-- dump date 20140619_030022 -- class Genbank::CDS -- table cds_note -- id note YP_003110797.1 KEGG: fra:Francci3_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: replication initiation factor DnaA; ATPase AAA YP_003110798.1 binds the polymerase to DNA and acts as a sliding clamp YP_003110799.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_003110800.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: sma:SAV_4319 recombination protein F YP_003110801.1 PFAM: protein of unknown function DUF721; KEGG: sgr:SGR_3704 hypothetical protein YP_003110802.1 negatively supercoils closed circular double-stranded DNA YP_003110803.1 negatively supercoils closed circular double-stranded DNA YP_003110804.1 KEGG: sma:SAV_4323 hypothetical protein YP_003110805.1 KEGG: rlt:Rleg2_4895 hypothetical protein YP_003110806.1 PFAM: Curculin domain protein (mannose-binding) lectin; SMART: Curculin domain protein (mannose-binding) lectin; KEGG: pfl:PFL_2127 putidacin L1 YP_003110807.1 PFAM: UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: saq:Sare_0152 GntR family transcriptional regulator YP_003110810.1 PFAM: ATP-binding region ATPase domain protein; KEGG: tfu:Tfu_2295 hypothetical protein YP_003110811.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003110812.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: sgr:SGR_3958 serine protease YP_003110813.1 KEGG: sgr:SGR_419 hypothetical protein YP_003110815.1 KEGG: tfu:Tfu_2295 hypothetical protein YP_003110816.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: nfa:nfa38930 DNA-binding protein YP_003110817.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: fal:FRAAL6347 regulatory protein YP_003110818.1 PFAM: protein of unknown function UPF0016; KEGG: sco:SCO2347 integral membrane protein YP_003110819.1 PFAM: TetR family transcriptional regulator; KEGG: stp:Strop_2766 regulatory protein, TetR YP_003110820.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO5516 integral membrane efflux protein YP_003110821.1 PFAM: NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: kpn:KPN_04605 oxidoreductase YP_003110822.1 PFAM: helix-turn-helix HxlR type; KEGG: sma:SAV_2662 transcriptional regulator YP_003110823.1 KEGG: sma:SAV_994 conventional protein tyrosine phosphatase YP_003110824.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rle:RL2084 acetyltransferase YP_003110825.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: mjl:Mjls_3025 lysine exporter protein LysE/YggA YP_003110826.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fre:Franean1_0089 ECF subfamily RNA polymerase sigma-24 factor YP_003110827.1 KEGG: sgr:SGR_5473 integral membrane protein YP_003110828.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rpc:RPC_2940 methyltransferase type 11 YP_003110829.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: sco:SCO3843 hypothetical protein YP_003110830.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: sgr:SGR_3729 hypothetical protein YP_003110831.1 PFAM: protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: sgr:SGR_3728 protein phosphatase YP_003110832.1 PFAM: cell cycle protein; KEGG: sgr:SGR_3727 FtsW/RodA/SpoVE family cell cycle protein YP_003110833.1 PFAM: penicillin-binding protein transpeptidase; KEGG: sma:SAV_4339 penicillin-binding protein YP_003110834.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sgr:SGR_3725 serine/threonine protein kinase YP_003110835.1 aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity YP_003110836.1 KEGG: sco:SCO3852 hypothetical protein YP_003110837.1 TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: kra:Krad_0027 sortase family protein YP_003110838.1 PFAM: protein of unknown function DUF881; KEGG: sgr:SGR_3719 hypothetical protein YP_003110839.1 integral membrane protein involved in inhibition of the Z-ring formation YP_003110840.1 PFAM: rhomboid family protein; KEGG: ace:Acel_0013 rhomboid family protein YP_003110841.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: krh:KRH_00110 peptidyl-prolyl cis-trans isomerase YP_003110842.1 KEGG: CG31952 YP_003110843.1 KEGG: sco:SCO3551 membrane spanning protein YP_003110844.1 KEGG: sgr:SGR_3310 hypothetical protein YP_003110845.1 KEGG: ace:Acel_1979 hypothetical protein YP_003110846.1 PFAM: type II secretion system protein; KEGG: sgr:SGR_3318 hypothetical protein YP_003110847.1 KEGG: sco:SCO3555 integral membrane protein YP_003110848.1 PFAM: type II secretion system protein E; KEGG: sco:SCO3556 secretory protein YP_003110849.1 KEGG: tfu:Tfu_0129 septum site determining protein YP_003110850.1 TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase- like); PFAM: haloacid dehalogenase; KEGG: sma:SAV_4604 morphological differentiation- associated protein YP_003110851.1 PFAM: TrkA-N domain protein; ion transport 2 domain protein; KEGG: sma:SAV_4367 hypothetical protein YP_003110852.1 PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: sco:SCO3827 molybdenum cofactor biosynthesis protein YP_003110853.1 KEGG: sma:SAV_4365 molybdopterin-guanine dinucleotide biosynthesis protein YP_003110854.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sgr:SGR_6775 acyl-CoA dehydrogenase YP_003110855.1 KEGG: msm:MSMEG_5992 hypothetical protein YP_003110856.1 PFAM: protein of unknown function DUF35; KEGG: mpa:MAP2587 hypothetical protein YP_003110857.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: sgr:SGR_3736 acyl-CoA dehydrogenase YP_003110858.1 PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro05828 hypothetical protein YP_003110859.1 KEGG: nfa:nfa4530 lipid-transfer protein YP_003110860.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: sma:SAV_7535 hydrolase YP_003110861.1 PFAM: TipAS antibiotic-recognition domain protein; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sgr:SGR_941 MerR family transcriptional regulator YP_003110862.1 TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; sodium/hydrogen exchanger; KEGG: sgr:SGR_3327 sodium/proton antiporter YP_003110863.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sgr:SGR_3326 acetyl-CoA synthetase YP_003110864.1 PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: stp:Strop_4494 LytTr DNA-binding region YP_003110865.1 PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: nca:Noca_0358 histidine kinase internal region YP_003110866.1 PFAM: TetR family transcriptional regulator; KEGG: nca:Noca_1231 TetR family transcriptional regulator YP_003110867.1 KEGG: nca:Noca_1230 hypothetical protein YP_003110868.1 KEGG: sgr:SGR_3324 hypothetical protein YP_003110869.1 KEGG: sma:SAV_4603 hypothetical protein YP_003110870.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ank:AnaeK_2958 short-chain dehydrogenase/reductase SDR YP_003110871.1 PFAM: TetR family transcriptional regulator; KEGG: fal:FRAAL3321 2,4-DAPG biosynthesis transcriptional repressor PhlF YP_003110872.1 TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sco:SCO3823 quinone oxidoreductase YP_003110873.1 KEGG: sgr:SGR_3755 hypothetical protein YP_003110874.1 PFAM: aminoglycoside phosphotransferase; KEGG: sgr:SGR_3762 hypothetical protein YP_003110875.1 PFAM: esterase; KEGG: ace:Acel_0767 esterase YP_003110876.1 KEGG: sgr:SGR_3019 hypothetical protein YP_003110877.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_003110878.1 PFAM: GrpE protein; KEGG: sma:SAV_4485 heat shock protein GrpE YP_003110879.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_003110880.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sma:SAV_4487 HspR protein YP_003110881.1 KEGG: tfu:Tfu_0200 ATPase; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; ATPase AAA central domain protein; ATPase AAA; Clp domain protein; SMART: ATPase AAA YP_003110882.1 KEGG: sgr:SGR_6214 hypothetical protein YP_003110883.1 KEGG: sco:SCO1348 hypothetical protein YP_003110884.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tfu:Tfu_1700 short chain dehydrogenase YP_003110885.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function RIO1; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: fre:Franean1_5221 serine/threonine protein kinase YP_003110886.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sma:SAV_4383 hydrolase YP_003110887.1 PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; KEGG: sco:SCO3815 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_003110888.1 PFAM: transketolase; transketolase domain protein; KEGG: sco:SCO3816 branched-chain alpha keto acid dehydrogenase E1 subunit beta YP_003110889.1 KEGG: sgr:SGR_3765 branched-chain alpha keto acid dehydrogenase E1 subunit alpha; TIGRFAM: pyruvate dehydrogenase (acetyl- transferring) E1 component, subunit alpha; PFAM: dehydrogenase E1 component YP_003110890.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: ace:Acel_0518 two component LuxR family transcriptional regulator YP_003110891.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO1339 hypothetical protein YP_003110892.1 PFAM: monooxygenase FAD-binding; KEGG: sco:SCO1338 monooxygenase (secreted protein) YP_003110893.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: ace:Acel_2105 prephenate dehydratase YP_003110894.1 KEGG: sma:SAV_4347 hypothetical protein YP_003110895.1 PFAM: LamB/YcsF family protein; KEGG: fal:FRAAL4906 hypothetical protein YP_003110896.1 PFAM: allophanate hydrolase subunit 2; allophanate hydrolase subunit 1; SMART: allophanate hydrolase subunit 2; allophanate hydrolase subunit 1; KEGG: aau:AAur_0053 UreA carboxylase/allophanate hydrolase domain-containing protein YP_003110897.1 KEGG: stp:Strop_1435 hypothetical protein YP_003110898.1 KEGG: nfa:nfa32830 hypothetical protein YP_003110899.1 PFAM: Forkhead-associated protein; protein of unknown function DUF1707; SMART: Forkhead-associated protein; KEGG: sma:SAV_2158 hypothetical protein YP_003110900.1 PFAM: proteinase inhibitor I4 serpin; SMART: proteinase inhibitor I4 serpin; KEGG: scl:sce4096 secreted serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member YP_003110901.1 KEGG: rha:RHA1_ro03411 hypothetical protein YP_003110902.1 PFAM: nitroreductase; KEGG: fre:Franean1_3917 nitroreductase YP_003110903.1 KEGG: sgr:SGR_4289 hypothetical protein YP_003110904.1 TIGRFAM: regulatory protein, FmdB family; KEGG: sco:SCO3187 hypothetical protein YP_003110905.1 KEGG: tfu:Tfu_0250 PAS containing protein phosphatase 2C-like; TIGRFAM: PAS sensor protein; PFAM: stage II sporulation E family protein; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; PAS domain containing protein YP_003110906.1 TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sco:SCO3183 hypothetical protein YP_003110907.1 KEGG: ace:Acel_0165 diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003110908.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; KEGG: sma:SAV_3673 UTP:glucose-1-phosphate uridylyltransferase YP_003110909.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: ace:Acel_0167 molybdopterin molybdochelatase YP_003110910.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: sma:SAV_3671 molybdenum cofactor biosynthesis protein C YP_003110911.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro10371 major facilitator superfamily multidrug resistance protein YP_003110912.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: mxa:MXAN_3480 iron-sulfur cluster-binding protein, Rieske family YP_003110913.1 KEGG: tfu:Tfu_0410 hypothetical protein YP_003110914.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sco:SCO3133 MarR family regulatory protein YP_003110915.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sco:SCO3132 trans-aconitate methyltransferase YP_003110916.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: stp:Strop_4178 hypothetical protein YP_003110917.1 PFAM: protein of unknown function DUF1003; KEGG: mab:MAB_1523c hypothetical protein YP_003110918.1 PFAM: MgtE intracellular region; CBS domain containing protein; KEGG: ace:Acel_1818 MgtE intracellular region YP_003110919.1 KEGG: sma:SAV_3109 lipoprotein YP_003110921.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fre:Franean1_0089 ECF subfamily RNA polymerase sigma-24 factor YP_003110922.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: aau:AAur_0159 type I phosphodiesterase / nucleotide pyrophosphatase family protein YP_003110923.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sma:SAV_2089 2-hydroxyacid dehydrogenase YP_003110924.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_1453 transmembrane lipoprotein LplB YP_003110925.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_1454 transmembrane lipoprotein LplC YP_003110926.1 PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_1455 lipoprotein precursor LplA YP_003110927.1 KEGG: rlt:Rleg2_5337 heparinase II/III family protein YP_003110928.1 KEGG: sma:SAV_2106 hypothetical protein YP_003110929.1 PFAM: xylose isomerase; KEGG: sma:SAV_5310 hypothetical protein YP_003110930.1 KEGG: rsa:RSal33209_0109 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003110931.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sco:SCO6193 transcriptional regulator YP_003110932.1 PFAM: Ig family protein; KEGG: sma:SAV_5630 neutral zinc metalloprotease YP_003110933.1 PFAM: xylose isomerase; KEGG: tfu:Tfu_1719 hypothetical protein YP_003110935.1 KEGG: sco:SCO2751 hypothetical protein YP_003110936.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: sgr:SGR_4813 oxidoreductase YP_003110937.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: tfu:Tfu_1710 LacI family transcription regulator YP_003110938.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sgr:SGR_4335 integral membrane protein YP_003110939.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sco:SCO5749 two-component regulator YP_003110940.1 KEGG: sgr:SGR_1773 two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein YP_003110941.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sgr:SGR_1774 hypothetical protein YP_003110943.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_7161 RNA polymerase ECF sigma factor YP_003110944.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: nca:Noca_4538 cyclopropane-fatty-acyl- phospholipid synthase YP_003110945.1 KEGG: sgr:SGR_2642 hypothetical protein YP_003110946.1 PFAM: protein of unknown function UPF0150; KEGG: blj:BLD_1980 hypothetical protein YP_003110947.1 PFAM: YcfA family protein; KEGG: mar:MAE_55720 hypothetical protein YP_003110948.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: fal:FRAAL6227 NADH dehydrogenase YP_003110949.1 PFAM: Ppx/GppA phosphatase; KEGG: sma:SAV_3530 exopolyphosphatase YP_003110950.1 PFAM: protein of unknown function DUF501; KEGG: sco:SCO3094 hypothetical protein YP_003110951.1 KEGG: sen:SACE_1821 hypothetical protein YP_003110952.1 PFAM: multicopper oxidase type 2; multicopper oxidase type 3; multicopper oxidase type 1; KEGG: sen:SACE_1822 spore coat protein (outer) YP_003110953.1 PFAM: GAF domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: GAF domain protein; KEGG: sma:SAV_4257 two-component system sensor kinase YP_003110954.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: sma:SAV_4261 aminotransferase YP_003110955.1 KEGG: sen:SACE_5011 hypothetical protein YP_003110956.1 PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bmj:BMULJ_02621 AraC subfamily transcriptional regulator YP_003110957.1 PFAM: ThiJ/PfpI domain protein; KEGG: sco:SCO6747 hypothetical protein YP_003110958.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sen:SACE_3371 3-oxoacyl-[acyl-carrier- protein] reductase YP_003110959.1 PFAM: carboxyl transferase; KEGG: mjl:Mjls_4686 propionyl-CoA carboxylase YP_003110960.1 PFAM: carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: mgi:Mflv_4614 carbamoyl-phosphate synthase L chain, ATP-binding YP_003110961.1 KEGG: mav:MAV_3523 acyl-CoA synthase YP_003110962.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_4377 TetR family transcriptional regulator YP_003110963.1 PFAM: fatty acid desaturase; KEGG: sgr:SGR_4378 fatty acid desaturase YP_003110964.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: sco:SCO3122 nucleotidyltransferase YP_003110965.1 KEGG: sgr:SGR_4383 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003110966.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: tfu:Tfu_0416 50S ribosomal protein L25/general stress protein Ctc YP_003110967.1 KEGG: sco:SCO3125 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_003110968.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sco:SCO5452 ABC transporter ATP-binding subunit YP_003110969.1 PFAM: ABC transporter; KEGG: sgr:SGR_876 ABC transporter permease YP_003110970.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: sco:SCO5454 two-component system sensor kinase YP_003110971.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO5455 two-component system response regulator YP_003110972.1 PFAM: protein of unknown function DUF1330; KEGG: mlo:mll3541 hypothetical protein YP_003110974.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: sco:SCO3127 phosphoenolpyruvate carboxylase YP_003110975.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: sgr:SGR_6861 signal peptidase I YP_003110976.1 KEGG: sma:SAV_1715 non-hemolytic phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756 YP_003110977.1 KEGG: sde:Sde_3881 pectate lyase-like YP_003110978.1 KEGG: GJ22283 gene product from transcript GJ22283- RA YP_003110979.1 KEGG: bpl:BURPS1106A_2083 outer membrane protein YP_003110980.1 KEGG: hypothetical protein YP_003110981.1 KEGG: hmo:HM1_1325 hypothetical protein YP_003110982.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: sma:SAV_788 hypothetical protein YP_003110983.1 KEGG: sma:SAV_3557 hypothetical protein YP_003110984.1 KEGG: sma:SAV_3549 transcriptional-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; helicase; TRCF domain protein; DEAD/DEAH box helicase; SMART: DEAD-like helicases; helicase YP_003110985.1 PFAM: major facilitator superfamily MFS_1; KEGG: ade:Adeh_4255 major facilitator transporter YP_003110986.1 KEGG: sma:SAV_3538 lipoprotein YP_003110987.1 KEGG: sco:SCO7720 hypothetical protein YP_003110988.1 KEGG: sma:SAV_4727 hypothetical protein YP_003110989.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO4450 TetR family transcriptional regulator YP_003110990.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_003110991.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: mle:ML1331 twin argininte translocase protein A YP_003110992.1 KEGG: sen:SACE_5661 hypothetical protein YP_003110993.1 PFAM: protein of unknown function DUF885; KEGG: ace:Acel_1952 hypothetical protein YP_003110994.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sma:SAV_4878 two-component system response regulator YP_003110995.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sma:SAV_4879 two-component system sensor kinase YP_003110996.1 PFAM: Clp domain protein; KEGG: rha:RHA1_ro00243 ATP-dependent Clp protease ATP-binding subunit YP_003110997.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_003110998.1 PFAM: septum formation initiator; KEGG: sma:SAV_3532 hypothetical protein YP_003110999.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sma:SAV_4878 two-component system response regulator YP_003111000.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: fal:FRAAL5519 two-component system sensor kinase YP_003111002.1 activates fatty acids by binding to coenzyme A YP_003111003.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sen:SACE_5293 two-component system sensor kinase YP_003111004.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: fre:Franean1_5311 two component transcriptional regulator YP_003111005.1 KEGG: ace:Acel_1453 hypothetical protein YP_003111006.1 PFAM: protein of unknown function DUF214; KEGG: saq:Sare_0223 hypothetical protein YP_003111007.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: saq:Sare_0222 ABC transporter YP_003111008.1 PFAM: secretion protein HlyD; KEGG: ace:Acel_1450 RND family efflux transporter MFP subunit YP_003111009.1 KEGG: cau:Caur_0266 phosphate binding protein YP_003111010.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: mab:MAB_2246 thiol-specific antioxidant related protein/peroxidoxin BcpB YP_003111011.1 PFAM: beta-lactamase; KEGG: sco:SCO7301 hypothetical protein YP_003111012.1 KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein YP_003111013.1 PFAM: cell wall binding repeat 2- containing protein; KEGG: ace:Acel_1679 protease-like YP_003111014.1 PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: ace:Acel_1679 protease-like YP_003111015.1 PFAM: transposase mutator type; KEGG: sma:SAV_347 IS256 family transposase YP_003111016.1 KEGG: cms:CMS_1496 large integral membrane protein YP_003111019.1 PFAM: helix-turn-helix domain protein; NB-ARC domain protein; hypothetical protein; SMART: helix-turn-helix domain protein; hypothetical protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator YP_003111020.1 KEGG: hau:Haur_5148 hypothetical protein YP_003111021.1 KEGG: sgr:SGR_5075 hypothetical protein YP_003111022.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; hypothetical protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator YP_003111023.1 SMART: TIR protein; KEGG: fre:Franean1_4251 tetratricopeptide TPR_4 YP_003111024.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_003111025.1 KEGG: kra:Krad_3958 clavaminate synthase YP_003111026.1 KEGG: cmi:CMM_0528 metal-dependent hydrolase YP_003111028.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_003111030.1 PFAM: protein of unknown function DUF74; KEGG: mmi:MMAR_5292 hypothetical protein YP_003111031.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sma:SAV_4224 glycerophosphoryl diester phosphodiesterase YP_003111032.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sco:SCO3975 regulator YP_003111033.1 PFAM: glutamine amidotransferase class-I; chorismate binding-like; KEGG: stp:Strop_2960 glutamine amidotransferase class-I YP_003111034.1 PFAM: SEC-C motif domain protein; KEGG: sma:SAV_4226 hypothetical protein YP_003111035.1 KEGG: sgr:SGR_798 hypothetical protein YP_003111036.1 PFAM: TetR family transcriptional regulator; KEGG: sen:SACE_0659 TetR family transcriptional regulator YP_003111037.1 PFAM: glycosyl transferase family 2; KEGG: kra:Krad_0170 glycosyl transferase YP_003111038.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: sma:SAV_4348 hypothetical protein YP_003111039.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003111041.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sgr:SGR_2995 RNA polymerase ECF-subfamily sigma factor YP_003111042.1 PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_1492 major facilitator superfamily permease YP_003111043.1 PFAM: cell wall binding repeat 2- containing protein; KEGG: ace:Acel_1679 protease-like YP_003111044.1 catalyzes the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_003111045.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_003111046.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_003111047.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_003111048.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_003111051.1 KEGG: sma:SAV_5745 hypothetical protein YP_003111052.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: stp:Strop_2409 major facilitator transporter YP_003111053.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: bcz:BCZK1497 transcriptional regulator YP_003111054.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sco:SCO0724 transcriptional regulator YP_003111055.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: sgr:SGR_3436 iron-sulphur-binding reductase YP_003111056.1 KEGG: sgr:SGR_5144 lipoprotein YP_003111058.1 SMART: helix-turn-helix domain protein; KEGG: fal:FRAAL0518 DNA-binding protein YP_003111059.1 PFAM: protein of unknown function DUF397; KEGG: sen:SACE_6608 regulator YP_003111060.1 PFAM: protein of unknown function DUF397; KEGG: nfa:nfa56120 hypothetical protein YP_003111061.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV_2672 HSP90 family protein YP_003111062.1 KEGG: sma:SAV_2673 hypothetical protein YP_003111063.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fre:Franean1_0089 ECF subfamily RNA polymerase sigma-24 factor YP_003111064.1 KEGG: fal:FRAAL1192 serine/threonine protein kinase YP_003111065.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_003111066.1 PFAM: aminotransferase class-III; KEGG: sgr:SGR_3382 aminotransferase YP_003111067.1 KEGG: mpo:Mpop_5291 OmpA/MotB domain protein YP_003111068.1 KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein YP_003111069.1 KEGG: sma:SAV_5729 hypothetical protein YP_003111070.1 PFAM: isochorismatase hydrolase; KEGG: sco:SCO0748 hydrolase YP_003111071.1 PFAM: major facilitator superfamily MFS_1; KEGG: mbn:Mboo_0388 major facilitator transporter YP_003111072.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bmj:BMULJ_04209 MarR family transcriptional regulator YP_003111073.1 KEGG: sma:SAV_4149 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201 YP_003111074.1 KEGG: sgr:SGR_3860 hypothetical protein YP_003111075.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_1454 RNA polymerase ECF sigma factor YP_003111076.1 KEGG: cdf:CD3349 exosporium glycoprotein YP_003111077.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_003111078.1 KEGG: sen:SACE_3261 hypothetical protein YP_003111079.1 KEGG: rha:RHA1_ro02601 hypothetical protein YP_003111080.1 KEGG: sco:SCO4405 ABC transporter ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003111081.1 PFAM: ABC transporter; KEGG: rha:RHA1_ro02603 multidrug ABC transporter permease YP_003111082.1 KEGG: fra:Francci3_4373 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase YP_003111083.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: sco:SCO4077 phosphoribosylformylglycinamidine synthase subunit PurS YP_003111084.1 KEGG: sma:SAV_4139 phosphoribosylformylglycinamidine synthase subunit I; TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase YP_003111085.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_003111086.1 KEGG: lic:LIC12006 hypothetical protein YP_003111087.1 KEGG: sco:SCO2835 membrane protein YP_003111088.1 KEGG: met:M446_6942 chromosome segregation protein SMC YP_003111089.1 KEGG: sma:SAV_4137 hypothetical protein YP_003111090.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_003111091.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_003111092.1 KEGG: sco:SCO4088 hypothetical protein YP_003111093.1 PFAM: Glu/Leu/Phe/Val dehydrogenase dimerisation region; Glu/Leu/Phe/Val dehydrogenase; KEGG: saq:Sare_0168 Glu/Leu/Phe/Val dehydrogenase dimerisation region YP_003111094.1 KEGG: sco:SCO4090 hypothetical protein YP_003111095.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; KEGG: sgr:SGR_3882 MerR family transcriptional regulator YP_003111096.1 KEGG: fre:Franean1_6988 lysozyme; PFAM: cellulose-binding family II; SMART: cellulose-binding family II YP_003111097.1 PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: fre:Franean1_6579 cytochrome d ubiquinol oxidase subunit II YP_003111098.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: fre:Franean1_6580 cytochrome bd ubiquinol oxidase subunit I YP_003111099.1 PFAM: Penicillinase repressor; KEGG: fre:Franean1_6581 CopY family transcriptional regulator YP_003111100.1 PFAM: peptidase M48 Ste24p; KEGG: aau:AAur_1766 M48 family peptidase YP_003111101.1 catalyzes the removal of amino acids from the N termini of peptides YP_003111102.1 PFAM: MMPL domain protein; KEGG: nca:Noca_3656 MmpL domain-containing protein YP_003111103.1 PFAM: TetR family transcriptional regulator; KEGG: sen:SACE_6185 TetR family transcriptional regulator YP_003111104.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: tfu:Tfu_2825 LysR family transcriptional regulator YP_003111105.1 PFAM: peptidoglycan-binding protein; KEGG: sgr:SGR_1348 amidase YP_003111106.1 KEGG: cbt:CLH_2449 TfoX C-domain superfamily YP_003111107.1 PFAM: Mov34/MPN/PAD-1 family protein; SMART: Mov34/MPN/PAD-1 family protein; KEGG: tfu:Tfu_2370 Mov34/MPN/PAD-1 YP_003111108.1 KEGG: sgr:SGR_1900 glucose transporter; TIGRFAM: sugar transporter; PFAM: general substrate transporter; major facilitator superfamily MFS_1 YP_003111109.1 KEGG: stp:Strop_3309 hypothetical protein YP_003111110.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sgr:SGR_5042 methyltransferase YP_003111111.1 PFAM: Luciferase-like monooxygenase; KEGG: sma:SAV_7083 Rif11-like protein YP_003111112.1 PFAM: helix-turn-helix HxlR type; KEGG: fre:Franean1_4116 HxlR family transcriptional regulator YP_003111113.1 KEGG: fjo:Fjoh_4690 hypothetical protein YP_003111114.1 PFAM: phytanoyl-CoA dioxygenase YP_003111115.1 PFAM: fatty acid hydroxylase; KEGG: nfa:nfa16290 hypothetical protein YP_003111116.1 PFAM: TROVE domain protein; KEGG: nfa:nfa39620 hypothetical protein YP_003111117.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_5254 major facilitator superfamily permease YP_003111118.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bbt:BBta_4007 MarR family transcriptional regulator YP_003111119.1 KEGG: rha:RHA1_ro03810 hypothetical protein YP_003111120.1 KEGG: sma:SAV_2940 hypothetical protein YP_003111121.1 PFAM: hypothetical protein; regulatory protein MerR; KEGG: fre:Franean1_1870 helix-turn-helix type 11 domain-containing protein YP_003111122.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO4486 hypothetical protein YP_003111123.1 PFAM: TetR family transcriptional regulator; KEGG: mab:MAB_1873c TetR family transcriptional regulator YP_003111124.1 PFAM: alcohol dehydrogenase GroES domain protein; KEGG: fal:FRAAL3688 zinc-binding dehydrogenase YP_003111125.1 PFAM: NUDIX hydrolase; KEGG: rha:RHA1_ro06883 hypothetical protein YP_003111126.1 KEGG: sgr:SGR_3669 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: ATPase AAA YP_003111127.1 KEGG: sco:SCO4070 hypothetical protein YP_003111128.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_003111129.1 TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: sma:SAV_4287 30S ribosomal protein S18 YP_003111130.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: sgr:SGR_3673 single-strand DNA- binding protein YP_003111131.1 TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: sco:SCO3906 30S ribosomal protein S6 YP_003111132.1 KEGG: sma:SAV_4290 hypothetical protein YP_003111133.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_003111134.1 PFAM: methicillin resistance protein; KEGG: sma:SAV_4291 hypothetical protein YP_003111135.1 PFAM: alanine racemase domain protein; KEGG: sco:SCO3903 hypothetical protein YP_003111136.1 KEGG: sma:SAV_4147 hypothetical protein YP_003111137.1 KEGG: sgr:SGR_3221 hypothetical protein YP_003111138.1 KEGG: sco:SCO3902 integral membrane protein YP_003111139.1 PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: sma:SAV_4294 penicillin-binding protein YP_003111140.1 PFAM: transcriptional regulator PadR family protein; KEGG: sco:SCO3900 hypothetical protein YP_003111141.1 TIGRFAM: inositol 1-phosphate synthase; PFAM: myo-inositol-1-phosphate synthase; myo- inositol-1-phosphate synthase GAPDH domain protein; KEGG: sco:SCO3899 hypothetical protein YP_003111142.1 PFAM: cell wall binding repeat 2- containing protein; KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein YP_003111143.1 PFAM: protein of unknown function DUF1684; KEGG: sco:SCO1747 hypothetical protein YP_003111144.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: fre:Franean1_1175 BadM/Rrf2 family transcriptional regulator YP_003111146.1 PFAM: peptidase S53 propeptide; KEGG: sma:SAV_5949 serine protease YP_003111147.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_3555 EmrB/QacA family drug resistance transporter YP_003111148.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: sma:SAV_1846 transcription regulator AsnC YP_003111149.1 KEGG: sco:SCO4536 hypothetical protein YP_003111150.1 KEGG: hypothetical protein YP_003111151.1 KEGG: dge:Dgeo_2488 integral membrane protein YP_003111152.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: sma:SAV_5952 hypothetical protein YP_003111153.1 PFAM: oxidoreductase FAD-binding domain protein; globin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: sgr:SGR_2266 flavohemoprotein YP_003111154.1 KEGG: saq:Sare_1411 vitamin B12-dependent ribonucleotide reductase YP_003111155.1 PFAM: transglutaminase; KEGG: ret:RHE_PE00204 hypothetical protein YP_003111156.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sma:SAV_3810 epoxide hydrolase YP_003111157.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sgr:SGR_935 sensor-like histidine kinase YP_003111158.1 PFAM: Roadblock/LC7 family protein; KEGG: sma:SAV_1632 hypothetical protein YP_003111159.1 PFAM: protein of unknown function DUF742; KEGG: sco:SCO6796 hypothetical protein YP_003111160.1 PFAM: protein of unknown function ATP binding; KEGG: tfu:Tfu_2447 ATP/GTP-binding protein YP_003111161.1 PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: sma:SAV_1629 hypothetical protein YP_003111162.1 KEGG: sma:SAV_609 3-oxoacyl-(acyl carrier protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III YP_003111163.1 PFAM: phosphopantetheine-binding; KEGG: sco:SCO0549 acyl carrier protein YP_003111164.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: npu:Npun_R2083 AMP-dependent synthetase and ligase YP_003111166.1 KEGG: fal:FRAAL6075 hypothetical protein YP_003111167.1 PFAM: coagulation factor 5/8 type domain protein; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; coagulation factor 5/8 type domain protein; KEGG: sco:SCO7015 secreted glycosyl hydrolase YP_003111168.1 PFAM: regulatory protein LysR; KEGG: fal:FRAAL3598 LysR family transcriptional regulator YP_003111169.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mlo:mlr3236 oxidoreductase YP_003111170.1 PFAM: Limonene-12-epoxide hydrolase; KEGG: fal:FRAAL3597 delta-5-3-ketosteroid isomerase- like protein (fragment) (partial match) YP_003111171.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_5162 acetyltransferase YP_003111172.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sco:SCO7709 MarR family transcriptional regulator YP_003111173.1 KEGG: sco:SCO7708 hypothetical protein YP_003111174.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_3047 TetR family transcriptional regulator YP_003111175.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV_1467 dehydrogenase YP_003111176.1 PFAM: protein of unknown function DUF1486; KEGG: ana:alr3729 unknown protein YP_003111177.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sma:SAV_7306 LysR family transcriptional regulator YP_003111178.1 TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: sco:SCO0924 cytochrome b subunit YP_003111179.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_003111180.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin; KEGG: sco:SCO0922 succinate dehydrogenase/fumarate reductase iron-sulfur subunit YP_003111181.1 KEGG: sma:SAV_5252 sugar hydrolase YP_003111182.1 KEGG: stp:Strop_2883 WGR domain-containing protein YP_003111183.1 KEGG: ace:Acel_1679 protease-like YP_003111184.1 PFAM: FMN-binding domain protein; KEGG: ace:Acel_0050 FMN-binding domain-containing protein YP_003111185.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding 8 domain protein; ferric reductase domain protein transmembrane component domain; KEGG: fal:FRAAL0548 oxidoreductase YP_003111186.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: mxa:MXAN_2836 Aha1 domain protein YP_003111187.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_003111188.1 KEGG: sma:SAV_696 hypothetical protein YP_003111189.1 PFAM: protein of unknown function DUF336; KEGG: sma:SAV_4279 hypothetical protein YP_003111190.1 PFAM: hypothetical protein; TPR repeat-containing protein; hypothetical protein; SMART: helix-turn-helix domain protein; hypothetical protein; KEGG: sma:SAV_4421 regulatory protein YP_003111191.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sma:SAV_7423 prolyl aminopeptidase YP_003111192.1 PFAM: protein of unknown function DUF239; KEGG: gvi:gll1344 unknown protein YP_003111193.1 PFAM: protein of unknown function DUF239; KEGG: hypothetical protein YP_003111194.1 PFAM: TetR family transcriptional regulator; KEGG: kra:Krad_4255 TetR family transcriptional regulator YP_003111195.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_7490 transmembrane efflux protein YP_003111196.1 PFAM: TetR family transcriptional regulator; KEGG: fal:FRAAL3956 TetR family transcriptional regulator YP_003111197.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: fal:FRAAL2466 short chain dehydrogenase YP_003111198.1 KEGG: sen:SACE_3470 dual specificity protein phosphatase YP_003111199.1 PFAM: MgtC/SapB transporter; KEGG: gdj:Gdia_2872 MgtC/SapB transporter YP_003111200.1 KEGG: fre:Franean1_1635 hypothetical protein YP_003111201.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_6391 drug/proton antiporter YP_003111202.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: art:Arth_0445 transcriptional regulator, XRE family YP_003111203.1 KEGG: eba:ebA2079 hypothetical protein YP_003111204.1 KEGG: sen:SACE_4855 hypothetical protein YP_003111205.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_7490 transmembrane efflux protein YP_003111206.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: amr:AM1_3890 oxidoreductase, short chain dehydrogenase/reductase family protein YP_003111207.1 PFAM: Tetracyclin repressor domain protein; TetR family transcriptional regulator; KEGG: sma:SAV_775 TetR family transcriptional regulator YP_003111208.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; helicase; KEGG: sgr:SGR_1018 hypothetical protein YP_003111209.1 KEGG: sen:SACE_2039 hypothetical protein YP_003111210.1 PFAM: Ig family protein; KEGG: bam:Bamb_0804 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_003111211.1 KEGG: bmv:BMASAVP1_A0748 serine protease YP_003111212.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_1454 RNA polymerase ECF sigma factor YP_003111214.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sco:SCO1356 iron sulphur protein (secreted protein) YP_003111215.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_2262 serine/threonine protein kinase YP_003111216.1 KEGG: sma:SAV_6625 hypothetical protein YP_003111217.1 PFAM: oxidoreductase molybdopterin binding; KEGG: sma:SAV_6624 hypothetical protein YP_003111218.1 PFAM: alpha/beta hydrolase fold protein; KEGG: nca:Noca_3836 alpha/beta hydrolase fold protein YP_003111219.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: rha:RHA1_ro03342 hypothetical protein YP_003111220.1 KEGG: sco:SCO3738 integral membrane protein YP_003111221.1 PFAM: peptidase C60 sortase A and B; KEGG: sma:SAV_92 lipoprotein YP_003111222.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: sco:SCO3736 RNA polymerase ECF sigma factor YP_003111223.1 KEGG: sma:SAV_94 hypothetical protein YP_003111224.1 PFAM: carbohydrate-binding family V/XII; 3D domain protein; SMART: carbohydrate-binding family V/XII; KEGG: sgr:SGR_6088 chitinase YP_003111225.1 PFAM: cellulose-binding family II; Fibronectin type III domain protein; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: fre:Franean1_6988 lysozyme YP_003111226.1 KEGG: gvi:gll3649 hypothetical protein YP_003111227.1 KEGG: fra:Francci3_0876 ATP/GTP binding protein YP_003111228.1 KEGG: hypothetical protein; K10592 E3 ubiquitin-protein ligase HUWE1 YP_003111229.1 KEGG: sco:SCO5269 hypothetical protein YP_003111230.1 SMART: ATPase AAA; KEGG: sco:SCO2449 hypothetical protein YP_003111231.1 KEGG: sco:SCO5271 hypothetical protein YP_003111233.1 PFAM: radical SAM protein; KEGG: fre:Franean1_5726 radical SAM domain- containing protein YP_003111234.1 KEGG: sma:SAV_5712 ATP/GTP-binding protein YP_003111235.1 KEGG: sgr:SGR_7062t hypothetical protein YP_003111236.1 KEGG: sma:SAV_624 hypothetical protein YP_003111237.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: sus:acid_7414 hypothetical protein YP_003111238.1 KEGG: bur:Bcep18194_A5663 DNA translocase FtsK YP_003111239.1 KEGG: bac:BamMC406_0814 peptidase S8 and S53 subtilisin kexin sedolisin YP_003111240.1 KEGG: stp:Strop_3846 hypothetical protein YP_003111241.1 KEGG: nca:Noca_0921 ABC transporter; TIGRFAM: phosphate ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA YP_003111242.1 TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: nca:Noca_0919 peptidase C60, sortase A and B YP_003111243.1 KEGG: saq:Sare_2623 hypothetical protein YP_003111244.1 PFAM: protein of unknown function DUF916 cell surface KEGG: saq:Sare_2622 hypothetical protein YP_003111245.1 KEGG: sus:acid_6846 NHL repeat-containing protein YP_003111246.1 KEGG: nca:Noca_0920 phosphate ABC transporter periplasmic protein YP_003111247.1 KEGG: nca:Noca_0918 hypothetical protein YP_003111248.1 KEGG: nca:Noca_0917 phosphate ABC transporter periplasmic phosphate-binding protein YP_003111249.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: nca:Noca_0916 phosphate ABC transporter inner membrane subunit PstA YP_003111250.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: nca:Noca_0915 phosphate ABC transporter inner membrane subunit PstC YP_003111252.1 PFAM: beta-lactamase; KEGG: mmi:MMAR_0696 lipoprotein, LpqK YP_003111253.1 PFAM: glycoside hydrolase family 9; Fibronectin type III domain protein; type 3a cellulose-binding domain protein; SMART: Fibronectin type III domain protein; KEGG: tfu:Tfu_2176 endoglucanase YP_003111254.1 KEGG: sco:SCO4754 transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003111255.1 KEGG: tfu:Tfu_1213 xylanase; PFAM: glycoside hydrolase family 11; SMART: cellulose-binding family II YP_003111259.1 KEGG: sco:SCO3733 hypothetical protein YP_003111260.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ace:Acel_1594 periplasmic sensor signal transduction histidine kinase YP_003111261.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: cur:cur_0545 two-component system response regulator MprA YP_003111262.1 KEGG: lpl:lp_0373 cell surface protein precursor () YP_003111263.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: fra:Francci3_2444 two component transcriptional regulator YP_003111264.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: fra:Francci3_2445 periplasmic sensor signal transduction histidine kinase YP_003111265.1 PFAM: alpha/beta hydrolase fold protein; TAP domain protein; KEGG: sco:SCO7650 secreted hydrolase YP_003111266.1 KEGG: sma:SAV_1931 hypothetical protein YP_003111267.1 PFAM: glycoside hydrolase family 11; Ig family protein; cellulose-binding family II; SMART: cellulose-binding family II; Dystroglycan- type cadherin domain protein; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like YP_003111268.1 PFAM: polysaccharide deacetylase; SMART: cellulose-binding family II; KEGG: sco:SCO2291 secreted acetylxylan esterase YP_003111269.1 KEGG: fal:FRAAL6463 hypothetical protein YP_003111270.1 PFAM: extracellular solute-binding protein family 1; KEGG: cms:CMS_0868 solute-binding transporter YP_003111271.1 PFAM: glycosyl transferase family 2; KEGG: bsu:BSU07300 hypothetical protein YP_003111272.1 PFAM: cytochrome P450; KEGG: amr:AM1_E0096 cytochrome P450 family protein YP_003111273.1 KEGG: sgr:SGR_588 hypothetical protein YP_003111274.1 PFAM: glycosyltransferase 28 domain; KEGG: lxx:Lxx06832 glycosyltransferase YP_003111275.1 PFAM: major facilitator superfamily MFS_1; KEGG: lxx:Lxx06835 major facilitator superfamily H(+) antiporter YP_003111277.1 PFAM: cell wall binding repeat 2- containing protein; hypothetical protein; KEGG: ace:Acel_1679 protease-like YP_003111278.1 KEGG: paa:Paes_2382 hypothetical protein YP_003111279.1 KEGG: fra:Francci3_1081 hypothetical protein YP_003111280.1 KEGG: fra:Francci3_1082 hypothetical protein YP_003111281.1 KEGG: fra:Francci3_1083 hypothetical protein YP_003111282.1 KEGG: fra:Francci3_1084 hypothetical protein YP_003111283.1 KEGG: fre:Franean1_5725 hypothetical protein YP_003111284.1 KEGG: fre:Franean1_5724 ATP/GTP-binding protein YP_003111285.1 KEGG: cak:Caul_1675 hypothetical protein YP_003111286.1 KEGG: sco:SCO2376 hypothetical protein YP_003111287.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: sma:SAV_2480 hypothetical protein YP_003111288.1 PFAM: protein of unknown function DUF955; SMART: Appr-1-p processing domain protein; KEGG: sus:acid_6274 hypothetical protein YP_003111289.1 KEGG: sus:acid_6275 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase YP_003111290.1 KEGG: sus:acid_6276 hypothetical protein YP_003111291.1 KEGG: sgr:SGR_3293 hypothetical protein YP_003111293.1 PFAM: cell wall binding repeat 2- containing protein; PKD domain containing protein; SMART: PKD domain containing protein; Parallel beta- helix repeat; KEGG: ace:Acel_1679 protease-like YP_003111294.1 PFAM: cell wall binding repeat 2- containing protein; SMART: PKD domain containing protein; KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein YP_003111295.1 PFAM: cell wall binding repeat 2- containing protein; KEGG: ace:Acel_1679 protease-like YP_003111296.1 PFAM: TrkA-N domain protein; KEGG: fal:FRAAL6687 potassium channel protein YP_003111297.1 KEGG: nfa:nfa54480 hypothetical protein YP_003111299.1 PFAM: radical SAM protein; KEGG: saq:Sare_2654 radical SAM domain-containing protein YP_003111300.1 PFAM: aminoglycoside 3-N-acetyltransferase; KEGG: saq:Sare_2653 aminoglycoside N(3')- acetyltransferase YP_003111301.1 KEGG: sgr:SGR_5767 hypothetical protein YP_003111302.1 KEGG: sgr:SGR_5768 ATP/GTP-binding protein YP_003111303.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sgr:SGR_5769 alpha/beta hydrolase fold protein protein YP_003111305.1 PFAM: Integrase catalytic region; KEGG: fre:Franean1_3414 integrase catalytic region YP_003111306.1 KEGG: sma:SAV_5694 hypothetical protein YP_003111309.1 KEGG: xac:XAC0254 Na+/H+-exchanging protein YP_003111310.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sen:SACE_3708 abhydrolase, alpha/beta hydrolase fold protein YP_003111311.1 PFAM: thioesterase; KEGG: npu:Npun_F0780 thioesterase YP_003111312.1 PFAM: protein of unknown function DUF574; KEGG: stp:Strop_3280 hypothetical protein YP_003111313.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mab:MAB_4054c hypothetical protein YP_003111314.1 PFAM: tryptophan halogenase; monooxygenase FAD- binding; FAD dependent oxidoreductase; KEGG: fal:FRAAL4634 halogenase YP_003111315.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: hch:HCH_01667 phosphopantetheinyl transferase YP_003111316.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: sgr:SGR_5183 hypothetical protein YP_003111317.1 KEGG: sgr:SGR_5184 hypothetical protein YP_003111318.1 KEGG: sdn:Sden_1069 hypothetical protein YP_003111319.1 KEGG: fra:Francci3_3280 transglutaminase-like YP_003111320.1 KEGG: tte:TTE1471 acyl carrier protein YP_003111321.1 KEGG: cau:Caur_3331 ribonucleotide-diphosphate reductase subunit beta YP_003111322.1 PFAM: AMP-dependent synthetase and ligase; KEGG: saq:Sare_3010 AMP-dependent synthetase and ligase YP_003111323.1 PFAM: major facilitator superfamily MFS_1; KEGG: kpe:KPK_1427 transporter major facilitator family YP_003111324.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sen:SACE_1630 transcriptional regulator YP_003111325.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: afe:Lferr_0188 aminotransferase class V YP_003111326.1 KEGG: tfu:Tfu_0795 hypothetical protein; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003111327.1 PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_2123 major facilitator superfamily permease YP_003111328.1 KEGG: msm:MSMEG_1852 selenide, water dikinase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003111329.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: dac:Daci_4506 acyl-CoA dehydrogenase domain- containing protein YP_003111330.1 KEGG: dac:Daci_4507 hypothetical protein YP_003111331.1 KEGG: dac:Daci_4508 hypothetical protein YP_003111332.1 KEGG: kra:Krad_1608 selenocysteine synthase YP_003111333.1 PFAM: Integrase catalytic region; KEGG: fre:Franean1_0474 integrase catalytic region YP_003111335.1 PFAM: glutamine synthetase; glutamine synthetase beta-Grasp; KEGG: sgr:SGR_5302 glutamine synthetase YP_003111336.1 KEGG: sco:SCO6025 hypothetical protein YP_003111337.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ava:Ava_0978 glyoxalase/bleomycin resistance protein/dioxygenase YP_003111338.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fre:Franean1_3989 MarR family transcriptional regulator YP_003111339.1 PFAM: YCII-related; KEGG: kra:Krad_2755 DGPFAETKE family protein YP_003111340.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: saq:Sare_0956 RNA polymerase ECF-subfamily sigma factor YP_003111342.1 KEGG: fre:Franean1_2802 hypothetical protein YP_003111343.1 PFAM: protein of unknown function DUF574; KEGG: sen:SACE_2002 hypothetical protein YP_003111344.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: afw:Anae109_0026 hypothetical protein YP_003111345.1 KEGG: fre:Franean1_5756 3-oxoacyl-(acyl carrier protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III YP_003111346.1 PFAM: NADPH-dependent FMN reductase; KEGG: sgr:SGR_3807 NAD(P)H-dependent FMN reductase YP_003111347.1 PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO3296 oxidoreductase YP_003111348.1 KEGG: sma:SAV_4408 integral membrane protein YP_003111349.1 PFAM: protein of unknown function DUF718; KEGG: sma:SAV_7285 hypothetical protein YP_003111350.1 PFAM: amidohydrolase; KEGG: sma:SAV_7286 hypothetical protein YP_003111351.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: stp:Strop_2137 tRNA/rRNA methyltransferase (SpoU) YP_003111352.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: bph:Bphy_2889 methyltransferase type 11 YP_003111353.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: oan:Oant_3760 2-hydroxy-3-oxopropionate reductase YP_003111354.1 KEGG: ace:Acel_1027 DivIVA family protein YP_003111355.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; globin; oxidoreductase FAD-binding domain protein; KEGG: sen:SACE_7206 flavohemoprotein YP_003111356.1 PFAM: globin; KEGG: mgi:Mflv_3264 globin YP_003111357.1 PFAM: peptidase M48 Ste24p; KEGG: sgr:SGR_3027 Zn-dependent protease with chaperone function YP_003111358.1 KEGG: sen:SACE_6654 hypothetical protein YP_003111359.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sma:SAV_7067 hydrolase YP_003111360.1 PFAM: glycosyl transferase family 39; KEGG: sma:SAV_3592 integral membrane protein YP_003111361.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sco:SCO3153 hypothetical protein YP_003111362.1 TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: mav:MAV_3971 death-on-curing protein YP_003111364.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_003111365.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: sma:SAV_3589 deoxyribonuclease YP_003111366.1 PFAM: transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: sma:SAV_3588 hypothetical protein YP_003111367.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_003111368.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: mjl:Mjls_4641 4-diphosphocytidyl-2-C-methyl-D- erythritol kinase YP_003111369.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: fal:FRAAL0578 serine/threonine protein kinase YP_003111370.1 PFAM: YiaAB two helix domain protein; KEGG: sco:SCO1700 hypothetical protein YP_003111371.1 PFAM: MgtC/SapB transporter; KEGG: bbt:BBta_7258 MgtC family protein YP_003111372.1 PFAM: aminotransferase class I and II; KEGG: fra:Francci3_3742 aminotransferase, class I and II YP_003111373.1 KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003111374.1 KEGG: stp:Strop_2883 WGR domain-containing protein YP_003111375.1 KEGG: stp:Strop_2883 WGR domain-containing protein YP_003111376.1 KEGG: stp:Strop_2883 WGR domain-containing protein YP_003111377.1 PFAM: ATPase associated with various cellular activities AAA_5; KEGG: stp:Strop_2882 ATPase YP_003111378.1 KEGG: stp:Strop_2881 hypothetical protein YP_003111379.1 PFAM: von Willebrand factor A; SMART: von Willebrand factor type A; KEGG: stp:Strop_2880 von Willebrand factor A YP_003111380.1 KEGG: predicted protein YP_003111381.1 KEGG: sgr:SGR_3601 two-component system sensor kinase/response regulator, bifunctional protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_003111382.1 PFAM: phosphoesterase; KEGG: rha:RHA1_ro02476 phospholipase C YP_003111383.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rle:RL2998 hydrolase YP_003111384.1 KEGG: pap:PSPA7_4664 hypothetical protein YP_003111385.1 PFAM: DoxX family protein; KEGG: nca:Noca_2193 DoxX family protein YP_003111386.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: fal:FRAAL5519 two-component system sensor kinase YP_003111387.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: nfa:nfa22890 two-component system response regulator YP_003111388.1 PFAM: NmrA family protein; KEGG: sen:SACE_4546 secreted protein YP_003111389.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: saq:Sare_3223 BadM/Rrf2 family transcriptional regulator YP_003111390.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: tfu:Tfu_0869 hypthetical protein YP_003111391.1 KEGG: sgr:SGR_6548 hypothetical protein YP_003111392.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO5914 transcriptional regulator YP_003111393.1 PFAM: peptidase M9A collagenase domain protein; peptidase M9 domain; peptidase domain protein; KEGG: sgr:SGR_1615 collagenase YP_003111394.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sgr:SGR_1978 LacI family transcriptional regulator YP_003111395.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_3942 hypothetical protein YP_003111396.1 PFAM: beta-lactamase; KEGG: mab:MAB_1114 metallo-beta-lactamase superfamily YP_003111397.1 PFAM: NUDIX hydrolase; KEGG: sma:SAV_1920 hypothetical protein YP_003111398.1 PFAM: rhomboid family protein; KEGG: sma:SAV_6192 hypothetical protein YP_003111399.1 KEGG: sco:SCO1314 sugar acetyltransferase YP_003111400.1 PFAM: DeoR family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; Helix-turn-helix type 11 domain protein; SMART: DeoR family transcriptional regulator; KEGG: sgr:SGR_290 LacI family transcriptional regulator YP_003111401.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sgr:SGR_286 2-hydroxyacid family dehydrogenase YP_003111402.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_1705 extracellular solute-binding protein, family 1 YP_003111403.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_1706 binding-protein-dependent transport systems inner membrane component YP_003111404.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_1707 binding-protein-dependent transport systems inner membrane component YP_003111405.1 KEGG: hypothetical protein YP_003111406.1 KEGG: spe:Spro_4618 hypothetical protein YP_003111407.1 PFAM: PilT protein domain protein; KEGG: rce:RC1_3718 hypothetical protein YP_003111408.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sgr:SGR_6321 oxidoreductase YP_003111409.1 PFAM: NUDIX hydrolase; KEGG: fra:Francci3_4093 NUDIX hydrolase YP_003111410.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sma:SAV_7424 ECF subfamily RNA polymerase sigma factor YP_003111411.1 PFAM: beta-lactamase; KEGG: mac:MA1345 FmtA-like protein YP_003111412.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: stp:Strop_2757 histidine kinase, dimerisation and phosphoacceptor region YP_003111413.1 PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sgr:SGR_5299 two-component system response regulator YP_003111414.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sma:SAV_2438 two-component system response regulator YP_003111415.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sma:SAV_2439 two-component system sensor kinase YP_003111416.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_003111417.1 KEGG: ace:Acel_1899 hypothetical protein YP_003111418.1 KEGG: sma:SAV_3515 hypothetical protein YP_003111420.1 PFAM: lipolytic protein G-D-S-L family; KEGG: sma:SAV_3511 secreted protein YP_003111421.1 KEGG: sma:SAV_3510 cystathionine beta-synthase; TIGRFAM: cystathionine beta-synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; CBS domain containing protein; SMART: CBS domain containing protein YP_003111422.1 KEGG: rha:RHA1_ro00343 transcriptional regulator YP_003111423.1 PFAM: Proline dehydrogenase; KEGG: sen:SACE_1978 proline dehydrogenase YP_003111424.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: sen:SACE_1979 delta-1-pyrroline-5-carboxylate dehydrogenase precursor YP_003111425.1 TIGRFAM: regulatory protein, FmdB family; KEGG: sco:SCO2357 hypothetical protein YP_003111426.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sgr:SGR_5899 secreted subtilisin- like serine protease YP_003111427.1 PFAM: protein of unknown function DUF1503; KEGG: sma:SAV_1376 hypothetical protein YP_003111428.1 KEGG: rha:RHA1_ro01554 hypothetical protein YP_003111429.1 PFAM: protein of unknown function DUF1023; KEGG: sma:SAV_4532 hypothetical protein YP_003111430.1 PFAM: ribonuclease BN; KEGG: fal:FRAAL4293 hypothetical protein YP_003111431.1 PFAM: protein of unknown function DUF72; KEGG: fra:Francci3_3289 hypothetical protein YP_003111432.1 KEGG: spn:SP_1772 cell wall surface anchor family protein YP_003111433.1 KEGG: sco:SCO4226 hypothetical protein YP_003111435.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine YP_003111436.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: dau:Daud_0439 hypothetical protein YP_003111437.1 KEGG: spw:SPCG_1750 cell wall surface anchor family protein YP_003111438.1 PFAM: ROK family protein; KEGG: msm:MSMEG_1363 glucokinase YP_003111439.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_5165 major facilitator superfamily permease YP_003111440.1 PFAM: regulatory protein MarR; ArsR family transcriptional regulator; SMART: regulatory protein MarR; KEGG: fal:FRAAL0920 hypothetical protein YP_003111441.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_003111442.1 KEGG: sco:SCO4963 ABC transporter ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003111443.1 PFAM: ABC transporter; KEGG: sgr:SGR_2566 ABC transporter permease YP_003111444.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: tfu:Tfu_3065 tyrosine protein kinase:serine/threonine protein kinase YP_003111445.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_003111446.1 KEGG: nfa:nfa48250 hypothetical protein YP_003111447.1 TIGRFAM: mycothiol conjugate amidase Mca; PFAM: LmbE family protein; KEGG: saq:Sare_0868 LmbE family protein YP_003111448.1 KEGG: sgr:SGR_2561 hypothetical protein YP_003111449.1 PFAM: class I peptide chain release factor; KEGG: saq:Sare_1139 hypothetical protein YP_003111450.1 PFAM: Neutral/alkaline nonlysosomal ceramidase; KEGG: sen:SACE_3165 hydrolase YP_003111451.1 KEGG: aau:AAur_2565 integral membrane protein YP_003111452.1 PFAM: ABC transporter; KEGG: aau:AAur_2566 ABC transporter ATP- binding protein YP_003111453.1 PFAM: GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: nfa:nfa3720 transcriptional regulator YP_003111454.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fal:FRAAL1328 RNA polymerase ECF-subfamily sigma factor YP_003111455.1 KEGG: sma:SAV_2776 L-serine dehydratase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_003111456.1 PFAM: protein of unknown function DUF214; KEGG: fre:Franean1_1655 hypothetical protein YP_003111457.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fre:Franean1_1654 ABC transporter YP_003111458.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: fre:Franean1_1653 histidine kinase YP_003111459.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: fre:Franean1_1652 LuxR family transcriptional regulator YP_003111460.1 PFAM: ATPase AAA; ATPase AAA central domain protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA; KEGG: sen:SACE_6954 Clp protease ATP binding subunit YP_003111461.1 KEGG: bpt:Bpet1785 cytochrome p450 oxidoreductase YP_003111462.1 KEGG: sco:SCO7296 hypothetical protein YP_003111463.1 KEGG: mpo:Mpop_3207 metal dependent phosphohydrolase YP_003111464.1 KEGG: dra:DR_1591 hypothetical protein YP_003111465.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: fre:Franean1_1259 major facilitator transporter YP_003111466.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; KEGG: sco:SCO2307 two-component sensor kinase YP_003111467.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sma:SAV_3132 two-component system response regulator YP_003111468.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_5430 ABC transporter ATP-binding protein YP_003111469.1 PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL5378 ABC transporter transmembrane protein YP_003111470.1 PFAM: hypothetical protein; KEGG: sco:SCO1404 hypothetical protein YP_003111471.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV_2672 HSP90 family protein YP_003111472.1 KEGG: sco:SCO1406 hypothetical protein YP_003111473.1 KEGG: sen:SACE_3331 ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP- dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase; HRDC domain protein; helicase; SMART: DEAD-like helicases; helicase; HRDC domain protein YP_003111474.1 PFAM: TetR family transcriptional regulator; KEGG: sma:SAV_7457 TetR family transcriptional regulator YP_003111475.1 PFAM: protein of unknown function DUF1304; KEGG: sma:SAV_7458 hypothetical protein YP_003111476.1 PFAM: alpha/beta hydrolase fold protein-3 domain protein; KEGG: sco:SCO3415 esterase YP_003111477.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sco:SCO3414 transcriptional regulator YP_003111478.1 KEGG: fal:FRAAL0013 hypothetical protein YP_003111479.1 KEGG: fal:FRAAL3336 hypothetical protein YP_003111480.1 PFAM: protein of unknown function DUF255; KEGG: sma:SAV_3296 hypothetical protein YP_003111481.1 KEGG: sco:SCO4995 hypothetical protein YP_003111482.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: sgr:SGR_4062 RNA polymerase ECF-subfamily sigma factor YP_003111483.1 KEGG: sma:SAV_7485 hypothetical protein YP_003111484.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: sco:SCO3739 epimerase YP_003111485.1 PFAM: protein of unknown function DUF74; KEGG: sma:SAV_4658 hypothetical protein YP_003111486.1 PFAM: protein of unknown function DUF1707; KEGG: sgr:SGR_2480 hypothetical protein YP_003111487.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: art:Arth_3104 transcriptional regulator, GntR family YP_003111488.1 PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_4107 major facilitator transporter YP_003111489.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit beta; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, subunit alpha; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: sgr:SGR_2481 fumarate hydratase class I YP_003111490.1 KEGG: sen:SACE_0386 hypothetical protein YP_003111491.1 PFAM: NUDIX hydrolase; KEGG: sco:SCO4373 mut-like protein YP_003111493.1 KEGG: fra:Francci3_1712 hypothetical protein YP_003111494.1 TIGRFAM: phosphonate degradation operons associated HDIG domain protein; KEGG: mlo:mll1439 hypothetical protein YP_003111495.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: aau:AAur_4060 2-dehydro-3- deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase YP_003111496.1 PFAM: amidohydrolase; D-aminoacylase domain protein; KEGG: sen:SACE_5301 N-acyl-D-amino-acid deacylase YP_003111497.1 PFAM: alanine racemase domain protein; KEGG: nfa:nfa19290 hypothetical protein YP_003111498.1 PFAM: PfkB domain protein; KEGG: rsa:RSal33209_0830 2-dehydro-3- deoxygluconokinase YP_003111499.1 KEGG: hypothetical protein YP_003111500.1 PFAM: transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: aau:AAur_4064 IclR family transcriptional regulator YP_003111501.1 PFAM: endoribonuclease L-PSP; KEGG: aau:AAur_4065 endoribonuclease L-PSP family protein YP_003111502.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sco:SCO4777 protein serine/threonine kinase YP_003111504.1 KEGG: kra:Krad_0370 fibronectin type III domain- containing protein YP_003111505.1 PFAM: low temperature requirement A; KEGG: abb:ABBFA_003514 bacterial low temperature requirement A protein (LtrA) family protein YP_003111506.1 KEGG: sma:SAV_3235 hypothetical protein YP_003111507.1 PFAM: lytic transglycosylase catalytic; KEGG: sgr:SGR_5691 hypothetical protein YP_003111508.1 PFAM: PhoH family protein; SMART: nucleotide binding protein PINc; KEGG: sma:SAV_3236 ATP-binding protein YP_003111509.1 KEGG: ace:Acel_1881 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_003111510.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_003111511.1 PFAM: Hly-III family protein; KEGG: sgr:SGR_2557 hypothetical protein YP_003111512.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: saq:Sare_4901 XRE family transcriptional regulator YP_003111513.1 KEGG: sma:SAV_4080 lipoprotein YP_003111515.1 PFAM: protein of unknown function DUF47; KEGG: sgr:SGR_3928 Pit accessory protein YP_003111516.1 PFAM: phosphate transporter; KEGG: sma:SAV_4076 low-affinity inorganic phosphate transporter YP_003111517.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: nfa:nfa47610 pterin-4-alpha-carbinolamine dehydratase YP_003111518.1 PFAM: NUDIX hydrolase; KEGG: sco:SCO5102 MutT-like protein YP_003111519.1 KEGG: sma:SAV_3185 magnesium or manganese-dependent protein phosphatase; TIGRFAM: PAS sensor protein; PFAM: stage II sporulation E family protein; PAS fold domain protein; GAF domain protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; PAS domain containing protein YP_003111520.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: ccr:CC_0456 amino acid transporter LysE YP_003111521.1 PFAM: N-acetyltransferase; KEGG: sma:SAV_5556 N-hydroxyarylamine O- acetyltransferase YP_003111522.1 catalyzes the fumarate and succinate interconversion; fumarate reductase is used under anaerobic conditions with glucose or glycerol as carbon source YP_003111523.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_003111524.1 KEGG: sco:SCO5108 integral membrane protein YP_003111526.1 PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; pyrrolo-quinoline quinone; KEGG: tfu:Tfu_1756 tyrosine protein kinase:serine/threonine protein kinase YP_003111527.1 TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: tfu:Tfu_2456 GTP-binding protein TypA YP_003111528.1 KEGG: sen:SACE_0674 lipoprotein YP_003111530.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; WD-40 repeat protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; hypothetical protein; KEGG: fra:Francci3_3256 WD-40 repeat-containing serine/threonin protein kinase YP_003111531.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: sco:SCO5122 peptidase YP_003111532.1 TIGRFAM:1D-myo-inosityl-2-acetamido-2-deoxy-alpha- D- glucopyranosidedeacetylase; PFAM: LmbE family protein; KEGG: ace:Acel_1868 LmbE family protein YP_003111533.1 KEGG: mtf:TBFG_13547 PE-PGRS family protein YP_003111534.1 PFAM: van Willebrand factor A; KEGG: sgr:SGR_6199 hypothetical protein YP_003111535.1 PFAM: glycosyl transferase group 1; KEGG: sma:SAV_5354 glycosyl transferase YP_003111536.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_3135 ABC transporter ATP-binding protein YP_003111537.1 PFAM: ABC transporter; KEGG: sma:SAV_3134 ABC transporter transmembrane protein YP_003111538.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sco:SCO5131 two-component system sensor kinase YP_003111539.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO5132 two-component system response regulator YP_003111540.1 KEGG: sgr:SGR_313 RNA polymerase ECF-subfamily sigma factor YP_003111541.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_1454 RNA polymerase ECF sigma factor YP_003111542.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_3698 transmembrane efflux protein YP_003111543.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO3207 TetR family transcriptional regulator YP_003111544.1 KEGG: sco:SCO0762 protease inhibitor protein YP_003111545.1 KEGG: sgr:SGR_2690 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin YP_003111546.1 KEGG: sen:SACE_6584 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase YP_003111547.1 KEGG: sma:SAV_3396 succinate dehydrogenase hydrophobic membrane anchor protein YP_003111548.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: sgr:SGR_2687 succinate dehydrogenase membrane subunit YP_003111549.1 KEGG: sgr:SGR_5169 cytochrome P450 YP_003111550.1 KEGG: sma:SAV_3382 methylmalonyl-CoA mutase, alpha subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase YP_003111551.1 KEGG: rha:RHA1_ro08403 hypothetical protein YP_003111552.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fre:Franean1_0089 ECF subfamily RNA polymerase sigma-24 factor YP_003111553.1 KEGG: nar:Saro_1184 endo alpha-1,4 polygalactosaminidase YP_003111554.1 KEGG: sma:SAV_4147 hypothetical protein YP_003111555.1 KEGG: sma:SAV_4147 hypothetical protein YP_003111557.1 KEGG: sgr:SGR_2655 M20/M25/M40 family peptidase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003111558.1 PFAM: basic membrane lipoprotein; KEGG: kra:Krad_3949 basic membrane lipoprotein YP_003111559.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: saq:Sare_0752 ABC transporter YP_003111560.1 PFAM: inner-membrane translocator; KEGG: kra:Krad_3947 inner-membrane translocator YP_003111561.1 PFAM: inner-membrane translocator; KEGG: saq:Sare_0754 inner-membrane translocator YP_003111562.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: lxx:Lxx04640 cytidine deaminase YP_003111563.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_003111565.1 KEGG: sco:SCO4901 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase YP_003111566.1 KEGG: cur:cur_1817 Fe-S oxidoreductase YP_003111568.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sgr:SGR_2636 two-component system sensor kinase YP_003111569.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sco:SCO4907 transcriptional regulator YP_003111570.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: sco:SCO4908 RNA polymerase sigma factor YP_003111571.1 KEGG: hypothetical protein YP_003111573.1 PFAM: aldehyde dehydrogenase; KEGG: sco:SCO4912 aldehyde dehydrogenase YP_003111574.1 PFAM: aldehyde dehydrogenase; KEGG: nca:Noca_3529 aldehyde dehydrogenase (acceptor) YP_003111575.1 KEGG: nca:Noca_3528 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase YP_003111576.1 KEGG: sgr:SGR_2628 integral membrane protein YP_003111577.1 PFAM: Tetracyclin repressor domain protein; TetR family transcriptional regulator; KEGG: scl:sce7023 TetR family transcriptional regulator YP_003111578.1 PFAM: monooxygenase FAD-binding; KEGG: fal:FRAAL5186 oxidoreductase YP_003111579.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: sco:SCO4916 phosphomannomutase YP_003111580.1 TIGRFAM: purine nucleotide phosphorylase; inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1; KEGG: sma:SAV_3342 purine nucleoside phosphorylase YP_003111581.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF895, eukaryotic; KEGG: yen:YE2035 membrane transporter YP_003111582.1 catalyzes the reduction of nonspecific electron acceptors such as 2,6-dimethyl-1,4-benzoquinone and 5-hydroxy-1,4-naphthaquinone; does not have lipoamide dehydrogenase activity YP_003111584.1 KEGG: sma:SAV_2707 hypothetical protein YP_003111585.1 PFAM: carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: sma:SAV_3337 acyl-CoA carboxylase, subunit alpha YP_003111586.1 PFAM: rhomboid family protein; KEGG: sgr:SGR_4203 hypothetical protein YP_003111587.1 KEGG: mmc:Mmcs_2996 hypothetical protein YP_003111588.1 PFAM: isochorismatase hydrolase; KEGG: art:Arth_0076 isochorismatase hydrolase YP_003111589.1 PFAM: cytochrome P450; KEGG: sgr:SGR_529 cytochrome P450 YP_003111590.1 KEGG: sco:SCO4931 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein YP_003111592.1 PFAM: pyruvate carboxyltransferase; KEGG: saq:Sare_0032 pyruvate carboxyltransferase YP_003111593.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sma:SAV_3329 adenylate cyclase YP_003111594.1 PFAM: membrane-flanked domain; KEGG: nca:Noca_3493 membrane-flanked domain- containing protein YP_003111595.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; KEGG: sco:SCO4927 ligase YP_003111596.1 PFAM: carboxyl transferase; KEGG: sgr:SGR_2616 acyl-CoA carboxylase subunit beta YP_003111597.1 KEGG: GD16675 gene product from transcript GD16675- RA YP_003111598.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sco:SCO4923 hypothetical protein YP_003111599.1 KEGG: cef:CE2635 integral membrane protein YP_003111600.1 PFAM: polysaccharide deacetylase; KEGG: sma:SAV_2784 polysaccharide deacetylase YP_003111601.1 KEGG: sma:SAV_2783 hypothetical protein YP_003111602.1 PFAM: PilT protein domain protein; KEGG: fra:Francci3_2617 nucleic acid binding protein YP_003111603.1 KEGG: saq:Sare_4424 hypothetical protein YP_003111604.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: sen:SACE_4508 formate dehydrogenase accessory protein YP_003111605.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: saq:Sare_4165 ABC transporter related YP_003111606.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: stp:Strop_3786 ABC transporter related YP_003111607.1 PFAM: transglycosylase domain protein; KEGG: sgr:SGR_2504 hypothetical protein YP_003111608.1 KEGG: cmi:CMM_0370 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_003111609.1 KEGG: sgr:SGR_4473 peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1 YP_003111610.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sma:SAV_3481 two-component system response regulator YP_003111611.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sco:SCO3062 two-component system histidine kinase YP_003111612.1 PFAM: GtrA family protein; KEGG: sma:SAV_5020 hypothetical protein YP_003111613.1 PFAM: GtrA family protein; KEGG: saq:Sare_0806 GtrA family protein YP_003111614.1 KEGG: sco:SCO3060 phosphoribosylaminoimidazole carboxylase ATPase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_003111615.1 KEGG: sco:SCO3059 phosphoribosylaminoimidazole carboxylase catalytic subunit PurE; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase YP_003111616.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: fre:Franean1_0245 serine/threonine protein kinase YP_003111618.1 KEGG: hypothetical protein YP_003111619.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: sma:SAV_4881 NADH dehydrogenase I chain A YP_003111620.1 KEGG: sma:SAV_4882 NADH dehydrogenase I chain B; TIGRFAM: NADH-quinone oxidoreductase subunit beta; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003111621.1 PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: sgr:SGR_2923 NADH dehydrogenase subunit YP_003111622.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sgr:SGR_2922 NADH dehydrogenase chain H YP_003111623.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sma:SAV_4885 NADH dehydrogenase I chain I YP_003111624.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: sma:SAV_4886 NADH dehydrogenase I chain J YP_003111625.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: sgr:SGR_2919 NADH dehydrogenase chain K YP_003111626.1 KEGG: sgr:SGR_2918 NADH dehydrogenase chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_003111627.1 KEGG: sma:SAV_4889 NADH dehydrogenase I chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_003111628.1 KEGG: sgr:SGR_2916 NADH dehydrogenase chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_003111629.1 metalloprotease YP_003111630.1 KEGG: sma:SAV_4868 ABC transporter membrane protein YP_003111631.1 KEGG: sma:SAV_4866 hypothetical protein YP_003111632.1 PFAM: protein of unknown function DUF520; KEGG: sco:SCO4614 nucleotide-binding protein YP_003111633.1 KEGG: sma:SAV_5949 serine protease YP_003111634.1 PFAM: peptidase S53 propeptide; KEGG: sma:SAV_5949 serine protease YP_003111635.1 PFAM: glycoside hydrolase family 5; KEGG: hypothetical protein YP_003111636.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; SCP-like extracellular; KEGG: sgr:SGR_313 RNA polymerase ECF-subfamily sigma factor YP_003111637.1 PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: stp:Strop_4190 aminoglycoside phosphotransferase YP_003111638.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sgr:SGR_6626 zinc-binding dehydrogenase YP_003111639.1 PFAM: protein of unknown function DUF218; KEGG: sen:SACE_4407 hypothetical protein YP_003111640.1 PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: art:Arth_3970 DNA polymerase III subunit epsilon YP_003111641.1 PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: fal:FRAAL5492 thiol:disulfide interchange protein YP_003111642.1 PFAM: TetR family transcriptional regulator; KEGG: fre:Franean1_5699 TetR family transcriptional regulator YP_003111643.1 KEGG: scl:sce_pseudo_02 pseudogene YP_003111644.1 KEGG: clec-122; C-type LECtin YP_003111645.1 PFAM: protein of unknown function DUF1271; globin; SMART: zinc finger CDGSH-type domain protein; KEGG: mbu:Mbur_2272 hypothetical protein YP_003111646.1 PFAM: TetR family transcriptional regulator; KEGG: rha:RHA1_ro02799 TetR family transcriptional regulator YP_003111647.1 PFAM: condensation domain protein; KEGG: sgr:SGR_5180 hypothetical protein YP_003111648.1 KEGG: mxa:MXAN_7048 hypothetical protein YP_003111649.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: kra:Krad_3828 ATPase central domain- containing protein YP_003111650.1 KEGG: sco:SCO4456 membrane-associated oxidoreductase YP_003111652.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: stp:Strop_2558 deaminase-reductase domain- containing protein YP_003111653.1 KEGG: sgr:SGR_3185 hypothetical protein YP_003111654.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: sma:SAV_1780 hypothetical protein YP_003111655.1 PFAM: TAP domain protein; alpha/beta hydrolase fold protein; KEGG: sma:SAV_4624 protease YP_003111656.1 KEGG: hypothetical protein YP_003111657.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; KEGG: ton:TON_1355 subtilisin-like serine protease precursor YP_003111658.1 KEGG: sgr:SGR_732 short chain dehydrogenase YP_003111659.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bte:BTH_II0666 AraC family transcriptional regulator YP_003111660.1 PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); KEGG: sma:SAV_1752 glycosyl hydrolase YP_003111662.1 KEGG: sgr:SGR_1148 hypothetical protein YP_003111663.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_1707 binding-protein-dependent transport systems inner membrane component YP_003111664.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_1706 binding-protein-dependent transport systems inner membrane component YP_003111665.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_1705 extracellular solute-binding protein, family 1 YP_003111666.1 PFAM: hypothetical protein; KEGG: sgr:SGR_1148 hypothetical protein YP_003111667.1 PFAM: DeoR family transcriptional regulator; SMART: DeoR family transcriptional regulator; KEGG: sco:SCO1043 transcriptional regulator YP_003111668.1 KEGG: sgr:SGR_4167 hypothetical protein YP_003111669.1 PFAM: NUDIX hydrolase; KEGG: sgr:SGR_3576 hypothetical protein YP_003111670.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_003111671.1 KEGG: stp:Strop_3941 hypothetical protein YP_003111672.1 PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO4637 hypothetical protein YP_003111673.1 PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase; KEGG: sgr:SGR_2881 UDP-N- acetylenolpyruvoylglucosamine reductase YP_003111674.1 PFAM: glycosyl transferase family 39; KEGG: fal:FRAAL0683 glycosyl transferase domain/kinase domain-containing protein YP_003111675.1 PFAM: GtrA family protein; glycosyl transferase family 2; KEGG: msm:MSMEG_4987 glycosyl transferase YP_003111676.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sgr:SGR_3956 two-component system sensor kinase YP_003111677.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sgr:SGR_3957 two-component systen response regulator YP_003111678.1 PFAM: TetR family transcriptional regulator; KEGG: ace:Acel_0290 TetR family transcriptional regulator YP_003111679.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_4904 transmembrane efflux protein YP_003111680.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_003111681.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_003111682.1 KEGG: sco:SCO4647 transcription antitermination protein; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; SMART: NGN domain protein; KOW domain protein YP_003111684.1 KEGG: ace:Acel_0295 50S ribosomal protein L11P; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11 YP_003111685.1 TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: nca:Noca_0697 50S ribosomal protein L1P YP_003111686.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sma:SAV_1786 MerR family transcriptional regulator YP_003111687.1 KEGG: sgr:SGR_5218 hypothetical protein YP_003111688.1 PFAM: ribosomal protein L10; KEGG: sgr:SGR_2871 50S ribosomal protein L10 YP_003111689.1 TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12; KEGG: sco:SCO4653 50S ribosomal protein L7/L12 YP_003111690.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_003111691.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_003111693.1 KEGG: rca:Rcas_2859 hypothetical protein YP_003111694.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_003111695.1 TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: fre:Franean1_6053 30S ribosomal protein S7 YP_003111696.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_003111697.1 KEGG: sma:SAV_4920 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein YP_003111698.1 KEGG: hypothetical protein YP_003111699.1 KEGG: fra:Francci3_2617 nucleic acid binding protein YP_003111700.1 TIGRFAM: prevent-host-death family protein YP_003111701.1 PFAM: monooxygenase FAD-binding; KEGG: scl:sce0981 oxidoreductase YP_003111702.1 KEGG: hypothetical protein LOC100024394 YP_003111703.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_003111704.1 PFAM: ribosomal protein L3; KEGG: sgr:SGR_2834 50S ribosomal protein L3 YP_003111705.1 PFAM: ribosomal protein L4/L1e; KEGG: sen:SACE_6835 50S ribosomal protein L4 YP_003111706.1 PFAM: ribosomal protein L25/L23; KEGG: tfu:Tfu_2644 50S ribosomal protein L23 YP_003111707.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_003111708.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: ace:Acel_0310 30S ribosomal protein S19P YP_003111709.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: fra:Francci3_0587 50S ribosomal protein L22 YP_003111710.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_003111711.1 TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16; KEGG: sgr:SGR_2827 50S ribosomal protein L16 YP_003111712.1 one of the stabilizing components for the large ribosomal subunit YP_003111713.1 PFAM: ribosomal protein S17; KEGG: rha:RHA1_ro06142 30S ribosomal protein S17 YP_003111714.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: ace:Acel_0316 50S ribosomal protein L14 YP_003111715.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_003111716.1 PFAM: ribosomal protein L5; KEGG: kra:Krad_0700 ribosomal protein L5 YP_003111717.1 PFAM: ribosomal protein S14; KEGG: sen:SACE_6823 30S ribosomal protein S14 YP_003111718.1 PFAM: ribosomal protein S8; KEGG: sco:SCO4716 30S ribosomal protein S8 YP_003111719.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_003111720.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: sma:SAV_4942 50S ribosomal protein L18 YP_003111721.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; ribosomal protein S5; KEGG: sco:SCO4719 30S ribosomal protein S5 YP_003111722.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_003111723.1 TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: sco:SCO4721 50S ribosomal protein L15 YP_003111724.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: sco:SCO4722 preprotein translocase subunit SecY YP_003111725.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_003111726.1 KEGG: nca:Noca_3883 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_003111727.1 KEGG: rha:RHA1_ro01075 hypothetical protein YP_003111728.1 KEGG: sco:SCO6666 integral membrane protein YP_003111729.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sco:SCO6667 two-component regulator YP_003111730.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sma:SAV_4453 two-component system sensor kinase YP_003111731.1 PFAM: protein of unknown function DUF1707; KEGG: sgr:SGR_4651 hypothetical protein YP_003111732.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_003111733.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_003111734.1 PFAM: ribosomal protein S13; KEGG: fal:FRAAL1107 30S ribosomal protein S13 YP_003111735.1 PFAM: ribosomal protein S11; KEGG: sgr:SGR_2808 30S ribosomal protein S11 YP_003111736.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_003111737.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_003111738.1 is a component of the macrolide binding site in the peptidyl transferase center YP_003111739.1 KEGG: sgr:SGR_2805 pseudouridine synthase; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_003111740.1 KEGG: hau:Haur_2943 hypothetical protein YP_003111741.1 PFAM: NADPH-dependent FMN reductase; KEGG: fra:Francci3_1652 NADPH-dependent FMN reductase YP_003111742.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_1878 ABC transporter ATP-binding protein YP_003111743.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_003111744.1 PFAM: ribosomal protein S9; KEGG: rsa:RSal33209_1736 SSU ribosomal protein S9P YP_003111745.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_003111746.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate YP_003111747.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: saq:Sare_4170 ABC transporter YP_003111748.1 KEGG: stp:Strop_3789 hypothetical protein YP_003111749.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: saq:Sare_4168 ABC transporter YP_003111750.1 KEGG: saq:Sare_4167 hypothetical protein YP_003111751.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rha:RHA1_ro06018 transcriptional regulator YP_003111752.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: sco:SCO4996 RNA polymerase ECF sigma factor YP_003111753.1 KEGG: nfa:nfa55130 hypothetical protein YP_003111754.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_003111755.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_003111756.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_003111757.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF- family domain protein; KEGG: sma:SAV_4965 hypothetical protein YP_003111758.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_2737 hypothetical protein YP_003111759.1 KEGG: sgr:SGR_2786 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_003111760.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sma:SAV_4968 hydrolase YP_003111761.1 PFAM: glycosyl transferase family 2; KEGG: mab:MAB_0505c glycosyl transferase YP_003111762.1 KEGG: mab:MAB_0504c hypothetical protein YP_003111763.1 PFAM: NAD-dependent epimerase/dehydratase; glycosyl transferase family 2; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short- chain dehydrogenase/reductase SDR; KEGG: art:Arth_2683 glycosyl transferase, family 2 YP_003111764.1 KEGG: ace:Acel_0442 hypothetical protein YP_003111765.1 KEGG: mab:MAB_0190c hypothetical protein YP_003111766.1 KEGG: cef:CE0352 hypothetical protein YP_003111767.1 PFAM: protein of unknown function UPF0079; KEGG: sma:SAV_4969 hypothetical protein YP_003111768.1 KEGG: sgr:SGR_2782 hypothetical protein YP_003111769.1 PFAM: peptidase M22 glycoprotease; KEGG: sco:SCO4750 hypothetical protein YP_003111770.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4751 acetyltransferase YP_003111771.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_003111772.1 KEGG: sen:SACE_2089 hypothetical protein YP_003111773.1 PFAM: polysaccharide deacetylase; KEGG: sgr:SGR_2772 polysaccharide deacetylase YP_003111775.1 KEGG: GG21708 gene product from transcript GG21708- RA YP_003111776.1 PFAM: chaperonin Cpn10; KEGG: sgr:SGR_2770 GroES YP_003111777.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_003111778.1 PFAM: transcription factor WhiB; KEGG: sco:SCO4767 regulatory protein YP_003111779.1 KEGG: C44E4.4; K11090 lupus La protein YP_003111780.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sgr:SGR_2759 two-component system response regulator YP_003111781.1 KEGG: sma:SAV_5000 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; SMART: CBS domain containing protein YP_003111782.1 TIGRFAM: IMP dehydrogenase family protein; KEGG: sma:SAV_5001 inositol-5-monophosphate dehydrogenase YP_003111783.1 PFAM: FAD dependent oxidoreductase; KEGG: sgr:SGR_2753 glycerol-3-phosphate dehydrogenase YP_003111784.1 PFAM: glutathione peroxidase; KEGG: rha:RHA1_ro04823 glutathione peroxidase YP_003111785.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: kra:Krad_0744 short-chain dehydrogenase/reductase SDR YP_003111786.1 KEGG: sde:Sde_0034 hypothetical protein YP_003111787.1 NADP-dependent semialdehyde dehydrogenase; part of alternative pathway from alpha-ketoglutarate to succinate YP_003111788.1 PFAM: protein of unknown function DUF909; KEGG: sen:SACE_6783 hypothetical protein YP_003111789.1 PFAM: protein of unknown function DUF909; KEGG: msm:MSMEG_1539 hypothetical protein YP_003111790.1 KEGG: sco:SCO4784 hypothetical protein YP_003111791.1 KEGG: rha:RHA1_ro02000 hypothetical protein YP_003111792.1 PFAM: thioesterase superfamily protein; KEGG: sma:SAV_7496 hypothetical protein YP_003111793.1 KEGG: mac:MA3844 hypothetical protein YP_003111794.1 PFAM: peptidase S41; SMART: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: rca:Rcas_2857 peptidase S41 YP_003111795.1 PFAM: protein of unknown function DUF214; KEGG: fre:Franean1_0086 hypothetical protein YP_003111796.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sgr:SGR_3133 ABC transporter ATP- binding protein YP_003111797.1 PFAM: peptidoglycan-binding protein; KEGG: fre:Franean1_0084 peptidoglycan binding domain-containing protein YP_003111798.1 KEGG: fre:Franean1_0083 hypothetical protein YP_003111799.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sma:SAV_2405 two-component system response regulator YP_003111800.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: mva:Mvan_3840 integral membrane sensor signal transduction histidine kinase YP_003111801.1 TIGRFAM: conserved repeat domain protein; LPXTG- motif cell wall anchor domain protein; KEGG: aby:ABAYE0792 hypothetical protein YP_003111802.1 KEGG: fre:Franean1_3726 GDSL family lipase YP_003111804.1 KEGG: hma:rrnAC2007 hypothetical protein YP_003111805.1 KEGG: sco:SCO4455 integral membrane protein YP_003111806.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO4454 transcriptional regulator YP_003111807.1 PFAM: ATP-NAD/AcoX kinase; KEGG: fal:FRAAL3438 inorganic polyphosphate/ATP-NAD kinase (poly(P)/ATP NAD kinase) YP_003111808.1 PFAM: methylenetetrahydrofolate reductase; KEGG: fre:Franean1_6374 methylenetetrahydrofolate reductase YP_003111810.1 PFAM: helix-turn-helix HxlR type; KEGG: msm:MSMEG_6580 transcriptional regulator family protein YP_003111811.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mva:Mvan_0234 short chain dehydrogenase YP_003111812.1 KEGG: mmi:MMAR_1029 lipase YP_003111813.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: stp:Strop_0077 ECF subfamily RNA polymerase sigma-24 factor YP_003111814.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: saq:Sare_0637 alcohol dehydrogenase YP_003111815.1 PFAM: TetR family transcriptional regulator; Tetracyclin repressor domain protein; KEGG: sma:SAV_488 TetR family transcriptional regulator YP_003111816.1 KEGG: sen:SACE_4642 hypothetical protein YP_003111817.1 KEGG: sco:SCO0432 secreted peptidase YP_003111818.1 KEGG: rha:RHA1_ro05190 hypothetical protein YP_003111819.1 PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 2 sugar binding; KEGG: sma:SAV_887 glycosyl hydrolase YP_003111820.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: sma:SAV_4946 preprotein translocase subunit SecY YP_003111821.1 KEGG: bam:Bamb_2360 cell divisionFtsK/SpoIIIE YP_003111822.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sgr:SGR_4062 RNA polymerase ECF-subfamily sigma factor YP_003111823.1 KEGG: similar to C6orf205 protein YP_003111824.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fal:FRAAL1328 RNA polymerase ECF-subfamily sigma factor YP_003111825.1 KEGG: mab:MAB_4143c anti-ECFsigma factor, ChrR YP_003111826.1 KEGG: sco:SCO7361 DNA-binding protein YP_003111827.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV_1633 sensor-like histidine kinase YP_003111828.1 PFAM: Roadblock/LC7 family protein; KEGG: sgr:SGR_934 hypothetical protein YP_003111829.1 PFAM: protein of unknown function DUF742; KEGG: sma:SAV_1631 hypothetical protein YP_003111830.1 PFAM: protein of unknown function ATP binding; KEGG: sgr:SGR_6129 ATP/GTP-binding protein YP_003111831.1 PFAM: GAF domain protein; KEGG: sma:SAV_1629 hypothetical protein YP_003111832.1 PFAM: TAP domain protein; alpha/beta hydrolase fold protein; KEGG: sen:SACE_3239 proteinase (secreted protein) YP_003111833.1 KEGG: fre:Franean1_0632 hypothetical protein YP_003111834.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: fre:Franean1_5616 LuxR family transcriptional regulator YP_003111835.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: saq:Sare_3935 deaminase-reductase domain- containing protein YP_003111836.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_4760 transmembrane efflux protein YP_003111837.1 PFAM: AIG2 family protein; peptidase M24; KEGG: fal:FRAL5309 hypothetical protein YP_003111838.1 PFAM: indole-3-glycerol phosphate synthase; KEGG: ace:Acel_1073 indole-3-glycerol phosphate synthase YP_003111839.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mab:MAB_0023 LysR family transcriptional regulator YP_003111840.1 TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; KEGG: pau:PA14_03130 hypothetical protein YP_003111841.1 KEGG: fre:Franean1_1863 hypothetical protein YP_003111842.1 KEGG: aoe:Clos_0772 phosphotransferase (aminonucleoside antibiotic resistance) YP_003111843.1 PFAM: protein of unknown function DUF1470; KEGG: mgi:Mflv_4849 hypothetical protein YP_003111844.1 PFAM: alpha/beta hydrolase fold protein; KEGG: bpy:Bphyt_7174 alpha/beta hydrolase fold protein YP_003111845.1 KEGG: bur:Bcep18194_A4030 hypothetical protein YP_003111846.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ank:AnaeK_3239 short-chain dehydrogenase/reductase SDR YP_003111847.1 PFAM: tryptophan 23-dioxygenase; KEGG: sgr:SGR_3414 tryptophan 2,3- dioxygenase YP_003111848.1 PFAM: aldo/keto reductase; KEGG: saq:Sare_1764 aldo/keto reductase YP_003111849.1 KEGG: pna:Pnap_0127 poly (3-hydroxybutyrate) depolymerase YP_003111850.1 PFAM: monooxygenase FAD-binding; KEGG: sma:SAV_2835 polyketide hydroxylase YP_003111851.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: sma:SAV_2836 WhiE I-like protein YP_003111852.1 PFAM: cupin; KEGG: sma:SAV_2837 WhiE II-like protein YP_003111853.1 PFAM: beta-ketoacyl synthase; KEGG: sma:SAV_2838 3-oxoacyl-ACP synthase I YP_003111854.1 PFAM: beta-ketoacyl synthase; KEGG: sma:SAV_2839 3-oxoacyl-ACP synthase II, chain length factor YP_003111855.1 KEGG: sma:SAV_2840 acyl carrier protein YP_003111856.1 PFAM: cyclase/dehydrase; KEGG: sma:SAV_2841 cyclase I YP_003111857.1 PFAM: polyketide synthesis cyclase; KEGG: sma:SAV_2842 cyclase II YP_003111858.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit beta; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase subunit alpha; carboxyl transferase; KEGG: fre:Franean1_3951 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_003111859.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: fre:Franean1_3950 biotin/lipoyl attachment domain-containing protein YP_003111860.1 PFAM: carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; RimK domain protein ATP-grasp; phosphoribosylglycinamide synthetase; carbamoyl-phosphate synthetase large chain domain protein; KEGG: fre:Franean1_3949 carbamoyl-phosphate synthase L chain ATP-binding YP_003111861.1 KEGG: sen:SACE_1969 twin-arginine translocation pathway signal YP_003111862.1 PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; ATPase AAA; KEGG: fal:FRAAL0335 LuxR family transcriptional regulator YP_003111864.1 PFAM: thioesterase; KEGG: sen:SACE_4286 thioesterase YP_003111865.1 TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; phosphocarrier, HPr family; PFAM: PTS system fructose subfamily IIA component; phosphoryl transfer system HPr; KEGG: dvl:Dvul_2007 phosphoenolpyruvate-protein phosphotransferase YP_003111866.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: sen:SACE_5292 glycerol operon regulatory protein YP_003111867.1 PFAM: major intrinsic protein; KEGG: msm:MSMEG_2124 glycerol uptake facilitator, MIP channel YP_003111868.1 KEGG: msm:MSMEG_2123 dihydroxyacetone kinase, DhaK subunit; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase YP_003111869.1 TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: sco:SCO7072 hypothetical protein YP_003111870.1 PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: hau:Haur_1528 phosphoenolpyruvate-protein phosphotransferase YP_003111871.1 PFAM: aldo/keto reductase; KEGG: sco:SCO1569 oxidoreductase YP_003111872.1 PFAM: Dak kinase; Dak phosphatase; KEGG: kra:Krad_4000 glycerone kinase YP_003111873.1 KEGG: sgr:SGR_4746 hypothetical protein YP_003111874.1 PFAM: oxidoreductase domain protein; semialdehyde dehydrogenase NAD - binding; oxidoreductase domain; KEGG: sco:SCO2847 oxidoreductase YP_003111875.1 PFAM: ROK family protein; KEGG: sco:SCO2846 transcriptional regulator YP_003111876.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: sgr:SGR_4485 hypothetical protein YP_003111877.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: fra:Francci3_2808 hypothetical protein YP_003111878.1 KEGG: rha:RHA1_ro07127 ArsR family transcriptional regulator YP_003111879.1 KEGG: hypothetical protein YP_003111881.1 PFAM: alpha/beta hydrolase fold protein; KEGG: hau:Haur_4401 alpha/beta hydrolase fold protein YP_003111883.1 KEGG: dac:Daci_1499 hypothetical protein YP_003111884.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: pth:PTH_2591 hypothetical protein YP_003111885.1 KEGG: sgr:SGR_3048 hypothetical protein YP_003111886.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ace:Acel_1406 peptidase S9 prolyl oligopeptidase YP_003111887.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: sco:SCO6529 ATP/GTP binding protein YP_003111888.1 KEGG: sco:SCO6530 hypothetical protein YP_003111889.1 PFAM: secretory lipase; KEGG: bur:Bcep18194_B0085 triacylglycerol lipase YP_003111890.1 KEGG: sco:SCO1215 integral membrane protein YP_003111891.1 KEGG: rha:RHA1_ro10052 hypothetical protein YP_003111892.1 PFAM: nuclear export factor GLE1; KEGG: sma:SAV_2334 hypothetical protein YP_003111893.1 PFAM: copper resistance protein CopC; copper resistance D domain protein; KEGG: sgr:SGR_3627 integral membrane protein YP_003111896.1 KEGG: sco:SCO4361 integral membrane protein YP_003111897.1 PFAM: beta-lactamase; KEGG: aba:acid345_2615 uncharacterised conserved protein UCP016719 YP_003111898.1 PFAM: FAD linked oxidase; Berberine/berberine domain protein; KEGG: rxy:Rxyl_3087 FAD linked oxidase-like protein YP_003111899.