; match to protein family HMM PF04015 YP_360555.1 identified by similarity to SP:P29212; match to protein family HMM PF00501 YP_360556.1 identified by similarity to GB:CAE33263.1; match to protein family HMM PF00378 YP_360557.1 identified by similarity to SP:P52042; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_360558.1 identified by similarity to SP:P45359; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_360559.1 identified by similarity to SP:P52046; match to protein family HMM PF00378 YP_360560.1 identified by similarity to SP:P52041; match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737 YP_360561.1 identified by similarity to GB:AAM02590.1; match to protein family HMM PF01796 YP_360562.1 identified by similarity to SP:P24249 YP_360563.1 identified by similarity to GB:AAM30566.1; match to protein family HMM PF00108; match to protein family HMM PF02803 YP_360564.1 identified by similarity to SP:P52042; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_360565.1 identified by match to protein family HMM PF01614 YP_360566.1 identified by similarity to SP:O32583; match to protein family HMM PF02597 YP_360567.1 identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730 YP_360568.1 identified by similarity to SP:P13604; match to protein family HMM PF00465 YP_360570.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_360572.1 identified by match to protein family HMM PF00005 YP_360573.1 identified by similarity to GB:AAP07470.1 YP_360576.1 identified by similarity to SP:P50739; match to protein family HMM PF01471; match to protein family HMM PF07486 YP_360577.1 identified by similarity to SP:P12638; match to protein family HMM PF01261; match to protein family HMM TIGR00587 YP_360578.1 identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_360580.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_360582.1 identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083 YP_360583.1 identified by similarity to SP:P32732; match to protein family HMM PF01509; match to protein family HMM TIGR00431 YP_360584.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_360585.1 identified by similarity to SP:P32731; match to protein family HMM PF02033; match to protein family HMM TIGR00082 YP_360586.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_360587.1 identified by match to protein family HMM PF01248 YP_360588.1 identified by similarity to GB:AAO81065.1; match to protein family HMM PF04296 YP_360589.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_360590.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_360592.1 identified by match to protein family HMM PF00929; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00573; match to protein family HMM TIGR01405 YP_360593.1 identified by match to protein family HMM PF01842; match to protein family HMM PF02308 YP_360594.1 identified by match to protein family HMM PF00535 YP_360595.1 identified by similarity to SP:P16659; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF04073; match to protein family HMM TIGR00409 YP_360596.1 identified by match to protein family HMM PF04551; match to protein family HMM TIGR00612 YP_360597.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_360598.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_360599.1 identified by match to protein family HMM PF01594 YP_360600.1 identified by similarity to SP:O31752; match to protein family HMM PF01148 YP_360601.1 identified by similarity to SP:O82827; match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_360602.1 identified by similarity to GP:144806; match to protein family HMM PF00037 YP_360604.1 identified by similarity to SP:P16174; match to protein family HMM PF01765; match to protein family HMM TIGR00496 YP_360605.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075 YP_360606.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_360607.1 identified by similarity to SP:P21464; match to protein family HMM PF00318; match to protein family HMM TIGR01011 YP_360609.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_360610.1 heat shock protein involved in degradation of misfolded proteins YP_360611.1 heat shock protein involved in degradation of misfolded proteins YP_360612.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_360613.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_360614.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051 YP_360615.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_360617.1 identified by similarity to GB:BAC70657.1 YP_360618.1 identified by match to protein family HMM PF00881 YP_360619.1 identified by similarity to GB:AAL80827.1 YP_360620.1 identified by similarity to GP:28203150; match to protein family HMM PF03358 YP_360622.1 identified by similarity to SP:P14081; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475 YP_360623.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_360624.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423 YP_360625.1 identified by similarity to GP:1813469; match to protein family HMM PF02621 YP_360626.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423 YP_360627.1 identified by match to protein family HMM PF01040; match to protein family HMM TIGR01475 YP_360628.1 identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148 YP_360629.1 identified by similarity to SP:O86169; match to protein family HMM PF01170; match to protein family HMM PF01209; match to protein family HMM TIGR01934 YP_360630.1 identified by similarity to PIR:A81213 YP_360631.1 Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_360632.1 identified by match to protein family HMM PF01557 YP_360634.1 identified by match to protein family HMM PF00534 YP_360635.1 identified by match to protein family HMM TIGR01448 YP_360636.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_360638.1 identified by similarity to SP:Q9X4A7; match to protein family HMM PF02073 YP_360640.1 identified by similarity to SP:P09548; match to protein family HMM PF00597 YP_360644.1 identified by similarity to SP:P31896; match to protein family HMM PF03063; match to protein family HMM TIGR01702 YP_360645.1 identified by similarity to SP:P31894; match to protein family HMM PF00037 YP_360646.1 identified by similarity to SP:P24189; match to protein family HMM PF01155; match to protein family HMM TIGR00100 YP_360647.1 identified by similarity to SP:P31895; match to protein family HMM PF00346 YP_360648.1 identified by similarity to GP:1515470; match to protein family HMM PF00329 YP_360649.1 identified by similarity to GP:1515469; match to protein family HMM PF00037 YP_360650.1 identified by similarity to GP:1515468; match to protein family HMM PF01058 YP_360651.1 identified by similarity to GP:1515467; match to protein family HMM PF00146 YP_360652.1 identified by similarity to GP:1515466; match to protein family HMM PF00361 YP_360654.1 identified by similarity to SP:P31897; match to protein family HMM PF01656 YP_360655.1 identified by similarity to SP:P29283; match to protein family HMM PF00027 YP_360656.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate YP_360657.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters YP_360658.1 identified by similarity to SP:P13032; match to protein family HMM PF01266; match to protein family HMM PF04324 YP_360659.