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sco:SCO6321 integral membrane protein YP_003111900.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_4271 TetR family transcriptional regulator YP_003111901.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: fal:FRAAL3355 transcriptional regulator YP_003111902.1 PFAM: aldo/keto reductase; KEGG: gox:GOX2371 oxidoreductase YP_003111903.1 PFAM: protein of unknown function DUF156; KEGG: sco:SCO0620 hypothetical protein YP_003111904.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; heat shock protein DnaJ domain protein; SMART: serine/threonine protein kinase; von Willebrand factor type A; tyrosine protein kinase; KEGG: sco:SCO2668 hypothetical protein YP_003111905.1 PFAM: protein of unknown function DUF574; KEGG: fra:Francci3_1840 hypothetical protein YP_003111906.1 KEGG: nmu:Nmul_A0853 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003111908.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_003111909.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO7584 transcriptional regulator YP_003111910.1 KEGG: nfa:nfa31350 hypothetical protein YP_003111911.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sgr:SGR_3466 D-alanyl-D-alanine carboxypeptidase YP_003111912.1 KEGG: mab:MAB_2956 hypothetical protein YP_003111913.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV_1383 hydrolase YP_003111914.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: sen:SACE_3868 enoyl-CoA hydratase/isomerase YP_003111915.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rha:RHA1_ro01501 3-oxoacyl-[acyl-carrier- protein] reductase YP_003111916.1 PFAM: aminoglycoside phosphotransferase; KEGG: rha:RHA1_ro01502 hypothetical protein YP_003111917.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_003111918.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: rha:RHA1_ro02696 acyl-CoA dehydrogenase YP_003111919.1 PFAM: TetR family transcriptional regulator; KEGG: sma:SAV_1382 TetR family transcriptional regulator YP_003111921.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: sgr:SGR_500 acyl-CoA dehydrogenase YP_003111922.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sco:SCO1198 acyl-CoA dehydrogenase YP_003111923.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sma:SAV_4773 LysR family transcriptional regulator YP_003111924.1 PFAM: ThiJ/PfpI domain protein; KEGG: sma:SAV_4772 DJ-1/PfpI family transcriptional regulator YP_003111925.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; KEGG: nfa:nfa52670 dehydrogenase YP_003111926.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: nfa:nfa26040 hypothetical protein YP_003111927.1 PFAM: aldo/keto reductase; KEGG: mab:MAB_1528c oxidoreductase YP_003111928.1 KEGG: sma:SAV_7555 hypothetical protein YP_003111929.1 PFAM: oxidoreductase domain protein; KEGG: sco:SCO1337 oxidoreductase YP_003111930.1 PFAM: ion transport 2 domain protein; KEGG: sco:SCO5963 hypothetical protein YP_003111931.1 PFAM: SNARE associated Golgi protein; KEGG: art:Arth_0238 DedA family protein YP_003111932.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_2262 serine/threonine protein kinase YP_003111933.1 PFAM: protein of unknown function DUF214; KEGG: sgr:SGR_4859 hypothetical protein YP_003111934.1 KEGG: sgr:SGR_4858 hypothetical protein YP_003111935.1 KEGG: sgr:SGR_948 hypothetical protein YP_003111936.1 KEGG: sgr:SGR_949 hypothetical protein YP_003111937.1 KEGG: sgr:SGR_950 hypothetical protein YP_003111938.1 KEGG: sgr:SGR_951 hypothetical protein YP_003111939.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_003111940.1 PFAM: radical SAM protein; KEGG: sgr:SGR_953 hypothetical protein YP_003111941.1 KEGG: sgr:SGR_946 hypothetical protein YP_003111942.1 KEGG: sgr:SGR_947 hypothetical protein YP_003111943.1 PFAM: ROK family protein; KEGG: lbr:LVIS_2120 transcriptional regulator/sugar kinase YP_003111944.1 PFAM: extracellular solute-binding protein family 5; KEGG: hau:Haur_2397 extracellular solute-binding protein YP_003111945.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: llm:llmg_1459 di/TRI-peptide transport system permease YP_003111946.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sit:TM1040_2743 binding-protein-dependent transport systems inner membrane component YP_003111947.1 KEGG: scl:sce4299 peptide ABC transporter ATP- binding protein; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003111948.1 KEGG: scl:sce4298 ABC-type oligopeptide transporter, ATPase component; TIGRFAM: peptide ABC transporter ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003111949.1 PFAM: ROK family protein; KEGG: sma:SAV_1222 transcriptional regulator YP_003111950.1 PFAM: zinc finger SWIM domain protein; KEGG: sco:SCO1291 hypothetical protein YP_003111951.1 KEGG: sco:SCO1292 secreted protein YP_003111952.1 KEGG: cau:Caur_0201 beta strand repeat-containing protein YP_003111953.1 PFAM: ADP-ribosylation/crystallin J1; KEGG: sgr:SGR_1711 hydrolase YP_003111954.1 PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0984 major facilitator transporter YP_003111955.1 PFAM: filamentation induced by cAMP protein Fic YP_003111956.1 KEGG: cmi:CMM_0528 metal-dependent hydrolase YP_003111957.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); defense mechanism against a harmful effect of D-tyrosine YP_003111958.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sen:SACE_5519 serine protease membrane protein YP_003111959.1 PFAM: protein of unknown function DUF885; KEGG: stp:Strop_0196 hypothetical protein YP_003111960.1 PFAM: transcriptional regulator PadR family protein; KEGG: stp:Strop_0895 transcriptional regulator PadR family protein YP_003111961.1 KEGG: stp:Strop_0896 hypothetical protein YP_003111962.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ace:Acel_0627 response regulator receiver protein YP_003111963.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_003111964.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: sgr:SGR_2183 diaminopimelate decarboxylase YP_003111965.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_003111966.1 TIGRFAM: threonine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: sco:SCO5355 threonine synthase YP_003111967.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_003111968.1 KEGG: sgr:SGR_2179 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; Rho termination factor domain protein; Rho termination factor RNA-binding; SMART: ATPase AAA; Cold shock protein YP_003111969.1 PFAM: dienelactone hydrolase; BAAT/acyl-CoA thioester hydrolase; KEGG: mxa:MXAN_0913 hypothetical protein YP_003111970.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: tfu:Tfu_2420 50S ribosomal protein L31 YP_003111971.1 TIGRFAM: peptide chain release factor 1; PFAM: class I peptide chain release factor; PCRF domain protein; KEGG: sma:SAV_2912 peptide chain release factor 1 YP_003111972.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: sco:SCO5361 methylase YP_003111973.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: sgr:SGR_2174 hypothetical protein YP_003111974.1 KEGG: mkm:Mkms_5104 hypothetical protein YP_003111975.1 PFAM: glycosyl transferase family 4; KEGG: sco:SCO5365 transferase YP_003111976.1 KEGG: sco:SCO5366 ATP synthase protein I YP_003111977.1 KEGG: nca:Noca_1756 hypothetical protein YP_003111978.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_003111979.1 TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: sgr:SGR_2168 ATP synthase C chain YP_003111980.1 TIGRFAM: ATP synthase F0 subunit beta; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: sgr:SGR_2167 ATP synthase B chain YP_003111981.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit delta is part of the catalytic core of the ATP synthase complex YP_003111982.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_003111983.1 KEGG: sgr:SGR_2164 ATP synthase gamma chain; TIGRFAM: ATP synthase F1 subunit gamma; PFAM: H+transporting two-sector ATPase subunit gamma YP_003111984.1 KEGG: sco:SCO5373 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1 subunit beta; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA YP_003111985.1 TIGRFAM: ATP synthase F1 subunit epsilon; PFAM: H+transporting two-sector ATPase delta/subunit epsilon; KEGG: nca:Noca_1764 F0F1 ATP synthase subunit epsilon YP_003111986.1 KEGG: sma:SAV_2879 hypothetical protein YP_003111987.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: nca:Noca_1770 ATP:cob(I)alamin adenosyltransferase YP_003111988.1 KEGG: proteophosphoglycan 5 YP_003111989.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_003111990.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; dihydrodipicolinate reductase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sco:SCO5385 3-hydroxybutyryl-CoA dehydrogenase YP_003111991.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_6972 membrane transporter YP_003111992.1 KEGG: sgr:SGR_1171 methylmalonyl-CoA mutase subunit alpha; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12- binding domain protein YP_003111995.1 PFAM: protein of unknown function DUF91; KEGG: sma:SAV_2867 hypothetical protein YP_003111996.1 TIGRFAM: hypothetical protein; KEGG: stp:Strop_1054 YD repeat-containing protein YP_003111997.1 KEGG: sco:SCP1.273c large secreted protein YP_003111998.1 KEGG: sen:SACE_5672 hypothetical protein YP_003111999.1 PFAM: regulatory protein LysR; KEGG: cmi:CMM_1522 LysR family transcriptional regulator YP_003112000.1 PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: stp:Strop_4244 transcriptional activator domain-containing protein YP_003112001.1 KEGG: sma:SAV_2866 hypothetical protein YP_003112002.1 PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO5390 alkanal monooxygenase (luciferase) YP_003112003.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: nca:Noca_1784 3-hydroxyacyl-CoA dehydrogenase YP_003112004.1 KEGG: sen:SACE_6244 hypothetical protein YP_003112005.1 PFAM: methyltransferase type 11; KEGG: sen:SACE_5163 hypothetical protein YP_003112006.1 PFAM: sodium/calcium exchanger membrane region; KEGG: mca:MCA0142 calcium/proton exchanger YP_003112007.1 KEGG: stp:Strop_2174 hypothetical protein YP_003112008.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: stp:Strop_2175 ABC transporter YP_003112009.1 PFAM: ABC transporter; KEGG: fal:FRAAL2980 ABC transporter transmembrane protein YP_003112010.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: art:Arth_4137 ABC transporter YP_003112011.1 KEGG: saq:Sare_3998 hypothetical protein YP_003112012.1 KEGG: sgr:SGR_509 hypothetical protein YP_003112013.1 PFAM: protein of unknown function UPF0118; KEGG: nca:Noca_1793 hypothetical protein YP_003112014.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; regulatory protein LuxR; sigma-70 region 4 domain protein; KEGG: fre:Franean1_0089 ECF subfamily RNA polymerase sigma-24 factor YP_003112015.1 KEGG: kra:Krad_3401 hypothetical protein YP_003112016.1 KEGG: sgr:SGR_2141 cellulose-binding protein YP_003112017.1 PFAM: Apolipoprotein A1/A4/E; KEGG: sgr:SGR_2140 large Ala/Glu-rich protein YP_003112018.1 TIGRFAM: crotonyl-CoA reductase; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sgr:SGR_1170 crotonyl CoA reductase YP_003112019.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_3130 acetyltransferase YP_003112020.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sma:SAV_5747 two-component system response regulator YP_003112021.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sma:SAV_5746 two-component system sensor kinase YP_003112022.1 PFAM: monogalactosyldiacylglycerol synthase; KEGG: stp:Strop_0647 UDP-N-acetylglucosamine:LPS N- acetylglucosamine transferase-like protein YP_003112023.1 PFAM: polysaccharide deacetylase; KEGG: fre:Franean1_5514 polysaccharide deacetylase YP_003112024.1 TIGRFAM: methylmalonyl-CoA epimerase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV_2857 hypothetical protein YP_003112025.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_003112026.1 TIGRFAM: LAO/AO transporter ATPase; PFAM: ArgK protein; KEGG: sma:SAV_2855 lysine arginine ornithine transporter kinase YP_003112027.1 KEGG: sen:SACE_5937 glyoxalase/bleomycin resistance protein/dioxygenase YP_003112028.1 KEGG: lbf:LBF_2669 hypothetical protein YP_003112029.1 KEGG: fal:FRAAL5957 hypothetical protein YP_003112030.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sgr:SGR_4273 MarR family transcriptional regulator YP_003112031.1 PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_1339 major facilitator superfamily permease YP_003112032.1 PFAM: beta-lactamase; KEGG: hma:rrnAC1970 hypothetical protein YP_003112034.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_003112035.1 PFAM: Luciferase-like monooxygenase; KEGG: msm:MSMEG_2307 hypothetical protein YP_003112036.1 PFAM: Ig family protein; KEGG: sma:SAV_5630 neutral zinc metalloprotease YP_003112037.1 PFAM: peptidase M16 domain protein; KEGG: saq:Sare_3947 peptidase M16 domain-containing protein YP_003112038.1 PFAM: peptidase M16 domain protein; KEGG: saq:Sare_3948 peptidase M16 domain-containing protein YP_003112039.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sco:SCO5413 MarR-transcriptional regulator YP_003112040.1 KEGG: sco:SCO5415 isobutyryl-CoA mutase A; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase YP_003112041.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_2119 TetR family transcriptional regulator YP_003112042.1 PFAM: thioredoxin domain; glutaredoxin 2; KEGG: sgr:SGR_2118 thioredoxin YP_003112044.1 KEGG: sgr:SGR_2116 cholesterol esterase YP_003112045.1 KEGG: cur:cur_0164 secreted protein YP_003112046.1 KEGG: proteophosphoglycan 5 YP_003112047.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: tfu:Tfu_0590 short chain enoyl-CoA hydratase YP_003112048.1 KEGG: afe:Lferr_1683 hypothetical protein YP_003112049.1 PFAM: protein of unknown function DUF74; KEGG: afe:Lferr_1683 hypothetical protein YP_003112050.1 KEGG: afe:Lferr_1685 hypothetical protein YP_003112051.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_2769 ABC transporter permease YP_003112052.1 PFAM: extracellular solute-binding protein family 5; KEGG: sma:SAV_2768 ABC transporter substrate-binding protein YP_003112053.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_2767 ABC transporter permease YP_003112054.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: tfu:Tfu_1822 oligopeptide transport integral membrane protein YP_003112055.1 PFAM: extracellular solute-binding protein family 5; KEGG: sma:SAV_2768 ABC transporter substrate-binding protein YP_003112056.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: tfu:Tfu_1820 peptide transporter permease YP_003112057.1 KEGG: sma:SAV_2766 ABC transporter ATP-binding protein; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003112058.1 KEGG: sco:SCO5480 oligopeptide ABC transporter ATP- binding protein; TIGRFAM: peptide ABC transporter ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003112060.1 KEGG: sen:SACE_1923 hypothetical protein YP_003112061.1 KEGG: scl:sce3123 protein kinase YP_003112063.1 PFAM: electron transfer flavoprotein alpha/beta- subunit; KEGG: tfu:Tfu_0593 electron transfer flavoprotein subunit beta YP_003112064.1 PFAM: electron transfer flavoprotein subunit alpha; electron transfer flavoprotein alpha/beta-subunit; KEGG: fal:FRAAL5877 electron transfer flavoprotein subunit alpha YP_003112065.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: nfa:nfa23650 serine/threonine protein kinase YP_003112066.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: fre:Franean1_0818 membrane bound O-acyl transferase MBOAT family protein YP_003112067.1 KEGG: fre:Franean1_0817 hypothetical protein YP_003112068.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sgr:SGR_2029 pyridoxal-phosphate- dependent aminotransferase YP_003112069.1 PFAM: protein of unknown function UPF0066; KEGG: ccr:CC_0120 hypothetical protein YP_003112071.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro01381 ferredoxin--NAD(+) reductase YP_003112072.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_003112073.1 PFAM: penicillin-binding protein transpeptidase; KEGG: sco:SCO3156 penicillin-binding protein (secreted protein) YP_003112074.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fre:Franean1_1981 MarR family transcriptional regulator YP_003112075.1 PFAM: NADPH-dependent FMN reductase; KEGG: bbr:BB2827 reductase YP_003112076.1 KEGG: scl:sce0608 hypothetical protein YP_003112077.1 PFAM: methionine synthase vitamin-B12 independent; KEGG: tfu:Tfu_0602 hypothetical protein YP_003112078.1 KEGG: sma:SAV_2748 NAD-dependent DNA ligase LigA; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; helix-hairpin-helix motif; zinc-finger NAD- dependent DNA ligase C4-type; NAD-dependent DNA ligase OB- fold; SMART: NAD-dependent DNA ligase; BRCT domain protein YP_003112079.1 KEGG: sgr:SGR_2020 phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003112080.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: stp:Strop_2922 PhzF family phenazine biosynthesis protein YP_003112081.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: saq:Sare_0798 serine/threonine protein kinase YP_003112082.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: sgr:SGR_2019 glutamyl-tRNA amidotransferase subunit C YP_003112083.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_003112085.1 PFAM: SMC domain protein; KEGG: gvi:gll3851 hypothetical protein YP_003112086.1 KEGG: scl:sce0821 hypothetical protein YP_003112087.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_003112088.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: nfa:nfa35090 dehydrogenase YP_003112089.1 PFAM: protein of unknown function UPF0099; KEGG: sco:SCO6046 hypothetical protein YP_003112090.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: sma:SAV_6842 peptidyl-prolyl cis-trans isomerase YP_003112091.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sgr:SGR_6656 oxidoreductase YP_003112092.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: cbe:Cbei_2675 coagulation factor 5/8 type domain protein YP_003112093.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: sma:SAV_5252 sugar hydrolase YP_003112094.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sma:SAV_2114 LacI family transcriptional regulator YP_003112095.1 KEGG: sgr:SGR_2252 hypothetical protein YP_003112096.1 KEGG: sgr:SGR_4858 hypothetical protein YP_003112097.1 PFAM: protein of unknown function DUF214; KEGG: sco:SCO2672 hypothetical protein YP_003112098.1 KEGG: sma:SAV_727 hypothetical protein YP_003112099.1 PFAM: lipolytic protein G-D-S-L family YP_003112100.1 PFAM: hypothetical protein; DeoR family transcriptional regulator; KEGG: nfa:nfa51350 transcriptional regulator YP_003112101.1 KEGG: cyt:cce_2626 hypothetical protein YP_003112102.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_003112103.1 PFAM: fumarylacetoacetate hydrolase; KEGG: sgr:SGR_1933 fumarylacetoacetate hydrolase family protein YP_003112104.1 PFAM: conserved hypothetical protein; KEGG: cms:CMS_2337 integral membrane protein YP_003112105.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sgr:SGR_5895 LysR family transcriptional regulator YP_003112106.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: sma:SAV_7347 thioredoxin YP_003112107.1 KEGG: sco:SCO5969 hypothetical protein YP_003112108.1 KEGG: saq:Sare_1079 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003112109.1 PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; glycoside hydrolase family 38 central region; KEGG: stp:Strop_1191 glycoside hydrolase family protein YP_003112110.1 KEGG: stp:Strop_1435 hypothetical protein YP_003112111.1 KEGG: fal:FRAAL5957 hypothetical protein YP_003112112.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_372 TetR family transcriptional regulator YP_003112113.1 KEGG: sgr:SGR_371 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1 YP_003112114.1 KEGG: sco:SCO0909 hypothetical protein YP_003112115.1 KEGG: fre:Franean1_4146 hypothetical protein YP_003112116.1 KEGG: sma:SAV_875 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold protein YP_003112117.1 TIGRFAM: kynureninase; PFAM: aminotransferase class V; KEGG: art:Arth_1432 kynureninase YP_003112118.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: rha:RHA1_ro02297 acyl CoA dehydrogenase YP_003112119.1 KEGG: sco:SCO2803 hypothetical protein YP_003112120.1 KEGG: predicted gene, 100041170 YP_003112121.1 KEGG: sen:SACE_3200 hypothetical protein YP_003112122.1 KEGG: sma:SAV_3024 hypothetical protein YP_003112123.1 PFAM: Na+/solute symporter; KEGG: sco:SCO5229 permease YP_003112124.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: fal:FRAAL2829 acyl-CoA dehydrogenase YP_003112125.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: sen:SACE_3140 hypothetical protein YP_003112126.1 PFAM: transcriptional regulator PadR family protein; KEGG: rha:RHA1_ro02485 PadR family transcriptional regulator YP_003112127.1 KEGG: sma:SAV_5814 lipoprotein YP_003112128.1 KEGG: sma:SAV_5814 lipoprotein YP_003112129.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: nca:Noca_2770 acyl-CoA dehydrogenase domain- containing protein YP_003112130.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nca:Noca_2769 acyl-CoA dehydrogenase domain- containing protein YP_003112131.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nfa:nfa4840 acyl-CoA dehydrogenase YP_003112132.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nca:Noca_2766 short chain dehydrogenase YP_003112133.1 PFAM: TetR family transcriptional regulator; KEGG: rha:RHA1_ro04598 transcriptional regulator YP_003112134.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_003112136.1 KEGG: fra:Francci3_1250 hypothetical protein YP_003112137.1 PFAM: fatty acid desaturase; KEGG: fre:Franean1_2192 alkane 1-monooxygenase YP_003112138.1 KEGG: sma:SAV_6119 phospho-N-acetylmuramoyl- pentapeptide-transferase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-transf erase; PFAM: glycosyl transferase family 4 YP_003112139.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: fre:Franean1_2183 hemerythrin HHE cation binding domain-containing protein YP_003112140.1 PFAM: hypothetical protein; DeoR family transcriptional regulator; KEGG: fre:Franean1_1647 helix-turn-helix type 11 domain-containing protein YP_003112141.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO2876 acetyltransferase YP_003112142.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: mav:MAV_0607 oxidoreductase, 2-nitropropane dioxygenase family protein YP_003112143.1 PFAM: coenzyme A transferase; KEGG: saq:Sare_2805 coenzyme A transferase YP_003112144.1 PFAM: coenzyme A transferase; KEGG: stp:Strop_2605 coenzyme A transferase YP_003112145.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_003112146.1 KEGG: spn:SP_1772 cell wall surface anchor family protein YP_003112147.1 KEGG: saq:Sare_4550 daunorubicin resistance ABC transporter ATPase; TIGRFAM: daunorubicin resistance ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003112148.1 PFAM: ABC transporter; KEGG: sen:SACE_0423 multidrug ABC transporter permease YP_003112149.1 PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; transcriptional regulator; KEGG: nfa:nfa34460 transcriptional regulator YP_003112150.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rha:RHA1_ro04653 short chain dehydrogenase YP_003112151.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rha:RHA1_ro04654 short chain dehydrogenase YP_003112152.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: sma:SAV_6842 peptidyl-prolyl cis-trans isomerase YP_003112153.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fal:FRAAL1328 RNA polymerase ECF-subfamily sigma factor YP_003112154.1 PFAM: penicillin-binding protein transpeptidase; KEGG: sgr:SGR_4647 penicillin-binding protein YP_003112155.1 PFAM: protein of unknown function DUF885; KEGG: nth:Nther_2188 protein of unknown function DUF885 YP_003112156.1 PFAM: protein of unknown function DUF1503; KEGG: sen:SACE_1859 hypothetical protein YP_003112157.1 KEGG: sma:SAV_3423 integral membrane protein YP_003112158.1 PFAM: SNARE associated Golgi protein; KEGG: ace:Acel_0915 hypothetical protein YP_003112159.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: sgr:SGR_2315 hypothetical protein YP_003112160.1 TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: sma:SAV_3050 fructose-1,6-bisphosphatase YP_003112161.1 KEGG; K01855 YP_003112162.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO5209 TetR family transcriptional regulator YP_003112163.1 KEGG: sgr:SGR_2207 hypothetical protein YP_003112164.1 KEGG: rha:RHA1_ro00016 hypothetical protein YP_003112165.1 KEGG: sen:SACE_5456 cytoplasmic protein YP_003112166.1 PFAM: Forkhead-associated protein; cell divisionFtsK/SpoIIIE; SMART: Forkhead-associated protein; KEGG: ace:Acel_1741 FHA domain-containing protein YP_003112167.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_5100 serine/threonine protein kinase YP_003112168.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sco:SCO2973 serine/threonine protein kinase YP_003112169.1 TIGRFAM: peptide chain release factor 2; PFAM: class I peptide chain release factor; PCRF domain protein; KEGG: sgr:SGR_4555 peptide chain release factor 2 YP_003112170.1 KEGG: fre:Franean1_5793 hypothetical protein YP_003112171.1 KEGG: sgr:SGR_4558 cell division ATP- binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase AAA YP_003112172.1 PFAM: protein of unknown function DUF214; KEGG: sgr:SGR_4559 cell division protein YP_003112173.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: ace:Acel_1728 SsrA-binding protein YP_003112174.1 KEGG: nca:Noca_2278 sigma-70 region 4 domain- containing protein YP_003112175.1 KEGG: nca:Noca_2279 hypothetical protein YP_003112176.1 PFAM: type III restriction protein res subunit; helicase domain protein; restriction endonuclease; SMART: DEAD-like helicases; helicase domain protein; KEGG: nca:Noca_2280 type III restriction enzyme, res subunit YP_003112177.1 KEGG: nca:Noca_2281 hypothetical protein YP_003112178.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: nca:Noca_2284 DNA-cytosine methyltransferase YP_003112179.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: mjl:Mjls_0823 DNA mismatch endonuclease vsr YP_003112180.1 KEGG: afe:Lferr_1683 hypothetical protein YP_003112181.1 PFAM: aldo/keto reductase; KEGG: sme:SMc04056 oxidoreductase protein YP_003112182.1 KEGG: rha:RHA1_ro01075 hypothetical protein YP_003112183.1 KEGG: mac:MA0487 hypothetical protein YP_003112184.1 KEGG: sen:SACE_7298 hypothetical protein YP_003112185.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sma:SAV_86 erythropoiesis-stimulating protein YP_003112186.1 KEGG: sco:SCO0445 secreted protein YP_003112187.1 PFAM: Limonene-12-epoxide hydrolase; KEGG: fal:FRAAL3597 delta-5-3-ketosteroid isomerase- like protein (fragment) (partial match) YP_003112188.1 PFAM: ATPase; DUF234 DEXX-box ATPase; KEGG: nfa:nfa47810 hypothetical protein YP_003112189.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_003112190.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sma:SAV_6340 ECF subfamily RNA polymerase sigma factor YP_003112191.1 KEGG: sgr:SGR_4268 hypothetical protein YP_003112192.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: bcz:BCZK2527 ubiquinone/menaquinone biosynthesis methyltransferase YP_003112193.1 KEGG: rha:RHA1_ro03132 hypothetical protein YP_003112194.1 PFAM: NUDIX hydrolase; KEGG: sen:SACE_3520 hypothetical protein YP_003112195.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; KEGG: msm:MSMEG_6843 NAD-dependent epimerase/dehydratase YP_003112196.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: saq:Sare_3489 LacI family transcription regulator YP_003112197.1 PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 42 domain 5 loop region; KEGG: kra:Krad_3466 glycoside hydrolase family protein YP_003112198.1 KEGG: dge:Dgeo_2697 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003112199.1 PFAM: PspA/IM30 family protein; KEGG: sgr:SGR_5341 phage shock protein A YP_003112200.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sen:SACE_3810 integral membrane protein YP_003112201.1 PFAM: alpha/beta hydrolase fold protein; KEGG: bph:Bphy_3921 alpha/beta hydrolase fold protein protein YP_003112202.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mbn:Mboo_0261 peptidase M20 YP_003112203.1 PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_373 major facilitator superfamily permease YP_003112204.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: aau:AAur_0159 type I phosphodiesterase / nucleotide pyrophosphatase family protein YP_003112205.1 PFAM: beta-lactamase; KEGG: sma:SAV_5576 ribonuclease Z YP_003112206.1 PFAM: TetR family transcriptional regulator; KEGG: sen:SACE_2879 TetR family transcriptional regulator YP_003112207.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: gsu:GSU2516 rhodanese-like domain-containing protein YP_003112208.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: sen:SACE_3978 cyclic nucleotide-binding domain-containing protein YP_003112209.1 PFAM: carbohydrate-binding CenC domain protein; KEGG: sco:SCO6012 secreted chitinase (secreted protein) YP_003112210.1 KEGG: sco:SCO3774 beta-lactamase related protein YP_003112211.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO3773 LysR family transcriptional regulator YP_003112212.1 PFAM: penicillin-binding protein transpeptidase; NTF2 domain protein transpeptidase; KEGG: sco:SCO3156 penicillin-binding protein (secreted protein) YP_003112213.1 PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: sma:SAV_819 lipase YP_003112214.1 PFAM: antibiotic biosynthesis monooxygenase; globin; KEGG: sma:SAV_3316 hypothetical protein YP_003112215.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sgr:SGR_3670 DNA-damage-inducible protein F YP_003112216.1 KEGG: tfu:Tfu_2256 hypothetical protein YP_003112217.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sma:SAV_6651 GntR family transcriptional regulator YP_003112218.1 PFAM: inner-membrane translocator; KEGG: bxe:Bxe_B2962 ABC sugar transporter inner membrane subunit YP_003112219.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_7280 sugar ABC transporter ATP- binding protein YP_003112220.1 KEGG: sma:SAV_7279 sugar ABC transporter substrate- binding protein YP_003112221.1 PFAM: fumarylacetoacetate hydrolase; KEGG: sen:SACE_3938 2-hydroxyhepta-2,4- diene-1,7-dioate isomerase YP_003112222.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: sma:SAV_7282 mandelate racemase YP_003112223.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sma:SAV_7283 dehydrogenase YP_003112224.1 KEGG: Os01g0919200; hypothetical protein YP_003112225.1 PFAM: aldo/keto reductase; KEGG: sma:SAV_7284 oxidoreductase YP_003112226.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: sen:SACE_3507 CoB--CoM heterodisulfide reductase YP_003112227.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: mgi:Mflv_3703 iron-sulfur cluster binding protein YP_003112228.1 PFAM: protein of unknown function DUF162; KEGG: sco:SCO0817 hypothetical protein YP_003112229.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; KEGG: cjk:jk1098 hypothetical protein YP_003112230.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: fre:Franean1_0560 cold-shock DNA-binding domain-containing protein YP_003112231.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: sgr:SGR_4581 malate oxidoreductase YP_003112232.1 KEGG: mjl:Mjls_0792 hypothetical protein YP_003112233.1 KEGG: mmi:MMAR_2946 hypothetical protein YP_003112234.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_003112235.1 PFAM: protein of unknown function DUF179; KEGG: sco:SCO2948 hypothetical protein YP_003112236.1 KEGG: rpc:RPC_3182 peptidase C14, caspase catalytic subunit P20 YP_003112237.1 KEGG: sco:SCO2947 hypothetical protein YP_003112238.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: sco:SCO2942 oxidoreductase YP_003112239.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: sco:SCO2941 hypothetical protein YP_003112240.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: sco:SCO2940 oxidoreductase YP_003112241.1 PFAM: type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sma:SAV_5140 protein involving differentiation YP_003112242.1 PFAM: major facilitator superfamily MFS_1; KEGG: mab:MAB_1338 membrane efflux protein YP_003112243.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fre:Franean1_2338 AraC family transcriptional regulator YP_003112244.1 KEGG: sen:SACE_3822 hypothetical protein YP_003112245.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: sgr:SGR_4602 IclR family transcriptional regulator YP_003112246.1 KEGG: dvu:DVU0040 hypothetical protein YP_003112247.1 SMART: HTTM domain protein; KEGG: sma:SAV_4162 hypothetical protein YP_003112248.1 KEGG: sgr:SGR_3742 hypothetical protein YP_003112249.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: sma:SAV_5148 transcription regulator AsnC YP_003112250.1 KEGG: sco:SCO2927 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_003112251.1 KEGG: sma:SAV_5152 hypothetical protein YP_003112252.1 PFAM: isochorismatase hydrolase; KEGG: mpa:MAP1774c hypothetical protein YP_003112253.1 TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: sco:SCO2917 nicotinate phosphoribosyltransferase YP_003112254.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: sma:SAV_5159 ATP-dependent Clp protease adaptor protein ClpS YP_003112255.1 KEGG: sgr:SGR_4624 hypothetical protein YP_003112256.1 KEGG: sil:SPO1854 hypothetical protein YP_003112257.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: surface protein from Gram-positive cocci anchor region; KEGG: aau:AAur_3128 LPXTG-motif-containing cell wall anchor protein YP_003112258.1 KEGG: sco:SCO4899 hypothetical protein YP_003112259.1 KEGG: mab:MAB_3111 hypothetical protein YP_003112260.1 PFAM: TetR family transcriptional regulator; KEGG: sen:SACE_6360 TetR/AcrR family transcriptional regulator YP_003112261.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sen:SACE_1067 alpha/beta hydrolase fold protein YP_003112262.1 KEGG: sen:SACE_6359 flavin-binding monooxygenase- like protein YP_003112263.1 KEGG: proteophosphoglycan ppg4 YP_003112264.1 KEGG: fra:Francci3_3446 XRE family transcriptional regulator YP_003112265.1 KEGG: sgr:SGR_4069 regulatory protein YP_003112266.1 PFAM: protein of unknown function DUF397; KEGG: sco:SCO3424 regulator YP_003112267.1 PFAM: amidase; KEGG: sma:SAV_7269 amidase YP_003112268.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_003112269.1 KEGG: hypothetical protein YP_003112270.1 PFAM: NLP/P60 protein; KEGG: sma:SAV_6062 NLP/P60-family protein YP_003112271.1 PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: sgr:SGR_1422 DNA polymerase III subunit epsilon YP_003112272.1 KEGG: sma:SAV_2648 signal recognition particle; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_003112274.1 TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: ace:Acel_1561 30S ribosomal protein S16P YP_003112275.1 KEGG: sma:SAV_2643 hypothetical protein YP_003112276.1 Essential for efficient processing of 16S rRNA YP_003112277.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_003112278.1 TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: sma:SAV_2640 50S ribosomal protein L19 YP_003112279.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: sgr:SGR_1882 signal peptidase I YP_003112280.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: sgr:SGR_6861 signal peptidase I YP_003112281.1 PFAM: ribonuclease HII/HIII; KEGG: stp:Strop_1312 ribonuclease H YP_003112282.1 KEGG: ace:Acel_1553 hypothetical protein YP_003112283.1 PFAM: protein of unknown function UPF0102; KEGG: art:Arth_2474 protein of unknown function UPF0102 YP_003112284.1 KEGG: GH10507 gene product from transcript GH10507- RA; K01527 nascent polypeptide-associated complex subunit beta YP_003112285.1 KEGG: tfu:Tfu_0670 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003112286.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: ace:Acel_1548 DNA protecting protein DprA YP_003112287.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sen:SACE_6041 integrase/recombinase YP_003112288.1 KEGG: sgr:SGR_1866 RNA polymerase sigma factor WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 3 domain protein YP_003112289.1 PFAM: TetR family transcriptional regulator; KEGG: sma:SAV_2629 TetR family transcriptional regulator YP_003112290.1 PFAM: peptidase M23; KEGG: tfu:Tfu_0675 hypothetical protein YP_003112291.1 TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: sma:SAV_2627 30S ribosomal protein S2 YP_003112292.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_003112293.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: ace:Acel_1540 uridylate kinase YP_003112294.1 TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: sco:SCO5627 ribosome recycling factor YP_003112295.1 PFAM: phosphatidate cytidylyltransferase; KEGG: sma:SAV_2623 phosphatidate cytidylyltransferase YP_003112296.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sma:SAV_1585 hypothetical protein YP_003112297.1 PFAM: transcriptional regulator PadR family protein; KEGG: sma:SAV_1586 PadR-like family transcriptional regulator YP_003112298.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_003112299.1 KEGG: sgr:SGR_5778 hypothetical protein YP_003112300.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fre:Franean1_2363 NADH-flavin reductase-like protein YP_003112301.1 KEGG: nca:Noca_0250 ABC transporter transmembrane protein YP_003112302.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_2862 ABC transporter ATP-binding protein YP_003112303.1 KEGG: ret:RHE_CH02708 hypothetical protein YP_003112307.1 PFAM: ABC transporter; KEGG: sma:SAV_2613 ABC transporter ATP-binding protein YP_003112308.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rha:RHA1_ro04897 protochlorophyllide reductase YP_003112309.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_3098 TetR family transcriptional regulator YP_003112310.1 KEGG: hypothetical protein YP_003112311.1 PFAM: FAD dependent oxidoreductase; KEGG: nca:Noca_3231 FAD dependent oxidoreductase YP_003112312.1 KEGG: ava:Ava_1934 hypothetical protein YP_003112313.1 PFAM: aminotransferase class-III; KEGG: sco:SCO5655 hypothetical protein YP_003112314.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: sma:SAV_2611 transcription regulator AsnC YP_003112315.1 PFAM: aldehyde dehydrogenase; KEGG: sgr:SGR_1845 aldehyde dehydrogenase YP_003112316.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_4524 transmembrane efflux protein YP_003112317.1 KEGG: similar to novel pim oncogene family protein YP_003112318.1 PFAM: NB-ARC domain protein; TPR repeat-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator YP_003112319.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_003112320.1 PFAM: Domain of unknown function DUF1918; KEGG: sen:SACE_6639 hypothetical protein YP_003112321.1 KEGG: sma:SAV_5801 hypothetical protein YP_003112322.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: sma:SAV_5802 thiol-specific antioxidant protein YP_003112323.1 KEGG: fre:Franean1_1865 hypothetical protein YP_003112324.1 KEGG: sco:SCO2365 hypothetical protein YP_003112325.1 KEGG: sen:SACE_1148 hypothetical protein YP_003112326.1 KEGG: fal:FRAAL0608 hypothetical protein YP_003112327.1 KEGG: cmi:CMM_2473 hypothetical protein YP_003112328.1 PFAM: GntR family transcriptional regulator; aminotransferase class I and II; SMART: GntR family transcriptional regulator; KEGG: sma:SAV_7000 GntR family transcriptional regulator YP_003112329.1 KEGG: mav:MAV_3215 flavin-nucleotide-binding protein YP_003112330.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_003112331.1 KEGG: sma:SAV_3975 hypothetical protein YP_003112332.1 PFAM: phosphoglycerate mutase; KEGG: sma:SAV_1772 mutase YP_003112333.1 PFAM: polyprenyl synthetase; KEGG: saq:Sare_3478 polyprenyl synthetase YP_003112334.1 KEGG: sco:SCO2103 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_003112335.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_6561 acetyltransferase YP_003112336.1 PFAM: glycosyl transferase family 2; KEGG: stp:Strop_3247 glycosyl transferase YP_003112337.1 KEGG: tfu:Tfu_2230 hypothetical protein YP_003112338.1 KEGG: ace:Acel_0996 hypothetical protein YP_003112339.1 PFAM: protein of unknown function DUF81; KEGG: sgr:SGR_4657 hypothetical protein YP_003112340.1 PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase; helicase; SMART: DEAD-like helicases; helicase; KEGG: sgr:SGR_1760 ATP-dependent DNA helicase YP_003112341.1 KEGG: sco:SCO5766 hypothetical protein YP_003112342.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: sgr:SGR_5554 major facilitator superfamily permease YP_003112343.1 KEGG: sma:SAV_2492 recombinase A; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: ATPase AAA YP_003112344.1 PFAM: RecX family transcriptional regulator; KEGG: sma:SAV_2491 recombination regulator RecX YP_003112345.1 KEGG: ace:Acel_1490 metal dependent phosphohydrolase; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KH type 1 domain protein; SMART: metal-dependent phosphohydrolase HD region YP_003112346.1 KEGG: sma:SAV_5838 hypothetical protein YP_003112347.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_6391 drug/proton antiporter YP_003112348.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sgr:SGR_6891 transcriptional regulator YP_003112349.1 KEGG: mpa:MAP3720 hypothetical protein YP_003112350.1 KEGG: similar to C6orf205 protein YP_003112351.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mav:MAV_4734 MarR-family protein regulatory protein YP_003112352.1 PFAM: isochorismatase hydrolase; KEGG: sco:SCO0748 hydrolase YP_003112353.1 PFAM: methyltransferase type 11; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: sgr:SGR_6279 methyltransferase YP_003112354.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cms:CMS_0203 DNA-binding membrane protein YP_003112355.1 KEGG: sgr:SGR_882 hypothetical protein YP_003112356.1 PFAM: ROK family protein; KEGG: cms:CMS_1016 ROK family transcriptional regulator YP_003112357.1 PFAM: glycoside hydrolase family 38; glycoside hydrolase family 38 central region; glycosyl hydrolase 38 domain protein; KEGG: sma:SAV_1753 alpha-mannosidase YP_003112358.1 PFAM: glycoside hydrolase family 42 domain protein; KEGG: cma:Cmaq_0463 hypothetical protein YP_003112359.1 PFAM: extracellular solute-binding protein family 1; KEGG: lxx:Lxx17590 sugar ABC transporter sugar- binding protein YP_003112360.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: efa:EF2233 ABC transporter permease YP_003112361.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cbe:Cbei_0771 binding-protein-dependent transport systems inner membrane component YP_003112362.1 KEGG: rca:Rcas_4406 hypothetical protein YP_003112363.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: kra:Krad_0976 oxidoreductase domain- containing protein YP_003112364.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sma:SAV_2089 2-hydroxyacid dehydrogenase YP_003112365.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; KEGG: sgr:SGR_5290 oxidoreductase YP_003112366.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: syf:Synpcc7942_2418 transcriptional regulator YP_003112367.1 PFAM: coagulation factor 5/8 type domain protein; SMART: coagulation factor 5/8 type domain protein; Parallel beta-helix repeat; KEGG: sma:SAV_1723 mycodextranase YP_003112368.1 PFAM: Alginate lyase 2; KEGG: sma:SAV_802 hypothetical protein YP_003112371.1 KEGG: aba:acid345_4061 beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; carbohydrate binding family 6; Ig family protein; coagulation factor 5/8 type domain protein; SMART: cellulose binding type IV YP_003112372.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_003112373.1 PFAM: beta-lactamase; KEGG: sgr:SGR_3563 beta-lactamase YP_003112374.1 PFAM: GCN5-related N-acetyltransferase; KEGG: npu:Npun_R2494 GCN5-related N- acetyltransferase YP_003112375.1 PFAM: protein of unknown function DUF214; KEGG: fre:Franean1_1655 hypothetical protein YP_003112376.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fre:Franean1_1654 ABC transporter YP_003112377.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: sma:SAV_5623 two-component system sensor kinase YP_003112378.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sma:SAV_5624 two-component system response regulator YP_003112379.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_003112380.1 KEGG: lpl:lp_1303a cell surface SD repeat- containing protein YP_003112381.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_4619 serine/threonine protein kinase YP_003112382.1 KEGG: sco:SCO5788 hypothetical protein YP_003112383.1 KEGG: lea-1; plant late Embryo Abundant (LEA) related YP_003112384.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_003112385.1 KEGG: sco:SCO5793 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_003112386.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_003112387.1 PFAM: inositol monophosphatase; KEGG: sma:SAV_2406 myo-inositol 1-monophosphatase YP_003112388.1 KEGG: sgr:SGR_1671 hypothetical protein YP_003112389.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sco:SCO5862 two-component regulator CutR YP_003112390.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sgr:SGR_1669 two-component system sensor kinase YP_003112391.1 PFAM: protein of unknown function DUF77; KEGG: sgr:SGR_2128 hypothetical protein YP_003112392.1 PFAM: flavoprotein; KEGG: fal:FRAAL5505 flavoprotein YP_003112393.1 SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_1330 XRE family transcriptional regulator YP_003112394.1 KEGG: fra:Francci3_1316 hypothetical protein YP_003112395.1 KEGG: ace:Acel_1404 hypothetical protein YP_003112396.1 KEGG: sgr:SGR_1666 hypothetical protein YP_003112397.1 KEGG: sma:SAV_5627 hypothetical protein YP_003112398.1 PFAM: thioesterase superfamily protein; KEGG: sma:SAV_2400 hypothetical protein YP_003112399.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: sgr:SGR_1664 deoxyuridine 5'- triphosphate pyrophosphatase YP_003112400.1 KEGG: sgr:SGR_1663 hypothetical protein YP_003112401.1 KEGG: sgr:SGR_1658 hypothetical protein YP_003112402.1 KEGG: bcl:ABC1386 hypothetical protein YP_003112403.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: sgr:SGR_1657 potassium transporter YP_003112404.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: sgr:SGR_1656 potassium transporter YP_003112405.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (uracil-5)-methyltransferase; KEGG: sco:SCO5901 RNA methyltransferase YP_003112406.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_003112407.1 PFAM: pirin; KEGG: nfa:nfa50930 hypothetical protein YP_003112408.1 PFAM: UMUC domain protein DNA-repair protein; GCN5- related N-acetyltransferase; KEGG: sma:SAV_6985 DNA polymerase IV YP_003112409.1 PFAM: methyltransferase type 12; methyltransferase type 11; methyltransferase small; KEGG: sgr:SGR_5407 methyltransferase YP_003112410.1 KEGG: sco:SCO2097 hypothetical protein YP_003112411.1 PFAM: transglutaminase; SMART: transglutaminase; KEGG: sgr:SGR_5409 hypothetical protein YP_003112412.1 PFAM: protein of unknown function DUF58; KEGG: sgr:SGR_5410 hypothetical protein YP_003112413.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; magnesium chelatase ChlI subunit; ATPase AAA; KEGG: sgr:SGR_5411 regulatory protein YP_003112414.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: ace:Acel_1001 cell division protein MraZ YP_003112415.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: sma:SAV_6114 S-adenosylmethionine-dependent methyltransferase YP_003112416.1 KEGG: ace:Acel_1003 hypothetical protein YP_003112417.1 KEGG: EAP1; Enhanced Adherence to polystyrene; similar to S. pombe predicted GPI-anchored SPBPJ4664.02; similar to RBT1; 70-80 internal PATEST repeats, expanded relative to allelic CaP19.1401; identical to C. albicans -TRUNCATED- YP_003112418.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: sma:SAV_6116 cell division protein FtsI/penicillin-binding protein YP_003112419.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: fre:Franean1_5103 UDP-N-acetylmuramyl- tripeptide synthetase YP_003112420.1 TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-di aminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: sgr:SGR_5417 UDP-N- acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D- alanyl- D-alanine ligase YP_003112421.1 KEGG: sgr:SGR_5418 phospho-N- acetylmuramoyl-pentapeptide-transferase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-transf erase; PFAM: glycosyl transferase family 4 YP_003112422.1 KEGG: tfu:Tfu_1010 glycerate kinase; TIGRFAM: glycerate kinase; PFAM: glycerate kinase YP_003112423.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_003112424.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_3980 TetR family transcriptional regulator YP_003112426.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: sco:SCO2161 hypothetical protein YP_003112427.1 PFAM: PfkB domain protein; KEGG: sgr:SGR_5350 carbohydrate kinase YP_003112428.1 PFAM: aminotransferase class V; KEGG: sco:SCO2157 aminotransferase YP_003112429.1 TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; KEGG: sma:SAV_6047 cytochrome C oxidase subunit II YP_003112430.1 KEGG: sco:SCO2155 cytochrome C oxidase subunit I; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I YP_003112431.1 KEGG: ace:Acel_0958 integral membrane protein YP_003112432.1 KEGG: mgi:Mflv_5599 hypothetical protein YP_003112433.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ace:Acel_1371 ErfK/YbiS/YcfS/YnhG family protein YP_003112434.1 PFAM: protein of unknown function DUF820; KEGG: fra:Francci3_3352 hypothetical protein YP_003112435.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_003112436.1 KEGG: nca:Noca_3132 hypothetical protein YP_003112437.1 KEGG: nca:Noca_3133 hypothetical protein YP_003112439.1 PFAM: cytochrome C oxidase subunit III; KEGG: sgr:SGR_5357 cytochrome C oxidase subunit III YP_003112440.1 PFAM: cytochrome C class I; KEGG: sco:SCO2150 cytochrome C heme-binding subunit YP_003112441.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sco:SCO2149 Rieske iron-sulfur protein YP_003112442.1 PFAM: cytochrome b/b6 domain; KEGG: sco:SCO2148 cytochrome b subunit YP_003112443.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicases; helicase; KEGG: sco:SCO4096 ATP-dependent RNA helicase YP_003112444.1 PFAM: peptidase C60 sortase A and B; KEGG: sgr:SGR_3723 hypothetical protein YP_003112445.1 KEGG: proteophosphoglycan ppg1 YP_003112446.1 PFAM: homogentisate 12-dioxygenase; Cupin 2 conserved barrel domain protein; KEGG: sen:SACE_3944 homogentisate 1,2-dioxygenase YP_003112447.1 KEGG: rha:RHA1_ro02310 hypothetical protein YP_003112448.1 KEGG: sen:SACE_3942 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: Domain of unknown function DUF1969; fumarylacetoacetate hydrolase YP_003112449.1 KEGG: stp:Strop_0714 protein tyrosine/serine phosphatase YP_003112450.1 PFAM: Bifunctional DNA primase/polymerase; KEGG: sco:SCO2279 hypothetical protein YP_003112451.1 KEGG: fra:Francci3_2835 protein tyrosine/serine phosphatase YP_003112452.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: sma:SAV_5931 methionine aminopeptidase YP_003112453.1 KEGG: sma:SAV_5932 hypothetical protein YP_003112454.1 SMART: LamG domain protein jellyroll fold domain protein; KEGG: sco:SCO4487 serine/threonine protein kinase YP_003112455.1 PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_5246 major facilitator superfamily permease YP_003112456.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_003112457.1 KEGG: sco:SCO2263 hypothetical protein YP_003112458.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_5254 major facilitator superfamily permease YP_003112459.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_5255 TetR family transcriptional regulator YP_003112460.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; Male sterility domain; dTDP-4- dehydrorhamnose reductase; KEGG: sen:SACE_1769 hypothetical protein YP_003112461.1 KEGG: pla:Plav_0977 flavin-binding monooxygenase YP_003112462.1 TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: ace:Acel_0919 L-glutamine synthetase YP_003112463.1 KEGG: sma:SAV_7087 hypothetical protein YP_003112465.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: fra:Francci3_4153 zinc-binding alcohol dehydrogenase YP_003112467.1 KEGG: sma:SAV_96 hypothetical protein YP_003112468.1 KEGG: scl:sce4968 hypothetical protein YP_003112469.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bja:blr4028 RNA polymerase YP_003112470.1 PFAM: NUDIX hydrolase; KEGG: sgr:SGR_5816 NTP pyrophosphohydrolase YP_003112471.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_003112472.1 PFAM: beta-lactamase; KEGG: sen:SACE_5313 beta-lactamase precursor YP_003112473.1 PFAM: TetR family transcriptional regulator; Tetracyclin repressor domain protein; KEGG: sen:SACE_5312 TetR family transcriptional regulator YP_003112474.1 KEGG: sma:SAV_5975 hypothetical protein YP_003112475.1 KEGG: bcm:Bcenmc03_7025 zinc finger UBP-type protein YP_003112477.1 PFAM: glycoside hydrolase family 38; KEGG: rxy:Rxyl_0070 glycoside hydrolase, family 38 YP_003112478.1 PFAM: oxidoreductase domain protein; KEGG: mlo:mlr2436 NADH-dependent dyhydrogenase YP_003112479.1 PFAM: xylose isomerase; KEGG: ace:Acel_1816 xylose isomerase domain- containing protein YP_003112480.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tpe:Tpen_1431 phosphotransferase domain- containing protein YP_003112481.1 PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: ttj:TTHA0975 sugar ABC transporter ATP- binding protein YP_003112482.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rsa:RSal33209_0424 sugar ABC transporter permease component YP_003112483.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: gtn:GTNG_1822 integral membrane transport protein YP_003112484.1 PFAM: extracellular solute-binding protein family 1; KEGG: cmi:CMM_1262 sugar ABC transporter substrate binding protein YP_003112485.1 PFAM: UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: kra:Krad_4060 GntR family transcriptional regulator YP_003112486.1 PFAM: myo-inositol catabolism IolB domain protein; KEGG: kra:Krad_4057 myo-inositol catabolism IolB domain-containing protein YP_003112487.1 KEGG: reu:Reut_A3205 phospholipase D/transphosphatidylase YP_003112488.1 PFAM: methyltransferase type 11; KEGG: sen:SACE_1994 rRNA guanine-N1- methyltransferase YP_003112489.1 PFAM: dienelactone hydrolase; BAAT/acyl-CoA thioester hydrolase; KEGG: ace:Acel_1423 carboxymethylenebutenolidase YP_003112490.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: rha:RHA1_ro03809 hypothetical protein YP_003112491.1 KEGG: sma:SAV_7451 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003112492.1 PFAM: protein of unknown function DUF937; KEGG: bja:blr0135 hypothetical protein YP_003112493.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: nfa:nfa26120 oxidoreductase YP_003112494.1 KEGG: ace:Acel_1424 hypothetical protein YP_003112495.1 PFAM: nitric oxide synthase NOS; KEGG: sma:SAV_1531 nitric oxide synthase YP_003112496.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: nca:Noca_2873 sigma-70 region 4 domain- containing protein YP_003112497.1 KEGG: sgr:SGR_2996 hypothetical protein YP_003112498.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: sma:SAV_6568 ATPase YP_003112499.1 PFAM: peptidoglycan-binding protein; KEGG: hypothetical protein YP_003112500.1 KEGG: mab:MAB_4558c hypothetical protein YP_003112501.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: sen:SACE_5607 Na+/H+ antiporter YP_003112502.1 KEGG: bch:Bcen2424_4859 natural resistance- associated macrophage protein YP_003112503.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cmi:CMM_2862 acetyltransferase YP_003112504.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: mva:Mvan_0391 methionine aminopeptidase, type I YP_003112506.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA YP_003112507.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: sma:SAV_4353 phenylacetate-CoA oxygenase subunit PaaB YP_003112508.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: ace:Acel_1441 phenylacetate-CoA oxygenase, PaaI subunit YP_003112509.1 PFAM: protein of unknown function DUF59; KEGG: sen:SACE_3547 phenylacetic acid degradation protein YP_003112510.1 PFAM: ferredoxin; oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: stp:Strop_4069 phenylacetate-CoA oxygenase/reductase, PaaK subunit YP_003112511.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; globin; KEGG: sma:SAV_4276 flavohemoprotein YP_003112512.1 KEGG: stp:Strop_3112 GTPase EngC YP_003112513.1 PFAM: ribonuclease BN; KEGG: sgr:SGR_1387 integral membrane protein YP_003112514.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: fal:FRAAL0773 acyl-CoA dehydrogenase YP_003112515.1 KEGG: nwi:Nwi_1761 acetyltransferase YP_003112516.1 PFAM: indigoidine synthase A family protein; KEGG: saq:Sare_1436 indigoidine synthase A family protein YP_003112517.1 PFAM: PfkB domain protein; KEGG: tfu:Tfu_2129 sugar kinase YP_003112518.1 KEGG: sco:SCO6048 integral membrane protein YP_003112519.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sco:SCO6047 ABC transporter ATP-binding protein YP_003112520.1 KEGG: aau:AAur_3480 hypothetical protein YP_003112521.1 PFAM: band 7 protein; KEGG: fal:FRAAL0512 hypothetical protein YP_003112522.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sma:SAV_2445 sporulation transcription factor YP_003112523.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released YP_003112524.1 KEGG: sgr:SGR_1699 hypothetical protein YP_003112525.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_003112526.1 KEGG: similar to H02F09.3 YP_003112527.1 KEGG: fra:Francci3_2835 protein tyrosine/serine phosphatase YP_003112528.1 PFAM: Sucraseferredoxin family protein; KEGG: sma:SAV_2429 hypothetical protein YP_003112530.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sgr:SGR_4857 ABC transporter ATP- binding protein YP_003112531.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sgr:SGR_1662 ABC transporter ATP- binding protein YP_003112532.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO2734 LysR family transcriptional regulator YP_003112533.1 KEGG: mjl:Mjls_1988 hypothetical protein YP_003112534.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_003112535.1 KEGG: sco:SCO5843 hypothetical protein YP_003112537.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; PglZ domain protein; KEGG: sco:SCO5844 hypothetical protein YP_003112538.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: sgr:SGR_1678 thiosulfate sulfurtransferase YP_003112539.1 PFAM: iron permease FTR1; KEGG: fra:Francci3_3403 iron permease FTR1 YP_003112540.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: fra:Francci3_3404 Tat-translocated enzyme YP_003112541.1 KEGG: sma:SAV_4024 hypothetical protein YP_003112542.1 PFAM: GCN5-related N-acetyltransferase; KEGG: saq:Sare_0465 GCN5-related N- acetyltransferase YP_003112543.1 KEGG: sgr:SGR_1677 hypothetical protein YP_003112544.1 PFAM: protein of unknown function UPF0126; KEGG: ank:AnaeK_3290 protein of unknown function UPF0126 YP_003112545.1 KEGG: proteophosphoglycan 5 YP_003112546.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_1454 RNA polymerase ECF sigma factor YP_003112547.1 KEGG: tye:THEYE_A0730 low-co2 inducible protein lcib YP_003112548.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: sen:SACE_3811 aconitate hydratase YP_003112549.1 KEGG: ank:AnaeK_2153 hypothetical protein YP_003112550.1 PFAM: hypothetical protein; KEGG: mav:MAV_4757 hypothetical protein YP_003112551.1 PFAM: protein of unknown function DUF1501; KEGG: fre:Franean1_1611 hypothetical protein YP_003112552.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_003112553.1 KEGG: sma:SAV_2242 hypothetical protein YP_003112554.1 KEGG: scl:sce6690 hypothetical protein YP_003112555.1 PFAM: protein of unknown function DUF427; KEGG: fal:FRAAL4754 hypothetical protein YP_003112556.1 PFAM: threonyl/alanyl tRNA synthetase SAD; KEGG: rxy:Rxyl_2571 Ala-tRNA(Pro) hydrolase YP_003112557.1 PFAM: Heavy metal transport/detoxification protein; KEGG: fal:FRAAL0988 regulator YP_003112558.1 KEGG: fal:FRAAL3586 hypothetical protein YP_003112559.1 PFAM: glutamine synthetase; KEGG: rxy:Rxyl_3196 L-glutamine synthetase YP_003112560.1 PFAM: peptidase C26; glutamine amidotransferase class-I; KEGG: mpa:MAP2930c hypothetical protein YP_003112561.1 PFAM: aldehyde dehydrogenase; KEGG: sen:SACE_5353 aldehyde dehydrogenase family protein YP_003112562.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sma:SAV_6727 short chain dehydrogenase YP_003112563.1 PFAM: protein of unknown function DUF1707; KEGG: sma:SAV_5183 hypothetical protein YP_003112564.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: saq:Sare_3800 ABC transporter YP_003112565.1 PFAM: ABC transporter; KEGG: ace:Acel_0745 ABC-2 type transporter YP_003112566.1 PFAM: ABC transporter; KEGG: ace:Acel_0746 ABC-2 type transporter YP_003112567.1 KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein YP_003112568.1 TIGRFAM: 2,4-diaminobutyrate 4-transaminase; PFAM: aminotransferase class-III; KEGG: fra:Francci3_4054 aminotransferase YP_003112569.1 PFAM: pyridoxal-dependent decarboxylase; KEGG: fre:Franean1_0661 pyridoxal-dependent decarboxylase YP_003112570.1 PFAM: IucA/IucC family protein; KEGG: sgr:SGR_1721 hypothetical protein YP_003112571.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_2465 hypothetical protein YP_003112572.1 KEGG: sma:SAV_6214 monooxygenase YP_003112573.1 PFAM: IucA/IucC family protein; KEGG: sgr:SGR_1719 hypothetical protein YP_003112574.1 SMART: helicase c2; DEAD-like helicases; KEGG: sgr:SGR_1718 ATP-dependent helicase YP_003112575.1 KEGG: proteophosphoglycan ppg4 YP_003112576.1 KEGG: sco:SCO5803 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein YP_003112577.1 PFAM: ATP-cone domain protein; KEGG: sgr:SGR_1716 hypothetical protein YP_003112579.1 catalyzes the reduction of ribonucleotides to deoxyribonucleotides; the rate-limiting step in dNTP synthesis YP_003112580.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: mac:MA2133 hypothetical protein YP_003112581.1 PFAM: extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: sco:SCO3204 hypothetical protein YP_003112582.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_003112583.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: nfa:nfa43350 transcriptional regulator YP_003112584.1 PFAM: TetR family transcriptional regulator; KEGG: stp:Strop_0872 regulatory protein, TetR YP_003112585.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: stp:Strop_0873 NAD-dependent epimerase/dehydratase YP_003112586.1 PFAM: FAD linked oxidase; KEGG: nfa:nfa18930 oxidoreductase YP_003112587.1 PFAM: helix-turn-helix HxlR type; KEGG: fre:Franean1_1881 HxlR family transcriptional regulator YP_003112588.1 PFAM: NmrA family protein; KEGG: fra:Francci3_2018 NAD-binding protein YP_003112589.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: sma:SAV_6012 oxidoreductase YP_003112590.1 PFAM: hypothetical protein; NAD- dependent epimerase/dehydratase; KEGG: sgr:SGR_5323 NAD dependent epimerase/dehydratase family protein YP_003112591.1 KEGG: sen:SACE_1638 dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein YP_003112592.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_003112593.1 KEGG: sen:SACE_1640 oxidoreductase YP_003112594.1 KEGG: tfu:Tfu_1658 Sel1-like repeat-containing serine/threonine protein kinase YP_003112595.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: sma:SAV_6445 hypothetical protein YP_003112596.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_003112597.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_003112598.1 PFAM: aldose 1-epimerase; KEGG: nca:Noca_2454 aldose 1-epimerase YP_003112599.1 PFAM: beta-lactamase; KEGG: sus:acid_0861 beta-lactamase domain- containing protein YP_003112601.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: sma:SAV_6026 cobalamin (5'-phosphate) synthase YP_003112602.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: sma:SAV_6030 nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase YP_003112603.1 PFAM: cobalbumin biosynthesis protein; KEGG: sco:SCO2173 adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase YP_003112604.1 KEGG: sma:SAV_6033 hypothetical protein YP_003112605.1 PFAM: NUDIX hydrolase; KEGG: art:Arth_1522 NUDIX hydrolase YP_003112607.1 KEGG: rha:RHA1_ro08557 hypothetical protein YP_003112608.1 PFAM: transposase IS4 family protein; KEGG: cgt:cgR_2585 hypothetical protein YP_003112609.1 KEGG: sco:SCO5587 cell division protein FtsH-like protein YP_003112610.1 KEGG: fal:FRAAL6627 hypothetical protein YP_003112611.1 KEGG: mab:MAB_0256c hypothetical protein YP_003112612.1 TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; KEGG: sgr:SGR_4734 transporter YP_003112613.1 KEGG: sma:SAV_3041 integral membrane protein YP_003112614.1 KEGG: rha:RHA1_ro08557 hypothetical protein YP_003112615.1 KEGG: kinetoplast-associated protein-like protein YP_003112616.1 KEGG: gme:Gmet_2113 pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein YP_003112617.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: sen:SACE_4001 phosphopantetheinyl transferase YP_003112618.1 PFAM: aldo/keto reductase; KEGG: stp:Strop_3310 aldo/keto reductase YP_003112619.1 KEGG: sgr:SGR_5340 integral membrane protein YP_003112620.1 PFAM: PspA/IM30 family protein; KEGG: sgr:SGR_5341 phage shock protein A YP_003112621.1 KEGG: fre:Franean1_2533 hypothetical protein YP_003112622.1 PFAM: peptidase M48 Ste24p; KEGG: ace:Acel_0952 heat shock protein HtpX YP_003112623.1 KEGG: ace:Acel_0953 hypothetical protein YP_003112624.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: sco:SCO2255 hypothetical protein YP_003112625.1 KEGG: rha:RHA1_ro08610 integration host factor YP_003112627.1 PFAM: Auxin Efflux Carrier; KEGG: rha:RHA1_ro05610 hypothetical protein YP_003112628.1 PFAM: protein of unknown function DUF1116; KEGG: nca:Noca_1484 hypothetical protein YP_003112629.1 PFAM: FdrA family protein; KEGG: nca:Noca_1485 FdrA family protein YP_003112630.1 PFAM: purine catabolism PurC domain protein; KEGG: sen:SACE_4884 transcriptional regulator YP_003112631.1 TIGRFAM: uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; KEGG: rha:RHA1_ro03492 xanthine/uracil permease YP_003112632.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro03491 dehydrogenase YP_003112633.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: nca:Noca_1490 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_003112634.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: nca:Noca_1491 xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_003112635.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: rha:RHA1_ro03488 carbon monoxide dehydrogenase protein G YP_003112636.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: aoe:Clos_0875 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003112637.1 PFAM: hydantoinase/oxoprolinase; hydantoinaseoxoprolinase domain protein; KEGG: nca:Noca_1496 5-oxoprolinase (ATP- hydrolyzing) YP_003112638.1 PFAM: hydantoinase B/oxoprolinase; KEGG: rha:RHA1_ro03486 hydantoin utilization protein B YP_003112639.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_003112640.1 TIGRFAM: ring-opening amidohydrolase; KEGG: nca:Noca_1505 barbiturase YP_003112641.1 PFAM: protein of unknown function DUF182; KEGG: sma:SAV_7506 xanthine dehydrogenase YP_003112642.1 KEGG: sgr:SGR_1296 hypothetical protein YP_003112643.1 PFAM: protein of unknown function DUF1707; KEGG: rha:RHA1_ro00266 hypothetical protein YP_003112644.1 PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: sgr:SGR_4210 lipase YP_003112645.1 PFAM: ADP-ribosylation/crystallin J1; KEGG: sgr:SGR_2206 hydrolase YP_003112646.1 PFAM: peptidase M48 Ste24p; KEGG: saq:Sare_3515 STE24 endopeptidase YP_003112647.1 KEGG: fra:Francci3_2227 hypothetical protein YP_003112648.1 KEGG: sen:SACE_2199 hypothetical protein YP_003112649.1 PFAM: protein of unknown function DUF214; KEGG: stp:Strop_4186 hypothetical protein YP_003112650.1 PFAM: sodium/hydrogen exchanger; KEGG: aau:AAur_2006 Na+/H+ antiporter YP_003112651.1 KEGG: sco:SCO0908 hypothetical protein YP_003112652.1 PFAM: lytic transglycosylase catalytic; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: sgr:SGR_478 hypothetical protein YP_003112653.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sma:SAV_2033 LuxR family transcriptional regulator YP_003112654.1 PFAM: DSBA oxidoreductase; KEGG: sma:SAV_6393 protein dithiol-disulfide isomerase YP_003112655.1 KEGG: sen:SACE_0790 ABC transporter membrane protein YP_003112656.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sen:SACE_0789 ABC-type transporter ATPase component YP_003112657.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; KEGG: rsa:RSal33209_0379 two component system histidine kinase YP_003112658.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO4072 LuxR family two component system response regulator YP_003112659.1 PFAM: transposase IS4 family protein; KEGG: cgt:cgR_2585 hypothetical protein YP_003112660.1 KEGG: pto:PTO0187 membrane associated serine protease YP_003112661.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: kra:Krad_0218 cold-shock DNA-binding domain- containing protein YP_003112662.1 KEGG: sco:SCO1943 electron transporter YP_003112663.1 KEGG: sco:SCO4985 hypothetical protein YP_003112664.1 PFAM: protein of unknown function DUF1271; KEGG: sma:SAV_1610 ferredoxin YP_003112665.1 PFAM: cytochrome P450; KEGG: sen:SACE_2842 cytochrome P450 hydroxylase YP_003112666.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: sco:SCO3600 hypothetical protein YP_003112667.1 KEGG: sus:acid_3923 hypothetical protein YP_003112668.1 PFAM: Recombinase; Resolvase domain; KEGG: fal:FRAAL2929 hypothetical protein YP_003112669.1 PFAM: protein of unknown function DUF1470; KEGG: fre:Franean1_2325 hypothetical protein YP_003112670.1 PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_2326 major facilitator transporter YP_003112671.1 KEGG: rha:RHA1_ro01700 glycine rich protein YP_003112672.1 KEGG: syg:sync_2411 hypothetical protein YP_003112673.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: mab:MAB_0560 hypothetical protein YP_003112675.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_7405 ABC transporter ATP-binding protein YP_003112676.1 PFAM: protein of unknown function DUF214; KEGG: sco:SCO0819 transmembrane transporter YP_003112677.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sgr:SGR_5300 two-component system sensor kinase YP_003112678.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: fre:Franean1_4332 LuxR family transcriptional regulator YP_003112679.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: tfu:Tfu_3055 anti-sigma factor antagonist YP_003112680.1 PFAM: ATP-binding region ATPase domain protein; KEGG: kra:Krad_4080 protein serine phosphatase with GAF(s) sensor(s) YP_003112681.1 KEGG: fra:Francci3_3754 serine/threonine kinase anti-sigma factor YP_003112682.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 3 domain protein; sigma- 70 region 4 domain protein; KEGG: fra:Francci3_3755 sigma 28 subunit YP_003112683.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: fre:Franean1_0106 band 7 protein YP_003112684.1 KEGG: sma:SAV_3227 hypothetical protein YP_003112685.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sgr:SGR_1773 two-component system sensor kinase YP_003112687.1 KEGG: sbl:Sbal_2296 hypothetical protein YP_003112688.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_4822 serine/threonine protein kinase YP_003112689.1 KEGG: scl:sce8967 hypothetical protein YP_003112690.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fre:Franean1_4960 MarR family transcriptional regulator YP_003112691.1 KEGG: abo:ABO_0018 hypothetical protein YP_003112692.1 KEGG: fre:Franean1_2324 hypothetical protein YP_003112693.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: sgr:SGR_1342 endonuclease/exonuclease/phosphatase family protein YP_003112694.1 PFAM: guanine-specific ribonuclease N1 and T1; KEGG: nfa:nfa9320 guanyl-specific ribonuclease YP_003112695.1 PFAM: CHAD domain containing protein; KEGG: sgr:SGR_4936 hypothetical protein YP_003112696.1 KEGG: rxy:Rxyl_0100 hypothetical protein YP_003112697.1 KEGG: similar to Mortality factor 4 like 2 YP_003112698.1 PFAM: cyclase family protein; KEGG: nfa:nfa12380 hypothetical protein YP_003112699.1 PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: aau:AAur_0244 acetolactate synthase, large subunit YP_003112700.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sgr:SGR_1500 ABC transporter permease protein YP_003112701.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_2250 ABC transporter permease YP_003112702.1 PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_2251 ABC transporter substrate-binding protein YP_003112703.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: saq:Sare_3210 ATPase BadF/BadG/BcrA/BcrD type YP_003112704.1 KEGG: sma:SAV_7422 LacI family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003112706.1 KEGG: saq:Sare_5103 hypothetical protein YP_003112707.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_003112709.1 KEGG: saq:Sare_1146 hypothetical protein YP_003112710.1 KEGG: CH211-159J13.1; similar to Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 YP_003112711.1 KEGG: sma:SAV_3079 integral membrane protein YP_003112712.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sma:SAV_6039 two-component system response regulator YP_003112713.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sco:SCO2166 two component sensor kinase YP_003112714.1 PFAM: MMPL domain protein; KEGG: sma:SAV_3408 integral membrane export protein YP_003112715.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase type 3; haloacid dehalogenase; sucrose-6F-phosphate phosphohydrolase; KEGG: sgr:SGR_3642 hydrolase YP_003112716.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: sen:SACE_4841 mandelate racemase/muconate lactonizing enzyme YP_003112717.1 KEGG: sgr:SGR_5618 alanine-rich protein YP_003112718.1 PFAM: TetR family transcriptional regulator; KEGG: rha:RHA1_ro04628 TetR family transcriptional regulator YP_003112719.1 KEGG: sco:SCO3806 hypothetical protein YP_003112720.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fre:Franean1_1479 short-chain dehydrogenase/reductase SDR YP_003112721.1 KEGG: nfa:nfa27460 hypothetical protein YP_003112722.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_003112723.1 KEGG: bur:Bcep18194_C6899 hypothetical protein YP_003112724.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: fre:Franean1_6618 NmrA family protein YP_003112725.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fre:Franean1_6619 MarR family transcriptional regulator YP_003112726.1 KEGG: fre:Franean1_0543 hypothetical protein YP_003112727.1 KEGG: saq:Sare_3661 hypothetical protein YP_003112728.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bpd:BURPS668_3032 lipoprotein YP_003112729.1 PFAM: peptidase M48 Ste24p; KEGG: mkm:Mkms_1460 hypothetical protein YP_003112730.1 KEGG: sgr:SGR_6091 integral membrane protein YP_003112731.1 SMART: helix-turn-helix domain protein; KEGG: sco:SCO0307 DNA-binding protein YP_003112732.1 KEGG: cvi:CV_2849 hypothetical protein YP_003112733.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: nfa:nfa56490 transcriptional regulator YP_003112734.1 KEGG: sma:SAV_7353 hypothetical protein YP_003112735.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: cvi:CV_0218 transcriptional activator YP_003112736.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: msm:MSMEG_6780 phenazine biosynthesis protein PhzF YP_003112737.1 PFAM: ornithine cyclodeaminase/mu-crystallin; shikimate/quinate 5-dehydrogenase; KEGG: rec:RHECIAT_PC0000375 ornithine cyclodeaminase protein YP_003112738.1 PFAM: FAD linked oxidase; D- arabinono-14-lactone oxidase; KEGG: ace:Acel_0723 FAD linked oxidase domain- containing protein YP_003112739.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: sma:SAV_6263 hypothetical protein YP_003112740.1 PFAM: Luciferase-like monooxygenase; KEGG: fra:Francci3_0161 luciferase-like YP_003112741.1 PFAM: protein of unknown function DUF574; methyltransferase type 12; KEGG: fra:Francci3_1003 hypothetical protein YP_003112742.1 PFAM: transcriptional activator domain; TPR repeat- containing protein; NB-ARC domain protein; transcriptional regulator domain protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: sgr:SGR_2192 AfsR-like transcriptional regulator YP_003112743.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: vfi:VF_2037 Cro/Cl family transcriptional regulator YP_003112745.1 PFAM: protein of unknown function DUF397; KEGG: nfa:nfa4930 hypothetical protein YP_003112746.1 PFAM: NB-ARC domain protein; SMART: ATPase AAA; hypothetical protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator YP_003112748.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sco:SCO4481 serine/threonine protein kinase (fragment) YP_003112750.1 PFAM: protein of unknown function DUF1503; KEGG: sma:SAV_3579 hypothetical protein YP_003112751.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: saq:Sare_0800 ECF subfamily RNA polymerase sigma-24 factor YP_003112752.1 KEGG: hau:Haur_4658 mucin 2 YP_003112753.1 KEGG: sen:SACE_1800 hypothetical protein YP_003112754.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sma:SAV_3779 MerR family transcriptional regulator YP_003112755.1 PFAM: glycoside hydrolase family 31; carbohydrate binding family 6; ricin B lectin; SMART: ricin B lectin; KEGG: aba:acid345_1956 glycoside hydrolase, family 31 YP_003112756.1 NADP-dependent semialdehyde dehydrogenase; part of alternative pathway from alpha-ketoglutarate to succinate YP_003112758.1 KEGG: ade:Adeh_0701 type III secretion system inner membrane R protein YP_003112759.1 PFAM: GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: nca:Noca_3873 GntR family transcriptional regulator YP_003112760.1 KEGG: bmn:BMA10247_2032 lipoprotein YP_003112761.1 KEGG: smt:Smal_3882 hypothetical protein YP_003112762.1 PFAM: phosphoesterase; KEGG: ace:Acel_0232 phosphoesterase YP_003112763.1 KEGG: kra:Krad_3831 TetR family transcriptional regulator YP_003112764.1 PFAM: alpha/beta hydrolase fold protein; KEGG: fal:FRAAL2452 oxidoreductase YP_003112765.1 KEGG: mab:MAB_1477 hypothetical protein YP_003112766.1 PFAM: methyladenine glycosylase; KEGG: stp:Strop_0705 DNA-3-methyladenine glycosylase I YP_003112767.1 PFAM: protein of unknown function ATP binding; KEGG: sen:SACE_0693 ATP/GTP-binding protein YP_003112768.1 TIGRFAM: benzoyl-CoA oxygenase subunit beta; KEGG: bph:Bphy_1539 benzoyl-CoA oxygenase component B (BoxB) YP_003112769.1 cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA YP_003112770.1 PFAM: PaaX domain protein domain; PaaX domain protein; KEGG: sth:STH211 transcriptional regulator, repressor-type YP_003112771.1 PFAM: amino acid permease-associated region; KEGG: sma:SAV_5343 amino acid transporter YP_003112772.1 KEGG: rha:RHA1_ro04493 hypothetical protein YP_003112773.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_5223 TetR family transcriptional regulator YP_003112774.1 PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: sgr:SGR_6529 LacI family transcriptional regulator YP_003112775.1 PFAM: extracellular solute-binding protein family 1; KEGG: cms:CMS_1015 extracellular solute- binding protein YP_003112776.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sen:SACE_7278 integral membrane transport protein YP_003112777.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sen:SACE_7277 ABC transporter permease YP_003112778.1 KEGG: fre:Franean1_5183 hypothetical protein YP_003112779.1 PFAM: ROK family protein; iron dependent repressor; KEGG: sma:SAV_1222 transcriptional regulator YP_003112780.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: xac:XAC4233 bleomycin resistance protein YP_003112781.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nca:Noca_1864 ATPase domain-containing protein YP_003112782.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: fal:FRAAL5299 two-component regulatory system response regulator YP_003112783.1 PFAM: nucleic acid binding OB-fold tRNA/helicase- type; KEGG: fal:FRAAL2086 hypothetical protein YP_003112784.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: stp:Strop_4248 ArsR family transcriptional regulator YP_003112785.1 KEGG: pat:Patl_1116 hypothetical protein YP_003112786.1 PFAM: methyltransferase type 12; methyltransferase type 11; methyltransferase small; KEGG: ace:Acel_0489 methyltransferase type 12 YP_003112787.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: sma:SAV_7347 thioredoxin YP_003112788.1 PFAM: glycoside hydrolase family 37; KEGG: cpr:CPR_0360 cell wall surface anchor family protein YP_003112789.1 PFAM: glycoside hydrolase family 42 domain protein; beta-galactosidase trimerisation domain protein; beta-galactosidase domain protein; KEGG: sen:SACE_5154 beta-galactosidase YP_003112790.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_7265 L-arabinose ABC transport permease protein YP_003112791.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bcl:ABC3300 sugar ABC transporter permease YP_003112792.1 PFAM: extracellular solute-binding protein family 1; KEGG: hau:Haur_3641 extracellular solute-binding protein YP_003112793.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_003112794.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_003112795.1 PFAM: ATP-NAD/AcoX kinase; KEGG: rha:RHA1_ro08468 hypothetical protein YP_003112796.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: vei:Veis_2457 short-chain dehydrogenase/reductase SDR YP_003112797.1 PFAM: GntR family transcriptional regulator; GntR domain protein; SMART: GntR family transcriptional regulator; KEGG: tte:TTE2558 transcriptional regulator YP_003112798.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: nfa:nfa11730 transcriptional regulator YP_003112799.1 PFAM: peptidase S14 ClpP; KEGG: nfa:nfa11720 Clp protease proteolytic subunit YP_003112800.1 PFAM: peptidase S14 ClpP; KEGG: nfa:nfa11710 Clp protease proteolytic subunit YP_003112801.1 KEGG: sgr:SGR_5893 hypothetical protein YP_003112802.1 PFAM: ribonucleotide reductase; KEGG: stp:Strop_4387 ribonucleoside-diphosphate reductase YP_003112803.1 KEGG: stp:Strop_4388 ribonucleoside-diphosphate reductase, subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ribonucleotide reductase large subunit domain protein YP_003112804.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: fal:FRAAL1619 hypothetical protein YP_003112805.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCP1.242c TetR family transcriptional regulator YP_003112806.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: rxy:Rxyl_2398 alcohol dehydrogenase, zinc- binding protein YP_003112807.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: sma:SAV_4781 hypothetical protein YP_003112808.1 PFAM: TetR family transcriptional regulator; KEGG: sen:SACE_4839 TetR family transcriptional regulator YP_003112809.1 PFAM: lipolytic protein G-D-S-L family; KEGG: csc:Csac_0779 GDSL family lipase YP_003112810.1 PFAM: Domain of unknown function DUF1906; KEGG: cac:CAC3395 hypothetical protein YP_003112811.1 KEGG: sma:SAV_2493 hypothetical protein YP_003112812.1 KEGG: fre:Franean1_4107 hypothetical protein YP_003112813.1 SMART: helix-turn-helix domain protein; KEGG: sgr:SGR_4171 hypothetical protein YP_003112814.1 KEGG: proteophosphoglycan 5 YP_003112815.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: nfa:nfa31920 serine/threonine protein kinase YP_003112816.1 PFAM: aminodeoxychorismate lyase; KEGG: blj:BLD_0614 aminodeoxychorismate lyase YP_003112817.1 PFAM: protein of unknown function DUF853 NPT hydrolase KEGG: sma:SAV_4175 hypothetical protein YP_003112818.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sco:SCO3914 transcriptional regulator YP_003112819.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bcm:Bcenmc03_5842 major facilitator transporter YP_003112820.1 PFAM: copper resistance D domain protein; KEGG: cak:Caul_2346 copper resistance D domain- containing protein YP_003112821.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: stp:Strop_4499 sigma-70, region 4 type 2 YP_003112822.1 KEGG: sma:SAV_94 hypothetical protein YP_003112823.1 KEGG: sma:SAV_7202 hypothetical protein YP_003112824.1 KEGG: fal:FRAAL2549 antibiotic resistance ATP- binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003112825.1 PFAM: ABC transporter; KEGG: fal:FRAAL2550 ABC transporter system integral membrane protein YP_003112826.1 PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: nfa:nfa34460 transcriptional regulator YP_003112827.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sma:SAV_373 LysR family transcriptional regulator YP_003112828.1 PFAM: inositol monophosphatase; KEGG: sma:SAV_372 myo-inositol 1-monophosphatase YP_003112829.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: sma:SAV_371 oxidoreductase YP_003112830.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sco:SCO3414 transcriptional regulator YP_003112831.1 PFAM: alpha/beta hydrolase fold protein-3 domain protein; KEGG: rsa:RSal33209_3415 esterase YP_003112833.1 KEGG: rrs:RoseRS_4060 hypothetical protein YP_003112834.1 PFAM: glycosyl transferase family 2; KEGG: tfu:Tfu_2523 fused dolichol-phosphate mannosyltransferase/uncharacterized protein YP_003112835.1 PFAM: hypothetical protein; TPR repeat-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3996 tetratricopeptide TPR_2 YP_003112836.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: mmi:MMAR_1535 ATPase YP_003112837.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sma:SAV_1163 LysR family transcriptional regulator YP_003112838.1 PFAM: aldo/keto reductase; KEGG: sco:SCO7271 ion channel subunit YP_003112841.1 TIGRFAM: hypothetical protein; PFAM: YD repeat-containing protein; KEGG: sma:SAV_21 rhs protein YP_003112842.1 KEGG: sgr:SGR_394 hypothetical protein YP_003112843.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_1226 acetyltransferase YP_003112844.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sgr:SGR_1103 bromoperoxidase YP_003112845.1 proposed role in polysaccahride synthesis YP_003112846.1 KEGG: sma:SAV_504 translation initiation factor IF- 1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein YP_003112847.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cms:CMS_0895 hypothetical protein YP_003112848.1 PFAM: hypothetical protein; KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein YP_003112849.1 PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; KEGG: fal:FRAAL0335 LuxR family transcriptional regulator YP_003112850.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_1454 RNA polymerase ECF sigma factor YP_003112851.1 KEGG: bch:Bcen2424_2521 multicopper oxidase type 3 YP_003112853.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sco:SCO7109 oxidoreductase YP_003112854.1 PFAM: NmrA family protein; dTDP-4-dehydrorhamnose reductase; KEGG: fre:Franean1_3574 NmrA family protein YP_003112855.1 KEGG: fre:Franean1_3571 sigma factor YP_003112856.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO7101 dehydrogenase YP_003112857.1 TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: fre:Franean1_3569 ECF subfamily RNA polymerase sigma-24 factor YP_003112858.1 KEGG: sco:SCO7155 hypothetical protein YP_003112859.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO7149 lyase YP_003112860.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sgr:SGR_4488 transcriptional regulator YP_003112861.1 PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0236 major facilitator transporter YP_003112862.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sgr:SGR_470 monooxygenase YP_003112863.1 PFAM: isoprenylcysteine carboxyl methyltransferase; KEGG: sgr:SGR_471 methyltransferase YP_003112864.1 PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: mgi:Mflv_3991 chalcone/stilbene synthase domain-containing protein YP_003112865.1 PFAM: UbiA prenyltransferase; KEGG: mgi:Mflv_3992 UbiA prenyltransferase YP_003112866.1 PFAM: methyltransferase type 12; O- methyltransferase family 2; methyltransferase type 11; KEGG: mgi:Mflv_3993 methyltransferase type 12 YP_003112867.1 PFAM: DeoR family transcriptional regulator; SMART: DeoR family transcriptional regulator; KEGG: sen:SACE_0763 DeoR family transcriptional regulator YP_003112868.1 PFAM: extracellular solute-binding protein family 1; KEGG: saq:Sare_0747 extracellular solute-binding protein YP_003112869.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sgr:SGR_5276 maltose ABC transporter permease YP_003112870.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO2229 maltose permease YP_003112871.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sgr:SGR_5278 alpha-glucosidase YP_003112872.1 KEGG: sgr:SGR_5274 LacI family transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003112873.1 PFAM: PfkB domain protein; KEGG: sma:SAV_1511 sugar kinase YP_003112874.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL4427 short-chain oxidoreductase YP_003112875.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: fre:Franean1_5616 LuxR family transcriptional regulator YP_003112876.1 KEGG: mav:MAV_1372 hypothetical protein YP_003112877.1 PFAM: TrkA-N domain protein; KEGG: stp:Strop_0242 TrkA domain-containing protein YP_003112878.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sgr:SGR_6453 acyl-CoA dehydrogenase YP_003112881.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sgr:SGR_4696 ABC transporter permease protein YP_003112882.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sgr:SGR_4695 ABC transporter permease protein YP_003112883.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: sgr:SGR_4694 ABC transporter ATP- binding protein YP_003112884.1 PFAM: extracellular solute-binding protein family 1; KEGG: sgr:SGR_4697 ABC transporter substrate-binding protein YP_003112885.1 PFAM: aldehyde dehydrogenase; KEGG: cau:Caur_1767 aldehyde dehydrogenase YP_003112886.1 PFAM: coenzyme A transferase; KEGG: afu:AF1199 glutaconate CoA-transferase, subunit A (GctA) YP_003112887.1 PFAM: coenzyme A transferase; KEGG: sen:SACE_3515 3-oxoadipate:succinyl-CoA transferase subunit beta YP_003112888.1 KEGG: reu:Reut_C6294 citrate synthase YP_003112889.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: kra:Krad_0218 cold-shock DNA-binding domain- containing protein YP_003112890.1 PFAM: NUDIX hydrolase; KEGG: fre:Franean1_7147 NUDIX hydrolase YP_003112891.1 PFAM: beta-lactamase; KEGG: sma:SAV_5851 hypothetical protein YP_003112892.1 PFAM: aldehyde dehydrogenase; KEGG: sma:SAV_5852 aldehyde dehydrogenase YP_003112893.1 PFAM: protein of unknown function DUF1271; KEGG: sgr:SGR_5178 ferredoxin YP_003112894.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bja:bll2512 transcriptional regulator YP_003112895.1 PFAM: ribosomal small subunit Rsm22; KEGG: sgr:SGR_5232 hypothetical protein YP_003112896.1 PFAM: TetR family transcriptional regulator; KEGG: sma:SAV_5854 TetR family transcriptional regulator YP_003112897.1 PFAM: glycosyl transferase group 1; KEGG: sgr:SGR_5187 glycosyl transferase YP_003112898.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sma:SAV_5856 methyltransferase YP_003112899.1 KEGG: sma:SAV_5857 hypothetical protein YP_003112900.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sgr:SGR_2750 serine/threonine protein kinase YP_003112901.1 PFAM: cupin; KEGG: sen:SACE_6746 hypothetical protein YP_003112902.1 PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: sen:SACE_6399 protein of unknown function DUF899,thioredoxin-like YP_003112903.1 PFAM: protein of unknown function DUF1349; KEGG: cmi:CMM_2383 hypothetical protein YP_003112904.1 PFAM: YCII-related; KEGG: nfa:nfa38190 hypothetical protein YP_003112906.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: rha:RHA1_ro03838 sigma factor, includes region 2 YP_003112907.1 KEGG: sgr:SGR_5196 hypothetical protein YP_003112908.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: sgr:SGR_5203 acyl-CoA dehydrogenase YP_003112909.1 PFAM: thiolase; KEGG: sgr:SGR_5204 lipid-transfer protein YP_003112910.1 PFAM: ROK family protein; regulatory protein MarR; KEGG: sgr:SGR_1499 ROK family transcriptional regulator YP_003112911.1 PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_5098 sugar ABC transporter solute- binding protein YP_003112912.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_5097 sugar ABC transporter permease YP_003112913.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO2980 integral membrane transporter YP_003112914.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: ace:Acel_0558 ABC transporter YP_003112915.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nfa:nfa4920 hydrolase YP_003112916.1 PFAM: glycoside hydrolase 15-related; KEGG: sma:SAV_1932 glycosyl hydrolase YP_003112917.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sma:SAV_2787 lipoprotein YP_003112918.1 KEGG: sma:SAV_5378 secreted protein YP_003112919.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rha:RHA1_ro03591 glutamate binding protein solute binding protein family YP_003112920.1 KEGG: sgr:SGR_4866 hypothetical protein YP_003112921.1 PFAM: tyrosine protein kinase; NUDIX hydrolase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_5375 serine/threonine protein kinase YP_003112922.1 SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV_5374 magnesium or manganese-dependent protein phosphatase YP_003112923.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: sgr:SGR_4863 hypothetical protein YP_003112924.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: sgr:SGR_4862 hypothetical protein YP_003112925.1 PFAM: Secreted repeat of unknown function; KEGG: aau:AAur_3562 lipoprotein YP_003112927.1 KEGG: scl:sce3939 hypothetical protein YP_003112928.1 PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sen:SACE_5167 AraC family transcriptional regulator YP_003112929.1 PFAM: isochorismatase hydrolase; KEGG: sen:SACE_5166 isochorismatase hydrolase YP_003112930.1 PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_3939 ABC transporter substrate-binding protein YP_003112931.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bxe:Bxe_B0419 ABC sugar transporter inner membrane subunit YP_003112932.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: nca:Noca_1418 binding-protein-dependent transport systems inner membrane component YP_003112933.1 PFAM: fatty acid desaturase type 2; KEGG: saq:Sare_1811 fatty acid desaturase type 2 YP_003112934.1 activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence YP_003112935.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: mav:MAV_1336 acyl-CoA dehydrogenase, C-domain protein YP_003112936.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mmi:MMAR_4992 acyl-CoA dehydrogenase FadE26 YP_003112937.1 KEGG: bpl:BURPS1106A_1490 alpha/beta fold family hydrolase YP_003112938.1 KEGG: rha:RHA1_ro05576 34 kDa antigenic protein YP_003112939.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mab:MAB_3296 hypothetical protein YP_003112940.1 KEGG: cti:RALTA_B2126 hypothetical protein YP_003112941.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_003112942.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: saq:Sare_2205 short-chain dehydrogenase/reductase SDR YP_003112943.1 PFAM: Luciferase-like monooxygenase; KEGG: sma:SAV_589 F420-dependent dehydrogenase YP_003112944.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: nfa:nfa1470 hypothetical protein YP_003112945.1 KEGG: mmi:MMAR_1557 oxidoreductase YP_003112946.1 PFAM: carboxyl transferase; KEGG: saq:Sare_0033 propionyl-CoA carboxylase YP_003112947.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: sco:SCO2779 acyl-CoA dehydrogenase YP_003112948.1 PFAM: beta-lactamase; KEGG: rha:RHA1_ro06731 beta-lactamase YP_003112949.1 PFAM: protein of unknown function DUF89; KEGG: sco:SCO6072 hypothetical protein YP_003112950.1 PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: dar:Daro_2073 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase YP_003112951.1 PFAM: helix-turn-helix HxlR type; KEGG: rxy:Rxyl_0906 HxlR family transcriptional regulator YP_003112952.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase YP_003112954.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: haloacid dehalogenase; KEGG: saq:Sare_3248 HAD family hydrolase YP_003112956.1 PFAM: MgtC/SapB transporter; KEGG: bbt:BBta_7258 MgtC family protein YP_003112957.1 KEGG: tfu:Tfu_0439 sugar acetyltransferase YP_003112958.1 KEGG: sma:SAV_3913 hypothetical protein YP_003112959.1 PFAM: FAD dependent oxidoreductase; glucose- methanol-choline oxidoreductase; KEGG: tfu:Tfu_2332 cholesterol oxidase YP_003112961.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sco:SCO4868 lipoprotein YP_003112962.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_003112963.1 PFAM: YibE/F family protein; KEGG: sma:SAV_4266 hypothetical protein YP_003112964.1 PFAM: protein of unknown function UPF0060; KEGG: kra:Krad_3114 hypothetical protein YP_003112965.1 PFAM: beta-lactamase; KEGG: sco:SCO2908 hypothetical protein YP_003112966.1 KEGG: mgm:Mmc1_2179 outer membrane adhesin like proteiin YP_003112967.1 KEGG: saq:Sare_0186 copper resistance D domain- containing protein YP_003112968.1 PFAM: protein of unknown function DUF475; integral membrane protein TerC; KEGG: sgr:SGR_6192 integral membrane protein YP_003112969.1 KEGG: sgr:SGR_6224 hypothetical protein YP_003112970.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sco:SCO3724 hypothetical protein YP_003112971.1 PFAM: ABC transporter; ABC transporter; Forkhead-associated protein; SMART: ATPase AAA; Forkhead-associated protein; KEGG: fra:Francci3_0947 FHA domain-containing protein YP_003112972.1 PFAM: protein of unknown function DUF574; KEGG: sma:SAV_4789 hypothetical protein YP_003112973.1 KEGG: sen:SACE_6203 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase; SMART: DEAD-like helicases; helicase; ATPase AAA YP_003112974.1 KEGG: fal:FRAAL3575 hypothetical protein YP_003112975.1 PFAM: ABC transporter; SMC domain protein; SMART: ATPase AAA; KEGG: sen:SACE_7004 ABC transporter ATP-binding component YP_003112976.1 KEGG: fal:FRAAL3273 alkylated DNA repair protein YP_003112977.1 PFAM: sporulation and cell division protein SsgA; KEGG: sgr:SGR_5997 SsgB protein YP_003112978.1 PFAM: aminotransferase class IV; KEGG: sma:SAV_6804 D-alanine aminotransferase YP_003112979.1 PFAM: chorismate binding-like; KEGG: sco:SCO1547 anthranilate synthase YP_003112980.