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311 YP_360660.1 identified by similarity to SP:Q9X1E3; match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_360663.1 identified by similarity to SP:P30300; match to protein family HMM PF04309 YP_360664.1 identified by similarity to PIR:A75600; match to protein family HMM PF02585 YP_360665.1 identified by similarity to SP:Q06198; similarity to SP:Q45585; match to protein family HMM PF04542 YP_360669.1 identified by match to protein family HMM PF01522 YP_360670.1 identified by similarity to SP:P42334; match to protein family HMM PF01569 YP_360671.1 identified by match to protein family HMM PF01522 YP_360672.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409 YP_360673.1 identified by similarity to OMNI:AF0500; match to protein family HMM PF03916 YP_360674.1 identified by match to protein family HMM PF00037 YP_360675.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_360676.1 identified by similarity to SP:Q06067; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_360677.1 identified by match to protein family HMM PF04392 YP_360678.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_360682.1 identified by match to protein family HMM PF01381 YP_360683.1 identified by similarity to SP:P52599; match to protein family HMM PF00529 YP_360684.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_360685.1 identified by similarity to GB:CAE34050.1; match to protein family HMM PF01978 YP_360686.1 identified by similarity to GB:AAM24033.1 YP_360687.1 identified by match to protein family HMM PF00892 YP_360688.1 identified by similarity to GB:AAP68417.1; match to protein family HMM PF04542 YP_360689.1 identified by similarity to GB:AAM24763.1 YP_360690.1 identified by match to protein family HMM PF00583 YP_360691.1 identified by similarity to GB:AAO35996.1; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_360692.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_360693.1 identified by similarity to GP:1915907; match to protein family HMM PF00557 YP_360694.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_360695.1 identified by similarity to GB:AAM23351.1; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; match to protein family HMM TIGR00277 YP_360698.1 identified by match to protein family HMM PF00763; match to protein family HMM PF02882 YP_360699.1 identified by similarity to SP:Q49135; match to protein family HMM PF04961 YP_360702.1 identified by similarity to OMNI:NTL01BH0310 YP_360703.1 identified by similarity to GB:AAM23974.1; match to protein family HMM PF01909 YP_360709.1 identified by similarity to SP:P41363 YP_360714.1 identified by similarity to PIR:E83688 YP_360716.1 identified by similarity to GB:AAM23974.1; match to protein family HMM PF01909 YP_360720.1 identified by match to protein family HMM PF01471 YP_360721.1 identified by similarity to GB:AAP27784.1 YP_360722.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01392 YP_360723.1 identified by similarity to PIR:T44655; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326 YP_360724.1 identified by similarity to GB:AAM23355.1; match to protein family HMM PF01966 YP_360725.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_360727.1 identified by match to protein family HMM PF01381 YP_360728.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_360729.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00191 YP_360730.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_360731.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_360732.1 identified by similarity to SP:P21204; match to protein family HMM PF01842 YP_360733.1 identified by similarity to GB:CAD86343.1; match to protein family HMM PF01850 YP_360734.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_360735.1 identified by similarity to SP:P35149 YP_360736.1 identified by similarity to SP:P46919; match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03807; match to protein family HMM PF07479 YP_360737.1 identified by similarity to SP:Q8R9J2; match to protein family HMM PF02660; match to protein family HMM TIGR00023 YP_360738.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_360739.1 identified by similarity to OMNI:NTL01NS1209; match to protein family HMM PF04459 YP_360741.1 identified by similarity to GB:AAM24823.1 YP_360742.1 identified by similarity to SP:P37968 YP_360743.1 identified by match to protein family HMM PF07758 YP_360744.1 these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_360745.1 identified by similarity to SP:Q49402; match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_360746.1 identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017 YP_360747.1 identified by match to protein family HMM PF00275; match to protein family HMM TIGR01356 YP_360748.1 identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141 YP_360749.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_360750.1 identified by similarity to SP:P28819; match to protein family HMM PF00117; match to protein family HMM TIGR00566 YP_360751.1 identified by match to protein family HMM PF07736; match to protein family HMM TIGR01796 YP_360753.1 identified by similarity to GB:BAB80659.1; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_360757.1 identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_360758.1 identified by similarity to PIR:AE2020; match to protein family HMM PF01569 YP_360759.1 identified by similarity to SP:P35158; match to protein family HMM PF07670 YP_360760.1 identified by similarity to SP:P35157; match to protein family HMM PF07670 YP_360762.1 identified by similarity to OMNI:NTL01TT1234 YP_360764.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_360765.1 identified by similarity to GB:AAM24548.1; match to protein family HMM PF02616 YP_360766.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_360767.1 identified by match to protein family HMM PF02163 YP_360768.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743 YP_360769.1 identified by similarity to SP:P39570; match to protein family HMM PF01490; match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_360770.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_360771.1 identified by similarity to SP:P11568; match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_360772.1 identified by similarity to GB:AAM25018.1 YP_360773.1 identified by similarity to GB:AAM25019.1 YP_360774.1 identified by similarity to SP:P40870; match to protein family HMM PF03862 YP_360775.1 identified by similarity to SP:P40869 YP_360776.1 identified by similarity to SP:P40868; match to protein family HMM PF03862 YP_360777.1 identified by similarity to GB:AAM24542.1; match to protein family HMM PF07311 YP_360778.1 identified by similarity to SP:P07860; similarity to SP:P19940; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545 YP_360779.1 binds to sigma F preventing its association with RNA polymerase during sporulation YP_360780.1 identified by similarity to SP:P10727; match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_360781.1 identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943 YP_360782.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_360783.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225 YP_360784.1 identified by similarity to SP:P37873 YP_360785.1 identified by similarity to OMNI:NTL01MK0780 YP_360786.1 identified by similarity to GB:AAM24533.1 YP_360787.1 identified by match to protein family HMM PF00037 YP_360788.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_360789.1 identified by match to protein family HMM PF01558 YP_360790.1 identified by match to protein family HMM PF02775 YP_360791.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA YP_360792.1 identified by match to protein family HMM PF00037 YP_360793.1 identified by similarity to GB:AAM24532.1 YP_360794.1 identified by match to protein family HMM PF00535 YP_360795.1 identified by similarity to GB:AAM24530.1 YP_360796.1 identified by match to protein family HMM PF04263 YP_360797.1 identified by similarity to GP:7576238; match to protein family HMM PF00072 YP_360798.1 identified by similarity to SP:P17896; match to protein family HMM PF05580 YP_360799.1 identified by match to protein family HMM TIGR00634 YP_360800.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863; match to protein family HMM TIGR01529 YP_360801.1 identified by similarity to OMNI:NTL01LM1654; match to protein family HMM PF06962 YP_360802.1 identified by match to protein family HMM PF01513 YP_360803.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_360804.1 identified by similarity to SP:P77488; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00204 YP_360805.1 identified by similarity to GB:AAO36123.1 YP_360807.1 identified by similarity to SP:Q08291; match to protein family HMM PF00348 YP_360808.1 identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280 YP_360809.1 identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237 YP_360810.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_360811.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970 YP_360813.1 identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951 YP_360816.1 identified by similarity to OMNI:NTL01TT1198; match to protein family HMM PF03780 YP_360817.1 identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514 YP_360818.1 catalyzes the formation of oxaloacetate from pyruvate YP_360819.1 identified by similarity to OMNI:AF2004 YP_360820.1 identified by similarity to SP:P49784 YP_360822.1 identified by similarity to SP:P49782 YP_360823.1 identified by similarity to SP:P49781 YP_360824.1 identified by similarity to SP:P49780; match to protein family HMM PF06686 YP_360825.1 necessary for complete engulfment of forespore YP_360826.1 identified by similarity to SP:Q01367 YP_360828.1 identified by similarity to GB:AAO36135.1 YP_360829.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_360831.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455 YP_360832.1 identified by similarity to GB:AAN66759.1; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_360833.1 identified by similarity to GB:AAM25361.1 YP_360834.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_360835.1 identified by similarity to SP:P33780; match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_360836.1 identified by match to protein family HMM PF02625 YP_360838.1 identified by match to protein family HMM PF02040 YP_360839.1 identified by match to protein family HMM PF02040 YP_360840.1 identified by match to protein family HMM PF03747 YP_360841.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_360846.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_360847.1 identified by similarity to PIR:E72285; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF01966; match to protein family HMM TIGR00254; match to protein family HMM TIGR00277 YP_360848.1 identified by similarity to GB:AAM25312.1; match to protein family HMM PF01189; match to protein family HMM TIGR00446 YP_360849.1 identified by match to protein family HMM PF00440 YP_360850.1 identified by similarity to SP:P96797; similarity to GB:AAM07752.1; match to protein family HMM PF01565; match to protein family HMM PF02754 YP_360851.1 identified by similarity to PIR:G82445; match to protein family HMM PF07690 YP_360852.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813 YP_360853.1 identified by similarity to GB:BAC14399.1; match to protein family HMM PF04341 YP_360854.1 identified by similarity to PIR:F70480; match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445 YP_360855.1 identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573 YP_360856.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02754 YP_360857.1 identified by match to protein family HMM PF05103 YP_360858.1 identified by similarity to PIR:AC2167; match to protein family HMM PF01479 YP_360859.1 identified by similarity to GB:BAC08086.1; match to protein family HMM PF02325 YP_360860.1 identified by match to protein family HMM PF02153; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR00112 YP_360861.1 identified by similarity to GB:AAM24803.1; match to protein family HMM PF04472 YP_360862.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_360864.1 identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_360865.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_360866.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_360867.1 identified by similarity to GP:29897546; match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_360868.1 identified by similarity to GB:AAM23978.1; match to protein family HMM PF00753; match to protein family HMM PF07521 YP_360869.1 identified by similarity to SP:P39329; match to protein family HMM PF04055; match to protein family HMM TIGR02491 YP_360870.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_360871.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_360872.1 identified by match to protein family HMM PF05239 YP_360873.1 identified by similarity to SP:P39151 YP_360874.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin YP_360875.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation YP_360876.1 identified by similarity to SP:Q45832; match to protein family HMM PF03419 YP_360877.1 Selenoprotein. identified by similarity to SP:P16456; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476 YP_360879.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_360880.1 identified by similarity to SP:P28264; match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_360881.1 identified by similarity to SP:P28265; match to protein family HMM PF06947 YP_360882.1 identified by similarity to GB:AAM24844.1; match to protein family HMM PF05949 YP_360883.1 identified by match to protein family HMM PF05949 YP_360884.1 identified by similarity to PIR:D81201 YP_360885.1 identified by similarity to SP:P19670; match to protein family HMM PF00275; match to protein family HMM TIGR01072 YP_360886.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_360887.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01082 YP_360888.1 identified by match to protein family HMM PF03033; match to protein family HMM PF04101; match to protein family HMM TIGR01133 YP_360889.1 identified by similarity to SP:P07373; match to protein family HMM PF01098 YP_360890.