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: sma:SAV_2034 trypsin-like protease YP_003112983.1 PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_4006 major facilitator superfamily permease YP_003112984.1 KEGG: sma:SAV_3183 hypothetical protein YP_003112985.1 KEGG: sgr:SGR_6137 hypothetical protein YP_003112986.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: sen:SACE_3243 acyl-CoA dehydrogenase YP_003112987.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: fra:Francci3_3863 peptidase S1 and S6, chymotrypsin/Hap YP_003112988.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: sma:SAV_2212 membrane protease subunit stomatin/prohibitin-like protein YP_003112989.1 KEGG: rha:RHA1_ro02193 hypothetical protein YP_003112990.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_003112991.1 PFAM: endonuclease V; KEGG: tfu:Tfu_1400 endonuclease V YP_003112992.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: kra:Krad_2593 MarR family transcriptional regulator YP_003112993.1 KEGG: msm:MSMEG_2307 hypothetical protein YP_003112994.1 PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: nfa:nfa36990 hypothetical protein YP_003112995.1 KEGG: mab:MAB_3111 hypothetical protein YP_003112996.1 PFAM: TetR family transcriptional regulator; Resolvase helix-turn- helix domain protein; KEGG: fre:Franean1_7123 TetR family transcriptional regulator YP_003112997.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: nfa:nfa9390 transporter YP_003112998.1 PFAM: nitroreductase; KEGG: sco:SCO5324 oxidoreductase YP_003112999.1 PFAM: thioesterase superfamily protein; KEGG: sma:SAV_6899 hypothetical protein YP_003113000.1 PFAM: extracellular ligand-binding receptor; KEGG: scl:sce9122 binding-protein- dependent transporter YP_003113001.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: tfu:Tfu_2007 6-phosphogluconolactonase YP_003113002.1 KEGG: sgr:SGR_5585 hypothetical protein YP_003113003.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_003113004.1 TIGRFAM: transaldolase; PFAM: transaldolase; KEGG: sgr:SGR_5587 transaldolase YP_003113005.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_003113006.1 converts protoheme IX and farnesyl diphosphate to heme O YP_003113007.1 TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; KEGG: tfu:Tfu_0016 mannose-6-phosphate isomerase YP_003113008.1 PFAM: cytochrome oxidase assembly; KEGG: sma:SAV_6320 cytochrome C oxidase subunit XV assembly protein YP_003113009.1 PFAM: ABC transporter; KEGG: sgr:SGR_5592 ABC transporter permease YP_003113010.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sgr:SGR_5593 ABC transporter ATP- binding protein YP_003113011.1 KEGG: mva:Mvan_4767 hypothetical protein YP_003113012.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: stp:Strop_1186 regulatory protein, LacI YP_003113013.1 PFAM: extracellular solute-binding protein family 1; KEGG: saq:Sare_1080 extracellular solute-binding protein YP_003113014.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: saq:Sare_1081 binding-protein-dependent transport systems inner membrane component YP_003113015.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: stp:Strop_1189 binding-protein-dependent transport systems inner membrane component YP_003113016.1 KEGG: sma:SAV_7274 hypothetical protein YP_003113017.1 PFAM: glycoside hydrolase family 38; glycoside hydrolase family 38 central region; glycosyl hydrolase 38 domain protein; KEGG: sma:SAV_7277 alpha-mannosidase YP_003113018.1 PFAM: aldo/keto reductase; KEGG: ace:Acel_1715 aldo/keto reductase YP_003113019.1 PFAM: ROK family protein; KEGG: sgr:SGR_6530 sugar kinase YP_003113020.1 KEGG: sma:SAV_3392 hypothetical protein YP_003113021.1 PFAM: HMG-I and HMG-Y DNA-binding domain protein; KEGG: sco:SCO1926 DNA-binding protein YP_003113022.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: sma:SAV_6325 iron-regulated ABC-type transporter YP_003113023.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: sma:SAV_6326 iron-regulated ABC-type transporter YP_003113024.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sma:SAV_6327 ferredoxin subunit of phenylpropionate dioxygenase YP_003113025.1 KEGG: sco:SCO1922 ABC transporter ATP-binding subunit; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: ATPase AAA YP_003113026.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: sma:SAV_6329 aminotransferase YP_003113027.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: fre:Franean1_2090 NifU family SUF system FeS assembly protein YP_003113028.1 PFAM: protein of unknown function DUF59; KEGG: ace:Acel_1140 hypothetical protein YP_003113029.1 PFAM: NUDIX hydrolase; KEGG: fra:Francci3_1811 NUDIX hydrolase YP_003113030.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sgr:SGR_5653 ABC transporter ATP- binding protein YP_003113031.1 KEGG: sco:SCO1839 transcriptional regulator YP_003113032.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: sma:SAV_6428 enoyl-CoA hydratase/isomerase YP_003113033.1 KEGG: sus:acid_2254 hypothetical protein YP_003113034.1 PFAM: lipolytic protein G-D-S-L family; KEGG: sco:SCO1253 hypothetical protein YP_003113035.1 PFAM: aminoglycoside phosphotransferase; KEGG: sen:SACE_4273 hypothetical protein YP_003113036.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: sen:SACE_3498 ABC-type multidrug transporter ATPase and permeases YP_003113037.1 KEGG: cti:pRALTA_0458 transposase, IS5 family YP_003113038.1 KEGG: hau:Haur_4020 hypothetical protein YP_003113039.1 KEGG: tfu:Tfu_0148 hypothetical protein YP_003113040.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sma:SAV_7066 integral membrane protein YP_003113041.1 KEGG: sgr:SGR_5665 hypothetical protein YP_003113042.1 PFAM: GCN5-related N-acetyltransferase; KEGG: esi:Exig_0409 GCN5-related N- acetyltransferase YP_003113043.1 PFAM: methyltransferase type 12; KEGG: sma:SAV_626 hypothetical protein YP_003113044.1 PFAM: TetR family transcriptional regulator; Tetracyclin repressor domain protein; KEGG: sma:SAV_6440 TetR family transcriptional regulator YP_003113045.1 PFAM: acetoacetate decarboxylase; KEGG: sma:SAV_6441 hypothetical protein YP_003113046.1 probable dehydrogenase YP_003113047.1 PFAM: amidohydrolase; KEGG: sma:SAV_6443 amidohydrolase YP_003113048.1 PFAM: amidohydrolase; KEGG: sma:SAV_6444 amidohydrolase YP_003113049.1 KEGG: sma:SAV_4085 hypothetical protein YP_003113050.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: fra:Francci3_0070 large conductance mechanosensitive channel protein YP_003113051.1 PFAM: protein of unknown function DUF1003; KEGG: aau:AAur_1849 hypothetical protein YP_003113052.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: nfa:nfa32010 hypothetical protein YP_003113053.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: dac:Daci_0218 LuxR family transcriptional regulator YP_003113054.1 KEGG: sco:SCO1821 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis protein; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003113055.1 KEGG: stp:Strop_1604 hypothetical protein YP_003113056.1 KEGG: sgr:SGR_5675 hypothetical protein YP_003113057.1 KEGG: sco:SCO1820 integral membrane protein YP_003113058.1 KEGG: sco:SCO1817 hypothetical protein YP_003113059.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: ace:Acel_1149 peptidase U62, modulator of DNA gyrase YP_003113060.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sco:SCO1815 3-oxacyl-(ACP) reductase YP_003113061.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_003113062.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO5083 actinorhodin transporter YP_003113064.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sco:SCO4443 MerR family transcriptional regulator YP_003113065.1 PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL3996 transmembrane efflux pump (multidrug resistance related protein) YP_003113066.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: lxx:Lxx21880 MarR family transcriptional regulator YP_003113068.1 PFAM: phosphoglycerate mutase; KEGG: sma:SAV_7051 hypothetical protein YP_003113069.1 KEGG: sgr:SGR_5689 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD- superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; amino acid-binding ACT domain protein YP_003113071.1 KEGG: sco:SCO1799 hypothetical protein YP_003113072.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_6480 ABC transporter ATP-binding protein YP_003113073.1 PFAM: protein of unknown function DUF107; KEGG: sma:SAV_6481 hypothetical protein YP_003113074.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: sma:SAV_6482 secreted protein YP_003113075.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: tfu:Tfu_0769 hypothetical protein YP_003113076.1 PFAM: protein of unknown function DUF81; KEGG: nfa:nfa3090 hypothetical protein YP_003113077.1 PFAM: GCN5-related N-acetyltransferase; KEGG: kra:Krad_4118 GCN5-related N- acetyltransferase YP_003113078.1 KEGG: sco:SCO1856 precorrin-6Y C5,15- methyltransferase YP_003113079.1 TIGRFAM:nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; cob(II)yrinic acid a,c-diamide reductase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nitroreductase; KEGG: sco:SCO1554 nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase YP_003113080.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sgr:SGR_5984 uroporphyrin-III methyltransferase YP_003113081.1 KEGG: sgr:SGR_3958 serine protease YP_003113082.1 PFAM: aldo/keto reductase; KEGG: cak:Caul_4616 aldo/keto reductase YP_003113083.1 PFAM: TetR family transcriptional regulator; KEGG: sen:SACE_3302 TetR family transcriptional regulator YP_003113084.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sma:SAV_6797 rRNA methylase YP_003113085.1 PFAM: transcription factor WhiB; KEGG: tfu:Tfu_1883 regulatory protein YP_003113086.1 KEGG: saq:Sare_4489 hypothetical protein YP_003113087.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; HI0933 family protein; KEGG: stp:Strop_2055 monooxygenase, FAD-binding YP_003113088.1 PFAM: Luciferase-like monooxygenase; KEGG: fal:FRAAL2800 hypothetical protein YP_003113089.1 PFAM: MMPL domain protein; KEGG: sma:SAV_6879 hypothetical protein YP_003113090.1 KEGG: bre:BRE_469 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase YP_003113091.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; RNA binding S1 domain protein; KEGG: fal:FRAAL0492 transcriptional accessory protein YP_003113092.1 PFAM: peptidase M50; KEGG: sco:SCO2260 membrane protein YP_003113093.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; helicase; KEGG: stp:Strop_1732 DEAD/DEAH box helicase domain- containing protein YP_003113094.1 PFAM: histidine triad (HIT) protein; KEGG: sgr:SGR_6005 hypothetical protein YP_003113095.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: sen:SACE_6525 hypothetical protein YP_003113097.1 SMART: Hedgehog/intein hint domain protein; KEGG: sma:SAV_200 large secreted protein YP_003113098.1 KEGG: mab:MAB_2421c hypothetical protein YP_003113099.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_003113100.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: rha:RHA1_ro05166 GntR family transcriptional regulator YP_003113101.1 KEGG: rha:RHA1_ro05165 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain YP_003113102.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sco:SCO1527 membrane transferase YP_003113103.1 acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_003113104.1 PFAM: glycosyl transferase group 1; KEGG: sgr:SGR_6010 glycosyl transferase YP_003113105.1 KEGG: sco:SCO6168 hypothetical protein YP_003113106.1 PFAM: protein of unknown function DUF1470; KEGG: sgr:SGR_2243 hypothetical protein YP_003113107.1 KEGG: sgr:SGR_6011 hypothetical protein YP_003113108.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_003113109.1 PFAM: SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: saq:Sare_1778 SNO glutamine amidotransferase YP_003113110.1 PFAM: protein of unknown function DUF28; KEGG: sma:SAV_6832 hypothetical protein YP_003113111.1 KEGG: sco:SCO1520 Holliday junction resolvase; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_003113112.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_003113113.1 KEGG: sco:SCO1518 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: ATPase AAA central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003113114.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: sco:SCO1517 secreted protein YP_003113115.1 TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sma:SAV_6837 preprotein translocase subunit SecD YP_003113116.1 TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: ace:Acel_1340 preprotein translocase subunit SecF YP_003113117.1 KEGG: sma:SAV_6839 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003113118.1 KEGG: sgr:SGR_6022 ppGpp synthetase; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003113119.1 KEGG: sma:SAV_3616 hypothetical protein YP_003113121.1 PFAM: protein of unknown function DUF349; KEGG: sma:SAV_6841 hypothetical protein YP_003113122.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: sma:SAV_6842 peptidyl-prolyl cis-trans isomerase YP_003113123.1 PFAM: beta-lactamase; KEGG: sco:SCO1509 hydrolase YP_003113124.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_003113125.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_003113127.1 PFAM: protein of unknown function DUF161; KEGG: sma:SAV_6929 hypothetical protein YP_003113128.1 PFAM: aminotransferase class I and II; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: pzu:PHZ_c3113 GntR family transcriptional regulator YP_003113129.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_5503 acetyltransferase YP_003113130.1 KEGG: sma:SAV_2741 hypothetical protein YP_003113131.1 KEGG: Os05g0118900; hypothetical protein YP_003113132.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mav:MAV_0668 ABC transporter ATP-binding protein PstB YP_003113133.1 PFAM: GCN5-related N-acetyltransferase; KEGG: kra:Krad_0956 GCN5-related N- acetyltransferase YP_003113134.1 PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; magnesium chelatase ChlI subunit; SMART: ATPase AAA; KEGG: sco:SCO1506 recombination factor protein RarA YP_003113135.1 KEGG: ace:Acel_1332 hypothetical protein YP_003113136.1 KEGG: fra:Francci3_3215 secreted protein YP_003113137.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003113138.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_003113139.1 PFAM: aminodeoxychorismate lyase; KEGG: sco:SCO1499 integral membrane protein YP_003113140.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_003113141.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: fal:FRAAL2486 methyltransferase YP_003113142.1 PFAM: TetR family transcriptional regulator; KEGG: fal:FRAAL2485 TetR family transcriptional regulator YP_003113143.1 PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_2262 serine/threonine protein kinase YP_003113144.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fre:Franean1_1920 ABC transporter YP_003113145.1 PFAM: protein of unknown function DUF990; KEGG: sma:SAV_5181 integral membrane transporter YP_003113146.1 PFAM: protein of unknown function DUF990; KEGG: sgr:SGR_4648 hypothetical protein YP_003113147.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_003113148.1 PFAM: shikimate kinase; KEGG: ace:Acel_1308 shikimate kinase YP_003113149.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_003113150.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_003113151.1 PFAM: peptidase M24; creatinase; KEGG: sen:SACE_2074 Xaa-Pro dipeptidase YP_003113152.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P; Elongation factor P/YeiP protein; Elongation factor KOW domain protein; KEGG: kra:Krad_3009 elongation factor P YP_003113153.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: sma:SAV_6860 transcription antitermination protein NusB YP_003113154.1 KEGG: sma:SAV_1441 phosphotriesterase-family protein YP_003113155.1 PFAM: carboxymuconolactone decarboxylase; KEGG: cef:CE1088 hypothetical protein YP_003113156.1 PFAM: protein of unknown function DUF1470; KEGG: cmi:CMM_0540 hypothetical protein YP_003113157.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sgr:SGR_6936 hydrolase YP_003113158.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sma:SAV_6861 DNA-binding protein YP_003113159.1 PFAM: phosphoribosyltransferase; KEGG: sgr:SGR_6046 pyrimidine operon regulatory protein YP_003113160.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_003113161.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_003113162.1 KEGG: aau:AAur_2267 hypothetical protein YP_003113163.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: sgr:SGR_6050 carbamoyl-phosphate synthase small subunit YP_003113164.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain ATP- binding; MGS domain protein; carbamoyl-phosphate synthetase large chain oligomerisation; carbamoyl- phosphate synthetase large chain domain protein; KEGG: sma:SAV_6867 carbamoyl phosphate synthase large subunit YP_003113165.1 KEGG: tfu:Tfu_0927 dihydroorotate dehydrogenase 2; TIGRFAM: dihydroorotate dehydrogenase; PFAM: dihydroorotate dehydrogenase YP_003113166.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: sgr:SGR_6053 orotidine 5'-phosphate decarboxylase YP_003113167.1 KEGG: saq:Sare_0651 hypothetical protein YP_003113168.1 KEGG: rha:RHA1_ro05039 hypothetical protein YP_003113169.1 PFAM: TetR family transcriptional regulator; KEGG: sma:SAV_2845 TetR family transcriptional regulator YP_003113170.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: fra:Francci3_2146 CMP/dCMP deaminase, zinc- binding YP_003113171.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: sco:SCO1656 hydrolase YP_003113172.1 PFAM: protein of unknown function DUF37; KEGG: dra:DR_2150 hypothetical protein YP_003113173.1 KEGG: nca:Noca_2636 hypothetical protein YP_003113174.1 PFAM: peptidase M50; CBS domain containing protein; KEGG: sco:SCO1652 hypothetical protein YP_003113175.1 PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: sgr:SGR_5853 hypothetical protein YP_003113176.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rsa:RSal33209_1015 ABC transporter sugar permease YP_003113177.1 PFAM: extracellular solute-binding protein family 1; KEGG: rsa:RSal33209_1016 ABC-type sugar transporter periplasmic component YP_003113178.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rsa:RSal33209_1017 ABC transporter sugar permease YP_003113179.1 KEGG: rsa:RSal33209_1534 HAD superfamily hydrolase YP_003113180.1 PFAM: beta-lactamase; KEGG: rsa:RSal33209_1018 zinc-dependent hydrolase YP_003113181.1 KEGG: stp:Strop_2240 hypothetical protein YP_003113182.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: sma:SAV_6677 ATPase AAA family protein YP_003113183.1 PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: sgr:SGR_5857 proteasome component YP_003113184.1 PFAM: protein of unknown function DUF797; KEGG: fal:FRAAL2871 hypothetical protein YP_003113185.1 PFAM: 20S proteasome A and subunit betas; KEGG: nca:Noca_2645 proteasome subunit beta YP_003113186.1 PFAM: 20S proteasome A and subunit betas; KEGG: nca:Noca_2646 20S proteasome, A and subunit betas YP_003113187.1 PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: sco:SCO1640 hypothetical protein YP_003113188.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: sma:SAV_6686 FK-506 binding protein, peptidyl- prolyl cis-trans isomerase YP_003113189.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: sco:SCO1638 peptidyl-prolyl cis-trans isomerase YP_003113190.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: bmj:BMULJ_03536 threonine efflux protein YP_003113191.1 KEGG: sma:SAV_6583 hypothetical protein YP_003113192.1 KEGG: stp:Strop_2248 hypothetical protein YP_003113193.1 KEGG: sco:SCO1637 hypothetical protein YP_003113194.1 KEGG: ace:Acel_1201 hypothetical protein YP_003113195.1 KEGG: hypothetical protein LOC100021230 YP_003113196.1 KEGG: sgr:SGR_5868 hypothetical protein YP_003113198.1 KEGG: cgb:cg1685 twin argininte translocase protein A YP_003113199.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: sco:SCO1632 integral membrane protein SCI4115c YP_003113200.1 PFAM: diacylglycerol kinase; SMART: diacylglycerol kinase; KEGG: sma:SAV_6694 hypothetical protein YP_003113201.1 PFAM: DEAD/DEAH box helicase; DSH domain protein; helicase; SMART: DEAD-like helicases; helicase domain protein; KEGG: sgr:SGR_5873 ATP-dependent RNA helicase YP_003113202.1 PFAM: 5'-3' exonuclease; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; KEGG: sgr:SGR_5889 5'-3' exonuclease YP_003113203.1 PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_1737 ABC transporter binding protein YP_003113204.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: sma:SAV_2179 sensor-like histidine kinase YP_003113205.1 PFAM: Roadblock/LC7 family protein; KEGG: sma:SAV_2180 hypothetical protein YP_003113206.1 PFAM: protein of unknown function DUF742; KEGG: sma:SAV_2181 hypothetical protein YP_003113207.1 PFAM: protein of unknown function ATP binding; KEGG: sma:SAV_2182 ATP/GTP-binding protein YP_003113208.1 PFAM: protein of unknown function UPF0027; KEGG: sgr:SGR_4185 hypothetical protein YP_003113209.1 KEGG: sma:SAV_6507 L-alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein YP_003113210.1 KEGG: fal:FRAAL1158 hypothetical protein YP_003113211.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase; KEGG: nca:Noca_2489 tyrosine recombinase XerD YP_003113212.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: sma:SAV_6508 partitioning or sporulation protein YP_003113213.1 KEGG: sma:SAV_6509 hypothetical protein YP_003113214.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: sma:SAV_6510 hypothetical protein YP_003113215.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: sma:SAV_6511 transcriptional regulator YP_003113216.1 KEGG: mab:MAB_3781 hypothetical protein YP_003113217.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: sgr:SGR_5729 pseudouridine synthase YP_003113218.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_5483 transmembrane transporter YP_003113219.1 SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_5457 helix-turn-helix domain- containing protein YP_003113220.1 TIGRFAM: chorismate mutase; PFAM: chorismate mutase of the AroH class; KEGG: sma:SAV_6520 chorismate mutase YP_003113221.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_003113222.1 PFAM: metallophosphoesterase; KEGG: mkm:Mkms_4009 metallophosphoesterase YP_003113223.1 KEGG: mle:ML1120 hypothetical protein YP_003113224.1 PFAM: protein of unknown function DUF445; KEGG: sma:SAV_5185 hypothetical protein YP_003113225.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; KEGG: fra:Francci3_2035 NAD-dependent epimerase/dehydratase YP_003113226.1 KEGG: sma:SAV_7429 hypothetical protein YP_003113227.1 PFAM: permease; KEGG: mmi:MMAR_1754 hypothetical protein YP_003113229.1 KEGG: rha:RHA1_ro03536 hypothetical protein YP_003113230.1 PFAM: Heavy metal transport/detoxification protein; KEGG: sgr:SGR_4828 copper chaperone YP_003113231.1 PFAM: electron transfer flavoprotein alpha/beta- subunit; KEGG: nca:Noca_1815 electron transfer flavoprotein beta-subunit YP_003113232.1 PFAM: electron transfer flavoprotein subunit alpha; electron transfer flavoprotein alpha/beta-subunit; KEGG: ace:Acel_0685 electron transfer flavoprotein, subunit alpha YP_003113233.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: fal:FRAAL6636 hypothetical protein YP_003113234.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO1103 hydrolase YP_003113235.1 KEGG: sma:SAV_3039 hypothetical protein YP_003113236.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: nfa:nfa27380 sigma factor YP_003113237.1 TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: sgr:SGR_4078 flavodoxin YP_003113238.1 E3 component of alpha keto acid dehydrogenase complexes LpdC; forms a homodimer; binds one molecule of FAD monomer; catalyzes NAD+-dependent oxidation of dihydrolipoyl cofactors that are covalently linked to the E2 component YP_003113239.1 PFAM: protein of unknown function DUF574; KEGG: sco:SCO0929 hypothetical protein YP_003113240.1 KEGG: sen:SACE_7137 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold domain protein; hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein YP_003113241.1 PFAM: alpha/beta hydrolase fold protein; KEGG: rha:RHA1_ro03350 hydrolase YP_003113242.1 PFAM: FAD linked oxidase; KEGG: sen:SACE_4261 (S)-2-hydroxy-acid oxidase subunit D YP_003113243.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sen:SACE_4263 glycolate oxidase iron-sulfur subunit YP_003113244.1 PFAM: alanine racemase domain protein; KEGG: sen:SACE_5299 D-amino acid deaminase YP_003113245.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: amr:AM1_2206 hypothetical protein YP_003113246.1 PFAM: endoribonuclease L-PSP; KEGG: mma:MM_0502 translation initiation inhibitor YP_003113247.1 PFAM: protein of unknown function DUF1470; KEGG: sco:SCO4591 hypothetical protein YP_003113248.1 KEGG: bcs:BCAN_A2153 hypothetical protein YP_003113249.1 PFAM: carbohydrate-binding CenC domain protein; KEGG: sma:SAV_1751 chitinase A YP_003113250.1 PFAM: ROK family protein; KEGG: hau:Haur_1182 ROK family protein YP_003113251.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fre:Franean1_6608 AraC family transcriptional regulator YP_003113252.1 PFAM: NmrA family protein; KEGG: xau:Xaut_0312 NmrA family protein YP_003113253.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_3497 acetyltransferase YP_003113254.1 PFAM: low temperature requirement A; KEGG: rha:RHA1_ro03556 low temperature requirement protein A YP_003113256.1 PFAM: Lanthionine synthetase C family protein; SMART: serine/threonine protein kinase; KEGG: sen:SACE_4613 hypothetical protein YP_003113257.1 PFAM: restriction endonuclease; KEGG: sco:SCO4213 hypothetical protein YP_003113258.1 KEGG: bur:Bcep18194_B1608 hypothetical protein YP_003113259.1 PFAM: DeoR family transcriptional regulator; Helix-turn-helix type 11 domain protein; SMART: DeoR family transcriptional regulator; KEGG: fre:Franean1_7075 DeoR family transcriptional regulator YP_003113260.1 KEGG: nfa:nfa3960 hypothetical protein YP_003113261.1 KEGG: similar to ELKS/RAB6-interacting/CAST family member 2 YP_003113262.1 KEGG: rha:RHA1_ro05722 hypothetical protein YP_003113263.1 PFAM: protein of unknown function DUF1458; KEGG: sco:SCO0915 hypothetical protein YP_003113264.1 PFAM: glycosidase PH1107-related; KEGG: cth:Cthe_3112 glycosidase, PH1107-related YP_003113265.1 PFAM: glycosyl transferase group 1; KEGG: sat:SYN_01902 mannosyltransferase YP_003113266.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: sen:SACE_0085 ArsR family transcriptional regulator YP_003113267.1 PFAM: major facilitator superfamily MFS_1; KEGG: sen:SACE_0084 EmrB/QacA family drug resistance transporter YP_003113268.1 PFAM: protein of unknown function DUF1023; KEGG: stp:Strop_4380 hypothetical protein YP_003113269.1 KEGG: sco:SCO4440 hypothetical protein YP_003113270.1 KEGG: sgr:SGR_1978 LacI family transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003113271.1 PFAM: extracellular solute-binding protein family 5; KEGG: sgr:SGR_1977 ABC transporter substrate-binding protein YP_003113272.1 KEGG: sgr:SGR_1976 ABC transporter ATP- binding protein; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003113273.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sgr:SGR_1975 ABC transporter permease protein YP_003113274.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sgr:SGR_1974 ABC transporter permease protein YP_003113275.1 KEGG: sgr:SGR_1973 ABC transporter ATP- binding protein; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003113276.1 KEGG: sgr:SGR_1972 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1 YP_003113277.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_003113278.1 KEGG: sma:SAV_2761 hypothetical protein YP_003113279.1 PFAM: hypothetical protein YP_003113280.1 PFAM: PHP domain protein; KEGG: sma:SAV_3795 secreted protein YP_003113281.1 KEGG: ace:Acel_1924 hypothetical protein YP_003113282.1 KEGG: mab:MAB_4656 hypothetical protein YP_003113283.1 PFAM: metallophosphoesterase; KEGG: fal:FRAAL4118 secreted phosphohydrolase YP_003113284.1 PFAM: blue (type 1) copper domain protein; KEGG: mab:MAB_4654 hypothetical protein YP_003113285.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: fal:FRAAL4137 ECF sub family sigma-70 factor YP_003113286.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: mav:MAV_4414 Rieske [2Fe-2S] domain protein YP_003113287.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: fre:Franean1_1979 glycosyl hydrolase 53 protein YP_003113288.1 PFAM: Thaumatin pathogenesis-related protein; SMART: Thaumatin pathogenesis-related protein; KEGG: Os06g0691200; hypothetical protein YP_003113289.1 PFAM: Thaumatin pathogenesis-related protein; SMART: Thaumatin pathogenesis-related protein; KEGG: Os06g0691200; hypothetical protein YP_003113290.1 PFAM: protein of unknown function ATP binding; Miro domain protein; KEGG: sgr:SGR_1060 ATP/GTP-binding protein YP_003113291.1 PFAM: protein of unknown function DUF742; KEGG: fra:Francci3_4332 hypothetical protein YP_003113292.1 PFAM: Roadblock/LC7 family protein; KEGG: fra:Francci3_4331 hypothetical protein YP_003113293.1 PFAM: ATP-binding region ATPase domain protein; KEGG: fra:Francci3_4330 ATP-binding region, ATPase- like YP_003113294.1 KEGG: nfa:nfa47700 hypothetical protein YP_003113295.1 PFAM: FAD dependent oxidoreductase; KEGG: fre:Franean1_1878 FAD dependent oxidoreductase YP_003113296.1 KEGG: stp:Strop_1464 TrmB family transcriptional regulator YP_003113297.1 KEGG: saq:Sare_4136 peptidase S8 and S53 subtilisin kexin sedolisin YP_003113298.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bam:Bamb_0804 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_003113299.1 PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_1471 major facilitator transporter YP_003113300.1 PFAM: aldo/keto reductase; KEGG: sma:SAV_1050 oxidoreductase YP_003113301.1 PFAM: oxidoreductase domain protein; KEGG: kra:Krad_3481 oxidoreductase domain- containing protein YP_003113302.1 KEGG: mac:MA1754 cell surface protein YP_003113303.1 KEGG: sen:SACE_4770 hypothetical protein YP_003113304.1 KEGG: fal:FRAAL2242 signal peptide YP_003113305.1 PFAM: glycosyl transferase family 20; KEGG: sen:SACE_0462 trehalose-6-phosphate synthase YP_003113306.1 PFAM: nucleotidyl transferase; KEGG: nfa:nfa17780 UTP-glucose-1-phosphate uridylyltransferase YP_003113307.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: sco:SCO7371 hypothetical protein YP_003113308.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: rsa:RSal33209_2678 major facilitator transporter YP_003113309.1 PFAM: protein of unknown function DUF939; KEGG: sma:SAV_7431 integral membrane protein YP_003113310.1 KEGG: sgr:SGR_848 hypothetical protein YP_003113311.1 PFAM: glycoside hydrolase clan GH-D; KEGG: sma:SAV_1082 alpha-galactosidase YP_003113312.1 PFAM: ROK family protein; KEGG: sma:SAV_1081 transcriptional regulator YP_003113313.1 PFAM: carbohydrate binding family 6; KEGG: sma:SAV_1077 melibiase YP_003113314.1 KEGG: sma:SAV_1076 hypothetical protein YP_003113315.1 PFAM: lipolytic protein G-D-S-L family; KEGG: sma:SAV_1075 secreted protein YP_003113316.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO7815 TetR family transcriptional regulator YP_003113317.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL5375 short chain dehydrogenase/reductase YP_003113318.1 KEGG: mmi:MMAR_2245 hypothetical protein YP_003113319.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_003113320.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: pac:PPA1981 pyridine nucleotide-disulphide oxidoreductase YP_003113321.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bpy:Bphyt_5450 AraC family transcriptional regulator YP_003113322.1 PFAM: cell surface receptor IPT/TIG domain protein; SMART: cell surface receptor IPT/TIG domain protein; KEGG: sma:SAV_57 hypothetical protein YP_003113323.1 PFAM: cell surface receptor IPT/TIG domain protein; SMART: cell surface receptor IPT/TIG domain protein; KEGG: sma:SAV_58 hypothetical protein YP_003113324.1 KEGG: sma:SAV_55 hypothetical protein YP_003113325.1 TIGRFAM: extracellular repeat protein, HAF family; KEGG: mac:MA0957 hypothetical protein YP_003113326.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: sma:SAV_1477 LacI family transcriptional regulator YP_003113328.1 PFAM: FG-GAP repeat protein; KEGG: sma:SAV_6085 hypothetical protein YP_003113329.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: aau:AAur_4049 FG-GAP repeat-containing protein YP_003113330.1 PFAM: FG-GAP repeat protein; KEGG: aau:AAur_4049 FG-GAP repeat-containing protein YP_003113331.1 PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; hypothetical protein; NB- ARC domain protein; transcriptional regulator domain protein; SMART: hypothetical protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator YP_003113332.1 KEGG: sma:SAV_74 hypothetical protein YP_003113333.1 PFAM: patatin; KEGG: nfa:nfa9880 hypothetical protein YP_003113334.1 PFAM: TetR family transcriptional regulator; KEGG: mjl:Mjls_0917 TetR family transcriptional regulator YP_003113336.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sma:SAV_1251 hydroxylase YP_003113337.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_003113338.1 PFAM: AMP-dependent synthetase and ligase; KEGG: met:M446_0237 AMP-dependent synthetase and ligase YP_003113339.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cak:Caul_0241 EmrB/QacA family drug resistance transporter YP_003113340.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: bha:BH3677 potassium uptake protein YP_003113341.1 PFAM: cytochrome P450; KEGG: sen:SACE_2842 cytochrome P450 hydroxylase YP_003113343.1 KEGG: sdn:Sden_2034 hypothetical protein YP_003113344.1 PFAM: protein of unknown function DUF1697; KEGG: sen:SACE_3751 hypothetical protein YP_003113345.1 PFAM: protein of unknown function DUF1271; KEGG: mmi:MMAR_2879 ferredoxin YP_003113346.1 TIGRFAM: PfaD family protein; malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase; KEGG: scl:sce4138 acyltransferase/oxidoreductase YP_003113347.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: sma:SAV_3642 non-ribosomal peptide synthetase YP_003113348.1 TIGRFAM: chlorinating enzyme; PFAM: phytanoyl-CoA dioxygenase; KEGG: psb:Psyr_2610 chlorinating enzyme YP_003113349.1 PFAM: alpha/beta hydrolase fold protein; KEGG: psb:Psyr_2609 alpha/beta hydrolase fold protein YP_003113350.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: rsa:RSal33209_2791 Crp family transcriptional regulator YP_003113351.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; beta- ketoacyl synthase; phosphopantetheine-binding; Non- ribosomal peptide synthetase; condensation domain protein; KEGG: scl:sce4135 hybrid polyketide synthase/nonribosomal peptide synthetase YP_003113352.1 PFAM: thioesterase; KEGG: sen:SACE_4275 thioesterase involved in non- ribosomal peptide biosynthesis YP_003113354.1 PFAM: hydroxymethylglutaryl-coenzyme A synthase domain protein; hydroxymethylglutaryl-coenzyme A synthase domain; KEGG: cbd:CBUD_1931 hydroxymethylglutaryl-CoA synthase family protein YP_003113355.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: bte:BTH_II1669 polyketide biosynthesis enoyl- CoA hydratase YP_003113356.1 KEGG: scl:sce4135 hybrid polyketide synthase/nonribosomal peptide synthetase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: beta-ketoacyl synthase; acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding YP_003113357.1 PFAM: KR domain protein; beta-ketoacyl synthase; methyltransferase type 11; enoyl-CoA hydratase/isomerase; methyltransferase type 12; short-chain dehydrogenase/reductase SDR; aromatic amino acid beta- eliminating lyase/threonine aldolase; alpha/beta hydrolase fold protein; phosphopantetheine-binding; KEGG: scl:sce3193 polyketide synthase YP_003113358.1 KEGG: stp:Strop_2227 hypothetical protein YP_003113359.1 PFAM: phosphopantetheine-binding; KEGG: mxa:MXAN_3946 acyl carier protein YP_003113360.1 PFAM: hydroxymethylglutaryl-coenzyme A synthase domain protein; hydroxymethylglutaryl-coenzyme A synthase domain; KEGG: mxa:MXAN_3945 polyketide TA biosynthesis protein TaF YP_003113361.1 KEGG: sen:SACE_4569 hypothetical protein YP_003113362.1 involved in polyketide production YP_003113363.1 PFAM: LmbE family protein; KEGG: sgr:SGR_504 hypothetical protein YP_003113364.1 PFAM: aminotransferase class IV; KEGG: sen:SACE_4032 hypothetical protein YP_003113365.1 KEGG: fra:Francci3_3458 hypothetical protein YP_003113366.1 PFAM: glycoside hydrolase family 31; KEGG: sma:SAV_2570 glycosyl hydrolase YP_003113367.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cmi:CMM_0361 sugar ABC transporter permease YP_003113368.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3466 binding-protein-dependent transport systems inner membrane component YP_003113369.1 PFAM: extracellular solute-binding protein family 1; KEGG: cmi:CMM_0270 sugar ABC transporter substrate binding protein YP_003113370.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sma:SAV_2569 LacI family transcriptional regulator YP_003113371.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: kra:Krad_2789 short chain dehydrogenase YP_003113372.1 PFAM: FAD dependent oxidoreductase; KEGG: npu:Npun_R1079 FAD dependent oxidoreductase YP_003113373.1 KEGG: kra:Krad_4362 hypothetical protein YP_003113374.1 KEGG: sco:SCO6509 hydrophobic protein YP_003113375.1 PFAM: CsbD family protein; KEGG: hau:Haur_3862 CsbD family protein YP_003113376.1 PFAM: sugar isomerase (SIS); KEGG: nca:Noca_0872 sugar isomerase (SIS) YP_003113377.1 PFAM: UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: rxy:Rxyl_0630 GntR family transcriptional regulator YP_003113378.1 PFAM: ROK family protein; KEGG: rsp:RSP_1441 GntR family regulatory protein YP_003113379.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: rsh:Rsph17029_0095 ATPase, BadF/BadG/BcrA/BcrD type YP_003113380.1 PFAM: extracellular solute-binding protein family 1; KEGG: nca:Noca_0869 extracellular solute-binding protein YP_003113381.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: nca:Noca_0870 binding-protein-dependent transport systems inner membrane component YP_003113382.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: nca:Noca_0871 binding-protein-dependent transport systems inner membrane component YP_003113383.1 PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_4519 benzaldehyde dehydrogenase (NAD+) YP_003113384.1 PFAM: amino acid permease-associated region; KEGG: acr:Acry_0648 amino acid permease-associated region YP_003113385.1 catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine YP_003113386.1 KEGG: sen:SACE_1649 cobalamin 5'-phosphate synthase YP_003113387.1 PFAM: nucleotidyl transferase; KEGG: nfa:nfa17780 UTP-glucose-1-phosphate uridylyltransferase YP_003113388.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: kra:Krad_0483 anti-sigma-factor antagonist YP_003113389.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sco:SCO3690 hydrolase YP_003113390.1 KEGG: sco:SCO3691 regulatory protein; TIGRFAM: PAS sensor protein; PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein YP_003113392.1 KEGG: bcs:BCAN_A1518 DNA primase YP_003113394.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: sco:SCO2799 secreted sugar hydrolase YP_003113395.1 KEGG: sen:SACE_4693 transcriptional regulator YP_003113396.1 KEGG: sen:SACE_4692 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I YP_003113397.1 PFAM: arsenate reductase; KEGG: sco:SCO2206 hypothetical protein YP_003113398.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sco:SCO7117 ferredoxin reductase YP_003113399.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_003113400.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_003113401.1 PFAM: glycosyl transferase family 20; KEGG: sen:SACE_0462 trehalose-6-phosphate synthase YP_003113402.1 PFAM: glycoside hydrolase family 18; KEGG: sco:SCO7633 secreted endo-beta-N- acetylglucosaminidase YP_003113403.1 KEGG: fre:Franean1_2313 hypothetical protein YP_003113404.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: sgr:SGR_3730 hypothetical protein YP_003113405.1 PFAM: extracellular ligand-binding receptor; KEGG: fra:Francci3_0341 extracellular ligand- binding receptor YP_003113406.1 KEGG: scl:sce6697 transcriptional regulator YP_003113407.1 KEGG: smd:Smed_5738 hypothetical protein YP_003113408.1 KEGG: bbt:BBta_4640 hypothetical protein YP_003113410.1 KEGG: afe:Lferr_1675 hypothetical protein YP_003113411.1 PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: sal:Sala_1017 beta-galactosidase YP_003113412.1 PFAM: carbohydrate binding family 6; KEGG: sus:acid_0425 hypothetical protein YP_003113413.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: rha:RHA1_ro00150 response regulator, two- component system YP_003113414.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sgr:SGR_4104 two-component system sensor kinase YP_003113415.1 PFAM: MMPL domain protein; KEGG: sco:SCO7536 integral membrane protein YP_003113416.1 PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: cms:CMS_1996 30S ribosomal protein S1 YP_003113417.1 PFAM: NmrA family protein; KEGG: fal:FRAAL4824 hydroxylase YP_003113418.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: sgr:SGR_3455 AsnC family transcriptional regulator YP_003113420.1 PFAM: ROK family protein; KEGG: mbb:BCG_0699 sugar kinase YP_003113421.1 KEGG: sco:SCO1078 LacI family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003113422.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rxy:Rxyl_3188 LuxR family transcriptional regulator YP_003113423.1 PFAM: protein of unknown function DUF1486; KEGG: scl:sce1224 hypothetical protein YP_003113424.1 PFAM: protein of unknown function DUF1330; KEGG: bxe:Bxe_B0417 hypothetical protein YP_003113425.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sco:SCO6612 hydrolase YP_003113426.1 PFAM: helix-turn-helix HxlR type; KEGG: sma:SAV_7199 transcriptional regulator YP_003113427.1 PFAM: NLP/P60 protein; KEGG: sma:SAV_1807 hypothetical protein YP_003113428.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sco:SCO4820 serine/threonine protein kinase YP_003113429.1 KEGG: sco:SCO4821 hypothetical protein YP_003113430.1 PFAM: protein of unknown function DUF1206; KEGG: sgr:SGR_819 hypothetical protein YP_003113431.1 KEGG: fal:FRAAL1744 hypothetical protein; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase YP_003113433.1 KEGG: hypothetical protein YP_003113434.1 KEGG: hypothetical protein YP_003113435.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO6603 transmembrane sugar transporter YP_003113436.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_1803 sugar ABC transporter permease YP_003113437.1 PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_1804 sugar ABC transporter solute- binding protein YP_003113438.1 KEGG: sco:SCO0664 hypothetical protein YP_003113439.1 PFAM: DeoR family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; SMART: DeoR family transcriptional regulator; KEGG: sgr:SGR_290 LacI family transcriptional regulator YP_003113440.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: sgr:SGR_2768 2-hydroxyacid family dehydrogenase YP_003113442.1 PFAM: CsbD family protein; KEGG: scl:sce0440 hypothetical protein YP_003113443.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: sen:SACE_6753 cyclopropane-fatty-acyl- phospholipid synthase YP_003113444.1 KEGG: rha:RHA1_ro04243 hypothetical protein YP_003113445.1 KEGG: slo:Shew_3371 hypothetical protein YP_003113446.1 KEGG: bac:BamMC406_4637 hypothetical protein YP_003113447.1 PFAM: alpha/beta hydrolase fold protein; PGAP1 family protein; KEGG: stp:Strop_0621 alpha/beta hydrolase fold protein YP_003113448.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sen:SACE_3775 LysR family transcriptional regulator YP_003113449.1 PFAM: NADPH-dependent FMN reductase; KEGG: bbr:BB2827 reductase YP_003113451.1 KEGG: sus:acid_3303 hypothetical protein YP_003113452.1 PFAM: glycosyl transferase family 28; KEGG: sma:SAV_7185 UDP-glucose:sterol glucosyltransferase YP_003113453.1 PFAM: legume lectin beta domain; pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone; KEGG: hypothetical protein YP_003113454.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL2091 transmembrane efflux protein YP_003113455.1 PFAM: TetR family transcriptional regulator; KEGG: sma:SAV_1068 TetR family transcriptional regulator YP_003113456.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicases; helicase; KEGG: sco:SCO5920 DEAD-box RNA helicase YP_003113457.1 PFAM: Cold-shock protein DNA-binding; ribonuclease B OB region domain; SMART: Cold shock protein; KEGG: sco:SCO3731 cold-shock protein YP_003113458.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sco:SCO4688 hypothetical protein YP_003113459.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: mbo:Mb0360 chaperone protein DnaJ1 YP_003113460.1 PFAM: heat shock protein Hsp20; KEGG: sma:SAV_459 heat shock protein YP_003113461.1 KEGG: sma:SAV_458 HSP18 transcriptional regulator YP_003113464.1 TIGRFAM: methyltransferase; PFAM: O-methyltransferase domain protein; KEGG: sco:SCO6443 hypothetical protein YP_003113465.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: sgr:SGR_6401 alcohol dehydrogenase YP_003113466.1 PFAM: aldehyde dehydrogenase; KEGG: sgr:SGR_6402 aldehyde dehydrogenase YP_003113467.1 PFAM: protein of unknown function DUF556; KEGG: sco:SCO6440 hypothetical protein YP_003113468.1 PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: sgr:SGR_6613 calcium-binding protein YP_003113469.1 PFAM: conserved hypothetical protein; KEGG: mhu:Mhun_1736 hypothetical protein YP_003113470.1 PFAM: sodium/hydrogen exchanger; KEGG: fal:FRAAL1809 Na+/H+ antiporter YP_003113471.1 PFAM: FAD dependent oxidoreductase; KEGG: sen:SACE_2961 fructosyl-amino acid oxidase YP_003113472.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: hsl:OE1807R threonine synthase YP_003113473.1 PFAM: AMP-dependent synthetase and ligase; KEGG: fra:Francci3_4204 AMP-dependent synthetase and ligase YP_003113474.1 KEGG: mav:MAV_1395 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase YP_003113475.1 KEGG: hypothetical protein YP_003113476.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sen:SACE_5381 3-oxoacyl-[acyl- carrier protein] reductase YP_003113477.1 PFAM: MbtH domain protein; KEGG: cvi:CV_2232 MbtH-like protein YP_003113478.1 PFAM: cytochrome P450; KEGG: sgr:SGR_3267 cytochrome P450 YP_003113479.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: bbt:BBta_4110 non-ribosomal peptide synthase YP_003113480.1 PFAM: tryptophan halogenase; monooxygenase FAD- binding; FAD dependent oxidoreductase; KEGG: fal:FRAAL4634 halogenase YP_003113481.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: saq:Sare_1270 LuxR family transcriptional regulator YP_003113482.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_1339 major facilitator superfamily permease YP_003113483.1 PFAM: Tetracyclin repressor domain protein; TetR family transcriptional regulator; KEGG: sco:SCO7624 TetR family transcriptional regulator YP_003113484.1 PFAM: alpha-L-arabinofuranosidase B catalytic; cellulose-binding family II; SMART: cellulose-binding family II; KEGG: fungal alpha-L-arabinofuranosidase YP_003113485.1 PFAM: alpha-L-arabinofuranosidase B catalytic; cellulose-binding family II; SMART: cellulose-binding family II; KEGG: fungal alpha-L-arabinofuranosidase YP_003113486.1 PFAM: hypothetical protein; KEGG: sco:SCO3883 inner membrane protein translocase component YidC YP_003113489.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: sen:SACE_3091 oxidoreductase, iron-sulphur binding subunit YP_003113490.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: sen:SACE_3092 xanthine dehydrogenase FAD- binding subunit YP_003113491.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: sen:SACE_3093 xanthine dehydrogenase molybdopterin binding subunit YP_003113492.1 PFAM: ricin B lectin; Ig family protein; KEGG: rso:RSc0115 hemagglutinin-related protein YP_003113493.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: sco:SCO0713 lipase (secreted protein) YP_003113494.1 KEGG: sgr:SGR_268 secreted metalloprotease YP_003113495.1 PFAM: protein of unknown function DUF574; KEGG: sma:SAV_4789 hypothetical protein YP_003113496.1 PFAM: condensation domain protein; KEGG: sgr:SGR_5180 hypothetical protein YP_003113498.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_1411 ABC transporter permease YP_003113499.1 PFAM: cellulose-binding family II; SMART: cellulose-binding family II; KEGG: tfu:Tfu_1627 cellulose 1,4-beta- cellobiosidase YP_003113500.1 PFAM: ricin B lectin; glycoside hydrolase family 30; Ig family protein; KEGG: hypothetical protein; K01201 glucosylceramidase YP_003113502.1 KEGG: hypothetical protein YP_003113503.1 TIGRFAM: hypothetical protein; KEGG: cja:CJA_0948 rhs repeat family YP_003113504.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: hau:Haur_1415 EmrB/QacA family drug resistance transporter YP_003113505.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fre:Franean1_7275 MarR family transcriptional regulator YP_003113506.1 KEGG: bvi:Bcep1808_4867 hypothetical protein YP_003113507.1 PFAM: TetR family transcriptional regulator; KEGG: fal:FRAAL0567 TetR family transcriptional regulator YP_003113508.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: sma:SAV_3894 integral membrane efflux protein YP_003113509.1 PFAM: protein of unknown function DUF1684; KEGG: aau:AAur_3731 protein of unknown function (DUF1684) YP_003113510.1 KEGG: kra:Krad_4134 hypothetical protein YP_003113511.1 PFAM: TetR family transcriptional regulator; KEGG: fal:FRAAL4423 TetR family transcriptional regulator YP_003113512.1 PFAM: Luciferase-like monooxygenase; KEGG: fre:Franean1_2345 luciferase family protein YP_003113513.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: fre:Franean1_4101 flavin reductase domain- containing protein YP_003113514.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rha:RHA1_ro04161 transcriptional regulator YP_003113515.1 PFAM: cupin; KEGG: sen:SACE_3354 hypothetical protein YP_003113516.1 KEGG: gur:Gura_1273 DsbA oxidoreductase YP_003113517.1 PFAM: extracellular solute-binding protein family 5; KEGG: fre:Franean1_2510 extracellular solute- binding protein YP_003113518.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: fre:Franean1_2511 binding-protein-dependent transporters inner membrane component YP_003113519.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: fre:Franean1_2512 binding-protein-dependent transporters inner membrane component YP_003113520.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fre:Franean1_2513 peptide ABC transporter ATPase YP_003113521.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fre:Franean1_2514 peptide ABC transporter ATPase YP_003113522.1 KEGG: fre:Franean1_2515 alkanesulfonate monooxygenase YP_003113523.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: tfu:Tfu_0340 trimethylamine-N-oxide reductase (cytochrome C) YP_003113524.1 PFAM: acyl-CoA dehydrogenase type 2 domain; acyl- CoA dehydrogenase domain protein; KEGG: fre:Franean1_2020 acyl-CoA dehydrogenase type 2 YP_003113525.1 PFAM: Luciferase-like monooxygenase; KEGG: sma:SAV_6696 monooxygenase YP_003113526.1 KEGG: fre:Franean1_2021 hypothetical protein YP_003113527.1 KEGG: fal:FRAAL4830 alkanesulfonate monooxygenase, FMNH(2)-dependent YP_003113528.1 PFAM: carbonic anhydrase; KEGG: mva:Mvan_4424 carbonic anhydrase YP_003113529.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: fal:FRAAL2382 ABC transporter substrate-binding protein YP_003113530.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: nca:Noca_4574 polar amino acid ABC transporter inner membrane subunit YP_003113531.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_6281 ABC transporter ATP-binding protein - glutamine transport YP_003113532.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sco:SCO5237 oxidoreductase YP_003113533.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO5238 TetR-family protein YP_003113534.1 PFAM: NB-ARC domain protein; SMART: helix-turn-helix domain protein; hypothetical protein; KEGG: stp:Strop_4244 transcriptional activator domain-containing protein YP_003113535.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO5516 integral membrane efflux protein YP_003113536.1 KEGG: sma:SAV_696 hypothetical protein YP_003113537.1 PFAM: extracellular solute-binding protein family 1; KEGG: hau:Haur_1243 extracellular solute-binding protein YP_003113538.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: hau:Haur_1244 binding-protein-dependent transport systems inner membrane component YP_003113539.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: hau:Haur_1245 binding-protein-dependent transport systems inner membrane component YP_003113540.1 PFAM: aminoglycoside phosphotransferase; KEGG: kra:Krad_2812 hypothetical protein YP_003113541.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fre:Franean1_3877 ABC transporter YP_003113542.1 PFAM: TetR family transcriptional regulator; KEGG: cmi:CMM_0190 TetR family transcriptional regulator YP_003113543.1 PFAM: alpha/beta hydrolase fold protein; KEGG: cmi:CMM_0189 hydrolase YP_003113544.1 KEGG: gvi:glr3809 hypothetical protein YP_003113545.1 KEGG: bpy:Bphyt_0480 hypothetical protein YP_003113546.1 PFAM: cellulose-binding family II; Fibronectin type III domain protein; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: bay:RBAM_018140 YnfF YP_003113547.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: sgr:SGR_2570 anti-anti-sigma regulatory factor YP_003113548.1 PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: sgr:SGR_2571 anti-sigma factor antagonist YP_003113549.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sgr:SGR_2572 anti-sigma factor YP_003113550.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sgr:SGR_2573 hypothetical protein YP_003113551.1 PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: sgr:SGR_2574 two-component system sensor kinase YP_003113552.1 PFAM: stage II sporulation E family protein; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein; KEGG: sgr:SGR_2575 hypothetical protein YP_003113553.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: sco:SCO3067 anti anti sigma factor YP_003113554.1 PFAM: ATP-binding region ATPase domain protein; KEGG: kra:Krad_1003 protein serine phosphatase with GAF(s) sensor(s) YP_003113555.1 KEGG: sde:Sde_3747 low molecular weight phosphotyrosine protein phosphatase YP_003113557.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: stp:Strop_3158 sigma-70 region 4 domain- containing protein YP_003113558.1 PFAM: antibiotic biosynthesis monooxygenase YP_003113559.1 KEGG: pde:Pden_4576 hypothetical protein YP_003113560.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: kra:Krad_2735 MerR family transcriptional regulator YP_003113562.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: pzu:PHZ_c1971 ArsR family transcriptional regulator YP_003113563.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: mlo:mll3774 hypothetical protein YP_003113564.1 KEGG: sdn:Sden_1132 transcription activator, effector binding YP_003113565.1 KEGG: sen:SACE_5672 hypothetical protein YP_003113566.1 KEGG: rba:RB12455 hypothetical protein YP_003113567.1 KEGG: saq:Sare_1923 hypothetical protein YP_003113570.1 TIGRFAM: adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: tko:TK1179 adenylate cyclase, class 2 YP_003113571.1 SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_5332 XRE family transcriptional regulator YP_003113575.1 KEGG: rha:RHA1_ro08116 hypothetical protein YP_003113578.1 KEGG: kaz; kazrin YP_003113579.1 PFAM: glycoside hydrolase family 25; KEGG: rha:RHA1_ro08409 glycosyl hydrolase YP_003113580.1 KEGG: lla:L197961 hypothetical protein YP_003113581.1 KEGG: lxx:Lxx12890 hypothetical protein YP_003113582.1 PFAM: lipolytic protein G-D-S-L family; KEGG: sma:SAV_1965 secreted protein YP_003113585.1 KEGG: saq:Sare_3757 hypothetical protein YP_003113586.1 KEGG: bph:Bphy_1861 hypothetical protein YP_003113587.1 KEGG: kra:Krad_1710 transglycosylase domain- containing protein YP_003113596.1 KEGG: H02F09.3 YP_003113597.1 KEGG: azc:AZC_1915 hypothetical protein YP_003113599.1 KEGG: rec:RHECIAT_CH0002516 outer membrane protein, OmpA family YP_003113600.1 KEGG: LOC763311; similar to egg bindin receptor 1 precursor YP_003113601.1 KEGG: lsp:Bsph_2053 hypothetical protein YP_003113602.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: cth:Cthe_2866 phage major capsid protein, HK97 YP_003113603.1 PFAM: peptidase S14 ClpP; KEGG: apa:APP7_0491 Clp-like protease YP_003113604.1 PFAM: portal protein; KEGG: mem:Memar_1247 MCM family protein YP_003113606.1 KEGG: fal:FRAAL2741 hypothetical protein YP_003113621.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: fra:Francci3_0138 cell divisionFtsK/SpoIIIE YP_003113622.1 KEGG: ote:Oter_1689 cell wall surface anchor family protein YP_003113624.1 KEGG: sen:SACE_7171 mucin-associated surface protein YP_003113625.1 KEGG: rci:RRC34 hypothetical protein YP_003113630.1 KEGG: fra:Francci3_1989 PAS/PAC sensor protein YP_003113640.1 PFAM: GntR family transcriptional regulator; UbiC transcription regulator-associated domain protein; SMART: GntR family transcriptional regulator; KEGG: saq:Sare_0152 GntR family transcriptional regulator YP_003113641.1 PFAM: UbiC transcription regulator-associated domain protein; KEGG: saq:Sare_0151 UbiC transcription regulator- associated domain-containing protein YP_003113645.1 PFAM: DnaB domain protein helicase; KEGG: sco:SCO3911 replicative DNA helicase YP_003113646.1 PFAM: UbiC transcription regulator-associated domain protein; KEGG: sco:SCO4215 GntR family regulatory protein YP_003113649.1 KEGG: DNJ31; DnaJ-like protein YP_003113650.1 KEGG: cau:Caur_2944 hypothetical protein YP_003113654.1 KEGG: sco:SCP2.37 hypothetical protein YP_003113655.1 KEGG: sco:SCP2.14c DNA-binding protein YP_003113671.1 KEGG: sgr:SGR_3587 hypothetical protein YP_003113674.1 KEGG: sma:SAV_5908 hypothetical protein YP_003113677.1 PFAM: conserved hypothetical protein; KEGG: sma:SAV_2593 hypothetical protein YP_003113678.1 KEGG: hypothetical protein YP_003113680.1 SMART: Appr-1-p processing domain protein; KEGG: sgr:SGR_991 hypothetical protein YP_003113684.1 KEGG: nfa:nfa40200 hypothetical protein YP_003113690.1 PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase; KEGG: tfu:Tfu_3003 O-methyltransferase YP_003113695.1 KEGG: nfa:nfa39990 hypothetical protein YP_003113702.1 KEGG: saq:Sare_4353 Ku family containing protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein YP_003113706.1 KEGG: saq:Sare_0942 hypothetical protein YP_003113712.1 KEGG: sco:SCO3714 transposase; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB YP_003113722.1 KEGG: nfa:nfa39530 phage polynucleotide kinase YP_003113723.1 KEGG: rlt:Rleg2_5631 hypothetical protein YP_003113727.1 KEGG: VWF1; hypothetical protein containing von Willebrand factor and highly repetitive sequences YP_003113751.1 KEGG: abo:ABO_0763 hypothetical protein YP_003113755.1 KEGG: GOLGA5; golgi autoantigen, golgin subfamily a, 5 YP_003113761.1 KEGG: lsp:Bsph_2422 hypothetical protein YP_003113763.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: rxy:Rxyl_0882 LuxR family transcriptional regulator YP_003113764.1 PFAM: transcription factor WhiB; KEGG: sco:SCO5240 hypothetical protein YP_003113767.1 KEGG: sma:SAP1p60 hypothetical protein YP_003113770.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: kra:Krad_4338 single-strand binding protein YP_003113772.1 KEGG: fgenesh4_pg.C_scaffold_20282000001. YP_003113775.1 KEGG: mkm:Mkms_4301 hypothetical protein YP_003113776.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: dsy:DSY3419 hypothetical protein YP_003113780.1 KEGG: mmi:MMAR_3923 hypothetical protein YP_003113781.1 PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: lbl:LBL_1865 ParB-like protein YP_003113782.1 PFAM: protein of unknown function DUF1643; KEGG: smd:Smed_1928 protein of unknown function DUF1643 YP_003113783.1 KEGG: hypothetical protein YP_003113785.1 KEGG: nfa:nfa40410 hypothetical protein YP_003113786.1 KEGG: nfa:nfa40410 hypothetical protein YP_003113787.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: cms:CMS_pCSL0052 DNA modification methylase YP_003113788.1 PFAM: endodeoxyribonuclease RusA; KEGG: lxx:Lxx23920 hypothetical protein YP_003113791.1 PFAM: Gp37Gp68 family protein; KEGG: nfa:nfa39500 hypothetical protein YP_003113793.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: mgi:Mflv_5555 D12 class N6 adenine-specific DNA methyltransferase YP_003113795.1 KEGG: mkm:Mkms_2959 HNH endonuclease YP_003113797.1 TIGRFAM: RecT protein; PFAM: RecT protein; KEGG: stp:Strop_4008 RecT protein YP_003113798.1 KEGG: mmi:MMAR_3929 hypothetical protein YP_003113804.1 KEGG: mpa:MAP0041 hypothetical protein YP_003113808.1 KEGG: sma:SAV_3728 integrase YP_003113809.1 KEGG: sma:SAV_6524 GTP-binding protein EngA; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; SMART: ATPase AAA YP_003113810.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: sco:SCO1759 transferase YP_003113811.1 TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: sgr:SGR_5739 cytidylate kinase YP_003113812.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ace:Acel_1455 glyoxalase/bleomycin resistance protein/dioxygenase YP_003113813.1 KEGG: sma:SAV_2261 hypothetical protein YP_003113814.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: sgr:SGR_3628 Dyp-type peroxidase family protein YP_003113815.1 PFAM: copper resistance protein CopC; copper resistance D domain protein; KEGG: sgr:SGR_3627 integral membrane protein YP_003113816.1 PFAM: protein of unknown function DUF461; KEGG: sco:SCO3965 hypothetical protein YP_003113817.1 PFAM: electron transporter SCO1/SenC; KEGG: fra:Francci3_2499 electron transporter SCO1/SenC YP_003113818.1 PFAM: nuclear export factor GLE1; KEGG: sco:SCO3967 hypothetical protein YP_003113819.1 KEGG: sma:SAV_899 hypothetical protein YP_003113820.1 KEGG: sco:SCO1027 hypothetical protein YP_003113821.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sco:SCO0542 regulatory protein YP_003113822.1 KEGG: tfu:Tfu_0164 hypothetical protein YP_003113823.1 KEGG: fal:FRAAL6607 hypothetical protein YP_003113824.1 KEGG: hypothetical protein YP_003113825.1 PFAM: protein of unknown function DUF58; KEGG: sco:SCO6133 hypothetical protein YP_003113826.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; KEGG: rha:RHA1_ro04527 magnesium chelatase YP_003113827.1 KEGG: sco:SCO6135 hypothetical protein YP_003113828.1 KEGG: sco:SCO6136 transmembrane protein YP_003113830.1 PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: mbb:BCG_2653c hypothetical protein YP_003113831.1 PFAM: substrate-binding region of ABC-type glycine betaine transporter; KEGG: sma:SAV_2178 ABC transporter substrate- binding protein YP_003113832.1 SMART: rhodanese; KEGG: sen:SACE_6210 rhodanese-like YP_003113833.1 PFAM: cysteine dioxygenase type I; KEGG: sen:SACE_6209 cysteine dioxygenase YP_003113834.1 PFAM: substrate-binding region of ABC-type glycine betaine transporter; KEGG: sma:SAV_2178 ABC transporter substrate- binding protein YP_003113835.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO6064 ABC transporter permease YP_003113836.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO6063 ABC transporter permease YP_003113837.1 KEGG: sco:SCO6062 ABC transporter ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter ATPase subunit; PFAM: ABC transporter; SMART: ATPase AAA YP_003113838.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: rha:RHA1_ro04690 2-nitropropane dioxygenase YP_003113839.1 activates fatty acids by binding to coenzyme A YP_003113840.1 PFAM: protein of unknown function DUF35; KEGG: nca:Noca_2732 hypothetical protein YP_003113841.1 KEGG: sgr:SGR_6834 nonspecific lipid- transfer protein YP_003113842.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_003113843.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: art:Arth_0750 ABC transporter YP_003113844.1 KEGG: rci:RRC32 hypothetical protein YP_003113845.1 KEGG: afw:Anae109_1018 hypothetical protein YP_003113846.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: sma:SAV_6269 hypothetical protein YP_003113847.1 KEGG: tfu:Tfu_1073 primosome assembly protein PriA YP_003113848.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_003113849.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: sco:SCO1473 methionyl-tRNA formyltransferase YP_003113850.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: sma:SAV_6878 RNA-binding Sun protein YP_003113851.1 PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: sma:SAV_255 metallopeptidase YP_003113852.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: kra:Krad_4254 short-chain dehydrogenase/reductase SDR YP_003113853.1 PFAM: AMP-dependent synthetase and ligase; KEGG: nfa:nfa41500 acyl-CoA synthetase YP_003113854.1 SMART: regulatory protein LuxR; KEGG: sma:SAV_2081 LuxR family transcriptional regulator YP_003113855.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_003113856.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sgr:SGR_2194 serine/threonine protein kinase YP_003113857.1 TIGRFAM: riboflavin synthase, subunit alpha; PFAM: Lumazine-binding protein; KEGG: sgr:SGR_6090 riboflavin synthase subunit alpha YP_003113858.1 KEGG: fre:Franean1_1724 bifunctional 3,4-dihydroxy- 2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2- butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_003113859.1 KEGG: sma:SAV_6905 riboflavin synthase subunit beta; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_003113860.1 TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: tfu:Tfu_0175 phosphoribosyl-ATP pyrophosphatase YP_003113861.1 PFAM: cell wall binding repeat 2- containing protein; KEGG: ace:Acel_1679 protease-like YP_003113862.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_003113863.1 KEGG: sco:SCO1437 hypothetical protein YP_003113864.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: sgr:SGR_2670 LysE-type translocator YP_003113865.1 PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_0437 long-chain-fatty-acid--CoA ligase YP_003113866.1 PFAM: Ketopantoate reductase ApbA/PanE domain protein; KEGG: kra:Krad_4304 2-dehydropantoate 2-reductase YP_003113867.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sgr:SGR_2995 RNA polymerase ECF-subfamily sigma factor YP_003113868.1 KEGG: fre:Franean1_7283 hypothetical protein YP_003113869.1 KEGG: sgr:SGR_6130 hypothetical protein YP_003113870.1 PFAM: protein of unknown function DUF35; KEGG: mgi:Mflv_3567 hypothetical protein YP_003113871.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: afe:Lferr_1679 MarR family transcriptional regulator YP_003113872.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sco:SCO1389 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyl-transferase YP_003113873.1 PFAM: protein of unknown function DUF881; KEGG: sma:SAV_6978 hypothetical protein YP_003113875.1 PFAM: protein of unknown function DUF1290; KEGG: kra:Krad_3099 hypothetical protein YP_003113876.1 PFAM: protein of unknown function DUF881; KEGG: sgr:SGR_6144 hypothetical protein YP_003113877.1 TIGRFAM: glycine cleavage system protein H; PFAM: glycine cleavage H-protein; KEGG: mav:MAV_2889 glycine cleavage system protein H YP_003113878.1 PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: fra:Francci3_1468 FHA domain-containing protein YP_003113879.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: ace:Acel_1225 MerR family transcriptional regulator YP_003113880.1 PFAM: protein of unknown function DUF151; KEGG: sco:SCO1382 hypothetical protein YP_003113881.1 SMART: regulatory protein MerR; KEGG: mgi:Mflv_3399 MerR family transcriptional regulator YP_003113882.1 PFAM: protein of unknown function DUF218; KEGG: sma:SAV_5672 integral membrane protein YP_003113883.1 KEGG: rha:RHA1_ro05939 hypothetical protein YP_003113884.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: sco:SCO3921 low molecular weight protein- tyrosine-phosphatase YP_003113885.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nfa:nfa31570 short chain dehydrogenase YP_003113886.1 PFAM: YCII-related; KEGG: nca:Noca_0396 DGPFAETKE family protein YP_003113887.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: nca:Noca_4614 sigma-70 region 2 domain- containing protein YP_003113888.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_003113889.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr6921 multidrug resistance protein YP_003113890.1 KEGG: lpl:lp_1332 integral membrane protein YP_003113891.1 KEGG: sen:SACE_1087 PE-PGRS family protein YP_003113892.1 KEGG: GG15162 gene product from transcript GG15162- RA; K02360 a component of the cytoplasm (encore) YP_003113893.1 KEGG: cef:CE0583 hypothetical protein YP_003113895.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: stp:Strop_0474 cell divisionFtsK/SpoIIIE YP_003113896.1 KEGG: rci:RRC32 hypothetical protein YP_003113897.1 PFAM: conserved hypothetical protein; KEGG: asa:ASA_2087 hypothetical protein YP_003113898.1 TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: saq:Sare_0940 hypothetical protein YP_003113899.1 KEGG: sgr:SGR_1794 hypothetical protein YP_003113900.1 PFAM: protein of unknown function DUF690; KEGG: saq:Sare_0941 hypothetical protein YP_003113901.1 PFAM: BAAT/acyl-CoA thioester hydrolase; KEGG: mlo:mlr4383 acyl-CoA thioesterase YP_003113902.1 PFAM: ATP-binding region ATPase domain protein; KEGG: dge:Dgeo_1706 periplasmic sensor signal transduction histidine kinase YP_003113903.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: nca:Noca_2943 LuxR family transcriptional regulator YP_003113904.1 PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; ATPase AAA; KEGG: fal:FRAAL0335 LuxR family transcriptional regulator YP_003113905.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3893 binding-protein-dependent transport systems inner membrane component YP_003113906.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3894 binding-protein-dependent transport systems inner membrane component YP_003113907.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3895 extracellular solute-binding protein, family 1 YP_003113908.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: rxy:Rxyl_2316 bifunctional deaminase- reductase-like protein YP_003113909.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_003113910.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: sco:SCO7782 IS110 transposase YP_003113911.1 SMART: pyrrolo-quinoline quinone; KEGG: sgr:SGR_4365 hypothetical protein YP_003113912.1 KEGG: mrd:Mrad2831_2663 hypothetical protein YP_003113914.1 PFAM: ricin B lectin; PKD domain containing protein; carbohydrate-binding CenC domain protein; SMART: PKD domain containing protein; ricin B lectin; KEGG: sgr:SGR_7130t hypothetical protein YP_003113915.1 TIGRFAM: hypothetical protein; PFAM: YD repeat-containing protein; KEGG: stp:Strop_1054 hypothetical protein YP_003113916.1 PFAM: glycoside hydrolase; KEGG: hypothetical protein YP_003113917.1 PFAM: Luciferase-like monooxygenase; KEGG: art:Arth_3897 luciferase family protein YP_003113918.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: sma:SAV_3860 iron/ascorbate-dependent oxidoreductase YP_003113919.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sgr:SGR_4773 UvrA-like protein YP_003113920.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_3702 glyoxalase/bleomycin resistance protein/dioxygenase YP_003113921.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fre:Franean1_4177 AraC family transcriptional regulator YP_003113922.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro07099 hypothetical protein YP_003113923.1 KEGG: extracellular threonine rich protein YP_003113924.1 PFAM: Luciferase-like monooxygenase; KEGG: rxy:Rxyl_0369 luciferase-like protein YP_003113925.1 PFAM: TetR family transcriptional regulator; KEGG: fre:Franean1_5908 TetR family transcriptional regulator YP_003113926.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_4243 EmrB/QacA family drug resistance transporter YP_003113928.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: sco:SCO7775 secreted protein YP_003113929.1 PFAM: LysR substrate-binding; KEGG: sma:SAV_1185 LysR family trancsriptional regulator YP_003113930.1 KEGG: sma:SAV_1186 hypothetical protein YP_003113931.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; peptidoglycan-binding protein; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: sen:SACE_3731 hypothetical protein YP_003113932.1 PFAM: radical SAM protein; KEGG: sgr:SGR_1163 hypothetical protein YP_003113933.1 KEGG: sil:SPO3350 hypothetical protein YP_003113934.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_003113935.1 PFAM: peptidase C60 sortase A and B; KEGG: sma:SAV_5663 secreted protein YP_003113936.1 KEGG: saq:Sare_3984 hypothetical protein YP_003113937.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: eba:ebA5761 oxidoreductase, zinc- containing alcohol dehydrogenase YP_003113938.1 PFAM: aminotransferase class V; KEGG: rha:RHA1_ro05699 cysteine desulfurase YP_003113940.1 KEGG: sgr:SGR_4684 hypothetical protein YP_003113941.1 PFAM: hypothetical protein; KEGG: sco:SCO2851 membrane protein YP_003113942.1 PFAM: protein of unknown function DUF664; KEGG: sco:SCO4342 hypothetical protein YP_003113943.1 PFAM: periplasmic solute binding protein; KEGG: fra:Francci3_2479 periplasmic solute binding protein YP_003113944.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fra:Francci3_2478 ABC transporter YP_003113945.1 PFAM: ABC transporter; KEGG: fra:Francci3_2477 hypothetical protein YP_003113946.1 PFAM: ABC transporter; KEGG: fra:Francci3_2476 hypothetical protein YP_003113947.1 PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_4976 major facilitator transporter YP_003113948.1 SMART: ArsR family transcriptional regulator; KEGG: sen:SACE_0697 ArsR family transcriptional regulator YP_003113949.1 PFAM: protein of unknown function DUF574; KEGG: fra:Francci3_1003 hypothetical protein YP_003113950.1 PFAM: copper resistance protein CopC; copper resistance D domain protein; KEGG: fra:Francci3_4174 copper resistance protein CopC YP_003113951.1 KEGG: mgi:Mflv_1976 hypothetical protein YP_003113952.1 KEGG: hau:Haur_2372 cellulose-binding family II protein YP_003113953.1 PFAM: aldo/keto reductase; KEGG: sma:SAV_1172 oxidoreductase YP_003113954.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_3962 ABC transporter ATP-binding protein YP_003113955.1 PFAM: protein of unknown function DUF1503; KEGG: sma:SAV_3579 hypothetical protein YP_003113956.1 PFAM: UspA domain protein; KEGG: sco:SCO0937 hypothetical protein YP_003113957.1 PFAM: conserved hypothetical protein; KEGG: sma:SAV_2751 hypothetical protein YP_003113958.1 KEGG: similar to syntaxin binding protein YP_003113959.1 KEGG: sgr:SGR_711 integral membrane protein YP_003113960.1 PFAM: peptidase S45 penicillin amidase; coagulation factor 5/8 type domain protein; SMART: coagulation factor 5/8 type domain protein; KEGG: sma:SAV_6608 penicillin acylase YP_003113961.1 PFAM: TetR family transcriptional regulator; KEGG: nca:Noca_2098 TetR family transcriptional regulator YP_003113962.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: stp:Strop_2211 glyoxalase/bleomycin resistance protein/dioxygenase YP_003113963.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: msm:MSMEG_1799 transcriptional regulator YP_003113964.1 PFAM: FAD dependent oxidoreductase; HI0933 family protein; KEGG: bxe:Bxe_C0878 hypothetical protein YP_003113965.1 KEGG: sen:SACE_5329 transcriptional regulator YP_003113966.1 KEGG: sen:SACE_7282 secreted hydrolase YP_003113967.1 KEGG: mxa:MXAN_6381 hypothetical protein YP_003113969.1 KEGG: fal:FRAAL2144 preprotein translocase subunit SecD YP_003113970.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: rha:RHA1_ro02297 acyl CoA dehydrogenase YP_003113971.1 PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa11020 transcriptional regulator YP_003113972.1 PFAM: monooxygenase FAD-binding; KEGG: nfa:nfa11030 monooxygenase YP_003113973.1 PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rha:RHA1_ro00298 AraC family transcriptional regulator YP_003113974.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: rha:RHA1_ro00299 hypothetical protein YP_003113975.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: spe:Spro_2613 alcohol dehydrogenase YP_003113976.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: sco:SCO0927 LysR family transcriptional regulator YP_003113978.1 KEGG: sus:acid_7132 hypothetical protein YP_003113979.1 PFAM: Amylo-alpha-16-glucosidase; KEGG: scl:sce2296 4-alpha-glucanotransferase YP_003113980.1 PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: sen:SACE_6200 transferase YP_003113981.1 KEGG: ace:Acel_0676 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase all-beta; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003113982.1 KEGG: sgr:SGR_5343 two-component system sensor kinase YP_003113983.1 KEGG: mva:Mvan_3627 hypothetical protein YP_003113984.1 KEGG: stp:Strop_4199 hypothetical protein YP_003113985.1 KEGG: saq:Sare_4703 hypothetical protein YP_003113986.1 KEGG: mab:MAB_4885 hypothetical protein YP_003113988.1 KEGG: sgr:SGR_4257 DNA-binding protein YP_003113989.1 PFAM: condensation domain protein; KEGG: sgr:SGR_5180 hypothetical protein YP_003113991.1 PFAM: condensation domain protein; KEGG: sgr:SGR_5180 hypothetical protein YP_003113992.1 PFAM: condensation domain protein; KEGG: sgr:SGR_5180 hypothetical protein YP_003113993.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: fre:Franean1_1674 NAD-dependent epimerase/dehydratase YP_003113994.1 KEGG: hau:Haur_2410 daunorubicin resistance ABC transporter ATPase; TIGRFAM: daunorubicin resistance ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003113995.1 PFAM: ABC transporter; KEGG: hau:Haur_2409 ABC-2 type transporter YP_003113996.1 TIGRFAM: glycosyltransferase, MGT family; PFAM: glycosyltransferase 28 domain; UDP- glucuronosyl/UDP-glucosyltransferase; glycosyl transferase family 28; KEGG: fra:Francci3_0930 glycosyl transferase family protein YP_003113997.1 PFAM: methyltransferase type 11; cyclopropane-fatty- acyl-phospholipid synthase; thiopurine S-methyltransferase; methyltransferase type 12; KEGG: cyb:CYB_2403 cyclopropane-fatty-acyl- phospholipid synthase family protein YP_003113998.1 PFAM: AMP-dependent synthetase and ligase; KEGG: saq:Sare_2681 AMP-dependent synthetase and ligase YP_003113999.1 KEGG: saq:Sare_2679 hypothetical protein YP_003114000.1 KEGG: saq:Sare_2678 hypothetical protein YP_003114001.1 PFAM: beta-ketoacyl synthase; KEGG: saq:Sare_2677 beta-ketoacyl synthase YP_003114002.1 KEGG: saq:Sare_2676 hypothetical protein YP_003114003.1 PFAM: beta-ketoacyl synthase; KEGG: saq:Sare_2674 beta-ketoacyl synthase YP_003114004.1 KEGG: saq:Sare_2673 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase YP_003114005.1 PFAM: phytanoyl-CoA dioxygenase; KEGG: saq:Sare_2672 phytanoyl-CoA dioxygenase YP_003114006.1 KEGG: saq:Sare_2671 hypothetical protein YP_003114007.1 PFAM: dehydrogenase E1 component; KEGG: saq:Sare_2670 dehydrogenase E1 component YP_003114008.1 PFAM: transketolase; transketolase domain protein; KEGG: saq:Sare_2669 transketolase YP_003114009.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mgi:Mflv_1267 short-chain dehydrogenase/reductase SDR YP_003114010.1 PFAM: AMP-dependent synthetase and ligase; KEGG: saq:Sare_2675 AMP-dependent synthetase and ligase YP_003114011.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: saq:Sare_0484 3-oxoacyl-(ACP) synthase III YP_003114012.1 PFAM: phosphopantetheine-binding; KEGG: saq:Sare_0487 phosphopantetheine-binding YP_003114013.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: saq:Sare_0496 (S)-2-hydroxy-acid oxidase YP_003114014.1 PFAM: aminotransferase class I and II; KEGG: saq:Sare_2660 GntR family transcriptional regulator YP_003114015.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: saq:Sare_0492 4'-phosphopantetheinyl transferase YP_003114016.1 PFAM: lipolytic protein G-D-S-L family; KEGG: saq:Sare_2667 GDSL family lipase YP_003114017.1 PFAM: alpha/beta hydrolase fold protein-3 domain protein; KEGG: saq:Sare_2662 alpha/beta hydrolase domain- containing protein YP_003114018.1 PFAM: amino acid permease-associated region; KEGG: sen:SACE_2016 L-asparagine permease YP_003114019.1 PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL5326 hypothetical protein YP_003114020.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fal:FRAAL5327 MarR family transcriptional regulator YP_003114021.1 PFAM: carbonic anhydrase; KEGG: sez:Sez_0225 carbonic anhydrase YP_003114022.1 PFAM: TetR family transcriptional regulator; KEGG: aav:Aave_4615 TetR family transcriptional regulator YP_003114023.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: nfa:nfa31920 serine/threonine protein kinase YP_003114024.1 KEGG: mva:Mvan_0781 transmembrane anti- sigma factor YP_003114025.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: afw:Anae109_3622 ECF subfamily RNA polymerase sigma-24 factor YP_003114026.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sen:SACE_3735 alcohol dehydrogenase, zinc- binding YP_003114027.1 PFAM: TetR family transcriptional regulator; KEGG: lsp:Bsph_2437 TetR family transcriptional regulator YP_003114028.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sma:SAV_1851 dehydrogenase YP_003114029.1 KEGG: sma:SAV_6179 integral membrane protein YP_003114030.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_B0631 hypothetical protein YP_003114031.1 PFAM: glycosyl transferase group 1; KEGG: sen:SACE_6905 glycosyl transferase, group 1 YP_003114032.1 KEGG: ppw:PputW619_1009 deacetylase YP_003114033.1 PFAM: glycosyl transferase group 1; KEGG: pac:PPA1824 glycosyl transferase YP_003114034.1 PFAM: TetR family transcriptional regulator; KEGG: saq:Sare_3165 TetR family transcriptional regulator YP_003114035.1 KEGG: sco:SCO0503 hypothetical protein YP_003114036.1 KEGG: stp:Strop_2943 hypothetical protein YP_003114037.1 KEGG: hch:HCH_03033 hypothetical protein YP_003114038.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: tfu:Tfu_0082 esterase, PHB depolymerase YP_003114039.1 PFAM: protein of unknown function DUF574; KEGG: fal:FRAAL4035 hypothetical protein YP_003114040.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3- methyltransferase; KEGG: sco:SCO7528 hypothetical protein YP_003114041.1 PFAM: hypothetical protein; protein of unknown function UPF0074; KEGG: sgr:SGR_6851 DeoR family transcriptional regulator YP_003114042.1 PFAM: coagulation factor 5/8 type domain protein; SMART: coagulation factor 5/8 type domain protein; Parallel beta-helix repeat; KEGG: sma:SAV_1723 mycodextranase YP_003114043.1 PFAM: amino acid permease-associated region; KEGG: acr:Acry_0648 amino acid permease-associated region YP_003114044.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sma:SAV_1356 GntR family transcriptional regulator YP_003114045.1 PFAM: major facilitator superfamily MFS_1; KEGG: rrs:RoseRS_3797 major facilitator transporter YP_003114046.1 KEGG: sco:SCO5396 cellulose-binding protein YP_003114047.1 PFAM: amino acid permease-associated region; KEGG: acr:Acry_0648 amino acid permease-associated region YP_003114048.1 KEGG: cms:CMS_2154 secreted protein YP_003114049.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mlo:mlr1976 transcriptional regulator YP_003114050.1 PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: rle:RL1385 short-chain dehydrogenase/oxidoreductase YP_003114052.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: mav:MAV_2145 Na+/H+ antiporter YP_003114053.1 KEGG: sgr:SGR_3077 hypothetical protein YP_003114054.1 PFAM: beta-lactamase; KEGG: sus:acid_4423 beta-lactamase domain- containing protein YP_003114055.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO4482 LysR family transcriptional regulator YP_003114056.1 KEGG: hypothetical protein YP_003114057.1 KEGG: ade:Adeh_3125 alpha/beta hydrolase fold protein-1 YP_003114058.1 KEGG: clec-122; C-type LECtin YP_003114059.1 KEGG: sco:SCO0566 hypothetical protein YP_003114060.1 PFAM: polyprenyl synthetase; KEGG: sgr:SGR_6931 polyprenyl synthetase YP_003114061.1 KEGG: sco:SCO0564 hypothetical protein YP_003114062.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; nitrate and nitrite sensing domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sgr:SGR_1525 sensor-like histidine kinase YP_003114063.1 PFAM: Roadblock/LC7 family protein; KEGG: saq:Sare_0761 roadblock/LC7 family protein YP_003114064.1 PFAM: protein of unknown function ATP binding; KEGG: stp:Strop_0819 protein of unknown function, ATP binding YP_003114065.1 PFAM: extracellular ligand-binding receptor; KEGG: sgr:SGR_1527 branched-chain amino acid ABC transporter substrate-binding protein YP_003114066.1 PFAM: inner-membrane translocator; KEGG: sgr:SGR_1528 branched-chain amino acid ABC transporter permease YP_003114067.1 PFAM: inner-membrane translocator; KEGG: sgr:SGR_1528 branched-chain amino acid ABC transporter permease YP_003114068.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sgr:SGR_1529 branched-chain amino acid ABC transporter ATP-binding protein YP_003114069.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sgr:SGR_1530 branched-chain amino acid ABC transporter ATP-binding protein YP_003114070.1 KEGG: stp:Strop_1038 hypothetical protein YP_003114071.1 PFAM: aldo/keto reductase; KEGG: dge:Dgeo_2171 aldo/keto reductase YP_003114072.1 PFAM: glycosidase PH1107-related; KEGG: mva:Mvan_1054 glycosidase, PH1107-related YP_003114073.1 PFAM: HesB/YadR/YfhF-family protein; KEGG: ace:Acel_1878 HesB/YadR/YfhF-family protein YP_003114074.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: sen:SACE_4177 hypothetical protein YP_003114075.1 KEGG: rca:Rcas_2588 hypothetical protein YP_003114076.1 KEGG: sma:SAV_1085 two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein YP_003114077.1 PFAM: stage II sporulation E family protein; ANTAR domain protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; KEGG: fre:Franean1_6994 PAS/PAC sensor protein YP_003114078.1 KEGG: fal:FRAAL0832 anti-sigma factor YP_003114079.1 KEGG: gbe:GbCGDNIH1_2146 hypothetical protein YP_003114080.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; HI0933 family protein; KEGG: scl:sce2246 hypothetical protein YP_003114081.1 PFAM: UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: aau:AAur_1207 GntR family transcriptional regulator YP_003114082.1 KEGG: mgi:Mflv_1080 extracellular solute-binding protein YP_003114083.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: mjl:Mjls_5506 binding-protein-dependent transport systems inner membrane component YP_003114084.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: mkm:Mkms_5214 binding-protein-dependent transport systems inner membrane component YP_003114085.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: msm:MSMEG_6521 sulfate/thiosulfate import ATP- binding protein CysA 2 YP_003114086.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: fal:FRAAL2583 hypothetical protein YP_003114087.1 KEGG: sma:SAV_5975 hypothetical protein YP_003114088.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: sco:SCO7822 prolipoprotein diacylglyceryl transferase YP_003114089.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: met:M446_5147 TrmB family transcriptional regulator YP_003114090.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: lci:LCK_00777 NADPH-quinone reductase (modulator of drug activity B) YP_003114091.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: sco:SCO0838 hypothetical protein YP_003114092.1 KEGG: npu:Npun_F3678 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein YP_003114093.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: nfa:nfa32760 monooxygenase YP_003114094.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sma:SAV_590 cytidine/deoxycytidine deaminase YP_003114095.1 KEGG: fra:Francci3_0852 hypothetical protein YP_003114096.1 KEGG: sma:SAV_6532 hypothetical protein YP_003114097.1 KEGG: sma:SAV_6531 hypothetical protein YP_003114098.1 PFAM: inner-membrane translocator; KEGG: sma:SAV_7582 ABC transporter permease YP_003114099.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_6530 ABC transporter ATP-binding protein YP_003114100.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_6529 ABC transporter ATP-binding protein YP_003114101.1 KEGG: mva:Mvan_0250 hypothetical protein YP_003114102.1 KEGG: sma:SAV_4548 hypothetical protein YP_003114103.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO7703 integral membrane transporter YP_003114104.1 PFAM: Arsenical pump membrane protein; citrate transporter; KEGG: sco:SCO7367 membrane efflux protein YP_003114105.1 KEGG: cma:Cmaq_1265 hypothetical protein YP_003114106.1 KEGG: saq:Sare_2270 hypothetical protein YP_003114107.1 PFAM: oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: sen:SACE_2727 oxidoreductase FAD-binding region YP_003114108.1 PFAM: oxidoreductase molybdopterin binding; KEGG: fre:Franean1_5578 oxidoreductase molybdopterin binding YP_003114109.1 PFAM: cytochrome P450; KEGG: sen:SACE_1426 cytochrome P450-like enzyme YP_003114110.1 KEGG: GP1; vegetative cell wall protein gp1 YP_003114111.1 PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: sen:SACE_7372 acyl-CoA oxidase YP_003114112.1 PFAM: esterase; KEGG: sgr:SGR_4096 hypothetical protein YP_003114113.1 KEGG: cmi:CMM_1969 hypothetical protein YP_003114114.1 KEGG: fal:FRAAL3957 hypothetical protein YP_003114115.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; KEGG: vvu:VV2_1416 NADH-flavin reductase YP_003114116.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: saq:Sare_0800 ECF subfamily RNA polymerase sigma-24 factor YP_003114117.1 KEGG: bpu:BPUM_1804 triple helix repeat-containing collagen YP_003114118.1 KEGG: sma:SAV_1090 hypothetical protein YP_003114119.1 PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; KEGG: sma:SAV_955 pyruvate dehydrogenase/oxidase FAD and thiamine PPi cofactors YP_003114120.1 KEGG: ace:Acel_0086 hypothetical protein YP_003114121.1 KEGG: aba:acid345_3971 secreted protein YP_003114122.1 KEGG: hypothetical protein YP_003114123.1 PFAM: peptidase S53 propeptide; KEGG: rsa:RSal33209_3166 pseudomonapepsin precursor YP_003114124.1 PFAM: regulatory protein MarR; KEGG: saq:Sare_4678 ArsR family transcriptional regulator YP_003114125.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sgr:SGR_718 RNA polymerase ECF-subfamily sigma factor YP_003114126.1 KEGG: saq:Sare_1979 transposase IS4 family protein YP_003114127.1 KEGG: met:M446_0744 methyl-accepting chemotaxis sensory transducer YP_003114128.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sma:SAV_2179 sensor-like histidine kinase YP_003114129.1 PFAM: Roadblock/LC7 family protein; KEGG: sma:SAV_2180 hypothetical protein YP_003114130.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: msm:MSMEG_1200 serine/threonine-protein kinase PknD YP_003114131.1 KEGG: aau:AAur_3560 hypothetical protein YP_003114132.1 KEGG: rsa:RSal33209_2584 acid proteinase YP_003114133.1 KEGG: sen:SACE_2039 hypothetical protein YP_003114135.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: sco:SCO7118 hypothetical protein YP_003114136.1 PFAM: ribonuclease BN; KEGG: sco:SCO7414 integral membrane protein YP_003114137.1 PFAM: transaldolase; KEGG: rxy:Rxyl_0048 transaldolase YP_003114138.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: dac:Daci_3104 LuxR family transcriptional regulator YP_003114139.1 KEGG: mab:MAB_1241c hypothetical protein YP_003114142.1 PFAM: coagulation factor 5/8 type domain protein; APHP domain protein; Fibronectin type III domain protein; SMART: coagulation factor 5/8 type domain protein; KEGG: sgr:SGR_6622 hypothetical protein YP_003114143.1 PFAM: esterase; KEGG: aba:acid345_2825 esterase YP_003114144.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO5384 TetR family transcriptional regulator YP_003114145.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: kra:Krad_0483 anti-sigma-factor antagonist YP_003114146.1 KEGG: fre:Franean1_0975 anti-sigma regulatory factor, serine/threonine protein kinase YP_003114147.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 4 domain protein; KEGG: sma:SAV_3013 RNA polymerase sigma factor, SigH YP_003114148.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: cmi:CMM_2158 serine/threonine protein kinase YP_003114150.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: sgr:SGR_3158 hypothetical protein YP_003114151.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: sgr:SGR_3156 hypothetical protein YP_003114152.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: sma:SAV_1060 ribonuclease BN YP_003114153.1 PFAM: diacylglycerol kinase; SMART: diacylglycerol kinase; KEGG: nca:Noca_0173 phosphoesterase, PA-phosphatase related YP_003114154.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: fal:FRAAL2367 glutamate synthase(ferredoxin) YP_003114155.1 PFAM: amino acid permease-associated region; KEGG: rrs:RoseRS_3857 amino acid permease- associated region YP_003114157.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: sen:SACE_4001 phosphopantetheinyl transferase YP_003114158.1 PFAM: metallophosphoesterase; KEGG: sco:SCO6672 hypothetical protein YP_003114159.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nca:Noca_4545 GCN5-related N- acetyltransferase YP_003114160.1 KEGG: sco:SCO6131 carboxypeptidase YP_003114161.1 PFAM: Kelch repeat-containing protein; Kelch repeat protein; SMART: Kelch repeat-containing protein; KEGG: saq:Sare_0368 peptidase S8 and S53 subtilisin kexin sedolisin YP_003114162.1 PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: sma:SAV_2501 endonuclease VIII and DNA N- glycosylase with an AP lyase activity YP_003114163.1 PFAM: protein of unknown function DUF1345; KEGG: art:Arth_4121 protein of unknown function DUF1345 YP_003114165.1 PFAM: phosphopantetheine-binding; KEGG: mxa:MXAN_1607 non-ribosomal peptide synthetase YP_003114166.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase YP_003114167.1 PFAM: cytochrome P450; KEGG: sma:SAV_838 cytochrome P450 YP_003114168.1 PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: rca:Rcas_0060 transcriptional activator domain-containing protein YP_003114169.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sma:SAV_849 methyltransferase YP_003114170.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: sma:SAV_848 non-ribosomal peptide synthetase YP_003114172.1 KEGG: stp:Strop_1021 cytochrome P450 YP_003114173.1 PFAM: thioesterase; KEGG: sma:SAV_840 thioesterase YP_003114174.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: sma:SAV_839 non-ribosomal peptide synthetase YP_003114175.1 KEGG: rca:Rcas_0396 hypothetical protein YP_003114176.1 PFAM: Lantibiotic dehydratase domain protein; KEGG: scl:sce2385 hypothetical protein YP_003114177.1 PFAM: phosphopantetheine-binding; KEGG: sen:SACE_1306 CDA peptide synthetase I YP_003114178.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: npu:Npun_CR072 amino acid adenylation domain- containing protein YP_003114179.1 PFAM: alpha/beta hydrolase fold protein; KEGG: mjl:Mjls_0026 hypothetical protein YP_003114180.1 PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: scl:sce8257 non-ribosomal peptide synthetase YP_003114181.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pap:PSPA7_2121 linear gramicidin synthetase subunit C YP_003114182.1 PFAM: protein of unknown function DUF1006; KEGG: sgr:SGR_6485 hypothetical protein YP_003114183.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: sco:SCO5932 arabinofuranosidase YP_003114184.1 PFAM: cytochrome P450; KEGG: nfa:nfa25810 cytochrome P450 monooxygenase YP_003114185.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; KEGG: scl:sce8262 non-ribosomal peptide synthetase YP_003114186.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; thioesterase; phosphopantetheine-binding; KEGG: ter:Tery_2968 amino acid adenylation domain- containing protein YP_003114187.1 TIGRFAM: chlorinating enzyme; PFAM: phytanoyl-CoA dioxygenase; KEGG: bte:BTH_II0564 BarB2 YP_003114188.1 PFAM: aspartyl/asparaginyl beta-hydroxylase; KEGG: sme:SMc03253 L-proline 3-hydroxylase protein YP_003114189.1 KEGG: rfe:RF_0036 pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein C YP_003114190.1 PFAM: fatty acid desaturase; KEGG: cti:RALTA_B1644 hypothetical protein YP_003114191.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pap:PSPA7_1565 PhzF family phenazine biosynthesis protein YP_003114192.1 PFAM: sodium/hydrogen exchanger; KEGG: Os05g0113300; hypothetical protein YP_003114193.1 PFAM: MbtH domain protein; KEGG: sen:SACE_4284 MbtH-like protein YP_003114194.1 PFAM: thioesterase; KEGG: fal:FRAAL2559 thioesterase YP_003114195.1 PFAM: thioesterase; KEGG: hau:Haur_1885 oleoyl-(acyl-carrier-protein) hydrolase YP_003114197.1 PFAM: major facilitator superfamily MFS_1; KEGG: ava:Ava_C0001 major facilitator transporter YP_003114198.1 PFAM: aminotransferase class I and II; KEGG: lfe:LAF_0303 aminotransferase YP_003114199.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: mab:MAB_4519c two-component LuxR family response regulator YP_003114200.1 KEGG: rec:RHECIAT_CH0002741 hypothetical protein YP_003114201.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: scl:sce8257 non-ribosomal peptide synthetase YP_003114202.1 PFAM: aminotransferase class I and II; KEGG: pst:PSPTO_3865 hypothetical protein YP_003114203.1 KEGG: rxy:Rxyl_1155 hypothetical protein YP_003114204.1 PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: jan:Jann_1884 hypothetical protein YP_003114205.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_4601 non-ribosomal peptide synthase YP_003114206.1 PFAM: peptidase S45 penicillin amidase; KEGG: tac:Ta1462 penicillin amidase precursor related protein YP_003114207.1 KEGG: fre:Franean1_4134 hypothetical protein YP_003114208.1 PFAM: protein of unknown function DUF1452; KEGG: nfa:nfa29980 hypothetical protein YP_003114209.1 KEGG: fre:Franean1_0975 anti-sigma regulatory factor, serine/threonine protein kinase YP_003114211.1 PFAM: carbohydrate binding family 6; glycoside hydrolase family 28; KEGG: sus:acid_4847 glycoside hydrolase family protein YP_003114212.1 PFAM: coagulation factor 5/8 type domain protein; Fibronectin type III domain protein; glucose sorbosone dehydrogenase; SMART: Fibronectin type III domain protein; KEGG: rha:RHA1_ro02468 glucose dehydrogenase YP_003114213.1 PFAM: PRC-barrel domain protein; KEGG: sco:SCO0919 hypothetical protein YP_003114215.1 PFAM: beta-lactamase; KEGG: kra:Krad_0368 serine-type D-Ala-D-Ala carboxypeptidase YP_003114216.1 TIGRFAM: glycosyltransferase, MGT family; PFAM: glycosyltransferase 28 domain; UDP- glucuronosyl/UDP-glucosyltransferase; KEGG: sma:SAV_7358 glycosyl transferase YP_003114217.