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_360891.1 identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445 YP_360892.1 identified by similarity to SP:P96613; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_360893.1 identified by similarity to SP:Q03523; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085 YP_360894.1 identified by similarity to SP:Q07868; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214 YP_360897.1 identified by similarity to SP:Q8R9F9; match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_360898.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_360899.1 identified by match to protein family HMM PF03916 YP_360900.1 identified by similarity to OMNI:AF0175; match to protein family HMM PF00037 YP_360901.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409 YP_360902.1 identified by similarity to PIR:S77003 YP_360903.1 identified by similarity to SP:O34411; match to protein family HMM PF02811; match to protein family HMM TIGR01856 YP_360905.1 identified by similarity to PIR:H75399 YP_360906.1 identified by similarity to SP:P18273; match to protein family HMM PF03749; match to protein family HMM TIGR00230 YP_360907.1 identified by similarity to PIR:E83228; match to protein family HMM PF01734 YP_360908.1 identified by similarity to PIR:T17189; match to protein family HMM PF03358 YP_360909.1 identified by similarity to OMNI:NTL01TT2019; match to protein family HMM PF02698 YP_360910.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF01842; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199 YP_360912.1 identified by similarity to PIR:AC0237; match to protein family HMM PF02687 YP_360914.1 identified by match to protein family HMM PF00005 YP_360915.1 identified by match to protein family HMM PF02687 YP_360916.1 identified by similarity to GB:AAM24325.1 YP_360917.1 identified by similarity to PIR:C71037; match to protein family HMM PF03965 YP_360918.1 identified by similarity to SP:P54574; match to protein family HMM PF01475 YP_360919.1 identified by similarity to PIR:E70306 YP_360920.1 identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943 YP_360921.1 identified by similarity to GB:AAM07286.1; match to protein family HMM PF02641 YP_360922.1 identified by similarity to GB:AAP28982.1; match to protein family HMM PF02537; match to protein family HMM TIGR00494 YP_360923.1 identified by similarity to SP:Q97IQ4; match to protein family HMM PF02537 YP_360924.1 identified by similarity to GB:AAM25082.1; match to protein family HMM PF00350; match to protein family HMM PF01926 YP_360925.1 identified by similarity to OMNI:NTL01MM1452 YP_360926.1 identified by similarity to SP:P26235; match to protein family HMM PF00999 YP_360927.1 identified by match to protein family HMM PF04023 YP_360930.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_360935.1 identified by match to protein family HMM PF01935 YP_360937.1 identified by match to protein family HMM TIGR02619 YP_360938.1 identified by similarity to GB:CAD84026.1; match to protein family HMM TIGR02221; match to protein family HMM TIGR02549 YP_360941.1 identified by similarity to PIR:A72209 YP_360942.1 identified by similarity to GB:AAO77017.1 YP_360943.1 identified by similarity to GB:AAF34247.1 YP_360947.1 identified by match to protein family HMM PF01987; match to protein family HMM TIGR00266 YP_360950.1 identified by similarity to PIR:S74891 YP_360951.1 identified by similarity to GB:AAK02905.1 YP_360953.1 identified by match to protein family HMM PF01881; match to protein family HMM TIGR01877 YP_360954.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR01899 YP_360955.1 identified by match to protein family HMM TIGR01903 YP_360956.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR02582 YP_360957.1 identified by match to protein family HMM TIGR01870 YP_360958.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR02578 YP_360959.1 identified by similarity to SP:O29107 YP_360962.1 identified by similarity to GB:CAD25795.1 YP_360963.1 identified by similarity to SP:O06061 YP_360964.1 identified by similarity to SP:P45754 YP_360965.1 identified by match to protein family HMM PF02647; match to protein family HMM TIGR01573 YP_360966.1 identified by match to protein family HMM PF01867; match to protein family HMM TIGR00287 YP_360967.1 identified by match to protein family HMM PF01930; match to protein family HMM TIGR00372 YP_360968.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR01587; match to protein family HMM TIGR01596 YP_360969.1 identified by match to protein family HMM TIGR02592; match to protein family HMM TIGR02593 YP_360970.1 identified by match to protein family HMM PF05107; match to protein family HMM TIGR01595; match to protein family HMM TIGR02590 YP_360971.1 identified by match to protein family HMM TIGR02556; match to protein family HMM TIGR02591 YP_360972.1 identified by match to protein family HMM PF01881; match to protein family HMM TIGR01877 YP_360974.1 identified by similarity to GP:29896550 YP_360978.1 identified by match to protein family HMM PF00004 YP_360979.1 identified by similarity to SP:P43269; match to protein family HMM PF00565 YP_360981.1 identified by match to protein family HMM PF01610 YP_360983.1 identified by similarity to PIR:S76234 YP_360984.1 identified by similarity to OMNI:NTL02ST1907; match to protein family HMM PF00515; match to protein family HMM PF07719 YP_360990.1 identified by similarity to GP:29894794 YP_360993.1 identified by similarity to GB:AAO36301.1 YP_360994.1 identified by similarity to GB:AAK02119.1 YP_360995.1 identified by match to protein family HMM PF01909 YP_360997.1 identified by match to protein family HMM PF02687 YP_360998.1 identified by match to protein family HMM PF00005 YP_360999.1 identified by similarity to SP:P23478; match to protein family HMM PF00580 YP_361000.1 identified by similarity to SP:P23477 YP_361001.1 identified by similarity to GB:AAM01982.1; match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_361003.1 identified by match to protein family HMM PF00005 YP_361004.1 identified by similarity to GB:AAD29087.1; match to protein family HMM PF00005 YP_361005.1 identified by match to protein family HMM PF01032 YP_361006.1 identified by match to protein family HMM PF01497 YP_361007.1 identified by match to protein family HMM PF02663 YP_361008.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_361009.1 identified by similarity to GB:AAM24010.1 YP_361010.1 identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420 YP_361011.1 identified by match to protein family HMM PF01592 YP_361012.1 identified by similarity to SP:O54055; match to protein family HMM PF00266; match to protein family HMM PF01212 YP_361013.1 identified by similarity to GB:AAM24467.1; match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_361014.1 identified by similarity to GB:AAM24978.1; match to protein family HMM PF00004 YP_361015.1 identified by similarity to SP:P00274; match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_361016.1 identified by similarity to SP:Q46927; match to protein family HMM PF00899 YP_361017.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_361018.1 identified by similarity to SP:O32422; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442 YP_361021.1 identified by similarity to SP:Q06916; match to protein family HMM PF02535 YP_361022.1 identified by similarity to GB:AAM24970.1; match to protein family HMM PF04055 YP_361023.1 identified by similarity to GB:AAM24969.1 YP_361024.1 identified by similarity to GP:15281347; match to protein family HMM PF04556 YP_361025.1 identified by match to protein family HMM PF01170; match to protein family HMM PF01555 YP_361026.1 identified by similarity to SP:P34720; match to protein family HMM PF02086; match to protein family HMM TIGR00571 YP_361027.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_361028.1 identified by match to protein family HMM PF03547 YP_361029.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887 YP_361030.1 identified by similarity to SP:P94532; match to protein family HMM PF02554 YP_361031.1 identified by similarity to SP:P77742; match to protein family HMM PF00072; match to protein family HMM PF04397 YP_361032.1 identified by similarity to SP:P33357; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694 YP_361033.1 identified by similarity to SP:P00270 YP_361034.1 identified by match to protein family HMM PF00753 YP_361035.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_361036.1 identified by similarity to SP:O54408; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_361037.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_361038.1 identified by match to protein family HMM PF04474 YP_361039.1 identified by match to protein family HMM PF00892 YP_361040.1 identified by match to protein family HMM PF02811 YP_361041.1 identified by similarity to SP:P22731; match to protein family HMM PF00005 YP_361042.1 identified by similarity to SP:P22730; match to protein family HMM PF00005 YP_361043.1 identified by match to protein family HMM PF02653 YP_361044.1 identified by similarity to SP:P08340; match to protein family HMM PF02653 YP_361046.1 identified by similarity to GB:CAE08028.1 YP_361047.1 identified by similarity to SP:P02917; match to protein family HMM PF01094 YP_361048.1 identified by match to protein family HMM PF02687 YP_361049.1 identified by match to protein family HMM PF00005 YP_361050.1 identified by match to protein family HMM TIGR01730 YP_361051.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766 YP_361059.1 identified by match to protein family HMM PF07853 YP_361060.1 identified by similarity to PIR:G72417; match to protein family HMM PF02915 YP_361062.1 identified by match to protein family HMM PF03956 YP_361063.1 identified by similarity to GB:AAC24330.1; match to protein family HMM PF00378 YP_361068.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838 YP_361069.1 catalyzes ATP + L-citrulline + L-aspartate = AMP + diphosphate + (N(omega)-L-arginino)succinate YP_361070.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658 YP_361071.1 identified by similarity to SP:P54752; match to protein family HMM PF00202; match to protein family HMM TIGR00707 YP_361072.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761 YP_361073.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_361074.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01850 YP_361075.1 identified by match to protein family HMM PF07690 YP_361076.1 identified by match to protein family HMM PF04055 YP_361077.1 identified by similarity to SP:Q05353; match to protein family HMM PF01871; match to protein family HMM PF02900; match to protein family HMM TIGR00296 YP_361079.1 identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733 YP_361080.1 identified by similarity to SP:P50864; match to protein family HMM PF01520 YP_361081.1 identified by similarity to SP:Q45538; match to protein family HMM PF02915 YP_361082.1 identified by similarity to SP:P02363; match to protein family HMM PF00380 YP_361083.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_361084.1 identified by match to protein family HMM PF01699 YP_361085.1 identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071 YP_361086.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454 YP_361087.1 identified by similarity to GB:AAP07241.1; match to protein family HMM PF00005 YP_361088.1 identified by match to protein family HMM PF00005 YP_361089.1 identified by similarity to SP:P07843; match to protein family HMM PF01196; match to protein family HMM TIGR00059 YP_361090.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_361091.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_361092.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_361093.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_361094.1 identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022 YP_361095.1 identified by similarity to SP:P20458; match to protein family HMM PF00575; match to protein family HMM TIGR00008 YP_361097.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_361098.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_361099.1 late assembly protein YP_361100.1 identified by similarity to SP:Q9Z9J6; match to protein family HMM PF00327; match to protein family HMM TIGR01308 YP_361101.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_361102.1 binds 5S rRNA along with protein L5 and L25 YP_361103.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_361104.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_361105.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_361106.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_361107.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_361108.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_361109.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_361110.1 identified by similarity to SP:P04457; match to protein family HMM PF00831; match to protein family HMM TIGR00012 YP_361111.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_361112.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_361113.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_361114.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_361115.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_361116.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_361117.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_361118.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_361119.1 identified by similarity to SP:P21471; match to protein family HMM PF00338; match to protein family HMM TIGR01049 YP_361121.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_361122.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_361123.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_361124.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_361125.1 identified by match to protein family HMM PF01248 YP_361126.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_361127.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_361129.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_361130.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_361131.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_361132.1 binds directly to 23S ribosomal RNA YP_361133.1 identified by similarity to SP:Q06795; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922 YP_361134.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_361135.1 identified by similarity to SP:Q06798; match to protein family HMM PF00471; match to protein family HMM TIGR01023 YP_361136.