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sma:SAV_7359 hydrolase YP_003114218.1 KEGG: rsa:RSal33209_2541 acyl carrier protein YP_003114219.1 PFAM: beta-ketoacyl synthase; acyl transferase; 4'- phosphopantetheinyl transferase; KEGG: sma:SAV_7361 modular polyketide synthase YP_003114220.1 PFAM: beta-ketoacyl synthase; acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; 2- nitropropane dioxygenase NPD; KEGG: sen:SACE_2342 modular polyketide synthase YP_003114221.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: fal:FRAAL1908 hypothetical protein YP_003114222.1 PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: sco:SCO0141 calcium-binding protein YP_003114223.1 PFAM: transcriptional regulator PadR family protein; KEGG: sma:SAV_6994 PadR-like family transcriptional regulator YP_003114224.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: sma:SAV_6713 siderophore-interacting protein YP_003114225.1 PFAM: transcription factor WhiB; KEGG: tfu:Tfu_1883 regulatory protein YP_003114226.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: nca:Noca_1141 guanine deaminase YP_003114227.1 KEGG: rca:Rcas_2588 hypothetical protein YP_003114228.1 PFAM: catalase domain protein; ThiJ/PfpI domain protein; KEGG: sen:SACE_3861 catalase HPII YP_003114229.1 KEGG: mab:MAB_2613 glucose/mannose:H+ symporter GlcP YP_003114230.1 KEGG: mpa:MAP3720 hypothetical protein YP_003114231.1 PFAM: stage II sporulation E family protein; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein; KEGG: sgr:SGR_6684 regulatory protein YP_003114232.1 PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sgr:SGR_6683 two-component system sensor kinase YP_003114233.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sgr:SGR_6682 two-component system response regulator YP_003114234.1 KEGG: sma:SAV_2402 hypothetical protein YP_003114235.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: sen:SACE_5978 mycothione/glutathione reductase YP_003114236.1 PFAM: diacylglycerol kinase; SMART: diacylglycerol kinase; KEGG: sma:SAV_5015 hypothetical protein YP_003114237.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: sco:SCO1047 integral membrane protein YP_003114238.1 KEGG: sgr:SGR_1140 LacI family transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003114239.1 PFAM: coagulation factor 5/8 type domain protein; Ig family protein; KEGG: sco:SCO0545 secreted protein YP_003114240.1 PFAM: glycoside hydrolase; coagulation factor 5/8 type domain protein; SMART: coagulation factor 5/8 type domain protein; KEGG: hypothetical protein; K05349 beta- glucosidase YP_003114241.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS111A/IS1328/IS1533; KEGG: mva:Mvan_4882 transposase IS116/IS110/IS902 family protein YP_003114242.1 KEGG: scl:sce1837 hypothetical protein YP_003114243.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; cytochrome C biogenesis protein transmembrane region; redoxin; KEGG: mpa:MAP3944c hypothetical protein YP_003114244.1 PFAM: alpha/beta hydrolase fold protein; KEGG: krh:KRH_11120 hypothetical protein YP_003114246.1 PFAM: AMP-dependent synthetase and ligase; thioesterase superfamily protein; KEGG: sgr:SGR_401 fatty acid CoA ligase YP_003114247.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_2275 transmembrane efflux protein YP_003114248.1 KEGG: fra:Francci3_3279 hypothetical protein YP_003114249.1 PFAM: AMP-dependent synthetase and ligase; KEGG: fra:Francci3_2046 AMP-dependent synthetase and ligase YP_003114251.1 PFAM: transglutaminase; KEGG: fra:Francci3_3280 transglutaminase-like YP_003114252.1 PFAM: phosphopantetheine-binding; KEGG: fre:Franean1_3968 phosphopantetheine-binding YP_003114253.1 PFAM: AMP-dependent synthetase and ligase; KEGG: fra:Francci3_3282 AMP-dependent synthetase and ligase YP_003114254.1 PFAM: AMP-dependent synthetase and ligase; KEGG: fra:Francci3_2050 AMP-dependent synthetase and ligase YP_003114255.1 PFAM: tryptophan 23-dioxygenase; KEGG: nca:Noca_1224 tryptophan 2,3-dioxygenase YP_003114256.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: rxy:Rxyl_2613 two component LuxR family transcriptional regulator YP_003114257.1 KEGG: saq:Sare_0540 hypothetical protein YP_003114258.1 TIGRFAM: kynureninase; PFAM: aminotransferase class V; KEGG: tfu:Tfu_0922 kynureninase YP_003114259.1 KEGG: similar to hCG2041257 YP_003114260.1 KEGG: sen:SACE_4320 integral membrane protein YP_003114261.1 PFAM: polymorphic membrane protein Chlamydia; KEGG: scl:sce3327 extracellular nuclease YP_003114262.1 PFAM: peptidase C1A papain; KEGG: xcv:XCV3013 cysteine protease precursor YP_003114263.1 PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: syn:slr1208 short-chain alcohol dehydrogenase family YP_003114264.1 KEGG: nfa:nfa45440 initiation factor eIF- 2B subunit alpha-like protein; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_003114265.1 KEGG: cth:Cthe_2766 hypothetical protein YP_003114266.1 TIGRFAM: hypothetical protein; PFAM: YD repeat-containing protein; KEGG: sma:SAV_21 rhs protein YP_003114267.1 PFAM: carboxymuconolactone decarboxylase; KEGG: mmi:MMAR_4001 dehydrogenase/decarboxylase protein YP_003114268.1 KEGG: sma:SAV_6027 integral membrane protein YP_003114269.1 KEGG: mxa:MXAN_2413 hypothetical protein YP_003114270.1 PFAM: PEP-utilizing protein; KEGG: sgr:SGR_596 hypothetical protein YP_003114271.1 KEGG: sgr:SGR_597 hypothetical protein YP_003114272.1 KEGG: nca:Noca_4768 McrBC 5-methylcytosine restriction system component-like protein YP_003114273.1 PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: ace:Acel_1679 protease-like YP_003114274.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: kra:Krad_3761 oxidoreductase molybdopterin binding YP_003114275.1 KEGG: mlo:msr4554 hypothetical protein YP_003114276.1 PFAM: cytochrome P450; KEGG: mmi:MMAR_0281 cytochrome P450 183B1 Cyp183B1 YP_003114277.1 KEGG: scl:sce6369 pentalenene synthase YP_003114278.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO6446 hypothetical protein YP_003114279.1 PFAM: cytochrome P450; KEGG: sma:SAV_6249 cytochrome P450 YP_003114280.1 KEGG: mmi:MMAR_2853 hypothetical protein YP_003114281.1 PFAM: protein of unknown function DUF1295; KEGG: hypothetical protein YP_003114282.1 KEGG: sgr:SGR_4275 hypothetical protein YP_003114284.1 PFAM: carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: sma:SAV_3337 acyl-CoA carboxylase, subunit alpha YP_003114285.1 PFAM: transcriptional regulator; response regulator receiver; SMART: response regulator receiver; KEGG: sgr:SGR_3474 two-component system response regulator YP_003114287.1 PFAM: carboxyl transferase; KEGG: sgr:SGR_3281 methylmalonyl-CoA decarboxylase subunit alpha YP_003114289.1 PFAM: monooxygenase FAD-binding; KEGG: tfu:Tfu_1216 hypothetical protein YP_003114290.1 KEGG: mmi:MMAR_1199 PE-PGRS family protein YP_003114291.1 PFAM: polyketide synthesis cyclase; KEGG: stp:Strop_2193 polyketide synthesis cyclase YP_003114292.1 PFAM: beta-ketoacyl synthase; KEGG: tfu:Tfu_1218 actinorhodin polyketide beta- ketoacyl synthase subunit alpha / 3-oxoacyl-ACP synthase I YP_003114293.1 PFAM: beta-ketoacyl synthase; KEGG: tfu:Tfu_1219 actinorhodin polyketide beta- ketoacyl synthase subunit beta / 3-oxoacyl-ACP synthase II YP_003114294.1 PFAM: phosphopantetheine-binding; KEGG: fra:Francci3_4147 phosphopantetheine-binding YP_003114295.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: tfu:Tfu_1221 ketoacyl reductase YP_003114296.1 PFAM: cyclase/dehydrase; KEGG: tfu:Tfu_1222 actinorhodin polyketide synthase bifunctional cyclase/dehydratase YP_003114297.1 PFAM: monooxygenase FAD-binding; KEGG: tfu:Tfu_1223 rifampin monooxygenase YP_003114298.1 PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: sen:SACE_4927 halogenase B YP_003114299.1 KEGG: rha:RHA1_ro03945 hypothetical protein YP_003114300.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bja:bll4976 transcriptional regulator YP_003114301.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO3199 transmembrane efflux protein YP_003114302.1 PFAM: cupin; KEGG: sen:SACE_4576 cupin 2, barrel YP_003114303.1 KEGG: fre:Franean1_5446 hemerythrin HHE cation binding domain-containing protein YP_003114304.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: sth:STH1890 oxidoreductase YP_003114305.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; Male sterility domain; KR domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; short-chain dehydrogenase/reductase SDR; KEGG: saq:Sare_0634 NmrA family protein YP_003114306.1 PFAM: protein of unknown function DUF1486; KEGG: gvi:glr0227 hypothetical protein YP_003114307.1 KEGG: fre:Franean1_0395 hypothetical protein YP_003114308.1 PFAM: sodium/hydrogen exchanger; KEGG: sgr:SGR_2594 integral membrane ion antiporter YP_003114309.1 PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: fal:FRAAL0334 activator protein YP_003114310.1 KEGG: pae:PA4610 hypothetical protein YP_003114311.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sen:SACE_4949 short-chain dehydrogenase/reductase SDR YP_003114312.1 PFAM: TetR family transcriptional regulator; KEGG: fal:FRAAL1635 TetR family transcriptional regulator YP_003114313.1 PFAM: TetR family transcriptional regulator; KEGG: mmi:MMAR_2297 transcriptional regulator YP_003114314.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sco:SCO0121 ABC transporter ATP-binding protein YP_003114315.1 KEGG: sco:SCO0120 integral membrane protein YP_003114317.1 PFAM: copper resistance protein CopC; copper resistance D domain protein; KEGG: sgr:SGR_3627 integral membrane protein YP_003114319.1 KEGG: GH12576 gene product from transcript GH12576- RA YP_003114320.1 PFAM: peptidase C60 sortase A and B; KEGG: ace:Acel_0348 peptidase C60, sortase A and B YP_003114321.1 KEGG: ace:Acel_0349 hypothetical protein YP_003114322.1 PFAM: blue (type 1) copper domain protein; KEGG: sco:SCO7674 secreted metal-binding protein YP_003114323.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO0242 hypothetical protein YP_003114324.1 KEGG: sco:SCO0243 hypothetical protein YP_003114326.1 PFAM: ricin B lectin; lipolytic protein G-D-S-L family; SMART: ricin B lectin; KEGG: sgr:SGR_385 hypothetical protein YP_003114327.1 PFAM: glycoside hydrolase family 59; ricin B lectin; SMART: ricin B lectin; KEGG: hypothetical protein; K01202 galactosylceramidase YP_003114328.1 PFAM: ricin B lectin; glycoside hydrolase family 76; SMART: ricin B lectin; KEGG: sma:SAV_627 glycosyl hydrolase YP_003114329.1 KEGG: gur:Gura_2346 lipopolysaccharide biosynthesis protein-like protein YP_003114330.1 PFAM: condensation domain protein; KEGG: sgr:SGR_5180 hypothetical protein YP_003114331.1 PFAM: glycoside hydrolase; KEGG: ace:Acel_2050 glycoside hydrolase family 3 protein YP_003114332.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: cmi:CMM_0295 LacI family transcriptional regulator YP_003114333.1 PFAM: extracellular solute-binding protein family 1; KEGG: cms:CMS_0868 solute-binding transporter YP_003114334.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cmi:CMM_0297 sugar ABC transporter permease YP_003114335.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cms:CMS_0870 intgral membrane transport protein YP_003114336.1 PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: cmi:CMM_0310 hypothetical protein YP_003114337.1 KEGG: ace:Acel_0179 PHB depolymerase family esterase; TIGRFAM: esterase, PHB depolymerase family; PFAM: cellulose-binding family II; Ig family protein; SMART: cellulose-binding family II YP_003114338.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: sde:Sde_2647 dehydrogenase YP_003114339.1 KEGG: fal:FRAAL3174 hypothetical protein YP_003114340.1 KEGG: sco:SCO5692 transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003114341.1 PFAM: extracellular solute-binding protein family 1; KEGG: cmi:CMM_0359 sugar ABC transporter substrate-binding protein YP_003114342.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cmi:CMM_0360 sugar ABC transporter permease YP_003114343.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cmi:CMM_0361 sugar ABC transporter permease YP_003114344.1 KEGG: tle:Tlet_1295 hypothetical protein YP_003114345.1 PFAM: glycoside hydrolase family 43; KEGG: sco:SCO0118 xylosidase/arabinosidase YP_003114346.1 KEGG: cmi:CMM_0251 LacI family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003114347.1 PFAM: glycoside hydrolase family 6; KEGG: ace:Acel_0135 cellulase YP_003114348.1 PFAM: cellulose-binding family II; glycoside hydrolase family 12; Fibronectin type III domain protein; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: ace:Acel_0619 cellulose-binding family II protein YP_003114349.1 PFAM: glycoside hydrolase family 48; Fibronectin type III domain protein; cellulose-binding family II; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: ace:Acel_0617 glycoside hydrolase family protein YP_003114350.1 KEGG: cbg:CbuG_0755 hypothetical protein YP_003114351.1 PFAM: DoxX family protein; KEGG: sgr:SGR_5159 hypothetical protein YP_003114353.1 KEGG: sma:SAV_4803 hypothetical protein YP_003114354.1 PFAM: methyltransferase type 11; KEGG: rba:RB3065 SAM-dependent methyltransferase YP_003114355.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: fre:Franean1_0072 LuxR family transcriptional regulator YP_003114356.1 KEGG: kra:Krad_0370 fibronectin type III domain- containing protein YP_003114357.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; ATPase AAA; KEGG: nfa:nfa53720 transcriptional regulator YP_003114358.1 PFAM: lipolytic protein G-D-S-L family; KEGG: reh:H16_B2513 lysophospholipase L1 or related esterase YP_003114359.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fre:Franean1_3989 MarR family transcriptional regulator YP_003114360.1 PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; KEGG: mva:Mvan_5002 regulatory protein, LuxR YP_003114361.1 PFAM: transcription factor WhiB; KEGG: mul:MUL_0895 WhiB-like regulatory protein, WhiB3 YP_003114362.1 TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: saq:Sare_3183 flavodoxin/nitric oxide synthase YP_003114363.1 KEGG: rlt:Rleg2_2482 alpha/beta hydrolase fold protein YP_003114364.1 PFAM: cupin; KEGG: ace:Acel_0692 cupin 2 domain-containing protein YP_003114365.1 PFAM: alpha/beta hydrolase fold protein; KEGG: pau:PA14_26090 hydrolase YP_003114366.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rha:RHA1_ro05809 3-oxoacyl-[acyl-carrier- protein] reductase YP_003114367.1 KEGG: nfa:nfa32200 hypothetical protein YP_003114368.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: kra:Krad_2729 regulatory protein LuxR YP_003114369.1 PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; KEGG: sco:SCO7143 transcriptional regulator YP_003114371.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_0340 lyase YP_003114372.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sen:SACE_0341 AraC family transcription regulator YP_003114373.1 PFAM: glycoside hydrolase family 28; KEGG: xac:XAC0661 endopolygalacturonase YP_003114374.1 PFAM: glycoside hydrolase family 28; KEGG: lxx:Lxx07750 endopolygalacturonase YP_003114375.1 KEGG: bmv:BMASAVP1_A0748 serine protease YP_003114376.1 KEGG: rha:RHA1_ro00277 hypothetical protein YP_003114377.1 KEGG: nca:Noca_4890 hypothetical protein YP_003114378.1 PFAM: regulatory protein LuxR; metal-dependent phosphohydrolase HD sub domain; SMART: regulatory protein LuxR; metal-dependent phosphohydrolase HD region; KEGG: mva:Mvan_2058 metal dependent phosphohydrolase YP_003114379.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_003114380.1 KEGG: nfa:nfa34440 hypothetical protein YP_003114381.1 PFAM: catalase domain protein; KEGG: sma:SAV_2026 catalase YP_003114382.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_4232 hypothetical protein YP_003114383.1 KEGG: reh:H16_A1672 hypothetical membrane spanning protein YP_003114384.1 KEGG: sen:SACE_2844 hypothetical protein YP_003114385.1 PFAM: histidine triad (HIT) protein; KEGG: lsp:Bsph_0403 protein hit YP_003114386.1 KEGG: sma:SAV_6228 hypothetical protein YP_003114388.1 KEGG: saq:Sare_4952 hypothetical protein YP_003114389.1 KEGG: rha:RHA1_ro04125 hypothetical protein YP_003114390.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_4904 transmembrane efflux protein YP_003114391.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_003114392.1 KEGG: fal:FRAAL4123 hypothetical protein YP_003114393.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpi:Rpic_1138 short-chain dehydrogenase/reductase SDR YP_003114394.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: saq:Sare_4956 monooxygenase, FAD-binding YP_003114396.1 PFAM: regulatory protein MerR; transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: sma:SAV_231 MerR family transcriptional regulator YP_003114397.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO2308 two-component system response regulator YP_003114398.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: tfu:Tfu_0289 two-component system sensor kinase YP_003114399.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy- lyase; PFAM: flavoprotein; KEGG: rce:RC1_1856 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_003114400.1 TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; KEGG: saq:Sare_1061 UbiD family decarboxylase YP_003114401.1 PFAM: MOSC domain containing protein; KEGG: sco:SCO4765 hypothetical protein YP_003114403.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO5956 regulatory protein YP_003114404.1 PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold protein; KEGG: pfo:Pfl01_2254 epoxide hydrolase-like YP_003114405.1 PFAM: von Willebrand factor type D protein; KEGG: Muc19; mucin 19 YP_003114406.1 KEGG: art:Arth_0033 hypothetical protein YP_003114407.1 KEGG: sma:SAV_7098 hypothetical protein YP_003114408.1 PFAM: cyclase/dehydrase; KEGG: kra:Krad_0825 cyclase/dehydrase YP_003114409.1 PFAM: GntR family transcriptional regulator; aminotransferase class I and II; SMART: GntR family transcriptional regulator; KEGG: sen:SACE_6928 GntR family transcriptional regulator YP_003114410.1 PFAM: chorismate binding-like; KEGG: mka:MK0437 anthranilate/para-aminobenzoate synthase component I YP_003114411.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: cau:Caur_1730 glutamine amidotransferase YP_003114412.1 KEGG: xfa:XF1916 coenzyme F390 synthetase YP_003114413.1 KEGG: stp:Strop_1040 hypothetical protein YP_003114414.1 PFAM: amidohydrolase; amidohydrolase; KEGG: rha:RHA1_ro04297 dipeptidase YP_003114415.1 PFAM: B3/4 domain protein; KEGG: rec:RHECIAT_CH0003108 hypothetical protein YP_003114416.1 PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: bvi:Bcep1808_4931 ATP-dependent carboxylate- amine ligase domain-containing protein YP_003114417.1 PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_4006 major facilitator superfamily permease YP_003114418.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_003114419.1 PFAM: NADPH-dependent FMN reductase; KEGG: lxx:Lxx06840 iron-sulfur flavoprotein YP_003114420.1 PFAM: cupin; KEGG: sfu:Sfum_1397 cupin 2, conserved barrel domain protein YP_003114421.1 PFAM: chorismate mutase; KEGG: art:Arth_2321 chorismate mutase YP_003114422.1 PFAM: carboxylyase-related protein; KEGG: kpe:KPK_3325 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein YP_003114423.1 PFAM: GntR family transcriptional regulator; aminotransferase class I and II; SMART: GntR family transcriptional regulator; KEGG: ava:Ava_1933 GntR family transcriptional regulator YP_003114424.1 PFAM: GntR family transcriptional regulator; aminotransferase class I and II; SMART: GntR family transcriptional regulator; KEGG: sgr:SGR_6261 transcriptional regulator YP_003114425.1 SMART: helix-turn-helix domain protein; KEGG: aau:AAur_2039 transcriptional regulator YP_003114427.1 PFAM: aldo/keto reductase; KEGG: bid:Bind_2612 aldo/keto reductase YP_003114428.1 KEGG: mgi:Mflv_0993 hypothetical protein YP_003114429.1 PFAM: glycosyl transferase family 2; KEGG: sen:SACE_6097 glycosyl transferase YP_003114430.1 PFAM: coagulation factor 5/8 type domain protein; Ig family protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: saq:Sare_4887 coagulation factor 5/8 type domain-containing protein YP_003114431.1 PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: sgr:SGR_4408 AfsR-like transcriptional regulator YP_003114432.1 PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4409 hypothetical protein YP_003114433.1 PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4410 hypothetical protein YP_003114434.1 KEGG: sgr:SGR_4411 hypothetical protein YP_003114435.1 PFAM: Lantibiotic dehydratase domain protein; KEGG: sgr:SGR_4412 hypothetical protein YP_003114436.1 KEGG: stp:Strop_2432 hypothetical protein YP_003114437.1 PFAM: ABC transporter; peptidase M50; SMART: AAA ATPase; KEGG: sgr:SGR_4415 ABC transporter ATP- binding protein YP_003114438.1 PFAM: ABC transporter; KEGG: sgr:SGR_4416 ABC transporter permease YP_003114439.1 PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4417 hypothetical protein YP_003114440.1 KEGG: sgr:SGR_4418 lantibiotic precursor YP_003114441.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: saq:Sare_2568 amidohydrolase YP_003114442.1 KEGG: fre:Franean1_3837 transposase IS4 family protein YP_003114443.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sen:SACE_4257 alpha-glucosidase YP_003114444.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO7011 membrane transporter YP_003114445.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO7012 binding protein dependent transport protein YP_003114446.1 PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO7013 sugar-binding lipoprotein YP_003114447.1 KEGG: sgr:SGR_1693 LacI family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003114448.1 KEGG: sgr:SGR_1693 LacI family transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003114449.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: sma:SAV_1723 mycodextranase YP_003114450.1 PFAM: carbohydrate binding family 6; KEGG: cpy:Cphy_1873 carbohydrate-binding family 6 protein YP_003114451.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sen:SACE_4257 alpha-glucosidase YP_003114452.1 PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein YP_003114453.1 KEGG: sgr:SGR_848 hypothetical protein YP_003114454.1 TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: glycoside hydrolase 15-related; trehalose- phosphatase; KEGG: sen:SACE_0461 trehalose-phosphatase/glycoside hydrolase YP_003114455.1 KEGG: cac:CAC2514 beta galactosidase; PFAM: glycoside hydrolase family 35; glycosyl hydrolase family 98 carbohydrate binding module; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 42 domain protein; SMART: glycosyl hydrolase family 98 carbohydrate binding module YP_003114457.1 PFAM: glycoside hydrolase family 30; coagulation factor 5/8 type domain protein; KEGG: sgr:SGR_6911 glycosyl hydrolase YP_003114458.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sco:SCO1376 LacI family transcriptional regulator YP_003114459.1 KEGG: sgr:SGR_6911 glycosyl hydrolase; PFAM: glycoside hydrolase family 30; ricin B lectin; SMART: ricin B lectin YP_003114460.1 PFAM: carbohydrate-binding family V/XII; SMART: carbohydrate-binding family V/XII; KEGG: mca:MCA2747 cellulose-binding domain- containing protein YP_003114461.1 PFAM: cellulose-binding family II; glycoside hydrolase family 5; SMART: cellulose-binding family II; KEGG: sma:SAV_1854 endo-1,4-beta-glucanase YP_003114462.1 PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO6231 sugar transporter sugar- binding lipoprotein YP_003114463.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO6230 sugar transporter permease YP_003114464.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO6229 sugar transporter permease YP_003114465.1 KEGG: tfu:Tfu_0915 beta-mannosidase YP_003114466.1 KEGG: saq:Sare_1119 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003114467.1 PFAM: glycosyl transferase family 20; KEGG: sen:SACE_0462 trehalose-6-phosphate synthase YP_003114468.1 PFAM: amino acid permease-associated region; KEGG: cmi:CMM_0123 amino acid permease APC family YP_003114469.1 TIGRFAM: urea carboxylase-associated protein 2; KEGG: cmi:CMM_0122 hypothetical protein YP_003114470.1 TIGRFAM: urea carboxylase-associated protein 1; KEGG: cmi:CMM_0121 hypothetical protein YP_003114471.1 KEGG: cmi:CMM_0120 UreA amidolyase; TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: allophanate hydrolase subunit 2; carbamoyl- phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; allophanate hydrolase subunit 1; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; SMART: allophanate hydrolase subunit 2; allophanate hydrolase subunit 1 YP_003114472.1 catalyzes the hydrolysis of allophanate YP_003114473.1 PFAM: TetR family transcriptional regulator; KEGG: cmi:CMM_0119 TetR family transcriptional regulator YP_003114474.1 PFAM: Lanthionine synthetase C family protein; KEGG: sgr:SGR_4809 lantibiotic modifying enzyme YP_003114476.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sgr:SGR_4807 LuxR family transcriptional regulator YP_003114477.1 KEGG: hau:Haur_4021 hypothetical protein YP_003114478.1 PFAM: hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: hau:Haur_4022 hypothetical protein YP_003114479.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO7552 TetR family transcriptional regulator YP_003114480.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sen:SACE_4136 oxidoreductase YP_003114481.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: sco:SCO0969 reductase YP_003114482.1 KEGG: mpt:Mpe_A3464 hypothetical protein YP_003114483.1 PFAM: alpha-L-rhamnosidase; KEGG: bch:Bcen2424_0168 alpha-L-rhamnosidase YP_003114484.1 PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ote:Oter_3063 alpha-L-rhamnosidase YP_003114485.1 PFAM: ricin B lectin; lipolytic protein G-D-S-L family; SMART: ricin B lectin; KEGG: gvi:gll2764 unknown protein YP_003114487.1 PFAM: helix-turn-helix domain protein; TPR repeat- containing protein; hypothetical protein; SMART: helix-turn-helix domain protein; hypothetical protein; KEGG: sen:SACE_1897 regulatory protein YP_003114488.1 KEGG: ava:Ava_1338 hypothetical protein YP_003114490.1 KEGG: cma:Cmaq_1265 hypothetical protein YP_003114491.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO2165 two component system response regulator YP_003114492.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sgr:SGR_5343 two-component system sensor kinase YP_003114493.1 PFAM: MMPL domain protein; KEGG: sma:SAV_3408 integral membrane export protein YP_003114494.1 PFAM: methyltransferase type 11; methyltransferase small; methyltransferase type 12; RNA methylase; KEGG: mpa:MAP4097 hypothetical protein YP_003114495.1 PFAM: transcriptional activator domain; TPR repeat- containing protein; NB-ARC domain protein; transcriptional regulator domain protein; SMART: hypothetical protein; KEGG: sco:SCO4426 regulatory protein YP_003114497.1 KEGG: saq:Sare_4185 hypothetical protein YP_003114498.1 KEGG: saq:Sare_4187 hypothetical protein YP_003114499.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: saq:Sare_4186 ABC transporter YP_003114500.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: saq:Sare_4184 hypothetical protein YP_003114501.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_4232 hypothetical protein YP_003114502.1 PFAM: protein of unknown function DUF201; ATP- dependent carboxylate-amine ligase domain protein ATP- grasp; phosphoribosylglycinamide synthetase; KEGG: fal:FRAAL2536 hypothetical protein YP_003114503.1 PFAM: carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; RimK domain protein ATP-grasp; biotin/lipoyl attachment domain- containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: cvi:CV_0018 biotin carboxylase YP_003114504.1 PFAM: carboxyl transferase; KEGG: cvi:CV_0019 propionyl CoA carboxylase subunit beta YP_003114505.1 PFAM: aminotransferase class I and II; KEGG: cvi:CV_0021 hypothetical protein YP_003114506.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: fre:Franean1_2189 3-hydroxybutyryl-CoA dehydrogenase YP_003114507.1 PFAM: Luciferase-like monooxygenase; KEGG: sma:SAV_6696 monooxygenase YP_003114508.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: sma:SAV_7210 ABC transporter substrate- binding protein YP_003114509.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_7209 ABC transporter ATP-binding protein YP_003114510.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_7208 ABC transporter permease YP_003114511.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: fre:Franean1_1175 BadM/Rrf2 family transcriptional regulator YP_003114512.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: sgr:SGR_5753 ABC transporter substrate-binding protein YP_003114514.1 KEGG: ace:Acel_0676 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003114515.1 PFAM: glycosyl transferase group 1; KEGG: sen:SACE_6200 transferase YP_003114516.1 KEGG: gvi:gll1168 hypothetical protein YP_003114517.1 PFAM: ROK family protein; KEGG: sma:SAV_5420 transcriptional regulator YP_003114518.1 PFAM: NADPH-dependent FMN reductase; KEGG: rha:RHA1_ro01755 FMN reductase YP_003114519.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: scl:sce0101 taurine dioxygenase YP_003114520.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: fal:FRAAL6186 oxidoreductase YP_003114521.1 PFAM: Luciferase-like monooxygenase; KEGG: mpa:MAP1082c hypothetical protein YP_003114522.1 KEGG: aau:AAur_1441 ABC-type sulfonate transport system YP_003114523.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_1440 ABC-type nitrate/sulfonate/bicarbonate transporter, permease YP_003114524.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: aau:AAur_1439 sulfonate ABC transporter ATP-binding protein YP_003114525.1 KEGG: rha:RHA1_ro04957 nitrilotriacetate monooxygenase YP_003114526.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: rha:RHA1_ro04958 bifunctional ABC multidrug transporter YP_003114527.1 PFAM: aldo/keto reductase; KEGG: aau:AAur_1437 aldo/keto reductase family oxidoreductase YP_003114528.1 PFAM: HEAT domain containing protein; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sma:SAV_4852 oxidoreductase/heat repeat-containing protein YP_003114529.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_4853 ABC transporter ATP-binding protein YP_003114530.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_4854 ABC transporter permease YP_003114531.1 KEGG: rha:RHA1_ro06848 ABC transporter substrate- binding component YP_003114532.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mav:MAV_3401 hypothetical protein YP_003114534.1 PFAM: UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sma:SAV_4857 GntR family transcriptional regulator YP_003114535.1 KEGG: det:DET1003 hypothetical protein YP_003114536.1 PFAM: Luciferase-like monooxygenase; KEGG: fal:FRAAL4846 LuxAB-like oxygenase YP_003114537.1 PFAM: Luciferase-like monooxygenase; KEGG: fal:FRAAL4266 luciferase family oxidoreductase YP_003114538.1 KEGG: sma:SAV_7213 FMNH2-utilizing oxygenase YP_003114539.1 KEGG: sma:SAV_7212 FMNH2-utilizing oxygenase YP_003114540.1 PFAM: FR47 domain protein; GCN5-related N- acetyltransferase; KEGG: fra:Francci3_1546 GCN5-related N- acetyltransferase YP_003114541.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sen:SACE_3966 amino acid ABC transporter permease YP_003114542.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sen:SACE_3965 ABC transporter ATP- binding protein YP_003114544.1 KEGG: nfa:nfa54470 hypothetical protein YP_003114545.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: sma:SAV_1076 hypothetical protein YP_003114546.1 PFAM: ricin B lectin; glycoside hydrolase family 5; KEGG: scl:sce4592 alpha-L-arabinofuranosidase precursor YP_003114547.1 PFAM: protein of unknown function DUF624; KEGG: ret:RHE_CH02708 hypothetical protein YP_003114548.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: efa:EF2232 ABC transporter permease YP_003114549.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: efa:EF2233 ABC transporter permease YP_003114550.1 PFAM: extracellular solute-binding protein family 1; KEGG: efa:EF2234 sugar ABC transporter sugar- binding protein YP_003114551.1 KEGG: aau:AAur_3929 hypothetical protein YP_003114552.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sgr:SGR_2768 2-hydroxyacid family dehydrogenase YP_003114553.1 PFAM: DeoR family transcriptional regulator; Helix-turn-helix type 11 domain protein; periplasmic binding protein/LacI transcriptional regulator; SMART: DeoR family transcriptional regulator; KEGG: sgr:SGR_2764 DeoR family transcriptional regulator YP_003114554.1 KEGG: rlt:Rleg2_1765 hypothetical protein YP_003114555.1 PFAM: TetR family transcriptional regulator; KEGG: fra:Francci3_2758 TetR family transcriptional regulator YP_003114556.1 PFAM: transcriptional regulator PadR family protein; KEGG: sgr:SGR_428 PadR family transcriptional regulator YP_003114557.1 KEGG: mva:Mvan_0085 hypothetical protein YP_003114558.1 PFAM: acetyl xylan esterase; KEGG: sma:SAV_1457 acetyl xylan esterase YP_003114560.1 PFAM: glycoside hydrolase; KEGG: ace:Acel_2050 glycoside hydrolase family 3 protein YP_003114561.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_1456 multiple sugar ABC transport permease protein YP_003114562.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_1455 ABC transporter permease YP_003114563.1 PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_1454 ABC transporter substrate- binding protein YP_003114564.1 PFAM: glycoside hydrolase family 39; KEGG: sma:SAV_1453 xylan 1,4-beta-xylosidase YP_003114565.1 KEGG: sma:SAV_1452 hypothetical protein YP_003114566.1 PFAM: glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; KEGG: sma:SAV_1450 alpha-glucuronidase YP_003114567.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mmi:MMAR_1738 oxidoreductase YP_003114568.1 PFAM: MOSC domain containing protein; oxidoreductase FAD-binding domain protein; ferredoxin; FAD- binding 9 siderophore-interacting domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: sus:acid_3476 MOSC domain-containing protein YP_003114569.1 PFAM: hypothetical protein; SMART: WD-40 repeat protein; KEGG: fal:FRAAL1754 hypothetical protein YP_003114570.1 PFAM: hypothetical protein; peptidase C14 caspase catalytic subunit p20; SMART: hypothetical protein; KEGG: fre:Franean1_1125 WD-40 repeat-containing serine/threonin protein kinase YP_003114572.1 SMART: Parallel beta-helix repeat; KEGG: fre:Franean1_3805 PKD domain-containing protein YP_003114573.1 PFAM: transglutaminase; SMART: transglutaminase; KEGG: fre:Franean1_3804 transglutaminase domain- containing protein YP_003114574.1 PFAM: protein of unknown function DUF58; KEGG: fre:Franean1_3803 hypothetical protein YP_003114575.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; KEGG: sen:SACE_5869 methanol dehydrogenase regulatory protein YP_003114576.1 KEGG: fre:Franean1_2783 hypothetical protein YP_003114577.1 KEGG: fra:Francci3_1105 hypothetical protein YP_003114578.1 PFAM: protein of unknown function DUF1254; protein of unknown function DUF1214; KEGG: bbr:BB2448 hypothetical protein YP_003114579.1 KEGG: mgi:Mflv_0400 hypothetical protein YP_003114580.1 PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; KEGG: mxa:MXAN_6505 sulfate permease YP_003114582.1 PFAM: NHL repeat containing protein; KEGG: sus:acid_5924 NHL repeat-containing protein YP_003114583.1 PFAM: phosphoesterase; KEGG: mab:MAB_0555 non-hemolytic phospholipase C YP_003114584.1 PFAM: glycoside hydrolase; coagulation factor 5/8 type domain protein; KEGG: bam:Bamb_2459 beta-glucosidase YP_003114586.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; PDZ/DHR/GLGF domain protein; KEGG: hau:Haur_0270 MarR family transcriptional regulator YP_003114587.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: amr:AM1_6141 3-oxoacyl-(acyl carrier protein) reductase YP_003114588.1 PFAM: antibiotic biosynthesis monooxygenase; globin; KEGG: fal:FRAAL2473 hypothetical protein YP_003114589.1 PFAM: GTP cyclohydrolase II; KEGG: sma:SAV_4121 GTP cyclohydrolase II YP_003114593.1 KEGG: mkm:Mkms_4930 hypothetical protein YP_003114595.1 PFAM: transposase IS4 family protein; KEGG: cgt:cgR_2585 hypothetical protein YP_003114596.1 PFAM: Recombinase; KEGG: saq:Sare_3094 recombinase YP_003114600.1 KEGG: rpc:RPC_2758 hypothetical protein YP_003114602.1 PFAM: hypothetical protein; KEGG: fre:Franean1_6784 TPR repeat-containing protein YP_003114603.1 KEGG: sbm:Shew185_1688 hypothetical protein YP_003114604.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: mtf:TBFG_13460 transposase YP_003114605.1 PFAM: Integrase catalytic region; KEGG: mtf:TBFG_13460 transposase YP_003114608.1 KEGG: fal:FRAAL0367 hypothetical protein YP_003114609.1 KEGG: sco:SCO2523 hypothetical protein YP_003114610.1 KEGG: npu:Npun_BR095 metallophosphoesterase YP_003114611.1 SMART: ATPase AAA; KEGG: sgr:SGR_678 hypothetical protein YP_003114612.1 KEGG: mar:MAE_28640 hypothetical protein YP_003114613.1 KEGG: mar:MAE_28650 hypothetical protein YP_003114614.1 KEGG: fra:Francci3_4112 IS630 family transposase YP_003114615.1 KEGG: fra:Francci3_4113 IS630 family transposase YP_003114616.1 KEGG: sco:SCO0738 secreted protein YP_003114617.1 PFAM: Recombinase; KEGG: fre:Franean1_2732 recombinase YP_003114618.1 KEGG: rpc:RPC_2758 hypothetical protein YP_003114619.1 PFAM: KAP P-loop domain protein; KEGG: cgb:cg1945 hypothetical protein YP_003114620.1 KEGG: ret:RHE_CH02564 hypothetical protein YP_003114622.1 PFAM: ABC transporter; KEGG: fre:Franean1_6250 ABC transporter YP_003114623.1 PFAM: monooxygenase FAD-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: bcm:Bcenmc03_7059 monooxygenase FAD-binding YP_003114624.1 PFAM: TetR family transcriptional regulator; KEGG: sma:SAV_2263 TetR family transcriptional regulator YP_003114625.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO4977 TetR family transcriptional regulator YP_003114626.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_3289 integral membrane efflux protein YP_003114627.1 PFAM: iron permease FTR1; KEGG: fal:FRAAL1404 transmembrane protein YP_003114628.1 KEGG: mpa:MAP1761c hypothetical protein YP_003114629.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: fal:FRAAL1401 signal peptide YP_003114632.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: sgr:SGR_3548 CRISPR-associated Cas2 family protein YP_003114633.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: sgr:SGR_3547 CRISPR-associated Cas1 family protein YP_003114634.1 TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: sgr:SGR_3546 CRISPR-associated CSE3 family protein YP_003114635.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: tfu:Tfu_1597 CRISPR-associated Cas5e family protein YP_003114636.1 TIGRFAM: CRISPR-associated protein, Cse4 family; KEGG: tfu:Tfu_1598 CRISPR-associated CSE4 family protein YP_003114637.1 TIGRFAM: CRISPR-associated protein, Cse2 family; KEGG: tfu:Tfu_1599 CRISPR-associated CSE2 family protein YP_003114638.1 KEGG: sgr:SGR_3542 CRISPR-associated helicase Cas3 family protein protein; TIGRFAM: CRISPR-associated protein, Cse1 family; CRISPR-associated helicase Cas3; PFAM: DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_003114639.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fre:Franean1_4523 ABC transporter YP_003114640.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: bxe:Bxe_B1056 hypothetical protein YP_003114641.1 PFAM: HpcH/HpaI aldolase; KEGG: pde:Pden_3272 HpcH/HpaI aldolase YP_003114642.1 PFAM: amidohydrolase; KEGG: mrd:Mrad2831_5915 amidohydrolase YP_003114643.1 PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rxy:Rxyl_2271 thiamine pyrophosphate enzyme- like TPP binding region YP_003114644.1 KEGG: reu:Reut_A1475 hypothetical protein YP_003114645.1 KEGG: bja:blr3843 hypothetical protein YP_003114646.1 KEGG: pde:Pden_3273 hypothetical protein YP_003114647.1 PFAM: amidohydrolase; KEGG: pde:Pden_3277 amidohydrolase YP_003114648.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: rxy:Rxyl_0208 transcriptional regulator, GntR family YP_003114649.1 KEGG: aau:AAur_2553 sulfonate ABC transporter solute-binding protein YP_003114650.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: fre:Franean1_4522 binding-protein-dependent transporters inner membrane component YP_003114651.1 KEGG: sus:acid_6335 hypothetical protein YP_003114652.1 PFAM: hypothetical protein; KEGG: hypothetical protein YP_003114653.1 KEGG: mgi:Mflv_5389 hypothetical protein YP_003114654.1 SMART: helix-turn-helix domain protein YP_003114655.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: fra:Francci3_2035 NAD-dependent epimerase/dehydratase YP_003114656.1 KEGG: nfa:nfa54280 hypothetical protein YP_003114660.1 PFAM: Lantibiotic dehydratase domain protein; KEGG: sco:SCO6930 hypothetical protein YP_003114661.1 PFAM: Lanthionine synthetase C family protein; KEGG: sco:SCO6929 hypothetical protein YP_003114662.1 PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase; KEGG: sco:SCO6928 O-methyltransferase YP_003114663.1 KEGG: fra:Francci3_2030 hypothetical protein YP_003114664.1 KEGG: krh:KRH_07900 hypothetical protein YP_003114665.1 PFAM: protein of unknown function DUF397; KEGG: fra:Francci3_1781 hypothetical protein YP_003114666.1 PFAM: hypothetical protein; SMART: hypothetical protein; KEGG: fre:Franean1_3441 TPR repeat-containing protein YP_003114668.1 PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: sgr:SGR_2189 regulator protein YP_003114669.1 KEGG: sgr:SGR_2191 hypothetical protein YP_003114670.1 KEGG: yen:YE3020 lyase YP_003114671.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ace:Acel_0195 LuxR family transcriptional regulator YP_003114674.1 PFAM: ABC transporter; KEGG: met:M446_3153 ABC-2 type transporter YP_003114675.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gvi:glr3472 probable ABC transporter ATP- binding protein YP_003114676.1 PFAM: TetR family transcriptional regulator; Tetracyclin repressor domain protein; KEGG: nfa:nfa27980 transcriptional regulator YP_003114677.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sco:SCO3785 integral membrane protein YP_003114678.1 KEGG: sma:SAV_62 transmembrane transporter YP_003114679.1 SMART: helix-turn-helix domain protein; KEGG: sen:SACE_0542 XRE family transcriptional regulator YP_003114680.1 KEGG: rru:Rru_A3391 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003114682.1 KEGG: sgr:SGR_7127t transposase YP_003114683.1 KEGG: stp:Strop_1237 hypothetical protein YP_003114684.1 PFAM: Camphor resistance CrcB protein; KEGG: sma:SAV_1942 camphor resistance protein CrcB YP_003114685.1 PFAM: protein of unknown function DUF190; KEGG: fra:Francci3_2323 hypothetical protein YP_003114686.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: sma:SAV_7580 camphor resistance protein CrcB YP_003114687.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: sma:SAV_1169 hypothetical protein YP_003114688.1 KEGG: dol:Dole_0246 hypothetical protein YP_003114689.1 PFAM: helicase; SMART: helicase domain protein; KEGG: fre:Franean1_6770 helicase domain-containing protein YP_003114690.1 PFAM: copper resistance protein CopC; copper resistance D domain protein; KEGG: sgr:SGR_3627 integral membrane protein YP_003114691.1 KEGG: sma:SAV_2334 hypothetical protein YP_003114692.1 KEGG: sco:SCO7675 integral membrane protein YP_003114693.1 PFAM: blue (type 1) copper domain protein; KEGG: sco:SCO7674 secreted metal-binding protein YP_003114695.1 PFAM: peptidase C60 sortase A and B; KEGG: ace:Acel_0348 peptidase C60, sortase A and B YP_003114696.1 KEGG: ace:Acel_0349 hypothetical protein YP_003114697.1 KEGG: sgr:SGR_5883 hypothetical protein YP_003114698.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sgr:SGR_5884 RNA polymerase ECF-subfamily sigma factor YP_003114699.1 KEGG: cyb:CYB_1889 Tat pathway signal sequence domain-containing protein YP_003114700.1 KEGG: GK24124 gene product from transcript GK24124- RA YP_003114701.1 PFAM: blue (type 1) copper domain protein; KEGG: sco:SCO7674 secreted metal-binding protein YP_003114702.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fre:Franean1_4207 RNA polymerase sigma factor SigK YP_003114703.1 KEGG: sgr:SGR_649 hypothetical protein YP_003114704.1 SMART: hypothetical protein; KEGG: fre:Franean1_6801 hypothetical protein YP_003114705.1 PFAM: high-affinity nickel-transporter; KEGG: sgr:SGR_651 hypothetical protein YP_003114707.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: sma:SAV_921 anti-sigma factor antagonist YP_003114708.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: art:Arth_2359 cyclopropane-fatty-acyl- phospholipid synthase YP_003114709.1 KEGG: cmi:CMM_2306 hypothetical protein YP_003114710.1 KEGG: sma:SAV_4165 hypothetical protein YP_003114711.1 KEGG: cau:Caur_1474 WecB/TagA/CpsF family glycosyl transferase YP_003114712.1 KEGG: sco:SCO4460 hypothetical protein YP_003114713.1 PFAM: TrmB family transcriptional regulator; KEGG: stp:Strop_2947 hypothetical protein YP_003114714.1 PFAM: TetR family transcriptional regulator; KEGG: saq:Sare_2134 TetR family transcriptional regulator YP_003114715.1 KEGG: bbr:BB0389 4,5-dihydroxyphthalate decarboxylase YP_003114718.1 KEGG: nca:Noca_2756 integrase catalytic subunit YP_003114719.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: rha:RHA1_ro10191 RNA-directed DNA polymerase YP_003114720.1 KEGG: sgr:SGR_3443 hypothetical protein YP_003114721.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: nca:Noca_2757 IstB ATP binding domain- containing protein YP_003114722.1 PFAM: aminoglycoside phosphotransferase; KEGG: stp:Strop_0508 hypothetical protein YP_003114723.1 KEGG: fra:Francci3_1045 hypothetical protein YP_003114724.1 SMART: hypothetical protein; KEGG: ter:Tery_2809 tetratricopeptide TPR_2 YP_003114725.1 KEGG: cur:cur_0132 hypothetical protein YP_003114726.1 PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_1748 GCN5-related N- acetyltransferase YP_003114727.1 PFAM: amino acid permease-associated region; KEGG: saq:Sare_1731 amino acid permease-associated region YP_003114728.1 KEGG: saq:Sare_1730 hypothetical protein YP_003114732.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: sen:SACE_1537 UDP-glucose 4-epimerase YP_003114733.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_5660 XRE family transcriptional regulator YP_003114735.1 KEGG: fre:Franean1_1698 peptidase A24A prepilin type IV YP_003114736.1 KEGG: fre:Franean1_2798 hypothetical protein YP_003114737.1 KEGG: fre:Franean1_2797 hypothetical protein YP_003114738.1 PFAM: SAF domain protein; KEGG: fre:Franean1_2596 SAF domain-containing protein YP_003114739.1 KEGG: fra:Francci3_1737 hypothetical protein YP_003114740.1 PFAM: type II secretion system protein E; KEGG: fra:Francci3_1736 type II secretion system protein E YP_003114741.1 PFAM: type II secretion system protein; KEGG: fre:Franean1_2593 integral membrane protein YP_003114742.1 PFAM: type II secretion system protein; KEGG: fra:Francci3_1734 type II secretion system protein YP_003114745.1 KEGG: fra:Francci3_1733 hypothetical protein YP_003114746.1 PFAM: TadE family protein; KEGG: fra:Francci3_1732 TadE-like YP_003114747.1 KEGG: fra:Francci3_1731 hypothetical protein YP_003114748.1 PFAM: peptidoglycan-binding LysM; KEGG: fre:Franean1_2587 response regulator receiver/SARP domain-containing protein YP_003114751.1 KEGG: lmo:lmo1799 peptidoglycan binding protein YP_003114754.1 KEGG: fal:FRAAL2217 hypothetical protein YP_003114756.1 SMART: DEAD-like helicases; KEGG: seh:SeHA_C1592 helicase C2 YP_003114757.1 KEGG: bbt:BBta_3311 XRE family transcriptional regulator YP_003114760.1 KEGG: met:M446_2611 translation initiation factor IF-2 YP_003114762.1 KEGG: fre:Franean1_2775 hypothetical protein YP_003114764.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: sma:SAV_5536 type II restriction-modification system DNA cytosine-specific methylase YP_003114774.1 KEGG: sal:Sala_0274 hypothetical protein YP_003114780.1 PFAM: von Willebrand factor A; KEGG: sco:SCO6864 hypothetical protein YP_003114781.1 PFAM: ATPase associated with various cellular activities AAA_5; ATPase AAA; KEGG: sco:SCO6865 regulatory protein YP_003114783.1 PFAM: NLP/P60 protein; lytic transglycosylase catalytic; KEGG: fra:Francci3_1696 NLP/P60 YP_003114784.1 KEGG: fre:Franean1_2550 hypothetical protein YP_003114785.1 KEGG: fre:Franean1_2549 hypothetical protein YP_003114786.1 KEGG: fre:Franean1_2548 type IV secretory pathway VirB4 protein-like protein YP_003114787.1 KEGG: fre:Franean1_2547 hypothetical protein YP_003114789.1 KEGG: fre:Franean1_2546 hypothetical protein YP_003114790.1 KEGG: fre:Franean1_2545 hypothetical protein YP_003114791.1 KEGG: fre:Franean1_2544 hypothetical protein YP_003114792.1 KEGG: sen:SACE_2308 hypothetical protein YP_003114793.1 PFAM: RNA methylase; KEGG: sen:SACE_2307 hypothetical protein YP_003114795.1 KEGG: sma:SAV_5018 hypothetical protein YP_003114796.1 KEGG: GK12364 YP_003114799.1 KEGG: sco:SCO6845 hypothetical protein YP_003114802.1 PFAM: Recombinase; Resolvase domain; KEGG: fre:Franean1_2537 recombinase YP_003114803.1 PFAM: stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; KEGG: sma:SAV_786 magnesium or manganese-dependent protein phosphatase YP_003114804.1 PFAM: glycoside hydrolase; ricin B lectin; Ig family protein; SMART: ricin B lectin; KEGG: hypothetical protein; K05349 beta- glucosidase YP_003114805.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sgr:SGR_1442 LysR family transcriptional regulator YP_003114806.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: tth:TTC0899 hypothetical protein YP_003114807.1 KEGG: kra:Krad_4140 hypothetical protein YP_003114808.1 KEGG: ccr:CC_3386 hypothetical protein YP_003114809.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_7161 RNA polymerase ECF sigma factor YP_003114811.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: amr:AM1_1657 hypothetical protein YP_003114812.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: predicted protein; K00104 (S)-2-hydroxy-acid oxidase YP_003114813.1 KEGG: Hypothetical protein CBG18987 YP_003114814.1 PFAM: sodium/hydrogen exchanger; KEGG: rfr:Rfer_1098 sodium/hydrogen exchanger YP_003114815.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bxe:Bxe_A0699 two component transcriptional regulator YP_003114816.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: swo:Swol_2176 hypothetical protein YP_003114818.1 PFAM: coagulation factor 5/8 type domain protein; ricin B lectin; glycoside hydrolase family 16; Ig family protein; SMART: ricin B lectin; Dystroglycan-type cadherin domain protein; coagulation factor 5/8 type domain protein; KEGG: ace:Acel_0129 carbohydrate-binding family 6 protein YP_003114819.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV_1093 magnesium or manganese-dependent protein phosphatase YP_003114820.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sgr:SGR_741 MarR family transcriptional regulator YP_003114821.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: mag:amb0333 anti-anti-sigma regulatory factor YP_003114822.1 KEGG: sma:SAV_1085 two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein YP_003114823.1 PFAM: stage II sporulation E family protein; ANTAR domain protein; SMART: protein phosphatase 2C domain protein; KEGG: sco:SCO7326 hypothetical protein YP_003114824.1 PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase; KEGG: ypg:YpAngola_0119 toxin YP_003114825.1 KEGG: mba:Mbar_A3085 hypothetical protein YP_003114826.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro01348 major facilitator superfamily multidrug resistance protein YP_003114827.1 PFAM: Roadblock/LC7 family protein; KEGG: fal:FRAAL0016 hypothetical protein YP_003114829.1 KEGG: fal:FRAAL0014 hypothetical protein YP_003114830.1 KEGG: nfa:nfa47700 hypothetical protein YP_003114831.1 KEGG: nfa:nfa47700 hypothetical protein YP_003114832.1 PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_4123 major facilitator transporter YP_003114833.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_254 TetR family transcriptional regulator YP_003114834.1 KEGG: sma:SAV_7317 hypothetical protein YP_003114835.1 SMART: helix-turn-helix domain protein; KEGG: fal:FRAAL6869 DNA-binding protein YP_003114836.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: fra:Francci3_2561 NAD(P)H dehydrogenase (quinone) YP_003114838.1 PFAM: TetR family transcriptional regulator; KEGG: msm:MSMEG_3360 transcriptional regulator YP_003114839.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: cvi:CV_3287 tautomerase YP_003114840.1 PFAM: WGR domain protein; SMART: WGR domain protein; KEGG: sco:SCO0563 hypothetical protein YP_003114841.1 PFAM: Curculin domain protein (mannose-binding) lectin; SMART: Curculin domain protein (mannose-binding) lectin; KEGG: rba:RB588 hypothetical protein YP_003114842.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: saq:Sare_4678 ArsR family transcriptional regulator YP_003114843.1 PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE2035 membrane transporter YP_003114844.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sen:SACE_2796 MarR family transcriptional regulator YP_003114845.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mab:MAB_1923c hypothetical protein YP_003114846.1 KEGG: sco:SCO7511 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003114847.1 PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sco:SCO7512 AraC family transcription regulator YP_003114848.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: stp:Strop_0077 ECF subfamily RNA polymerase sigma-24 factor YP_003114849.1 PFAM: aminodeoxychorismate lyase; KEGG: sco:SCO1499 integral membrane protein YP_003114850.1 PFAM: Penicillinase repressor; KEGG: sma:SAV_4693 hypothetical protein YP_003114851.1 PFAM: Recombinase; Resolvase domain; KEGG: fra:Francci3_2373 recombinase YP_003114853.1 PFAM: Ig family protein; KEGG: sma:SAV_5630 neutral zinc metalloprotease YP_003114854.1 KEGG: mar:MAE_29180 CsbD-like protein YP_003114855.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: fre:Franean1_6609 NmrA family protein YP_003114856.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fre:Franean1_6610 AraC family transcriptional regulator YP_003114857.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: nca:Noca_0015 phospholipid/glycerol acyltransferase YP_003114858.1 PFAM: patatin; KEGG: saq:Sare_4059 patatin YP_003114859.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL4746 integral membrane efflux protein YP_003114860.1 KEGG: fal:FRAAL2445 formate dehydrogenase (C-terminal); TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region YP_003114861.1 KEGG: stp:Strop_4200 hypothetical protein YP_003114862.1 PFAM: cellulose-binding family II; Fibronectin type III domain protein; SMART: cellulose-binding family II; KEGG: ote:Oter_3118 alpha-L-arabinofuranosidase- like protein YP_003114863.1 PFAM: protein of unknown function DUF214; KEGG: sgr:SGR_3756 hypothetical protein YP_003114864.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sgr:SGR_3757 ABC transporter ATP- binding protein YP_003114865.1 PFAM: transcriptional regulator PadR family protein; KEGG: rsa:RSal33209_0622 PadR-like family transcriptional regulator YP_003114867.1 KEGG: saq:Sare_4025 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003114868.1 KEGG: sma:SAV_7324 magnesium or manganese-dependent protein phosphatase; TIGRFAM: PAS sensor protein; PFAM: stage II sporulation E family protein; GAF domain protein; PAS fold domain protein; ATP-binding region ATPase domain protein; hypothetical protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; PAS domain containing protein YP_003114869.1 PFAM: beta-lactamase; KEGG: nca:Noca_3650 beta-lactamase domain- containing protein YP_003114870.1 TIGRFAM: mycothiol-dependent formaldehyde dehydrogenase; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: nca:Noca_3651 alcohol dehydrogenase YP_003114871.1 KEGG: sgr:SGR_1304 hypothetical protein YP_003114872.1 PFAM: hypothetical protein; SMART: Ig domain protein group 2 domain protein; KEGG: sen:SACE_1772 hypothetical protein YP_003114873.1 PFAM: conserved hypothetical protein; KEGG: mag:amb2859 Rossmann fold nucleotide-binding protein YP_003114874.1 PFAM: protein of unknown function DUF214; KEGG: sco:SCO2672 hypothetical protein YP_003114875.1 PFAM: protein of unknown function DUF214; KEGG: sgr:SGR_4858 hypothetical protein YP_003114876.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sco:SCO2674 ABC transporter ATP-binding protein YP_003114878.1 KEGG: afw:Anae109_3337 PRC-barrel domain-containing protein YP_003114879.1 KEGG: sco:SCO4689 hypothetical protein YP_003114880.1 KEGG: nca:Noca_1391 hypothetical protein YP_003114882.1 Catalyzes the conversion of citrate to isocitrate YP_003114884.1 PFAM: amino acid permease-associated region; KEGG: sco:SCO6014 cationic amino acid transporter YP_003114885.1 PFAM: ATP-binding region ATPase domain protein; KEGG: nfa:nfa23510 histidine kinase YP_003114886.1 PFAM: Roadblock/LC7 family protein; KEGG: nfa:nfa23520 hypothetical protein YP_003114887.1 PFAM: protein of unknown function DUF742; KEGG: nfa:nfa23530 hypothetical protein YP_003114888.1 PFAM: protein of unknown function ATP binding; KEGG: nfa:nfa23540 ATP/GTP-binding protein YP_003114889.1 KEGG: nfa:nfa22920 cytochrome P450 monooxygenase YP_003114890.1 PFAM: cytochrome P450; KEGG: sco:SCO2884 cytochrome P450 YP_003114891.1 PFAM: major facilitator superfamily MFS_1; KEGG: rsa:RSal33209_0919 MFS transporter YP_003114892.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: sgr:SGR_4106 ArsR family transcriptional regulator YP_003114893.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_5220 hypothetical protein YP_003114894.1 KEGG: fal:FRAAL2307 hypothetical protein YP_003114895.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fal:FRAAL2308 MarR family transcriptional regulator YP_003114896.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_6514 acetyltransferase YP_003114897.1 PFAM: aldo/keto reductase; KEGG: sma:SAV_1989 aryl-alcohol dehydrogenase YP_003114898.1 PFAM: TetR family transcriptional regulator; KEGG: mav:MAV_5064 TetR family transcriptional regulator protein YP_003114899.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sgr:SGR_1087 two-component system response regulator YP_003114900.1 KEGG: sgr:SGR_1088 two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003114901.1 KEGG: sgr:SGR_3791 hypothetical protein YP_003114902.1 PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; ATPase AAA; KEGG: fal:FRAAL0335 LuxR family transcriptional regulator YP_003114903.1 PFAM: Luciferase-like monooxygenase; KEGG: bur:Bcep18194_C6860 flavin-dependent oxidoreductase YP_003114904.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: saq:Sare_2568 amidohydrolase YP_003114905.1 KEGG: sgr:SGR_4418 lantibiotic precursor YP_003114906.1 PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4417 hypothetical protein YP_003114907.1 PFAM: ABC transporter; KEGG: stp:Strop_2429 ABC-2 type transporter YP_003114908.1 PFAM: ABC transporter; peptidase M50; SMART: AAA ATPase; KEGG: sgr:SGR_4415 ABC transporter ATP- binding protein YP_003114909.1 KEGG: sgr:SGR_4413 lantibiotic biosynthesis protein YP_003114910.1 PFAM: Lantibiotic dehydratase domain protein; KEGG: saq:Sare_2588 lantibiotic dehydratase domain- containing protein YP_003114911.1 PFAM: nitroreductase; KEGG: sgr:SGR_4411 hypothetical protein YP_003114912.1 PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4410 hypothetical protein YP_003114913.1 PFAM: protein of unknown function DUF181; KEGG: sgr:SGR_4409 hypothetical protein YP_003114914.1 PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: sgr:SGR_4408 AfsR-like transcriptional regulator YP_003114915.1 KEGG: aav:Aave_4781 RNP-1-like RNA-binding protein YP_003114916.1 KEGG: sco:SCO3729 regulatory protein YP_003114917.1 PFAM: aminoglycoside phosphotransferase; KEGG: sma:SAV_989 phosphotransferase YP_003114918.1 PFAM: beta-lactamase; KEGG: kra:Krad_1284 beta-lactamase YP_003114919.1 PFAM: glycoside hydrolase family 5; Fibronectin type III domain protein; cellulose-binding family II; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: ace:Acel_0614 glycoside hydrolase family protein YP_003114920.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sgr:SGR_207 GntR family transcriptional regulator YP_003114921.1 PFAM: dihydrodipicolinate synthetase; KEGG: sgr:SGR_208 dihydrodipicolinate synthase YP_003114922.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_003114923.1 KEGG: bmj:BMULJ_01682 spermidine/putrescine transport system substrate-binding protein YP_003114924.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bmt:BSUIS_B0801 hypothetical protein YP_003114925.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: azc:AZC_3345 ABC transporter membrane spanning protein YP_003114926.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: azc:AZC_3346 ABC transporter permease YP_003114927.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV_6359 hypothetical protein YP_003114928.1 KEGG: mmi:MMAR_3583 hypothetical protein YP_003114929.1 KEGG: sgr:SGR_6548 hypothetical protein YP_003114930.1 PFAM: carbohydrate-binding CenC domain protein; KEGG: sco:SCO2503 chitinase precursor YP_003114931.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; hypothetical protein; KEGG: saq:Sare_4650 RNA polymerase ECF-subfamily sigma factor YP_003114932.1 PFAM: YCII-related; KEGG: stp:Strop_4218 DGPFAETKE family protein YP_003114933.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_PF00545 hypothetical protein YP_003114934.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: fre:Franean1_6795 LuxR family transcriptional regulator YP_003114935.1 KEGG: cja:CJA_2305 hypothetical protein YP_003114936.1 PFAM: alpha/beta hydrolase fold protein; KEGG: cti:RALTA_A1627 epoxide hydrolase YP_003114937.1 KEGG: hypothetical protein YP_003114938.1 PFAM: TetR family transcriptional regulator; KEGG: msm:MSMEG_1745 transcriptional regulator YP_003114939.1 PFAM: TetR family transcriptional regulator; KEGG: kra:Krad_2619 TetR family transcriptional regulator YP_003114941.1 PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; KEGG: msm:MSMEG_3290 regulatory protein YP_003114942.1 KEGG: sco:SCO4460 hypothetical protein YP_003114943.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: mva:Mvan_5002 regulatory protein, LuxR YP_003114944.1 PFAM: Lanthionine synthetase C family protein; SMART: serine/threonine protein kinase; KEGG: sma:SAV_7503 membrane translocator YP_003114946.1 KEGG: hypothetical protein YP_003114947.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: sma:SAV_7501 ABC transporter ATP-binding membrane translocator, AmfB YP_003114948.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_7500 ABC transporter ATP-binding protein, AmfA YP_003114949.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; KEGG: ace:Acel_0195 LuxR family transcriptional regulator YP_003114950.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sma:SAV_1562 oxidoreductase YP_003114951.1 PFAM: transthyretin; KEGG: similar to CG30016-PA YP_003114952.1 KEGG: sen:SACE_2703 hypothetical protein YP_003114953.1 KEGG: scl:sce4054 protein kinase YP_003114954.1 PFAM: transcriptional activator domain; TPR repeat- containing protein; NB-ARC domain protein; transcriptional regulator domain protein; SMART: hypothetical protein; KEGG: fal:FRAAL2534 regulatory protein (AfsR-like protein) YP_003114955.1 KEGG: rha:RHA1_ro05010 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_003114956.1 PFAM: glycoside hydrolase, family 20, catalytic core; KEGG: sma:SAV_5268 beta-N-acetylhexosaminidase YP_003114958.1 PFAM: peptidase M19 renal dipeptidase; KEGG: nca:Noca_0102 thermostable dipeptidase YP_003114959.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: nfa:nfa24270 peptidase YP_003114960.1 KEGG: tpe:Tpen_1785 hypothetical protein YP_003114961.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: rsa:RSal33209_1319 O-succinylbenzoate synthase YP_003114962.1 PFAM: beta-lactamase; KEGG: pla:Plav_0772 beta-lactamase YP_003114963.1 KEGG: rsa:RSal33209_1306 transcriptional regulator YP_003114964.1 PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro01507 MaoC protein YP_003114965.1 KEGG: ace:Acel_1921 hypothetical protein YP_003114966.1 KEGG: aau:AAur_4189 hypothetical protein YP_003114967.1 PFAM: helix-turn-helix HxlR type; KEGG: mab:MAB_3696c transcriptional regulator YP_003114968.1 KEGG: sco:SCO0633 hypothetical protein YP_003114969.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sgr:SGR_5884 RNA polymerase ECF-subfamily sigma factor YP_003114970.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: sgr:SGR_1223 membrane-bound oxidoreductase YP_003114971.1 PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; KEGG: nca:Noca_4534 beta-Ig-H3/fasciclin YP_003114972.1 PFAM: protein of unknown function DUF1295; KEGG: sgr:SGR_5881 hypothetical protein YP_003114973.1 PFAM: protein of unknown function DUF1365; KEGG: sgr:SGR_5878 hypothetical protein YP_003114974.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: sgr:SGR_5877 amine oxidoreductase YP_003114975.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: sen:SACE_4097 deoxyribodipyrimidine photolyase YP_003114976.1 KEGG: kra:Krad_4140 hypothetical protein YP_003114977.1 KEGG: cms:CMS_1496 large integral membrane protein YP_003114978.1 KEGG: amt:Amet_1548 hypothetical protein YP_003114979.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: fal:FRAAL3845 AsnC family transcriptional regulator YP_003114980.1 KEGG: sma:SAV_696 hypothetical protein YP_003114981.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: msm:MSMEG_0282 hypothetical protein YP_003114982.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mab:MAB_0767c AraC family transcriptional regulator YP_003114983.1 KEGG: ank:AnaeK_3798 FHA domain containing protein YP_003114984.1 PFAM: ROK family protein; KEGG: nca:Noca_4635 ROK family protein YP_003114985.1 PFAM: ricin B lectin; glycoside hydrolase family 5; SMART: ricin B lectin; KEGG: sma:SAV_2186 secreted alpha-galactosidase YP_003114986.1 KEGG: fra:Francci3_3447 signal transduction histidine kinase YP_003114987.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: kra:Krad_1090 two component LuxR family transcriptional regulator YP_003114989.1 PFAM: inorganic pyrophosphatase; KEGG: nfa:nfa3850 inorganic pyrophosphatase YP_003114990.1 PFAM: cellulose-binding family II; SMART: cellulose-binding family II; KEGG: ace:Acel_0618 cellulose-binding family II protein YP_003114991.1 PFAM: chitin-binding domain 3 protein; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: sma:SAV_2254 cellulose binding protein YP_003114992.1 KEGG: rha:RHA1_ro03536 hypothetical protein YP_003114993.1 PFAM: cellulose-binding family II; SMART: cellulose-binding family II; KEGG: sco:SCO5786 secreted hydrolase YP_003114994.1 PFAM: cellulose-binding family II; Fibronectin type III domain protein; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: ote:Oter_3118 alpha-L-arabinofuranosidase- like protein YP_003114995.1 PFAM: condensation domain protein; KEGG: sgr:SGR_5180 hypothetical protein YP_003114996.1 PFAM: phytanoyl-CoA dioxygenase; KEGG: swi:Swit_0319 phytanoyl-CoA dioxygenase YP_003114997.1 PFAM: IucA/IucC family protein; KEGG: saq:Sare_2737 IucA/IucC family protein YP_003114998.1 KEGG: saq:Sare_2738 hypothetical protein YP_003114999.1 KEGG: saq:Sare_2739 L-lysine 6-monooxygenase (NADPH) YP_003115000.1 PFAM: pyridoxal-dependent decarboxylase; KEGG: sma:SAV_5272 L-2,4-diaminobutyrate decarboxylase YP_003115001.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: sma:SAV_5273 siderophore-interacting protein YP_003115002.1 PFAM: periplasmic binding protein; KEGG: saq:Sare_2741 periplasmic binding protein YP_003115003.1 PFAM: transporter permease; KEGG: stp:Strop_2553 transporter permease YP_003115004.1 PFAM: transporter permease; KEGG: saq:Sare_2743 transporter permease YP_003115005.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: stp:Strop_2555 ABC transporter YP_003115006.1 TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; KEGG: art:Arth_3780 NlpA lipoprotein YP_003115007.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sgr:SGR_1399 ABC-type sulfate transporter permease YP_003115008.1 PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: sma:SAV_1207 NAD(P)H-dependent FMN reductase YP_003115009.1 KEGG: tfu:Tfu_1690 twin-arginine translocation pathway signal YP_003115010.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: msm:MSMEG_1160 ABC-type nitrate/sulfonate/bicarbonate transporter ATPase component YP_003115011.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rha:RHA1_ro04945 ABC transporter permease component YP_003115012.1 KEGG: art:Arth_1300 nitrilotriacetate monooxygenase YP_003115013.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: sma:SAV_5415 taurine catabolism dioxygenase YP_003115014.1 KEGG: nca:Noca_1574 hypothetical protein YP_003115015.1 PFAM: oxidoreductase domain protein; semialdehyde dehydrogenase NAD - binding; homoserine dehydrogenase NAD- binding; oxidoreductase domain; KEGG: sgr:SGR_5229 oxidoreductase YP_003115016.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: sgr:SGR_6722 hypothetical protein YP_003115017.1 PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 16; KEGG: sco:SCO6596 secreted protein YP_003115019.1 KEGG: sco:SCO7723 hypothetical protein YP_003115020.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: swp:swp_0317 tRNA (guanosine-2'-O-)- methyltransferase YP_003115021.1 KEGG: bpl:BURPS1106A_1579 lipoprotein YP_003115022.1 PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: sco:SCO2431 alpha-L-arabinofuranosidase YP_003115023.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dge:Dgeo_2917 ABC-type sugar transporter, permease YP_003115024.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: dge:Dgeo_2918 ABC-type sugar transporter, permease YP_003115025.1 PFAM: extracellular solute-binding protein family 1; KEGG: bad:BAD_0153 solute binding protein of ABC transporter system YP_003115026.1 KEGG: sgr:SGR_6606 LacI family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003115027.1 PFAM: peptidase M55 D-aminopeptidase; KEGG: aoe:Clos_1006 peptidase M55 D-aminopeptidase YP_003115028.1 KEGG: sen:SACE_3318 esterase YP_003115029.1 TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; KEGG: stp:Strop_0864 HAD family hydrolase YP_003115030.1 PFAM: glycoside hydrolase; Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; KEGG: ote:Oter_3219 beta-glucosidase YP_003115031.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: sco:SCO6570 oxidoreductase YP_003115032.1 PFAM: xylose isomerase; AP endonuclease 2 domain protein; KEGG: sgr:SGR_1114 sugar phosphate isomerases/epimerases YP_003115033.1 KEGG: sen:SACE_1370 hypothetical protein YP_003115034.1 KEGG: sgr:SGR_6032 secreted protein YP_003115035.1 PFAM: oxidoreductase molybdopterin binding; KEGG: msm:MSMEG_0998 oxidoreductase, molybdopterin binding YP_003115036.1 KEGG: fra:Francci3_0982 hypothetical protein YP_003115037.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: mab:MAB_4369c ferredoxin subunit of phenylpropionate dioxygenase YP_003115038.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mab:MAB_4368c rubredoxin/ferredoxin reductase YP_003115039.1 PFAM: methionine synthase vitamin-B12 independent; KEGG: sgr:SGR_5029 5- methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase YP_003115040.1 PFAM: phosphoesterase; KEGG: sus:acid_4558 YVTN beta-propeller repeat- containing protein YP_003115041.1 KEGG: sgr:SGR_6992 hypothetical protein YP_003115042.1 PFAM: coagulation factor 5/8 type domain protein; carbohydrate binding family 6; SMART: cellulose binding type IV; coagulation factor 5/8 type domain protein; Parallel beta-helix repeat; KEGG: sgr:SGR_474 secreted protein YP_003115043.1 KEGG: mgi:Mflv_0526 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, subunit alpha; PFAM: coenzyme A transferase YP_003115044.1 KEGG: nca:Noca_1015 butyryl-CoA:acetate CoA transferase; TIGRFAM: 3-oxoacid CoA-transferase subunit beta; PFAM: coenzyme A transferase YP_003115045.1 PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: mva:Mvan_4404 intradiol ring-cleavage dioxygenase YP_003115046.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; iron dependent repressor; SMART: GntR family transcriptional regulator; KEGG: sgr:SGR_207 GntR family transcriptional regulator YP_003115047.1 PFAM: MaoC domain protein dehydratase; KEGG: mag:amb1218 acyl dehydratase YP_003115048.1 PFAM: YCII-related; KEGG: stp:Strop_2715 DGPFAETKE family protein YP_003115049.1 PFAM: FAD linked oxidase; Berberine/berberine domain protein; KEGG: stp:Strop_2731 FAD linked oxidase domain- containing protein YP_003115050.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sgr:SGR_628 RNA polymerase ECF-subfamily sigma factor YP_003115051.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL2257 oxidoreductase YP_003115052.1 PFAM: TetR family transcriptional regulator; KEGG: kra:Krad_2116 TetR family transcriptional regulator YP_003115053.1 PFAM: Glu/Leu/Phe/Val dehydrogenase dimerisation region; Glu/Leu/Phe/Val dehydrogenase; KEGG: bxe:Bxe_A2689 Glu/Leu/Phe/Val dehydrogenase YP_003115054.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: fal:FRAAL3845 AsnC family transcriptional regulator YP_003115056.1 KEGG: mav:MAV_4376 hypothetical protein YP_003115057.1 PFAM: ABC transporter; KEGG: rci:LRC215 ABC-type transporter, permease YP_003115058.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rci:LRC212 ABC-type transporter, ATPase component YP_003115059.1 KEGG: fre:Franean1_0105 hypothetical protein YP_003115060.1 PFAM: monooxygenase FAD-binding; KEGG: scl:sce4807 hypothetical protein YP_003115061.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: kra:Krad_2356 major facilitator transporter YP_003115062.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: kra:Krad_2864 MarR family transcriptional regulator YP_003115063.1 KEGG: sco:SCO2334 integral membrane protein YP_003115064.1 PFAM: TetR family transcriptional regulator; KEGG: mab:MAB_3462c TetR family transcriptional regulator YP_003115065.1 PFAM: O-methyltransferase family 3; KEGG: mmi:MMAR_0313 O-methyltransferase YP_003115066.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sen:SACE_4706 XRE family transcriptional regulator YP_003115067.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cmi:CMM_0687 short chain dehydrogenase YP_003115068.1 PFAM: protein of unknown function DUF1680; ricin B lectin; SMART: ricin B lectin; KEGG: sgr:SGR_6601 secreted protein YP_003115069.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sgr:SGR_6602 sugar uptake ABC transporter solute-binding protein YP_003115070.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sgr:SGR_6603 sugar uptake ABC transporter ATP-binding protein YP_003115071.1 PFAM: inner-membrane translocator; KEGG: sgr:SGR_6604 sugar uptake ABC transporter permease YP_003115072.1 PFAM: inner-membrane translocator; KEGG: sgr:SGR_6605 sugar uptake ABC transporter permease YP_003115073.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: sgr:SGR_6606 LacI family transcriptional regulator YP_003115074.1 PFAM: aldose 1-epimerase; KEGG: kra:Krad_0621 aldose 1-epimerase YP_003115075.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: sgr:SGR_547 50S ribosomal protein L31 YP_003115076.1 KEGG: rrs:RoseRS_3659 protein kinase YP_003115077.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO4454 transcriptional regulator YP_003115078.1 PFAM: carbonic anhydrase; KEGG: fal:FRAAL2803 hypothetical protein YP_003115079.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sma:SAV_7048 cation efflux system protein YP_003115080.1 KEGG: sco:SCO1084 thioredoxin YP_003115081.1 KEGG: sma:SAV_1484 hypothetical protein YP_003115082.1 KEGG: dge:Dgeo_1505 hypothetical protein YP_003115083.1 PFAM: TetR family transcriptional regulator; KEGG: sen:SACE_5390 TetR family transcriptional regulator YP_003115084.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rca:Rcas_3335 AMP-dependent synthetase and ligase YP_003115085.1 PFAM: major facilitator superfamily MFS_1; KEGG: kra:Krad_2704 major facilitator transporter YP_003115086.1 PFAM: ricin B lectin; KEGG: sco:SCO6456 hydrolytic protein YP_003115087.1 PFAM: ricin B lectin; KEGG: sco:SCO6456 hydrolytic protein YP_003115088.1 PFAM: tail sheath protein; KEGG: sco:SCO4253 hypothetical protein YP_003115089.1 TIGRFAM: conserved hypothetical protein; KEGG: sco:SCO4252 hypothetical protein YP_003115090.1 KEGG: sco:SCO4251 secreted protein YP_003115091.1 KEGG: sgr:SGR_2069 hypothetical protein YP_003115092.1 KEGG: proteophosphoglycan 5 YP_003115093.1 TIGRFAM: conserved hypothetical protein; KEGG: sco:SCO4248 hypothetical protein YP_003115094.1 PFAM: peptidoglycan-binding LysM; KEGG: sco:SCO4247 hypothetical protein YP_003115095.1 TIGRFAM: Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: sco:SCO4246 hypothetical protein YP_003115096.1 PFAM: GPW/gp25 family protein; KEGG: sco:SCO4245 hypothetical protein YP_003115097.1 KEGG: sco:SCO4244 hypothetical protein YP_003115098.1 TIGRFAM: phage tail protein; KEGG: sco:SCO4243 secreted protein YP_003115099.1 KEGG: sco:SCO4242 hypothetical protein YP_003115100.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sco:SCO4261 response regulator YP_003115101.1 KEGG: sco:SCO4260 hypothetical protein YP_003115102.1 PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: sco:SCO4259 ATPase AAA family protein YP_003115103.1 KEGG: sgr:SGR_165 hypothetical protein YP_003115105.1 PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: sma:SAV_1935 iron-sulfur binding oxidoreductase YP_003115106.1 KEGG: ace:Acel_1878 HesB/YadR/YfhF-family protein YP_003115107.1 PFAM: protein of unknown function DUF1470; KEGG: sgr:SGR_2243 hypothetical protein YP_003115108.1 PFAM: aldehyde dehydrogenase; KEGG: aau:AAur_0653 succinate-semialdehyde dehydrogenase YP_003115109.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_003115111.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll5401 hypothetical protein YP_003115113.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: mmi:MMAR_1816 L-lactate dehydrogenase (cytochrome) LldD1_1 YP_003115114.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: sth:STH770 LacI family transcriptional repressor YP_003115115.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: set:SEN1436 dehydratase YP_003115116.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_3653 NAD-dependent epimerase/dehydratase YP_003115117.1 PFAM: PHP domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding class 1; KEGG: dth:DICTH_1491 DNA polymerase beta family YP_003115118.1 KEGG: stp:Strop_2883 WGR domain-containing protein YP_003115119.1 PFAM: glycoside hydrolase family 10; cellulose- binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II; KEGG: ace:Acel_0180 glycoside hydrolase family protein YP_003115120.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: cmi:CMM_0295 LacI family transcriptional regulator YP_003115121.1 PFAM: ROK family protein; KEGG: sma:SAV_2091 transcriptional regulator YP_003115122.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO7410 binding-protein dependent transport protein YP_003115123.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_1029 ABC transporter permease YP_003115124.1 PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO7408 solute-binding lipoprotein YP_003115125.1 PFAM: glycoside hydrolase family 35; glycoside hydrolase family 42 domain protein; KEGG: cmi:CMM_2700 beta-galactosidase YP_003115126.1 KEGG: nca:Noca_2322 endonuclease/exonuclease/phosphatase YP_003115127.1 PFAM: glycoside hydrolase family 18; KEGG: sco:SCO7633 secreted endo-beta-N- acetylglucosaminidase YP_003115128.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO3207 TetR family transcriptional regulator YP_003115129.1 PFAM: protein of unknown function DUF1445; KEGG: sma:SAV_6940 hypothetical protein YP_003115130.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; Cna B domain protein; KEGG: sgr:SGR_4272 major facilitator superfamily permease YP_003115131.1 KEGG: bja:blr2505 hypothetical protein YP_003115132.1 PFAM: hypothetical protein; SMART: Ig domain protein group 2 domain protein; KEGG: sen:SACE_1772 hypothetical protein YP_003115133.1 PFAM: protein of unknown function DUF187; KEGG: bpl:BURPS1106A_1973 lipoprotein YP_003115134.1 PFAM: protein of unknown function DUF1025; KEGG: fre:Franean1_6886 hypothetical protein YP_003115135.1 PFAM: Wyosine base formation domain protein; KEGG: nfa:nfa56200 hypothetical protein YP_003115136.1 PFAM: protein of unknown function DUF1446; KEGG: nfa:nfa53320 hypothetical protein YP_003115137.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: nfa:nfa53310 acyl-CoA dehydrogenase YP_003115138.1 PFAM: carboxyl transferase; KEGG: rha:RHA1_ro01931 methylcrotonoyl-CoA carboxylase, beta chain YP_003115139.1 PFAM: carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: nfa:nfa53290 acetyl/propionyl-CoA carboxylase subunit alpha YP_003115140.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_003115141.1 PFAM: TetR family transcriptional regulator; KEGG: rha:RHA1_ro01927 TetR family transcriptional regulator YP_003115142.1 KEGG: sco:SCO5099 hypothetical protein YP_003115143.1 KEGG: afl:Aflv_2026 transcriptional regulator, LacI family (HTH and periplasmic-binding domains); PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003115144.1 PFAM: glycoside hydrolase clan GH-D; KEGG: sco:SCO0284 secreted alpha-galactosidase YP_003115145.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sen:SACE_4615 ATP-binding component of an ABC transporter YP_003115146.1 PFAM: Lanthionine synthetase C family protein; KEGG: hau:Haur_1868 lanthionine synthetase C family protein YP_003115147.1 KEGG: saq:Sare_2445 hypothetical protein YP_003115149.1 PFAM: lipolytic protein G-D-S-L family; KEGG: sma:SAV_1965 secreted protein YP_003115150.1 PFAM: carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carboxyl transferase; biotin/lipoyl attachment domain- containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: tfu:Tfu_1530 acetyl/propionyl-CoA carboxylase subunit alpha YP_003115151.1 KEGG: rso:RSc2571 hypothetical protein YP_003115152.1 KEGG: sma:SAV_2054 hypothetical protein YP_003115153.1 KEGG: sma:SAV_2053 methylated-DNA--protein-cysteine S-methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein YP_003115154.1 TIGRFAM: adenylylsulfate kinase; PFAM: adenylylsulfate kinase; KEGG: sco:SCO6099 adenylylsulfate kinase YP_003115155.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: hsl:OE1209F dehydratase-like protein YP_003115156.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO2353 hypothetical protein YP_003115157.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: fra:Francci3_1918 catalase/peroxidase HPI YP_003115158.1 PFAM: ferric-uptake regulator; KEGG: sco:SCO0561 Fe regulatory protein YP_003115159.1 PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sgr:SGR_1437 two-component system response regulator YP_003115160.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: sen:SACE_6703 two-component system sensor kinase YP_003115161.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: stp:Strop_4185 ABC transporter YP_003115162.1 PFAM: protein of unknown function DUF214; KEGG: sco:SCO3754 ABC transporter integral membrane subunit YP_003115163.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: nca:Noca_4005 glucose-methanol-choline oxidoreductase YP_003115164.1 PFAM: Vault protein inter-alpha-trypsin domain protein; von Willebrand factor type A; SMART: von Willebrand factor type A; Vault protein inter-alpha-trypsin, metazoa; KEGG: mmi:MMAR_3543 hypothetical protein YP_003115165.1 KEGG: mul:MUL_1446 conserved hypothetical secreted protein YP_003115166.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: ace:Acel_0393 serine-type D-Ala-D-Ala carboxypeptidase YP_003115167.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; pyrrolo-quinoline quinone; SMART: serine/threonine protein kinase; tyrosine protein kinase; pyrrolo-quinoline quinone; KEGG: nfa:nfa23650 serine/threonine protein kinase YP_003115169.1 PFAM: transcriptional activator domain; NB-ARC domain protein; transcriptional regulator; SMART: Tetratricopeptide domain protein; KEGG: sco:SCO4426 regulatory protein YP_003115170.1 KEGG: hypothetical protein YP_003115171.1 PFAM: isochorismatase hydrolase; KEGG: mxa:MXAN_3644 isochorismatase YP_003115172.1 KEGG: stp:Strop_1717 hypothetical protein YP_003115173.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO2490 dehydrogenase (secreted protein) YP_003115174.1 PFAM: methyltransferase small; methyltransferase type 12; KEGG: sco:SCO0760 methyltransferase YP_003115175.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: fal:FRAAL2534 regulatory protein (AfsR-like protein) YP_003115176.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lwe:lwe0247 acetyltransferase YP_003115177.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_003115178.1 KEGG: fra:Francci3_2206 hypothetical protein YP_003115179.1 KEGG: sco:SCO6532 nitrate reductase gamma chain NarI; TIGRFAM: respiratory nitrate reductase, subunit gamma; PFAM: nitrate reductase subunit gamma YP_003115180.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: nitrate reductase subunit delta; KEGG: sco:SCO6533 nitrate reductase delta chain NarJ YP_003115181.1 TIGRFAM: nitrate reductase subunit beta; KEGG: sco:SCO6534 nitrate reductase beta chain NarH YP_003115182.1 TIGRFAM: nitrate reductase, subunit alpha; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sco:SCO6535 nitrate reductase alpha chain NarG YP_003115183.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: sen:SACE_6153 hypothetical protein YP_003115184.1 PFAM: ArsR family transcriptional regulator; Helix-turn-helix type 11 domain protein; SMART: ArsR family transcriptional regulator; KEGG: sen:SACE_6152 ArsR family transcriptional regulator YP_003115185.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: sgr:SGR_4869 kinase YP_003115187.1 TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: saq:Sare_2696 phenylacetic acid degradation protein PaaD YP_003115188.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: nfa:nfa28360 DNA glycosylase YP_003115189.1 PFAM: cytochrome P450; KEGG: sen:SACE_5814 cytochrome P450-like enzyme YP_003115190.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: ace:Acel_1814 inositol 2-dehydrogenase YP_003115191.1 PFAM: xylose isomerase; KEGG: mgi:Mflv_2612 xylose isomerase domain- containing protein YP_003115192.1 PFAM: PfkB domain protein; KEGG: kra:Krad_4059 ribokinase-like domain- containing protein YP_003115194.1 KEGG: ace:Acel_1802 hypothetical protein YP_003115195.1 PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: ace:Acel_1800 thiamine pyrophosphate binding domain-containing protein YP_003115196.1 KEGG: kra:Krad_4054 periplasmic binding protein/LacI transcriptional regulator YP_003115197.1 PFAM: inner-membrane translocator; KEGG: cms:CMS_2387 ABC transporter permease YP_003115198.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cms:CMS_2386 ABC transporter ATP-binding protein YP_003115199.1 PFAM: inositol monophosphatase; KEGG: rrs:RoseRS_3316 inositol monophosphatase YP_003115200.1 PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_2303 major facilitator transporter YP_003115201.1 KEGG: stp:Strop_2302 ArsR family transcriptional regulator YP_003115202.1 KEGG: mes:Meso_2583 4'-phosphopantetheinyl transferase YP_003115203.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_5623 acetyltransferase YP_003115204.1 KEGG: nca:Noca_3186 hypothetical protein YP_003115205.1 PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; zinc finger Fpg domain protein; KEGG: sco:SCO0945 formamidopyrimidine-DNA glycosylase YP_003115206.1 KEGG: xfm:Xfasm12_1189 disulphide isomerase YP_003115207.1 KEGG: hau:Haur_4087 hypothetical protein YP_003115208.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: kra:Krad_3937 hypothetical protein YP_003115209.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: kra:Krad_3938 LysR family transcriptional regulator YP_003115210.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: hypothetical protein; K07034 YP_003115211.1 TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV_4599 acetyl-CoA synthetase YP_003115212.1 PFAM: arsenate reductase; KEGG: sco:SCO2206 hypothetical protein YP_003115213.1 KEGG: sen:SACE_4220 hypothetical protein YP_003115214.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce6740 AraC family transcriptional regulator YP_003115215.1 KEGG: sma:SAV_2138 hypothetical protein YP_003115216.1 PFAM: glycoside hydrolase; KEGG: saq:Sare_1755 glycoside hydrolase family 3 protein YP_003115217.1 PFAM: conserved hypothetical protein; KEGG: sma:SAV_6610 hypothetical protein YP_003115218.1 PFAM: GCN5-related N-acetyltransferase; KEGG: saq:Sare_0313 GCN5-related N- acetyltransferase YP_003115219.1 PFAM: beta-lactamase; KEGG: sth:STH635 beta-lactamase YP_003115220.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: tfu:Tfu_2323 transcriptional regulator YP_003115221.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_003115222.1 PFAM: extracellular solute-binding protein family 5; KEGG: sto:ST2534 hypothetical protein YP_003115223.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: tte:TTE0225 ABC-type dipeptide/oligopeptide/nickel transporters, permeases YP_003115224.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sth:STH298 oligopeptide ABC transporter permease protein YP_003115225.1 KEGG: tpe:Tpen_1635 peptide ABC transporter ATPase; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003115226.1 KEGG: nth:Nther_2392 peptide ABC transporter ATPase; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003115227.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_003115228.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: sgr:SGR_1152 carboxypeptidase YP_003115229.1 KEGG: mab:MAB_3640c hypothetical protein YP_003115230.1 PFAM: protein of unknown function DUF779; KEGG: sco:SCO1192 hypothetical protein YP_003115231.1 PFAM: aldehyde dehydrogenase; KEGG: sma:SAV_7177 aldehyde dehydrogenase YP_003115232.1 PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE2035 membrane transporter YP_003115233.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: fre:Franean1_2189 3-hydroxybutyryl-CoA dehydrogenase YP_003115234.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: sco:SCO3051 acyl-CoA dehydrogenase YP_003115235.1 PFAM: ATP-binding region ATPase domain protein; KEGG: fre:Franean1_6225 PAS/PAC sensor protein YP_003115236.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: rxy:Rxyl_2804 anti-sigma-factor antagonist YP_003115237.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: fal:FRAAL4041 Rieske Fe-S membrane protein YP_003115238.1 PFAM: protein of unknown function DUF1130; KEGG: sco:SCO7664 hypothetical protein YP_003115239.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: sen:SACE_4177 hypothetical protein YP_003115242.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sco:SCO7374 nitrate reductase NarB (fragment) YP_003115243.1 KEGG: sco:SCO7373 hypothetical protein YP_003115244.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: cmi:CMM_2158 serine/threonine protein kinase YP_003115245.1 PFAM: isochorismatase hydrolase; KEGG: sco:SCO7455 isochorismatase YP_003115246.1 PFAM: branched-chain amino acid transport; KEGG: fal:FRAAL3548 inner membrane protein YP_003115247.1 PFAM: AzlC family protein; KEGG: fal:FRAAL3549 branched-chain amino acid permease (azaleucine resistance) YP_003115248.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: nfa:nfa13110 DNA-binding protein YP_003115249.1 KEGG: saq:Sare_1732 GCN5-related N- acetyltransferase YP_003115250.1 PFAM: O-methyltransferase family 2; KEGG: sma:SAV_2843 O-methyltransferase YP_003115251.1 PFAM: acyltransferase 3; KEGG: mpa:MAP1753 hypothetical protein YP_003115252.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV_1495 hydroxylase YP_003115253.1 KEGG: GK21299 YP_003115255.1 KEGG: gdj:Gdia_1713 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein YP_003115256.1 KEGG: nca:Noca_2065 glycosyl transferase, group 1 YP_003115257.1 PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; KEGG: tfu:Tfu_1630 oligopeptide/dipeptide ABC transporter ATP-binding protein, C-terminal YP_003115258.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_3088 ABC transporter system integral membrane protein YP_003115259.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_3089 ABC transporter system integral membrane protein YP_003115260.1 PFAM: extracellular solute-binding protein family 5; KEGG: sma:SAV_3090 ABC transporter substrate-binding protein YP_003115262.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO0337 transcriptional regulator YP_003115263.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gdi:GDI2727 hypothetical protein YP_003115264.1 PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_0084 GCN5-related N- acetyltransferase YP_003115265.1 PFAM: cupin; KEGG: kra:Krad_2295 cupin 2 domain-containing protein YP_003115266.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rfr:Rfer_4023 MerR family transcriptional regulator YP_003115267.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: bra:BRADO5042 dihydrokaempferol 4- reductase (NAD-dependent epimerase/dehydratase) YP_003115268.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rha:RHA1_ro04790 transcriptional regulator YP_003115269.1 PFAM: membrane protein of uknown function UCP014873; KEGG: sgr:SGR_6766 hypothetical protein YP_003115270.1 PFAM: NUDIX hydrolase; KEGG: sen:SACE_2792 MutT-like domain-containing protein YP_003115271.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sgr:SGR_689 oxidoreductase YP_003115272.1 TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: sma:SAV_2253 hypothetical protein YP_003115273.1 KEGG: sco:SCO4210 hypothetical protein YP_003115274.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO5238 TetR-family protein YP_003115275.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: ank:AnaeK_3358 alcohol dehydrogenase zinc- binding domain protein YP_003115276.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: Muc19; mucin 19 YP_003115277.1 PFAM: TrmB family transcriptional regulator; SMART: regulatory protein LuxR; KEGG: sco:SCO1353 transcriptional regulator YP_003115278.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO2873 hypothetical protein YP_003115279.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_3958 acetyltransferase YP_003115280.1 PFAM: YCII-related; KEGG: art:Arth_3350 DGPFAETKE family protein YP_003115281.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: art:Arth_3349 RNA polymerase, sigma- 24 subunit, ECF subfamily YP_003115282.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO4451 export protein YP_003115283.1 PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_6965 major facilitator transporter YP_003115284.1 PFAM: TetR family transcriptional regulator; KEGG: ace:Acel_0290 TetR family transcriptional regulator YP_003115285.1 KEGG: sco:SCO3288 integral membrane protein YP_003115286.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mab:MAB_1294c hypothetical protein YP_003115287.1 PFAM: Smr protein/MutS2; KEGG: sen:SACE_5417 Smr protein/MutS2 YP_003115288.1 PFAM: ThiJ/PfpI domain protein; KEGG: sgr:SGR_1205 hypothetical protein YP_003115289.1 KEGG: sgr:SGR_6765 hypothetical protein YP_003115290.1 KEGG: npu:Npun_F3074 hypothetical protein YP_003115291.1 PFAM: protein of unknown function DUF1963; KEGG: cco:CCC13826_0556 peptide methionine sulfoxide reductase MsrA/MsrB YP_003115292.1 PFAM: protein of unknown function DUF952; KEGG: sye:Syncc9902_1396 glutathione S-transferase domain-containing protein YP_003115293.1 PFAM: nucleotidyl transferase; KEGG: saq:Sare_0882 mannose-1-phosphate guanylyltransferase (GDP) YP_003115296.1 PFAM: NLP/P60 protein; KEGG: sco:SCO2135 secreted protein YP_003115297.1 PFAM: Linocin_M18 bacteriocin protein; KEGG: bbr:BB2479 bacteriocin YP_003115298.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: sgr:SGR_771 Dyp-type peroxidase YP_003115299.1 KEGG: sma:SAV_4743 hypothetical protein YP_003115300.1 KEGG: fra:Francci3_4187 biotin synthase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003115302.1 PFAM: Luciferase-like monooxygenase; KEGG: fal:FRAAL3435 monooxygenase YP_003115303.1 SMART: ArsR family transcriptional regulator; KEGG: sgr:SGR_4281 ArsR family transcriptional regulator YP_003115304.1 PFAM: major facilitator superfamily MFS_1; KEGG: bcy:Bcer98_1625 major facilitator transporter YP_003115305.1 TIGRFAM: non-ribosomal peptide synthetase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; transferase; phosphopantetheine-binding; KEGG: rha:RHA1_ro04382 non-ribosomal peptide synthetase YP_003115306.1 PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: rha:RHA1_ro04381 aminopeptidase YP_003115307.1 PFAM: pirin; KEGG: sma:SAV_4392 pirin-like protein YP_003115308.1 PFAM: cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase type 11; methyltransferase type 12; KEGG: fre:Franean1_2375 cyclopropane-fatty-acyl- phospholipid synthase YP_003115309.1 KEGG: sma:SAV_6169 hypothetical protein YP_003115310.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; KEGG: sma:SAV_1966 exonuclease YP_003115311.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sgr:SGR_2799 hypothetical protein YP_003115312.1 KEGG: hch:HCH_04340 hypothetical protein YP_003115313.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_0801 acetyltransferase YP_003115314.1 KEGG: pfo:Pfl01_1841 terpene synthase, metal- binding YP_003115315.1 PFAM: methyltransferase type 11; KEGG: sen:SACE_3721 methyltransferase YP_003115316.1 KEGG: sen:SACE_3722 terpene synthase, metal-binding YP_003115317.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: sgr:SGR_1270 nucleotide-binding protein YP_003115318.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sgr:SGR_3909 MarR family transcriptional regulator YP_003115319.1 PFAM: major facilitator superfamily MFS_1; KEGG: cms:CMS_0236 integral membrane efflux protein YP_003115320.1 PFAM: O-methyltransferase family 3; KEGG: saq:Sare_0793 caffeoyl-CoA O- methyltransferase YP_003115321.1 KEGG: sco:SCO4538 hypothetical protein YP_003115322.1 KEGG: sco:SCO4534 hypothetical protein YP_003115323.1 KEGG: sgr:SGR_2179 transcription termination factor Rho YP_003115324.1 KEGG: sco:SCO4536 hypothetical protein YP_003115325.1 KEGG: sco:SCO4537 hypothetical protein YP_003115326.1 PFAM: integrase family protein; KEGG: mmi:MMAR_1817 integrase/recombinase XerC YP_003115327.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: sco:SCO1209 acyl-CoA dehydrogenase YP_003115328.1 PFAM: TetR family transcriptional regulator; KEGG: sma:SAV_7127 TetR family transcriptional regulator YP_003115329.1 PFAM: polysaccharide deacetylase; KEGG: stp:Strop_0292 polysaccharide deacetylase YP_003115330.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ecl:EcolC_1298 L-carnitine dehydratase/bile acid-inducible protein F YP_003115331.1 KEGG: cms:CMS_0340 integral membrane protein YP_003115332.1 PFAM: protein of unknown function DUF833; KEGG: tfu:Tfu_1833 hypothetical protein YP_003115333.1 KEGG: stp:Strop_1374 hypothetical protein YP_003115334.1 KEGG: stp:Strop_1375 hypothetical protein YP_003115335.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: msm:MSMEG_5678 glyoxalase/bleomycin resistance protein/dioxygenase YP_003115336.1 KEGG: sgr:SGR_4717 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003115337.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_2298 acetyltransferase YP_003115338.1 KEGG: fra:Francci3_1867 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_003115339.1 KEGG: nfa:nfa18560 hypothetical protein YP_003115340.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: tfu:Tfu_0908 hypothetical protein YP_003115341.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: fre:Franean1_2353 alkylhydroperoxidase YP_003115342.1 KEGG: hypothetical protein YP_003115343.1 PFAM: ricin B lectin; glycoside hydrolase clan GH- D; SMART: ricin B lectin; KEGG: alpha-D-galactosidase (melibiase) YP_003115344.1 KEGG: SNF2 superfamily protein YP_003115345.1 KEGG: saq:Sare_1689 glycosyl transferase group 1 YP_003115347.1 KEGG: sma:SAV_1226 acetyltransferase YP_003115348.1 PFAM: helix-turn-helix HxlR type; KEGG: nfa:nfa54370 transcriptional regulator YP_003115349.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa54380 short chain dehydrogenase YP_003115350.1 PFAM: beta-lactamase; KEGG: sma:SAV_1217 metallo-beta-lactamase YP_003115351.1 PFAM: TetR family transcriptional regulator; KEGG: aau:AAur_1120 TetR family transcriptional regulator YP_003115352.1 PFAM: Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: aau:AAur_1122 NAD dependent epimerase/dehydratase family protein YP_003115353.1 PFAM: glycoside hydrolase; Ig domain protein group 2 domain protein; KEGG: ote:Oter_3219 beta-glucosidase YP_003115354.1 PFAM: ROK family protein; KEGG: nca:Noca_3264 ROK family protein YP_003115355.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: fal:FRAAL1886 membrane transporter YP_003115356.1 PFAM: glycoside hydrolase family 19; ricin B lectin; SMART: ricin B lectin; KEGG: rsa:RSal33209_0356 endochitinase YP_003115357.1 KEGG: fre:Franean1_6251 daunorubicin resistance ABC transporter ATPase; TIGRFAM: daunorubicin resistance ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003115358.1 PFAM: ABC transporter; KEGG: fre:Franean1_6250 ABC transporter YP_003115359.1 PFAM: transcriptional regulator; transcriptional activator domain; SMART: ATPase AAA; KEGG: fra:Francci3_2022 transcriptional regulator YP_003115360.1 KEGG: sma:SAV_1723 mycodextranase YP_003115361.1 SMART: helix-turn-helix domain protein; KEGG: mva:Mvan_5465 XRE family transcriptional regulator YP_003115362.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: kra:Krad_1945 short-chain dehydrogenase/reductase SDR YP_003115363.1 KEGG: fre:Franean1_0258 hypothetical protein YP_003115364.1 SMART: helix-turn-helix domain protein; KEGG: sco:SCO4680 DNA-binding protein YP_003115365.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: stp:Strop_2373 short-chain dehydrogenase/reductase SDR YP_003115366.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: saq:Sare_1307 short-chain dehydrogenase/reductase SDR YP_003115367.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: stp:Strop_2370 4-oxalocrotonate tautomerase YP_003115368.1 PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: sen:SACE_0421 transcriptional regulator YP_003115369.1 KEGG: ace:Acel_0572 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase YP_003115370.1 PFAM: UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: ace:Acel_0574 GntR family transcriptional regulator YP_003115371.1 PFAM: oxidoreductase domain protein; KEGG: sco:SCO0735 oxidoreductase YP_003115372.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: kra:Krad_0581 alanine racemase YP_003115373.1 PFAM: condensation domain protein; KEGG: sgr:SGR_5180 hypothetical protein YP_003115374.1 TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: kra:Krad_1367 50S ribosomal protein L28 YP_003115375.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: sco:SCO2200 hypothetical protein YP_003115376.1 PFAM: helix-turn-helix HxlR type; KEGG: sco:SCO2201 hypothetical protein YP_003115377.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sma:SAV_2569 LacI family transcriptional regulator YP_003115378.1 PFAM: glycoside hydrolase family 42 domain protein; beta-galactosidase trimerisation domain protein; KEGG: sco:SCO5689 beta-galactosidase YP_003115379.1 PFAM: glycoside hydrolase; KEGG: sma:SAV_2578 sugar hydrolase YP_003115380.1 KEGG: cms:CMS_1021 integral membrane protein YP_003115382.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: kra:Krad_0411 binding-protein-dependent transport systems inner membrane component YP_003115383.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: tfu:Tfu_1610 transporter integral membrane protein YP_003115384.1 PFAM: extracellular solute-binding protein family 1; KEGG: kra:Krad_0409 extracellular solute-binding protein YP_003115385.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides YP_003115386.1 PFAM: acetyl xylan esterase; KEGG: rrs:RoseRS_0796 acetyl xylan esterase YP_003115387.1 PFAM: alpha amylase catalytic region; glycoside hydrolase starch-binding; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; alpha amylase all-beta; KEGG: saq:Sare_2896 alpha-amylase YP_003115388.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: bpt:Bpet2422 RhtB family transporter YP_003115389.1 PFAM: ROK family protein; KEGG: sco:SCO0275 transcriptional repressor protein YP_003115390.1 PFAM: extracellular solute-binding protein family 1; KEGG: kra:Krad_2164 extracellular solute-binding protein YP_003115391.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bcz:BCZK1635 sugar ABC transporter permease YP_003115392.1 PFAM: oxidoreductase domain protein; binding- protein-dependent transporters inner membrane component; oxidoreductase domain; KEGG: sco:SCO0276 oxidoreductase YP_003115393.1 PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: hypothetical protein YP_003115394.1 PFAM: PfkB domain protein; KEGG: aba:acid345_0660 sugar kinase, ribokinase family YP_003115395.1 PFAM: glycoside hydrolase family 4; KEGG: msm:MSMEG_0514 alpha-galactosidase YP_003115396.1 PFAM: sugar isomerase (SIS); KEGG: sma:SAV_1446 putave phosphosugar isomerase YP_003115397.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO0540 sugar transport membrane protein YP_003115398.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO0539 sugar transporter membrane protein YP_003115399.1 PFAM: extracellular solute-binding protein family 1; KEGG: msm:MSMEG_0515 probable sugar transporter sugar binding lipoprotein YP_003115400.1 PFAM: DeoR family transcriptional regulator; SMART: DeoR family transcriptional regulator; KEGG: sen:SACE_6315 DeoR family transcriptional regulator YP_003115401.1 KEGG: aba:acid345_4387 hypothetical protein YP_003115402.1 PFAM: TM1410 hypothetical-related protein; KEGG: sco:SCO2178 endo alpha-1,4 polygalactosaminidase YP_003115403.1 PFAM: sodium/hydrogen exchanger; KEGG: mjl:Mjls_4930 sodium/hydrogen exchanger YP_003115404.1 PFAM: inner-membrane translocator; KEGG: dth:DICTH_1533 ribose transporter permease RbsC YP_003115405.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: smd:Smed_5743 ABC transporter YP_003115406.1 KEGG: tma:TM0114 sugar ABC transporter periplasmic sugar-binding protein YP_003115407.1 KEGG: scl:sce3317 HTH-type transcriptional repressor PurR; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003115408.1 PFAM: amino acid-binding ACT domain protein; KEGG: sgr:SGR_6257 hypothetical protein YP_003115409.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_3391 acetyltransferase YP_003115410.1 KEGG: bmj:BMULJ_04307 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003115411.1 KEGG: sgr:SGR_6152 hypothetical protein YP_003115412.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sen:SACE_3156 large transcriptional regulator YP_003115413.1 KEGG: ses:SARI_02830 galactoside O- acetyltransferase YP_003115414.1 KEGG: bmv:BMASAVP1_A0748 serine protease YP_003115415.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism YP_003115416.1 catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate YP_003115417.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate YP_003115418.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: scl:sce3317 HTH-type transcriptional repressor PurR YP_003115419.1 PFAM: inner-membrane translocator; KEGG: kra:Krad_2944 monosaccharide-transporting ATPase YP_003115420.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cmi:CMM_0880 sugar ABC transporter ATPase component YP_003115421.1 KEGG: kra:Krad_2946 sugar ABC transporter YP_003115422.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mrd:Mrad2831_6402 GCN5-related N- acetyltransferase YP_003115423.1 KEGG: nca:Noca_3422 hypothetical protein YP_003115424.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: msm:MSMEG_0104 LysR family transcriptional regulator protein YP_003115425.1 PFAM: major facilitator superfamily MFS_1; KEGG: acr:Acry_1491 major facilitator transporter YP_003115426.1 TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: xanthine/uracil/vitamin C permease; KEGG: rha:RHA1_ro04515 xanthine/uracil permease YP_003115427.1 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_003115428.1 KEGG: sen:SACE_6727 allantoinase; TIGRFAM: allantoinase; PFAM: amidohydrolase; amidohydrolase YP_003115429.1 KEGG: sgr:SGR_1188 glycerate kinase; TIGRFAM: glycerate kinase; PFAM: glycerate kinase YP_003115430.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate YP_003115431.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; KEGG: sen:SACE_6730 2-hydroxy-3-oxopropionate reductase YP_003115432.1 PFAM: xylose isomerase; KEGG: sco:SCO6206 oxidoreductase YP_003115433.1 KEGG: rha:RHA1_ro02577 hypothetical protein YP_003115434.1 PFAM: protein of unknown function DUF182; KEGG: fal:FRAAL3797 xanthine dehydrogenase YP_003115435.1 TIGRFAM: xanthine dehydrogenase D subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: sen:SACE_1261 aldehyde oxidase and xanthine dehydrogenase,molybdopterin binding YP_003115436.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway. YP_003115437.1 PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: sen:SACE_1263 (2Fe-2S)-binding protein YP_003115438.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: sen:SACE_1264 molybdopterin dehydrogenase, FAD-binding protein YP_003115439.1 KEGG: sen:SACE_6736 urate oxidase; TIGRFAM: urate oxidase; PFAM: Uricase YP_003115440.1 TIGRFAM: hydroxyisourate hydrolase; PFAM: transthyretin; KEGG: mmi:MMAR_4947 hypothetical protein YP_003115441.1 TIGRFAM: OHCU decarboxylase; KEGG: kra:Krad_2069 hypothetical protein YP_003115442.1 PFAM: purine catabolism PurC domain protein; KEGG: sgr:SGR_1356 regulatory protein YP_003115443.1 KEGG: sgr:SGR_1296 hypothetical protein YP_003115444.1 KEGG: sma:SAV_6027 integral membrane protein YP_003115445.1 KEGG: mba:Mbar_A3461 hypothetical protein; TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: SMP-30/gluconolaconase/LRE domain protein; NHL repeat containing protein; SMART: pyrrolo-quinoline quinone YP_003115446.1 KEGG: sgr:SGR_4660 hypothetical protein YP_003115447.1 KEGG: rha:RHA1_ro05548 transcriptional regulator YP_003115448.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: fre:Franean1_4326 RNA polymerase ECF- subfamily sigma factor YP_003115449.1 PFAM: YCII-related; KEGG: stp:Strop_4403 DGPFAETKE family protein YP_003115450.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV_476 hypothetical protein YP_003115451.1 KEGG: nca:Noca_2193 DoxX family protein YP_003115452.1 PFAM: protein of unknown function DUF574; KEGG: sma:SAV_4789 hypothetical protein YP_003115453.1 KEGG: bma:BMA1783 hypothetical protein YP_003115454.1 PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_6801 major facilitator superfamily permease YP_003115455.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: sgr:SGR_6800 ArsR family transcriptional regulator YP_003115456.1 PFAM: protein of unknown function DUF574; KEGG: sma:SAV_7303 hypothetical protein YP_003115457.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: stp:Strop_3591 xylulokinase YP_003115458.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: mxa:MXAN_0533 NAD dependent epimerase/dehydratase family YP_003115460.1 PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: mlo:mll2041 short chain oxidoreductase YP_003115461.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: fra:Francci3_0236 HemK family modification methylase YP_003115462.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: stp:Strop_2347 phage integrase family protein YP_003115463.1 KEGG: sen:SACE_3614 hypothetical protein YP_003115464.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: nca:Noca_3853 regulatory protein, MarR YP_003115465.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sma:SAV_5394 hypothetical protein YP_003115466.1 PFAM: saccharopine dehydrogenase; KEGG: saq:Sare_3639 saccharopine dehydrogenase (NAD(+), L-glutamate-forming) YP_003115468.1 PFAM: PEBP family protein; KEGG: mmi:MMAR_3122 hypothetical protein YP_003115469.1 KEGG: mjl:Mjls_1170 hypothetical protein YP_003115470.1 PFAM: acyl-CoA thioesterase; KEGG: sen:SACE_5719 acyl-CoA thioesterase II YP_003115471.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: sma:SAV_6080 1-acylglycerol-3-phosphate O- acyltransferase YP_003115472.1 PFAM: Sel1 domain protein repeat-containing protein; hypothetical protein; SMART: Sel1 domain protein repeat-containing protein; hypothetical protein; KEGG: sco:SCO5205 hypothetical protein YP_003115473.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bay:RBAM_020210 hypothetical protein YP_003115474.1 KEGG: cti:RALTA_B0485 glyoxalase/dioxygenase YP_003115475.1 PFAM: hypothetical protein; KEGG: sgr:SGR_6156 hypothetical protein YP_003115476.1 PFAM: glutamate--cysteine ligase; KEGG: sma:SAV_6990 hypothetical protein YP_003115477.1 PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: stp:Strop_3594 von Willebrand factor, type A YP_003115478.1 KEGG: sma:SAP1p42 hypothetical protein YP_003115479.1 PFAM: aminoglycoside phosphotransferase; KEGG: stp:Strop_2326 aminoglycoside phosphotransferase YP_003115481.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO5401 integral membrane protein YP_003115482.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_003115483.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_1169 acetyltransferase YP_003115484.1 KEGG: sco:SCO2524 hypothetical protein YP_003115485.1 KEGG: fre:Franean1_6893 nucleotide-binding protein YP_003115486.1 KEGG: sco:SCO2522 hypothetical protein YP_003115487.1 KEGG: fal:FRAAL0367 hypothetical protein YP_003115489.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO2526 acetyltransferase YP_003115490.1 KEGG: fal:FRAAL0367 hypothetical protein YP_003115491.1 KEGG: sco:SCO2522 hypothetical protein YP_003115492.1 KEGG: sco:SCO2523 hypothetical protein YP_003115493.1 KEGG: sco:SCO2524 hypothetical protein YP_003115495.1 PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO1669 ATP/GTP-binding protein YP_003115496.1 PFAM: aldo/keto reductase; KEGG: sma:SAV_6640 oxidoreductase YP_003115497.1 KEGG: sco:SCO1671 hypothetical protein YP_003115498.1 KEGG: sma:SAV_6577 secreted hydrolase YP_003115499.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: sgr:SGR_3685 transmembrane protein YP_003115500.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sgr:SGR_2194 serine/threonine protein kinase YP_003115501.1 KEGG: sco:SCO1672 hypothetical protein YP_003115502.1 PFAM: alpha/beta hydrolase fold protein; KEGG: saq:Sare_3820 alpha/beta hydrolase fold protein YP_003115503.1 KEGG: sgr:SGR_1676 hypothetical protein YP_003115504.1 PFAM: protein of unknown function DUF1260; KEGG: fnu:FN0296 cytoplasmic protein YP_003115505.1 PFAM: FAD linked oxidase; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: fra:Francci3_0962 D-lactate dehydrogenase (cytochrome) YP_003115506.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: saq:Sare_4498 glyoxalase/bleomycin resistance protein/dioxygenase YP_003115507.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sgr:SGR_3757 ABC transporter ATP- binding protein YP_003115508.1 PFAM: transcriptional regulator PadR family protein; KEGG: sgr:SGR_3758 PadR family transcriptional regulator YP_003115509.1 KEGG: sgr:SGR_7002 hypothetical protein YP_003115510.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: sen:SACE_2977 BadM/Rrf2 family transcriptional regulator YP_003115511.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpt:Bpet2895 MFS efflux transporter YP_003115512.1 PFAM: glycoside hydrolase, family 20, catalytic core; KEGG: ace:Acel_0072 beta-N-acetylhexosaminidase YP_003115513.1 PFAM: protein of unknown function DUF214; KEGG: sgr:SGR_3756 hypothetical protein YP_003115514.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: mav:MAV_3775 ammonium transporter YP_003115515.1 PFAM: nitrogen regulatory protein P-II; KEGG: sco:SCO5584 nitrogen regulatory protein P-II YP_003115516.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: met:M446_1395 galactose oxidase YP_003115517.1 PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; KEGG: pol:Bpro_3193 transcriptional regulator, LuxR family YP_003115518.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sen:SACE_1293 acyl-CoA synthase YP_003115519.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sen:SACE_1293 acyl-CoA synthase YP_003115520.1 PFAM: lipase class 2; KEGG: sco:SCO1735 secreted lipase YP_003115521.1 KEGG: tfu:Tfu_0904 hypothetical protein YP_003115522.1 KEGG: bur:Bcep18194_B0773 PEP phosphonomutase YP_003115523.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_6708 acetyltransferase YP_003115524.1 KEGG: sgr:SGR_3569 hypothetical protein YP_003115525.1 PFAM: TetR family transcriptional regulator; KEGG: mjl:Mjls_4879 TetR family transcriptional regulator YP_003115526.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_5374 major facilitator transporter YP_003115527.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_1245 cell wall protein YP_003115528.1 KEGG: stp:Strop_0137 sterol-binding domain- containing protein YP_003115529.1 PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro05062 acyl dehydratase YP_003115530.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpa:RPA3304 3-oxoacyl-acyl carrier protein reductase YP_003115531.1 PFAM: aldo/keto reductase; KEGG: mpa:MAP1752c hypothetical protein YP_003115533.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sen:SACE_2091 serine/threonine protein kinase YP_003115534.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_003115535.1 KEGG: saq:Sare_2528 hypothetical protein YP_003115536.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mhu:Mhun_2586 monovalent cation/H+ antiporter subunit D YP_003115537.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: ton:TON_0493 multisubunit Na+/H+ antiporter, MnhC subunit YP_003115538.1 KEGG: pho:PH1429 monovalent cation/H+ antiporter subunit B YP_003115539.1 KEGG: mrd:Mrad2831_0684 hypothetical protein YP_003115540.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: pab:PAB0486 monovalent cation/H+ antiporter subunit G YP_003115541.1 PFAM: multiple resistance and pH regulation protein F; KEGG: pab:PAB3177 monovalent cation/H+ antiporter subunit F YP_003115542.1 KEGG: mgm:Mmc1_2216 membrane bound protein complex subunit MbxA YP_003115544.1 KEGG: sgr:SGR_170 hypothetical protein YP_003115545.1 PFAM: protein of unknown function DUF1469; KEGG: sgr:SGR_171 integral membrane protein YP_003115546.1 PFAM: cyclase/dehydrase; hemerythrin HHE cation binding domain protein; KEGG: kra:Krad_0825 cyclase/dehydrase YP_003115547.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 4 domain protein; KEGG: sco:SCO5243 RNA polymerase sigma factor YP_003115548.1 KEGG: fra:Francci3_3754 serine/threonine kinase anti-sigma factor YP_003115550.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: kra:Krad_0483 anti-sigma-factor antagonist YP_003115552.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sen:SACE_4385 HAD family hydrolase YP_003115553.1 PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO7290 dehydrogenase YP_003115554.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: sen:SACE_5887 L-lactate dehydrogenase YP_003115555.1 PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO6495 dehydrogenase YP_003115556.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: bld:BLi00558 RsbV YP_003115557.1 KEGG: stp:Strop_2947 hypothetical protein YP_003115558.1 KEGG: sma:SAV_1685 hypothetical protein YP_003115559.1 PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; KEGG: sen:SACE_5551 pyruvate decarboxylase YP_003115560.1 PFAM: glycoside hydrolase 15-related; KEGG: mpa:MAP1384c hypothetical protein YP_003115561.1 PFAM: FAD linked oxidase; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: fra:Francci3_1983 D-lactate dehydrogenase (cytochrome) YP_003115562.1 PFAM: phosphoglycerate mutase; KEGG: dra:DR_2144 hypothetical protein YP_003115563.1 PFAM: Carotenoid oxygenase; KEGG: sen:SACE_0013 lignostilbene-alpha/beta- dioxygenase YP_003115564.1 PFAM: transcriptional regulator PadR family protein; KEGG: kra:Krad_1942 PadR-like family transcriptional regulator YP_003115565.1 KEGG: sco:SCO0595 hypothetical protein YP_003115566.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sco:SCO0789 hypothetical protein YP_003115567.1 PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO6495 dehydrogenase YP_003115568.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: sma:SAV_687 hypothetical protein YP_003115569.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aba:acid345_0726 short-chain dehydrogenase/reductase SDR YP_003115570.1 KEGG: kra:Krad_2967 hypothetical protein YP_003115571.1 KEGG: scl:sce2245 hypothetical protein YP_003115572.1 PFAM: condensation domain protein; KEGG: sgr:SGR_5180 hypothetical protein YP_003115573.1 PFAM: ricin B lectin; glycoside hydrolase family 5; SMART: ricin B lectin; KEGG: sco:SCO5932 arabinofuranosidase YP_003115574.1 PFAM: alpha-L-arabinofuranosidase B catalytic; ricin B lectin; SMART: ricin B lectin; KEGG: fungal alpha-L-arabinofuranosidase YP_003115575.1 PFAM: ricin B lectin; SMART: ricin B lectin; Parallel beta-helix repeat; KEGG: sma:SAV_1407 hypothetical protein YP_003115576.1 PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); KEGG: ote:Oter_3218 alpha-L-fucosidase YP_003115577.1 PFAM: glycoside hydrolase family 5; protein of unknown function DUF291; KEGG: bha:BH0603 endo-beta-1,4-glucanase (celulase B) YP_003115578.1 KEGG: sco:SCO4754 transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003115579.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sgr:SGR_3513 MarR family transcriptional regulator YP_003115580.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cmi:CMM_2861 acetyltransferase YP_003115581.1 PFAM: ricin B lectin; glycoside hydrolase clan GH- D; SMART: ricin B lectin; KEGG: sma:SAV_2186 secreted alpha-galactosidase YP_003115582.1 PFAM: glycoside hydrolase family 6; Fibronectin type III domain protein; cellulose-binding family II; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: sma:SAV_557 cellulose 1,4-beta-cellobiosidase YP_003115583.1 PFAM: alpha-L-arabinofuranosidase B catalytic; ricin B lectin; SMART: ricin B lectin; KEGG: fungal alpha-L-arabinofuranosidase YP_003115584.1 PFAM: glycoside hydrolase; Ig domain protein group 2 domain protein; KEGG: bfr:BF0832 beta-xylosidase YP_003115585.1 PFAM: glycoside hydrolase family 62; ricin B lectin; SMART: ricin B lectin; KEGG: sco:SCO5932 arabinofuranosidase YP_003115586.1 PFAM: aldehyde dehydrogenase; KEGG: sen:SACE_3144 benzaldehyde dehydrogenase (NAD+) YP_003115587.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_003115588.1 TIGRFAM: 3-oxoadipate enol-lactonase; 4- carboxymuconolactone decarboxylase; PFAM: carboxymuconolactone decarboxylase; alpha/beta hydrolase fold protein; KEGG: sco:SCO6697 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase YP_003115589.1 PFAM: fumarate lyase; KEGG: sco:SCO6698 3-carboxy-cis,cis-muconate cycloisomerase YP_003115590.1 TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: sma:SAV_1704 protocatechuate 3,4-dioxygenase subunit alpha YP_003115591.1 KEGG: sma:SAV_1703 protocatechuate 3,4-dioxygenase beta subunit; TIGRFAM: protocatechuate 3,4-dioxygenase subunit beta; PFAM: intradiol ring-cleavage dioxygenase YP_003115592.1 KEGG: sma:SAV_1701 3-oxoacid CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase subunit beta; PFAM: coenzyme A transferase YP_003115593.1 KEGG: sco:SCO6703 3-oxoadipate CoA-transferase subunit A; TIGRFAM: 3-oxoacid CoA-transferase, subunit alpha; PFAM: coenzyme A transferase YP_003115594.1 KEGG: sma:SAV_3701 IclR family transcriptional regulator; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR YP_003115595.1 PFAM: ferredoxin; oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: sco:SCO6678 iron-sulfur oxidoreductase subunit beta YP_003115596.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sco:SCO6680 oxidoreductase subunit alpha YP_003115597.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: sco:SCO6669 transcriptional regulator YP_003115598.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO0295 transmembrane efflux protein YP_003115599.1 KEGG: pat:Patl_1116 hypothetical protein YP_003115600.1 PFAM: PaaX domain protein domain; PaaX domain protein; KEGG: fre:Franean1_1685 PaaX family transcriptional regulator YP_003115601.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rha:RHA1_ro05124 reductase YP_003115602.1 PFAM: amidohydrolase; KEGG: rpe:RPE_4121 amidohydrolase YP_003115603.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sen:SACE_2795 feruloyl-CoA synthetase YP_003115604.1 PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro05122 nodulation protein YP_003115605.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: glycosyl hydrolase family 43 protein YP_003115606.1 PFAM: ricin B lectin; glycoside hydrolase family 62; SMART: ricin B lectin; KEGG: cja:CJA_3282 ferruloyl esterase, , fee1B YP_003115607.1 PFAM: ricin B lectin; glycoside hydrolase family 30; SMART: ricin B lectin; KEGG: aba:acid345_4153 glucosylceramidase YP_003115608.1 KEGG: kra:Krad_2134 hypothetical protein YP_003115609.1 PFAM: inositol monophosphatase; KEGG: sma:SAV_372 myo-inositol 1-monophosphatase YP_003115610.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sma:SAV_373 LysR family transcriptional regulator YP_003115611.1 PFAM: glycoside hydrolase family 59; ricin B lectin; SMART: ricin B lectin; KEGG: hypothetical protein; K01202 galactosylceramidase YP_003115612.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: sco:SCO0713 lipase (secreted protein) YP_003115613.1 PFAM: ricin B lectin; glycoside hydrolase clan GH- D; SMART: ricin B lectin; KEGG: sma:SAV_628 secreted alpha-galactosidase YP_003115614.1 PFAM: glycoside hydrolase family 12; KEGG: sco:SCO5691 hypothetical protein YP_003115615.1 PFAM: ExsB family protein; KEGG: fre:Franean1_0147 ExsB family protein YP_003115616.1 PFAM: protein of unknown function DUF111; KEGG: ade:Adeh_4313 hypothetical protein YP_003115617.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: nca:Noca_0169 circadian phase modifier CpmA YP_003115618.1 KEGG: ssp:SSP0177 hypothetical protein YP_003115619.1 PFAM: amidohydrolase; KEGG: sma:SAV_7286 hypothetical protein YP_003115620.1 PFAM: fumarylacetoacetate hydrolase; KEGG: sen:SACE_3938 2-hydroxyhepta-2,4- diene-1,7-dioate isomerase YP_003115621.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sma:SAV_7278 GntR family transcriptional regulator YP_003115622.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: sen:SACE_3937 mandelate racemase/muconate lactonizing enzyme YP_003115623.1 KEGG: sma:SAV_7279 sugar ABC transporter substrate- binding protein YP_003115624.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_7280 sugar ABC transporter ATP- binding protein YP_003115625.1 PFAM: inner-membrane translocator; KEGG: bxe:Bxe_B2962 ABC sugar transporter inner membrane subunit YP_003115626.1 KEGG: hau:Haur_1242 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003115627.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: hypothetical protein YP_003115628.1 PFAM: alpha-L-arabinofuranosidase B catalytic; ricin B lectin; SMART: ricin B lectin; KEGG: similar to alpha-L-arabinofuranosidase YP_003115629.1 PFAM: glycoside hydrolase family 10; ricin B lectin; SMART: glycoside hydrolase family 10; ricin B lectin; KEGG: ace:Acel_0180 glycoside hydrolase family protein YP_003115630.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sma:SAV_1406 GntR family transcriptional regulator YP_003115631.1 PFAM: ricin B lectin; SMART: ricin B lectin; Parallel beta-helix repeat; KEGG: cak:Caul_2405 hypothetical protein YP_003115632.1 PFAM: alpha-L-arabinofuranosidase B catalytic; ricin B lectin; SMART: ricin B lectin; KEGG: hypothetical protein YP_003115633.1 PFAM: glycoside hydrolase family 29 (alpha-L- fucosidase); ricin B lectin; KEGG: ote:Oter_3218 alpha-L-fucosidase YP_003115634.1 KEGG: sma:SAV_4983 LacI family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003115635.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sco:SCO5692 transcriptional regulator YP_003115636.1 PFAM: glycoside hydrolase family 42 domain protein; beta-galactosidase trimerisation domain protein; KEGG: sma:SAV_2573 beta-galactosidase YP_003115637.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: kra:Krad_0411 binding-protein-dependent transport systems inner membrane component YP_003115638.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO5687 transporter integral membrane protein YP_003115639.1 KEGG: tfu:Tfu_1609 ABC-type sugar transporter periplasmic component YP_003115641.1 PFAM: glycoside hydrolase; KEGG: sma:SAV_2578 sugar hydrolase YP_003115642.1 PFAM: glycoside hydrolase family 11; ricin B lectin; SMART: ricin B lectin; KEGG: sco:SCO2292 secreted endo-1,4-beta-xylanase B (xylanase B) YP_003115643.1 PFAM: TetR family transcriptional regulator; KEGG: kra:Krad_2221 TetR family transcriptional regulator YP_003115644.1 PFAM: aldo/keto reductase; KEGG: sgr:SGR_5120 aldoketoreductase YP_003115645.1 KEGG: sma:SAV_2661 hypothetical protein YP_003115646.1 PFAM: DoxX family protein; KEGG: sco:SCO2350 integral membrane protein YP_003115647.1 PFAM: glycoside hydrolase family 5; protein of unknown function DUF291; KEGG: bha:BH0603 endo-beta-1,4-glucanase (celulase B) YP_003115648.1 PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: cpy:Cphy_3023 alpha-L-fucosidase YP_003115649.1 PFAM: aldo/keto reductase; KEGG: sco:SCO0349 oxidoreductase (secreted protein) YP_003115650.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sde:Sde_2646 phosphatidylserine decarboxylase YP_003115651.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: sus:acid_2222 alcohol dehydrogenase YP_003115652.1 PFAM: protein of unknown function DUF718; KEGG: sit:TM1040_3394 hypothetical protein YP_003115653.1 KEGG: sco:SCO7164 hypothetical protein YP_003115654.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_1411 ABC transporter permease YP_003115655.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_1410 ABC transporter permease YP_003115656.1 PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_1409 solute-binding protein YP_003115657.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sma:SAV_1406 GntR family transcriptional regulator YP_003115658.1 PFAM: cellulose-binding family II; Ig family protein; glycoside hydrolase family 30; SMART: cellulose-binding family II; KEGG: hypothetical protein; K01201 glucosylceramidase YP_003115659.1 KEGG: ace:Acel_0179 PHB depolymerase family esterase; TIGRFAM: esterase, PHB depolymerase family; PFAM: ricin B lectin; SMART: ricin B lectin YP_003115660.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: cac:CA_P0117 beta-xylosidase YP_003115661.1 PFAM: Rare lipoprotein A; KEGG: fre:Franean1_5557 rare lipoprotein A YP_003115662.1 PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta- sandwich; KEGG: sma:SAV_2095 beta-galactosidase YP_003115663.1 PFAM: glycoside hydrolase family 10; Ig family protein; cellulose-binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II; KEGG: ace:Acel_0180 glycoside hydrolase family protein YP_003115664.1 KEGG: mpt:Mpe_B0343 hypothetical protein YP_003115665.1 KEGG: sgr:SGR_614 hypothetical protein YP_003115667.1 KEGG: GK13047 YP_003115668.1 KEGG: sus:acid_3219 glycosyl hydrolase YP_003115669.1 PFAM: UbiA prenyltransferase; KEGG: cau:Caur_0843 UbiA prenyltransferase YP_003115670.1 PFAM: cytochrome P450; KEGG: mmi:MMAR_0281 cytochrome P450 183B1 Cyp183B1 YP_003115671.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sgr:SGR_434 hypothetical protein YP_003115672.1 PFAM: polyprenyl synthetase; KEGG: sen:SACE_3979 dimethylallyltranstransferase / geranyltranstransferase / geranylgeranyl pyrophosphate synthetase YP_003115673.1 PFAM: alpha-L-arabinofuranosidase B catalytic; KEGG: hypothetical protein YP_003115674.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: sgr:SGR_1926 histone-like DNA- binding protein YP_003115675.1 SMART: HTTM domain protein; KEGG: sma:SAV_4162 hypothetical protein YP_003115676.1 KEGG: sma:SAV_4163 hypothetical protein YP_003115677.1 KEGG: sgr:SGR_4556 secreted protein YP_003115678.1 KEGG: sco:SCO6221 lipoprotein YP_003115679.1 KEGG: sgr:SGR_6972 hypothetical protein YP_003115680.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: sco:SCO0335 secreted protein YP_003115681.1 PFAM: polysaccharide lyase 8 alpha-helical; polysaccharide lyase family 8; polysaccharide lyase family 8 domain protein; KEGG: sgr:SGR_291 hyaluronidase YP_003115682.1 PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: atc:AGR_L_1215 hypothetical protein YP_003115683.1 KEGG: atc:AGR_L_1215 hypothetical protein YP_003115684.1 PFAM: FAD dependent oxidoreductase; KEGG: atc:AGR_L_1216 hypothetical protein YP_003115685.1 PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_1217 hypothetical protein YP_003115686.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: atc:AGR_L_1220 probable uspA protein YP_003115687.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: atc:AGR_L_1221 probable sugar transport inner membrane protein YP_003115688.1 KEGG: art:Arth_3899 hypothetical protein YP_003115689.1 PFAM: Berberine/berberine domain protein; FAD linked oxidase domain protein; KEGG: amr:AM1_A0304 hexose oxidase YP_003115690.1 PFAM: protein of unknown function DUF1680; KEGG: kra:Krad_4148 hypothetical protein YP_003115691.1 KEGG: kra:Krad_4149 periplasmic binding protein/LacI transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003115692.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: blo:BL0423 sugar permease of ABC transporter system YP_003115693.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rle:RL4376 transmembrane component of ABC transporter YP_003115694.1 PFAM: extracellular solute-binding protein family 1; KEGG: blo:BL0425 solute binding protein of ABC transporter system YP_003115695.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: sma:SAV_5741 IclR family transcriptional regulator YP_003115696.1 PFAM: ricin B lectin; Ig family protein; SMART: ricin B lectin; KEGG: bpd:BURPS668_A2317 heme utilization/adhesion protein YP_003115697.1 PFAM: protein of unknown function DUF1680; SMART: LamG domain protein jellyroll fold domain protein; KEGG: sma:SAV_1144 secreted protein YP_003115698.1 KEGG: scl:sce3317 HTH-type transcriptional repressor PurR; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003115699.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: kra:Krad_2209 alcohol dehydrogenase YP_003115700.1 SMART: helix-turn-helix domain protein; KEGG: mva:Mvan_1062 XRE family transcriptional regulator YP_003115701.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mjl:Mjls_1182 MarR family transcriptional regulator YP_003115702.1 KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_003115703.1 PFAM: carbohydrate binding family 6; KEGG: sma:SAV_1077 melibiase YP_003115704.1 PFAM: cupin; KEGG: msm:MSMEG_1754 hypothetical protein YP_003115705.1 KEGG: rha:RHA1_ro04493 hypothetical protein YP_003115706.1 PFAM: TetR family transcriptional regulator; KEGG: bad:BAD_1210 TetR-type transcriptional regulator YP_003115707.1 PFAM: glycoside hydrolase family 5; ricin B lectin; SMART: ricin B lectin; KEGG: cac:CAC0826 endoglucanase family protein 5 YP_003115708.1 KEGG: sma:SAV_1475 alpha-galactosidase; PFAM: coagulation factor 5/8 type domain protein; glycosyl hydrolase family 98 carbohydrate binding module; glycoside hydrolase clan GH-D; SMART: glycosyl hydrolase family 98 carbohydrate binding module YP_003115709.1 PFAM: inner-membrane translocator; KEGG: mlo:mll7080 ribose ABC transporter permease YP_003115710.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mlo:mll7081 ribose ABC transporter ATP- binding protein YP_003115711.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mll7082 L-arabinose-binding protein YP_003115712.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tfu:Tfu_1784 oxidoreductase YP_003115713.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: tfu:Tfu_1785 GntR family transcriptional regulator YP_003115714.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: tfu:Tfu_1786 galactonate dehydratase YP_003115715.1 KEGG: hypothetical protein YP_003115716.1 PFAM: KDPG and KHG aldolase; KEGG: sco:SCO0852 aldolase YP_003115717.1 PFAM: PfkB domain protein; KEGG: ace:Acel_1214 ribokinase-like domain- containing protein YP_003115718.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: fra:Francci3_2731 alcohol dehydrogenase GroES- like protein YP_003115719.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sco:SCO7639 MarR family regulatory protein YP_003115720.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_003115721.1 PFAM: molybdopterin oxidoreductase; flavodoxin/nitric oxide synthase; molybdopterin oxidoreductase Fe4S4 region; FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; molydopterin dinucleotide-binding region; KEGG: sgr:SGR_6233 assimilatory nitrate reductase large subunit YP_003115722.1 KEGG: tfu:Tfu_1726 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_003115723.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: stp:Strop_2703 alkylhydroperoxidase YP_003115725.1 PFAM: glycoside hydrolase family 38; KEGG: sco:SCO0069 hypothetical protein YP_003115726.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: vei:Veis_4549 binding-protein-dependent transport systems inner membrane component YP_003115727.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: vei:Veis_4548 binding-protein-dependent transport systems inner membrane component YP_003115728.1 PFAM: extracellular solute-binding protein family 1; KEGG: vei:Veis_4547 extracellular solute-binding protein, family 1 YP_003115729.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sma:SAV_1477 LacI family transcriptional regulator YP_003115730.1 KEGG: bfs:BF0474 hypothetical protein YP_003115731.1 PFAM: X-Pro dipeptidyl-peptidase domain protein; peptidase S15; KEGG: rxy:Rxyl_2359 X-Pro dipeptidyl-peptidase-like protein YP_003115732.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: fre:Franean1_3529 LysR family transcriptional regulator YP_003115733.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: syf:Synpcc7942_1160 hypothetical protein YP_003115734.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: cma:Cmaq_0463 hypothetical protein YP_003115735.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; ATPase AAA; KEGG: rca:Rcas_4327 ATP-dependent transcription regulator LuxR YP_003115736.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL5599 short chain oxidoreductase YP_003115740.1 PFAM: transcriptional activator domain; TPR repeat- containing protein; NB-ARC domain protein; transcriptional regulator domain protein; SMART: hypothetical protein; KEGG: saq:Sare_3671 SARP family transcriptional regulator YP_003115741.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: sgr:SGR_4885 aminopeptidase N YP_003115742.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: rsa:RSal33209_1319 O-succinylbenzoate synthase YP_003115743.1 PFAM: glycoside hydrolase; carbohydrate binding family 6; Ig family protein; coagulation factor 5/8 type domain protein; SMART: coagulation factor 5/8 type domain protein; cellulose binding type IV; KEGG: hypothetical protein; K05349 beta- glucosidase YP_003115744.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: mav:MAV_2990 oxidoreductase YP_003115745.1 KEGG: sma:SAV_6085 hypothetical protein YP_003115746.1 PFAM: regulatory protein LuxR; TrmB family transcriptional regulator; SMART: regulatory protein LuxR; KEGG: sma:SAV_86 erythropoiesis-stimulating protein YP_003115749.1 KEGG: predicted gene, 100042205 YP_003115750.1 PFAM: CHAP domain containing protein; KEGG: xca:xccb100_0537 ice nucleation protein YP_003115751.1 KEGG: bcj:BCAM2143 cable pilus associated adhesin protein YP_003115752.1 PFAM: transcriptional activator domain; TPR repeat- containing protein; hypothetical protein; NB-ARC domain protein; transcriptional regulator; SMART: Tetratricopeptide domain protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator YP_003115753.1 PFAM: protein of unknown function DUF574; KEGG: sco:SCO0525 hypothetical protein YP_003115754.1 SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_1293 helix-turn-helix domain- containing protein YP_003115755.1 KEGG: sco:SCO0762 protease inhibitor protein YP_003115757.1 PFAM: UspA domain protein; KEGG: sco:SCO7299 stress-inducible protein YP_003115758.1 KEGG: sen:SACE_5338 small-conductance mechanosensitive channel protein YP_003115759.1 PFAM: TetR family transcriptional regulator; KEGG: pol:Bpro_5182 TetR family transcriptional regulator YP_003115760.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: amr:AM1_4173 redoxin domain-containing protein YP_003115761.1 PFAM: alpha/beta hydrolase fold protein-3 domain protein; KEGG: sgr:SGR_770 lipase YP_003115762.1 PFAM: methyltransferase type 11; cyclopropane-fatty- acyl-phospholipid synthase; methyltransferase type 12; KEGG: mca:MCA3003 UbiE/COQ5 family methlytransferase YP_003115763.1 PFAM: cupin; KEGG: mjl:Mjls_4505 cupin 2 domain-containing protein YP_003115764.1 TIGRFAM:1D-myo-inosityl-2-acetamido-2-deoxy-alpha- D- glucopyranosidedeacetylase; PFAM: LmbE family protein; KEGG: sgr:SGR_2405 N-acetyl-1-D-myo- inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase YP_003115765.1 PFAM: MbtH domain protein; KEGG: stp:Strop_4421 MbtH domain-containing protein YP_003115766.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: rha:RHA1_ro06103 non-ribosomal peptide synthetase YP_003115768.1 PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; KEGG: sco:SCO1268 acyltransferase YP_003115769.1 PFAM: transketolase; KEGG: npu:Npun_F3161 transketolase, central region YP_003115770.1 PFAM: dehydrogenase E1 component; KEGG: sco:SCO1270 pyruvate dehydrogenase subunit alpha YP_003115771.1 PFAM: phosphopantetheine-binding; condensation domain protein; KEGG: psb:Psyr_2608 amino acid adenylation YP_003115772.1 PFAM: AMP-dependent synthetase and ligase; KEGG: gka:GK2782 long-chain fatty-acid-CoA ligase YP_003115773.1 PFAM: condensation domain protein; KEGG: mbb:BCG_2394c peptide synthetase MbtE YP_003115774.1 KEGG: cms:CMS_3016 tyrosine-protein phosphatase YP_003115775.1 TIGRFAM: UDP-N-acetylglucosamine; PFAM: glycosyl transferase group 1; KEGG: tfu:Tfu_2913 glycosyltransferase YP_003115776.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; thioesterase; major facilitator superfamily MFS_1; phosphopantetheine-binding; condensation domain protein; KEGG: hau:Haur_3129 amino acid adenylation domain- containing protein YP_003115777.1 KEGG: hypothetical protein YP_003115778.1 KEGG: ace:Acel_1933 hypothetical protein YP_003115779.1 KEGG: similar to hCG2041257 YP_003115780.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: nfa:nfa48920 hypothetical protein YP_003115781.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ret:RHE_CH02450 short chain dehydrogenase YP_003115782.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: bbr:BB3316 LysR family transcriptional regulator YP_003115783.1 PFAM: alpha/beta hydrolase fold protein; KEGG: mmi:MMAR_0385 hypothetical protein YP_003115784.1 PFAM: TetR family transcriptional regulator; KEGG: nfa:nfa26380 transcriptional regulator YP_003115785.1 KEGG: sma:SAV_74 hypothetical protein YP_003115786.1 KEGG: fra:Francci3_4460 polyhydroxybutyrate depolymerase YP_003115788.1 KEGG: hypothetical protein YP_003115789.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mgi:Mflv_4243 integral membrane sensor signal transduction histidine kinase YP_003115790.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: ace:Acel_1595 two component transcriptional regulator YP_003115791.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: hau:Haur_4574 ricin B lectin YP_003115792.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sma:SAV_729 LysR family transcriptional regulator YP_003115793.1 PFAM: NmrA family protein; KEGG: sma:SAV_730 hypothetical protein YP_003115794.1 KEGG: sco:SCO7593 hypothetical protein YP_003115795.1 initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione YP_003115796.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sgr:SGR_3020 serine/threonine protein kinase YP_003115797.1 PFAM: aldo/keto reductase; KEGG: sen:SACE_3934 oxidoreductase YP_003115798.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cms:CMS_2575 integral membrane transport protein YP_003115799.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cms:CMS_2574 integral membrane transport protein YP_003115800.1 PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_1326 solute-binding lipoprotein YP_003115801.1 PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_4519 benzaldehyde dehydrogenase (NAD+) YP_003115802.1 KEGG: sco:SCO0359 hypothetical protein YP_003115804.1 KEGG: aba:acid345_1711 hypothetical protein YP_003115805.1 PFAM: ROK family protein; KEGG: sco:SCO0794 transcriptional regulator YP_003115806.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: pto:PTO0187 membrane associated serine protease YP_003115807.1 KEGG: cvi:CV_0909 non-hemolytic phospholipase C precursor; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756 YP_003115808.1 PFAM: B3/4 domain protein; KEGG: rle:RL3394 hypothetical protein YP_003115809.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dsh:Dshi_3490 ABC transporter YP_003115810.1 PFAM: protein of unknown function DUF574; KEGG: sma:SAV_2177 hypothetical protein YP_003115811.1 KEGG: sco:SCO6381 lipoprotein YP_003115812.1 PFAM: activator of Hsp90 ATPase 1 family protein; ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: aau:AAur_1126 ArsR family transcriptional regulator YP_003115813.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro02544 hypothetical protein YP_003115814.1 PFAM: protein of unknown function DUF427; KEGG: ava:Ava_2662 hypothetical protein YP_003115816.1 KEGG: art:Arth_0341 polysaccharide deacetylase YP_003115817.1 KEGG: DGKK; diacylglycerol kinase, kappa YP_003115818.1 PFAM: aldo/keto reductase; KEGG: sco:SCO0429 oxidoreductase YP_003115819.1 PFAM: TetR family transcriptional regulator; KEGG: fal:FRAAL3849 TetR family transcriptional regulator YP_003115820.1 PFAM: DoxX family protein; KEGG: sgr:SGR_824 hypothetical protein YP_003115821.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: rme:Rmet_3602 MerR family transcriptional regulator YP_003115823.1 PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sco:SCO4774 glycerol phosphate dehydrogenase YP_003115824.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_003115825.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: sma:SAV_7200 transport integral membrane protein YP_003115826.1 PFAM: transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: saq:Sare_4608 IclR family transcriptional regulator YP_003115827.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: stp:Strop_0497 glycerol kinase YP_003115828.1 PFAM: isochorismatase hydrolase; KEGG: mlo:mlr4509 hypothetical protein YP_003115829.1 KEGG: ace:Acel_0162 hypothetical protein YP_003115830.1 PFAM: alpha/beta hydrolase fold protein-3 domain protein; KEGG: nar:Saro_1585 dienelactone hydrolase YP_003115831.1 PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_3988 major facilitator transporter YP_003115832.1 PFAM: TetR family transcriptional regulator; KEGG: mva:Mvan_4572 TetR family transcriptional regulator YP_003115834.1 KEGG: CG8405 YP_003115835.1 KEGG: sco:SCO4697 integral membrane protein YP_003115837.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sco:SCO7095 hydrolase YP_003115838.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sth:STH2902 RNA polymerase ECF-type sigma factor variant YP_003115839.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_5831 multidrug-efflux transporter YP_003115840.1 KEGG: rha:RHA1_ro00637 hypothetical protein YP_003115841.1 KEGG: sco:SCO7137 regulatory protein YP_003115842.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: fre:Franean1_6795 LuxR family transcriptional regulator YP_003115843.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: msm:MSMEG_3290 regulatory protein YP_003115844.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: mva:Mvan_5002 regulatory protein, LuxR YP_003115845.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rha:RHA1_ro00997 short chain dehydrogenase YP_003115846.1 PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: mes:Meso_3901 short-chain dehydrogenase/reductase SDR YP_003115847.1 PFAM: hypothetical protein; NAD- dependent epimerase/dehydratase; KEGG: sco:SCO2190 hypothetical protein YP_003115849.1 KEGG: sco:SCO4516 hypothetical protein YP_003115850.1 KEGG: rha:RHA1_ro02916 hypothetical protein YP_003115851.1 KEGG: glo:Glov_1454 cell surface receptor IPT/TIG domain protein YP_003115852.1 PFAM: inositol monophosphatase; KEGG: saq:Sare_4101 histidinol-phosphate phosphatase YP_003115853.1 PFAM: aminoglycoside phosphotransferase; KEGG: mab:MAB_4837c phosphotransferase YP_003115854.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV_6359 hypothetical protein YP_003115855.1 KEGG: sgr:SGR_5618 alanine-rich protein YP_003115856.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: msm:MSMEG_6132 glucarate dehydratase YP_003115857.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate YP_003115858.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: sma:SAV_7535 hydrolase YP_003115859.1 KEGG: npu:Npun_F3678 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein YP_003115860.1 PFAM: alpha-L-arabinofuranosidase B catalytic; alpha-L-arabinofuranosidase B; KEGG: fungal alpha-L-arabinofuranosidase YP_003115861.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa37290 hypothetical protein YP_003115862.1 KEGG: sco:SCO3065 hypothetical protein YP_003115863.1 PFAM: beta-lactamase; KEGG: saq:Sare_1418 beta-lactamase YP_003115864.1 KEGG: sus:acid_2784 hypothetical protein YP_003115865.1 PFAM: stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; KEGG: sgr:SGR_3521 hypothetical protein YP_003115866.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: bmn:BMA10247_0632 lipoprotein YP_003115867.1 PFAM: K potassium transporter; KEGG: fre:Franean1_4647 K potassium transporter YP_003115868.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: sco:SCO0841 oxidoreductase YP_003115869.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: sma:SAV_1213 oxidoreductase YP_003115870.1 KEGG: sma:SAV_6898 hypothetical protein YP_003115871.1 KEGG: sus:acid_0854 daunorubicin resistance ABC transporter ATPase; TIGRFAM: daunorubicin resistance ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003115872.1 PFAM: ABC transporter; KEGG: aoe:Clos_1091 ABC-2 type transporter YP_003115873.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_243 acetyltransferase YP_003115875.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sgr:SGR_6518 aldolase YP_003115876.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sco:SCO1088 oxidoreductase YP_003115877.1 KEGG: art:Arth_1660 hypothetical protein YP_003115878.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: fre:Franean1_2863 alcohol dehydrogenase YP_003115879.1 PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sma:SAV_3832 AraC family transcription regulator YP_003115880.1 KEGG: fre:Franean1_0699 hypothetical protein YP_003115881.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: sgr:SGR_5916 ABC-type multidrug transporter ATPase and permease YP_003115882.1 PFAM: ABC transporter; ABC transporter transmembrane region; KEGG: sgr:SGR_5915 ABC-type multidrug transport system ATPase and permease YP_003115883.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sgr:SGR_1525 sensor-like histidine kinase YP_003115884.1 PFAM: Roadblock/LC7 family protein; KEGG: saq:Sare_0761 roadblock/LC7 family protein YP_003115885.1 PFAM: protein of unknown function ATP binding; KEGG: saq:Sare_4263 protein of unknown function ATP binding YP_003115886.1 PFAM: extracellular ligand-binding receptor; KEGG: sgr:SGR_1527 branched-chain amino acid ABC transporter substrate-binding protein YP_003115887.1 PFAM: monooxygenase FAD-binding; KEGG: sgr:SGR_1531 monooxygenase YP_003115888.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_003115889.1 PFAM: DSBA oxidoreductase; KEGG: saq:Sare_0436 tetratricopeptide domain- containing protein YP_003115890.1 PFAM: protein of unknown function DUF541; KEGG: sma:SAV_6216 hypothetical protein YP_003115891.1 PFAM: protein of unknown function DUF156; KEGG: nfa:nfa8420 hypothetical protein YP_003115892.1 KEGG: sgr:SGR_2303 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_003115893.1 PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: ace:Acel_2135 glycosyl transferase family protein YP_003115894.1 TIGRFAM: high-affinity nickel-transporter; PFAM: high-affinity nickel-transporter; KEGG: sma:SAV_560 high-affinity nickel-transporter YP_003115895.1 KEGG: sco:SCO1317 hypothetical protein YP_003115896.1 PFAM: thioesterase superfamily protein; KEGG: rha:RHA1_ro01944 phenylacetic acid degradation protein YP_003115897.1 PFAM: TetR family transcriptional regulator; KEGG: nfa:nfa1170 transcriptional regulator YP_003115898.1 KEGG: sgr:SGR_4761 hypothetical protein YP_003115899.1 PFAM: Queuosine biosynthesis protein; KEGG: rxy:Rxyl_2617 S- adenosylmethionine:tRNA ribosyltransferase-isomerase YP_003115900.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rha:RHA1_ro00215 short chain dehydrogenase YP_003115901.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: GAF domain protein; ATP-binding region ATPase domain protein; KEGG: sma:SAV_6476 two-component system sensor kinase YP_003115902.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO1801 two component response regulator YP_003115903.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: sma:SAV_4798 hypothetical protein YP_003115904.1 PFAM: dienelactone hydrolase; KEGG: sen:SACE_4437 hydrolase YP_003115905.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rpd:RPD_0540 GCN5-related N-acetyltransferase YP_003115906.1 PFAM: acyltransferase 3; KEGG: rxy:Rxyl_2066 acyltransferase 3 YP_003115907.1 KEGG: nfa:pnf2600 recombinase YP_003115908.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: sma:SAV_7030 transmembrane efflux protein YP_003115909.1 KEGG: CACNA1B; calcium channel, voltage-dependent, N type, alpha 1subunit beta; K04849 calcium channel, voltage-dependent, N type, alpha 1subunit beta YP_003115910.1 PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase; KEGG: fra:Francci3_1128 protein-L-isoaspartate(D- aspartate) O-methyltransferase YP_003115911.1 KEGG: sma:SAV_1698 hypothetical protein YP_003115912.1 KEGG: tfu:Tfu_2334 hypothetical protein YP_003115913.1 KEGG: nca:Noca_2941 hypothetical protein YP_003115914.1 TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mjl:Mjls_3548 NAD synthetase YP_003115915.1 PFAM: UspA domain protein; KEGG: saq:Sare_1532 UspA domain-containing protein YP_003115916.1 PFAM: helix-turn-helix HxlR type; KEGG: bpt:Bpet0599 transcriptional regulator YP_003115917.1 KEGG: mva:Mvan_3378 hypothetical protein YP_003115918.1 PFAM: lipolytic protein G-D-S-L family; KEGG: bpy:Bphyt_4719 lipolytic protein G-D-S-L family YP_003115919.1 KEGG: sus:acid_0535 hypothetical protein YP_003115920.1 KEGG: cma:Cmaq_0463 hypothetical protein YP_003115921.1 PFAM: glycoside hydrolase; Ig domain protein group 2 domain protein; KEGG: ote:Oter_3219 beta-glucosidase YP_003115922.1 PFAM: ROK family protein; KEGG: nca:Noca_3264 ROK family protein YP_003115923.1 PFAM: alpha-L-arabinofuranosidase B catalytic; ricin B lectin; SMART: ricin B lectin; KEGG: hypothetical protein YP_003115924.1 PFAM: carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: hypothetical protein YP_003115925.1 PFAM: glycoside hydrolase family 76; KEGG: sma:SAV_627 glycosyl hydrolase YP_003115926.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: sma:SAV_6242 hypothetical protein YP_003115927.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sal:Sala_0877 short-chain dehydrogenase/reductase SDR YP_003115928.1 KEGG: sma:SAV_3239 hypothetical protein YP_003115929.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: rxy:Rxyl_0372 short chain enoyl-CoA hydratase YP_003115930.1 KEGG: stp:Strop_1222 transketolase domain- containing protein YP_003115931.1 KEGG: mmi:MMAR_1116 hypothetical protein YP_003115932.1 KEGG: sco:SCO7257 secreted protein YP_003115933.1 KEGG: sgr:SGR_5828 chaplin YP_003115934.1 PFAM: thioesterase superfamily protein; KEGG: sgr:SGR_6610 hypothetical protein YP_003115935.1 PFAM: NIPSNAP family containing protein; KEGG: asa:ASA_0977 hypothetical protein YP_003115936.1 KEGG: sma:SAV_1567 hypothetical protein YP_003115937.1 KEGG: cja:CJA_2710 alpha-L-fucosidase, , afc95A YP_003115938.1 PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0585 major facilitator transporter YP_003115939.1 PFAM: N-acetyltransferase; KEGG: sma:SAV_5556 N-hydroxyarylamine O- acetyltransferase YP_003115940.1 KEGG: saq:Sare_3466 error-prone DNA polymerase; TIGRFAM: DNA polymerase III subunit alpha; PFAM: DNA polymerase III subunit alpha; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_003115941.1 KEGG: stp:Strop_3240 hypothetical protein YP_003115942.1 KEGG: saq:Sare_3468 hypothetical protein YP_003115943.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sgr:SGR_502 oxidoreductase YP_003115945.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: sma:SAV_992 ribonuclease BN family membrane protein YP_003115946.1 KEGG: sgr:SGR_5190 hypothetical protein YP_003115947.1 KEGG: fal:FRAAL6052 hypothetical protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; SMART: Ku domain protein YP_003115948.1 TIGRFAM: DNA polymerase LigD, ligase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: mva:Mvan_4915 ATP-dependent DNA ligase YP_003115949.1 TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: fal:FRAAL6053 hypothetical protein YP_003115950.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: ttj:TTHA1509 hydrolase YP_003115951.1 KEGG: hau:Haur_1704 hypothetical protein YP_003115952.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mva:Mvan_1549 NADH:flavin oxidoreductase/NADH oxidase YP_003115953.1 PFAM: NAD-dependent epimerase/dehydratase; short- chain dehydrogenase/reductase SDR; KEGG: rha:RHA1_ro06351 reductase YP_003115954.1 KEGG: fal:FRAAL2174 transcriptional regulator YP_003115955.1 KEGG: stp:Strop_2771 hypothetical protein YP_003115956.1 PFAM: ROK family protein; iron dependent repressor; KEGG: sma:SAV_1222 transcriptional regulator YP_003115957.1 KEGG: mva:Mvan_0653 GtrA family protein YP_003115958.1 PFAM: glycoside hydrolase family 9; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: sco:SCO7583 secreted hydrolase YP_003115960.1 PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold protein; KEGG: bpy:Bphyt_5343 epoxide hydrolase domain protein YP_003115961.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sgr:SGR_993 fatty acid oxidation complex alpha-subunit YP_003115962.1 KEGG: sgr:SGR_994 acyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase YP_003115963.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: rha:RHA1_ro07119 acyl-CoA dehydrogenase YP_003115964.1 PFAM: TetR family transcriptional regulator; KEGG: rha:RHA1_ro03010 transcriptional regulator YP_003115965.1 PFAM: amino acid permease-associated region; KEGG: fal:FRAAL2998 amino acid/polyamine transporter YP_003115966.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: saq:Sare_4844 phosphoenolpyruvate-protein phosphotransferase YP_003115967.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: saq:Sare_4845 phosphotransferase system, phosphocarrier protein HPr YP_003115968.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: saq:Sare_4846 alcohol dehydrogenase YP_003115969.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: saq:Sare_4847 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 YP_003115970.1 PFAM: phosphotransferase system lactose/cellobiose- specific IIsubunit beta; KEGG: fre:Franean1_7072 phosphotransferase system lactose/cellobiose-specific IIsubunit beta YP_003115971.1 KEGG: fre:Franean1_7073 PTS system, mannitol- specific IIC subunit; TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphotransferase system EIIC YP_003115972.1 KEGG: fre:Franean1_7074 ribokinase-like domain- containing protein; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_003115973.1 PFAM: DeoR family transcriptional regulator; SMART: DeoR family transcriptional regulator; KEGG: fre:Franean1_7075 DeoR family transcriptional regulator YP_003115974.1 PFAM: alpha-L-rhamnosidase; Amylo-alpha-16- glucosidase; KEGG: hypothetical protein YP_003115975.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_7416 ABC transporter ATP-binding protein YP_003115976.1 PFAM: inner-membrane translocator; KEGG: sma:SAV_7417 ABC transporter permease YP_003115977.1 PFAM: inner-membrane translocator; KEGG: sco:SCO0809 ABC transporter permease YP_003115978.1 TIGRFAM: rhamnose ABC transporter periplasmic rhamnose-binding protein; KEGG: sma:SAV_7419 secreted solute-binding lipoprotein YP_003115979.1 KEGG: glo:Glov_2584 hypothetical protein YP_003115980.1 PFAM: transcriptional activator domain; NB-ARC domain protein; transcriptional regulator; KEGG: sma:SAV_3804 transcriptional regulator YP_003115981.1 PFAM: peptidase S53 propeptide; cell wall binding repeat 2-containing protein; peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sma:SAV_5949 serine protease YP_003115982.1 PFAM: cytochrome P450; KEGG: sma:SAV_1308 cytochrome P450 hydroxylase YP_003115983.1 KEGG: eba:p1D12 weak: Alr7543 protein YP_003115984.1 PFAM: TetR family transcriptional regulator; KEGG: lbf:LBF_2359 transcriptional regulator, AcrR- family YP_003115985.1 PFAM: major facilitator superfamily MFS_1; general substrate transporter; KEGG: sgr:SGR_5165 major facilitator superfamily permease YP_003115986.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bpy:Bphyt_4196 D-isomer specific 2- hydroxyacid dehydrogenase NAD-binding YP_003115988.1 PFAM: ribonuclease BN; KEGG: ace:Acel_1654 ribonuclease BN YP_003115989.1 PFAM: glycosyl transferase group 1; KEGG: fre:Franean1_0542 glycosyl transferase group 1 YP_003115991.1 KEGG: stp:Strop_2947 hypothetical protein YP_003115992.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: kra:Krad_0483 anti-sigma-factor antagonist YP_003115993.1 KEGG: dhkE; HisK family protein kinase YP_003115994.1 molecular chaperone YP_003115995.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pla:Plav_0763 MarR family transcriptional regulator YP_003115996.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: fal:FRAAL1741 ABC transporter ATP- binding protein YP_003115997.1 TIGRFAM: uracil-DNA glycosylase; PFAM: uracil-DNA glycosylase superfamily; KEGG: scl:sce4747 uracil-DNA glycosylase YP_003115998.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ace:Acel_1409 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_003115999.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: sen:SACE_6998 RNA polymerase sigma factor YP_003116000.1 KEGG: stp:Strop_3038 hypothetical protein YP_003116001.1 PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: stp:Strop_3041 tetratricopeptide TPR_4 YP_003116002.1 KEGG: nca:Noca_0473 hypothetical protein YP_003116003.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_003116004.1 KEGG: nfa:nfa28310 hypothetical protein YP_003116005.1 KEGG: fal:FRAAL5529 chorismate synthase YP_003116006.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sen:SACE_1408 AraC family transcription regulator YP_003116007.1 KEGG: sma:SAV_2496 hypothetical protein YP_003116008.1 PFAM: Luciferase-like monooxygenase; KEGG: cau:Caur_2833 luciferase family protein YP_003116009.1 KEGG: sgr:SGR_5829 secreted protein YP_003116010.1 KEGG: mjl:Mjls_2065 translation initiation factor IF-2 YP_003116011.1 PFAM: stage II sporulation E family protein; GAF domain protein; ATP-binding region ATPase domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; KEGG: sco:SCO7354 hypothetical protein YP_003116012.1 KEGG: mba:Mbar_A3123 hypothetical protein YP_003116014.1 KEGG: sma:SAV_658 hypothetical protein YP_003116015.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sgr:SGR_6113 phosphodiesterase YP_003116016.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO1420 integral membrane protein YP_003116017.1 KEGG: sgr:SGR_6111 hypothetical protein YP_003116018.1 PFAM: glycosyl transferase family 2; KEGG: sco:SCO1423 glycosyl transferase YP_003116019.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ace:Acel_1210 apolipoprotein N- acyltransferase YP_003116020.1 PFAM: amidohydrolase; KEGG: sma:SAV_6922 hypothetical protein YP_003116021.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: sma:SAV_6921 transcription regulator AsnC YP_003116022.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sma:SAV_79 hypothetical protein YP_003116023.1 KEGG: sco:SCO2678 hypothetical protein YP_003116025.1 KEGG: fal:FRAAL1158 hypothetical protein YP_003116026.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: sma:SAV_6919 acyl-CoA dehydrogenase YP_003116027.1 PFAM: peptidase M24; creatinase; KEGG: saq:Sare_2376 peptidase M24 YP_003116028.1 KEGG: cmi:CMM_0192 hypothetical protein YP_003116029.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO6123 quinone binding protein YP_003116030.1 PFAM: extracellular solute-binding protein family 1; KEGG: sgr:SGR_3212 sugar ABC transporter substrate-binding protein YP_003116031.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO2796 cellobiose transport permease YP_003116032.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sgr:SGR_3214 sugar ABC transporter permease protein YP_003116033.1 KEGG: sco:SCO7558 beta-glucosidase; TIGRFAM: beta-galactosidase; PFAM: glycoside hydrolase family 1 YP_003116034.1 KEGG: fre:Franean1_5463 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003116035.1 KEGG: stp:Strop_0640 hypothetical protein YP_003116036.1 PFAM: ROK family protein; KEGG: rxy:Rxyl_0399 ROK domain containing protein YP_003116037.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: smt:Smal_1047 oxidoreductase domain protein YP_003116038.1 PFAM: xylose isomerase; KEGG: sen:SACE_3256 sugar phosphate isomerase/epimerase YP_003116039.1 PFAM: xylose isomerase; KEGG: kra:Krad_3722 xylose isomerase domain- containing protein YP_003116040.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: aau:AAur_0717 NADH-dependent dehydrogenase YP_003116041.1 PFAM: TetR family transcriptional regulator; KEGG: scl:sce4859 TetR family transcriptional regulator YP_003116042.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_003116043.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_003116044.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and subunit alphas YP_003116045.1 KEGG: sco:SCO1479 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region YP_003116046.1 KEGG: sma:SAV_6870 hypothetical protein YP_003116047.1 PFAM: protein of unknown function zinc metallopeptidase KEGG: sgr:SGR_5652 metalloprotease YP_003116048.1 SMART: von Willebrand factor type A; KEGG: tfu:Tfu_2266 von Willebrand factor, type A YP_003116049.1 KEGG: LOC657478; similar to CG9915-PA YP_003116050.1 KEGG: fra:Francci3_0894 hypothetical protein YP_003116051.1 PFAM: protein of unknown function DUF35; 3-Oxoacyl- [acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: mav:MAV_5080 hypothetical protein YP_003116052.1 KEGG: mav:MAV_5079 thiolase YP_003116053.1 PFAM: regulatory protein MerR; transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: stp:Strop_3322 regulatory protein, MerR YP_003116054.1 PFAM: aldo/keto reductase; KEGG: tfu:Tfu_1385 oxidoreductase YP_003116055.1 PFAM: transcriptional activator domain; NB-ARC domain protein; transcriptional regulator; SMART: Tetratricopeptide domain protein; KEGG: sma:SAV_3804 transcriptional regulator YP_003116056.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: swi:Swit_1850 acyl-CoA dehydrogenase domain- containing protein YP_003116057.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ank:AnaeK_1527 L-carnitine dehydratase/bile acid-inducible protein F YP_003116058.1 KEGG: swi:Swit_1852 hypothetical protein YP_003116059.1 PFAM: MaoC domain protein dehydratase; KEGG: swi:Swit_1853 hypothetical protein YP_003116060.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: fal:FRAAL3134 acyl-CoA dehydrogenase YP_003116061.1 PFAM: protein of unknown function DUF574; KEGG: fal:FRAAL0617 hypothetical protein YP_003116062.1 PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_1162 major facilitator transporter YP_003116063.1 TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; dihydropteroate synthase DHPS; Vitamin B12 dependent methionine synthase activation region; KEGG: sma:SAV_6667 5- methyltetrahydrofolate:homocysteine S-methyltransferase YP_003116064.1 KEGG: pvi:Cvib_0935 30S ribosomal protein S16 YP_003116065.1 KEGG: hypothetical protein YP_003116066.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cmi:CMM_2820 Cro/CI family transcriptional regulator YP_003116067.1 KEGG: nca:Noca_1958 cytochrome C assembly protein YP_003116068.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: sco:SCO7250 hypothetical protein YP_003116069.1 PFAM: DeoR family transcriptional regulator; SMART: DeoR family transcriptional regulator; KEGG: sth:STH793 DeoR family transcriptional regulator YP_003116070.1 PFAM: extracellular solute-binding protein family 5; KEGG: sgr:SGR_1798 oligopeptide ABC transporter substrate-binding protein YP_003116071.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sen:SACE_2194 peptide transporter permease YP_003116072.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO5714 peptide transport permease YP_003116073.1 KEGG: sgr:SGR_1801 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: peptide ABC transporter ATPase subunit; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003116074.1 KEGG: sco:SCO5712 ABC transporter ATP-binding protein; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003116075.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: sen:SACE_0495 ATPase, BadF/BadG/BcrA/BcrD type YP_003116076.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: sen:SACE_0495 ATPase, BadF/BadG/BcrA/BcrD type YP_003116077.1 KEGG: sco:SCO5286 secreted hydrolase; PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25 YP_003116078.1 KEGG: e_gww2.7.585.1; K01238; PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25 YP_003116079.1 KEGG: bid:Bind_0259 3-carboxymuconate cyclase YP_003116080.1 KEGG: sma:SAV_3034 hypothetical protein YP_003116081.1 KEGG: sma:SAV_4435 hypothetical protein YP_003116082.1 KEGG: cch:Cag_1504 hypothetical protein YP_003116084.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: fal:FRAAL2565 polyketide oxygenase/hydroxylase YP_003116085.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_3980 TetR family transcriptional regulator YP_003116086.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: nfa:nfa23710 hypothetical protein YP_003116087.1 PFAM: glycosyl hydrolase family 88; KEGG: bha:BH0485 hypothetical protein YP_003116088.1 PFAM: regulatory protein IclR; transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: fra:Francci3_2012 IclR family transcriptional regulator YP_003116089.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rha:RHA1_ro05787 AraC family transcriptional regulator YP_003116090.1 PFAM: protein of unknown function DUF336; KEGG: sco:SCO2848 hypothetical protein YP_003116091.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: ace:Acel_1594 periplasmic sensor signal transduction histidine kinase YP_003116092.1 KEGG: sgr:SGR_4425 hypothetical protein YP_003116094.1 KEGG: sco:SCO4697 integral membrane protein YP_003116096.1 PFAM: protein of unknown function DUF75; KEGG: sco:SCO1662 hypothetical protein YP_003116097.1 PFAM: helix-turn-helix HxlR type; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rec:RHECIAT_CH0002173 probable transcriptional regulator protein YP_003116098.1 PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_1471 major facilitator transporter YP_003116099.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_003116100.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_1198 hypothetical protein YP_003116101.1 KEGG: sco:SCO1664 hypothetical protein YP_003116102.1 KEGG: sma:SAV_6645 hypothetical protein YP_003116103.1 PFAM: phosphoglycerate mutase; KEGG: kra:Krad_1833 phosphoglycerate mutase YP_003116104.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: sgr:SGR_5836 ion transporter YP_003116105.1 PFAM: methyltransferase small; KEGG: sma:SAV_1444 ribosomal RNA small subunit methyltransferase YP_003116106.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: rsa:RSal33209_0092 spectinomycin-efflux protein YP_003116107.1 KEGG: msm:MSMEG_2681 proline imino-peptidase; TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold protein YP_003116108.1 PFAM: metallophosphoesterase; KEGG: pho:PH1616 hypothetical protein YP_003116109.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: stp:Strop_0720 HAD family hydrolase YP_003116110.1 PFAM: NUDIX hydrolase; KEGG: sma:SAV_6505 ADP-ribose pyrophosphatase YP_003116111.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_003116112.1 PFAM: glycosyl transferase group 1; KEGG: tfu:Tfu_2026 glycosyl transferase YP_003116113.1 PFAM: virulence factor MVIN family protein; KEGG: saq:Sare_1908 virulence factor MviN family protein YP_003116114.1 KEGG: tfu:Tfu_2028 hypothetical protein YP_003116115.1 KEGG: kra:Krad_3145 hypothetical protein YP_003116116.1 PFAM: protein of unknown function DUF81; KEGG: sco:SCO0611 hypothetical protein YP_003116117.1 PFAM: UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sco:SCO0610 GntR family transcriptional regulator YP_003116118.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: stp:Strop_2949 ArsR family transcriptional regulator YP_003116119.1 KEGG: GE20840 gene product from transcript GE20840- RA YP_003116120.1 PFAM: peptidase M28; FAD dependent oxidoreductase; peptidase M20; KEGG: stp:Strop_0633 FAD dependent oxidoreductase YP_003116121.1 PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_0632 major facilitator transporter YP_003116122.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: sgr:SGR_1747 ArsR family transcriptional regulator YP_003116123.1 PFAM: major intrinsic protein; KEGG: stp:Strop_0634 low molecular weight phosphotyrosine protein phosphatase YP_003116124.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: sma:SAV_3756 low molecular weight protein tyrosine phosphatase YP_003116125.1 PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: kra:Krad_3146 thiamin pyrophosphokinase catalytic region YP_003116126.1 KEGG: rsa:RSal33209_3400 hypothetical protein YP_003116127.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sco:SCO5824 two-component sensor YP_003116128.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sma:SAV_2438 two-component system response regulator YP_003116129.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: sco:SCO1780 DNA repair protein YP_003116130.1 PFAM: ATP-NAD/AcoX kinase; KEGG: nca:Noca_2481 inorganic polyphosphate/ATP-NAD kinase YP_003116131.1 KEGG: sco:SCO1782 hypothetical protein; TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein YP_003116132.1 KEGG: art:Arth_1515 hypothetical protein YP_003116133.1 KEGG: nfa:nfa5720 hypothetical protein YP_003116134.1 KEGG: sma:SAV_6494 hypothetical protein YP_003116135.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: bvi:Bcep1808_3644 activator of HSP90 ATPase 1 family protein YP_003116136.1 PFAM: TetR family transcriptional regulator; KEGG: nfa:nfa9270 transcriptional regulator YP_003116137.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sen:SACE_6370 alpha-methylacyl-CoA racemase YP_003116139.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: haloacid dehalogenase; KEGG: sma:SAV_6490 hydrolase YP_003116140.1 KEGG: ace:Acel_1251 hypothetical protein YP_003116141.1 PFAM: conserved hypothetical protein; KEGG: sgr:SGR_5708 hypothetical protein YP_003116142.1 KEGG: mxa:MXAN_7048 hypothetical protein YP_003116143.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pla:Plav_2506 glyoxalase/bleomycin resistance protein/dioxygenase YP_003116144.1 PFAM: glycoside hydrolase; KEGG: sru:SRU_2845 xylosidase YP_003116145.1 PFAM: SPW repeat; KEGG: sco:SCO7261 hypothetical protein YP_003116146.1 KEGG: fre:Franean1_0195 hypothetical protein YP_003116148.1 KEGG: fal:FRAAL1464 hypothetical protein YP_003116149.1 PFAM: phosphate transporter; KEGG: fal:FRAAL1465 low-affinity inorganic phosphate transporter YP_003116150.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_5911 ABC transporter ATP-binding protein YP_003116151.1 PFAM: protein of unknown function DUF214; KEGG: sco:SCO4935 integral membrane protein YP_003116152.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV_1334 magnesium or manganese-dependent protein phosphatase YP_003116153.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: cmi:CMM_0578 quinone reductase YP_003116154.1 TIGRFAM: alpha-1,2-mannosidase; 40-residue YVTN family beta-propeller repeat protein; PFAM: glycosyl hydrolase 92; KEGG: mmi:MMAR_0952 alpha-1,2-mannosidase YP_003116155.1 PFAM: beta-lactamase; KEGG: tfu:Tfu_2040 Zn-dependent hydrolase YP_003116156.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: sma:SAV_7535 hydrolase YP_003116157.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: nfa:nfa3030 hypothetical protein YP_003116158.1 KEGG: rha:RHA1_ro04937 hypothetical protein YP_003116159.1 PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: sco:SCO1991 hypothetical protein YP_003116160.1 PFAM: aldehyde dehydrogenase; KEGG: nca:Noca_1053 aldehyde dehydrogenase YP_003116161.1 KEGG: kra:Krad_3800 hypothetical protein YP_003116162.1 KEGG: sma:SAV_6459 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA- binding S4 domain protein YP_003116163.1 TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: ace:Acel_1255 3-methyladenine DNA glycosylase YP_003116164.1 PFAM: Dual specificity protein phosphatase; KEGG: sma:SAV_2948 conventional protein tyrosine phosphatase YP_003116165.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: sgr:SGR_5967 argininosuccinate lyase YP_003116166.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_003116167.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: rsa:RSal33209_0781 ornithine carbamoyltransferase YP_003116168.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: kra:Krad_3158 acetylornithine and succinylornithine aminotransferase YP_003116169.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_003116170.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_003116171.1 KEGG: tfu:Tfu_2057 N-acetyl-gamma-glutamyl- phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: semialdehyde dehydrogenase dimerisation region; semialdehyde dehydrogenase NAD - binding YP_003116172.1 PFAM: transcriptional activator domain; TPR repeat- containing protein; NB-ARC domain protein; transcriptional regulator domain protein; SMART: hypothetical protein; KEGG: sgr:SGR_3012 transcriptional regulator YP_003116173.1 KEGG: bbt:BBta_3093 hypothetical protein YP_003116174.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mab:MAB_4838c acetyltransferase YP_003116175.1 KEGG: pol:Bpro_0146 hypothetical protein YP_003116176.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: stp:Strop_2301 methyltransferase type 11 YP_003116177.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_003116178.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_003116179.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sco:SCO1596 two-component sensor YP_003116180.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: sco:SCO1597 rRNA methylase YP_003116181.1 TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: sco:SCO1598 50S ribosomal protein L20 YP_003116182.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: nca:Noca_2460 50S ribosomal protein L35 YP_003116183.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: sma:SAV_6737 translation initiation factor IF- 3 YP_003116184.1 KEGG: krh:KRH_15680 hypothetical protein YP_003116186.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: saq:Sare_3935 deaminase-reductase domain- containing protein YP_003116187.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sco:SCO1607 serine protease membrane protein YP_003116188.1 KEGG: sma:SAV_6732 hypothetical protein YP_003116189.1 PFAM: alanine racemase domain protein; KEGG: sco:SCO1609 hypothetical protein YP_003116190.1 KEGG: rsa:RSal33209_2470 hypothetical protein YP_003116191.1 KEGG: nfa:nfa39530 phage polynucleotide kinase YP_003116192.1 KEGG: rlt:Rleg2_5631 hypothetical protein YP_003116193.1 KEGG: fre:Franean1_0059 serine/threonine protein kinase YP_003116194.1 KEGG: dsy:DSY4575 hypothetical protein YP_003116196.1 KEGG: dac:Daci_1744 hypothetical protein YP_003116197.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ter:Tery_3585 GCN5-related N- acetyltransferase YP_003116198.1 KEGG: sen:SACE_0866 hypothetical protein YP_003116199.1 KEGG: scl:sce2124 hypothetical protein YP_003116200.1 KEGG: nfa:nfa31990 hypothetical protein YP_003116201.1 KEGG: rha:RHA1_ro00874 hypothetical protein YP_003116202.1 KEGG: rha:RHA1_ro00873 hypothetical protein YP_003116203.1 SMART: ATPase AAA; KEGG: sco:SCO3261 ATP-binding protein YP_003116204.1 KEGG: sco:SCO3262 hypothetical protein YP_003116205.1 KEGG: PAF acetylhydrolase family protein; K01175 YP_003116206.1 PFAM: metallophosphoesterase; KEGG: tfu:Tfu_1000 phosphoesterase YhaO- DNA repair exonuclease YP_003116207.1 KEGG: tfu:Tfu_0999 hypothetical protein YP_003116208.1 KEGG: sgr:SGR_2887 hypothetical protein YP_003116209.1 KEGG: scl:sce_pseudo_03 pseudogene YP_003116210.1 PFAM: integrase family protein; KEGG: rxy:Rxyl_1592 phage integrase YP_003116213.1 TIGRFAM: RNA ligase, DRB0094 family; KEGG: sma:SAV_6605 hypothetical protein YP_003116214.1 PFAM: metallophosphoesterase; KEGG: sgr:SGR_1574 serine/threonine protein phosphatase YP_003116215.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: sma:SAV_2324 hypothetical protein YP_003116216.1 PFAM: phosphotransferase KptA/Tpt1; KEGG: cau:Caur_3741 phosphate acetyltransferase YP_003116217.1 KEGG: afw:Anae109_4212 LigA YP_003116218.1 KEGG: proteophosphoglycan 5 YP_003116219.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: fra:Francci3_4183 sigma-24 YP_003116220.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_003116221.1 PFAM: endoribonuclease L-PSP; KEGG: sgr:SGR_1562 endoribonuclease YP_003116222.1 catalyzes the conversion of salicylyl-CoA to gentisyl-CoA YP_003116223.1 PFAM: PaaX domain protein domain; PaaX domain protein; KEGG: sgr:SGR_1565 PaaX-like regulatory protein YP_003116224.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sen:SACE_3131 AMP-dependent acetyl-coenzyme A synthetase and ligase YP_003116225.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: sen:SACE_3133 acyl-CoA dehydrogenase YP_003116226.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC0279 acetyltransferase YP_003116227.1 KEGG: dge:Dgeo_1478 hypothetical protein YP_003116228.1 KEGG: sma:SAV_2738 hypothetical protein YP_003116229.1 PFAM: protein of unknown function DUF402; KEGG: sco:SCO1730 hypothetical protein YP_003116230.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: saq:Sare_3941 phospholipid/glycerol acyltransferase YP_003116231.1 KEGG: stp:Strop_1752 hypothetical protein YP_003116232.1 KEGG: nca:Noca_4615 hypothetical protein YP_003116233.1 PFAM: Conserved hypothetical protein; KEGG: nfa:nfa48310 hypothetical protein YP_003116234.1 KEGG: rha:RHA1_ro05583 hypothetical protein YP_003116235.1 PFAM: GCN5-related N-acetyltransferase; KEGG: saq:Sare_3174 GCN5-related N- acetyltransferase YP_003116236.1 PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; KEGG: sco:SCO7397 hypothetical protein YP_003116237.1 PFAM: aminoglycoside phosphotransferase; KEGG: sgr:SGR_3981 hypothetical protein YP_003116238.1 KEGG: cmi:CMM_2750 hypothetical protein YP_003116239.1 PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; KEGG: nca:Noca_3943 cystathionine gamma-synthase YP_003116240.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: stp:Strop_3154 AsnC/Lrp family regulatory protein YP_003116241.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: nfa:nfa20170 peptidase YP_003116242.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO3913 hypothetical protein YP_003116243.1 PFAM: ADP-ribosylation/crystallin J1; KEGG: saq:Sare_4641 ADP-ribosylation/crystallin J1 YP_003116244.1 KEGG: gme:Gmet_1673 hypothetical protein YP_003116245.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: rxy:Rxyl_0524 pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein YP_003116246.1 PFAM: alpha/beta hydrolase fold protein; KEGG: cak:Caul_3532 alpha/beta hydrolase fold protein YP_003116247.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: sgr:SGR_5555 methylated-DNA--protein- cysteine S-methyltransferase YP_003116248.1 PFAM: GCN5-related N-acetyltransferase; KEGG: saq:Sare_1733 GCN5-related N- acetyltransferase YP_003116249.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: nfa:nfa28580 hypothetical protein YP_003116250.1 PFAM: beta-lactamase; KEGG: rha:RHA1_ro02594 lactone hydrolase YP_003116251.1 PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_3045 major facilitator superfamily permease YP_003116252.1 KEGG: syd:Syncc9605_0834 hypothetical protein YP_003116253.1 KEGG: saq:Sare_0942 hypothetical protein YP_003116254.1 KEGG: nfa:nfa27370 hypothetical protein YP_003116255.1 KEGG: sen:SACE_3649 hypothetical protein YP_003116256.1 PFAM: NUDIX hydrolase; KEGG: saq:Sare_4976 NUDIX hydrolase YP_003116257.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: stp:Strop_2996 methyltransferase type 11 YP_003116258.1 PFAM: band 7 protein; KEGG: scl:sce5384 membrane protease subunit stomatin/prohibitin-like protein YP_003116259.1 PFAM: aminotransferase class V; KEGG: scl:sce8130 selenocysteine lyase / isopenicillin N epimerase YP_003116260.1 KEGG: kra:Krad_3717 hypothetical protein YP_003116261.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_4134 TetR family transcriptional regulator YP_003116262.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_0731 EmrB/QacA family drug resistance transporter YP_003116263.1 PFAM: TetR family transcriptional regulator; KEGG: cak:Caul_0550 TetR family transcriptional regulator YP_003116264.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: sme:SMc02439 hypothetical protein YP_003116265.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sen:SACE_2515 short-chain dehydrogenase/reductase SDR YP_003116266.1 SMART: helix-turn-helix domain protein; KEGG: msm:MSMEG_1631 DNA-binding protein YP_003116267.1 PFAM: NIPSNAP family containing protein; KEGG: aav:Aave_0043 NIPSNAP family containing protein YP_003116268.1 PFAM: alpha/beta hydrolase fold protein; KEGG: mlo:mll3776 streptothricin-acteyl-transferase YP_003116269.1 KEGG: sco:SCO1582 ATP/GTP binding protein YP_003116270.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mva:Mvan_3296 ABC transporter-related protein YP_003116271.1 PFAM: ABC transporter; KEGG: sma:SAV_4723 ABC transporter permease YP_003116272.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fal:FRAAL2902 hypothetical protein YP_003116273.1 KEGG: swp:swp_0828 hypothetical protein YP_003116274.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_003116275.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro00919 major facilitator superfamily multidrug resistance protein YP_003116276.1 PFAM: TetR family transcriptional regulator; KEGG: mmi:MMAR_2831 transcriptional regulator YP_003116277.1 SMART: von Willebrand factor type A; KEGG: pvi:Cvib_0122 hypothetical protein YP_003116278.1 KEGG: spw:SPCG_1750 cell wall surface anchor family protein YP_003116280.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: nca:Noca_2993 NAD-dependent epimerase/dehydratase YP_003116281.1 PFAM: glycosyl transferase family 2; KEGG: nca:Noca_2994 glycosyl transferase YP_003116282.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP- mannose dehydrogenase dimerisation; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: nca:Noca_2995 UDP-glucose/GDP-mannose dehydrogenase YP_003116283.1 KEGG: sus:acid_5129 hypothetical protein YP_003116284.1 KEGG: sma:SAV_2450 ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase; SMART: DEAD-like helicases; helicase domain protein YP_003116285.1 KEGG: sma:SAV_4085 hypothetical protein YP_003116286.1 KEGG: sgr:SGR_950 hypothetical protein YP_003116287.1 KEGG: sgr:SGR_948 hypothetical protein YP_003116288.1 PFAM: haloacid dehalogenase type 3; KEGG: msm:MSMEG_6407 Cof-like hydrolase YP_003116289.1 PFAM: methyltransferase type 11; methyltransferase small; UbiE/COQ5 methyltransferase; methyltransferase type 12; KEGG: rha:RHA1_ro05897 hypothetical protein YP_003116290.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_3047 peptide ABC transporter permease protein YP_003116291.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_3046 peptide ABC transporter permease protein YP_003116292.1 KEGG: tfu:Tfu_1630 oligopeptide/dipeptide ABC transporter ATP-binding protein, C-terminal; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003116293.1 PFAM: extracellular solute-binding protein family 5; KEGG: tfu:Tfu_0818 peptide/nickel transporter substrate-binding protein YP_003116294.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: fre:Franean1_4608 methyltransferase type 11 YP_003116295.1 PFAM: pentapeptide repeat protein; KEGG: sgr:SGR_4039 hypothetical protein YP_003116296.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cms:CMS_0895 hypothetical protein YP_003116297.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; KEGG: sco:SCO2004 formate dehydrogenase YP_003116298.1 KEGG: sma:SAV_6300 electron transporter YP_003116299.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sgr:SGR_1695 two-component system response regulator YP_003116300.1 PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; hypothetical protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; KEGG: sgr:SGR_1694 two-component system sensor kinase YP_003116301.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_2434 ABC transporter ATP-binding protein YP_003116302.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bch:Bcen2424_0032 binding-protein-dependent transporters inner membrane component YP_003116303.1 KEGG: sma:SAV_2432 ABC transporter substrate- binding protein YP_003116304.1 PFAM: alpha/beta hydrolase fold protein; KEGG: swi:Swit_2666 alpha/beta hydrolase fold protein YP_003116305.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: nca:Noca_2533 protein translocase subunit SecG YP_003116306.1 KEGG: sco:SCO1945 triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase YP_003116307.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_003116308.1 KEGG: rsa:RSal33209_2271 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_003116309.1 PFAM: protein of unknown function DUF199; KEGG: sma:SAV_6294 sporulation regulatory protein YP_003116310.1 KEGG: fre:Franean1_3726 GDSL family lipase YP_003116311.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: kra:Krad_2933 protein of unknown function UPF0052 and CofD YP_003116312.1 PFAM: conserved hypothetical protein; KEGG: sco:SCO1952 hypothetical protein YP_003116313.1 KEGG: sma:SAV_6291 excinuclease ABC subunit C; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain protein; helix-hairpin- helix motif; UvrB/UvrC protein; SMART: excinuclease ABC C subunit domain protein; DNA-binding protein YP_003116314.1 KEGG: GJ11367 gene product from transcript GJ11367- RA YP_003116315.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sco:SCO1356 iron sulphur protein (secreted protein) YP_003116316.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrsubunit betas scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_003116317.1 KEGG: saq:Sare_3341 mycothiol-dependent maleylpyruvate isomerase YP_003116318.1 PFAM: beta-lactamase; KEGG: sco:SCO1960 hydrolase YP_003116319.1 PFAM: beta-lactamase; KEGG: fre:Franean1_2056 beta-lactamase domain- containing protein YP_003116320.1 KEGG: PER1; period homolog 1 (Drosophila); K02633 period circadian protein YP_003116321.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sco:SCO3820 serine/threonine protein kinase YP_003116322.1 PFAM: protein of unknown function DUF1275; KEGG: cak:Caul_2541 hypothetical protein YP_003116323.1 KEGG: bam:Bamb_1569 chitinase; PFAM: carbohydrate-binding family V/XII; SMART: carbohydrate-binding family V/XII YP_003116324.1 KEGG: ace:Acel_2033 glycosyl hydrolase family chitinase; PFAM: carbohydrate-binding family V/XII; SMART: carbohydrate-binding family V/XII YP_003116325.1 KEGG: sgr:SGR_555 hypothetical protein YP_003116326.1 KEGG: sco:SCO2985 integral membrane protein YP_003116327.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: fal:FRAAL2907 short chain dehydrogenase/reductase YP_003116328.1 KEGG: nfa:nfa11290 monooxygenase YP_003116329.1 Catalyzes the transfer of electrons from NADH to quinone YP_003116330.1 KEGG: sgr:SGR_5057 hypothetical protein YP_003116331.1 KEGG: cau:Caur_3664 hypothetical protein YP_003116332.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); anticodon-binding domain protein; KEGG: sen:SACE_3644 threonyl-tRNA synthetase YP_003116333.1 KEGG: sco:SCO3634 ABC transporter transmembrane protein YP_003116334.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sco:SCO3633 ABC transporter ATP-binding protein YP_003116335.1 KEGG: sgr:SGR_6696 hypothetical protein YP_003116336.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: pap:PSPA7_5121 hypothetical protein YP_003116337.1 PFAM: transcriptional regulator; response regulator receiver; SMART: response regulator receiver; KEGG: sen:SACE_2833 two-component system response regulator YP_003116338.1 KEGG: bja:blr0521 hypothetical protein YP_003116339.1 PFAM: Penicillinase repressor; KEGG: sco:SCO3377 hypothetical protein YP_003116340.1 PFAM: peptidase M48 Ste24p; peptidase M56 BlaR1; KEGG: aau:AAur_1766 M48 family peptidase YP_003116341.1 KEGG: saq:Sare_0613 hypothetical protein YP_003116342.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sen:SACE_1934 RNA polymerase sigma factor YP_003116343.1 PFAM: major facilitator superfamily MFS_1; KEGG: sus:acid_2199 major facilitator transporter YP_003116344.1 PFAM: ABC transporter; aminoglycoside phosphotransferase; KEGG: sgr:SGR_3275 ABC1 family protein YP_003116345.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: sgr:SGR_2915 large-conductance mechanosensitive channel protein YP_003116346.1 PFAM: integral membrane protein TerC; KEGG: sco:SCO0892 integral membrane protein YP_003116347.1 KEGG: sen:SACE_3892 hypothetical protein YP_003116348.1 PFAM: protein of unknown function DUF75; KEGG: saq:Sare_1722 hypothetical protein YP_003116349.1 PFAM: Luciferase-like monooxygenase; KEGG: sgr:SGR_5193 oxidoreductase YP_003116350.1 KEGG: sco:SCO1079 hypothetical protein YP_003116351.1 KEGG: sma:SAV_6237 hypothetical protein YP_003116352.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-subunit beta is inserted between the strands, where it probes for the presence of a lesion YP_003116353.1 KEGG: sen:SACE_5300 hypothetical protein YP_003116354.1 KEGG: sma:SAV_3393 beta-N-acetylglucosaminidase; PFAM: glycoside hydrolase, family 20, catalytic core; ricin B lectin; coagulation factor 5/8 type domain protein; SMART: ricin B lectin YP_003116355.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAP1p64 acetyltransferase YP_003116356.1 PFAM: ricin B lectin; Ig family protein; SMART: ricin B lectin; KEGG: rsa:RSal33209_0035 hypothetical protein YP_003116357.1 KEGG: sma:SAV_7563 hypothetical protein YP_003116358.1 PFAM: ricin B lectin; Ig family protein; SMART: ricin B lectin; KEGG: rsa:RSal33209_0035 hypothetical protein YP_003116359.1 KEGG: sgr:SGR_2222 lon class III heat- shock ATP-dependent protease; TIGRFAM: ATP-dependent protease La; PFAM: ATPase AAA central domain protein; peptidase S16; ATPase associated with various cellular activities AAA_5; SMART: peptidase S16 lon domain protein; ATPase AAA YP_003116360.1 PFAM: cupin; KEGG: sen:SACE_6746 hypothetical protein YP_003116361.1 KEGG: scl:sce1311 monooxygenase YP_003116362.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase; KEGG: ace:Acel_0639 HAD family hydrolase YP_003116363.