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_361138.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_361139.1 identified by similarity to PIR:G97287; match to protein family HMM PF05991 YP_361140.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_361141.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_361142.1 identified by similarity to GB:AAO37072.1; match to protein family HMM PF00636 YP_361143.1 identified by similarity to SP:Q06752; match to protein family HMM PF01406; match to protein family HMM TIGR00435 YP_361144.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_361145.1 identified by similarity to SP:P22250; match to protein family HMM PF00749; match to protein family HMM TIGR00464 YP_361146.1 identified by similarity to SP:P36663; match to protein family HMM PF02542; match to protein family HMM TIGR00151 YP_361147.1 identified by match to protein family HMM PF01128; match to protein family HMM TIGR00453 YP_361148.1 identified by similarity to GB:AAO37077.1; match to protein family HMM PF01850; match to protein family HMM PF01938 YP_361149.1 identified by match to protein family HMM PF02559 YP_361150.1 identified by similarity to OMNI:NTL01TT2148 YP_361151.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_361152.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_361153.1 identified by similarity to SP:P37571; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_361154.1 identified by match to protein family HMM PF00217 YP_361155.1 identified by match to protein family HMM PF02151 YP_361156.1 identified by similarity to GP:7800894; match to protein family HMM PF05848 YP_361158.1 identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_361159.1 identified by similarity to SP:P24136; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_361160.1 identified by similarity to SP:P26904; match to protein family HMM PF00528 YP_361161.1 identified by similarity to SP:P24138; match to protein family HMM PF00528 YP_361162.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_361163.1 identified by similarity to SP:P80240; match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462 YP_361164.1 identified by similarity to GB:AAM25513.1; match to protein family HMM PF01488 YP_361165.1 identified by similarity to GB:AAM25515.1 YP_361166.1 identified by similarity to GB:AAM23636.1; match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_361167.1 identified by match to protein family HMM PF03309; match to protein family HMM TIGR00671 YP_361168.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121 YP_361169.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 YP_361170.1 identified by similarity to SP:P38032; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM TIGR00551 YP_361171.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_361172.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_361173.1 identified by similarity to SP:P52998; match to protein family HMM PF02569; match to protein family HMM TIGR00018; match to protein family HMM TIGR00125 YP_361174.1 identified by match to protein family HMM PF02548; match to protein family HMM TIGR00222 YP_361175.1 identified by similarity to GB:AAO81619.1; match to protein family HMM PF01210; match to protein family HMM PF03807 YP_361178.1 identified by similarity to SP:P29252; match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_361179.1 identified by similarity to SP:P28823; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526 YP_361180.1 identified by similarity to SP:P28822; match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_361181.1 identified by similarity to PIR:H97259; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_361182.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_361183.1 identified by match to protein family HMM PF03061 YP_361185.1 identified by similarity to GP:11065684 YP_361186.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_361187.1 identified by match to protein family HMM PF00085 YP_361188.1 identified by similarity to GP:2274933 YP_361189.1 GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin YP_361190.1 Selenoprotein. identified by similarity to SP:P52217; match to protein family HMM PF07355; match to protein family HMM TIGR01917; match to protein family HMM TIGR01918 YP_361191.1 identified by similarity to SP:P54935 YP_361192.1 identified by similarity to GP:2708734; match to protein family HMM PF02504 YP_361194.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04015 YP_361195.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_361196.1 identified by similarity to SP:P29946; match to protein family HMM PF01656; match to protein family HMM PF07685; match to protein family HMM TIGR00379 YP_361197.1 identified by match to protein family HMM PF03601 YP_361198.1 identified by similarity to PIR:C70383 YP_361199.1 identified by similarity to SP:P45573; match to protein family HMM PF04358 YP_361200.1 identified by similarity to SP:P96797; match to protein family HMM PF00037; match to protein family HMM PF02754 YP_361202.1 identified by similarity to SP:P08813; match to protein family HMM PF00037 YP_361203.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_361204.1 identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469 YP_361205.1 identified by similarity to GP:13560123 YP_361206.1 identified by similarity to GP:902748; match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02066 YP_361207.1 identified by similarity to GP:902747; match to protein family HMM PF01077; match to protein family HMM TIGR02064 YP_361208.1 identified by similarity to SP:P29212; match to protein family HMM PF00501 YP_361210.1 identified by similarity to PIR:B83975; match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_361211.1 identified by match to protein family HMM PF03239 YP_361213.1 identified by match to protein family HMM PF00011 YP_361214.1 identified by similarity to SP:P52067; match to protein family HMM PF07690 YP_361215.1 identified by similarity to GB:AAP09820.1; match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_361216.1 identified by match to protein family HMM PF00011 YP_361217.1 identified by match to protein family HMM PF03180 YP_361218.1 identified by match to protein family HMM PF00528 YP_361219.1 identified by similarity to SP:P30750; match to protein family HMM PF00005 YP_361220.1 identified by similarity to GB:AAM25541.1 YP_361221.1 identified by match to protein family HMM PF00005 YP_361222.1 identified by similarity to GB:AAM25539.1 YP_361223.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis has been shown to regulate cell envelope modification and may effect antibiotic resistance YP_361225.1 identified by similarity to PIR:B72392 YP_361226.1 identified by similarity to GB:AAM04743.1 YP_361227.1 identified by similarity to GB:AAM23558.1; match to protein family HMM PF01699 YP_361230.1 identified by similarity to GB:AAO35621.1 YP_361231.1 identified by match to protein family HMM PF00037 YP_361234.1 identified by match to protein family HMM PF01743; match to protein family HMM PF01966 YP_361235.1 identified by similarity to GB:AAO08161.1; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_361236.1 identified by similarity to SP:P23886; match to protein family HMM PF00005 YP_361237.1 identified by similarity to SP:P29018; match to protein family HMM PF00005; match to protein family HMM PF00664 YP_361238.