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sma:SAV_3415 dehydrogenase YP_003116364.1 PFAM: FAD linked oxidase; KEGG: sco:SCO4842 oxidoreductase YP_003116365.1 PFAM: UbiA prenyltransferase; KEGG: cef:CE2712 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase YP_003116366.1 KEGG: sgr:SGR_5537 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_003116367.1 KEGG: fal:FRAAL5497 hypothetical protein YP_003116368.1 KEGG: fra:Francci3_2206 hypothetical protein YP_003116369.1 KEGG; K01178 glucoamylase YP_003116370.1 KEGG: ace:Acel_1921 hypothetical protein YP_003116371.1 PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_1922 major facilitator transporter YP_003116372.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_003116373.1 PFAM: methyltransferase type 11; KEGG: sma:SAV_6232 SAM-dependent methyltransferase YP_003116374.1 PFAM: glycosyl transferase group 1; KEGG: tfu:Tfu_2468 glycosyltransferase YP_003116375.1 KEGG: mab:MAB_4284c hypothetical protein YP_003116376.1 KEGG: sma:SAV_6227 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2 YP_003116377.1 PFAM: thioesterase superfamily protein; KEGG: sma:SAV_6225 hypothetical protein YP_003116380.1 PFAM: aminoglycoside phosphotransferase; KEGG: sma:SAV_6001 hypothetical protein YP_003116381.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ace:Acel_1086 ABC transporter YP_003116382.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fal:FRAAL0728 branched-chain amino acid ABC transporter ATP-binding protein YP_003116383.1 PFAM: inner-membrane translocator; KEGG: ace:Acel_1084 inner-membrane translocator YP_003116384.1 PFAM: inner-membrane translocator; KEGG: fal:FRAAL0726 high-affinity branched-chain amino acid ABC transporter membrane protein YP_003116385.1 PFAM: extracellular ligand-binding receptor; KEGG: fra:Francci3_0341 extracellular ligand- binding receptor YP_003116386.1 PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; KEGG: sco:SCO2013 two-component system response regulator YP_003116387.1 TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 3; KEGG: stp:Strop_0585 selenocysteine-specific translation elongation factor YP_003116388.1 KEGG: stp:Strop_0584 selenocysteine synthase; TIGRFAM: L-seryl-tRNA selenium transferase; PFAM: L-seryl-tRNA selenium transferase YP_003116389.1 KEGG: stp:Strop_0583 selenide, water dikinase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_003116390.1 PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; NB-ARC domain protein; transcriptional regulator; SMART: hypothetical protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator YP_003116391.1 KEGG: sen:SACE_7326 twin-arginine translocation pathway signal YP_003116392.1 KEGG: swi:Swit_3253 hypothetical protein YP_003116393.1 KEGG: bpu:BPUM_3304 hypothetical protein YP_003116398.1 KEGG: sma:SAV_6217 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta YP_003116399.1 KEGG: mjl:Mjls_3056 hypothetical protein YP_003116400.1 glutamate synthase is composed of subunits alpha and beta; subunit beta is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the subunit alpha, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_003116401.1 PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase subunit alpha domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: sgr:SGR_5483 glutamate synthase (NADPH) large subunit YP_003116402.1 KEGG: scl:sce3531 hypothetical protein YP_003116403.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: sgr:SGR_5482 hypothetical protein YP_003116404.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: sco:SCO2034 prolipoprotein diacylglyceryl transferase YP_003116405.1 KEGG: sma:SAV_6179 integral membrane protein YP_003116406.1 KEGG: sma:SAV_6179 integral membrane protein YP_003116407.1 PFAM: DoxX family protein; KEGG: fal:FRAAL1525 hypothetical protein YP_003116408.1 KEGG: fre:Franean1_1933 tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase subunit alpha; PFAM: tryptophan synthase alpha chain YP_003116409.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_003116410.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_003116411.1 KEGG: sma:SAV_6173 hypothetical protein YP_003116412.1 KEGG: sco:SCO2042 hypothetical protein YP_003116413.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_003116414.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: ace:Acel_1070 phosphoribosyl-AMP cyclohydrolase YP_003116415.1 PFAM: protein of unknown function DUF1707; KEGG: sgr:SGR_411 hypothetical protein YP_003116416.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: tfu:Tfu_1158 ABC-type multidrug transporter ATPase and permeases YP_003116417.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: nca:Noca_3034 ABC transporter related YP_003116418.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: fal:FRAAL2982 sensory transduction protein YP_003116419.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: fal:FRAAL2981 two-component sensor YP_003116420.1 KEGG: fal:FRAAL2980 ABC transporter transmembrane protein YP_003116421.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fal:FRAAL2979 ABC transporter ATP-binding protein YP_003116422.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: kra:Krad_2971 imidazoleglycerol phosphate synthase, cyclase subunit YP_003116423.1 PFAM: endoribonuclease L-PSP; KEGG: sgr:SGR_5456 hypothetical protein YP_003116424.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis YP_003116425.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: mab:MAB_2667c imidazole glycerol phosphate synthase YP_003116427.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_003116428.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_003116429.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_003116430.1 PFAM: peptidase S16; SMART: peptidase S16 lon domain protein; KEGG: sma:SAV_6150 hypothetical protein YP_003116431.1 KEGG: sco:SCO2059 hypothetical protein YP_003116432.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sgr:SGR_5446 hypothetical protein YP_003116433.1 KEGG: mav:MAV_4459 hypothetical protein YP_003116434.1 KEGG: sgr:SGR_5432 ribosomal large subunit pseudouridine synthase; TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003116435.1 KEGG: sma:SAV_6132 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II YP_003116436.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: sma:SAV_6131 DNA-binding protein YP_003116437.1 PFAM: protein of unknown function DUF167; KEGG: stp:Strop_3204 hypothetical protein YP_003116438.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_003116439.1 KEGG: rca:Rcas_0423 alpha beta-propellor repeat- containing integrin YP_003116440.1 PFAM: protein of unknown function DUF88; KEGG: sgr:SGR_5442 hypothetical protein YP_003116441.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: sgr:SGR_2991 taurine catabolism dioxygenase YP_003116442.1 PFAM: TetR family transcriptional regulator; KEGG: pla:Plav_0388 TetR family transcriptional regulator YP_003116443.1 PFAM: aminoglycoside phosphotransferase; KEGG: stp:Strop_2284 aminoglycoside phosphotransferase YP_003116444.1 TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase; KEGG: sgr:SGR_4310 exodeoxyribonuclease YP_003116445.1 TIGRFAM: hypothetical protein; PFAM: virulence plasmid 65kDa B protein; YD repeat- containing protein; KEGG: reh:H16_B1352 insecticidal toxin complex protein YP_003116446.1 KEGG: reh:H16_B1353 insecticidal toxin complex protein YP_003116447.1 KEGG: reh:H16_B1353 insecticidal toxin complex protein YP_003116448.1 KEGG: sgr:SGR_1190 hypothetical protein YP_003116449.1 PFAM: protein of unknown function DUF574; methyltransferase type 11; methyltransferase type 12; KEGG: sco:SCO6606 hypothetical protein YP_003116450.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sgr:SGR_2541 methyltransferase YP_003116451.1 PFAM: lipase class 3; cell surface receptor IPT/TIG domain protein; KEGG: bam:Bamb_6262 lipase, class 3 YP_003116452.1 PFAM: PfkB domain protein; KEGG: ace:Acel_2120 ribokinase-like domain- containing protein YP_003116453.1 KEGG: cmi:CMM_2841 LacI family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003116454.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cmi:CMM_2842 sugar ABC transporter substrate binding protein YP_003116455.1 PFAM: inner-membrane translocator; KEGG: cms:CMS_2950 sugar transport integral membrane protein YP_003116456.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cmi:CMM_2844 sugar ABC transporter ATP-binding protein YP_003116457.1 PFAM: extracellular solute-binding protein family 1; KEGG: nca:Noca_3914 extracellular solute-binding protein YP_003116458.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: saq:Sare_3968 binding-protein-dependent transport systems inner membrane component YP_003116459.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: cms:CMS_0123 integral membrane transport protein YP_003116460.1 KEGG: nca:Noca_3918 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003116461.1 PFAM: TetR family transcriptional regulator; KEGG: fre:Franean1_6337 TetR family transcriptional regulator YP_003116462.1 KEGG: cms:CMS_0344 hypothetical protein YP_003116463.1 KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein YP_003116464.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: sco:SCO4482 LysR family transcriptional regulator YP_003116465.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: cvi:CV_2707 short chain dehydrogenase YP_003116466.1 PFAM: glycosidase PH1107-related; KEGG: aba:acid345_0916 glycosidase, PH1107-related YP_003116467.1 PFAM: helix-turn-helix HxlR type; KEGG: fre:Franean1_4769 HxlR family transcriptional regulator YP_003116468.1 PFAM: aldo/keto reductase; KEGG: nfa:nfa29550 oxidoreductase YP_003116469.1 PFAM: TetR family transcriptional regulator; KEGG: mjl:Mjls_5587 TetR family transcriptional regulator YP_003116470.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl01_2449 major facilitator transporter YP_003116471.1 PFAM: acid phosphatase (class B); KEGG: sma:SAV_6380 secreted acid phosphatase YP_003116472.1 PFAM: TetR family transcriptional regulator; KEGG: mgi:Mflv_0297 TetR family transcriptional regulator YP_003116473.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bac:BamMC406_3582 short-chain dehydrogenase/reductase SDR YP_003116474.1 KEGG: stp:Strop_4498 hypothetical protein YP_003116475.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fre:Franean1_0089 ECF subfamily RNA polymerase sigma-24 factor YP_003116476.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: LOC100092878; similar to epidermal cytokeratin 2 YP_003116477.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: bcj:BCAM1108 monooxygenase YP_003116478.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: stp:Strop_1409 hypothetical protein YP_003116479.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: stp:Strop_1410 hypothetical protein YP_003116480.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: fre:Franean1_4346 LuxR family transcriptional regulator YP_003116481.1 KEGG: mmw:Mmwyl1_0385 hypothetical protein YP_003116483.1 PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: calmodulin; K02183 calmodulin YP_003116484.1 PFAM: Muconolactone delta-isomerase; KEGG: mbo:Mb0324 muconolactone isomerase YP_003116485.1 KEGG: sgr:SGR_893 hypothetical protein YP_003116486.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: hya:HY04AAS1_1111 peptidase S11 D-alanyl-D- alanine carboxypeptidase 1 YP_003116487.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: nfa:nfa6930 two-component system response regulator YP_003116488.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: fre:Franean1_7134 integral membrane sensor signal transduction histidine kinase YP_003116489.1 PFAM: transcriptional regulator PadR family protein; KEGG: fal:FRAAL3670 transcriptional regulator YP_003116490.1 KEGG: fal:FRAAL3669 hypothetical protein YP_003116491.1 PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; KEGG: fre:Franean1_7136 peptidase M15D VanX D-ala-D- ala dipeptidase YP_003116492.1 vancomycin B-type resistance protein; catalyzes the formation of D-alanyl-D-lactate in peptidoglycan synthesis YP_003116493.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: fre:Franean1_7138 D-isomer specific 2- hydroxyacid dehydrogenase NAD-binding YP_003116494.1 TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-di aminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: fre:Franean1_7139 UDP-N-acetylmuramoylalanyl- D-glutamyl-2,6-diaminopimelate--D-alanyl- D-alanyl ligase YP_003116495.1 PFAM: methicillin resistance protein; KEGG: sco:SCO3593 hypothetical protein YP_003116496.1 SMART: helix-turn-helix domain protein; KEGG: sco:SCO3859 DNA-binding protein YP_003116497.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_4326 serine/threonine protein kinase YP_003116498.1 PFAM: peptidase S41; SMART: peptidase S41; KEGG: sgr:SGR_639 S41 family peptidase YP_003116499.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sen:SACE_1858 hypothetical protein YP_003116500.1 PFAM: TetR family transcriptional regulator; KEGG: fal:FRAAL0567 TetR family transcriptional regulator YP_003116501.1 KEGG: fal:FRAAL0568 hypothetical protein YP_003116502.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: sma:SAV_3465 integral membrane protein YP_003116503.1 PFAM: chloride channel core; KEGG: sus:acid_7899 CBS domain-containing protein YP_003116504.1 PFAM: peptidase S53 propeptide; cell wall binding repeat 2-containing protein; peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sma:SAV_5949 serine protease YP_003116505.1 KEGG: sma:SAV_144 hypothetical protein YP_003116506.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_867 ABC transporter ATP-binding protein YP_003116507.1 KEGG: GK12400 YP_003116508.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_868 ABC transporter ATP-binding protein YP_003116509.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: nca:Noca_2183 alcohol dehydrogenase YP_003116510.1 PFAM: TetR family transcriptional regulator; KEGG: mva:Mvan_1492 TetR family transcriptional regulator YP_003116511.1 KEGG: msm:MSMEG_2670 thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: thymidylate synthase YP_003116512.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: rha:RHA1_ro00870 methyltransferase YP_003116513.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: rha:RHA1_ro00869 transcriptional regulator YP_003116514.1 KEGG: sma:SAV_3782 hypothetical protein YP_003116515.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: sgr:SGR_338 ArsR family transcriptional regulator YP_003116517.1 PFAM: dimethylmenaquinone methyltransferase; KEGG: hau:Haur_2021 dimethylmenaquinone methyltransferase YP_003116519.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth YP_003116520.1 TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: nfa:nfa25590 hypothetical protein YP_003116521.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_003116522.1 PFAM: helix-turn-helix HxlR type; KEGG: fre:Franean1_2871 HxlR family transcriptional regulator YP_003116523.1 PFAM: NmrA family protein; dTDP-4-dehydrorhamnose reductase; KEGG: fre:Franean1_2868 nucleoside-diphosphate- sugar epimerase YP_003116524.1 KEGG: lil:LA2297 hypothetical protein YP_003116525.1 PFAM: penicillin-binding protein transpeptidase; NTF2 domain protein transpeptidase; KEGG: sco:SCO3156 penicillin-binding protein (secreted protein) YP_003116526.1 PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: saq:Sare_3099 SARP family transcriptional regulator YP_003116528.1 KEGG: saq:Sare_4185 hypothetical protein YP_003116530.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: saq:Sare_4186 ABC transporter YP_003116531.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: saq:Sare_4184 hypothetical protein YP_003116532.1 PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; hypothetical protein; NB- ARC domain protein; transcriptional regulator domain protein; hypothetical protein; SMART: hypothetical protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator YP_003116533.1 KEGG: azo:azo2305 hypothetical protein YP_003116534.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pde:Pden_3487 MarR family transcriptional regulator YP_003116535.1 KEGG: sen:SACE_4707 hypothetical protein YP_003116536.1 KEGG: gvi:gll3470 hypothetical protein YP_003116537.1 PFAM: acetyl xylan esterase; KEGG: sgr:SGR_835 deacetylase YP_003116538.1 PFAM: ribose/galactose isomerase; KEGG: sco:SCO1224 sugar-phosphate isomerase YP_003116539.1 KEGG: mab:MAB_2476 hypothetical protein YP_003116540.1 KEGG: fal:FRAAL5024 hypothetical protein YP_003116541.1 KEGG: mab:MAB_0550 hypothetical protein YP_003116542.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: rha:RHA1_ro06723 hypothetical protein YP_003116544.1 PFAM: ABC transporter; KEGG: bcl:ABC0846 excinuclease ABC subunit A YP_003116545.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sco:SCO4477 MerR family transcriptional regulator YP_003116547.1 PFAM: TetR family transcriptional regulator; KEGG: cak:Caul_2306 TetR family transcriptional regulator YP_003116548.1 PFAM: methyltransferase type 12; methyltransferase type 11; thiopurine S-methyltransferase; KEGG: rha:RHA1_ro11198 3-demethylubiquinone-9 3- methyltransferase YP_003116549.1 KEGG: rha:RHA1_ro11199 hypothetical protein YP_003116550.1 PFAM: peptidase S45 penicillin amidase; KEGG: vei:Veis_1397 penicillin amidase YP_003116551.1 KEGG: sgr:SGR_5180 hypothetical protein YP_003116552.1 PFAM: alpha amylase catalytic region; glycoside hydrolase starch-binding; alpha amylase all-beta; cell surface receptor IPT/TIG domain protein; SMART: alpha amylase catalytic sub domain; alpha amylase all-beta; KEGG: tpe:Tpen_1454 alpha amylase, catalytic region YP_003116553.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: tfu:Tfu_0830 multiple sugar transporter permease YP_003116554.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: tfu:Tfu_0831 multiple sugar transporter permease YP_003116555.1 PFAM: extracellular solute-binding protein family 1; KEGG: tfu:Tfu_0832 multiple sugar transporter substrate-binding protein YP_003116556.1 KEGG: saq:Sare_0746 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_003116557.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: aau:AAur_0921 alpha-amylase family protein YP_003116558.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sen:SACE_4257 alpha-glucosidase YP_003116559.1 PFAM: peptidase M55 D-aminopeptidase; KEGG: sma:SAV_1111 D-aminopeptidase YP_003116560.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: chy:CHY_0734 4-oxalocrotonate tautomerase YP_003116561.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: sen:SACE_4009 LysR family transcriptional regulator YP_003116562.1 PFAM: alpha/beta hydrolase fold protein; KEGG: stp:Strop_3365 alpha/beta hydrolase fold protein YP_003116563.1 KEGG: proteophosphoglycan 5 YP_003116565.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth YP_003116566.1 TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: sma:SAV_1696 hypothetical protein YP_003116567.1 PFAM: alpha/beta hydrolase fold protein; KEGG: bca:BCE_3158 bromoperoxidase YP_003116568.1 KEGG: sco:SCO4478 transferase YP_003116569.1 KEGG: rha:RHA1_ro04493 hypothetical protein YP_003116570.1 KEGG: saq:Sare_1717 tRNA (guanine-N(7)-)- methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase YP_003116571.1 KEGG: nfa:nfa18080 hypothetical protein YP_003116572.1 PFAM: conserved hypothetical protein; KEGG: sco:SCO5665 hypothetical protein YP_003116573.1 KEGG: fre:Franean1_4807 hypothetical protein YP_003116574.1 KEGG: fre:Franean1_4807 hypothetical protein YP_003116575.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: stp:Strop_2175 ABC transporter YP_003116576.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sma:SAV_2059 two-component system sensor kinase YP_003116577.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO3756 two component system response regulator YP_003116578.1 PFAM: YCII-related; KEGG: sco:SCO7731 hypothetical protein YP_003116580.1 PFAM: beta-lactamase; KEGG: kra:Krad_1284 beta-lactamase YP_003116581.1 KEGG: fal:FRAAL3455 hypothetical protein YP_003116582.1 KEGG: msm:MSMEG_2620 hypothetical protein YP_003116583.1 PFAM: ribonuclease II; KEGG: nca:Noca_2017 ribonuclease II YP_003116584.1 PFAM: transcriptional regulator PadR family protein; KEGG: fal:FRAAL1119 PadR-like family transcriptional regulator YP_003116586.1 PFAM: protein of unknown function DUF328; KEGG: sma:SAV_5879 hypothetical protein YP_003116587.1 KEGG: hypothetical protein YP_003116588.1 PFAM: phosphoglycerate mutase; ribonuclease H; KEGG: sco:SCO2299 bifunctional RNase H/acid phosphatase YP_003116589.1 PFAM: protein of unknown function DUF164; KEGG: sgr:SGR_5213 hypothetical protein YP_003116590.1 PFAM: protein of unknown function DUF34; KEGG: kra:Krad_3336 hypothetical protein YP_003116591.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: spe:Spro_2613 alcohol dehydrogenase YP_003116592.1 KEGG: swo:Swol_2185 hypothetical protein YP_003116593.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_003116594.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: sma:SAV_5871 dehydrogenase YP_003116595.1 PFAM: MaoC domain protein dehydratase; KEGG: sgr:SGR_5207 MaoC-like dehydratase YP_003116596.1 KEGG: abo:ABO_0786 hypothetical protein YP_003116597.1 PFAM: hypothetical protein; SMART: WD-40 repeat protein; KEGG: hypothetical protein YP_003116598.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sma:SAV_5052 transporter YP_003116599.1 activates fatty acids by binding to coenzyme A YP_003116600.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: fal:FRAAL4441 LysR-type transcriptional regulator YP_003116601.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fal:FRAAL4440 keto acyl reductase YP_003116602.1 PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_4123 major facilitator transporter YP_003116603.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sgr:SGR_5097 MarR family transcriptional regulator YP_003116604.1 KEGG: predicted protein YP_003116605.1 KEGG: sma:SAV_1445 tagatose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II YP_003116606.1 KEGG: sen:SACE_6317 tagatose-6-phosphate kinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein YP_003116607.1 PFAM: ROK family protein; KEGG: sco:SCO4285 sugar kinase YP_003116608.1 PFAM: sugar isomerase (SIS); KEGG: sgr:SGR_1582 hypothetical protein YP_003116609.1 PFAM: DeoR family transcriptional regulator; SMART: DeoR family transcriptional regulator; KEGG: sco:SCO1043 transcriptional regulator YP_003116610.1 PFAM: glycosyl transferase family 39; KEGG: fal:FRAAL4857 glycosyl transferase domain- containing protein YP_003116611.1 PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: nca:Noca_1189 aspartyl-tRNA synthetase YP_003116612.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: sgr:SGR_1621 Xaa-Pro aminopeptidase YP_003116613.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sgr:SGR_1622 GntR family transcriptional regulator YP_003116614.1 PFAM: proline racemase; KEGG: sma:SAV_1730 proline racemase YP_003116615.1 PFAM: dihydrodipicolinate synthetase; KEGG: sma:SAV_1731 dihydrodipicolinate synthase YP_003116616.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose- inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: sco:SCO6291 secreted oxidase YP_003116617.1 KEGG: sma:SAV_1733 hypothetical protein YP_003116618.1 PFAM: FAD dependent oxidoreductase; KEGG: sma:SAV_1734 oxidoreductase YP_003116619.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: sen:SACE_4908 cyclic nucleotide-binding domain-containing protein YP_003116620.1 PFAM: polyprenyl synthetase; KEGG: sgr:SGR_2263 polyprenyl diphosphate synthase YP_003116621.1 KEGG: cli:Clim_1275 hypothetical protein YP_003116622.1 PFAM: amino acid permease-associated region; KEGG: sco:SCO7002 amino acid/metabolite permease YP_003116623.1 KEGG: sma:SAV_6913 hypothetical protein YP_003116624.1 KEGG: sen:SACE_5210 isopentenyl-diphosphate delta- isomerase; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX hydrolase YP_003116625.1 PFAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase; KEGG: saq:Sare_3204 DNA-directed DNA polymerase YP_003116626.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sco:SCO6829 oxidoreductase YP_003116627.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ade:Adeh_2203 hypothetical protein YP_003116628.1 KEGG: sgr:SGR_1239 gamma- glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_003116629.1 KEGG: rha:RHA1_ro06017 hypothetical protein YP_003116630.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: sco:SCO7308 membrane transporter YP_003116631.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_003116632.1 PFAM: TetR family transcriptional regulator; Tetracyclin repressor domain protein; KEGG: sco:SCO4358 TetR family transcriptional regulator YP_003116633.1 PFAM: NADPH-dependent FMN reductase; KEGG: sgr:SGR_5059 NADPH-dependent FMN reductase YP_003116634.1 PFAM: TetR family transcriptional regulator; KEGG: sen:SACE_1058 TetR family transcriptional regulator YP_003116635.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: sma:SAV_5681 ABC transporter ATP-binding protein YP_003116636.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: fra:Francci3_0379 ABC transporter related YP_003116637.1 PFAM: lipase class 2; KEGG: sma:SAV_6559 secreted lipase YP_003116638.1 PFAM: histidine triad (HIT) protein; KEGG: fal:FRAAL1400 hypothetical protein YP_003116639.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: cms:CMS_2952 LacI family transcriptional regulator YP_003116640.1 KEGG: bur:Bcep18194_B1991 alpha-1,2-mannosidase, TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; ricin B lectin; SMART: ricin B lectin YP_003116641.1 KEGG: rrs:RoseRS_1517 coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein YP_003116642.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function RIO1; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: nfa:nfa23650 serine/threonine protein kinase YP_003116643.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mgi:Mflv_4559 acyl-CoA synthetase YP_003116644.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cau:Caur_3204 LysR substrate-binding YP_003116645.1 PFAM: ROK family protein; KEGG: stp:Strop_3849 ROK family protein YP_003116646.1 PFAM: inner-membrane translocator; KEGG: stp:Strop_3848 inner-membrane translocator YP_003116647.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: saq:Sare_4237 ABC transporter YP_003116648.1 KEGG: ace:Acel_1132 solute-binding protein YP_003116649.1 PFAM: pentapeptide repeat protein; KEGG: sco:SCO0802 hypothetical protein YP_003116650.1 PFAM: Luciferase-like monooxygenase; KEGG: tfu:Tfu_1926 hypothetical protein YP_003116651.1 PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: sma:SAV_4517 aminotransferase YP_003116653.1 PFAM: transglycosylase domain protein; peptidoglycan-binding LysM; SMART: peptidoglycan-binding LysM; KEGG: sgr:SGR_4438 secreted protein YP_003116654.1 PFAM: phosphoesterase; KEGG: mab:MAB_0555 non-hemolytic phospholipase C YP_003116655.1 KEGG: hypothetical protein YP_003116656.1 KEGG: hypothetical protein LOC716925 YP_003116657.1 PFAM: Ig domain protein group 1 domain protein; SMART: Ig domain protein group 1 domain protein; KEGG: mma:MM_1983 hypothetical protein YP_003116658.1 SMART: ArsR family transcriptional regulator; KEGG: sgr:SGR_4281 ArsR family transcriptional regulator YP_003116659.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: sgr:SGR_4280 hypothetical protein YP_003116660.1 KEGG: sgr:SGR_477 cholesterol oxidase YP_003116661.1 PFAM: dihydrodipicolinate reductase; KEGG: sgr:SGR_475 hypothetical protein YP_003116662.1 PFAM: carboxymuconolactone decarboxylase; KEGG: sgr:SGR_476 hypothetical protein YP_003116663.1 KEGG: swd:Swoo_3876 hypothetical protein YP_003116665.1 KEGG: rsa:RSal33209_2004 asparagine synthetase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; protein of unknown function DUF129; glutamine amidotransferase class-II YP_003116666.1 KEGG: sma:SAV_6028 integral membrane protein YP_003116667.1 KEGG: sco:SCO4511 integral membrane protein YP_003116668.1 PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rxy:Rxyl_2831 protein of unknown function DUF224, cysteine-rich region YP_003116669.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_003116670.1 PFAM: cupin; KEGG: sco:SCO1737 hypothetical protein YP_003116671.1 PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sco:SCO2792 AraC family transcription regulator YP_003116672.1 PFAM: FAD linked oxidase; KEGG: sen:SACE_6366 glycolate oxidase subunit YP_003116673.1 PFAM: FAD linked oxidase; KEGG: rxy:Rxyl_2832 FAD linked oxidase-like protein YP_003116674.1 KEGG: sma:SAV_2171 hypothetical protein YP_003116675.1 KEGG: sma:SAV_2170 cholesterol esterase YP_003116676.1 PFAM: TetR family transcriptional regulator; KEGG: nfa:nfa1170 transcriptional regulator YP_003116677.1 KEGG: sgr:SGR_1044 hypothetical protein YP_003116678.1 KEGG: sma:SAV_2169 hypothetical protein YP_003116679.1 PFAM: aminoglycoside phosphotransferase; KEGG: stp:Strop_1563 aminoglycoside phosphotransferase YP_003116680.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sen:SACE_2746 3-ketoacyl-(acyl-carrier- protein) reductase YP_003116681.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: rha:RHA1_ro01055 adenosylmethionine--8-amino- 7-oxononanoate transaminase YP_003116682.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nca:Noca_3138 ErfK/YbiS/YcfS/YnhG family protein YP_003116683.1 PFAM: aldo/keto reductase; KEGG: sgr:SGR_4236 oxidoreductase YP_003116684.1 KEGG: sen:SACE_1301 hypothetical protein YP_003116685.1 PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: kra:Krad_2872 NAD-dependent epimerase/dehydratase YP_003116686.1 PFAM: TetR family transcriptional regulator; KEGG: mab:MAB_2913 TetR family regulatory protein YP_003116687.1 PFAM: class II aldolase/adducin family protein; KEGG: mab:MAB_2912c aldolase YP_003116689.1 PFAM: carbohydrate-binding CenC domain protein; Fibronectin type III domain protein; glycoside hydrolase family 18; SMART: Fibronectin type III domain protein; chitinase II; KEGG: sma:SAV_3258 chitinase A YP_003116690.1 PFAM: Barstar (barnase inhibitor); KEGG: azo:azo3242 hypothetical protein YP_003116691.1 PFAM: guanine-specific ribonuclease N1 and T1; KEGG: sma:SAV_6882 guanyl-specific ribonuclease Sa3 precursor (RNase Sa3) YP_003116692.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_003116693.1 KEGG: sco:SCO2105 transcriptional regulator YP_003116694.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sgr:SGR_5396 oxidoreductase YP_003116695.1 PFAM: low temperature requirement A; KEGG: rha:RHA1_ro03556 low temperature requirement protein A YP_003116696.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: sgr:SGR_5394 glycine oxidase YP_003116697.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: ace:Acel_0988 thiamine biosynthesis protein ThiS YP_003116698.1 PFAM: thiazole biosynthesis protein; KEGG: sma:SAV_6093 thiazole synthase YP_003116699.1 KEGG: sgr:SGR_165 hypothetical protein YP_003116700.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: sma:SAV_6092 serine/threonine protein kinase YP_003116701.1 PFAM: stage II sporulation E family protein; ATP- binding region ATPase domain protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; KEGG: sma:SAV_1902 hypothetical protein YP_003116702.1 KEGG: tfu:Tfu_1533 hypothetical protein YP_003116703.1 KEGG: ppg:PputGB1_4223 hypothetical protein YP_003116704.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sen:SACE_5783 DMT family permease YP_003116705.1 KEGG: sma:SAV_890 hypothetical protein YP_003116706.1 KEGG: sco:SCO3659 hypothetical protein YP_003116707.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fal:FRAAL6409 hypothetical protein YP_003116708.1 PFAM: major facilitator superfamily MFS_1; KEGG: fra:Francci3_2289 major facilitator transporter YP_003116709.1 KEGG: saq:Sare_3089 hypothetical protein YP_003116710.1 KEGG: saq:Sare_3090 hypothetical protein YP_003116711.1 KEGG: fal:FRAAL1614 hypothetical protein YP_003116713.1 KEGG: sgl:SG0954 1-phosphofructokinase YP_003116714.1 PFAM: DNA alkylation repair enzyme; KEGG: aau:AAur_2403 DNA alkylation repair enzyme YP_003116715.1 KEGG: hypothetical protein; K08239 UDP-N- acetylglucosamine-lysosomal-enzyme YP_003116716.1 KEGG: sma:SAV_5240 hypothetical protein YP_003116717.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fal:FRAAL3591 MarR family transcriptional regulator YP_003116718.1 PFAM: acetamidase/Formamidase; KEGG: mva:Mvan_0644 acetamidase/formamidase YP_003116719.1 KEGG: ACR158Wp; K01104 protein-tyrosine phosphatase YP_003116720.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: mab:MAB_3318 regulatory protein YP_003116721.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid ac-diamide synthase; KEGG: saq:Sare_3928 cobyric acid synthase CobQ YP_003116722.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sma:SAV_1626 LysR family transcriptional regulator YP_003116723.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bvi:Bcep1808_2657 hypothetical protein YP_003116724.1 KEGG: sgr:SGR_4825 exodeoxyribonuclease V; TIGRFAM: helicase, RecD/TraA family; SMART: ATPase AAA; Helix-hairpin-helix DNA-binding class 1 YP_003116725.1 KEGG: sen:SACE_1968 1-aminocyclopropane-1- carboxylate deaminase YP_003116726.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: stp:Strop_3766 peptidase U62, modulator of DNA gyrase YP_003116727.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: saq:Sare_4147 peptidase U62 modulator of DNA gyrase YP_003116728.1 PFAM: aminotransferase class I and II; KEGG: tfu:Tfu_2223 hypothetical protein YP_003116729.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: fre:Franean1_4163 cobalamin (vitamin B12) biosynthesis CbiX protein YP_003116730.1 PFAM: precorrin-8X methylmutase CbiC/CobH; KEGG: stp:Strop_2518 precorrin-8X methylmutase CbiC/CobH YP_003116731.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sco:SCO1857 bifunctional protein (CbiGH) YP_003116732.1 KEGG: sma:SAV_6408 precorrin-6Y C5,15- methyltransferase; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15- methyltransferase (decarboxylating), CbiT subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; protein of unknown function methylase YP_003116733.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sco:SCO1855 precorrin-4 C11-methyltransferase YP_003116734.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: stp:Strop_2524 precorrin-2 C20- methyltransferase YP_003116735.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_003116736.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_003116737.1 KEGG: sco:SCO1850 chelatase; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; ATPase AAA YP_003116738.1 PFAM: oxidoreductase molybdopterin binding; KEGG: sgr:SGR_5389 hypothetical protein YP_003116739.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: stp:Strop_3869 nitrite reductase (NAD(P)H), large subunit YP_003116740.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: sgr:SGR_5388 bacterioferritin YP_003116741.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV_3471 two-component system sensor kinase YP_003116742.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; response regulator receiver; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; response regulator receiver; KEGG: tfu:Tfu_2582 LuxR response regulator receiver YP_003116743.1 KEGG: smt:Smal_4021 VacJ family lipoprotein YP_003116744.1 KEGG: mav:MAV_0788 hypothetical protein YP_003116745.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: saq:Sare_3482 threonine aldolase YP_003116746.1 KEGG: sma:SAV_6086 2-dehydro-3- deoxyphosphoheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II YP_003116747.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO1070 two component system response regulator YP_003116748.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sco:SCO1071 two component system sensor kinase YP_003116749.1 KEGG: sma:SAV_2598 hypothetical protein YP_003116750.1 PFAM: SMP-30/gluconolaconase/LRE domain protein; strictosidine synthase; KEGG: rha:RHA1_ro00912 strictosidine synthase YP_003116751.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_003116752.1 PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: sma:SAV_469 lipase YP_003116753.1 PFAM: protein of unknown function DUF1503; KEGG: saq:Sare_0394 hypothetical protein YP_003116754.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_6209 acetyltransferase YP_003116755.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sma:SAV_6082 two-component system response regulator YP_003116756.1 PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV_6081 two-component system sensor kinase YP_003116757.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: fre:Franean1_1829 phospholipid/glycerol acyltransferase YP_003116758.1 KEGG: sma:SAV_6079 esterase/lipase YP_003116759.1 KEGG: sgr:SGR_5379 hypothetical protein YP_003116760.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: sco:SCO2125 hypothetical protein YP_003116761.1 TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; KEGG: sgr:SGR_5377 glucokinase YP_003116762.1 KEGG: MARCO; macrophage receptor with collagenous structure YP_003116763.1 KEGG: sma:SAV_6072 ion transporting ATPase YP_003116764.1 PFAM: cyclase/dehydrase; KEGG: sco:SCO2129 hypothetical protein YP_003116765.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sco:SCO2131 long chain fatty acid CoA ligase YP_003116766.1 PFAM: aminoglycoside phosphotransferase; KEGG: sgr:SGR_6688 phosphotransferase YP_003116767.1 PFAM: regulatory protein MarR; ArsR family transcriptional regulator; SMART: regulatory protein MarR; KEGG: fal:FRAAL0920 hypothetical protein YP_003116768.1 KEGG: kpn:KPN_01592 hypothetical protein YP_003116769.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sco:SCO0918 excinuclease ABC subunit A YP_003116770.1 PFAM: aldo/keto reductase; KEGG: saq:Sare_0617 aldo/keto reductase YP_003116771.1 PFAM: YCII-related; KEGG: sgr:SGR_620 hypothetical protein YP_003116772.1 PFAM: glycosyl transferase group 1; KEGG: sco:SCO2132 glycosyl transferase YP_003116773.1 KEGG: sma:SAV_6066 hypothetical protein YP_003116774.1 KEGG: sma:SAV_6064 hypothetical protein YP_003116775.1 PFAM: cytochrome P450; KEGG: fre:Franean1_1901 cytochrome P450 YP_003116776.1 PFAM: TetR family transcriptional regulator; KEGG: sen:SACE_1632 TetR-type transcriptional regulator YP_003116777.1 KEGG: sco:SCO2787 hypothetical protein YP_003116778.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: fre:Franean1_2000 serine/threonine protein kinase YP_003116779.1 KEGG: mjl:Mjls_2721 hypothetical protein YP_003116780.1 PFAM: alpha/beta hydrolase fold protein; KEGG: gme:Gmet_1468 alpha/beta hydrolase fold protein YP_003116781.1 SMART: ArsR family transcriptional regulator; KEGG: sco:SCO3600 hypothetical protein YP_003116782.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: kra:Krad_4035 XRE family transcriptional regulator YP_003116783.1 PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: kra:Krad_4034 short-chain dehydrogenase/reductase SDR YP_003116784.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: sgr:SGR_4018 pyridoxamine 5'- phosphate oxidase-related protein YP_003116785.1 PFAM: helix-turn-helix HxlR type; KEGG: sma:SAV_4566 hypothetical protein YP_003116786.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: rxy:Rxyl_0881 MarR family transcriptional regulator YP_003116787.1 PFAM: PEBP family protein; KEGG: mrd:Mrad2831_0133 PEBP family protein YP_003116788.1 PFAM: beta-lactamase; KEGG: aba:acid345_4043 beta-lactamase YP_003116789.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sma:SAV_4680 two-component system sensor kinase YP_003116790.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sen:SACE_7262 response regulator, two- component system YP_003116791.1 PFAM: NLP/P60 protein; KEGG: sma:SAV_6063 NPL/P60-family secreted protein YP_003116792.1 PFAM: protein of unknown function DUF901; KEGG: sgr:SGR_5366 hypothetical protein YP_003116793.1 PFAM: rhomboid family protein; KEGG: sco:SCO6038 integral membrane protein YP_003116794.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: ace:Acel_0967 AsnC family transcriptional regulator YP_003116795.1 PFAM: DivIVA family protein; KEGG: sgr:SGR_5428 hypothetical protein YP_003116796.1 PFAM: protein of unknown function YGGT; KEGG: tfu:Tfu_1117 hypothetical protein YP_003116797.1 PFAM: protein of unknown function DUF552; KEGG: sco:SCO2079 hypothetical protein YP_003116798.1 PFAM: alanine racemase domain protein; KEGG: tfu:Tfu_1115 hypothetical protein YP_003116799.1 PFAM: protein of unknown function DUF152; KEGG: sco:SCO2081 hypothetical protein YP_003116800.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_003116801.1 PFAM: polypeptide-transport-associated domain protein FtsQ-type; KEGG: saq:Sare_3437 polypeptide-transport- associated domain-containing protein YP_003116803.1 PFAM: GntR family transcriptional regulator; aminotransferase class I and II; SMART: GntR family transcriptional regulator; KEGG: sma:SAV_3427 GntR family transcriptional regulator YP_003116805.1 KEGG: afw:Anae109_3917 hypothetical protein YP_003116806.1 KEGG: GK21299 YP_003116807.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bam:Bamb_0804 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_003116808.1 TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: ace:Acel_1011 UDP-N-acetylmuramate--L-alanine ligase YP_003116809.1 KEGG: sma:SAV_6122 N-acetylglucosaminyl transferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; PFAM: glycosyltransferase 28 domain; glycosyl transferase family 28 YP_003116810.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: sgr:SGR_5420 cell division protein FtsW YP_003116811.1 KEGG: mab:MAB_0096 hypothetical protein YP_003116812.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: btk:BT9727_4157 DMT family permease YP_003116813.1 PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bmj:BMULJ_04883 AraC family transcriptional regulator YP_003116814.1 KEGG: dac:Daci_4841 hypothetical protein YP_003116815.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: sgr:SGR_5419 UDP-N- acetylmuramoylalanine-D-glutamate ligase YP_003116816.1 KEGG: mjl:Mjls_2137 hypothetical protein YP_003116817.1 PFAM: gamma-glutamyltranspeptidase; KEGG: sen:SACE_0096 gamma-glutamyl transferase YP_003116818.1 PFAM: TetR family transcriptional regulator; KEGG: mab:MAB_0647 TetR family transcriptional regulator YP_003116819.1 KEGG: mlo:mll3824 hypothetical protein YP_003116820.1 KEGG: msm:MSMEG_1646 ribosomal RNA adenine dimethylase family protein; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase YP_003116821.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism YP_003116822.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: fre:Franean1_4864 cobalamin biosynthesis protein YP_003116823.1 KEGG: mlo:mll4972 hypothetical protein YP_003116825.1 PFAM: glycoside hydrolase; KEGG: scl:sce6897 hypothetical protein YP_003116826.1 KEGG: sco:SCO5581 hypothetical protein YP_003116827.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sgr:SGR_3904 hypothetical protein YP_003116828.1 KEGG: kra:Krad_4121 hypothetical protein YP_003116829.1 PFAM: glycoside hydrolase family 18; carbohydrate- binding family V/XII; SMART: chitinase II; carbohydrate-binding family V/XII; KEGG: ace:Acel_1460 glycosyl hydrolase family chitinase YP_003116830.1 PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: ace:Acel_0603 glycoside hydrolase family protein YP_003116831.1 PFAM: alpha/beta hydrolase fold protein; KEGG: mtc:MT0142 epoxide hydrolase YP_003116833.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mpa:MAP2446c hypothetical protein YP_003116834.1 KEGG: hypothetical protein LOC678915 YP_003116835.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: ajs:Ajs_2415 ECF subfamily RNA polymerase sigma-24 factor YP_003116836.1 PFAM: protein of unknown function RIO1; SMART: protein of unknown function RIO1; KEGG: saq:Sare_3291 protein of unknown function RIO1 YP_003116837.1 KEGG: smu:SMU.1587c hypothetical protein YP_003116838.1 TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: fal:FRAAL1055 orotate phosphoribosyltransferase (OprT) (oprtase) YP_003116839.1 PFAM: ApbE family lipoprotein; KEGG: sma:SAV_6768 thiamine biosynthesis lipoprotein precursor YP_003116840.1 PFAM: FMN-binding domain protein; KEGG: sma:SAV_6771 hypothetical protein YP_003116841.1 PFAM: ferric reductase domain protein transmembrane component domain; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; KEGG: sma:SAV_6772 oxidoreductase YP_003116842.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sma:SAV_6773 two-component system response regulator YP_003116843.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sma:SAV_6774 two-component system sensor kinase YP_003116844.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_4541 ABC transporter ATP-binding protein YP_003116845.1 PFAM: citrate synthase; KEGG: sma:SAV_2427 citrate synthase YP_003116846.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fre:Franean1_4341 glyoxalase/bleomycin resistance protein/dioxygenase YP_003116847.1 KEGG: sco:SCO3076 integral membrane protein YP_003116848.1 PFAM: protein of unknown function DUF1446; KEGG: fal:FRAAL1670 hypothetical protein YP_003116849.1 PFAM: aldo/keto reductase; KEGG: fra:Francci3_0458 aldo/keto reductase YP_003116850.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fal:FRAAL3681 ABC transporter ATP- binding protein YP_003116851.1 KEGG: fra:Francci3_2235 hypothetical protein YP_003116852.1 PFAM: Fibronectin type III domain protein; PKD domain containing protein; phosphoesterase; SMART: PKD domain containing protein; Fibronectin type III domain protein; KEGG: sus:acid_7414 hypothetical protein YP_003116853.1 PFAM: protein of unknown function DUF1707; KEGG: sma:SAV_3217 hypothetical protein YP_003116854.1 KEGG: scl:sce8945 hypothetical protein YP_003116855.1 KEGG: msm:MSMEG_2850 mycobacterial family protein 11 protein YP_003116856.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: rpb:RPB_1888 carbohydrate kinase, thermoresistant glucokinase YP_003116857.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: hypothetical protein; K01117 sphingomyelin phosphodiesterase YP_003116858.1 KEGG: rha:RHA1_ro05017 ABC transporter permease YP_003116859.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fal:FRAAL3623 ABC transporter (partial match) YP_003116861.1 PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sen:SACE_4523 AraC family transcription regulator YP_003116862.1 PFAM: major facilitator superfamily MFS_1; KEGG: sen:SACE_4522 major facilitator superfamily multidrug resistance protein YP_003116863.1 KEGG: fre:Franean1_6450 hypothetical protein YP_003116864.1 PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; KEGG: sco:SCO3829 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_003116865.1 PFAM: transketolase; transketolase domain protein; KEGG: sma:SAV_4363 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) E1-beta chain YP_003116866.1 KEGG: sgr:SGR_3748 branched-chain alpha keto acid dehydrogenase E1 subunit alpha; TIGRFAM: pyruvate dehydrogenase (acetyl- transferring) E1 component, subunit alpha; PFAM: dehydrogenase E1 component YP_003116867.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: art:Arth_3194 transcriptional regulator, AsnC family YP_003116868.1 PFAM: major facilitator superfamily MFS_1; KEGG: fra:Francci3_1315 major facilitator transporter YP_003116869.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: sen:SACE_3803 nitrite reductase (NAD(P)H) small subunit YP_003116870.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta- component ferrodoxin domain protein; KEGG: sma:SAV_5661 nitrite reductase (NAD(P)H) large subunit YP_003116871.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: saq:Sare_4259 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_003116872.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: nca:Noca_0350 assimilatory nitrate reductase (NADH) subunit alpha apoprotein YP_003116873.1 PFAM: uroporphyrinogen III synthase HEM4; transcriptional regulator domain protein; KEGG: fal:FRAAL1354 bifunctional uroporphyrinogen- III synthetase/response regulator domain-containing protein YP_003116874.1 PFAM: aminoglycoside phosphotransferase; KEGG: mab:MAB_0163c phosphotransferase YP_003116875.1 KEGG: pap:PSPA7_3915 hypothetical protein YP_003116876.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_3746 TetR family transcriptional regulator YP_003116877.1 TIGRFAM: phenylacetate-CoA ligase; KEGG: nfa:nfa21660 phenylacetate-CoA synthetase YP_003116878.1 TIGRFAM: beta-ketoadipyl CoA thiolase; acetyl-CoA acetyltransferase; PFAM: thiolase; KEGG: stp:Strop_1359 beta-ketoadipyl CoA thiolase YP_003116879.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: dar:Daro_0372 3-hydroxybutyryl-CoA dehydrogenase YP_003116880.1 TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: aldehyde dehydrogenase; KEGG: sma:SAV_4358 dehydrogenase YP_003116881.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_003116882.1 PFAM: chloramphenicol phosphotransferase family protein; KEGG: sma:SAV_877 chloramphenicol 3-O phosphotransferase YP_003116883.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_3675 GCN5-related N- acetyltransferase YP_003116885.1 PFAM: cytochrome P450; KEGG: stp:Strop_1867 cytochrome P450 YP_003116886.1 KEGG: sma:SAV_6516 hypothetical protein YP_003116887.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: mxa:MXAN_7068 hypothetical protein YP_003116888.1 KEGG: ade:Adeh_3810 hypothetical protein YP_003116889.1 KEGG: mxa:MXAN_1816 hypothetical protein YP_003116890.1 KEGG: sma:SAV_727 hypothetical protein YP_003116891.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: sma:SAV_2824 acetate kinase YP_003116892.1 KEGG: cmi:CMM_0895 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein YP_003116893.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: fre:Franean1_1196 phosphoketolase YP_003116894.1 KEGG: hau:Haur_2238 hypothetical protein YP_003116895.1 PFAM: Terpene synthase metal-binding domain protein; KEGG: fra:Francci3_4231 terpene synthase, metal- binding YP_003116896.1 KEGG: nca:Noca_2620 hypothetical protein YP_003116897.1 KEGG: GK24882 YP_003116898.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_1229 acetyltransferase YP_003116899.1 KEGG: sen:SACE_3822 hypothetical protein YP_003116900.1 KEGG: sma:SAV_2035 hypothetical protein YP_003116901.1 KEGG: scl:sce5793 hypothetical protein YP_003116902.1 KEGG: ace:Acel_1481 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003116903.1 KEGG: dge:Dgeo_2740 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003116904.1 KEGG: sma:SAV_3002 hypothetical protein YP_003116905.1 PFAM: peptidase S45 penicillin amidase; KEGG: sgr:SGR_4294 penicillin acylase YP_003116906.1 KEGG: sen:SACE_0308 hypothetical protein YP_003116907.1 PFAM: cupin; KEGG: nfa:nfa32740 hypothetical protein YP_003116908.1 PFAM: protein of unknown function DUF574; KEGG: sen:SACE_6478 hypothetical protein YP_003116909.1 SMART: helix-turn-helix domain protein; KEGG: fra:Francci3_3446 XRE family transcriptional regulator YP_003116910.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppd:Ppro_2206 major facilitator transporter YP_003116911.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppw:PputW619_0556 major facilitator transporter YP_003116912.1 KEGG: mjl:Mjls_4922 cupin 2, barrel YP_003116913.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: sma:SAV_4192 ATP/GTP-binding protein YP_003116914.1 TIGRFAM: FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro03606 oxidoreductase YP_003116915.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; homoserine dehydrogenase NAD-binding; KEGG: sco:SCO7641 dehydrogenase YP_003116916.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: fal:FRAAL3649 LysR family transcriptional regulator YP_003116918.1 KEGG: sen:SACE_2043 hypothetical protein YP_003116919.1 PFAM: major facilitator superfamily MFS_1; KEGG: ecf:ECH74115_3462 transporter major facilitator family YP_003116922.1 PFAM: regulatory protein LuxR; TrmB family transcriptional regulator; SMART: regulatory protein LuxR; KEGG: saq:Sare_1382 LuxR family transcriptional regulator YP_003116923.1 PFAM: TetR family transcriptional regulator; KEGG: nfa:nfa14550 transcriptional regulator YP_003116924.1 KEGG: nfa:nfa14560 hypothetical protein YP_003116925.1 KEGG: mgi:Mflv_0429 hypothetical protein YP_003116926.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: cmi:CMM_0578 quinone reductase YP_003116927.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sma:SAV_5668 hydrolase YP_003116928.1 PFAM: cupin; KEGG: fal:FRAAL0571 hypothetical protein YP_003116929.1 PFAM: TetR family transcriptional regulator; KEGG: fal:FRAAL0570 TetR family transcriptional regulator YP_003116930.1 PFAM: TetR family transcriptional regulator; KEGG: stp:Strop_2892 regulatory protein, TetR YP_003116931.1 KEGG: sma:SAV_5812 hypothetical protein YP_003116932.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: sco:SCO0841 oxidoreductase YP_003116933.1 KEGG: bja:blr4840 hypothetical protein YP_003116934.1 KEGG: sma:SAV_1073 hypothetical protein YP_003116935.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: afw:Anae109_4240 flavoprotein YP_003116936.1 PFAM: OsmC family protein; KEGG: afw:Anae109_4241 OsmC family protein YP_003116937.1 KEGG: rca:Rcas_2039 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold protein YP_003116938.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: azo:azo0472 probable O-acetylhomoserine aminocarboxypropyltransferase YP_003116939.1 PFAM: CoA-binding protein; KEGG: azo:azo0744 hypothetical protein YP_003116940.1 KEGG: cmi:CMM_2460 ATPase YP_003116941.1 KEGG: fra:Francci3_1123 hypothetical protein YP_003116942.1 KEGG: estExt_fgenesh1_pg.C_chr_10015. YP_003116943.1 PFAM: NLP/P60 protein; peptidoglycan-binding domain 1 protein; KEGG: rsa:RSal33209_0862 cell wall hydrolase YP_003116944.1 PFAM: protein of unknown function DUF1470; KEGG: msm:MSMEG_6742 hypothetical protein YP_003116945.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_3157 export protein YP_003116946.1 PFAM: MOSC domain containing protein; KEGG: sen:SACE_3422 uncharacterized Fe-S protein YP_003116947.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: sma:SAV_1077 melibiase YP_003116948.1 KEGG: bxe:Bxe_A2255 ATPase, RecF-like YP_003116949.1 KEGG: sco:SCO6327 integral membrane protein YP_003116950.1 PFAM: ribonuclease BN; KEGG: rha:RHA1_ro04300 hypothetical protein YP_003116951.1 PFAM: membrane protein of unknown function; KEGG: pca:Pcar_2963 hypothetical protein YP_003116952.1 PFAM: protein of unknown function UPF0118; KEGG: sgr:SGR_3788 integral membrane protein YP_003116953.1 KEGG: mav:MAV_1758 hypothetical protein YP_003116954.1 PFAM: phosphoesterase; KEGG: mpa:MAP3432 hypothetical protein YP_003116955.1 KEGG: fra:Francci3_3403 iron permease FTR1 YP_003116956.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: fra:Francci3_3404 Tat-translocated enzyme YP_003116957.1 KEGG: ote:Oter_3118 alpha-L-arabinofuranosidase- like protein YP_003116958.1 PFAM: X-Pro dipeptidyl-peptidase domain protein; KEGG: fre:Franean1_3229 X-Pro dipeptidyl-peptidase domain-containing protein YP_003116959.1 PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: sen:SACE_0421 transcriptional regulator YP_003116960.1 PFAM: polysaccharide deacetylase; KEGG: sez:Sez_0670 peptidoglycan N- acetylglucosamine deacetylase YP_003116961.1 PFAM: protein of unknown function DUF419; KEGG: sma:SAV_5586 MmcQ-like protein YP_003116962.1 KEGG: sen:SACE_1473 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding YP_003116963.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_003116964.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: noc:Noc_1509 UDP-sulfoquinovose synthase YP_003116965.1 KEGG: ace:Acel_1450 RND family efflux transporter MFP subunit YP_003116966.1 PFAM: glycosyl transferase family 2; KEGG: mkm:Mkms_4650 glycosyl transferase, family 2 YP_003116969.1 KEGG: aau:AAur_0640 lipoprotein YP_003116970.1 KEGG: pfu:PF1233 chitinase YP_003116971.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_1454 RNA polymerase ECF sigma factor YP_003116972.1 KEGG: sma:SAV_37 hypothetical protein YP_003116973.1 PFAM: monooxygenase FAD-binding; KEGG: rha:RHA1_ro03279 oxidoreductase YP_003116974.1 PFAM: Tetracyclin repressor domain protein; TetR family transcriptional regulator; KEGG: rha:RHA1_ro03280 TetR family transcriptional regulator YP_003116975.1 KEGG: saq:Sare_1463 hypothetical protein YP_003116977.1 KEGG: sgr:SGR_5290 oxidoreductase YP_003116978.1 PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; NB-ARC domain protein; transcriptional regulator; SMART: ATPase AAA; hypothetical protein; KEGG: sgr:SGR_5285 AfsR-like transcriptional regulator YP_003116979.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: saq:Sare_2136 two component LuxR family transcriptional regulator YP_003116980.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: mab:MAB_4284c hypothetical protein YP_003116981.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: fal:FRAAL3503 acyl-CoA dehydrogenase YP_003116982.1 TIGRFAM: amino acid adenylation protein; PFAM: AMP-dependent synthetase and ligase; thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: saq:Sare_2961 amino acid adenylation domain- containing protein YP_003116983.1 TIGRFAM: N-acetyl-ornithine/N-acetyl-lysine deacetylase; PFAM: peptidase M20; KEGG: rca:Rcas_3459 acetyl-lysine deacetylase YP_003116984.1 TIGRFAM: lysine biosynthesis enzyme LysX; alpha-L- glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: dge:Dgeo_1151 lysine biosynthesis enzyme LysX YP_003116985.1 KEGG: rxy:Rxyl_0774 hypothetical protein YP_003116986.1 KEGG: rxy:Rxyl_2597 hypothetical protein YP_003116988.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rle:pRL90152 pleiotropic regulator YP_003116989.1 PFAM: transketolase; KEGG: pth:PTH_2750 transketolase, N-terminal subunit YP_003116990.1 PFAM: transketolase; transketolase domain protein; KEGG: dau:Daud_2077 transketolase, central region YP_003116991.1 TIGRFAM: lysine biosynthesis protein LysW; KEGG: cau:Caur_0333 lysine biosynthesis protein LysW YP_003116992.1 KEGG: mjl:Mjls_2740 hypothetical protein YP_003116993.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sen:SACE_0496 3-oxoacyl-[acyl-carrier protein] reductase YP_003116994.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sen:SACE_0496 3-oxoacyl-[acyl-carrier protein] reductase YP_003116996.1 PFAM: fatty acid desaturase; KEGG: bte:BTH_I1365 fatty acid desaturase family protein YP_003116997.1 KEGG: bpd:BURPS668_2002 argininosuccinate lyase YP_003116998.1 KEGG: sco:SCO5949 hypothetical protein YP_003116999.1 KEGG: rrs:RoseRS_1060 N-acetyl-gamma-glutamyl- phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: semialdehyde dehydrogenase NAD - binding; semialdehyde dehydrogenase dimerisation region YP_003117000.1 KEGG: rca:Rcas_3466 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003117001.1 TIGRFAM: adenylylsulfate kinase; PFAM: adenylylsulfate kinase; KEGG: sgr:SGR_1394 adenylylsulfate kinase YP_003117002.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_003117003.1 KEGG: sgr:SGR_1396 sulfate adenylyltransferase subunit 1; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding YP_003117005.1 PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_5862 major facilitator superfamily permease YP_003117007.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: saq:Sare_1058 3-oxoacyl-(acyl-carrier- protein) synthase III YP_003117008.1 PFAM: alpha/beta hydrolase fold protein-3 domain protein; KEGG: saq:Sare_2662 alpha/beta hydrolase domain- containing protein YP_003117009.1 PFAM: peptidase C45 acyl-coenzyme A:6- aminopenicillanic acid acyl-transferase; KEGG: fra:Francci3_3269 peptidase C45, acyl- coenzyme A:6-aminopenicillanic acid acyl-transferase YP_003117010.1 KEGG: saq:Sare_1041 GCN5-related N- acetyltransferase YP_003117011.1 KEGG: saq:Sare_1042 hypothetical protein YP_003117012.1 PFAM: AMP-dependent synthetase and ligase; KEGG: saq:Sare_1043 AMP-dependent synthetase and ligase YP_003117013.1 PFAM: tRNA synthetase class I (M); Cupin 2 conserved barrel domain protein; KEGG: saq:Sare_1044 methionine--tRNA ligase YP_003117014.1 PFAM: FAD dependent oxidoreductase; KEGG: saq:Sare_1045 FAD dependent oxidoreductase YP_003117015.1 KEGG: fra:Francci3_3275 L-lysine 6-monooxygenase (NADPH) YP_003117016.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: saq:Sare_1049 acyl-CoA dehydrogenase domain- containing protein YP_003117017.1 KEGG: sdy:SDY_0676 methylaspartate mutase subunit S YP_003117018.1 PFAM: methylaspartate mutase E subunit; KEGG: ecm:EcSMS35_0750 methylaspartate mutase, E subunit YP_003117019.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rsq:Rsph17025_2503 cationic amino acid ABC transporter periplasmic binding protein YP_003117020.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bpy:Bphyt_0435 protein of unknown function DUF6 transmembrane YP_003117021.1 KEGG: bld:BLi01900 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase NAD - binding; semialdehyde dehydrogenase dimerisation region YP_003117022.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: fal:FRAAL2411 aspartate kinase (partial match) YP_003117023.1 KEGG: sen:SACE_4278 oxygenase (secreted protein) YP_003117024.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sfu:Sfum_1907 LysR family transcriptional regulator YP_003117025.1 PFAM: aminotransferase class I and II; KEGG: kra:Krad_4144 GntR family transcriptional regulator YP_003117026.1 PFAM: FAD linked oxidase; Berberine/berberine domain protein; KEGG: fra:Francci3_0043 twin-arginine translocation pathway signal YP_003117027.1 PFAM: aminotransferase class I and II; KEGG: sen:SACE_3049 aminotransferase YP_003117028.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sen:SACE_2894 methyltransferase YP_003117029.1 PFAM: radical SAM protein; KEGG: sgr:SGR_1490 hypothetical protein YP_003117031.1 PFAM: branched-chain amino acid transport; KEGG: rha:RHA1_ro03339 branched chain amino acid ABC transporter YP_003117032.1 PFAM: AzlC family protein; KEGG: sbl:Sbal_4248 AzlC family protein YP_003117033.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mlo:mlr5157 hypothetical protein YP_003117034.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: saq:Sare_4590 NmrA family protein YP_003117035.1 PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sen:SACE_4209 AraC family transcriptional regulator YP_003117037.1 KEGG: ace:Acel_0695 hypothetical protein YP_003117038.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: fre:Franean1_1259 major facilitator transporter YP_003117039.1 KEGG: GH24424 gene product from transcript GH24424- RA YP_003117040.1 KEGG: aba:acid345_3971 secreted protein YP_003117041.1 KEGG: pzu:PHZ_c0835 hypothetical protein YP_003117042.1 KEGG: hau:Haur_0880 hypothetical protein YP_003117043.1 PFAM: TetR family transcriptional regulator; KEGG: similar to novel pim oncogene family protein YP_003117044.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: saq:Sare_0553 flavin reductase domain- containing protein YP_003117045.1 KEGG: sgr:SGR_604 enediyne biosynthesis protein YP_003117046.1 PFAM: beta-ketoacyl synthase; acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_2697 beta-ketoacyl synthase YP_003117047.1 PFAM: sodium/hydrogen exchanger; KEGG: fra:Francci3_3440 sodium/hydrogen exchanger YP_003117048.1 PFAM: FAD dependent oxidoreductase; tryptophan halogenase; monooxygenase FAD-binding; KEGG: sco:SCO1275 halogenase YP_003117050.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: stp:Strop_2180 helix-turn-helix domain- containing protein YP_003117051.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: sco:SCO7661 secreted protein YP_003117052.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpi:Rpic_1138 short-chain dehydrogenase/reductase SDR YP_003117053.1 PFAM: protein of unknown function DUF1702; KEGG: sgr:SGR_606 enediyne biosynthesis protein YP_003117054.1 KEGG: saq:Sare_0556 hypothetical protein YP_003117055.1 PFAM: ASPIC/UnbV domain protein; KEGG: saq:Sare_0555 ASPIC/UnbV domain-containing protein YP_003117056.1 PFAM: TetR family transcriptional regulator; KEGG: mbb:BCG_0702c transcriptional regulator (probably TetR-family) YP_003117057.1 TIGRFAM:1D-myo-inosityl-2-acetamido-2-deoxy-alpha- D- glucopyranosidedeacetylase; PFAM: LmbE family protein; KEGG: ace:Acel_1868 LmbE family protein YP_003117058.1 PFAM: TetR family transcriptional regulator; KEGG: mpa:MAP4127c hypothetical protein YP_003117059.1 PFAM: Wyosine base formation domain protein; KEGG: stp:Strop_2706 wyosine base formation YP_003117060.1 PFAM: Carotenoid oxygenase; KEGG: nar:Saro_3580 carotenoid oxygenase YP_003117061.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: fre:Franean1_5810 short chain dehydrogenase YP_003117062.1 PFAM: aminoglycoside phosphotransferase; KEGG: sgr:SGR_4059 hypothetical protein YP_003117063.1 PFAM: carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carboxyl transferase; biotin/lipoyl attachment domain- containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: tfu:Tfu_1530 acetyl/propionyl-CoA carboxylase subunit alpha YP_003117065.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpi:Rpic_1138 short-chain dehydrogenase/reductase SDR YP_003117066.1 PFAM: cytochrome P450; KEGG: saq:Sare_0554 cytochrome P450 YP_003117067.1 PFAM: protein of unknown function DUF1702; KEGG: sgr:SGR_606 enediyne biosynthesis protein YP_003117068.1 PFAM: protein of unknown function DUF1702; KEGG: saq:Sare_0549 hypothetical protein YP_003117069.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: stp:Strop_2180 helix-turn-helix domain- containing protein YP_003117070.1 KEGG: mpa:MAP0250 hypothetical protein YP_003117071.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_003117072.1 KEGG: saq:Sare_0547 hypothetical protein YP_003117073.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: stp:Strop_2704 glucose-methanol-choline oxidoreductase YP_003117074.1 KEGG: mva:Mvan_0691 hypothetical protein YP_003117075.1 KEGG: saq:Sare_4952 hypothetical protein YP_003117076.1 KEGG: stp:Strop_2706 wyosine base formation YP_003117077.1 PFAM: protein of unknown function DUF1702; KEGG: stp:Strop_2700 hypothetical protein YP_003117078.1 PFAM: carboxymuconolactone decarboxylase; KEGG: sgr:SGR_614 hypothetical protein YP_003117079.1 PFAM: monooxygenase FAD-binding; KEGG: stp:Strop_2710 monooxygenase, FAD-binding YP_003117080.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: saq:Sare_0560 AraC family transcriptional regulator YP_003117081.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tfu:Tfu_0903 acetyltransferase YP_003117082.1 PFAM: response regulator receiver; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: response regulator receiver; KEGG: sco:SCO7298 thioredoxin reductase YP_003117083.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; cyclic nucleotide-binding; KEGG: fal:FRAAL1960 two-component sensor histidine kinase YP_003117085.1 PFAM: polysaccharide deacetylase; KEGG: sco:SCO2710 polysaccharide deacetylase YP_003117086.1 PFAM: glycosyl transferase family 2; KEGG: kra:Krad_1057 glycosyl transferase YP_003117087.1 KEGG: cur:cur_0492 cell surface protein precursor YP_003117088.1 PFAM: glycosyl transferase group 1; KEGG: mma:MM_0649 glucosyltransferase YP_003117089.1 KEGG: kra:Krad_1059 membrane protein protein YP_003117090.1 PFAM: glycosyl transferase group 1; KEGG: kra:Krad_1055 glycosyl transferase group 1 YP_003117092.1 PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: kra:Krad_1060 hypothetical protein YP_003117093.1 PFAM: glycosyl transferase family 2; KEGG: rpt:Rpal_4471 glycosyl transferase family 2 YP_003117094.1 PFAM: glycoside hydrolase family 5; KEGG: kra:Krad_1063 glycoside hydrolase family protein YP_003117095.1 PFAM: glycosyl transferase group 1; KEGG: kra:Krad_1062 glycosyl transferase group 1 YP_003117096.1 KEGG: sen:SACE_3919 hypothetical protein YP_003117097.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: sen:SACE_3918 dimethylaniline monooxygenase (N-oxide forming) YP_003117098.1 PFAM: Ig family protein; peptidase M4 thermolysin; peptidase M4 thermolysin; KEGG: sco:SCO1226 bifunctional protein YP_003117099.1 TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mkm:Mkms_1189 beta-phosphoglucomutase family hydrolase YP_003117100.1 PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: fra:Francci3_4347 glycoside hydrolase family protein YP_003117101.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_003117102.1 TIGRFAM: hypothetical protein; PFAM: YD repeat-containing protein; KEGG: sco:SCP1.274 large secreted protein YP_003117103.1 KEGG: sco:SCP1.273c large secreted protein YP_003117104.1 PFAM: peptidase S53 propeptide; KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein YP_003117105.1 PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; transcriptional regulator; SMART: Tetratricopeptide domain protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator YP_003117106.1 PFAM: regulatory protein LysR; KEGG: sil:SPO2961 LysR family transcriptional regulator YP_003117107.1 SMART: pyrrolo-quinoline quinone; KEGG: hypothetical protein YP_003117108.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sco:SCO1127 oxidoreductase YP_003117109.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_003117110.1 PFAM: transketolase; transketolase domain protein; KEGG: mab:MAB_2990c 1-deoxy-D-xylulose-5-phosphate synthase YP_003117111.1 PFAM: ABC transporter; ABC-2 type transporter; SMART: ATPase AAA; KEGG: sgr:SGR_5690 ABC transporter ATP- binding protein YP_003117112.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sma:SAV_3191 threonine synthase YP_003117113.1 PFAM: protein of unknown function UPF0016; KEGG: sco:SCO2347 integral membrane protein YP_003117114.1 KEGG: membrane associated protein YP_003117115.1 KEGG: saq:Sare_0598 hypothetical protein YP_003117116.1 KEGG: sma:SAV_5887 hypothetical protein YP_003117117.1 PFAM: NUDIX hydrolase; KEGG: saq:Sare_1221 NUDIX hydrolase YP_003117119.1 PFAM: ferritin; rubrerythrin; KEGG: rpi:Rpic_0139 ferritin Dps family protein YP_003117120.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_003117121.1 PFAM: GrpE protein; KEGG: sma:SAV_7238 GrpE homologue YP_003117122.1 PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: sma:SAV_7239 heat shock protein DnaJ YP_003117123.1 KEGG: sma:SAV_7240 hypothetical protein YP_003117124.1 KEGG: sma:SAV_7241 ATP-dependent Clp protease; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA; ATPase AAA central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA YP_003117125.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: rha:RHA1_ro06703 thioredoxin YP_003117126.1 KEGG: sma:SAV_7243 thioredoxin reductase; PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; SMART: cyclic nucleotide-binding YP_003117127.1 PFAM: chloride channel core; CBS domain containing protein; KEGG: sco:SCO6320 transport integral membrane protein YP_003117128.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sgr:SGR_6707 MarR family transcriptional regulator YP_003117129.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sma:SAV_1188 MarR family transcriptional regulator YP_003117130.1 KEGG: sma:SAV_1189 regulatory protein YP_003117131.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pst:PSPTO_4079 sensor histidine kinase/response regulator YP_003117132.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_003117133.1 KEGG: sco:SCO1235 urease subunit beta; TIGRFAM: urease, subunit beta; PFAM: Urease subunit beta YP_003117134.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_003117135.1 KEGG: sgr:SGR_6298 urease accessory protein YP_003117136.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: fra:Francci3_2663 urease accessory protein UreG YP_003117137.1 KEGG: sco:SCO1231 urease accessory protein YP_003117139.1 PFAM: isochorismatase hydrolase; KEGG: fre:Franean1_0732 isochorismatase hydrolase YP_003117140.1 PFAM: xanthine/uracil/vitamin C permease; KEGG: mkm:Mkms_2810 xanthine/uracil/vitamin C permease YP_003117141.1 KEGG: fal:FRAAL6404 hypothetical protein YP_003117142.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: fal:FRAAL6405 transcriptional regulator YP_003117143.1 PFAM: isochorismatase hydrolase; KEGG: fre:Franean1_0676 isochorismatase hydrolase YP_003117146.1 PFAM: cupin; KEGG: stp:Strop_2876 cupin 2 domain-containing protein YP_003117147.1 PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sma:SAV_4003 AraC family transcription regulator YP_003117148.1 KEGG: bcj:BCAS0624 hypothetical protein YP_003117149.1 KEGG: fre:Franean1_5770 hypothetical protein YP_003117150.1 PFAM: amidohydrolase; KEGG: bur:Bcep18194_A4912 amidohydrolase YP_003117151.1 KEGG: rha:RHA1_ro02919 flavin binding monooxygenase YP_003117152.1 PFAM: peptidase S15; alpha/beta hydrolase fold protein; KEGG: mmi:MMAR_0385 hypothetical protein YP_003117153.1 PFAM: monooxygenase FAD-binding; KEGG: vei:Veis_3440 monooxygenase, FAD-binding YP_003117154.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: rha:RHA1_ro03285 aryl-alcohol dehydrogenase YP_003117155.1 PFAM: aldehyde dehydrogenase; KEGG: pae:PA2125 aldehyde dehydrogenase YP_003117156.1 PFAM: fumarylacetoacetate hydrolase; KEGG: fal:FRAAL6170 2-hydroxyhepta-2,4-diene-1,7- dioate isomerase (HhdD isomerase)/5-carboxymethyl-2-oxo- hex-3-ene-1,7-dioate decarboxylase (OPET decarboxylase) YP_003117157.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_C0992 hypothetical protein YP_003117158.1 PFAM: transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: chy:CHY_1273 IclR family transcriptional regulator YP_003117159.1 PFAM: TetR family transcriptional regulator; KEGG: sma:SAV_566 TetR family transcriptional regulator YP_003117160.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro05082 major facilitator superfamily multidrug resistance protein YP_003117161.1 catalyzes the cleavage of carbon-halogen bonds in aliphatic compounds forming a primary alcohol and a halide YP_003117162.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: sma:SAV_4780 hypothetical protein YP_003117163.1 PFAM: TetR family transcriptional regulator; KEGG: mmi:MMAR_5193 hypothetical protein YP_003117164.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: saq:Sare_0800 ECF subfamily RNA polymerase sigma-24 factor YP_003117165.1 KEGG: krh:KRH_03110 hypothetical protein YP_003117166.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: sco:SCO5932 arabinofuranosidase YP_003117167.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: sgr:SGR_6490 chitinase YP_003117168.1 KEGG: fal:FRAAL4738 LuxR family transcriptional regulator YP_003117169.1 KEGG: tfu:Tfu_2003 transaldolase YP_003117170.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: fre:Franean1_3684 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_003117171.1 KEGG: sco:SCO5078 hypothetical protein YP_003117172.1 KEGG: sco:SCO5074 dehydratase YP_003117173.1 PFAM: NmrA family protein; KEGG: sco:SCO5079 hypothetical protein YP_003117174.1 KEGG: sco:SCO5078 hypothetical protein YP_003117175.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: sco:SCO5077 hypothetical protein YP_003117176.1 PFAM: beta-ketoacyl synthase; KEGG: sco:SCO5087 actinorhodin polyketide beta- ketoacyl synthase subunit alpha YP_003117177.1 PFAM: beta-ketoacyl synthase; KEGG: sco:SCO5088 actinorhodin polyketide beta- ketoacyl synthase subunit beta YP_003117178.1 PFAM: phosphopantetheine-binding; KEGG: fra:Francci3_4147 phosphopantetheine-binding YP_003117179.1 KEGG: sco:SCO5090 actinorhodin polyketide synthase bifunctional cyclase/dehydratase YP_003117180.1 PFAM: acyl-CoA dehydrogenase type 2 domain; KEGG: sco:SCO5080 hydrolase YP_003117181.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: sco:SCO5081 hypothetical protein YP_003117182.1 KEGG: saq:Sare_2317 luciferase family protein YP_003117183.1 PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: bxe:Bxe_B2697 short-chain type dehydrogenase/reductase YP_003117184.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO5086 ketoacyl reductase YP_003117185.1 PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: fra:Francci3_4104 aromatic-ring-hydroxylating dioxygenase, beta subunit YP_003117186.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: sth:STH1890 oxidoreductase YP_003117187.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: fra:Francci3_4105 zinc-binding alcohol dehydrogenase YP_003117188.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO5083 actinorhodin transporter YP_003117189.1 PFAM: Tetracyclin repressor domain protein; TetR family transcriptional regulator; KEGG: sco:SCO5082 transcriptional regulator YP_003117190.1 PFAM: beta-lactamase; KEGG: fra:Francci3_4097 beta-lactamase-like YP_003117191.1 PFAM: carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: sgr:SGR_2621 acyl-CoA carboxylase subunit alpha YP_003117192.1 KEGG: sco:SCO4925 hypothetical protein YP_003117193.1 PFAM: carboxyl transferase; KEGG: sco:SCO6284 decarboxylase YP_003117194.1 PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: sma:SAV_2369 regulatory protein YP_003117195.1 PFAM: glycoside hydrolase family 18; carbohydrate binding family 6; SMART: chitinase II; KEGG: cms:CMS_0332 hydrolase YP_003117196.1 PFAM: UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sgr:SGR_1315 GntR family transcriptional regulator YP_003117197.1 PFAM: protein of unknown function DUF1486; KEGG: bce:BC0915 hypothetical protein YP_003117198.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: sgr:SGR_6264 RNA polymerase ECF-subfamily sigma factor YP_003117199.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: kra:Krad_3930 MarR family transcriptional regulator YP_003117200.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: mjl:Mjls_1183 alcohol dehydrogenase YP_003117201.1 KEGG: bam:Bamb_6225 short-chain dehydrogenase/reductase SDR YP_003117202.1 KEGG: sma:SAV_6231 ATP-dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase-associated domain protein; helicase; SMART: DEAD-like helicases; helicase YP_003117203.1 PFAM: radical SAM protein; KEGG: fre:Franean1_5726 radical SAM domain- containing protein YP_003117204.1 KEGG: GH17832 gene product from transcript GH17832- RA YP_003117205.1 PFAM: transcriptional activator domain; TPR repeat- containing protein; hypothetical protein; NB-ARC domain protein; transcriptional regulator; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator YP_003117206.1 KEGG: sgr:SGR_4974 secreted protein YP_003117207.1 KEGG: sen:SACE_0522 hypothetical protein YP_003117208.1 KEGG: sma:SAV_1812 hypothetical protein YP_003117209.1 KEGG: sma:SAV_5193 hypothetical protein YP_003117210.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: mlo:mlr0241 hypothetical protein YP_003117211.1 PFAM: NmrA family protein; dTDP-4-dehydrorhamnose reductase; KEGG: stp:Strop_1958 NmrA family protein YP_003117212.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: nfa:nfa6880 hypothetical protein YP_003117213.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mjl:Mjls_3876 MarR family transcriptional regulator YP_003117214.1 KEGG: min:Minf_0834 hypothetical protein YP_003117215.1 TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: sgr:SGR_614 hypothetical protein YP_003117216.1 KEGG: sma:SAV_5345 ABC transporter transmembrane protein YP_003117217.1 PFAM: ABC transporter; X-Pro dipeptidyl- peptidase domain protein; alpha/beta hydrolase fold protein; peptidase S15; SMART: ATPase AAA; KEGG: saq:Sare_0296 ABC transporter YP_003117218.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: fal:FRAAL2982 sensory transduction protein YP_003117219.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: sco:SCO6362 two-component sensor YP_003117220.1 KEGG: fal:FRAAL2980 ABC transporter transmembrane protein YP_003117221.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: kra:Krad_2001 ABC transporter-related protein YP_003117222.1 KEGG: rha:RHA1_ro03760 hypothetical protein YP_003117223.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: fra:Francci3_0168 NAD-dependent epimerase/dehydratase YP_003117224.1 PFAM: protein of unknown function UPF0118; KEGG: rha:RHA1_ro08572 hypothetical protein YP_003117225.1 KEGG: sgr:SGR_424 hypothetical protein YP_003117226.1 PFAM: TetR family transcriptional regulator; KEGG: sen:SACE_1252 TetR family transcriptional regulator YP_003117227.1 PFAM: NmrA family protein; KEGG: sgr:SGR_2932 hypothetical protein YP_003117228.1 PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_1471 major facilitator transporter YP_003117229.1 PFAM: cyclase/dehydrase; hemerythrin HHE cation binding domain protein; KEGG: kra:Krad_0825 cyclase/dehydrase YP_003117230.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sco:SCO7205 hydrolase YP_003117231.1 KEGG: sen:SACE_4188 hypothetical protein YP_003117232.1 KEGG: sgr:SGR_5032 hypothetical protein YP_003117233.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: sco:SCO3067 anti anti sigma factor YP_003117234.1 KEGG: fal:FRAAL3674 uridine kinase YP_003117235.1 KEGG: sma:SAV_5684 hypothetical protein YP_003117236.1 KEGG: stp:Strop_1774 hypothetical protein YP_003117237.1 KEGG: kra:Krad_4480 hypothetical protein YP_003117238.1 PFAM: protein of unknown function DUF1469; KEGG: saq:Sare_1759 hypothetical protein YP_003117239.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sus:acid_4397 GCN5-related N- acetyltransferase YP_003117240.1 KEGG: bpd:BURPS668_2027 outer membrane protein YP_003117241.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: nca:Noca_3654 sigma-70, region 4 type 2 YP_003117242.1 KEGG: bxe:Bxe_A4325 hemagglutinin-related transmembrane protein YP_003117243.1 PFAM: glycoside hydrolase family 6; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: tfu:Tfu_1074 endoglucanase YP_003117244.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: fre:Franean1_0929 endonuclease/exonuclease/phosphatase YP_003117245.1 KEGG: sma:SAV_3597 hypothetical protein YP_003117246.1 PFAM: MMPL domain protein; KEGG: sma:SAV_3408 integral membrane export protein YP_003117247.1 PFAM: TetR family transcriptional regulator; KEGG: fre:Franean1_5720 TetR family transcriptional regulator YP_003117248.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: kra:Krad_2036 short-chain dehydrogenase/reductase SDR YP_003117249.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rfr:Rfer_0859 ABC transporter YP_003117250.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pzu:PHZ_p0154 ABC transporter, ATPase component YP_003117251.1 PFAM: ABC transporter; KEGG: ade:Adeh_3115 ABC transporter inner membrane subunit YP_003117253.1 PFAM: protein of unknown function DUF214; KEGG: sco:SCO2673 hypothetical protein YP_003117254.1 PFAM: protein of unknown function DUF214; KEGG: sco:SCO2672 hypothetical protein YP_003117255.1 PFAM: cell wall binding repeat 2- containing protein; PKD domain containing protein; SMART: PKD domain containing protein; KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein YP_003117258.1 KEGG: fre:Franean1_2552 hypothetical protein YP_003117259.1 KEGG: kinetoplast DNA-associated protein YP_003117260.1 KEGG: sma:SAV_5364 ATP-binding protein YP_003117261.1 KEGG: sma:SAV_1399 hypothetical protein YP_003117262.1 KEGG: sma:SAV_1400 hypothetical protein YP_003117263.1 KEGG: sma:SAV_1401 hypothetical protein YP_003117264.1 KEGG: sco:SCO3290 hypothetical protein YP_003117266.1 PFAM: transcriptional activator domain; KEGG: sco:SCO3291 regulatory protein YP_003117268.1 KEGG: fre:Franean1_6995 hypothetical protein YP_003117269.1 KEGG: fre:Franean1_2552 hypothetical protein YP_003117270.1 KEGG: bwe:BcerKBAB4_5541 hypothetical protein YP_003117271.1 KEGG: ace:Acel_0372 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10 YP_003117272.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sco:SCO3436 fatty acid CoA ligase YP_003117273.1 PFAM: protein of unknown function zinc metallopeptidase KEGG: sgr:SGR_5652 metalloprotease YP_003117274.1 KEGG: sco:SCO7508 hypothetical protein YP_003117275.1 PFAM: glutamate--cysteine ligase; KEGG: sen:SACE_2909 glutamate--cysteine ligase YP_003117276.1 KEGG: spv:SPH_1885 cell wall surface anchor family protein YP_003117278.1 TIGRFAM: sulfate transporter; PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; xanthine/uracil/vitamin C permease; KEGG: rha:RHA1_ro03757 SulP family sulfate transporter YP_003117279.1 KEGG: fre:Franean1_0203 hypothetical protein YP_003117280.1 PFAM: diacylglycerol kinase; KEGG: sma:SAV_5015 hypothetical protein YP_003117281.1 KEGG: sgr:SGR_5155 integral membrane protein YP_003117283.1 KEGG: fre:Franean1_1502 carboxymuconolactone decarboxylase YP_003117284.1 KEGG: rha:RHA1_ro04270 hypothetical protein YP_003117285.1 KEGG: sma:SAV_1926 hypothetical protein YP_003117286.1 KEGG: sma:SAV_7336 integral membrane protein YP_003117287.1 PFAM: amino acid permease-associated region; KEGG: bmc:BAbS19_II07980 amino acid/polyamine transporter family I YP_003117289.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rha:RHA1_ro03735 hypothetical protein YP_003117290.1 PFAM: peptidase M24; KEGG: sma:SAV_2161 peptidase YP_003117291.1 PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_5182 EmrB/QacA family drug resistance transporter YP_003117292.1 KEGG: sgr:SGR_6314 hypothetical protein YP_003117293.1 PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_5554 major facilitator transporter YP_003117294.1 KEGG: sma:SAV_1927 integral membrane protein YP_003117295.1 KEGG: sus:acid_3630 hypothetical protein YP_003117296.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: ace:Acel_0156 large conductance mechanosensitive channel protein YP_003117297.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: sgr:SGR_6670 dehydrogenase YP_003117298.1 PFAM: protein of unknown function DUF72; KEGG: sco:SCO6458 hypothetical protein YP_003117299.1 PFAM: transglycosylase; KEGG: sma:SAV_1006 hypothetical protein YP_003117300.1 PFAM: glutamate--cysteine ligase; KEGG: stp:Strop_2542 glutamate--cysteine ligase, GCS2 YP_003117301.1 PFAM: protein of unknown function DUF1470; KEGG: cak:Caul_4029 hypothetical protein YP_003117302.1 PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_3065 major facilitator transporter YP_003117303.1 PFAM: peptidoglycan-binding protein; SMART: helix-turn-helix domain protein; KEGG: sco:SCO4817 serine/threonine protein kinase YP_003117304.1 KEGG: sma:SAV_3440 hypothetical protein YP_003117305.1 PFAM: ricin B lectin; KEGG: fal:FRAAL0616 xylanase YP_003117307.1 KEGG: sgr:SGR_4818 lysozyme M1 precursor; PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25 YP_003117308.1 SMART: PBS lyase HEAT domain protein repeat- containing protein; KEGG: ana:all3892 hypothetical protein YP_003117309.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: sco:SCO5932 arabinofuranosidase YP_003117310.1 KEGG: Os04g0100300; hypothetical protein YP_003117311.1 KEGG: leucine-rich repeat family protein YP_003117312.1 KEGG: smd:Smed_6306 hypothetical protein YP_003117313.1 SMART: Parallel beta-helix repeat; KEGG: sma:SAV_1407 hypothetical protein YP_003117314.1 PFAM: transcription activator effector binding; KEGG: sdn:Sden_1132 transcription activator, effector binding YP_003117317.1 TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: rxy:Rxyl_2045 peptidase C56, PfpI YP_003117318.1 PFAM: ATP-binding region ATPase domain protein; KEGG: fre:Franean1_6225 PAS/PAC sensor protein YP_003117319.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: kra:Krad_0483 anti-sigma-factor antagonist YP_003117320.1 KEGG: stp:Strop_1767 hypothetical protein YP_003117321.1 PFAM: glutamate--cysteine ligase; KEGG: stp:Strop_2542 glutamate--cysteine ligase, GCS2 YP_003117322.1 KEGG: sco:SCO0759 hypothetical protein YP_003117323.1 SMART: zinc finger CDGSH-type domain protein; KEGG: sen:SACE_4173 hypothetical protein YP_003117324.1 TIGRFAM: methylase; PFAM: methyltransferase small; methyltransferase type 11; KEGG: sma:SAV_7194 methyltransferas YP_003117325.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: sco:SCO0686 hypothetical protein YP_003117326.1 KEGG: sma:SAV_5684 hypothetical protein YP_003117327.1 PFAM: cellulose-binding family II; Fibronectin type III domain protein; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: ote:Oter_3118 alpha-L-arabinofuranosidase- like protein YP_003117328.1 KEGG: sma:SAV_2169 hypothetical protein YP_003117329.1 PFAM: Curculin domain protein (mannose-binding) lectin; SMART: Curculin domain protein (mannose-binding) lectin; KEGG: bcm:Bcenmc03_1547 curculin domain-containing protein YP_003117330.1 PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold protein; KEGG: kra:Krad_2690 epocide hydrolase domain- containing protein YP_003117331.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: fra:Francci3_2445 periplasmic sensor signal transduction histidine kinase YP_003117332.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: tfu:Tfu_1941 response regulator receiver YP_003117333.1 KEGG: bcm:Bcenmc03_4448 hypothetical protein YP_003117334.1 PFAM: peptidase S41; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: sco:SCO2967 carboxy-terminal processing protease precursor YP_003117335.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: sco:SCO0545 secreted protein YP_003117336.1 PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 16; KEGG: ace:Acel_0129 carbohydrate-binding family 6 protein YP_003117337.1 KEGG: afl:Aflv_2026 transcriptional regulator, LacI family (HTH and periplasmic-binding domains); PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003117338.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: rru:Rru_A3070 AsnC family transcriptional regulator YP_003117339.1 PFAM: amino acid permease-associated region; KEGG: saq:Sare_2158 amino acid permease-associated region YP_003117341.1 PFAM: major facilitator superfamily MFS_1; KEGG: mpa:MAP1632c hypothetical protein YP_003117344.1 KEGG: ace:Acel_1718 secreted protein YP_003117345.1 PFAM: NB-ARC domain protein; TPR repeat-containing protein; hypothetical protein; Tetratricopeptide TPR_2 repeat protein; SMART: hypothetical protein; KEGG: sgr:SGR_3012 transcriptional regulator YP_003117346.1 PFAM: penicillin-binding protein transpeptidase; KEGG: sco:SCO3156 penicillin-binding protein (secreted protein) YP_003117347.1 KEGG: sco:SCO5155 lipoprotein YP_003117349.1 TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: radical SAM protein; KEGG: sco:SCO6766 hypothetical protein YP_003117350.1 KEGG: sen:SACE_4326 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate reductase, 4Fe-4S protein (partial match) YP_003117351.1 KEGG: sen:SACE_4327 squalene--hopene cyclase; TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; PFAM: prenyltransferase/squalene oxidase YP_003117352.1 PFAM: polyprenyl synthetase; KEGG: sen:SACE_4328 dimethylallyltranstransferase / geranyltranstransferase / geranylgeranyl pyrophosphate synthetase YP_003117353.1 TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; KEGG: sen:SACE_4329 squalene/phytoene dehydrogenase YP_003117354.1 TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: ace:Acel_1694 squalene/phytoene synthase YP_003117355.1 TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: sen:SACE_4331 squalene/phytoene synthase YP_003117356.1 PFAM: polysaccharide deacetylase; KEGG: sco:SCO1129 secreted deacetylase YP_003117357.1 KEGG: fal:FRAAL0509 glycosyl transferase YP_003117358.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: fra:Francci3_0224 NAD-dependent epimerase/dehydratase YP_003117359.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: fra:Francci3_0223 DegT/DnrJ/EryC1/StrS aminotransferase YP_003117360.1 PFAM: glycosyl transferase family 39; KEGG: kra:Krad_0362 glycosyl transferase YP_003117362.1 KEGG: sma:SAV_5590 hypothetical protein YP_003117363.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fre:Franean1_0089 ECF subfamily RNA polymerase sigma-24 factor YP_003117364.1 KEGG: predicted gene, 672682 YP_003117365.1 PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL5310 integral membrane transporter YP_003117366.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_4134 TetR family transcriptional regulator YP_003117367.1 PFAM: TetR family transcriptional regulator; KEGG: fre:Franean1_3217 TetR family transcriptional regulator YP_003117368.1 PFAM: aldo/keto reductase; KEGG: bur:Bcep18194_B1321 aldo/keto reductase YP_003117369.1 PFAM: cellulose-binding family II; glycosyl hydrolase BNR repeat-containing protein; SMART: cellulose-binding family II; KEGG: sco:SCO6545 secreted cellulase YP_003117370.1 KEGG: hau:Haur_2136 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 6; cellulose- binding family II; SMART: cellulose-binding family II YP_003117371.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: stp:Strop_0325 periplasmic binding protein/LacI transcriptional regulator YP_003117372.1 PFAM: cellulose-binding family II; glycoside hydrolase family 5; SMART: cellulose-binding family II; KEGG: sma:SAV_1854 endo-1,4-beta-glucanase YP_003117373.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: stp:Strop_3591 xylulokinase YP_003117374.1 catalyzes the interconversion of D-xylose to D-xylulose YP_003117375.1 PFAM: ROK family protein; KEGG: sco:SCO1171 xylose repressor YP_003117377.1 KEGG: sen:SACE_4271 hypothetical protein YP_003117378.1 KEGG: sma:SAV_5189 integral membrane protein YP_003117379.1 PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sco:SCO0605 AraC family transcription regulator YP_003117380.1 KEGG: sco:SCO6009 solute-binding protein YP_003117381.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_2246 ABC transporter ATP-binding protein YP_003117382.1 PFAM: inner-membrane translocator; KEGG: sma:SAV_2245 ABC transporter permease YP_003117383.1 KEGG: rha:RHA1_ro04493 hypothetical protein YP_003117385.1 SMART: helix-turn-helix domain protein; KEGG: sen:SACE_3375 helix-hairpin-helix DNA-binding motif-containing protein YP_003117386.1 PFAM: NUDIX hydrolase; KEGG: mpa:MAP2477c hypothetical protein YP_003117387.1 KEGG: pph:Ppha_2917 SEFIR domain protein YP_003117388.1 KEGG: sus:acid_2379 hypothetical protein YP_003117390.1 KEGG: npu:Npun_R3336 hypothetical protein YP_003117391.1 KEGG: fre:Franean1_5565 hypothetical protein YP_003117392.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO3653 two-component system regulator YP_003117393.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; ricin B lectin; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: mmi:MMAR_2576 serine/threonine-protein kinase transcriptional regulator PknK YP_003117394.1 KEGG: fal:FRAAL0895 hypothetical protein YP_003117395.1 PFAM: cell divisionFtsK/SpoIIIE; Forkhead- associated protein; SMART: Forkhead-associated protein; ATPase AAA; KEGG: sco:SCO4508 cell division-related protein YP_003117396.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sco:SCO3654 two-component system sensor kinase YP_003117397.1 PFAM: carbohydrate kinase FGGY; KEGG: sco:SCO0814 rhamnose kinase YP_003117398.1 TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; class II aldolase/adducin family protein; KR domain protein; KEGG: sco:SCO0813 short chain dehydrogenase YP_003117399.1 TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sco:SCO0812 sugar isomerase YP_003117400.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: sma:SAV_7422 LacI family transcriptional regulator YP_003117401.1 KEGG: nfa:nfa19490 hypothetical protein YP_003117402.1 PFAM: PfkB domain protein; KEGG: ace:Acel_0624 ribokinase-like domain- containing protein YP_003117403.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sgl:SG1486 short-chain dehydrogenase YP_003117404.1 PFAM: TetR family transcriptional regulator; KEGG: kra:Krad_2217 TetR family transcriptional regulator YP_003117405.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_6870 acetyltransferase YP_003117406.1 KEGG: rsa:RSal33209_0120 hypothetical protein YP_003117407.1 KEGG: rsa:RSal33209_0109 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003117408.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: atc:AGR_L_3399 hypothetical protein YP_003117409.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_1453 transmembrane lipoprotein LplB YP_003117410.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_1454 transmembrane lipoprotein LplC YP_003117411.1 PFAM: extracellular solute-binding protein family 1; KEGG: rsa:RSal33209_0117 ABC-type sugar transporter, periplasmic component YP_003117412.1 PFAM: polysaccharide lyase 8 alpha-helical; polysaccharide lyase family 8; KEGG: sgr:SGR_291 hyaluronidase YP_003117413.1 KEGG: sma:SAV_1407 hypothetical protein YP_003117414.1 KEGG: rsa:RSal33209_0108 hypothetical protein YP_003117415.1 KEGG: pfl:PFL_2503 hypothetical protein YP_003117416.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: sru:SRU_2716 antibiotic biosynthesis monooxygenase domain-containing protein YP_003117417.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sen:SACE_4594 ABC transporter sugar permease YP_003117418.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sen:SACE_4593 ABC transporter sugar permease YP_003117419.1 PFAM: extracellular solute-binding protein family 1; KEGG: sen:SACE_4592 ABC transporter sugar-binding protein YP_003117420.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: nca:Noca_0471 LacI family transcription regulator YP_003117421.1 PFAM: Amylo-alpha-16-glucosidase; KEGG: art:Arth_3761 amylo-alpha-1,6-glucosidase YP_003117422.1 SMART: hypothetical protein; KEGG: fal:FRAAL6340 WD-40 repeat-containing protein YP_003117423.1 PFAM: phosphatidylinositol-specific phospholipase C X region; SMART: phosphatidylinositol-specific phospholipase C X region; KEGG: sgr:SGR_3955 phosphatidyl inositol- specific phospholipase C YP_003117424.1 KEGG: sco:SCO1432 membrane protein YP_003117425.1 KEGG: sco:SCO7824 TetR family transcriptional regulator YP_003117426.1 KEGG: cmi:CMM_0897 hypothetical protein YP_003117427.1 PFAM: hypothetical protein; TPR repeat-containing protein; SMART: hypothetical protein; KEGG: bmj:BMULJ_00872 hypothetical protein YP_003117428.1 PFAM: protein of unknown function DUF1486; KEGG: sma:SAV_3997 hypothetical protein YP_003117429.1 SMART: phosphoesterase PHP domain protein; KEGG: sma:SAV_3795 secreted protein YP_003117430.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mbb:BCG_1465 transcriptional regulator YP_003117431.1 KEGG: sco:SCO3152 hypothetical protein YP_003117433.1 PFAM: protein of unknown function DUF574; KEGG: sco:SCO0929 hypothetical protein YP_003117434.1 KEGG: grail3.0065006801. YP_003117435.1 KEGG: GK18624 YP_003117437.