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_361239.1 identified by similarity to SP:P11026; match to protein family HMM PF01654 YP_361240.1 identified by similarity to GB:AAO35192.1; match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_361241.1 identified by similarity to SP:Q9PG89; match to protein family HMM PF02646 YP_361242.1 catalyzes the formation of biotin from dethiobiotin and sulfur YP_361243.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_361244.1 identified by match to protein family HMM PF03746 YP_361245.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370 YP_361249.1 identified by match to protein family HMM PF00753 YP_361250.1 identified by similarity to SP:O06005; match to protein family HMM PF00324 YP_361251.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_361252.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_361253.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_361254.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_361255.1 identified by similarity to GB:CAD63129.1 YP_361258.1 identified by match to protein family HMM PF00037 YP_361259.1 identified by similarity to PIR:AB2284; match to protein family HMM PF01972 YP_361261.1 identified by similarity to PIR:A72309; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_361262.1 identified by similarity to PIR:G72311; match to protein family HMM PF04536 YP_361263.1 identified by similarity to PIR:F72311; match to protein family HMM PF04011 YP_361264.1 identified by match to protein family HMM PF01925 YP_361266.1 identified by match to protein family HMM PF04657 YP_361267.1 identified by similarity to SP:P23261; match to protein family HMM PF07875 YP_361268.1 identified by similarity to GB:AAM25374.1 YP_361269.1 identified by similarity to GP:19881355 YP_361270.1 identified by similarity to SP:P31575; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_361271.1 identified by similarity to SP:P53578; match to protein family HMM PF00766; match to protein family HMM PF01012 YP_361272.1 identified by similarity to SP:P53577; match to protein family HMM PF01012 YP_361273.1 identified by similarity to GB:AAD43134.1; match to protein family HMM PF04055; match to protein family HMM TIGR00238 YP_361275.1 identified by similarity to SP:P39852; match to protein family HMM PF02811 YP_361276.1 identified by match to protein family HMM PF01909 YP_361277.1 identified by similarity to OMNI:NTL01TT0656 YP_361278.1 identified by similarity to PIR:S76377; match to protein family HMM PF05685 YP_361279.1 identified by similarity to SP:Q02114; match to protein family HMM PF01520 YP_361280.1 identified by match to protein family HMM PF01841 YP_361282.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_361283.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_361284.1 identified by similarity to PIR:G72593 YP_361285.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00801 YP_361286.1 identified by similarity to PIR:B97342; match to protein family HMM PF01966 YP_361287.1 identified by similarity to OMNI:NTL01AA00825; match to protein family HMM PF05685 YP_361288.1 identified by similarity to SP:Q58700 YP_361289.1 identified by match to protein family HMM PF01909 YP_361290.1 identified by similarity to GB:BAB62465.1; match to protein family HMM PF07927 YP_361291.1 identified by similarity to PIR:T13557; match to protein family HMM PF03681 YP_361296.1 identified by similarity to GP:2244973 YP_361297.1 identified by match to protein family HMM TIGR00305 YP_361300.1 Although this ORF is not disrupted, an ISChy2 element is inserted upstream within the left end-sequences.; identified by match to protein family HMM PF00665 YP_361301.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_361303.1 identified by similarity to PIR:T13557; match to protein family HMM PF03681 YP_361305.1 identified by similarity to GB:AAO90189.1; match to protein family HMM TIGR01552 YP_361306.1 identified by similarity to PIR:H59093 YP_361307.1 identified by similarity to PIR:B70403; match to protein family HMM PF05685 YP_361309.1 identified by match to protein family HMM PF01841 YP_361310.1 identified by similarity to GB:AAC98137.1 YP_361311.1 identified by match to protein family HMM PF00665 YP_361312.1 identified by similarity to SP:P45754 YP_361321.1 identified by match to protein family HMM PF02369 YP_361325.1 identified by similarity to SP:Q58324; match to protein family HMM PF01850 YP_361326.1 identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904 YP_361327.1 identified by similarity to SP:P15281 YP_361328.1 identified by similarity to SP:Q57591; match to protein family HMM PF01934 YP_361329.1 identified by match to protein family HMM PF01909 YP_361332.1 identified by similarity to GB:AAM25727.1; match to protein family HMM PF01850; match to protein family HMM TIGR00305 YP_361333.1 identified by similarity to GB:AAM25728.1; match to protein family HMM PF02604; match to protein family HMM TIGR01552 YP_361334.1 identified by similarity to SP:P07372; match to protein family HMM TIGR02669 YP_361335.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_361337.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_361338.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_361339.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_361340.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_361341.1 identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145 YP_361342.1 identified by match to protein family HMM PF00430; match to protein family HMM TIGR01144 YP_361343.1 identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260 YP_361344.1 identified by match to protein family HMM PF00119; match to protein family HMM TIGR01131 YP_361346.1 identified by similarity to PIR:B84120 YP_361347.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_361349.1 identified by match to protein family HMM PF00383 YP_361350.1 identified by similarity to SP:P39148; match to protein family HMM PF00155; match to protein family HMM PF00202; match to protein family HMM PF00464; match to protein family HMM PF01212; match to protein family HMM PF01276 YP_361351.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_361352.1 identified by match to protein family HMM PF01451 YP_361353.1 identified by match to protein family HMM PF02659 YP_361354.1 identified by similarity to GB:AAM23449.1; match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_361355.1 identified by similarity to GB:AAK64442.1; match to protein family HMM PF05175; match to protein family HMM TIGR00536 YP_361356.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_361357.1 identified by match to protein family HMM PF07136 YP_361358.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_361359.1 identified by similarity to GB:AAM25603.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_361360.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_361361.1 identified by similarity to GB:AAM24033.1 YP_361362.1 identified by similarity to SP:Q02114; match to protein family HMM PF01520 YP_361363.