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_003117438.1 PFAM: GCN5-related N-acetyltransferase; KEGG: scl:sce8188 acetyltransferase YP_003117439.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 1; KEGG: fal:FRAAL4284 multicopper oxidase; signal peptide YP_003117440.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: fal:FRAAL5952 diaminopimelate decarboxylase (DAP decarboxylase) YP_003117441.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: sco:SCO6489 hypothetical protein YP_003117442.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sgr:SGR_1154 M20/M25/M40 family peptidase YP_003117443.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sco:SCO6488 acyl-peptide hydrolase YP_003117444.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: sgr:SGR_773 decarboxylase YP_003117445.1 PFAM: D-aminoacylase domain protein; amidohydrolase; amidohydrolase; KEGG: mta:Moth_1302 dihydroorotase YP_003117446.1 KEGG: lxx:Lxx01020 beta-lactamase related protein YP_003117447.1 KEGG: kra:Krad_4500 coagulation factor 5/8 type domain-containing protein YP_003117448.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fal:FRAAL1328 RNA polymerase ECF-subfamily sigma factor YP_003117449.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sen:SACE_3883 LysR family transcriptional regulator YP_003117450.1 TIGRFAM: M6 family metalloprotease domain protein; KEGG: hypothetical protein YP_003117451.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO5503 acetyltransferase YP_003117452.1 PFAM: NLP/P60 protein; KEGG: sgr:SGR_2736 NLP/P60 family secreted protein YP_003117453.1 PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; KEGG: sco:SCO0700 ABC transporter protein ATP- binding protein YP_003117454.1 PFAM: sodium/calcium exchanger membrane region; KEGG: sma:SAV_6277 ionic transporter integral membrane protein YP_003117455.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV_1603 acyl-CoA synthetase, long-chain fatty acid:CoA ligase YP_003117456.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: sgr:SGR_5799 acyl-CoA dehydrogenase YP_003117458.1 KEGG: mkm:Mkms_1571 ABC transporter YP_003117459.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sma:SAV_2234 fatty acid oxidation complex alpha-subunit YP_003117460.1 KEGG: saq:Sare_1469 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: thiolase YP_003117461.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sma:SAV_4344 acyl carrier protein phosphodiesterase YP_003117462.1 PFAM: helix-turn-helix HxlR type; KEGG: ret:RHE_CH01028 transcriptional regulator protein YP_003117463.1 PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein; KEGG: sma:SAV_2231 ribonuclease D YP_003117464.1 PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sco:SCO6029 two-component regulator YP_003117465.1 KEGG: sco:SCO6030 hypothetical protein YP_003117466.1 KEGG: sgr:SGR_1473 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: uroporphyrinogen decarboxylase (URO-D) YP_003117467.1 KEGG: sgr:SGR_1470 protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase YP_003117468.1 PFAM: chlorite dismutase; KEGG: sco:SCO6042 hypothetical protein YP_003117471.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sen:SACE_6085 two-component response regulator YP_003117472.1 KEGG: pac:PPA0117 potassium-transporting ATPase C chain; TIGRFAM: potassium ABC transporter ATPase; PFAM: K transporting ATPase KdpC subunit YP_003117473.1 KEGG: fra:Francci3_3287 potassium-transporting ATPase subunit A; TIGRFAM: potassium-transporting ATPase subunit alpha; PFAM: K transporting ATPase subunit alpha YP_003117475.1 PFAM: amidohydrolase; KEGG: pfl:PFL_2478 hypothetical protein YP_003117476.1 PFAM: osmosensitive K channel His kinase sensor; ATP-binding region ATPase domain protein; UspA domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: fra:Francci3_3283 osmosensitive K+ channel signal transduction histidine kinase YP_003117477.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sen:SACE_6085 two-component response regulator YP_003117478.1 KEGG: swi:Swit_3496 hypothetical protein YP_003117479.1 PFAM: endoribonuclease L-PSP; KEGG: scl:sce6306 hypothetical protein YP_003117480.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: sco:SCO2569 hypothetical protein YP_003117481.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: sgr:SGR_6925 LysR family transcriptional regulator YP_003117482.1 PFAM: major facilitator superfamily MFS_1; KEGG: sen:SACE_3205 transmembrane efflux protein YP_003117483.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_003117484.1 PFAM: YhhN family protein; KEGG: sth:STH2103 hypothetical protein YP_003117485.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF472; protein of unknown function DUF471; KEGG: sma:SAV_6029 integral membrane protein YP_003117486.1 PFAM: peptidoglycan-binding protein; KEGG: sco:SCO2345 peptidodoglycan-binding membrane protein YP_003117487.1 KEGG: cur:cur_1817 Fe-S oxidoreductase YP_003117488.1 PFAM: peptidoglycan-binding protein; KEGG: predicted protein YP_003117489.1 PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding; KEGG: cms:CMS_2238 hypothetical protein YP_003117490.1 KEGG: sma:SAV_5789 hypothetical protein YP_003117491.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: nca:Noca_1990 (acyl-carrier-protein) S- malonyltransferase YP_003117492.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis YP_003117493.1 PFAM: phosphopantetheine-binding; KEGG: nca:Noca_1988 phosphopantetheine-binding YP_003117494.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase; KEGG: sco:SCO2390 3-oxoacyl-(ACP) synthase II YP_003117495.1 PFAM: carboxyl transferase; KEGG: nca:Noca_1986 propionyl-CoA carboxylase YP_003117496.1 PFAM: glycosidase PH1107-related; KEGG: tte:TTE0063 glycosylase YP_003117497.1 KEGG: sma:SAV_5987 hypothetical protein YP_003117498.1 KEGG: sgr:SGR_2124 ArsR family transcriptional regulator YP_003117499.1 PFAM: alpha/beta hydrolase fold protein-3 domain protein; KEGG: nar:Saro_1585 dienelactone hydrolase YP_003117500.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bxe:Bxe_B0570 LysR family transcriptional regulator YP_003117501.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: spe:Spro_1485 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003117502.1 KEGG: sma:SAV_5784 hypothetical protein YP_003117503.1 PFAM: TetR family transcriptional regulator; KEGG: pol:Bpro_4769 TetR family transcriptional regulator YP_003117504.1 KEGG: sco:SCO2454 integral membrane protein YP_003117505.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: nca:Noca_1946 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_003117506.1 KEGG: rha:RHA1_ro01206 hypothetical protein YP_003117507.1 PFAM: amidohydrolase; KEGG: sco:SCO4016 hypothetical protein YP_003117508.1 KEGG: gvi:gll4244 unknown protein YP_003117509.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sen:SACE_3357 GntR family transcriptional regulator YP_003117510.1 KEGG: rpc:RPC_3674 carbohydrate kinase, thermoresistant glucokinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase YP_003117511.1 TIGRFAM: gluconate transporter; PFAM: gluconate transporter; citrate transporter; KEGG: aau:AAur_2720 gluconate permease YP_003117512.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: sma:SAV_954 glutamate synthase(ferredoxin) YP_003117513.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_4401 acetyltransferase YP_003117515.1 SMART: helix-turn-helix domain protein; KEGG: rha:RHA1_ro01954 DNA binding protein YP_003117516.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NmrA family protein; KEGG: cbe:Cbei_3659 NAD-dependent epimerase/dehydratase YP_003117517.1 PFAM: beta-lactamase; KEGG: rha:RHA1_ro04284 hypothetical protein YP_003117518.1 KEGG: hypothetical protein YP_003117519.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rsa:RSal33209_2007 acetyltransferase YP_003117520.1 PFAM: protein of unknown function UPF0066; KEGG: hne:HNE_3413 hypothetical protein YP_003117521.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: scl:sce8812 short-chain dehydrogenase YP_003117522.1 KEGG: sco:SCO2461 secreted protein YP_003117523.1 PFAM: integrase family protein; KEGG: sco:SCO4615 integrase YP_003117524.1 PFAM: prophage CP4-57 regulator; KEGG: sco:SCO5348 excisionase YP_003117525.1 PFAM: RNA methylase; KEGG: sen:SACE_2307 hypothetical protein YP_003117526.1 PFAM: hypothetical protein; KEGG: fal:FRAAL0472 ATP/GTP binding protein (partial match) YP_003117527.1 KEGG: fra:Francci3_1689 hypothetical protein YP_003117528.1 KEGG: fre:Franean1_6725 hypothetical protein YP_003117529.1 KEGG: fre:Franean1_2742 hypothetical protein YP_003117530.1 KEGG: fra:Francci3_1692 hypothetical protein YP_003117531.1 KEGG: fre:Franean1_2744 type IV secretory pathway VirB4 protein-like protein YP_003117532.1 KEGG: fre:Franean1_6729 type IV secretory pathway VirD4 protein-like protein YP_003117533.1 KEGG: fre:Franean1_6730 hypothetical protein YP_003117536.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: fre:Franean1_6734 ATPase YP_003117537.1 KEGG: sco:SCO6864 hypothetical protein YP_003117540.1 KEGG: ade:Adeh_2513 ATP-dependent nuclease subunit B-like YP_003117544.1 KEGG: sma:SAV_5533 hypothetical protein YP_003117545.1 PFAM: glycoside hydrolase family 31; carbohydrate binding family 6; KEGG: cja:CJA_2872 alpha-glucosidase, , adg31A YP_003117546.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: hypothetical protein YP_003117547.1 PFAM: ricin B lectin; glycoside hydrolase family 76; SMART: ricin B lectin; KEGG: sma:SAV_627 glycosyl hydrolase YP_003117548.1 PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: sal:Sala_1017 beta-galactosidase YP_003117549.1 PFAM: extracellular solute-binding protein family 1; KEGG: bmj:BMULJ_01682 spermidine/putrescine transporter substrate-binding protein YP_003117550.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bms:BRA0809 ABC transporter ATP-binding protein YP_003117551.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: azc:AZC_3345 ABC transporter membrane spanning protein YP_003117552.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: azc:AZC_3346 ABC transporter permease YP_003117553.1 PFAM: ricin B lectin; SMART: ricin B lectin; KEGG: sma:SAV_1077 melibiase YP_003117554.1 PFAM: glycoside hydrolase clan GH-D; KEGG: sma:SAV_1077 melibiase YP_003117555.1 PFAM: glycoside hydrolase family 76; ricin B lectin; KEGG: bfr:BF0347 alpha-1,6-mannanase YP_003117556.1 KEGG: scl:sce6377 hypothetical protein YP_003117557.1 PFAM: glycoside hydrolase; ricin B lectin; Ig family protein; SMART: ricin B lectin; KEGG: hypothetical protein; K05349 beta- glucosidase YP_003117559.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: saq:Sare_2049 methyltransferase type 12 YP_003117560.1 PFAM: asparagine synthase; KEGG: reh:H16_A3223 hypothetical protein YP_003117562.1 KEGG: fre:Franean1_6151 transcriptional regulator YP_003117563.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; KEGG: tfu:Tfu_2484 HAD family hydrolase YP_003117566.1 PFAM: peptidoglycan-binding LysM; transcriptional activator domain; SMART: peptidoglycan-binding LysM; KEGG: fra:Francci3_1730 response regulator receiver/SARP domain-containing protein YP_003117567.1 KEGG: fre:Franean1_2588 hypothetical protein YP_003117568.1 PFAM: TadE family protein; KEGG: fra:Francci3_1732 TadE-like YP_003117569.1 KEGG: fra:Francci3_1733 hypothetical protein YP_003117571.1 KEGG: fra:Francci3_1734 type II secretion system protein YP_003117572.1 KEGG: fra:Francci3_1735 integral membrane protein YP_003117573.1 PFAM: type II secretion system protein E; KEGG: fre:Franean1_2594 type II secretion system protein E YP_003117574.1 KEGG: fre:Franean1_2595 hypothetical protein YP_003117575.1 PFAM: SAF domain protein; KEGG: fre:Franean1_2596 SAF domain-containing protein YP_003117576.1 KEGG: fra:Francci3_1739 ATP/GTP-binding protein YP_003117577.1 KEGG: fra:Francci3_1740 hypothetical protein YP_003117578.1 PFAM: aldo/keto reductase; KEGG: ace:Acel_1715 aldo/keto reductase YP_003117579.1 KEGG: blj:BLD_1057 hypothetical protein YP_003117580.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_3253 ABC-type sugar transport system, permease YP_003117581.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: aau:AAur_3252 ABC-type sugar transport system, permease YP_003117582.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3465 extracellular solute-binding protein, family 1 YP_003117583.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: sma:SAV_2569 LacI family transcriptional regulator YP_003117584.1 PFAM: glycoside hydrolase family 16; carbohydrate binding family 6; KEGG: sgr:SGR_6942 large multi-functional protein YP_003117585.1 PFAM: ricin B lectin; glycoside hydrolase family 5; SMART: ricin B lectin; KEGG: sma:SAV_2186 secreted alpha-galactosidase YP_003117586.1 KEGG: hypothetical protein YP_003117587.1 KEGG: scl:sce8398 hypothetical protein YP_003117588.1 KEGG: fal:FRAAL4830 alkanesulfonate monooxygenase, FMNH(2)-dependent YP_003117589.1 KEGG: bch:Bcen2424_0206 ATP-dependent OLD family endonuclease YP_003117590.1 KEGG: nca:Noca_4767 hypothetical protein YP_003117591.1 KEGG: rha:RHA1_ro09075 hypothetical protein YP_003117592.1 KEGG: nfa:pnf2550 hypothetical protein YP_003117593.1 PFAM: hypothetical protein; SMART: WD-40 repeat protein; KEGG: fra:Francci3_4184 hypothetical protein YP_003117594.1 PFAM: glycosyl transferase family 2; KEGG: tex:Teth514_1651 glycosyl transferase YP_003117595.1 KEGG: sma:SAV_2339 hypothetical protein YP_003117598.1 KEGG: fre:Franean1_6281 hypothetical protein YP_003117599.1 KEGG: lsp:Bsph_p024 hypothetical protein YP_003117600.1 PFAM: DNA polymerase beta domain protein region; KEGG: pla:Plav_1829 hypothetical protein YP_003117601.1 KEGG: rpe:RPE_2467 hypothetical protein YP_003117602.1 KEGG: pla:Plav_1827 hypothetical protein YP_003117603.1 PFAM: ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: pol:Bpro_5158 ATPase AAA, central region YP_003117604.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ana:alr1976 transcriptional regulator YP_003117605.1 PFAM: protein of unknown function DUF955; KEGG: bvi:Bcep1808_0173 hypothetical protein YP_003117606.1 PFAM: protein of unknown function DUF437; KEGG: ton:TON_1172 hypothetical protein YP_003117607.1 KEGG: npu:Npun_F0965 hypothetical protein YP_003117610.1 KEGG: hch:HCH_01125 hypothetical protein YP_003117611.1 KEGG: sma:SAV_1224 hydrolase YP_003117612.1 PFAM: sodium/hydrogen exchanger; KEGG: sgr:SGR_2268 sodium/proton antiporter YP_003117615.1 PFAM: ABC transporter; ABC-2 type transporter; SMART: ATPase AAA; KEGG: mav:MAV_3146 ABC transporter ATP-binding protein YP_003117616.1 KEGG: saq:Sare_1994 OmpA/MotB domain-containing protein YP_003117619.1 KEGG: tpa:TP0470 hypothetical protein YP_003117620.1 PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; KEGG: tfu:Tfu_2229 tyrosine protein kinase:serine/threonine protein kinase YP_003117622.1 KEGG: sma:SAV_3273 hypothetical protein YP_003117623.1 KEGG: fal:FRAAL1893 hypothetical protein YP_003117625.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: hypothetical protein YP_003117626.1 PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; KEGG: sco:SCO5506 regulatory protein YP_003117627.1 KEGG: fal:FRAAL0840 radical activating enzyme YP_003117628.1 KEGG: SNF2 superfamily protein YP_003117630.1 TIGRFAM: hypothetical protein; PFAM: YD repeat-containing protein; KEGG: sma:SAV_21 rhs protein YP_003117631.1 KEGG: bam:Bamb_5224 DNA helicase related protein YP_003117632.1 KEGG: aau:AAur_1070 hypothetical protein YP_003117633.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; KEGG: art:Arth_0862 ATPase associated with various cellular activities, AAA_5 YP_003117634.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sma:SAV_5624 two-component system response regulator YP_003117635.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sma:SAV_5623 two-component system sensor kinase YP_003117636.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fre:Franean1_1654 ABC transporter YP_003117637.1 PFAM: protein of unknown function DUF214; KEGG: fre:Franean1_1655 hypothetical protein YP_003117638.1 PFAM: ROK family protein; KEGG: sma:SAV_1081 transcriptional regulator YP_003117639.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sma:SAV_6307 trehalose-6-phosphate hydrolase YP_003117640.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: hau:Haur_1245 binding-protein-dependent transport systems inner membrane component YP_003117641.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: hau:Haur_1244 binding-protein-dependent transport systems inner membrane component YP_003117642.1 PFAM: extracellular solute-binding protein family 1; KEGG: hau:Haur_1243 extracellular solute-binding protein YP_003117643.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: mbb:BCG_2114c twin argininte translocase protein A YP_003117644.1 PFAM: cellulose-binding family II; Fibronectin type III domain protein; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: tpd:Teth39_0264 dextranase YP_003117645.1 PFAM: cellulose-binding family II; Fibronectin type III domain protein; carbohydrate binding family 6; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: fjo:Fjoh_4436 glucan 1,6-alpha-isomaltosidase YP_003117646.1 PFAM: phosphoribosylglycinamide synthetase; KEGG: scl:sce5191 hypothetical protein YP_003117647.1 KEGG: msm:MSMEG_3331 hypothetical protein YP_003117648.1 PFAM: Domain of unknown function DUF1793; ricin B lectin; SMART: ricin B lectin YP_003117650.1 KEGG: bpd:BURPS668_A2736 BNR/Asp-box repeat- containing protein YP_003117651.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sgr:SGR_204 two-component system response regulator YP_003117652.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: sgr:SGR_205 two-component system sensor kinase YP_003117653.1 PFAM: MMPL domain protein; KEGG: sgr:SGR_206 transmembrane transporter YP_003117654.1 PFAM: aldo/keto reductase; KEGG: sgr:SGR_855 oxidoreductase YP_003117655.1 SMART: helix-turn-helix domain protein; KEGG: sgr:SGR_6891 transcriptional regulator YP_003117656.1 KEGG: bur:Bcep18194_B2579 hypothetical protein YP_003117658.1 PFAM: protein of unknown function DUF344; KEGG: fal:FRAAL4412 hypothetical protein YP_003117659.1 catalyzes the formation of precorrin 6x from precorrin 5 YP_003117660.1 KEGG: fra:Francci3_1522 cobalt-precorrin-6x reductase; TIGRFAM: precorrin-6x reductase; PFAM: precorrin-6x reductase CbiJ/CobK YP_003117661.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sma:SAV_4511 LuxR family transcriptional regulator YP_003117662.1 KEGG: nfa:nfa27370 hypothetical protein YP_003117663.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ote:Oter_0056 ABC transporter YP_003117664.1 PFAM: ABC transporter; KEGG: gvi:glr3473 ABC-2 type transporter permease YP_003117665.1 PFAM: beta-ketoacyl synthase; KR domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: bpd:BURPS668_A1647 polyketide synthase, type I YP_003117666.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: rso:RSc0274 acyl CoA dehydrogenase oxidoreductase protein YP_003117667.1 PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fre:Franean1_4355 AraC family transcriptional regulator YP_003117668.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: fre:Franean1_4766 NAD-dependent epimerase/dehydratase YP_003117669.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi02301 CgeE YP_003117670.1 KEGG: scl:sce4939 hypothetical protein; TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_003117671.1 PFAM: beta-ketoacyl synthase; acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: hau:Haur_3965 beta-ketoacyl synthase YP_003117672.1 PFAM: beta-ketoacyl synthase; acyl transferase; KR domain protein; Erythronolide synthase docking; short- chain dehydrogenase/reductase SDR; phosphopantetheine- binding; KEGG: hau:Haur_3961 beta-ketoacyl synthase YP_003117673.1 PFAM: acyl transferase; KR domain protein; beta- ketoacyl synthase; Erythronolide synthase docking; short- chain dehydrogenase/reductase SDR; phosphopantetheine- binding; KEGG: stp:Strop_2768 beta-ketoacyl synthase YP_003117674.1 PFAM: short-chain dehydrogenase/reductase SDR; beta- ketoacyl synthase; KR domain protein; acyl transferase; Erythronolide synthase docking; phosphopantetheine- binding; NAD-dependent epimerase/dehydratase; KEGG: sma:SAV_418 modular polyketide synthase YP_003117675.1 PFAM: acyl transferase; short-chain dehydrogenase/reductase SDR; beta-ketoacyl synthase; KR domain protein; phosphopantetheine-binding; KEGG: sgr:SGR_6179 type-I PKS YP_003117676.1 PFAM: condensation domain protein; KEGG: sgr:SGR_5180 hypothetical protein YP_003117677.1 TIGRFAM: pyridoxal-dependent decarboxylase, exosortase system type 1 associated; PFAM: Orn/DAP/Arg decarboxylase 2; alanine racemase domain protein; KEGG: nmu:Nmul_A2669 Orn/DAP/Arg decarboxylase 2 YP_003117678.1 PFAM: condensation domain protein; KEGG: saq:Sare_0362 amino acid adenylation domain- containing protein YP_003117679.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: bcj:BCAL2248 4'-phosphopantetheinyl transferase superfamily protein YP_003117680.1 PFAM: thioesterase; KEGG: hau:Haur_3974 oleoyl-(acyl-carrier-protein) hydrolase YP_003117681.1 TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; KEGG: hau:Haur_3971 FkbH like protein YP_003117682.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: hau:Haur_3970 acyl-CoA dehydrogenase domain- containing protein YP_003117683.1 KEGG: hau:Haur_3969 hypothetical protein YP_003117684.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase NAD-binding; 3- hydroxyacyl-CoA dehydrogenase domain protein; KEGG: hau:Haur_3968 3-hydroxybutyryl-CoA dehydrogenase YP_003117685.1 TIGRFAM: acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA4297 AMP-generating CoA ligase YP_003117686.1 PFAM: phosphopantetheine-binding; KEGG: stp:Strop_0682 phosphopantetheine-binding YP_003117687.1 PFAM: DoxX family protein; KEGG: sma:SAV_5824 hypothetical protein YP_003117688.1 KEGG: sco:SCO0846 hypothetical protein YP_003117689.1 PFAM: OsmC family protein; KEGG: bbt:BBta_2873 hypothetical protein YP_003117691.1 PFAM: carbohydrate kinase FGGY; KEGG: sgr:SGR_5070 sugar kinase YP_003117692.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: sma:SAV_5679 RNA polymerase sigma factor YP_003117693.1 KEGG: ace:Acel_0806 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; DNA primase DnaG DnaB-binding; Toprim sub domain protein YP_003117694.1 KEGG: sco:SCO2470 deoxyguanosinetriphosphate triphosphohydrolase-like protein; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003117695.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: rsh:Rsph17029_3523 ethyl tert-butyl ether degradation EthD YP_003117696.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_003117697.1 PFAM: protein of unknown function DUF664; KEGG: sgr:SGR_5793 hypothetical protein YP_003117698.1 PFAM: pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone; KEGG: sus:acid_4533 pyrrolo-quinoline quinone YP_003117699.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_003117700.1 PFAM: YceI family protein; KEGG: sma:SAV_2706 hypothetical protein YP_003117701.1 TIGRFAM: hypothetical protein; PFAM: dihydrouridine synthase; KEGG: saq:Sare_3809 nifR3 family TIM-barrel protein YP_003117703.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003117704.1 PFAM: periplasmic solute binding protein; KEGG: sco:SCO2505 ABC-transporter metal-binding lipoprotein YP_003117705.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sma:SAV_5633 manganese/zinc transporter ABC transporter ATP-binding protein YP_003117706.1 KEGG: scl:sce0819 polyketide synthase YP_003117707.1 PFAM: ABC transporter; KEGG: sco:SCO2507 metal transport ABC transporter YP_003117708.1 PFAM: ferric-uptake regulator; KEGG: sma:SAV_5631 metal uptake regulation protein YP_003117709.1 KEGG: kra:Krad_3373 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_003117710.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_003117711.1 KEGG: sma:SAV_5602 hypothetical protein YP_003117712.1 KEGG: kra:Krad_3377 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain YP_003117713.1 PFAM: peptidase M4 thermolysin; peptidase M4 thermolysin; KEGG: sco:SCO2529 metalloprotease YP_003117714.1 KEGG: saq:Sare_0306 GCN5-related N- acetyltransferase YP_003117715.1 KEGG: sma:SAV_4529 hypothetical protein YP_003117716.1 TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: sma:SAV_5595 GTP-binding protein Era YP_003117717.1 KEGG: sma:SAV_5589 hypothetical protein YP_003117718.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; SMART: CBS domain containing protein; KEGG: nca:Noca_1914 CBS domain-containing protein YP_003117719.1 PFAM: protein of unknown function UPF0054; KEGG: sma:SAV_5584 metalloprotease YP_003117720.1 PFAM: PhoH family protein; KEGG: sco:SCO2532 PhoH-like protein YP_003117721.1 KEGG: rha:RHA1_ro08617 hypothetical protein YP_003117722.1 KEGG: rha:RHA1_ro08616 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase YP_003117723.1 PFAM: histidine triad (HIT) protein; KEGG: sgr:SGR_4997 Hit-family protein YP_003117724.1 KEGG: sma:SAV_4147 hypothetical protein YP_003117725.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bsu:BSU40290 hypothetical protein YP_003117726.1 KEGG: fra:Francci3_3417 hypothetical protein YP_003117727.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_003117728.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_003117729.1 negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_003117730.1 PFAM: beta-lactamase; KEGG: saq:Sare_3260 beta-lactamase domain- containing protein YP_003117731.1 KEGG: sgr:SGR_4991 hypothetical protein YP_003117732.1 KEGG: aau:AAur_0782 hypothetical protein YP_003117733.1 PFAM: MOSC domain containing protein; KEGG: fal:FRAAL3663 hypothetical protein YP_003117734.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_003117735.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: saq:Sare_2906 short-chain dehydrogenase/reductase SDR YP_003117736.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_4232 hypothetical protein YP_003117737.1 KEGG: sus:acid_3116 hypothetical protein YP_003117738.1 KEGG: dra:DR_B0100 hypothetical protein YP_003117739.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: scl:sce0152 polynucleotide adenyltransferase YP_003117740.1 PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: fra:Francci3_0288 phenazine biosynthesis PhzC/PhzF protein YP_003117741.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_003117742.1 TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: sco:SCO2563 30S ribosomal protein S20 YP_003117743.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; protein of unknown function RIO1; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: tfu:Tfu_1756 tyrosine protein kinase:serine/threonine protein kinase YP_003117744.1 TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III delta; KEGG: sco:SCO2564 DNA-binding protein YP_003117745.1 TIGRFAM: HhH-GPD family protein; PFAM: HhH-GPD family protein; KEGG: sco:SCO4047 hypothetical protein YP_003117746.1 KEGG: stp:Strop_3708 hypothetical protein YP_003117747.1 PFAM: beta-lactamase; KEGG: sgr:SGR_4977 integral membrane protein YP_003117748.1 TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: sco:SCO2567 integral membrane protein YP_003117749.1 KEGG: fal:FRAAL1997 DNA-binding protein YP_003117750.1 PFAM: transposase mutator type; KEGG: sma:SAV_347 IS256 family transposase YP_003117751.1 TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: sgr:SGR_1724 ATP/GTP-binding protein YP_003117752.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sma:SAV_2505 DNA-binding protein YP_003117753.1 PFAM: transcriptional activator domain; TPR repeat- containing protein; NB-ARC domain protein; transcriptional regulator domain protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: sco:SCO4426 regulatory protein YP_003117754.1 PFAM: peptidase S41; WD40 domain protein beta Propeller; SMART: peptidase S41; KEGG: sma:SAV_5574 protease YP_003117755.1 PFAM: peptidase S41; SMART: peptidase S41; KEGG: sma:SAV_5574 protease YP_003117756.1 KEGG: mmi:MMAR_2116 PE-PGRS family protein YP_003117757.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rru:Rru_A3411 XRE family transcriptional regulator YP_003117758.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: msm:MSMEG_2449 methylmalonate-semialdehyde dehydrogenase YP_003117759.1 KEGG: saq:Sare_4952 hypothetical protein YP_003117760.1 PFAM: FAD dependent oxidoreductase; KEGG: sco:SCO5671 oxidoreductase YP_003117761.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO5670 polyamine ABC-transporter integral memb rane protein YP_003117762.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sgr:SGR_1835 polyamine ABC transporter permease YP_003117763.1 PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: sma:SAV_2590 polyamine ABC transporter ATP- binding protein YP_003117764.1 PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV_2591 ABC transporter polyamine- binding lipoprotein YP_003117765.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation YP_003117766.1 PFAM: purine catabolism PurC domain protein; KEGG: stp:Strop_3007 purine catabolism PurC domain- containing protein YP_003117767.1 PFAM: methyltransferase type 11; Tellurite resistance methyltransferase, TehB, core; methyltransferase type 12; KEGG: fre:Franean1_2456 methyltransferase type 11 YP_003117768.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: fre:Franean1_6190 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003117769.1 PFAM: NUDIX hydrolase; KEGG: pzu:PHZ_c0948 mutator MutT protein YP_003117770.1 PFAM: silent information regulator protein Sir2; KEGG: nfa:nfa44580 Sir2 family regulator YP_003117771.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sgr:SGR_5508 AraC family transcriptional regulator YP_003117772.1 PFAM: glycoside hydrolase family 35; glycoside hydrolase family 42 domain protein; KEGG: sen:SACE_0306 beta-galactosidase YP_003117773.1 KEGG: stp:Strop_4129 hypothetical protein YP_003117774.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: stp:Strop_4130 ABC transporter YP_003117775.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: sma:SAV_5623 two-component system sensor kinase YP_003117776.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sma:SAV_5624 two-component system response regulator YP_003117778.1 KEGG: hypothetical protein; K01202 galactosylceramidase; PFAM: glycoside hydrolase family 59; ricin B lectin; SMART: ricin B lectin YP_003117779.1 KEGG: sco:SCO2204 hypothetical protein YP_003117780.1 KEGG: kra:Krad_3966 hypothetical protein YP_003117781.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_003117782.1 PFAM: nitroreductase; KEGG: saq:Sare_0515 nitroreductase YP_003117783.1 PFAM: inositol monophosphatase; KEGG: sgr:SGR_1204 inositol monophosphatase YP_003117784.1 PFAM: ArsR family transcriptional regulator; TrmB family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: nfa:nfa30870 transcriptional regulator YP_003117785.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: nfa:nfa30860 hypothetical protein YP_003117786.1 TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: scl:sce9115 fumarate hydratase YP_003117787.1 KEGG: lsl:LSL_0487 integral membrane protein YP_003117788.1 PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_1471 major facilitator transporter YP_003117789.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: stp:Strop_1822 ArsR family transcriptional regulator YP_003117790.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: mav:MAV_0673 cell envelope-related function transcriptional attenuator domain protein YP_003117791.1 KEGG: rca:Rcas_2595 membrane protein protein YP_003117792.1 KEGG: NEWSINFRUG00000134300. YP_003117793.1 TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: nfa:nfa22150 sigma factor YP_003117794.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nfa:nfa28110 oxidoreductase YP_003117795.1 KEGG: bja:blr0750 hypothetical protein YP_003117796.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mlo:mlr4398 transcription regulator YP_003117797.1 PFAM: TetR family transcriptional regulator; KEGG: kra:Krad_2619 TetR family transcriptional regulator YP_003117798.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sco:SCO0636 ABC transporter ATP-binding protein YP_003117799.1 KEGG: nfa:nfa32200 hypothetical protein YP_003117800.1 KEGG: sco:SCO4455 integral membrane protein YP_003117801.1 PFAM: Tannase and feruloyl esterase; KEGG: hypothetical protein YP_003117802.1 KEGG: sco:SCO7121 secreted protein YP_003117803.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sma:SAV_1523 lyase YP_003117804.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sma:SAV_667 oxidoreductase YP_003117805.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO0512 regulatory protein YP_003117806.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sco:SCO0511 dehydrogenase (secreted protein) YP_003117807.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO0728 regulatory protein YP_003117808.1 PFAM: amidohydrolase; KEGG: mab:MAB_0299 amidohydrolase (aminocarboxymuconate-semialdehyde decarboxylase) YP_003117809.1 PFAM: protein of unknown function DUF937; KEGG: mms:mma_0219 hypothetical protein YP_003117810.1 KEGG: fra:Francci3_0910 recombinase YP_003117811.1 PFAM: coagulation factor 5/8 type domain protein; KEGG: sgr:SGR_5535 hypothetical protein YP_003117812.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: fjo:Fjoh_3835 amine oxidase YP_003117813.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO0295 transmembrane efflux protein YP_003117814.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO0296 transcriptional regulator YP_003117815.1 PFAM: alpha/beta hydrolase fold protein; KEGG: rle:pRL100270 proline iminopeptidase YP_003117816.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO5914 transcriptional regulator YP_003117817.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_3150 ABC transporter transmembrane protein BldKA YP_003117818.1 PFAM: extracellular solute-binding protein family 5; KEGG: sma:SAV_3151 ABC transporter protein BldKB YP_003117819.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_3152 ABC transporter transmembrane protein BldKC YP_003117820.1 KEGG: sma:SAV_3153 ABC transporter intracellular ATPase BldKD; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003117821.1 KEGG: sma:SAV_3154 ABC transporter ATP-binding protein BldKE; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003117822.1 PFAM: peptidase M9A collagenase domain protein; PKD domain containing protein; peptidase M9 domain; peptidase domain protein; SMART: PKD domain containing protein; KEGG: sco:SCO5912 secreted protease YP_003117824.1 KEGG: sgr:SGR_312 hypothetical protein YP_003117825.1 PFAM: glucodextranase N; glycoside hydrolase 15- related; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: bid:Bind_3431 glucan 1,4-alpha-glucosidase YP_003117826.1 PFAM: glucodextranase N; glycoside hydrolase 15- related; KEGG: bid:Bind_3431 glucan 1,4-alpha-glucosidase YP_003117827.1 KEGG: stp:Strop_3689 hypothetical protein YP_003117828.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nca:Noca_0892 ABC transporter YP_003117829.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; KEGG: sgr:SGR_5343 two-component system sensor kinase YP_003117830.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sma:SAV_6039 two-component system response regulator YP_003117832.1 KEGG: lin:lin0531 transmembrane protein YP_003117833.1 KEGG: nca:Noca_2941 hypothetical protein YP_003117834.1 KEGG: sco:SCO5530 hypothetical protein YP_003117837.1 KEGG: sma:SAV_1154 hypothetical protein YP_003117838.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sma:SAV_1157 serine/threonine protein kinase YP_003117839.1 KEGG: sma:SAV_1158 hypothetical protein YP_003117840.1 PFAM: ABC transporter; ABC transporter; Forkhead-associated protein; SMART: ATPase AAA; Forkhead-associated protein; KEGG: sma:SAV_1159 ABC transporter ATP-binding protein YP_003117842.1 PFAM: Lanthionine synthetase C family protein; aminoglycoside phosphotransferase; protein of unknown function RIO1; SMART: serine/threonine protein kinase; KEGG: sgr:SGR_2397 AmfT protein YP_003117843.1 PFAM: flavoprotein; KEGG: pde:Pden_1605 flavoprotein YP_003117844.1 PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL0560 multidrug resistance protein YP_003117845.1 PFAM: regulatory protein LuxR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein LuxR; KEGG: fal:FRAAL4359 transcriptional regulator YP_003117847.1 KEGG: protein of unknown function; serine/threonine rich and highly similar to YOL155C, a glucan alpha-1,4-glucosidase; transcript is induced in both high and low pH environments; YIL169C is a non-essential gene YP_003117849.1 KEGG: sgr:SGR_531 hypothetical protein YP_003117850.1 PFAM: CsbD family protein; KEGG: scl:sce0440 hypothetical protein YP_003117851.1 KEGG: stp:Strop_2947 hypothetical protein YP_003117852.1 KEGG: Os03g0634500; hypothetical protein YP_003117853.1 PFAM: hemerythrin HHE cation binding domain protein; KEGG: sco:SCO7371 hypothetical protein YP_003117854.1 KEGG: fre:Franean1_2195 secreted protein YP_003117855.1 PFAM: ATP-binding region ATPase domain protein; KEGG: fra:Francci3_0218 serine/threonine kinase anti-sigma factor YP_003117856.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 4 domain protein; KEGG: fra:Francci3_3755 sigma 28 subunit YP_003117857.1 KEGG: sma:SAV_3012 anti-sigma factor YP_003117858.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: tfu:Tfu_3055 anti-sigma factor antagonist YP_003117859.1 PFAM: lipolytic protein G-D-S-L family; Fibronectin type III domain protein; KEGG: tfu:Tfu_2470 fibronectin, type III YP_003117860.1 KEGG: lxx:Lxx21740 hypothetical protein YP_003117861.1 KEGG: mav:MAV_0315 hypothetical protein YP_003117862.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: sco:SCO0747 hypothetical protein YP_003117863.1 PFAM: short-chain dehydrogenase/reductase SDR; NADP oxidoreductase coenzyme F420-dependent; KEGG: gdi:GDI2727 hypothetical protein YP_003117864.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fre:Franean1_4765 AraC family transcriptional regulator YP_003117865.1 KEGG: swd:Swoo_0390 hypothetical protein YP_003117866.1 KEGG: stp:Strop_4405 chitinase; PFAM: glycoside hydrolase family 19; carbohydrate- binding family V/XII; SMART: carbohydrate-binding family V/XII YP_003117867.1 PFAM: NmrA family protein; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: fal:FRAAL5520 hydroxylase YP_003117868.1 PFAM: glycoside hydrolase, family 20, catalytic core; KEGG: sgr:SGR_1319 sugar hydrolase YP_003117869.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_3020 sugar ABC transporter permease YP_003117870.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO5233 sugar transporter integral membrane protein YP_003117871.1 PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO5232 sugar transporter sugar binding protein YP_003117872.1 PFAM: type 3a cellulose-binding domain protein; KEGG: sco:SCO0535 hydrolase (secreted protein) YP_003117873.1 PFAM: UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sgr:SGR_1315 GntR family transcriptional regulator YP_003117874.1 TIGRFAM: chorismate mutase; PFAM: chorismate mutase; KEGG: cmi:CMM_0710 hypothetical protein YP_003117875.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_6542 TetR family transcriptional regulator YP_003117876.1 PFAM: cupin; KEGG: bmc:BAbS19_II07150 cupin domain protein YP_003117877.1 PFAM: Ig family protein; KEGG: sma:SAV_5630 neutral zinc metalloprotease YP_003117878.1 PFAM: aminotransferase class-III; KEGG: sgr:SGR_959 aminotransferase YP_003117879.1 PFAM: Clp domain protein; KEGG: cms:CMS_0112 Clp family ATP-binding protease YP_003117880.1 KEGG: sen:SACE_0031 hypothetical protein YP_003117883.1 KEGG: sco:SCO2768 hypothetical protein YP_003117884.1 KEGG: sma:SAV_3773 hypothetical protein YP_003117886.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: fre:Franean1_5506 Crp/FNR family transcriptional regulator YP_003117887.1 PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: sen:SACE_2844 hypothetical protein YP_003117888.1 KEGG: mucin-associated surface protein (MASP) YP_003117889.1 KEGG: efa:EF1098 hypothetical protein YP_003117890.1 PFAM: ROK family protein; KEGG: sco:SCO0794 transcriptional regulator YP_003117891.1 PFAM: ricin B lectin; glycoside hydrolase family 30; SMART: ricin B lectin; KEGG: sma:SAV_2709 glycosyl hydrolase YP_003117892.1 KEGG: sma:SAV_1407 hypothetical protein YP_003117893.1 PFAM: glycoside hydrolase clan GH-D; KEGG: sma:SAV_1077 melibiase YP_003117894.1 PFAM: alpha/beta hydrolase fold protein; KEGG: krh:KRH_11120 hypothetical protein YP_003117895.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sgr:SGR_3388 MarR family transcriptional regulator YP_003117896.1 PFAM: small multidrug resistance protein; KEGG: pau:PA14_54110 transporter YP_003117897.1 PFAM: small multidrug resistance protein; KEGG: pap:PSPA7_4733 transporter YP_003117899.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: fra:Francci3_1837 hypothetical protein YP_003117900.1 KEGG: sma:SAV_6913 hypothetical protein YP_003117901.1 PFAM: amino acid permease-associated region; KEGG: sma:SAV_6914 amino acid permease YP_003117902.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_1229 acetyltransferase YP_003117903.1 PFAM: MMPL domain protein; KEGG: mgi:Mflv_5232 membrane transporter YP_003117904.1 PFAM: lipolytic protein G-D-S-L family; KEGG: sma:SAV_6577 secreted hydrolase YP_003117905.1 PFAM: FAD linked oxidase; Cytokinin dehydrogenase 1 FAD and cytokinin binding; KEGG: mxa:MXAN_6144 oxygen-dependent FAD- linked oxidoreductase YP_003117906.1 PFAM: methyltransferase type 12; methyltransferase type 11; KEGG: tfu:Tfu_1751 methyltransferase YP_003117907.1 PFAM: stage II sporulation E family protein; GAF domain protein; ATP-binding region ATPase domain protein; SMART: protein phosphatase 2C domain protein; KEGG: tfu:Tfu_1752 protein phosphatase 2C-like YP_003117908.1 PFAM: major facilitator superfamily MFS_1; KEGG: mbn:Mboo_0388 major facilitator transporter YP_003117909.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fal:FRAAL5327 MarR family transcriptional regulator YP_003117911.1 KEGG: sma:SAV_3901 hypothetical protein YP_003117912.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sco:SCO5458 lipoprotein YP_003117914.1 PFAM: ricin B lectin; glycoside hydrolase family 16; SMART: ricin B lectin; KEGG: ace:Acel_0129 carbohydrate-binding family 6 protein YP_003117915.1 KEGG: hypothetical protein YP_003117917.1 KEGG: stp:Strop_4498 hypothetical protein YP_003117918.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fre:Franean1_0089 ECF subfamily RNA polymerase sigma-24 factor YP_003117919.1 PFAM: monooxygenase FAD-binding; KEGG: fal:FRAAL0529 oxidoreductase (partial match) YP_003117920.1 PFAM: TetR family transcriptional regulator; KEGG: nfa:nfa31250 transcriptional regulator YP_003117921.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: fal:FRAAL3688 zinc-binding dehydrogenase YP_003117922.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sen:SACE_4410 hypothetical protein YP_003117923.1 PFAM: NUDIX hydrolase; KEGG: sen:SACE_3815 NUDIX hydrolase YP_003117924.1 PFAM: cytochrome P450; KEGG: sen:SACE_3525 cytochrome P450 CYP125 YP_003117925.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_7082 acetyltransferase YP_003117926.1 PFAM: phosphoglycerate mutase; KEGG: sma:SAV_5481 phosphoglycerate mutase YP_003117927.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: sco:SCO2577 hypothetical protein YP_003117928.1 KEGG: sma:SAV_5479 hypothetical protein YP_003117929.1 KEGG: sma:SAV_5478 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003117930.1 KEGG: sma:SAV_5477 hypothetical protein YP_003117932.1 PFAM: peptidase M48 Ste24p; KEGG: sco:SCO2582 hypothetical protein YP_003117933.1 KEGG: nca:Noca_4686 hypothetical protein YP_003117934.1 TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: aldehyde dehydrogenase; KEGG: saq:Sare_0456 gamma-glutamyl phosphate reductase YP_003117935.1 KEGG: bja:bll3019 hypothetical protein YP_003117936.1 PFAM: transcription activator effector binding; regulatory protein MerR; transcription regulator MerR DNA binding; SMART: regulatory protein MerR; KEGG: kra:Krad_2735 MerR family transcriptional regulator YP_003117937.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; regulatory protein LuxR; sigma-70 region 4 domain protein; KEGG: sen:SACE_1454 RNA polymerase ECF sigma factor YP_003117939.1 KEGG: sgr:SGR_4960 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein YP_003117940.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_003117941.1 involved in the peptidyltransferase reaction during translation YP_003117942.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: sgr:SGR_4953 50S ribosomal protein L21 YP_003117943.1 TIGRFAM: ribonuclease, Rne/Rng family; SMART: RNA binding S1 domain protein; KEGG: sgr:SGR_4940 hypothetical protein YP_003117944.1 KEGG: sma:SAV_5464 hypothetical protein YP_003117945.1 PFAM: cell wall binding repeat 2- containing protein; KEGG: ace:Acel_1679 protease-like YP_003117946.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transporter; xanthine/uracil/vitamin C permease; KEGG: rha:RHA1_ro01572 benzoate membrane transporter BenE YP_003117947.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sen:SACE_2013 DNA-binding protein YP_003117948.1 KEGG: sen:SACE_0764 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein YP_003117949.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: sma:SAV_3574 galactokinase YP_003117950.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sma:SAV_5461 hypothetical protein YP_003117951.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: sgr:SGR_4935 Sfr protein YP_003117952.1 KEGG: sma:SAV_5458 penicillin-binding protein; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003117953.1 TIGRFAM: rod shape-determining protein MreD; KEGG: sco:SCO2609 rod shape-determining protein YP_003117954.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_003117955.1 functions in MreBCD complex in some organisms YP_003117956.1 KEGG: mva:Mvan_5447 phosphoesterase, PA-phosphatase related YP_003117958.1 KEGG: sgr:SGR_4929 hypothetical protein YP_003117959.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sma:SAV_5452 folylpolyglutamate synthase YP_003117960.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_003117961.1 PFAM: PemK family protein; KEGG: sen:SACE_1313 hypothetical protein YP_003117962.1 KEGG: mva:Mvan_1145 CopG family transcriptional regulator YP_003117963.1 KEGG: fra:Francci3_1207 ATP-dependent protease ATP- binding subunit; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpX; PFAM: ATPase AAA; zinc finger C4 domain protein; AAA ATPase central domain protein; SMART: ATPase AAA YP_003117964.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_003117965.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_003117966.1 TIGRFAM: trigger factor; PFAM: trigger factor domain; trigger factor domain protein; peptidylprolyl isomerase FKBP-type; KEGG: sma:SAV_5446 trigger factor YP_003117967.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_5148 GCN5-related N- acetyltransferase YP_003117969.1 KEGG: sco:SCO0101 hypothetical protein YP_003117970.1 PFAM: aldehyde dehydrogenase; KEGG: sgr:SGR_5794 aldehyde dehydrogenase YP_003117971.1 KEGG: ace:Acel_1530 MmpL domain-containing protein YP_003117972.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_003117973.1 PFAM: stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sgr:SGR_4917 hypothetical protein YP_003117974.1 PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: fre:Franean1_3662 DNA-(apurinic or apyrimidinic site) lyase YP_003117976.1 KEGG: nfa:nfa20620 hypothetical protein YP_003117977.1 KEGG: ade:Adeh_3226 hypothetical protein YP_003117978.1 KEGG: gme:Gmet_0665 hypothetical protein YP_003117979.1 PFAM: protein of unknown function DUF955; helix- turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: fra:Francci3_0882 hypothetical protein YP_003117980.1 KEGG: mab:MAB_0437c hypothetical protein YP_003117983.1 KEGG: cau:Caur_0723 hypothetical protein YP_003117984.1 KEGG: cau:Caur_0722 hypothetical protein YP_003117985.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: cau:Caur_0721 D12 class N6 adenine-specific DNA methyltransferase YP_003117986.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fra:Francci3_2888 haloacid dehalogenase-like hydrolase YP_003117989.1 KEGG: fra:Francci3_2889 DNA-binding protein YP_003117990.1 PFAM: ATP-binding region ATPase domain protein; KEGG: tfu:Tfu_2295 hypothetical protein YP_003117991.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: eca:ECA0965 regulatory protein YP_003117994.1 KEGG: MUC20; mucin 20 YP_003118000.1 KEGG: fra:Francci3_0906 type IV secretory pathway VirD4 components-like YP_003118001.1 KEGG: fra:Francci3_0907 hypothetical protein YP_003118002.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: fra:Francci3_2345 DNA methylase N-4/N-6 YP_003118003.1 PFAM: DSBA oxidoreductase; KEGG: kra:Krad_3524 hypothetical protein YP_003118004.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: sma:SAV_5395 aminopeptidase N YP_003118005.1 KEGG: stp:Strop_3518 hypothetical protein YP_003118006.1 KEGG: ace:Acel_1600 hypothetical protein YP_003118007.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: sgr:SGR_4876 endonuclease YP_003118008.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: ace:Acel_1604 prolyl oligopeptidase YP_003118009.1 PFAM: Luciferase-like monooxygenase; KEGG: fre:Franean1_1675 luciferase family protein YP_003118010.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sco:SCO2656 hypothetical protein YP_003118011.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: stp:Strop_3622 ABC transporter YP_003118012.1 PFAM: ABC transporter; KEGG: stp:Strop_3623 ABC-2 type transporter YP_003118013.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: rxy:Rxyl_0159 periplasmic sensor signal transduction histidine kinase YP_003118014.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sgr:SGR_204 two-component system response regulator YP_003118015.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: sen:SACE_4416 pyridoxamine 5'-phosphate oxidase-related,FMN-binding protein YP_003118016.1 PFAM: ROK family protein; KEGG: sco:SCO2657 transcriptional regulator YP_003118017.1 PFAM: glycoside hydrolase family 4; KEGG: sgr:SGR_4870 sugar hydrolase YP_003118018.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: sgr:SGR_4869 kinase YP_003118019.1 PFAM: OsmC family protein; KEGG: nca:Noca_1377 OsmC family protein YP_003118020.1 KEGG: cms:CMS_2170 integral membrane protein YP_003118021.1 PFAM: globin; KEGG: ace:Acel_1609 globin YP_003118022.1 KEGG: fre:Franean1_0708 hypothetical protein YP_003118023.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sen:SACE_4003 regulatory protein, MarR YP_003118024.1 PFAM: YceI family protein; KEGG: sma:SAV_1183 hypothetical protein YP_003118025.1 KEGG: sma:SAV_5369 hypothetical protein YP_003118026.1 PFAM: thioesterase superfamily protein; KEGG: sgr:SGR_4854 hypothetical protein YP_003118027.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_003118028.1 KEGG: scl:sce3939 hypothetical protein YP_003118029.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: aau:AAur_2400 single-strand binding protein (ssb) (helix-destabilizing protein) YP_003118030.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sen:SACE_3478 fatty-acid--CoA ligase YP_003118031.1 KEGG: tfu:Tfu_0824 hypothetical protein YP_003118032.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: sma:SAV_7580 camphor resistance protein CrcB YP_003118033.1 PFAM: Camphor resistance CrcB protein; KEGG: sma:SAV_1942 camphor resistance protein CrcB YP_003118034.1 KEGG: cvi:CV_0909 non-hemolytic phospholipase C precursor; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756; coagulation factor 5/8 type domain protein; SMART: coagulation factor 5/8 type domain protein YP_003118036.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_2408 transmembrane efflux protein YP_003118037.1 TIGRFAM: FAD-linked oxidoreductase; PFAM: D-arabinono-14-lactone oxidase; FAD linked oxidase; KEGG: sma:SAV_2409 FAD-dependent oxidoreductase YP_003118038.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: sco:SCO6102 nitrite/sulphite reductase YP_003118039.1 KEGG: sma:SAV_2128 hypothetical protein YP_003118040.1 PFAM: glycoside hydrolase family 25; SMART: glycoside hydrolase family 25; KEGG: rha:RHA1_ro08409 glycosyl hydrolase YP_003118041.1 KEGG: mjl:Mjls_3551 hypothetical protein YP_003118042.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sen:SACE_1218 pyruvate dehydrogenase YP_003118043.1 PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO6463 hypothetical protein YP_003118044.1 TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: sgr:SGR_1393 phosphoadenosine phosphosulfate reductase YP_003118045.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_003118046.1 KEGG: sgr:SGR_1396 sulfate adenylyltransferase subunit 1; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_003118047.1 TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; KEGG: art:Arth_3780 NlpA lipoprotein YP_003118048.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sgr:SGR_1398 ABC-type sulfate transporter ATP-binding protein YP_003118049.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sgr:SGR_1399 ABC-type sulfate transporter permease YP_003118050.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: sco:SCO6093 secreted protein YP_003118051.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sen:SACE_2164 quinone oxidoreductase YP_003118053.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cmi:CMM_0772 acetyltransferase YP_003118054.1 PFAM: protein of unknown function DUF344; KEGG: nca:Noca_2345 hypothetical protein YP_003118055.1 PFAM: AFG1-family ATPase; KEGG: sma:SAV_2207 ATP/GTP-binding protein YP_003118056.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: sgr:SGR_1458 hydrolase YP_003118057.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; KEGG: sen:SACE_1845 peptide methionine sulfoxide reductase YP_003118058.1 KEGG: GK21299 YP_003118059.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sco:SCO5818 ABC transporter YP_003118062.1 PFAM: NUDIX hydrolase; KEGG: sco:SCO5817 DNA hydrolase YP_003118063.1 KEGG: pac:PPA0029 hypothetical protein YP_003118064.1 PFAM: oxidoreductase molybdopterin binding; KEGG: fre:Franean1_6515 oxidoreductase molybdopterin binding YP_003118065.1 KEGG: sma:SAV_6625 hypothetical protein YP_003118066.1 KEGG: gsu:GSU0370 hypothetical protein YP_003118067.1 KEGG: proteophosphoglycan 5 YP_003118068.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sen:SACE_0761 two-component system response regulator YP_003118069.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ace:Acel_1594 periplasmic sensor signal transduction histidine kinase YP_003118070.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: fre:Franean1_7239 peptidase S1 and S6 chymotrypsin/Hap YP_003118071.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: sco:SCO2193 lipoyltransferase YP_003118073.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_003118075.1 KEGG: sma:SAV_6007 integral membrane protein YP_003118076.1 PFAM: RDD domain containing protein; KEGG: sgr:SGR_5316 hypothetical protein YP_003118077.1 TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: ace:Acel_0923 L-glutamine synthetase YP_003118078.1 KEGG: sma:SAV_5694 hypothetical protein YP_003118079.1 KEGG: sma:SAV_5694 hypothetical protein YP_003118081.1 PFAM: LmbE family protein; KEGG: sco:SCO7632 hypothetical protein YP_003118082.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; response regulator receiver; KEGG: kra:Krad_4217 two component LuxR family transcriptional regulator YP_003118083.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: saq:Sare_4861 histidine kinase YP_003118084.1 PFAM: hypothetical protein; KEGG: stp:Strop_2460 abortive infection protein YP_003118085.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: fra:Francci3_0359 serine/threonine protein kinase YP_003118086.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: saq:Sare_1429 ABC transporter YP_003118087.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: fre:Franean1_5339 binding-protein-dependent transporters inner membrane component YP_003118088.1 PFAM: extracellular solute-binding protein family 1; KEGG: bxe:Bxe_B1835 ABC Fe+3 transporter periplasmic ligand binding protein YP_003118089.1 PFAM: Luciferase-like monooxygenase; KEGG: rxy:Rxyl_0211 luciferase-like protein YP_003118090.1 KEGG: saq:Sare_4956 monooxygenase, FAD-binding YP_003118091.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpt:Bpet2935 transmembrane efflux protein YP_003118092.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: sco:SCO7661 secreted protein YP_003118093.1 KEGG: amr:AM1_C0053 hypothetical protein YP_003118094.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: rha:RHA1_ro01495 alanine dehydrogenase YP_003118095.1 PFAM: glycosyl transferase group 1; KEGG: fre:Franean1_0542 glycosyl transferase group 1 YP_003118096.1 KEGG: xop:PXO_02671 Xanthomonas adhesin-like protein A YP_003118097.1 PFAM: MMPL domain protein; KEGG: sco:SCO6091 integral membrane protein YP_003118098.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO5957 transporter YP_003118099.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO5956 regulatory protein YP_003118102.1 KEGG: fal:FRAAL2217 hypothetical protein YP_003118104.1 PFAM: aldo/keto reductase; KEGG: rha:RHA1_ro00240 aryl-alcohol dehydrogenase (NADP+) YP_003118105.1 PFAM: AraC-type transcriptional regulator; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rha:RHA1_ro00241 AraC family transcriptional regulator YP_003118106.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sgr:SGR_5942 3-hydroxyacyl-CoA dehydrogenase YP_003118107.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: msm:MSMEG_4076 butyryl-CoA dehydrogenase YP_003118108.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: msm:MSMEG_4076 butyryl-CoA dehydrogenase YP_003118109.1 PFAM: CoA-binding protein; KEGG: rha:RHA1_ro03613 succinate--CoA ligase (ADP- forming) YP_003118110.1 KEGG: fal:FRAAL3825 ferredoxin (partial) YP_003118111.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: mjl:Mjls_3703 respiratory-chain NADH dehydrogenase domain-containing protein YP_003118113.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sal:Sala_3165 Rieske (2Fe-2S) region YP_003118114.1 PFAM: TetR family transcriptional regulator; KEGG: sen:SACE_3864 TetR family transcriptional regulator YP_003118115.1 PFAM: extracellular solute-binding protein family 1; KEGG: hmo:HM1_2279 spermidine/putrescine ABC transporter spermidine/putrescine-binding protein YP_003118116.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rxy:Rxyl_2914 binding-protein-dependent transport systems inner membrane component YP_003118117.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: nwi:Nwi_1008 binding-protein dependent transport system inner membrane protein YP_003118118.1 KEGG: tfu:Tfu_0280 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; transport-associated OB domain protein; SMART: ATPase AAA YP_003118119.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rha:RHA1_ro05606 putrescine oxidase YP_003118120.1 PFAM: aldehyde dehydrogenase; KEGG: rxy:Rxyl_2917 aldehyde dehydrogenase YP_003118121.1 PFAM: fatty acid hydroxylase; KEGG: mab:MAB_3019 fatty acid hydroxylase YP_003118122.1 PFAM: GntR family transcriptional regulator; GntR domain protein; SMART: GntR family transcriptional regulator; KEGG: nca:Noca_0011 GntR family transcriptional regulator YP_003118124.1 KEGG: nca:Noca_0051 hypothetical protein YP_003118125.1 KEGG: sma:SAV_5907 hypothetical protein YP_003118127.1 PFAM: Ig family protein; peptidase S8 and S53 subtilisin kexin sedolisin; carbohydrate-binding family V/XII; SMART: carbohydrate-binding family V/XII; KEGG: dac:Daci_3662 Ig family protein YP_003118128.1 PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: Muc19; mucin 19 YP_003118129.1 KEGG: sma:SAV_2224 lipoprotein YP_003118130.1 KEGG: sma:SAV_6290 hypothetical protein YP_003118131.1 KEGG: sgr:SGR_5567 hypothetical protein YP_003118132.1 KEGG: sgr:SGR_5568 hypothetical protein YP_003118133.1 KEGG: sma:SAV_6300 electron transporter YP_003118134.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sma:SAV_4447 cold shock protein YP_003118135.1 PFAM: protein of unknown function DUF88; KEGG: hypothetical protein YP_003118136.1 KEGG: sde:Sde_0325 dihydroxy-acid dehydratase YP_003118137.1 PFAM: carboxymuconolactone decarboxylase; KEGG: vei:Veis_1856 carboxymuconolactone decarboxylase YP_003118138.1 PFAM: TetR family transcriptional regulator; KEGG: nca:Noca_3441 TetR family transcriptional regulator YP_003118139.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_3698 transmembrane efflux protein YP_003118140.1 KEGG: mmi:MMAR_0535 hypothetical protein YP_003118141.1 KEGG: sma:SAV_696 hypothetical protein YP_003118142.1 PFAM: Limonene-12-epoxide hydrolase; KEGG: bsu:BSU06870 hypothetical protein YP_003118143.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: nfa:nfa29660 transcriptional regulator YP_003118144.1 PFAM: alpha-L-arabinofuranosidase B catalytic; KEGG: hypothetical protein YP_003118145.1 PFAM: carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: hau:Haur_1518 coagulation factor 5/8 type domain-containing protein YP_003118146.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: pfo:Pfl01_3909 zinc-containing alcohol dehydrogenase superfamily protein YP_003118147.1 KEGG: fra:Francci3_3403 iron permease FTR1 YP_003118148.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: fra:Francci3_3404 Tat-translocated enzyme YP_003118149.1 PFAM: phosphoesterase; KEGG: cjk:jk0010 acid phosphatase YP_003118150.1 KEGG: fal:FRAAL0482 arylesterase-like YP_003118151.1 PFAM: transcription factor WhiB; KEGG: sco:SCO4767 regulatory protein YP_003118152.1 KEGG: sgr:SGR_2696 hypothetical protein YP_003118153.1 KEGG: nfa:nfa53500 transcriptional regulator YP_003118154.1 KEGG: pla:Plav_2405 carboxymuconolactone decarboxylase YP_003118155.1 PFAM: helix-turn-helix HxlR type; KEGG: pla:Plav_2404 HxlR family transcriptional regulator YP_003118157.1 PFAM: Alginate lyase 2; ricin B lectin; SMART: ricin B lectin; KEGG: sma:SAV_802 hypothetical protein YP_003118158.1 KEGG: fre:Franean1_1863 hypothetical protein YP_003118159.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: gvi:gll2825 quinone oxidoreductase YP_003118160.1 PFAM: TetR family transcriptional regulator; KEGG: ank:AnaeK_1572 TetR family transcriptional regulator YP_003118161.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: fal:FRAAL2257 oxidoreductase YP_003118162.1 PFAM: glycoside hydrolase family 8; KEGG: hau:Haur_2431 licheninase YP_003118163.1 PFAM: glycoside hydrolase family 2 sugar binding; KEGG: sma:SAV_1223 beta-mannosidase YP_003118164.1 KEGG: art:Arth_4338 hypothetical protein YP_003118165.1 KEGG: GI15407 gene product from transcript GI15407- RA YP_003118166.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sma:SAV_700 ECF subfamily RNA polymerase sigma factor YP_003118167.1 PFAM: PDZ/DHR/GLGF domain protein; peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: sco:SCO2171 secreted protease YP_003118168.1 PFAM: cupin; KEGG: sco:SCO1737 hypothetical protein YP_003118169.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sen:SACE_1607 MarR family transcriptional regulator YP_003118171.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dra:DR_1396 hypothetical protein YP_003118173.1 PFAM: protein of unknown function DUF1275; KEGG: sma:SAV_5843 hypothetical protein YP_003118175.1 KEGG: sen:SACE_1855 transmembrane protein YP_003118177.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sen:SACE_2927 SARP family transcriptional regulator YP_003118178.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; KEGG: sma:SAV_6359 hypothetical protein YP_003118179.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate YP_003118180.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ypb:YPTS_0533 binding-protein-dependent transport systems inner membrane component YP_003118181.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_0481 binding-protein-dependent transport systems inner membrane component YP_003118182.1 PFAM: extracellular solute-binding protein family 1; KEGG: ypb:YPTS_0531 extracellular solute-binding protein YP_003118183.1 PFAM: transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: cms:CMS_2349 IclR family transcriptional regulator YP_003118184.1 KEGG: bsu:BSU35830 hypothetical protein; TIGRFAM: sugar transporter; PFAM: general substrate transporter; major facilitator superfamily MFS_1 YP_003118185.1 KEGG: sco:SCO4207 hypothetical protein YP_003118186.1 KEGG: sen:SACE_4355 transcription regulator ArsR YP_003118187.1 PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_4810 major facilitator transporter YP_003118188.1 KEGG: sgr:SGR_6314 hypothetical protein YP_003118190.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_5587 transmembrane efflux protein YP_003118191.1 SMART: helix-turn-helix domain protein; KEGG: sco:SCO2537 DNA-binding protein YP_003118192.1 KEGG: sen:SACE_3372 hypothetical protein YP_003118193.1 KEGG: sen:SACE_3373 hypothetical protein YP_003118194.1 KEGG: sen:SACE_3374 hypothetical protein YP_003118195.1 SMART: helix-turn-helix domain protein; KEGG: sen:SACE_3375 helix-hairpin-helix DNA-binding motif-containing protein YP_003118196.1 KEGG: ank:AnaeK_3016 hypothetical protein YP_003118197.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: afw:Anae109_1667 UBA/ThiF-type NAD/FAD binding protein YP_003118198.1 KEGG: kra:Krad_3693 hypothetical protein YP_003118200.1 PFAM: glycosidase PH1107-related; KEGG: cth:Cthe_3112 glycosidase, PH1107-related YP_003118201.1 PFAM: MHYT domain protein; KEGG: nfa:nfa37600 hypothetical protein YP_003118202.1 PFAM: glycosyl transferase group 1; KEGG: swi:Swit_2577 glycosyl transferase, group 1 YP_003118204.1 KEGG: tfu:Tfu_1426 hypothetical protein YP_003118205.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sen:SACE_3687 3-oxoacyl-[acyl-carrier- protein] reductase YP_003118206.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sen:SACE_3686 MarR family transcriptional regulator YP_003118207.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sma:SAV_5032 transcriptional regulator YP_003118208.1 KEGG: stp:Strop_3388 hypothetical protein YP_003118209.1 KEGG: fal:FRAAL3891 secreted protein YP_003118210.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_003118212.1 PFAM: FAD dependent oxidoreductase; KEGG: gvi:glr4245 hypothetical protein YP_003118213.1 PFAM: protein of unknown function UPF0118; KEGG: rha:RHA1_ro08572 hypothetical protein YP_003118214.1 PFAM: chaperonin Cpn10; KEGG: sma:SAV_5178 GroES family molecular chaperone YP_003118215.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; redoxin; KEGG: nca:Noca_1326 redoxin domain-containing protein YP_003118216.1 KEGG: kra:Krad_0029 hypothetical protein YP_003118217.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: sco:SCO2902 hypothetical protein YP_003118218.1 KEGG: NEWSINFRUG00000140398; K04498 E1A/CREB-binding protein YP_003118219.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_003118220.1 KEGG: sco:SCO6059 hypothetical protein YP_003118221.1 PFAM: beta-lactamase; KEGG: sco:SCO2908 hypothetical protein YP_003118222.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_003118223.1 KEGG: sen:SACE_3835 hypothetical protein YP_003118224.1 KEGG: predicted protein YP_003118225.1 TIGRFAM: cysteine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; KEGG: tfu:Tfu_2368 cysteine synthase YP_003118226.1 PFAM: thiamineS protein; KEGG: tfu:Tfu_2369 hypothetical protein YP_003118227.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_003118228.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sma:SAV_2970 two-component system response regulator YP_003118229.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: kra:Krad_1229 integral membrane sensor signal transduction histidine kinase YP_003118230.1 kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth YP_003118231.1 KEGG: sco:SCO5267 hypothetical protein YP_003118232.1 KEGG: sco:SCO5265 hypothetical protein YP_003118233.1 PFAM: transcriptional regulator PadR family protein; KEGG: sgr:SGR_2230 PadR-like family transcriptional regulator YP_003118234.1 KEGG: fibrocystin-L-like protein YP_003118235.1 KEGG: zgc:165656 YP_003118236.1 KEGG: pmo:Pmob_1447 uncharacterized protein-like protein YP_003118237.1 SMART: ATPase AAA; KEGG: lfe:LAF_1809 hypothetical protein YP_003118238.1 KEGG: mgi:Mflv_4441 short chain dehydrogenase YP_003118239.1 SMART: Leucine-rich repeat, ribonuclease inhibitor subtype; KEGG: hypothetical protein YP_003118240.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV_2980 dehydrogenase YP_003118241.1 KEGG: stp:Strop_1592 hypothetical protein YP_003118242.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro00919 major facilitator superfamily multidrug resistance protein YP_003118243.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bay:RBAM_003310 YcgE YP_003118244.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: sgr:SGR_1988 aldehyde dehydrogenase YP_003118245.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sgr:SGR_4534 phosphatase YP_003118246.1 KEGG: sgr:SGR_4533 hypothetical protein YP_003118247.1 PFAM: patatin; KEGG: fra:Francci3_0775 patatin YP_003118248.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF472; KEGG: ace:Acel_0206 hypothetical protein YP_003118249.1 KEGG: hypothetical protein YP_003118250.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_003118251.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_4530 acetyltransferase YP_003118252.1 PFAM: protein of unknown function DUF1006; KEGG: sgr:SGR_4529 hypothetical protein YP_003118254.1 PFAM: response regulator receiver; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO3008 two-component system response regulator YP_003118255.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: sma:SAV_5067 hypothetical protein YP_003118256.1 KEGG: sma:SAV_5066 hypothetical protein YP_003118257.1 KEGG: sco:SCO3011 lipoprotein LpqB YP_003118258.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sco:SCO3012 two-component system histidine kinase YP_003118259.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sco:SCO3013 two-component system response regulator YP_003118260.1 KEGG: sco:SCO3015 integral membrane protein YP_003118261.1 KEGG: sgr:SGR_4520 integral membrane protein YP_003118262.1 KEGG: sma:SAV_5059 secreted protein YP_003118263.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; SMART: AAA ATPase; KEGG: kra:Krad_3819 ATPase YP_003118264.1 PFAM: protein of unknown function DUF58; KEGG: sma:SAV_5057 hypothetical protein YP_003118265.1 PFAM: protein of unknown function DUF95 transmembrane; KEGG: sma:SAV_5056 hypothetical protein YP_003118266.1 PFAM: RDD domain containing protein; KEGG: sma:SAV_5055 hypothetical protein YP_003118267.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_003118268.1 PFAM: protein of unknown function DUF343; KEGG: sgr:SGR_4509 hypothetical protein YP_003118269.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: sma:SAV_5048 phosphomannomutase/phosphoglucomutase YP_003118270.1 KEGG: sgr:SGR_4507 hypothetical protein YP_003118271.1 KEGG: sma:SAV_5045 hypothetical protein YP_003118272.1 KEGG: sgr:SGR_4505 secreted protein YP_003118273.1 PFAM: glycosyl transferase family 2; KEGG: sgr:SGR_4504 hypothetical protein YP_003118274.1 PFAM: transcription factor WhiB; KEGG: sgr:SGR_4503 WhiB family transcriptional regulator YP_003118276.1 catalyzes the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP from actyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) YP_003118277.1 catalyzes the addition of gamma linked glutamate to 7,8-didemethyl-8-hydroxy-5-deazariboflavin coenzyme F420-0) YP_003118278.1 KEGG: mva:Mvan_4267 hypothetical protein YP_003118279.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fre:Franean1_3989 MarR family transcriptional regulator YP_003118280.1 KEGG: sma:SAV_5038 hypothetical protein YP_003118281.1 PFAM: nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: sgr:SGR_4497 nucleotide phosphorylase YP_003118282.1 KEGG: sgr:SGR_4495 hypothetical protein YP_003118283.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: kra:Krad_0030 cell envelope-related transcriptional attenuator YP_003118284.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sgr:SGR_4494 transcriptional regulator YP_003118285.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: fre:Franean1_3648 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_003118286.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ACAD10; acyl-Coenzyme A dehydrogenase family, member 10 YP_003118287.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; NAD- dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: sgr:SGR_4944 UDP-N-acetyl-D- mannosaminuronic acid dehydrogenase YP_003118288.1 PFAM: glycosyl transferase family 2; KEGG: spe:Spro_2885 glycosyl transferase YP_003118289.1 PFAM: NUDIX hydrolase; KEGG: sco:SCO5930 NTP pyrophosphohydrolase YP_003118290.1 KEGG: ace:Acel_0439 hypothetical protein YP_003118291.1 PFAM: glycosyl transferase group 1; KEGG: rru:Rru_A2121 hypothetical protein YP_003118292.1 KEGG: plt:Plut_0173 hypothetical protein YP_003118293.1 PFAM: glycosyl transferase family 2; KEGG: tfu:Tfu_2523 fused dolichol-phosphate mannosyltransferase/uncharacterized protein YP_003118294.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: sgr:SGR_4942 NAD-dependent dehydrogenase YP_003118295.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: saq:Sare_1683 glutamine--scyllo-inositol transaminase YP_003118296.1 KEGG: aau:AAur_2679 acetyltransferase YP_003118297.1 PFAM: glycosyl transferase group 1; KEGG: cvi:CV_4120 glycosyltransferase YP_003118298.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cbk:CLL_A3247 O-antigen export system ATP- binding protein RfbB YP_003118299.1 PFAM: ABC transporter; KEGG: sco:SCO6757 ABC transporter membrane component YP_003118300.1 PFAM: glycosyl transferase group 1; KEGG: saq:Sare_1689 glycosyl transferase group 1 YP_003118301.1 KEGG: rca:Rcas_4131 glycosyl transferase YP_003118304.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sma:SAV_86 erythropoiesis-stimulating protein YP_003118305.1 KEGG: fra:Francci3_1309 UDP-glucose/GDP-mannose dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase YP_003118306.1 KEGG: fra:Francci3_1308 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_003118307.1 PFAM: glycosyl transferase group 1; KEGG: stp:Strop_1691 glycosyl transferase, group 1 YP_003118308.1 KEGG: saq:Sare_1685 glycosyl transferase group 1 YP_003118309.1 PFAM: glycosyl transferase group 1; KEGG: saq:Sare_1687 glycosyl transferase group 1 YP_003118310.1 PFAM: protein of unknown function DUF820; KEGG: fra:Francci3_2128 hypothetical protein YP_003118311.1 KEGG: saq:Sare_1685 glycosyl transferase group 1 YP_003118313.1 PFAM: glycosyl transferase group 1; KEGG: mmp:MMP1080 glycosyl transferase, group 1 YP_003118314.1 PFAM: glycosyl transferase family 2; KEGG: sma:SAV_5031 glycosyl transferase YP_003118315.1 KEGG: msm:MSMEG_2897 hypothetical protein YP_003118316.1 PFAM: thioesterase superfamily protein; KEGG: sco:SCO3049 acyl-CoA hydrolase YP_003118317.1 KEGG: nph:NP1840A hypothetical protein YP_003118318.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: mva:Mvan_4641 deaminase-reductase domain- containing protein YP_003118320.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_003118321.1 PFAM: glutaminase, core; KEGG: sma:SAV_1314 glutaminase YP_003118322.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: kra:Krad_4262 integral membrane sensor signal transduction histidine kinase YP_003118323.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: kra:Krad_4263 two component LuxR family transcriptional regulator YP_003118324.1 KEGG: nca:Noca_0921 ABC transporter; TIGRFAM: phosphate ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA YP_003118325.1 PFAM: peptidase C60 sortase A and B; KEGG: nca:Noca_0919 peptidase C60, sortase A and B YP_003118326.1 KEGG: nca:Noca_0917 phosphate ABC transporter periplasmic phosphate-binding protein YP_003118327.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: nca:Noca_0916 phosphate ABC transporter inner membrane subunit PstA YP_003118328.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: nca:Noca_0915 phosphate ABC transporter inner membrane subunit PstC YP_003118329.1 KEGG: nca:Noca_0918 hypothetical protein YP_003118330.1 KEGG: gur:Gura_0756 polymorphic outer membrane protein YP_003118331.1 KEGG: nca:Noca_0920 phosphate ABC transporter periplasmic protein YP_003118334.1 KEGG: hma:rrnAC2817 hypothetical protein YP_003118335.1 KEGG: sma:SAV_5025 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase YP_003118336.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: sma:SAV_4877 2-oxoglutarate ferredoxin oxidoreductase, subunit alpha YP_003118337.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: sco:SCO4594 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_003118338.1 PFAM: nucleic acid binding OB-fold tRNA/helicase- type; KEGG: ace:Acel_1194 nucleic acid binding, OB-fold, tRNA/helicase-type YP_003118339.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: sco:SCO4592 integral membrane protein YP_003118340.1 PFAM: regulatory protein MarR; KEGG: sco:SCO0940 MarR family regulatory protein YP_003118341.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sco:SCO0939 hydrolase YP_003118342.1 PFAM: polyprenyl synthetase; KEGG: sgr:SGR_2964 polyprenyl diphosphate synthase YP_003118343.1 Catalyzes the transfer of electrons from NADH to quinone YP_003118344.1 KEGG: rha:RHA1_ro05921 NADH dehydrogenase subunit M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_003118345.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_003118346.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: msm:MSMEG_2053 NADH-quinone oxidoreductase, K subunit YP_003118347.1 Catalyzes the transfer of electrons from NADH to quinone YP_003118348.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sgr:SGR_2976 NADH dehydrogenase chain I YP_003118349.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sma:SAV_4844 NADH dehydrogenase subunit H YP_003118350.1 Catalyzes the transfer of electrons from NADH to quinone YP_003118351.1 KEGG: rha:RHA1_ro05914 NADH dehydrogenase subunit F; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_003118352.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: sgr:SGR_2980 NADH dehydrogenase chain E YP_003118353.1 Catalyzes the transfer of electrons from NADH to quinone YP_003118354.1 Catalyzes the transfer of electrons from NADH to quinone YP_003118355.1 KEGG: nfa:nfa26660 NADH dehydrogenase subunit B; TIGRFAM: NADH-quinone oxidoreductase subunit beta; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_003118356.1 Catalyzes the transfer of electrons from NADH to quinone YP_003118357.1 KEGG: hypothetical LOC727727 YP_003118358.1 KEGG: lil:LA2450 outermembrane protein; PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype YP_003118359.1 PFAM: aminoglycoside phosphotransferase; KEGG: mab:MAB_4482 phosphotransferase YP_003118360.1 KEGG: hau:Haur_3716 hypothetical protein YP_003118361.1 PFAM: Luciferase-like monooxygenase; KEGG: stp:Strop_0085 luciferase family protein YP_003118362.1 PFAM: N-acetyltransferase; KEGG: ret:RHE_PE00167 probable arylamine N- acetyltransferase protein YP_003118363.1 KEGG: stp:Strop_2883 WGR domain-containing protein YP_003118364.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: phosphomannomutase; KEGG: pac:PPA2023 hypothetical protein YP_003118365.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: sco:SCO5261 malate oxidoreductase YP_003118366.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: kra:Krad_1224 extracellular solute-binding protein YP_003118367.1 TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: fal:FRAAL5987 amino acid ABC transporter membrane protein YP_003118368.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sco:SCO5258 ATP-binding protein YP_003118369.1 PFAM: protein of unknown function DUF1470; KEGG: sgr:SGR_2243 hypothetical protein YP_003118370.1 TIGRFAM: nickel-type superoxide dismutase maturation protease; PFAM: peptidase S24 and S26 domain protein; KEGG: sco:SCO5255 signal peptidase protein YP_003118371.1 KEGG: nca:Noca_1725 superoxide dismutase; TIGRFAM: superoxide dismutase, Ni; PFAM: superoxide dismutase Ni-type YP_003118372.1 KEGG: sgr:SGR_2270 anti-sigma factor YP_003118373.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 4 domain protein; KEGG: sgr:SGR_2271 RNA polymerase sigma factor YP_003118374.1 KEGG: sma:SAV_3014 integral membrane protein YP_003118375.1 PFAM: diacylglycerol kinase; SMART: diacylglycerol kinase; KEGG: sgr:SGR_2273 hypothetical protein YP_003118376.1 PFAM: transcription factor WhiB; KEGG: kra:Krad_3795 transcription factor WhiB YP_003118377.1 PFAM: histidine kinase dimerisation/phosphoacceptor; ATP-binding region ATPase domain protein; hypothetical protein; KEGG: sma:SAV_3017 two-component system sensor kinase YP_003118378.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_003118379.1 KEGG: ace:Acel_0557 N-acetylglucosamine 6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_003118380.1 KEGG: fre:Franean1_4164 hypothetical protein YP_003118381.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: saq:Sare_0800 ECF subfamily RNA polymerase sigma-24 factor YP_003118382.1 PFAM: sugar isomerase (SIS); KEGG: sgr:SGR_2276 phosphosugar isomerases YP_003118383.1 PFAM: glycoside hydrolase; KEGG: sma:SAV_3019 beta-N-acetylhexosaminidase YP_003118384.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_3020 sugar ABC transporter permease YP_003118385.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ace:Acel_0553 binding-protein-dependent transport systems inner membrane component YP_003118386.1 PFAM: extracellular solute-binding protein family 1; KEGG: ace:Acel_0552 extracellular solute-binding protein YP_003118387.1 PFAM: UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sgr:SGR_2282 GntR family transcriptional regulator YP_003118388.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_003118389.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine YP_003118390.1 SMART: helix-turn-helix domain protein; KEGG: sma:SAV_3315 DNA-binding protein YP_003118391.1 PFAM: aldo/keto reductase; KEGG: acr:Acry_2829 aldo/keto reductase YP_003118392.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aau:AAur_2401 acetyltransferase, GNAT family protein YP_003118393.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: nca:Noca_1710 hypothetical protein YP_003118395.1 PFAM: methyltransferase type 12; KEGG: nfa:nfa22790 hypothetical protein YP_003118396.1 KEGG: nca:Noca_1708 thioesterase superfamily protein YP_003118397.1 KEGG: fre:Franean1_0966 hypothetical protein YP_003118398.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: saq:Sare_4093 biotin/lipoyl attachment domain- containing protein YP_003118399.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: tfu:Tfu_0551 lipoprotein YP_003118400.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tfu:Tfu_0550 metal-dependent phosphohydrolase, HD region YP_003118401.1 TIGRFAM: anti-sigma factor; KEGG: sma:SAV_3037 anti-sigma factor YP_003118402.1 TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sco:SCO5216 RNA polymerase sigma factor RpoE YP_003118403.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_003118404.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase II; KEGG: nca:Noca_3188 tRNA pseudouridine synthase B YP_003118405.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_003118406.1 PFAM: protein of unknown function DUF503; KEGG: sma:SAV_2550 hypothetical protein YP_003118407.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_003118408.1 PFAM: protein of unknown function DUF448; KEGG: fre:Franean1_1181 hypothetical protein YP_003118409.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: aau:AAur_3818 ArsR family transcriptional regulator YP_003118410.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: aau:AAur_3816 hypothetical protein YP_003118411.1 KEGG: rha:RHA1_ro08454 hypothetical protein YP_003118412.1 SMART: helix-turn-helix domain protein; KEGG: art:Arth_0266 XRE family transcriptional regulator YP_003118413.1 PFAM: protein of unknown function DUF336; KEGG: met:M446_6273 hypothetical protein YP_003118414.1 KEGG: sco:SCO5704 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein YP_003118415.1 PFAM: protein of unknown function DUF150; KEGG: stp:Strop_1367 hypothetical protein YP_003118416.1 KEGG: sco:SCO5702 lipoprotein YP_003118417.1 KEGG: sma:SAV_2556 hypothetical protein YP_003118418.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: rca:Rcas_0577 serine/threonine protein kinase YP_003118419.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_003118420.1 KEGG: sgr:SGR_5819 hypothetical protein YP_003118421.1 PFAM: Ada metal-binding domain protein; AlkA domain protein; HhH-GPD family protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; KEGG: stp:Strop_3783 alcohol dehydrogenase YP_003118422.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: saq:Sare_4164 methylated-DNA--protein- cysteine methyltransferase YP_003118423.1 KEGG: fra:Francci3_1398 SARP family transcriptional regulator YP_003118424.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_1820 acetyltransferase YP_003118425.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_003118426.1 PFAM: peptidase M50; KEGG: saq:Sare_1303 peptidase M50 YP_003118427.1 KEGG: sgr:SGR_1823 1-deoxy-D-xylulose 5- phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein YP_003118428.1 KEGG: sgr:SGR_2365 hypothetical protein YP_003118429.1 PFAM: MaoC domain protein dehydratase; KEGG: fre:Franean1_4032 dehydratase YP_003118430.1 KEGG: sma:SAV_3392 hypothetical protein YP_003118432.1 PFAM: alpha/beta hydrolase fold protein; KEGG: rha:RHA1_ro03731 alpha/beta hydrolase YP_003118433.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: sma:SAV_1915 acyl-CoA dehydrogenase YP_003118434.1 PFAM: HpcH/HpaI aldolase; KEGG: sgr:SGR_1172 lyase YP_003118435.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: saq:Sare_0667 hypothetical protein YP_003118436.1 KEGG: sma:SAV_3108 hypothetical protein YP_003118437.1 KEGG: sgr:SGR_853 integral membrane protein YP_003118438.1 catalyzes the formation of inosine from adenosine YP_003118439.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: msm:MSMEG_3380 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_003118440.1 KEGG: ace:Acel_1120 peptide ABC transporter ATPase; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003118441.1 KEGG: ace:Acel_1119 peptide ABC transporter ATPase; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003118442.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ace:Acel_1118 binding-protein-dependent transport systems inner membrane component YP_003118443.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: ace:Acel_1117 binding-protein-dependent transport systems inner membrane component YP_003118444.1 PFAM: extracellular solute-binding protein family 5; KEGG: ace:Acel_1116 extracellular solute-binding protein YP_003118445.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_003118446.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: fre:Franean1_1091 acetolactate synthase 3 regulatory subunit YP_003118447.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate YP_003118448.1 KEGG: rxy:Rxyl_1544 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003118449.1 KEGG: ace:Acel_0712 alpha- isopropylmalate/homocitrate synthase family transferase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase YP_003118450.1 PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_1471 major facilitator transporter YP_003118451.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: tfu:Tfu_0616 branched-chain amino acid aminotransferase YP_003118452.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sco:SCO5522 3-isopropylmalate dehydrogenase YP_003118454.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sgr:SGR_251 methyltransferase YP_003118456.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_003118457.1 PFAM: protein of unknown function DUF59; KEGG: sco:SCO5152 ATP-binding protein YP_003118458.1 PFAM: aminoglycoside phosphotransferase; KEGG: fal:FRAAL3875 hypothetical protein YP_003118460.1 PFAM: transcription factor WhiB; HMG-I and HMG-Y DNA-binding domain protein; KEGG: sma:SAV_3070 WhiB-family transcriptional regulator YP_003118462.1 KEGG: hypothetical protein YP_003118463.1 KEGG: hypothetical protein YP_003118464.1 PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein; KEGG: sma:SAV_3072 ATP-dependent DNA helicase YP_003118465.1 PFAM: glutaredoxin; KEGG: sgr:SGR_2338 glutaredoxin-like protein YP_003118467.1 KEGG: sco:SCO5797 secreted protein YP_003118468.1 PFAM: NUDIX hydrolase; Zinc ribbon NADH pyrophosphatase; NADH pyrophosphatase-like; KEGG: sgr:SGR_2339 hypothetical protein YP_003118469.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sma:SAV_3075 peptidase YP_003118470.1 PFAM: aldehyde dehydrogenase; KEGG: xau:Xaut_3374 aldehyde dehydrogenase YP_003118471.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_1705 extracellular solute-binding protein, family 1 YP_003118472.1 PFAM: UvrD/REP helicase; KEGG: sgr:SGR_2341 ATP-dependent DNA helicase YP_003118473.1 PFAM: UvrD/REP helicase; KEGG: sma:SAV_3077 ATP-dependent DNA helicase YP_003118474.1 PFAM: protein of unknown function DUF214; KEGG: fre:Franean1_1655 hypothetical protein YP_003118475.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fre:Franean1_1654 ABC transporter YP_003118476.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: fre:Franean1_1653 histidine kinase YP_003118477.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: fre:Franean1_1652 two component LuxR family transcriptional regulator YP_003118478.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: sma:SAV_3078 hypothetical protein YP_003118479.1 PFAM: conserved hypothetical protein; KEGG: sma:SAV_3079 integral membrane protein YP_003118480.1 The proteins in this cluster have high sequence similarity to MoeB and are possibly involved in the synthesis of molybdopterin, but there has been no biochemical or physiological characterization. There is also no genetic linkage to other molybdopterin cofactor synthesis proteins. These proteins are similar to a Pseudomonas stutzeri protein which is essential to pyridine-2,6-bis(thiocarboxylic acid) synthesis that possibly activates a substrate by adenylation YP_003118481.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_2355 TetR family transcriptional regulator YP_003118482.1 KEGG: ace:Acel_1783 hypothetical protein YP_003118483.1 KEGG: fra:Francci3_1447 transglycosylase YP_003118484.1 KEGG: nca:Noca_1470 hypothetical protein YP_003118485.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicases; helicase; KEGG: sma:SAV_3098 ATP-dependent RNA helicase YP_003118486.1 PFAM: alpha/beta hydrolase fold protein; KEGG: tfu:Tfu_0513 hydrolase YP_003118487.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: ace:Acel_1796 phosphotransferase domain- containing protein YP_003118488.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ter:Tery_2914 short chain dehydrogenase YP_003118489.1 TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sma:SAV_7068 ECF subfamily RNA polymerase sigma factor YP_003118490.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sma:SAV_908 dehydrogenase YP_003118491.1 PFAM: aldehyde dehydrogenase; acyl-CoA reductase; KEGG: sgr:SGR_1826 aldehyde dehydrogenase YP_003118492.1 KEGG: sma:SAV_795 hypothetical protein YP_003118493.1 PFAM: purine catabolism PurC domain protein; KEGG: sgr:SGR_1827 PucR-like transcriptional regulator YP_003118494.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bpy:Bphyt_1042 hydroxymethylpyrimidine transporter CytX YP_003118495.1 PFAM: aminoglycoside phosphotransferase; KEGG: sma:SAV_1341 hypothetical protein YP_003118496.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO5083 actinorhodin transporter YP_003118497.1 PFAM: Tetracyclin repressor domain protein; TetR family transcriptional regulator; KEGG: sco:SCO5082 transcriptional regulator YP_003118498.1 KEGG: cma:Cmaq_1265 hypothetical protein YP_003118499.1 KEGG: sco:SCO5677 ATP/GTP binding protein YP_003118500.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: sgr:SGR_1829 4-aminobutyrate aminotransferase YP_003118501.1 PFAM: alpha/beta hydrolase fold protein; KEGG: rso:RSc3346 lysophospholipase protein YP_003118503.1 PFAM: peptidase C60 sortase A and B; KEGG: stp:Strop_3604 peptidase C60, sortase A and B YP_003118504.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_6944 EmrB/QacA family drug resistance transporter YP_003118505.1 KEGG: sco:SCO6361 integral membrane protein YP_003118506.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nfa:nfa53360 ABC transporter ATP- binding protein YP_003118507.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sco:SCO3654 two-component system sensor kinase YP_003118508.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sco:SCO3756 two component system response regulator YP_003118509.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO1335 oxidoreductase YP_003118510.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: det:DET1390 PAP2 family protein YP_003118511.1 PFAM: damage inducible protein CinA; KEGG: fre:Franean1_1207 competence/damage-inducible protein CinA YP_003118512.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sgr:SGR_1768 phosphatidylglycerophosphate synthase YP_003118513.1 KEGG: sgr:SGR_1769 hypothetical protein; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004; radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003118514.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_6584 EmrB/QacA family drug resistance transporter YP_003118515.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fal:FRAAL0583 MarR family transcriptional regulator YP_003118516.1 KEGG: fal:FRAAL5735 dihydrolipoyllysine- residue acetyltransferase component YP_003118517.1 KEGG: fre:Franean1_7296 hypothetical protein YP_003118518.1 PFAM: protein of unknown function DUF1508; KEGG: tde:TDE0826 hypothetical protein YP_003118519.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: ace:Acel_1501 cell divisionFtsK/SpoIIIE YP_003118520.1 KEGG: saq:Sare_3628 hypothetical protein YP_003118521.1 SMART: ArsR family transcriptional regulator; KEGG: saq:Sare_4678 ArsR family transcriptional regulator YP_003118522.1 PFAM: beta-lactamase; RNA- metabolising metallo-beta-lactamase; KEGG: sma:SAV_2515 metallo-beta-lactamase superfamily hydrolase YP_003118523.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: sgr:SGR_1776 dihydrodipicolinate synthase YP_003118524.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_003118525.1 KEGG: sen:SACE_0556 ABC-type nitrate/sulfonate/bicarbonate transporters-like protein YP_003118526.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: sma:SAV_2694 sensor-like histidine kinase YP_003118527.1 PFAM: Roadblock/LC7 family protein; KEGG: fra:Francci3_0643 hypothetical protein YP_003118528.1 PFAM: protein of unknown function DUF742; KEGG: sgr:SGR_1941 hypothetical protein YP_003118529.1 PFAM: protein of unknown function ATP binding; KEGG: sen:SACE_0693 ATP/GTP-binding protein YP_003118530.1 KEGG: jan:Jann_0716 hypothetical protein YP_003118531.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: stp:Strop_4048 hypothetical protein YP_003118532.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sgr:SGR_6914 LysR family transcriptional regulator YP_003118533.1 PFAM: endoribonuclease L-PSP; KEGG: bja:bll5130 hypothetical protein YP_003118534.1 PFAM: alpha/beta hydrolase fold protein; KEGG: tte:TTE0552 alpha/beta superfamily hydrolase/acyltransferase YP_003118535.1 PFAM: TetR family transcriptional regulator; KEGG: msm:MSMEG_2368 TetR family transcriptional regulator protein domain protein YP_003118536.1 KEGG: mab:MAB_1368 hypothetical protein YP_003118537.1 KEGG: sco:SCO5740 hypothetical protein YP_003118538.1 KEGG: ace:Acel_1506 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase YP_003118539.1 PFAM: peptidase M16 domain protein; KEGG: sgr:SGR_1782 protease YP_003118540.1 KEGG: sma:SAV_2523 polynucleotide phosphorylase/polyadenylase; TIGRFAM: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; RNA binding S1 domain protein; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein YP_003118541.1 TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: lxx:Lxx08990 30S ribosomal protein S15 YP_003118543.1 KEGG: hypothetical protein YP_003118544.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: stp:Strop_4314 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_003118546.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: nca:Noca_1741 HNH nuclease YP_003118547.1 TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: sgr:SGR_1785 hypothetical protein YP_003118548.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: sco:SCO5734 ATP/GTP binding protein membrane protein YP_003118549.1 PFAM: protein of unknown function DUF690; KEGG: sma:SAV_2541 hypothetical protein YP_003118550.1 KEGG: sco:SCO5719 hypothetical protein YP_003118551.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sgr:SGR_5827 M20/M25/M40 family peptidase YP_003118552.1 KEGG: mgi:Mflv_3072 hypothetical protein YP_003118553.1 PFAM: protein of unknown function DUF159; KEGG: kra:Krad_1903 hypothetical protein YP_003118554.1 KEGG: tfu:Tfu_0544 3-phosphoshikimate 1- carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase) YP_003118555.1 PFAM: GTPase EngC; KEGG: sgr:SGR_2311 hypothetical protein YP_003118556.1 KEGG: sgr:SGR_5304 hypothetical protein YP_003118557.1 KEGG: sgr:SGR_5303 hypothetical protein YP_003118558.1 KEGG: MUC1; GPI-anchored cell surface glycoprotein (flocculin) required for pseudohyphal formation, invasive growth, flocculation, and biofilms; transcriptionally regulated by the MAPK pathway (via Ste12p and Tec1p) and the cAMP p-TRUNCATED- YP_003118559.1 PFAM: NAD-glutamate dehydrogenase; KEGG: sgr:SGR_4536 NAD-glutamate dehydrogenase YP_003118560.1 PFAM: tryptophan 23-dioxygenase; KEGG: nca:Noca_1224 tryptophan 2,3-dioxygenase YP_003118561.