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411 YP_361365.1 identified by match to protein family HMM PF03916 YP_361366.1 identified by match to protein family HMM PF00037 YP_361367.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409 YP_361368.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_361369.1 identified by similarity to SP:P31064; match to protein family HMM PF04143 YP_361370.1 identified by similarity to SP:Q9X078; match to protein family HMM PF01206 YP_361371.1 identified by similarity to GB:AAO35748.1; match to protein family HMM PF04143 YP_361373.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_361374.1 identified by similarity to PIR:E97087; match to protein family HMM PF04239 YP_361375.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_361376.1 identified by similarity to SP:P72010; match to protein family HMM PF01761 YP_361377.1 identified by match to protein family HMM PF00483 YP_361378.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_361380.1 identified by match to protein family HMM PF04464 YP_361381.1 identified by similarity to SP:O34753; match to protein family HMM PF00953 YP_361382.1 identified by similarity to SP:P32205; match to protein family HMM PF07977; match to protein family HMM TIGR01750 YP_361383.1 identified by match to protein family HMM PF01522 YP_361384.1 identified by similarity to SP:Q02115; match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_361385.1 identified by similarity to OMNI:NTL03CP1354 YP_361387.1 identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383 YP_361388.1 identified by match to protein family HMM PF00301 YP_361389.1 identified by similarity to SP:P42433; match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF07992 YP_361390.1 identified by similarity to SP:P00267; match to protein family HMM PF00301 YP_361391.1 identified by match to protein family HMM PF02915 YP_361392.1 identified by similarity to GB:AAO34924.1; match to protein family HMM PF01476 YP_361393.1 identified by match to protein family HMM PF00188 YP_361396.1 identified by similarity to SP:Q9JWQ5 YP_361397.1 identified by similarity to OMNI:NTL01TT2063; match to protein family HMM PF02915 YP_361401.1 identified by match to protein family HMM PF00535 YP_361402.1 identified by match to protein family HMM PF00535 YP_361408.1 identified by similarity to GB:AAM24013.1; match to protein family HMM PF04308 YP_361409.1 identified by similarity to SP:P37468; match to protein family HMM PF00398; match to protein family HMM TIGR00755 YP_361410.1 identified by similarity to GB:AAM23416.1; match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501 YP_361412.1 identified by similarity to SP:P13040; match to protein family HMM PF02572; match to protein family HMM TIGR00708 YP_361413.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_361414.1 identified by similarity to SP:P23920; match to protein family HMM PF00133; match to protein family HMM PF01406; match to protein family HMM PF01588; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399 YP_361415.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_361417.1 identified by match to protein family HMM PF07719 YP_361418.1 identified by match to protein family HMM PF01551 YP_361420.1 identified by match to protein family HMM PF04055 YP_361422.1 identified by similarity to PIR:C71168 YP_361431.1 identified by similarity to GB:AAM25258.1 YP_361432.1 identified by similarity to SP:P05096; match to protein family HMM PF01751 YP_361433.1 This is one of three genes centered around a predicted transposase gene. There are two copies of the ISChy3 element in this genome. YP_361434.1 identified by similarity to SP:P18416; match to protein family HMM PF00665 YP_361435.1 This is one of three genes centered around a predicted transposase gene. There are two copies of the ISChy3 element in this genome. YP_361436.1 identified by similarity to GB:BAC18734.1 YP_361443.1 identified by similarity to OMNI:NTL02MA2298; match to protein family HMM TIGR02653 YP_361444.1 identified by similarity to OMNI:NTL02MA2299 YP_361445.1 identified by similarity to SP:P25239 YP_361446.1 identified by similarity to GB:AAM05760.1 YP_361447.1 identified by similarity to GB:AAM05761.1 YP_361448.1 identified by similarity to GB:AAL23316.1 YP_361452.1 identified by similarity to OMNI:NTL01MT00334 YP_361456.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_361457.1 identified by similarity to OMNI:NTL01MK0527 YP_361458.1 identified by similarity to SP:P28821; match to protein family HMM PF01063 YP_361459.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_361460.1 identified by similarity to GB:AAM25816.1; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_361461.1 identified by similarity to SP:P24282 YP_361462.1 identified by match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615 YP_361463.1 identified by similarity to SP:P24281; match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_361464.1 identified by similarity to SP:P09122; match to protein family HMM PF00004; match to protein family HMM TIGR02397 YP_361465.1 identified by similarity to GB:AAP27678.1; match to protein family HMM PF04456 YP_361466.1 identified by similarity to SP:P54942 YP_361467.1 identified by similarity to SP:P40881; match to protein family HMM PF00132 YP_361468.1 identified by similarity to SP:P30134; match to protein family HMM PF00383 YP_361469.1 identified by similarity to PIR:T44655; match to protein family HMM PF01053 YP_361470.1 identified by similarity to SP:O29697 YP_361471.1 identified by similarity to SP:P26476; match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460 YP_361472.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237 YP_361473.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683 YP_361474.1 identified by similarity to SP:O66036; match to protein family HMM PF01747; match to protein family HMM TIGR00339 YP_361475.1 identified by similarity to GP:443816; match to protein family HMM PF00037 YP_361476.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite YP_361477.1 identified by match to protein family HMM PF01925 YP_361478.1 identified by similarity to GP:28270951; match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_361479.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_361480.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_361481.1 identified by similarity to SP:P16421; match to protein family HMM PF00266; match to protein family HMM PF01053; match to protein family HMM PF01212 YP_361484.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_361485.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_361486.1 identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 YP_361487.1 identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059 YP_361488.1 identified by similarity to GB:BAB79711.1 YP_361489.1 identified by similarity to SP:P29232; match to protein family HMM PF02463; match to protein family HMM TIGR00611 YP_361490.1 identified by similarity to PIR:C96900; match to protein family HMM PF01479 YP_361491.1 identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663 YP_361492.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.