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4279 acetyltransferase YP_003118562.1 PFAM: protein of unknown function DUF214; KEGG: sma:SAV_3550 ABC transporter transmembrane protein YP_003118563.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sco:SCO3111 ABC transporter ATP-binding protein YP_003118564.1 PFAM: protein of unknown function DUF1211; KEGG: sgr:SGR_1245 hypothetical protein YP_003118565.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sen:SACE_0419 transcriptional regulator YP_003118566.1 PFAM: alpha/beta hydrolase fold protein; KEGG: tfu:Tfu_0079 alpha/beta hydrolase superfamily protein YP_003118567.1 PFAM: oxidoreductase domain protein; oxidoreductase domain; KEGG: aau:AAur_1457 oxidoreductase family protein YP_003118568.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bcz:BCZK1636 sugar ABC transporter permease YP_003118569.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: bcz:BCZK1635 sugar ABC transporter permease YP_003118570.1 PFAM: extracellular solute-binding protein family 1; KEGG: bcz:BCZK1634 sugar ABC transporter sugar- binding protein YP_003118571.1 PFAM: ROK family protein; KEGG: sgr:SGR_6266 ROK family transcriptional regulator YP_003118572.1 PFAM: inner-membrane translocator; KEGG: tfu:Tfu_0078 branched-chain amino acid ABC transporter permease YP_003118573.1 PFAM: inner-membrane translocator; KEGG: tfu:Tfu_0077 branched-chain amino acid ABC transporter permease YP_003118574.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: tfu:Tfu_0076 ABC-type branched-chain amino acid transporters ATPase component YP_003118575.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: tfu:Tfu_0075 ABC-type branched-chain amino acid transporters ATPase component YP_003118576.1 PFAM: extracellular ligand-binding receptor; KEGG: tfu:Tfu_0074 ABC branched-chain amino acid transporter substrate-binding protein YP_003118577.1 KEGG: sgr:SGR_1192 3-oxoadipate CoA transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase subunit beta; PFAM: coenzyme A transferase YP_003118578.1 KEGG: sgr:SGR_1191 3-oxoadipate CoA transferase subunit A; TIGRFAM: 3-oxoacid CoA-transferase, subunit alpha; PFAM: coenzyme A transferase YP_003118579.1 PFAM: GAF domain protein; SMART: GAF domain protein; KEGG: saq:Sare_1796 CdaR family transcriptional regulator YP_003118580.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rxy:Rxyl_2343 3-hydroxybutyrate dehydrogenase YP_003118581.1 KEGG: sma:SAV_5910 hypothetical protein YP_003118582.1 KEGG: sma:SAV_628 secreted alpha-galactosidase; PFAM: ricin B lectin; glycoside hydrolase clan GH- D; SMART: ricin B lectin YP_003118583.1 PFAM: DeoR family transcriptional regulator; GntR family transcriptional regulator; SMART: DeoR family transcriptional regulator; KEGG: sen:SACE_0763 DeoR family transcriptional regulator YP_003118584.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_1078 ABC transporter integral membrane permease YP_003118585.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: art:Arth_3380 binding-protein-dependent transport systems inner membrane component YP_003118586.1 PFAM: extracellular solute-binding protein family 1; KEGG: art:Arth_3379 extracellular solute-binding protein YP_003118587.1 KEGG: hypothetical LOC798921 YP_003118588.1 PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL3658 hypothetical protein YP_003118589.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fra:Francci3_0812 ABC transporter YP_003118590.1 PFAM: transcriptional regulator PadR family protein; KEGG: fal:FRAAL3660 hypothetical protein YP_003118591.1 PFAM: protein of unknown function UPF0182; KEGG: sma:SAV_3055 integral membrane protein YP_003118592.1 KEGG: sco:SCO5203 hypothetical protein YP_003118593.1 SMART: PDZ/DHR/GLGF domain protein; KEGG: sma:SAV_3057 secreted protein YP_003118595.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: sgr:SGR_2323 molybdopterin biosynthesis protein E YP_003118596.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: sco:SCO5200 hypothetical protein YP_003118597.1 KEGG: sma:SAV_3061 hypothetical protein YP_003118598.1 PFAM: protein of unknown function DUF45; KEGG: sgr:SGR_2330 hypothetical protein YP_003118599.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: nca:Noca_1521 short chain enoyl-CoA hydratase / enoyl-CoA hydratase YP_003118600.1 KEGG: nca:Noca_1520 hypothetical protein YP_003118601.1 KEGG: ace:Acel_1768 UBA/ThiF-type NAD/FAD binding protein YP_003118602.1 KEGG: sgr:SGR_2374 hypothetical protein YP_003118603.1 mediates the export of protein precursors bearing twin-arginine signal peptides YP_003118604.1 KEGG: sco:SCO5148 hypothetical protein YP_003118605.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sma:SAV_3117 RNA polymerase sigma factor SigE YP_003118606.1 PFAM: O-methyltransferase family 3; KEGG: ace:Acel_1827 O-methyltransferase family protein YP_003118607.1 KEGG: fre:Franean1_0879 hypothetical protein YP_003118608.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: sma:SAV_3120 enoyl-CoA hydratase/isomerase YP_003118609.1 KEGG: ace:Acel_1838 hypothetical protein YP_003118610.1 KEGG: sco:SCO5141 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_003118611.1 PFAM: conserved hypothetical protein; KEGG: sco:SCO5140 hypothetical protein YP_003118612.1 PFAM: esterase; KEGG: sco:SCO3396 hypothetical protein YP_003118613.1 TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tfu:Tfu_0495 dipeptidase YP_003118614.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_003118615.1 KEGG: sgr:SGR_2387 hypothetical protein YP_003118616.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sen:SACE_7163 HAD family hydrolase YP_003118617.1 KEGG: GG17156 gene product from transcript GG17156- RA YP_003118619.1 PFAM: radical SAM protein; KEGG: saq:Sare_2654 radical SAM domain-containing protein YP_003118620.1 KEGG: sgr:SGR_2054 hypothetical protein YP_003118621.1 PFAM: hypothetical protein; KEGG: sgr:SGR_5768 ATP/GTP-binding protein YP_003118622.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: fre:Franean1_3569 ECF subfamily RNA polymerase sigma-24 factor YP_003118623.1 PFAM: NmrA family protein; KEGG: sco:SCO7108 hypothetical protein YP_003118624.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sma:SAV_5711 hydrolase YP_003118625.1 KEGG: scl:sce1760 hypothetical protein YP_003118626.1 PFAM: aminotransferase class I and II; KEGG: tfu:Tfu_0492 N-succinyldiaminopimelate aminotransferase YP_003118627.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sco:SCO5135 ferredoxin YP_003118628.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: nfa:nfa54310 hypothetical protein YP_003118629.1 PFAM: TetR family transcriptional regulator; KEGG: fal:FRAAL0389 TetR family transcriptional regulator YP_003118630.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_2455 transmembrane efflux protein YP_003118631.1 PFAM: phosphoesterase HXTX; KEGG: sma:SAV_3416 secreted protein YP_003118632.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003118633.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: ace:Acel_0389 hypothetical protein YP_003118634.1 PFAM: amidinotransferase; KEGG: sgr:SGR_672 amidinotransferase YP_003118635.1 TIGRFAM: ornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: sma:SAV_3420 ornithine aminotransferase YP_003118636.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: saq:Sare_5040 AsnC family transcriptional regulator YP_003118637.1 catalyzes the oxidation of malate to oxaloacetate YP_003118638.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO0265 hydroxylase YP_003118639.1 KEGG: aau:AAur_3553 metal-dependent amidase/aminoacylase/carboxypeptidase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003118640.1 Converts isocitrate to alpha ketoglutarate YP_003118641.1 KEGG: sma:SAV_3441 hypothetical protein YP_003118642.1 KEGG: rha:RHA1_ro05183 hypothetical protein YP_003118643.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: tfu:Tfu_2571 methenyltetrahydrofolate cyclohydrolase YP_003118644.1 KEGG: sco:SCO4814 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region YP_003118645.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase; KEGG: nca:Noca_3584 phosphoribosylglycinamide formyltransferase YP_003118646.1 KEGG: hypothetical protein YP_003118647.1 KEGG: pac:PPA1753 hypothetical protein YP_003118648.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: sma:SAV_3764 transcription regulator AsnC YP_003118649.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: sma:SAV_3763 LysE family efflux protein YP_003118650.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_003118651.1 catalyzes the interconversion of succinyl-CoA and succinate YP_003118652.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; KEGG: sgr:SGR_4890 aminopeptidase N YP_003118653.1 PFAM: von Willebrand factor A; KEGG: sco:SCO4805 hypothetical protein YP_003118654.1 KEGG: sco:SCO4804 hypothetical protein YP_003118655.1 PFAM: ATPase associated with various cellular activities AAA_5; KEGG: sgr:SGR_2726 hypothetical protein YP_003118656.1 KEGG: sgr:SGR_2729 hypothetical protein YP_003118657.1 PFAM: zinc finger SWIM domain protein; KEGG: rha:RHA1_ro01904 hypothetical protein YP_003118658.1 PFAM: cobalamin B12-binding domain protein; KEGG: sgr:SGR_2730 isobutyryl-CoA mutase, chain B YP_003118659.1 PFAM: peptidase M23; KEGG: sma:SAV_3462 peptidase YP_003118660.1 TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: sco:SCO4797 ATP-dependent DNA helicase II YP_003118661.1 PFAM: LmbE family protein; KEGG: ace:Acel_0374 LmbE family protein YP_003118662.1 KEGG: sco:SCO5585 PII uridylyl-transferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; DNA polymerase beta domain protein region; amino acid-binding ACT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_003118663.1 PFAM: nitrogen regulatory protein P-II; KEGG: sco:SCO5584 nitrogen regulatory protein P-II YP_003118664.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: sco:SCO5583 ammonium transporter YP_003118665.1 KEGG: sgr:SGR_1896 hypothetical protein YP_003118666.1 KEGG: sgr:SGR_1897 hypothetical protein YP_003118667.1 KEGG: sgr:SGR_1898 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_003118668.1 KEGG: sen:SACE_4778 hypothetical protein YP_003118670.1 PFAM: OsmC family protein; KEGG: sen:SACE_2118 OsmC-like protein YP_003118671.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_4577 ribosomal-protein- alanine N-acetyltransferase YP_003118672.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: nca:Noca_3273 condensin subunit Smc YP_003118673.1 KEGG: sgr:SGR_1902 hypothetical protein YP_003118674.1 PFAM: SCP-like extracellular; KEGG: sma:SAV_2660 hypothetical protein YP_003118675.1 PFAM: SCP-like extracellular; KEGG: sgr:SGR_1904 hypothetical protein YP_003118676.1 KEGG: sus:acid_5462 hypothetical protein YP_003118677.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: fre:Franean1_1637 hypothetical protein YP_003118678.1 KEGG: ace:Acel_0442 hypothetical protein YP_003118679.1 KEGG: sen:SACE_5224 hypothetical protein YP_003118680.1 KEGG: sco:SCO5573 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; zinc finger Fpg domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding YP_003118681.1 KEGG: sma:SAV_2665 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein YP_003118682.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: sma:SAV_2666 50S ribosomal protein L32 YP_003118683.1 PFAM: protein of unknown function DUF177; KEGG: nca:Noca_3282 hypothetical protein YP_003118684.1 KEGG: predicted gene, 100041170 YP_003118685.1 KEGG: sco:SCO6025 hypothetical protein YP_003118686.1 KEGG: sco:SCO5569 hypothetical protein YP_003118687.1 KEGG: sco:SCO5568 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003118688.1 TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase KEGG: sgr:SGR_1913 RNA methylase YP_003118689.1 KEGG: tfu:Tfu_0646 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; helicase; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicases; helicase YP_003118690.1 PFAM: Dak phosphatase; KEGG: sma:SAV_2674 dihydroxyacetone kinase YP_003118691.1 required for 70S ribosome assembly YP_003118692.1 PFAM: glutamate--cysteine ligase; KEGG: sgr:SGR_695 glutamylcysteine synthetase YP_003118693.1 PFAM: protein of unknown function DUF323; KEGG: sma:SAV_7340 hypothetical protein YP_003118694.1 KEGG: sco:SCO0912 hypothetical protein YP_003118695.1 TIGRFAM: methyltransferase; KEGG: sgr:SGR_698 hypothetical protein YP_003118696.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; KEGG: sgr:SGR_1917 phosphomethylpyrimidine kinase YP_003118697.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nca:Noca_0029 GCN5-related N- acetyltransferase YP_003118698.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mlo:mll2048 transcription regulator YP_003118699.1 PFAM: YCII-related; KEGG: aau:AAur_1545 YCII-related domain-containing protein YP_003118700.1 PFAM: stress responsive alpha-beta barrel domain protein; KEGG: sfu:Sfum_1221 stress responsive alpha-beta barrel domain protein YP_003118701.1 PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_C1336 major facilitator superfamily multidrug efflux transporter YP_003118702.1 KEGG: fal:FRAAL5979 thiamine monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein YP_003118703.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: nca:Noca_3289 AsnC family transcriptional regulator YP_003118704.1 KEGG: sma:SAV_2678 hypothetical protein YP_003118705.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_003118706.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_4232 hypothetical protein YP_003118707.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_003118708.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: sco:SCO5558 acyltransferase YP_003118709.1 KEGG: sma:SAV_2682 hypothetical protein YP_003118710.1 KEGG: stp:Strop_1263 hypothetical protein YP_003118711.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: sgr:SGR_1926 histone-like DNA- binding protein YP_003118712.1 KEGG: cjk:jk1220 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein YP_003118713.1 KEGG: sma:SAV_2686 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein YP_003118714.1 PFAM: transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: sgr:SGR_1930 IclR family transcriptional regulator YP_003118715.1 SMART: pyrrolo-quinoline quinone; KEGG: ace:Acel_0402 pyrrolo-quinoline quinone YP_003118716.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: sma:SAV_543 methylenetetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclohydrolase YP_003118717.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; tryptophan halogenase; FAD dependent oxidoreductase; Lycopene beta and epsilon cyclase; KEGG: sma:SAV_4835 electron transfer oxidoreductase YP_003118718.1 KEGG: fra:Francci3_2206 hypothetical protein YP_003118719.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; methyltransferase type 11; methyltransferase type 12; KEGG: sma:SAV_4831 ubiquinone/menaquinone biosynthesis methyltransferase YP_003118720.1 PFAM: amidohydrolase; KEGG: bln:Blon_1953 amidohydrolase YP_003118721.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: fal:FRAAL4174 signal peptide YP_003118722.1 PFAM: AMP-dependent synthetase and ligase; KEGG: fra:Francci3_2165 AMP-dependent synthetase and ligase YP_003118723.1 PFAM: radical SAM protein; KEGG: sma:SAV_4825 hypothetical protein YP_003118724.1 KEGG: hau:Haur_0847 hypothetical protein YP_003118725.1 PFAM: thioesterase superfamily protein; KEGG: dra:DR_A0017 hypothetical protein YP_003118726.1 PFAM: protein of unknown function DUF178; KEGG: sgr:SGR_3001 hypothetical protein YP_003118727.1 KEGG: sco:SCO4497 hypothetical protein YP_003118728.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4496 acetyltransferase YP_003118730.1 PFAM: radical SAM protein; KEGG: fal:FRAAL1010 hypothetical protein YP_003118731.1 KEGG: ank:AnaeK_2302 transcriptional regulator, fis family YP_003118732.1 PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: sma:SAV_4812 transcription regulator AsnC YP_003118734.1 KEGG: dsh:Dshi_1319 hypothetical protein YP_003118735.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy- lyase; PFAM: flavoprotein; KEGG: sgr:SGR_4204 3-octaprenyl-4- hydroxybenzoate carboxy-lyase YP_003118736.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin YP_003118737.1 TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; KEGG: sma:SAV_4809 decarboxylase YP_003118738.1 KEGG: sco:SCO4489 hypothetical protein YP_003118739.1 PFAM: carbohydrate binding family 6; KEGG: sco:SCO7228 polysaccharide lyase YP_003118740.1 KEGG: midasin YP_003118742.1 KEGG: sma:SAV_7449 secreted protein YP_003118743.1 TIGRFAM: cytochrome C biogenesis protein CcsB; PFAM: cytochrome C assembly protein; KEGG: sma:SAV_4801 cytochrome C assembly protein YP_003118744.1 PFAM: ResB family protein; KEGG: sgr:SGR_4198 cytochrome C biogenesis membrane protein YP_003118745.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: sco:SCO4473 cytochrome biogenesis related protein YP_003118746.1 PFAM: redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: sco:SCO4472 secreted protein YP_003118747.1 PFAM: phosphoglycerate mutase; KEGG: sgr:SGR_4193 phosphoglycerate mutase YP_003118748.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_003118749.1 KEGG: hau:Haur_2019 hypothetical protein YP_003118750.1 PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_0113 major facilitator transporter YP_003118751.1 KEGG: sma:SAV_3902 hypothetical protein YP_003118753.1 KEGG: sco:SCO4329 integral membrane protein YP_003118754.1 PFAM: purine or other phosphorylase family 1; KEGG: dau:Daud_0261 hypothetical protein YP_003118755.1 PFAM: protein of unknown function DUF191; KEGG: sco:SCO4326 hypothetical protein YP_003118756.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_003118757.1 KEGG: sma:SAV_3911 hypothetical protein YP_003118758.1 KEGG: sco:SCO4322 integral membrane protein YP_003118759.1 PFAM: Sucraseferredoxin family protein; KEGG: rha:RHA1_ro03455 hypothetical protein YP_003118760.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV_3908 hydrolase YP_003118761.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ace:Acel_0104 cold-shock DNA-binding protein family protein YP_003118762.1 PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; KEGG: nca:Noca_3943 cystathionine gamma-synthase YP_003118763.1 KEGG: tfu:Tfu_0149 integral membrane protein YP_003118764.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: kra:Krad_1164 multiple antibiotic resistance (MarC)-related protein YP_003118765.1 KEGG: bca:BCE_4977 hypothetical protein YP_003118766.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fra:Francci3_2014 EmrB/QacA family drug resistance transporter YP_003118767.1 PFAM: TetR family transcriptional regulator; KEGG: ret:RHE_PE00014 probable transcriptional regulator protein, TetR family YP_003118769.1 PFAM: glycoside hydrolase, family 20, catalytic core; KEGG: sco:SCO2943 sugar hydrolase YP_003118770.1 PFAM: major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_1541 major facilitator superfamily MFS_1 YP_003118771.1 PFAM: helicase; type III restriction protein res subunit; SMART: DEAD-like helicases; helicase; KEGG: sgr:SGR_3186 ATP-dependent DNA helicase YP_003118772.1 KEGG: sma:SAV_3915 ATP-dependent DNA helicase YP_003118773.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: sma:SAV_4200 hypothetical protein YP_003118774.1 PFAM: CutC family protein; KEGG: sgr:SGR_3189 homeostasis protein YP_003118775.1 PFAM: phosphotransferase system EIIC; KEGG: sgr:SGR_4635 phosphotransferase system IIC component YP_003118776.1 PFAM: UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: aau:AAur_2211 GntR family transcriptional regulator YP_003118777.1 PFAM: phosphotransferase system PTS EIIB protein; KEGG: rha:RHA1_ro01551 protein-N(pi)- phosphohistidine--sugar phosphotransferase YP_003118778.1 TIGRFAM: PTS system, glucose subfamily, IIsubunit alpha; PFAM: sugar-specific permease EIIA 1 domain; KEGG: tfu:Tfu_2489 phosphoenolpyruvate- dependent sugar phosphotransferase YP_003118779.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: sgr:SGR_6863 phosphocarrier protein HPr YP_003118780.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: lxx:Lxx00830 PTS system, enzyme I YP_003118781.1 KEGG: sgr:SGR_3194 hypothetical protein YP_003118782.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: sen:SACE_0284 thioredoxin-disulfide reductase YP_003118783.1 KEGG: sgr:SGR_3197 hypothetical protein YP_003118784.1 PFAM: NB-ARC domain protein; Tetratricopeptide TPR_4; SMART: hypothetical protein; KEGG: sma:SAV_3804 transcriptional regulator YP_003118785.1 KEGG: sen:SACE_0512 hypothetical protein YP_003118786.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_003118787.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sgr:SGR_3226 cold shock protein YP_003118788.1 PFAM: thiamineS protein; KEGG: sco:SCO4294 hypothetical protein YP_003118789.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_003118790.1 PFAM: glycosyl transferase family 2; KEGG: sco:SCO4292 hypothetical protein YP_003118791.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: amt:Amet_3640 ArsR family transcriptional regulator YP_003118792.1 PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0365 major facilitator transporter YP_003118793.1 KEGG: mgi:Mflv_0174 fis family transcriptional regulator YP_003118794.1 KEGG: sgr:SGR_4055 N-acetylglucosamine-6- phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; amidohydrolase YP_003118795.1 KEGG: sma:SAV_6931 hypothetical protein YP_003118796.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: sma:SAV_6930 hypothetical protein YP_003118797.1 KEGG: ace:Acel_0487 hypothetical protein YP_003118799.1 KEGG: mav:MAV_1020 hypothetical protein YP_003118800.1 PFAM: protein of unknown function DUF214; KEGG: tfu:Tfu_1848 ABC transporter transmembrane protein YP_003118801.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fre:Franean1_4887 ABC transporter YP_003118802.1 KEGG: bme:BMEI0063 hypothetical protein YP_003118803.1 KEGG: sgr:SGR_313 RNA polymerase ECF-subfamily sigma factor YP_003118804.1 PFAM: ribonuclease H; KEGG: sgr:SGR_6591 ribonuclease H YP_003118805.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: sco:SCO4508 cell division-related protein YP_003118806.1 PFAM: peptidase A24A prepilin type IV; KEGG: sco:SCO4549 type IV peptidase YP_003118807.1 KEGG: sco:SCO4231 lipoprotein YP_003118809.1 PFAM: transcription factor CarD; KEGG: ace:Acel_0078 CarD family transcriptional regulator YP_003118810.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_003118811.1 KEGG: sgr:SGR_4013 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; PFAM: MECDP-synthase YP_003118812.1 PFAM: FAD dependent oxidoreductase; KEGG: sgr:SGR_6794 oxidoreductase YP_003118813.1 PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: afw:Anae109_3547 hypothetical protein YP_003118814.1 TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bwe:BcerKBAB4_0167 Bcr/CflA subfamily drug resistance transporter YP_003118815.1 KEGG: sco:SCO4235 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M) YP_003118816.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: sma:SAV_3966 tRNA/rRNA methyltransferase YP_003118817.1 TIGRFAM: agmatinase; PFAM: arginase/agmatinase/formiminoglutamase; KEGG: msm:MSMEG_4459 agmatinase YP_003118818.1 PFAM: beta-lactamase; KEGG: rha:RHA1_ro05862 hypothetical protein YP_003118819.1 PFAM: PHP domain protein; KEGG: cth:Cthe_0724 HisJ family histidinol phosphate phosphatase YP_003118820.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sgr:SGR_6069 hydrolase YP_003118821.1 PFAM: amine oxidase; KEGG: sco:SCO1454 amino oxidase YP_003118822.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sgr:SGR_6815 hydrolase YP_003118823.1 KEGG: sco:SCP1.273c large secreted protein YP_003118824.1 PFAM: regulatory protein IclR; SMART: regulatory protein IclR; KEGG: fre:Franean1_6236 IclR family transcriptional regulator YP_003118825.1 PFAM: lipolytic protein G-D-S-L family; KEGG: fre:Franean1_6240 GDSL family lipase YP_003118826.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fre:Franean1_6238 short-chain dehydrogenase/reductase SDR YP_003118827.1 PFAM: Luciferase-like monooxygenase; KEGG: fre:Franean1_6239 luciferase family protein YP_003118828.1 KEGG: tfu:Tfu_1681 integral membrane protein YP_003118829.1 PFAM: ABC transporter; TOBE domain protein; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: sma:SAV_3962 ABC transporter ATP-binding protein YP_003118830.1 KEGG: sma:SAV_2331 hypothetical protein YP_003118831.1 PFAM: acyltransferase 3; KEGG: sco:SCO2493 hypothetical protein YP_003118832.1 KEGG: sco:SCO4657 integral membrane protein YP_003118833.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP- mannose dehydrogenase dimerisation; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: nca:Noca_2995 UDP-glucose/GDP-mannose dehydrogenase YP_003118834.1 PFAM: glycosyl transferase family 2; KEGG: nca:Noca_2994 glycosyl transferase YP_003118835.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: nca:Noca_2993 NAD-dependent epimerase/dehydratase YP_003118836.1 PFAM: glycosyl transferase family 2; KEGG: cef:CE0335 glycosyl transferase YP_003118837.1 KEGG: mab:MAB_0504c hypothetical protein YP_003118838.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: sgr:SGR_4945 UDP-glucose 4-epimerase YP_003118839.1 PFAM: acyltransferase 3; KEGG: sco:SCO3305 hypothetical protein YP_003118840.1 PFAM: glycosyl transferase family 2; KEGG: sco:SCO1423 glycosyl transferase YP_003118841.1 KEGG: mva:Mvan_5629 transmembrane protein YP_003118843.1 PFAM: glycosyl transferase family 2; KEGG: art:Arth_2683 glycosyl transferase, family 2 YP_003118844.1 KEGG: mjl:Mjls_5174 integral membrane protein YP_003118845.1 KEGG: cmi:CMM_2307 hypothetical protein YP_003118846.1 KEGG: ace:Acel_0442 hypothetical protein YP_003118847.1 PFAM: glycosyl transferase family 2; KEGG: gsu:GSU0633 glycosyl transferase, group 2 family protein YP_003118848.1 KEGG: bid:Bind_2857 hypothetical protein YP_003118849.1 PFAM: glycosyl transferase family 2; KEGG: gsu:GSU0633 glycosyl transferase, group 2 family protein YP_003118850.1 PFAM: glycosyl transferase family 2; KEGG: art:Arth_2683 glycosyl transferase, family 2 YP_003118851.1 PFAM: glycosyl transferase family 2; KEGG: lxx:Lxx05130 dolichyl-phosphate mannose synthase YP_003118852.1 KEGG: art:Arth_2682 hypothetical protein YP_003118853.1 KEGG: cef:CE0352 hypothetical protein YP_003118854.1 PFAM: glycosyl transferase family 2; KEGG: gsu:GSU0633 glycosyl transferase, group 2 family protein YP_003118855.1 PFAM: protein of unknown function DUF308 membrane; KEGG: nfa:nfa31070 hypothetical protein YP_003118856.1 KEGG: cms:CMS_0628 dTDP-sugar reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; NAD- dependent epimerase/dehydratase YP_003118857.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: cmi:CMM_1010 dTDP-glucose 4,6- dehydratase YP_003118858.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; KEGG: lxx:Lxx04930 glucose-1-phosphate thymidylyltransferase YP_003118859.1 KEGG: ace:Acel_0568 dTDP-4-dehydrorhamnose 3,5- epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003118860.1 PFAM: protein of unknown function DUF909; KEGG: kra:Krad_3124 hypothetical protein YP_003118861.1 PFAM: sodium:dicarboxylate symporter; KEGG: fre:Franean1_4413 sodium:dicarboxylate symporter YP_003118862.1 PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: fre:Franean1_4414 signal transduction histidine kinase regulating citrate/malate metabolism YP_003118863.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: fal:FRAAL2991 two-component system response regulator YP_003118864.1 PFAM: transcriptional regulator; SMART: response regulator receiver; KEGG: sen:SACE_2833 two-component system response regulator YP_003118865.1 KEGG: sco:SCO4524 hypothetical protein YP_003118866.1 KEGG: sco:SCO4525 hypothetical protein YP_003118867.1 PFAM: type II secretion system protein E; KEGG: sco:SCO4526 protein kinase YP_003118868.1 PFAM: type II secretion system protein; KEGG: sco:SCO4527 integral membrane protein YP_003118869.1 PFAM: type II secretion system protein; KEGG: sco:SCO4528 integral membrane protein YP_003118870.1 KEGG: GF22328 gene product from transcript GF22328- RA YP_003118871.1 PFAM: TadE family protein; KEGG: sco:SCO4530 hypothetical protein YP_003118872.1 PFAM: TadE family protein; KEGG: sco:SCO4531 septum determining protein YP_003118873.1 KEGG: sco:SCO4532 hypothetical protein YP_003118874.1 KEGG: sco:SCO4548 integral membrane protein YP_003118875.1 KEGG: cotA; spore coat protein sp96 YP_003118876.1 KEGG: nca:Noca_1538 hypothetical protein YP_003118877.1 KEGG: bam:Bamb_4626 hypothetical protein YP_003118879.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sgr:SGR_4009 two-component system response regulator YP_003118880.1 KEGG: sco:SCO4229 sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_003118881.1 TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; KEGG: sgr:SGR_4007 phosphate transporter regulatory protein YP_003118882.1 KEGG: sgr:SGR_4063 hypothetical protein YP_003118883.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: sgr:SGR_4062 RNA polymerase ECF-subfamily sigma factor YP_003118884.1 TIGRFAM: small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; KEGG: sco:SCO0783 tetracycline resistance protein YP_003118886.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_003118887.1 KEGG: sco:SCO4205 hypothetical protein YP_003118888.1 TIGRFAM: UDP-N-acetylglucosamine; PFAM: glycosyl transferase group 1; KEGG: sma:SAV_4006 glycosyl transferase YP_003118889.1 PFAM: TetR family transcriptional regulator; KEGG: mbb:BCG_0369c hypothetical protein YP_003118890.1 PFAM: peptidase S53 propeptide; KEGG: sma:SAV_5949 serine protease YP_003118891.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sma:SAV_4012 DNA-binding protein YP_003118892.1 KEGG: sgr:SGR_3988 hypothetical protein YP_003118893.1 KEGG: sco:SCO4200 hypothetical protein YP_003118894.1 PFAM: alpha/beta hydrolase fold protein; KEGG: saq:Sare_0382 alpha/beta hydrolase fold protein YP_003118895.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fra:Francci3_2225 MarR family transcriptional regulator YP_003118896.1 PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_2254 EmrB/QacA family drug resistance transporter YP_003118897.1 KEGG: GK16094 gene product from transcript GK16094- RA YP_003118898.1 PFAM: transcriptional regulator PadR family protein; KEGG: sen:SACE_1025 PadR-like family transcriptional regulator YP_003118899.1 PFAM: YCII-related; KEGG: pmy:Pmen_3123 DGPFAETKE family protein YP_003118900.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: scl:sce6417 ECF subfamily RNA polymerase sigma factor YP_003118901.1 KEGG: nfa:nfa55810 hypothetical protein YP_003118902.1 PFAM: L-asparaginase II; KEGG: sco:SCO4185 hypothetical protein YP_003118903.1 KEGG: sen:SACE_7115 aerial mycelium formation protein YP_003118904.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: tfu:Tfu_2873 hypothetical protein YP_003118905.1 KEGG: sma:SAV_6064 hypothetical protein YP_003118906.1 PFAM: ferric-uptake regulator; KEGG: sgr:SGR_3971 FUR family transcriptional regulator YP_003118907.1 PFAM: Domain of unknown function DUF1794; KEGG: nca:Noca_4252 hypothetical protein YP_003118909.1 KEGG: sco:SCO4165 hypothetical protein YP_003118910.1 PFAM: rhodanese; SMART: Rhodanese domain protein; KEGG: sgr:SGR_3965 thiosulfate sulfurtransferase YP_003118911.1 KEGG: nca:Noca_1677 hypothetical protein YP_003118912.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in M. tuberculosis this protein regulates polyketide synthases and secreted or membrane proteins YP_003118913.1 KEGG: sgr:SGR_3964 hypothetical protein YP_003118914.1 KEGG: kpe:KPK_3638 DNA translocase FtsK YP_003118915.1 PFAM: thiamineS protein; KEGG: sgr:SGR_3962 molybdopterin converting factor YP_003118916.1 KEGG: sco:SCO4160 hydrolase YP_003118917.1 PFAM: transcriptional regulator; KEGG: sco:SCO4159 transcriptional regulator YP_003118918.1 TIGRFAM: mycothiol biosynthesis acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: ace:Acel_2026 GCN5-related N- acetyltransferase YP_003118919.1 KEGG: nfa:nfa19480 hypothetical protein YP_003118920.1 PFAM: peptidase C60 sortase A and B; KEGG: sco:SCO0935 secreted protein YP_003118921.1 KEGG: sal:Sala_0723 hypothetical protein YP_003118922.1 PFAM: polyphosphate kinase; KEGG: sco:SCO4145 polyphosphate kinase YP_003118923.1 PFAM: CHAD domain containing protein; KEGG: sgr:SGR_3935 hypothetical protein YP_003118924.1 PFAM: NUDIX hydrolase; phosphoglycerate mutase; KEGG: nfa:nfa42090 MutT family protein YP_003118925.1 TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; KEGG: fre:Franean1_0352 phosphate ABC transporter periplasmic phosphate-binding protein YP_003118926.1 TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transporters inner membrane component; KEGG: fra:Francci3_4264 phosphate ABC transporter permease YP_003118927.1 KEGG: sma:SAV_4075 phosphate ABC transporter ATP- binding protein; TIGRFAM: phosphate ABC transporter ATPase; PFAM: ABC transporter related; SMART: ATPase AAA YP_003118928.1 KEGG: mlo:mll4748 contains similarity to auxin- binding protein YP_003118929.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: sgr:SGR_2124 ArsR family transcriptional regulator YP_003118930.1 PFAM: major facilitator superfamily MFS_1; KEGG: ank:AnaeK_4388 major facilitator superfamily MFS_1 YP_003118931.1 KEGG: nca:Noca_1109 hypothetical protein YP_003118932.1 KEGG: nca:Noca_1110 hypothetical protein YP_003118933.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_003118934.1 PFAM: protein of unknown function DUF195; KEGG: fal:FRAAL6141 DNA recombination protein YP_003118935.1 KEGG: ace:Acel_1859 hypothetical protein YP_003118937.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_003118938.1 KEGG: sgr:SGR_2474 exoribonuclease large subunit; TIGRFAM: exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type YP_003118939.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO2379 acetyltransferase YP_003118940.1 TIGRFAM: exodeoxyribonuclease VII small subunit; PFAM: exonuclease VII small subunit; KEGG: sco:SCO5055 exodeoxyribonuclease VII small subunit YP_003118941.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_003118942.1 KEGG: pac:PPA0567 hypothetical protein YP_003118943.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_5165 major facilitator superfamily permease YP_003118944.1 PFAM: Luciferase-like monooxygenase; KEGG: mab:MAB_4496c luciferase-like monooxygenase YP_003118945.1 KEGG: nfa:nfa18100 transcriptional regulator YP_003118946.1 KEGG: eli:ELI_05545 hypothetical protein YP_003118947.1 KEGG: sco:SCO3744 hypothetical protein YP_003118948.1 KEGG: sma:SAV_4572 hypothetical protein YP_003118949.1 PFAM: glycosyl transferase family 2; KEGG: sco:SCO3742 glycosyltransferase YP_003118950.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sco:SCO3741 response regulator YP_003118951.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sco:SCO3740 histidine kinase YP_003118952.1 KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein YP_003118953.1 PFAM: protein of unknown function DUF214; KEGG: sco:SCO1031 ABC transporter transmembrane protein YP_003118954.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sco:SCO1032 ABC transporter ATP-binding protein YP_003118955.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_2275 transmembrane efflux protein YP_003118956.1 KEGG: saq:Sare_2203 hypothetical protein YP_003118957.1 PFAM: NLP/P60 protein; lytic transglycosylase catalytic; KEGG: sma:SAV_4083 secreted transglycosylase YP_003118958.1 KEGG: sgr:SGR_3920 integral membrane protein YP_003118959.1 KEGG: sma:SAV_4099 integral membrane protein YP_003118960.1 KEGG: sma:SAV_4100 integral membrane protein YP_003118961.1 KEGG: sgr:SGR_3917 hypothetical protein YP_003118962.1 KEGG: sco:SCO4127 ATP/GTP-binding protein YP_003118963.1 PFAM: arginase/agmatinase/formiminoglutamase; KEGG: rsa:RSal33209_3378 arginase YP_003118964.1 KEGG: dge:Dgeo_2313 GCN5-related N- acetyltransferase YP_003118966.1 PFAM: aldo/keto reductase; KEGG: dge:Dgeo_2171 aldo/keto reductase YP_003118968.1 PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sma:SAV_2739 LuxR family transcriptional regulator YP_003118969.1 PFAM: stage II sporulation E family protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; KEGG: sco:SCO4120 hypothetical protein YP_003118970.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: stp:Strop_1661 helix-turn-helix domain- containing protein YP_003118971.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_7182 ECF subfamily RNA polymerase sigma-24 factor YP_003118972.1 KEGG: nca:Noca_4018 ABC-type branched-chain amino acid transporters periplasmic component-like YP_003118973.1 PFAM: inner-membrane translocator; KEGG: nca:Noca_4017 inner-membrane translocator YP_003118974.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nca:Noca_4016 ABC transporter YP_003118975.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: nca:Noca_4015 ABC transporter YP_003118976.1 KEGG: nca:Noca_4014 hypothetical protein YP_003118977.1 KEGG: nca:Noca_4013 hypothetical protein YP_003118978.1 PFAM: extracellular solute-binding protein family 5; KEGG: sma:SAV_3048 extracellular solute-binding dependent transport lipoprotein YP_003118979.1 KEGG: art:Arth_4015 peptide ABC transporter ATPase; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003118980.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_3046 peptide ABC transporter permease protein YP_003118981.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sma:SAV_3047 peptide ABC transporter permease protein YP_003118982.1 KEGG: stp:Strop_4339 peptide ABC transporter ATPase; TIGRFAM: peptide ABC transporter ATPase; PFAM: ABC transporter; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA YP_003118983.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: stp:Strop_4338 binding-protein-dependent transport systems inner membrane component YP_003118984.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: stp:Strop_4337 binding-protein-dependent transport systems inner membrane component YP_003118985.1 PFAM: extracellular solute-binding protein family 5; KEGG: saq:Sare_2145 extracellular solute-binding protein YP_003118986.1 PFAM: delta-aminolevulinic acid dehydratase; KEGG: sco:SCO3311 delta-aminolevulinic acid dehydratase YP_003118987.1 KEGG: sco:SCO1149 hypothetical protein YP_003118988.1 PFAM: uroporphyrinogen III synthase HEM4; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sma:SAV_4741 uroporphyrin-III C- methyltransferase/uroporphyrinogen-III synthase YP_003118989.1 KEGG: sgr:SGR_4156 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: porphobilinogen deaminase YP_003118990.1 KEGG: sgr:SGR_4155 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like YP_003118991.1 modulates transcription in response to the NADH/NAD(+) redox state YP_003118992.1 PFAM: glutaredoxin 2; KEGG: sgr:SGR_4153 redoxin YP_003118993.1 TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase- like); PFAM: haloacid dehalogenase; KEGG: sma:SAV_4736 3-phosphoserine phosphatase YP_003118994.1 TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sma:SAV_4735 ECF subfamily RNA polymerase sigma factor YP_003118995.1 KEGG: sgr:SGR_4150 hypothetical protein YP_003118996.1 KEGG: sma:SAV_30 hypothetical protein YP_003118997.1 PFAM: transcriptional regulator PadR family protein; KEGG: saq:Sare_3047 PadR-like family transcriptional regulator YP_003118998.1 KEGG: sgr:SGR_3838 hypothetical protein YP_003118999.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: saq:Sare_1644 Crp/FNR family transcriptional regulator YP_003119000.1 PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: sen:SACE_6955 phospholipid/glycerol acyltransferase YP_003119001.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: fra:Francci3_0479 NAD-dependent epimerase/dehydratase YP_003119002.1 PFAM: protein of unknown function DUF1713; KEGG: sgr:SGR_4147 hypothetical protein YP_003119003.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: ace:Acel_0244 DNA binding domain-containing protein YP_003119004.1 KEGG: sco:SCO3329 hypothetical protein YP_003119005.1 PFAM: protein of unknown function DUF214; KEGG: saq:Sare_0412 hypothetical protein YP_003119006.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: kra:Krad_1869 ABC transporter-related protein YP_003119007.1 TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: kra:Krad_1868 RND family efflux transporter MFP subunit YP_003119008.1 PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_4143 major facilitator superfamily permease YP_003119009.1 KEGG: mmi:MMAR_5348 hypothetical protein YP_003119010.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: fal:FRAAL0521 hypothetical protein YP_003119011.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: afw:Anae109_0912 peptidase S1 and S6 chymotrypsin/Hap YP_003119012.1 KEGG: ank:AnaeK_3967 hypothetical protein YP_003119013.1 PFAM: metallophosphoesterase; KEGG: mpa:MAP1055c hypothetical protein YP_003119014.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: fal:FRAAL0723 formyl-CoA transferase YP_003119015.1 KEGG: sen:SACE_1453 hypothetical protein YP_003119016.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_1454 RNA polymerase ECF sigma factor YP_003119017.1 KEGG: sma:SAV_4724 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding YP_003119018.1 PFAM: Proline dehydrogenase; KEGG: sen:SACE_1978 proline dehydrogenase YP_003119019.1 PFAM: methyltransferase type 11; methyltransferase type 12; KEGG: sco:SCO3340 hypothetical protein YP_003119020.1 PFAM: xylose isomerase; KEGG: sgr:SGR_4133 hypothetical protein YP_003119021.1 PFAM: Ppx/GppA phosphatase; KEGG: sco:SCO3348 DNA-binding protein YP_003119022.1 KEGG: sgr:SGR_4131 hypothetical protein YP_003119023.1 KEGG: proteophosphoglycan 5 YP_003119024.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: tfu:Tfu_2716 alanine-rich protein YP_003119025.1 KEGG: sgr:SGR_4129 DNA repair protein; TIGRFAM: DNA repair protein RadA; SMART: ATPase AAA YP_003119026.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_003119027.1 KEGG: stp:Strop_2177 hypothetical protein YP_003119028.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: rsa:RSal33209_1793 5-amino-6-(5- phosphoribosylamino)uracil reductase YP_003119029.1 KEGG: sgr:SGR_4127 hypothetical protein YP_003119030.1 PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop; KEGG: sco:SCO3355 adenine glycosylase YP_003119031.1 PFAM: protein of unknown function DUF664; KEGG: sco:SCO7722 hypothetical protein YP_003119032.1 KEGG: bvi:Bcep1808_4081 XRE family transcriptional regulator YP_003119033.1 PFAM: PEBP family protein; KEGG: sea:SeAg_B1039 hypothetical protein YP_003119034.1 KEGG: sgr:SGR_5829 secreted protein YP_003119035.1 PFAM: ATPase AAA; ATPase AAA central domain protein; UvrB/UvrC protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA; KEGG: sco:SCO3373 Clp-family ATP-binding protease YP_003119036.1 KEGG: sco:SCO3374 hypothetical protein YP_003119037.1 KEGG: rsa:RSal33209_3196 Lsr2 protein YP_003119038.1 catalyzes the conversion of l-glutamate to a-N-acetyl-l-glutamate in arginine biosynthesis YP_003119039.1 PFAM: oxidoreductase FAD-binding domain protein; globin; KEGG: sma:SAV_4276 flavohemoprotein YP_003119041.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_003119042.1 KEGG: sen:SACE_2043 hypothetical protein YP_003119043.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_003119044.1 KEGG: sgr:SGR_4110 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_003119045.1 catalyzes the formation of oxaloacetate from L-aspartate YP_003119046.1 KEGG: sma:SAV_7245 aspartate alpha-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase YP_003119047.1 KEGG: sma:SAV_4687 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_003119048.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: sco:SCO3384 hypothetical protein YP_003119049.1 PFAM: protein of unknown function DUF939; KEGG: sma:SAV_7431 integral membrane protein YP_003119050.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dol:Dole_0119 GCN5-related N- acetyltransferase YP_003119051.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_003119052.1 PFAM: SNARE associated Golgi protein; KEGG: fal:FRAAL3232 hypothetical protein YP_003119053.1 KEGG: hypothetical protein; K01238 YP_003119054.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_003119055.1 PFAM: PSP1 domain protein; KEGG: ace:Acel_1964 PSP1 domain-containing protein YP_003119056.1 PFAM: TAP domain protein; alpha/beta hydrolase fold protein; KEGG: sco:SCO3540 proteinase (secreted protein) YP_003119058.1 KEGG: ote:Oter_3055 hypothetical protein YP_003119059.1 PFAM: protein of unknown function DUF488; KEGG: sgr:SGR_2787 hypothetical protein YP_003119060.1 KEGG: fre:Franean1_6684 hypothetical protein YP_003119061.1 SMART: helix-turn-helix domain protein; KEGG: sma:SAV_4744 DNA-binding protein YP_003119062.1 KEGG: sgr:SGR_4170 hypothetical protein YP_003119063.1 KEGG: ace:Acel_1971 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase; major facilitator superfamily MFS_1 YP_003119064.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the subunit beta on the DNA YP_003119065.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: sma:SAV_2120 AraC family transcription regulator YP_003119066.1 PFAM: NmrA family protein; KEGG: sco:SCO2733 hypothetical protein YP_003119067.1 KEGG: sma:SAV_5121 hypothetical protein YP_003119068.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO4674 hypothetical protein YP_003119069.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rha:RHA1_ro01384 AraC family transcriptional regulator YP_003119070.1 PFAM: GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sco:SCO0357 GntR family regulator YP_003119071.1 KEGG: sma:SAV_4520 hypothetical protein YP_003119072.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sgr:SGR_2763 dehydrogenase YP_003119073.1 KEGG: tfu:Tfu_2237 hypothetical protein YP_003119074.1 KEGG: nca:Noca_3929 integral membrane protein YP_003119075.1 PFAM: xanthine/uracil/vitamin C permease; KEGG: sma:SAV_6386 hypoxanthine/guanine permease YP_003119076.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sgr:SGR_4105 two-component system response regulator YP_003119077.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sma:SAV_4680 two-component system sensor kinase YP_003119078.1 PFAM: protein of unknown function DUF185; KEGG: sco:SCO3391 hypothetical protein YP_003119079.1 PFAM: zinc finger SWIM domain protein; KEGG: sma:SAV_457 hypothetical protein YP_003119080.1 KEGG: LOC758554; hypothetical protein LOC758554 YP_003119081.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: sma:SAV_4678 NADH dehydrogenase I chain D YP_003119082.1 KEGG: fal:FRAAL3687 hypothetical protein YP_003119083.1 KEGG: sgr:SGR_4090 hypothetical protein YP_003119084.1 KEGG: sgr:SGR_4091 2-amino-4-hydroxy-6- hydroxymethyldihydr opteridine pyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK YP_003119085.1 TIGRFAM: dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; KEGG: sco:SCO3400 dihydroneopterin aldolase YP_003119086.1 KEGG: sgr:SGR_4093 hypothetical protein YP_003119087.1 KEGG: sgr:SGR_4094 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_003119088.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF472; protein of unknown function DUF471; KEGG: sma:SAV_4673 hypothetical protein YP_003119089.1 KEGG: sgr:SGR_4089 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I YP_003119090.1 KEGG: sgr:SGR_4088 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; ATPase AAA; ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA YP_003119091.1 KEGG: sco:SCO3405 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003119092.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: tfu:Tfu_2897 helix-turn-helix, fis-type YP_003119093.1 KEGG: sma:SAV_4663 hypothetical protein YP_003119094.1 PFAM: polysaccharide deacetylase; KEGG: sen:SACE_5426 polysaccharide deacetylase YP_003119095.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sen:SACE_5811 MerR family transcriptional regulator YP_003119096.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: sma:SAV_4662 D-alanyl-D-alanine carboxypeptidase YP_003119097.1 PFAM: inorganic pyrophosphatase; KEGG: sco:SCO3409 inorganic pyrophosphatase YP_003119099.1 PFAM: ArsR family transcriptional regulator; regulatory protein MarR; SMART: ArsR family transcriptional regulator; KEGG: aau:AAur_0079 transcriptional regulator YP_003119100.1 PFAM: major facilitator superfamily MFS_1; KEGG: aau:AAur_0078 major facilitator transporter YP_003119102.1 PFAM: NUDIX hydrolase; KEGG: sma:SAV_1421 MutT/NUDIX-family protein YP_003119103.1 PFAM: protein of unknown function DUF1470; KEGG: stp:Strop_1541 hypothetical protein YP_003119104.1 KEGG: bja:blr2082 hypothetical protein YP_003119105.1 PFAM: NLP/P60 protein; KEGG: ace:Acel_0198 NLP/P60 protein YP_003119106.1 PFAM: GCN5-related N-acetyltransferase; KEGG: scl:sce2328 acetyltransferase YP_003119107.1 PFAM: protein of unknown function DUF820; KEGG: sco:SCO4576 hypothetical protein YP_003119108.1 KEGG: sco:SCO3543 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein YP_003119109.1 PFAM: methyltransferase small; KEGG: sgr:SGR_3303 methyltransferase YP_003119110.1 KEGG: mav:MAV_0277 hypothetical protein YP_003119111.1 KEGG: sen:SACE_7264 hypothetical protein YP_003119112.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_003119113.1 KEGG: sgr:SGR_3306 anti-sigma factor YP_003119114.1 TIGRFAM: anti-anti-sigma factor; PFAM: sulfate transporter/antisigma-factor antagonist STAS; KEGG: ace:Acel_1975 anti-sigma-factor antagonist YP_003119115.1 PFAM: DEAD/DEAH box helicase; helicase domain protein; SMART: DEAD-like helicases; helicase; KEGG: sma:SAV_4613 ATP-dependent RNA helicase YP_003119116.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sco:SCO3147 ABC transporter ATP-binding subunit YP_003119117.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: NACA, TEBP; nascent polypeptide-associated complex subunit alpha YP_003119118.1 PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; response regulator receiver; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sgr:SGR_4366 two-component system response regulator YP_003119119.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sma:SAV_3572 two-component system response regulator YP_003119120.1 PFAM: polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4- dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: nca:Noca_4184 polysaccharide biosynthesis protein CapD YP_003119121.1 PFAM: cell wall binding repeat 2- containing protein; KEGG: ace:Acel_1679 protease-like YP_003119122.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; KEGG: cms:CMS_2752 oxidoreductase YP_003119123.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sma:SAV_3413 D-alanyl-D-alanine carboxypeptidase YP_003119124.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl- CoA dehydrogenase type 2 domain; KEGG: rha:RHA1_ro02304 glutaryl-CoA dehydrogenase YP_003119125.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rha:RHA1_ro02303 transferase YP_003119126.1 PFAM: GntR family transcriptional regulator; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sen:SACE_1909 GntR family transcriptional regulator YP_003119127.1 KEGG: sgr:SGR_1693 LacI family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_003119128.1 PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO7013 sugar-binding lipoprotein YP_003119129.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO7012 binding protein dependent transport protein YP_003119130.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: sco:SCO7011 membrane transporter YP_003119131.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sco:SCO7010 alpha glucosidase YP_003119132.1 KEGG: sgr:SGR_1537 hypothetical protein YP_003119133.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_6648 helix-turn-helix domain- containing protein YP_003119134.1 PFAM: protein of unknown function DUF397; KEGG: nfa:nfa56120 hypothetical protein YP_003119135.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: nfa:nfa27680 transcriptional regulator YP_003119136.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; ricin B lectin; aminoglycoside phosphotransferase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: fra:Francci3_4435 serine/threonine protein kinase YP_003119137.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: stp:Strop_1437 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_003119138.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: sen:SACE_5518 ATP/GTP binding protein YP_003119139.1 TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: sgr:SGR_6351 hypothetical protein YP_003119140.1 PFAM: protein of unknown function DUF690; KEGG: stp:Strop_1440 hypothetical protein YP_003119141.1 KEGG: hypothetical protein YP_003119142.1 PFAM: transcriptional regulator; SMART: response regulator receiver; KEGG: sen:SACE_2833 two-component system response regulator YP_003119143.1 KEGG: saq:Sare_4832 hypothetical protein YP_003119144.1 KEGG: nca:Noca_0306 hypothetical protein YP_003119145.1 KEGG: conserved hypothetical protein YP_003119146.1 KEGG: met:M446_5135 flagellin domain-containing protein YP_003119147.1 KEGG: predicted gene, 100041170 YP_003119149.1 KEGG: saq:Sare_0934 hypothetical protein YP_003119150.1 KEGG: rso:RSc2976 penicillin-binding 1 transmembrane protein YP_003119151.1 KEGG: fal:FRAAL0278 hypothetical protein YP_003119152.1 KEGG: sen:SACE_5460 hypothetical protein YP_003119153.1 KEGG: ace:Acel_1928 lipopolysaccharide biosynthesis YP_003119154.1 KEGG: ace:Acel_1928 lipopolysaccharide biosynthesis YP_003119155.1 PFAM: O-antigen polymerase; KEGG: art:Arth_4126 O-antigen polymerase YP_003119156.1 PFAM: polysaccharide biosynthesis protein; KEGG: art:Arth_4055 polysaccharide biosynthesis protein YP_003119157.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_5970 TetR family transcriptional regulator YP_003119158.1 PFAM: cytochrome P450; KEGG: sen:SACE_5939 cytochrome p450-like enzyme YP_003119159.1 PFAM: glycosyl transferase family 2; KEGG: smd:Smed_4802 glycosyl transferase family 2 YP_003119160.1 KEGG: ace:Acel_1933 hypothetical protein YP_003119161.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: art:Arth_4056 DegT/DnrJ/EryC1/StrS aminotransferase YP_003119162.1 KEGG: ace:Acel_1935 acetyltransferase YP_003119163.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ace:Acel_1938 DegT/DnrJ/EryC1/StrS aminotransferase YP_003119164.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NmrA family protein; KEGG: aau:AAur_2151 UDP-glucose 4- epimerase YP_003119165.1 PFAM: oxidoreductase domain protein; semialdehyde dehydrogenase NAD - binding; oxidoreductase domain; KEGG: ace:Acel_1937 oxidoreductase domain- containing protein YP_003119166.1 KEGG: fra:Francci3_3854 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase YP_003119167.1 PFAM: glycosyl transferase family 2; KEGG: pca:Pcar_0885 glycosyltransferase YP_003119168.1 PFAM: polysaccharide deacetylase; KEGG: msm:MSMEG_5962 glycosyl transferase, family protein 2 YP_003119169.1 KEGG: bpy:Bphyt_4458 membrane glycoprotein YP_003119170.1 KEGG: gur:Gura_2335 hypothetical protein YP_003119171.1 PFAM: PHP domain protein; KEGG: mla:Mlab_1674 hypothetical protein YP_003119172.1 PFAM: glycosyl transferase family 2; KEGG: ace:Acel_1912 glycosyl transferase YP_003119173.1 PFAM: glycosyl transferase group 1; KEGG: cau:Caur_0890 glycosyl transferase group 1 YP_003119174.1 PFAM: glycosyl transferase family 2; KEGG: fre:Franean1_6545 glycosyl transferase YP_003119175.1 PFAM: glycosyl transferase group 1; KEGG: sco:SCO0383 hypothetical protein YP_003119177.1 PFAM: silent information regulator protein Sir2; KEGG: sco:SCO0452 SIR2-like regulatory protein YP_003119178.1 PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: fre:Franean1_0633 hypothetical protein YP_003119179.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; SMART: AAA ATPase; KEGG: fre:Franean1_0634 ATPase YP_003119180.1 PFAM: protein of unknown function DUF58; KEGG: fre:Franean1_3803 hypothetical protein YP_003119181.1 PFAM: transglutaminase; SMART: transglutaminase; KEGG: stp:Strop_2914 transglutaminase domain- containing protein YP_003119182.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: saq:Sare_0938 peptidase S8 and S53 subtilisin kexin sedolisin YP_003119183.1 PFAM: Fibronectin type III domain protein; SMART: serine/threonine protein kinase; Fibronectin type III domain protein; KEGG: similar to gamma-aminobutyric acid A receptor, epsilon YP_003119184.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase AAA; KEGG: stp:Strop_0474 cell divisionFtsK/SpoIIIE YP_003119185.1 TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: sen:SACE_5517 integral membrane protein YP_003119186.1 PFAM: protein of unknown function DUF690; KEGG: stp:Strop_1440 hypothetical protein YP_003119188.1 KEGG: cef:CE0583 hypothetical protein YP_003119190.1 KEGG: mva:Mvan_1264 triple helix repeat-containing collagen YP_003119191.1 KEGG: stp:Strop_0481 hypothetical protein YP_003119192.1 KEGG: sen:SACE_1345 hypothetical protein YP_003119193.1 KEGG: sma:SAV_4094 hypothetical protein YP_003119194.1 KEGG: saq:Sare_4828 hypothetical protein YP_003119195.1 KEGG: saq:Sare_4828 hypothetical protein YP_003119196.1 PFAM: glycosyl transferase family 2; KEGG: pcu:pc0452 hypothetical protein YP_003119197.1 PFAM: Collagen triple helix repeat; KEGG: bld:BLi00801 hypothetical protein YP_003119198.1 PFAM: TetR family transcriptional regulator; KEGG: scl:sce7880 TetR family transcriptional regulator YP_003119199.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: rxy:Rxyl_2705 monooxygenase, FAD-binding protein YP_003119200.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: mjl:Mjls_0823 DNA mismatch endonuclease vsr YP_003119201.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rxy:Rxyl_1265 transcriptional regulator, XRE family with cupin sensor YP_003119202.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: xop:PXO_04735 DNA (cytosine-5)- methyltransferase PliMCI YP_003119203.1 KEGG: fal:FRAAL5513 hypothetical protein YP_003119204.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: mbb:BCG_3860 transposase YP_003119205.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: fra:Francci3_4216 transposase IS116/IS110/IS902 YP_003119206.1 KEGG: shn:Shewana3_0504 hypothetical protein YP_003119207.1 KEGG: cdf:CD0439 hypothetical protein YP_003119208.1 PFAM: NUDIX hydrolase; KEGG: fal:FRAAL1408 hypothetical protein YP_003119210.1 SMART: helix-turn-helix domain protein; KEGG: saq:Sare_2462 XRE family transcriptional regulator YP_003119213.1 KEGG: pzu:PHZ_c2386 hypothetical protein YP_003119214.1 PFAM: UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: tfu:Tfu_2943 GntR family transcriptional regulator YP_003119216.1 KEGG: fal:FRAAL5448 hypothetical protein YP_003119218.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: fra:Francci3_1028 cell divisionFtsK/SpoIIIE YP_003119219.1 KEGG: fre:Franean1_5326 replication initiator protein YP_003119220.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: sco:SCO3996 excisionase YP_003119221.1 KEGG: sco:SCO3862 hypothetical protein YP_003119222.1 PFAM: NLP/P60 protein; KEGG: sma:SAV_6062 NLP/P60-family protein YP_003119223.1 KEGG: tfu:Tfu_0020 hypothetical protein YP_003119225.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: ace:Acel_2022 NAD(P) transhydrogenase subunit alpha YP_003119226.1 KEGG: ace:Acel_2021 NAD/NADP transhydrogenase alpha subunit-like YP_003119227.1 PFAM: NAD(P) transhydrogenase subunit beta; KEGG: ace:Acel_2020 NAD(P) transhydrogenase subunit beta YP_003119228.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_003119230.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: art:Arth_0645 tRNA-adenosine deaminase YP_003119231.1 KEGG: mmi:MMAR_4450 hypothetical protein YP_003119232.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: integrase family protein; regulatory protein MerR; KEGG: sen:SACE_0464 integrase (recombinase) YP_003119234.1 KEGG: fra:Francci3_1687 hypothetical protein YP_003119235.1 KEGG: fre:Franean1_2544 hypothetical protein YP_003119236.1 KEGG: fre:Franean1_2741 hypothetical protein YP_003119237.1 KEGG: fra:Francci3_1691 hypothetical protein YP_003119238.1 KEGG: fra:Francci3_1692 hypothetical protein YP_003119239.1 KEGG: fre:Franean1_2744 type IV secretory pathway VirB4 protein-like protein YP_003119240.1 KEGG: fre:Franean1_6729 type IV secretory pathway VirD4 protein-like protein YP_003119241.1 KEGG: fre:Franean1_2550 hypothetical protein YP_003119242.1 PFAM: NLP/P60 protein; KEGG: sma:SAV_4083 secreted transglycosylase YP_003119244.1 KEGG: sgr:SGR_2893 hypothetical protein YP_003119245.1 SMART: helix-turn-helix domain protein; KEGG: sbm:Shew185_0740 phage repressor YP_003119246.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rha:RHA1_ro10036 repressor protein YP_003119247.1 PFAM: ATP-binding region ATPase domain protein; KEGG: tfu:Tfu_2295 hypothetical protein YP_003119249.1 SMART: helix-turn-helix domain protein; KEGG: stp:Strop_3359 helix-turn-helix domain- containing protein YP_003119250.1 PFAM: flavoprotein; KEGG: tfu:Tfu_0396 hypothetical protein YP_003119251.1 KEGG: sma:SAV_3139 hypothetical protein YP_003119252.1 KEGG: fre:Franean1_2587 response regulator receiver/SARP domain-containing protein YP_003119253.1 PFAM: peptidoglycan-binding LysM; KEGG: fre:Franean1_2587 response regulator receiver/SARP domain-containing protein YP_003119254.1 KEGG: fra:Francci3_1731 hypothetical protein YP_003119255.1 PFAM: TadE family protein; KEGG: fra:Francci3_1733 hypothetical protein YP_003119257.1 PFAM: type II secretion system protein; KEGG: fre:Franean1_2592 type II secretion system protein YP_003119258.1 PFAM: type II secretion system protein; KEGG: fre:Franean1_2593 integral membrane protein YP_003119259.1 PFAM: type II secretion system protein E; KEGG: fra:Francci3_1736 type II secretion system protein E YP_003119260.1 PFAM: SAF domain protein; KEGG: fra:Francci3_1738 hypothetical protein YP_003119261.1 KEGG: fra:Francci3_1739 ATP/GTP-binding protein YP_003119262.1 KEGG: fre:Franean1_2598 hypothetical protein YP_003119263.1 PFAM: GntR family transcriptional regulator; NUDIX hydrolase; SMART: GntR family transcriptional regulator; KEGG: sgr:SGR_2888 hypothetical protein YP_003119264.1 KEGG: fre:Franean1_4645 hypothetical protein YP_003119265.1 PFAM: pentapeptide repeat protein; KEGG: fre:Franean1_6336 pentapeptide repeat- containing protein YP_003119266.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: sgr:SGR_1749 heavy metal reductase YP_003119267.1 PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: aau:AAur_pTC20061 arsenate reductase YP_003119268.1 PFAM: major intrinsic protein; KEGG: stp:Strop_0634 low molecular weight phosphotyrosine protein phosphatase YP_003119269.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: sgr:SGR_1747 ArsR family transcriptional regulator YP_003119270.1 PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_0632 major facilitator transporter YP_003119271.1 PFAM: peptidase M28; FAD dependent oxidoreductase; peptidase M20; KEGG: stp:Strop_0633 FAD dependent oxidoreductase YP_003119272.1 KEGG: hypothetical protein LOC100044153 YP_003119274.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: saq:Sare_3175 ArsR family transcriptional regulator YP_003119275.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: saq:Sare_0073 ArsR family transcriptional regulator YP_003119278.1 KEGG: cau:Caur_0201 beta strand repeat-containing protein YP_003119279.1 KEGG: fra:Francci3_0119 signal transduction protein YP_003119280.1 PFAM: transposase mutator type; KEGG: sma:SAV_347 IS256 family transposase YP_003119281.1 TIGRFAM: hypothetical protein; KEGG: sgr:SGR_3450 rhs/YD repeat-containing protein YP_003119282.1 KEGG: stp:Strop_1337 hypothetical protein YP_003119283.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sma:SAV_757 hypothetical protein YP_003119286.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sco:SCO5862 two-component regulator CutR YP_003119287.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sgr:SGR_3794 two-component system sensor kinase YP_003119288.1 PFAM: peptidase S53 propeptide; KEGG: sma:SAV_5949 serine protease YP_003119291.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppg:PputGB1_2166 major facilitator transporter YP_003119292.1 TIGRFAM: hypothetical protein; PFAM: YD repeat-containing protein; KEGG: sgr:SGR_3450 rhs/hypothetical protein YP_003119294.1 PFAM: alpha/beta hydrolase fold protein; KEGG: kra:Krad_2119 alpha/beta hydrolase fold protein YP_003119295.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: kra:Krad_2118 MarR family transcriptional regulator YP_003119296.1 KEGG: sma:SAV_20 hypothetical protein YP_003119297.1 TIGRFAM: hypothetical protein; PFAM: YD repeat-containing protein; KEGG: sgr:SGR_3450 rhs/hypothetical protein YP_003119298.1 PFAM: hypothetical protein; KEGG: fre:Franean1_0249 helix-turn-helix type 11 domain-containing protein YP_003119299.1 PFAM: Epoxide hydrolase domain protein; KEGG: stp:Strop_2711 epocide hydrolase domain- containing protein YP_003119301.1 PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_4432 major facilitator transporter YP_003119302.1 PFAM: DeoR family transcriptional regulator; SMART: DeoR family transcriptional regulator; KEGG: tfu:Tfu_1854 regulatory protein, DeoR YP_003119303.1 PFAM: NHL repeat containing protein; KEGG: syd:Syncc9605_0903 NHL repeat-containing protein YP_003119304.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_003119305.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rha:RHA1_ro00997 short chain dehydrogenase YP_003119306.1 PFAM: TetR family transcriptional regulator; KEGG: sen:SACE_6254 hypothetical protein YP_003119307.1 PFAM: protein of unknown function DUF302; KEGG: bbt:BBta_3395 hypothetical protein YP_003119308.1 PFAM: ABC transporter; binding-protein- dependent transporters inner membrane component; transport-associated OB domain protein; SMART: ATPase AAA; KEGG: bxe:Bxe_B1189 ABC molybdenum transporter fused ATPase and inner membrane subunits YP_003119309.1 KEGG: bvi:Bcep1808_7470 extracellular solute- binding protein YP_003119310.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: TOBE domain protein; regulatory protein MerR; KEGG: stp:Strop_2544 DNA binding domain-containing protein YP_003119311.1 KEGG: sma:SAV_1717 hypothetical protein YP_003119312.1 KEGG: tde:TDE0502 ankyrin repeat-containing protein YP_003119315.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sen:SACE_0966 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase YP_003119316.1 TIGRFAM: glutamate decarboxylase; PFAM: pyridoxal-dependent decarboxylase; KEGG: aau:AAur_3971 glutamate decarboxylase YP_003119317.1 KEGG: sgr:SGR_5828 chaplin YP_003119318.1 PFAM: TetR family transcriptional regulator; KEGG: nfa:nfa31030 transcriptional regulator YP_003119320.1 PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0078 major facilitator transporter YP_003119321.1 PFAM: YCII-related; KEGG: fre:Franean1_6623 DGPFAETKE family protein YP_003119322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sgr:SGR_628 RNA polymerase ECF-subfamily sigma factor YP_003119324.1 KEGG: sco:SCO4541 hypothetical protein YP_003119325.1 KEGG: stp:Strop_2867 hypothetical protein YP_003119326.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase AAA; SMART: AAA ATPase; KEGG: stp:Strop_2868 ATPase YP_003119327.1 KEGG: sco:SCO1307 hypothetical protein YP_003119329.1 PFAM: peptidase S53 propeptide; peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sma:SAV_5949 serine protease YP_003119330.1 KEGG: REL2; mitochondrial RNA ligase 2; K01973 YP_003119331.1 TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: sma:SAV_909 ECF subfamily RNA polymerase sigma factor YP_003119332.1 KEGG: rca:Rcas_1050 hypothetical protein YP_003119333.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mlo:mll8195 alcohol dehydrogenase YP_003119334.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ade:Adeh_3526 XRE family transcriptional regulator YP_003119335.1 KEGG: hma:pNG7043 metabolite transporter; TIGRFAM: sugar transporter; PFAM: general substrate transporter; major facilitator superfamily MFS_1 YP_003119336.1 KEGG: afw:Anae109_0597 glucose-6-phosphate 1- dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase YP_003119337.1 PFAM: aldose 1-epimerase; KEGG: nca:Noca_2454 aldose 1-epimerase YP_003119338.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: sen:SACE_0685 NmrA-like YP_003119339.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: nfa:nfa29890 transcriptional regulator YP_003119340.1 KEGG: stp:Strop_1435 hypothetical protein YP_003119341.1 PFAM: Tetracyclin repressor domain protein; TetR family transcriptional regulator; KEGG: sco:SCO1718 regulator YP_003119342.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: mav:MAV_3687 hydrolase CocE/NonD family protein YP_003119343.1 PFAM: TetR family transcriptional regulator; KEGG: smd:Smed_4442 TetR family transcriptional regulator YP_003119344.1 PFAM: OsmC family protein; KEGG: sgr:SGR_6917 hypothetical protein YP_003119345.1 KEGG: lbl:LBL_2852 hypothetical protein YP_003119346.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_1462 transmembrane efflux protein YP_003119347.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: nfa:nfa2040 transcriptional regulator YP_003119348.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: fal:FRAAL6385 signal peptide YP_003119349.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fre:Franean1_4765 AraC family transcriptional regulator YP_003119351.1 PFAM: TetR family transcriptional regulator; KEGG: saq:Sare_2399 TetR family transcriptional regulator YP_003119352.1 KEGG: spt6; SH2 domain-containing protein; K11292 transcription elongation factor SPT6 YP_003119353.1 KEGG: sco:SCO4538 hypothetical protein YP_003119354.1 PFAM: amidohydrolase; amidohydrolase; KEGG: rxy:Rxyl_0206 hypothetical protein YP_003119355.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: kra:Krad_1049 MarR family transcriptional regulator YP_003119356.1 PFAM: methyltransferase type 12; methyltransferase type 11; thiopurine S-methyltransferase; KEGG: sgr:SGR_3078 methyltransferase YP_003119357.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: sgr:SGR_3079 transcriptional regulator YP_003119358.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: nfa:nfa27380 sigma factor YP_003119359.1 KEGG: fre:Franean1_4815 hypothetical protein YP_003119360.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: nfa:nfa45130 hypothetical protein YP_003119361.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO0375 integral membrane transporter YP_003119362.1 TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase; KEGG: saq:Sare_0269 RecD/TraA family helicase YP_003119363.1 PFAM: protein of unknown function DUF307; KEGG: fre:Franean1_6422 hypothetical protein YP_003119364.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: sgr:SGR_4299 molybdopterin biosynthesis protein YP_003119365.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sgr:SGR_4300 ribosomal-protein- alanine N-acetyltransferase YP_003119366.1 KEGG: sgr:SGR_4301 hypothetical protein YP_003119367.1 PFAM: beta-lactamase; KEGG: sgr:SGR_6869 beta-lactamase YP_003119369.1 PFAM: ArsR family transcriptional regulator; KEGG: saq:Sare_3885 ArsR family transcriptional regulator YP_003119371.1 KEGG: sgr:SGR_2927 two-component system sensor kinase YP_003119372.1 PFAM: MMPL domain protein; KEGG: sco:SCO6091 integral membrane protein YP_003119373.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sma:SAV_7424 ECF subfamily RNA polymerase sigma factor YP_003119374.1 PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4- dehydrorhamnose reductase; KEGG: rha:RHA1_ro04727 hypothetical protein YP_003119375.1 KEGG: fal:FRAAL4233 hypothetical protein YP_003119376.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_7182 ECF subfamily RNA polymerase sigma-24 factor YP_003119377.1 PFAM: UspA domain protein; KEGG: rha:RHA1_ro05195 universal stress protein YP_003119379.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; aminoglycoside phosphotransferase; pyrrolo-quinoline quinone; SMART: serine/threonine protein kinase; tyrosine protein kinase; pyrrolo-quinoline quinone; KEGG: fal:FRAAL0578 serine/threonine protein kinase YP_003119380.1 KEGG: mav:MAV_1293 hypothetical protein YP_003119381.1 PFAM: protein of unknown function DUF1212; KEGG: sgr:SGR_4082 hypothetical protein YP_003119382.1 PFAM: polysaccharide deacetylase; KEGG: cdi:DIP0225 secreted polysaccharide deacetylase YP_003119383.1 PFAM: PKD domain containing protein; cell wall binding repeat 2-containing protein; KEGG: ace:Acel_1679 protease-like YP_003119384.1 PFAM: PKD domain containing protein; cell wall binding repeat 2-containing protein; SMART: PKD domain containing protein; KEGG: ace:Acel_1679 protease-like YP_003119385.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: fal:FRAAL3176 lyase (cysteine synthase/cystathionine beta-synthase family protein) YP_003119386.1 KEGG: sco:SCO2221 hypothetical protein YP_003119387.1 PFAM: short-chain dehydrogenase/reductase SDR; alpha/beta hydrolase fold protein; KR domain protein; NAD- dependent epimerase/dehydratase; KEGG: sen:SACE_3554 short chain dehydrogenase YP_003119388.1 KEGG: sen:SACE_3553 hypothetical protein YP_003119389.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_5284 TetR family transcriptional regulator YP_003119390.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_1454 RNA polymerase ECF sigma factor YP_003119391.1 KEGG: proteophosphoglycan 5 YP_003119392.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_003119393.1 PFAM: glutathionylspermidine synthase; KEGG: sgr:SGR_2704 glutathionylspermidine synthase YP_003119394.1 KEGG: hypothetical protein YP_003119395.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mjl:Mjls_3242 nitrite reductase (NAD(P)H), large subunit YP_003119396.1 PFAM: AMP-dependent synthetase and ligase; KEGG: fal:FRAAL3521 cyclohex-1-ene-1- carboxylate:CoA ligase YP_003119397.1 PFAM: Luciferase-like monooxygenase; KEGG: sgr:SGR_4224 hypothetical protein YP_003119398.1 PFAM: isochorismatase hydrolase; KEGG: mav:MAV_1602 isochorismatase family protein YP_003119399.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sma:SAV_3839 acyl-CoA dehydrogenase YP_003119400.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sgr:SGR_3054 acyl-CoA dehydrogenase YP_003119401.1 KEGG: saq:Sare_4971 hypothetical protein YP_003119402.1 PFAM: type II secretion system protein E; KEGG: sco:SCO4526 protein kinase YP_003119403.1 PFAM: peptidoglycan-binding LysM; KEGG: fra:Francci3_0409 peptidoglycan-binding LysM YP_003119404.1 KEGG: sgr:SGR_3052 cyclase YP_003119405.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sgr:SGR_3051 short chain dehydrogenase YP_003119406.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: sgr:SGR_3049 alcohol dehydrogenase YP_003119407.1 KEGG: stp:Strop_3325 hypothetical protein YP_003119408.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: sgr:SGR_3042 oxidoreductase YP_003119409.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: sgr:SGR_3040 enoyl-CoA hydratase YP_003119410.1 KEGG: sgr:SGR_3039 acyl-CoA synthetase YP_003119411.1 PFAM: AMP-dependent synthetase and ligase; KEGG: fal:FRAAL3421 acyl-CoA synthetase YP_003119412.1 PFAM: TetR family transcriptional regulator; KEGG: sgr:SGR_3022 TetR family transcriptional regulator YP_003119413.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: stp:Strop_2633 short chain dehydrogenase YP_003119414.1 KEGG: fal:FRAAL0890 hypothetical protein YP_003119415.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: sgr:SGR_3017 enoyl-CoA hydratase/isomerase YP_003119416.1 PFAM: protein of unknown function DUF35; KEGG: sma:SAV_3808 hypothetical protein YP_003119417.1 KEGG: sgr:SGR_3015 nonspecific lipid- transfer protein YP_003119418.1 activates fatty acids by binding to coenzyme A YP_003119419.1 KEGG: GD18620 gene product from transcript GD18620- RA YP_003119420.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: stp:Strop_0077 ECF subfamily RNA polymerase sigma-24 factor YP_003119421.1 KEGG: bph:Bphy_3722 hypothetical protein YP_003119422.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase; catalyzes radical-mediated transfer of hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); functions in F420 biosynthesis YP_003119423.1 KEGG: sgr:SGR_4231 hypothetical protein YP_003119424.1 PFAM: Luciferase-like monooxygenase; KEGG: sgr:SGR_4224 hypothetical protein YP_003119425.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sma:SAV_3801 dehydrogenase YP_003119426.1 PFAM: Luciferase-like monooxygenase; KEGG: mjl:Mjls_3337 fis family transcriptional regulator YP_003119427.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: mab:MAB_0560 hypothetical protein YP_003119428.1 KEGG: bxe:Bxe_A1060 molybdopterin-guanine dinucleotide biosynthesis protein A YP_003119429.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sgr:SGR_4254 short chain dehydrogenase YP_003119430.1 KEGG: similar to hCG2041257 YP_003119431.1 KEGG: sgr:SGR_4255 hypothetical protein YP_003119432.1 KEGG: sgr:SGR_3066 hypothetical protein YP_003119433.1 KEGG: sma:SAV_3850 transcriptional regulator YP_003119434.1 PFAM: Bifunctional DNA primase/polymerase; KEGG: sma:SAV_3851 hypothetical protein YP_003119435.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: sco:SCO1860 secreted protein YP_003119436.1 PFAM: iron dependent repressor; SMART: iron dependent repressor; regulatory protein Crp; KEGG: sgr:SGR_3072 iron dependent regulatory protein YP_003119437.1 PFAM: ArsR family transcriptional regulator; SMART: ArsR family transcriptional regulator; KEGG: sgr:SGR_2124 ArsR family transcriptional regulator YP_003119438.1 PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_566 major facilitator superfamily permease YP_003119439.1 KEGG: hau:Haur_2910 peptidase M48 Ste24p YP_003119440.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: ace:Acel_0118 phage SPO1 DNA polymerase- related protein YP_003119441.1 KEGG: tfu:Tfu_1381 hypothetical protein YP_003119442.1 KEGG: ace:Acel_0116 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding YP_003119443.1 forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle YP_003119444.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sgr:SGR_2995 RNA polymerase ECF-subfamily sigma factor YP_003119446.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_003119447.1 TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; KEGG: sma:SAV_3892 hypothetical protein YP_003119448.1 PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: sgr:SGR_3162 major facilitator superfamily permease YP_003119450.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_003119452.1 PFAM: peptidase S53 propeptide; peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: sma:SAV_5949 serine protease YP_003119453.1 PFAM: beta-lactamase; KEGG: mbb:BCG_1769c penicillin-binding protein YP_003119454.1 PFAM: aminotransferase class I and II; KEGG: sma:SAV_6752 transcriptional regulator YP_003119455.1 PFAM: aminotransferase class V; KEGG: scl:sce8911 class-V aminotransferase YP_003119456.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_3157 export protein YP_003119457.1 KEGG: nfa:pnf2890 hypothetical protein YP_003119458.1 PFAM: beta-lactamase; KEGG: sco:SCO5066 beta-lactamase YP_003119459.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sen:SACE_3670 XRE family transcriptional regulator YP_003119460.1 KEGG: msm:MSMEG_2585 hypothetical protein YP_003119461.1 PFAM: transcriptional regulator PadR family protein; KEGG: bma:BMA2974 PadR family transcriptional regulator YP_003119462.1 KEGG: fal:FRAAL6637 hypothetical protein YP_003119463.1 PFAM: metallophosphoesterase; KEGG: sma:SAV_4263 serine/threonine protein phosphatase YP_003119464.1 KEGG: vpa:VPA1426 hypothetical protein YP_003119465.1 KEGG: hypothetical protein; K01238 YP_003119466.1 PFAM: protein of unknown function DUF664; KEGG: stp:Strop_1293 hypothetical protein YP_003119467.1 TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; KEGG: ace:Acel_0052 thiamine biosynthesis protein ThiC YP_003119468.1 KEGG: fre:Franean1_0713 hypothetical protein YP_003119469.1 KEGG: smt:Smal_3822 hypothetical protein YP_003119470.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pzu:PHZ_c3472 transcriptional regulator, Cro/CI family YP_003119471.1 PFAM: band 7 protein; SMART: band 7 protein; KEGG: sma:SAV_7344 hypothetical protein YP_003119472.1 KEGG: sma:SAV_4269 membrane spanning protein YP_003119473.1 PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: fal:FRAAL1621 MarR family transcriptional regulator YP_003119474.1 PFAM: membrane protein of unknown function; KEGG: sco:SCO3922 hypothetical protein YP_003119475.1 PFAM: fructosamine kinase; aminoglycoside phosphotransferase; KEGG: nca:Noca_4518 aminoglycoside phosphotransferase YP_003119476.1 KEGG: sgr:SGR_4471 hypothetical protein YP_003119477.1 KEGG: sgr:SGR_5008 hypothetical protein YP_003119478.1 KEGG: similar to C6orf205 protein YP_003119479.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: sma:SAV_3487 hypothetical protein YP_003119480.1 TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: kra:Krad_0027 sortase family protein YP_003119481.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sgr:SGR_3785 acyl-CoA dehydrogenase YP_003119482.1 KEGG: sma:SAV_4391 hypothetical protein YP_003119483.1 PFAM: protein of unknown function DUF820; KEGG: sen:SACE_0512 hypothetical protein YP_003119484.1 KEGG: cvi:CV_1325 thiol-disulfide isomerase and thioredoxin YP_003119485.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fal:FRAAL1483 ABC transporter ATP-binding protein YP_003119486.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fra:Francci3_0854 ABC transporter YP_003119487.1 PFAM: inner-membrane translocator; KEGG: fre:Franean1_5664 inner-membrane translocator YP_003119488.1 KEGG: sma:SAV_6531 hypothetical protein YP_003119489.1 KEGG: sma:SAV_6532 hypothetical protein YP_003119490.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: sgr:SGR_3167 integral membrane ATPase YP_003119491.1 KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein YP_003119492.1 KEGG: ace:Acel_1679 protease-like YP_003119493.1 PFAM: protein of unknown function DUF1707; KEGG: sgr:SGR_411 hypothetical protein YP_003119494.1 PFAM: GtrA family protein; KEGG: sen:SACE_2812 hypothetical protein YP_003119495.1 KEGG: lpl:lp_1567 integral membrane protein YP_003119496.1 PFAM: glycosyl transferase family 2; KEGG: sco:SCO4875 sugar transferase YP_003119497.1 PFAM: hypothetical protein; KEGG: ace:Acel_1461 cell wall binding repeat 2- containing protein YP_003119498.1 TIGRFAM: ATPase P; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: sco:SCO1046 metal transporter ATPase YP_003119499.1 PFAM: Domain of unknown function DUF1906; KEGG: sma:SAV_6085 hypothetical protein YP_003119500.1 KEGG: Hypothetical protein CBG04553 YP_003119501.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sgr:SGR_3603 RNA polymerase ECF-subfamily sigma factor YP_003119502.1 PFAM: AMP-dependent synthetase and ligase; KEGG: saq:Sare_4358 acyl-CoA synthetase YP_003119503.1 KEGG: hypothetical protein LOC691301 YP_003119504.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_1454 RNA polymerase ECF sigma factor YP_003119506.1 KEGG: fra:Francci3_0852 hypothetical protein YP_003119507.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sen:SACE_5745 iron ABC transporter ATP- binding protein YP_003119508.1 PFAM: transporter permease; KEGG: tfu:Tfu_0657 ABC-type transporter permease YP_003119509.1 PFAM: periplasmic binding protein; KEGG: stp:Strop_4081 periplasmic binding protein YP_003119510.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: sco:SCO4930 enoyl-CoA hydratase YP_003119511.1 KEGG: sma:SAV_5428 hypothetical protein YP_003119512.1 PFAM: alpha/beta hydrolase fold protein; KEGG: sgr:SGR_3329 hydrolase YP_003119513.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: nfa:nfa29510 hypothetical protein YP_003119514.1 PFAM: colicin V production protein; peptidase S1 and S6 chymotrypsin/Hap; KEGG: sco:SCO3567 serine protease YP_003119515.1 PFAM: NUDIX hydrolase; KEGG: sma:SAV_4594 hypothetical protein YP_003119516.1 KEGG: sgr:SGR_3332 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; iron-sulfur cluster loop YP_003119517.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sco:SCO0229 short chain dehydrogenase YP_003119518.1 PFAM: TetR family transcriptional regulator; KEGG: sco:SCO0230 TetR family transcriptional regulator YP_003119519.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_003119520.1 KEGG: sco:SCO5949 hypothetical protein YP_003119521.1 KEGG: nfa:nfa21820 hypothetical protein YP_003119522.1 KEGG: sma:SAV_2940 hypothetical protein YP_003119523.1 PFAM: Luciferase-like monooxygenase; KEGG: fal:FRAL5465 5,10- methylenetetrahydromethanopterin reductase YP_003119524.1 TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: rha:RHA1_ro03512 sigma factor, sigma 70 type, group 4 YP_003119525.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: sen:SACE_4777 alkylhydroperoxidase YP_003119526.1 KEGG: sco:SCO4405 ABC transporter ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA YP_003119527.1 PFAM: ABC transporter; KEGG: rha:RHA1_ro02603 multidrug ABC transporter permease YP_003119528.1 PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: fre:Franean1_0374 MerR family transcriptional regulator YP_003119529.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: saq:Sare_0956 RNA polymerase ECF-subfamily sigma factor YP_003119530.1 PFAM: YCII-related; KEGG: saq:Sare_0955 DGPFAETKE family protein YP_003119531.1 PFAM: peptidase S41; SMART: peptidase S41; KEGG: gvi:glr2547 similar to interphotoreceptor retinoid-binding protein YP_003119532.1 KEGG: fal:FRAAL5476 hypothetical protein YP_003119533.1 KEGG: rha:RHA1_ro01710 hypothetical protein YP_003119534.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: sma:SAV_788 hypothetical protein YP_003119535.1 KEGG: sgr:SGR_6883 hypothetical protein YP_003119536.1 KEGG: cms:CMS_2692 hypothetical protein YP_003119537.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: aau:AAur_2040 NADP-dependent alcohol dehydrogenase YP_003119538.1 PFAM: GntR family transcriptional regulator; SMART: GntR family transcriptional regulator; KEGG: sgr:SGR_3939 GntR family transcriptional regulator YP_003119539.1 PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sen:SACE_7194 ABC transporter ATP-binding protein YP_003119540.1 KEGG: sen:SACE_7193 hypothetical protein YP_003119541.1 PFAM: GntR family transcriptional regulator; aminotransferase class I and II; SMART: GntR family transcriptional regulator; KEGG: sma:SAV_4231 GntR family transcriptional regulator YP_003119542.1 PFAM: metallophosphoesterase; KEGG: sco:SCO6075 hypothetical protein YP_003119543.1 TIGRFAM: small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; KEGG: sma:SAV_7507 tetracycline resistance protein YP_003119544.1 KEGG: rha:RHA1_ro02634 hypothetical protein YP_003119545.1 PFAM: N-acetyltransferase; KEGG: sgr:SGR_2553 arylamine N-acetyltransferase YP_003119546.1 PFAM: aminoglycoside phosphotransferase; protein of unknown function DUF227; KEGG: kra:Krad_2812 hypothetical protein YP_003119547.1 PFAM: TetR family transcriptional regulator; Tetracyclin repressor domain protein; KEGG: scl:sce7023 TetR family transcriptional regulator YP_003119548.1 TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_3561 major facilitator superfamily permease YP_003119549.1 PFAM: general substrate transporter; major facilitator superfamily MFS_1; KEGG: sgr:SGR_1196 major facilitator superfamily permease YP_003119550.1 PFAM: Epoxide hydrolase domain protein; KEGG: sen:SACE_3441 epoxide hydrolase YP_003119551.1 PFAM: TetR family transcriptional regulator; KEGG: fra:Francci3_4137 TetR family transcriptional regulator YP_003119552.1 PFAM: protein of unknown function DUF347; KEGG: afe:Lferr_1967 protein of unknown function DUF347 YP_003119553.1 PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: sco:SCO3757 two component system sensor kinase YP_003119554.1 PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sgr:SGR_5123 two-component system response regulator YP_003119555.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; KEGG: fra:Francci3_3376 alkylhydroperoxidase YP_003119556.1 PFAM: GntR family transcriptional regulator; aminotransferase class I and II; SMART: GntR family transcriptional regulator; KEGG: sma:SAV_4231 GntR family transcriptional regulator YP_003119557.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sma:SAV_4592 transcriptional regulator YP_003119558.1 PFAM: Anion-transporting ATPase; KEGG: sma:SAV_4585 ion-transporting ATPase YP_003119559.1 PFAM: Anion-transporting ATPase; KEGG: sgr:SGR_3338 anion-transporting ATPase YP_003119560.1 PFAM: serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sen:SACE_5901 serine/threonine protein kinase YP_003119561.1 KEGG: sgr:SGR_3337 hypothetical protein YP_003119562.1 PFAM: endoribonuclease L-PSP; KEGG: ace:Acel_1999 endoribonuclease L-PSP YP_003119563.1 PFAM: NUDIX hydrolase; KEGG: sgr:SGR_3335 hypothetical protein YP_003119564.1 PFAM: beta-lactamase; KEGG: sma:SAV_4590 hydrolase YP_003119565.1 PFAM: transcription factor WhiB; KEGG: sgr:SGR_3340 WhiB family transcriptional regulator YP_003119566.1 PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: sma:SAV_4583 penicillin-binding protein YP_003119568.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; KEGG: sen:SACE_7190 short-chain dehydrogenase/reductase SDR YP_003119569.1 KEGG: dth:DICTH_1943 hypothetical protein YP_003119570.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: saq:Sare_0800 ECF subfamily RNA polymerase sigma-24 factor YP_003119571.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sgr:SGR_5355 secreted protein YP_003119572.1 PFAM: integrase family protein; KEGG: fal:FRAAL6356 tyrosine recombinase XerD YP_003119575.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: sbl:Sbal_4353 transcriptional regulator YP_003119576.1 KEGG: saq:Sare_3100 hypothetical protein YP_003119577.1 KEGG: sma:SAV_2167 hypothetical protein YP_003119580.1 KEGG: tfu:Tfu_2935 hypothetical protein YP_003119582.1 KEGG: mbb:BCG_0433 hypothetical protein YP_003119583.1 KEGG: sgr:SGR_7062t hypothetical protein YP_003119585.1 KEGG: msm:MSMEG_3136 heme peroxidase superfamily protein YP_003119586.1 PFAM: NLP/P60 protein; KEGG: sco:SCO3511 lipoprotein YP_003119587.1 KEGG: saq:Sare_3239 hypothetical protein YP_003119588.1 KEGG: stp:Strop_4199 hypothetical protein YP_003119589.1 KEGG: saq:Sare_4646 hypothetical protein YP_003119590.1 KEGG: mgi:Mflv_1133 hypothetical protein YP_003119592.1 KEGG: fre:Franean1_7295 hypothetical protein YP_003119593.1 KEGG: art:Arth_4504 hypothetical protein YP_003119594.1 KEGG: fal:FRAAL0036 integral membrane protein YP_003119595.1 KEGG: nca:Noca_4709 hypothetical protein YP_003119596.1 KEGG: art:Arth_4273 conjugative transfer gene complex protein YP_003119598.1 PFAM: DnaB domain protein helicase; KEGG: sco:SCO3528 hypothetical protein YP_003119600.1 KEGG: sgr:SGR_7062t hypothetical protein YP_003119602.1 KEGG: fps:FP1380 hypothetical protein YP_003119603.1 KEGG: sma:SAV_5694 hypothetical protein YP_003119606.1 KEGG: sgr:SGR_277 hypothetical protein YP_003119607.1 PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase; KEGG: fra:Francci3_1128 protein-L-isoaspartate(D- aspartate) O-methyltransferase YP_003119608.1 KEGG: fra:Francci3_0396 hypothetical protein YP_003119609.1 PFAM: aldo/keto reductase; KEGG: fra:Francci3_0395 hypothetical protein YP_003119610.1 PFAM: cupin; KEGG: fra:Francci3_0394 cupin 4 YP_003119612.1 PFAM: phosphoribosyltransferase; KEGG: cau:Caur_1419 xanthine phosphoribosyltransferase YP_003119614.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_1229 acetyltransferase YP_003119615.1 PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_1748 GCN5-related N- acetyltransferase YP_003119616.1 PFAM: amino acid permease-associated region; KEGG: saq:Sare_1731 amino acid permease-associated region YP_003119617.1 KEGG: saq:Sare_1730 hypothetical protein YP_003119618.1 KEGG: fra:Francci3_0395 hypothetical protein YP_003119619.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: saq:Sare_3192 hydrolase YP_003119620.1 KEGG: sco:SCO5337 hypothetical protein YP_003119621.1 PFAM: NUDIX hydrolase; KEGG: mgi:Mflv_3031 NUDIX hydrolase YP_003119622.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: sen:SACE_7007 metal dependent phosphohydrolase YP_003119623.1 KEGG: hma:rrnAC1708 glutamyl-tRNA reductase YP_003119624.1 PFAM: DNA polymerase beta domain protein region; KEGG: dps:DP0272 hypothetical protein YP_003119625.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: stp:Strop_1991 radical SAM domain-containing protein YP_003119626.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: nfa:nfa49430 hypothetical protein YP_003119627.1 PFAM: amidase; KEGG: aav:Aave_0191 amidase YP_003119628.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_003119629.1 PFAM: TrwC relaxase; KEGG: aau:AAur_pTC10080 TraA-like conjugal transfer protein YP_003119630.1 KEGG: predicted protein YP_003119637.1 KEGG: sma:SAP1p73 hypothetical protein YP_003119638.1 KEGG: stp:Strop_0555 hypothetical protein YP_003119639.1 KEGG: sma:SAP1p20 hypothetical protein YP_003119642.1 KEGG: fre:Franean1_6739 hypothetical protein YP_003119643.1 KEGG: sen:SACE_6662 hypothetical protein YP_003119644.1 KEGG: ace:Acel_1476 vitamin B12-dependent ribonucleotide reductase YP_003119648.1 KEGG: fra:Francci3_4019 hypothetical protein YP_003119652.1 KEGG: fra:Francci3_1719 hypothetical protein YP_003119656.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: mab:MAB_4898c single-stranded DNA-binding protein YP_003119657.1 KEGG: sma:SAV_167 hypothetical protein YP_003119658.1 KEGG: mkm:Mkms_6012 hypothetical protein YP_003119659.1 KEGG: pis:Pisl_1790 hypothetical protein YP_003119663.1 SMART: ParB domain protein nuclease; KEGG: cms:CMS_pCS0050 chromosome partitioning protein YP_003119664.1 TIGRFAM: phage/plasmid-related protein TIGR03299; KEGG: nca:Noca_1581 hypothetical protein YP_003119665.1 KEGG: fre:Franean1_2654 hypothetical protein YP_003119666.1 KEGG: sco:SCP1.341 hypothetical protein YP_003119668.1 PFAM: metallophosphoesterase; KEGG: sco:SCO3582 secreted protein YP_003119669.1 KEGG: sma:SAV_4582 hypothetical protein YP_003119670.1 KEGG: saq:Sare_0065 Zn-dependent hydrolase of the beta-lactamase fold-like protein YP_003119671.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: art:Arth_4536 phosphoesterase, PA-phosphatase related YP_003119672.1 PFAM: Penicillinase repressor; KEGG: sco:SCO6358 hypothetical protein YP_003119673.1 PFAM: peptidase M48 Ste24p; peptidase M56 BlaR1; KEGG: fal:FRAAL3683 integral membrane protein YP_003119674.1 KEGG: sma:SAV_5822 hypothetical protein YP_003119675.1 KEGG: sgr:SGR_1052 hypothetical protein YP_003119676.1 KEGG: sco:SCO3612 hypothetical protein YP_003119677.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sco:SCO3613 RNA polymerase sigma factor YP_003119678.1 KEGG: sco:SCO3614 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase dimerisation region; semialdehyde dehydrogenase NAD - binding YP_003119679.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_003119680.1 KEGG: sma:SAV_4558 hypothetical protein YP_003119681.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_003119682.1 PFAM: conserved hypothetical protein; KEGG: fal:FRAAL0611 hypothetical protein YP_003119683.1 KEGG: sco:SCO4067 DNA polymerase III subunits gamma and tau; TIGRFAM: DNA polymerase III subunits gamma and tau; PFAM: ATPase AAA central domain protein; SMART: ATPase AAA YP_003119684.1 KEGG: sma:SAV_7434 hypothetical protein YP_003119685.1 KEGG: ank:AnaeK_3390 MJ0042 family finger-like protein YP_003119686.1 TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sen:SACE_7154 RNA polymerase ECF sigma factor YP_003119687.1 KEGG: sma:SAV_4176 hypothetical protein YP_003119689.1 PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_3682 hypothetical protein YP_003119690.1 KEGG: sgr:SGR_3683 RNA nucleotidyltransferase; TIGRFAM: tRNA adenylyltransferase; metal dependent phophohydrolase; PFAM: polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003119691.1 KEGG: sma:SAV_4300 hypothetical protein YP_003119692.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: sco:SCO3894 transmembrane protein YP_003119693.1 SMART: serine/threonine protein kinase; KEGG: sco:SCO3893 hypothetical protein YP_003119694.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: saq:Sare_5095 ECF subfamily RNA polymerase sigma-24 factor YP_003119695.1 KEGG: sco:SCO3891 hypothetical protein YP_003119696.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sma:SAV_4305 thioredoxin reductase (NADPH) YP_003119697.1 TIGRFAM: thioredoxin; PFAM: thioredoxin domain; KEGG: sco:SCO3889 thioredoxin YP_003119698.1 PFAM: cell wall hydrolase/autolysin; peptidoglycan- binding domain 1 protein; SMART: cell wall hydrolase/autolysin; KEGG: saq:Sare_5099 cell wall hydrolase/autolysin YP_003119699.1 KEGG: kcr:Kcr_1423 hypothetical protein YP_003119700.1 KEGG: scl:sce2330 rRNA methyltransferase YP_003119701.1 PFAM: aminotransferase class I and II; KEGG: nca:Noca_4690 aminotransferase, class I and II YP_003119702.1 KEGG: stp:Strop_4584 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP- grasp; protein of unknown function DUF201 YP_003119703.1 KEGG: sma:SAV_4308 ParB-like protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_003119704.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: sgr:SGR_3693 partitioning or sporulation protein YP_003119705.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_003119706.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: nca:Noca_4696 single-stranded nucleic acid binding R3H domain-containing protein YP_003119707.1 PFAM: hypothetical protein; KEGG: sco:SCO3883 inner membrane protein translocase component YidC YP_003119708.1 PFAM: protein of unknown function DUF37; KEGG: sma:SAV_4313 hypothetical protein YP_003119709.1 PFAM: ribonuclease P protein; KEGG: sgr:SGR_3698 RNase P component YP_003119710.1 TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: sgr:SGR_3699 50S ribosomal protein L34