-- dump date 20140619_030116 -- class Genbank::CDS -- table cds_note -- id note NP_418822.1 identified by match to protein family HMM NP_418823.1 identified by match to PFAM protein family HMM PF01488 NP_418824.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis NP_418825.1 identified by match to TIGR protein family HMM TIGR00573 NP_418826.1 identified by match to PFAM protein family HMM PF00378 NP_418827.1 identified by match to TIGR protein family HMM TIGR00029 NP_418828.1 identified by match to TIGR protein family HMM TIGR00362 NP_418829.1 identified by match to protein family HMM NP_418830.1 identified by match to protein family HMM NP_418831.1 identified by match to protein family HMM NP_418832.1 This protein performs the mismatch recognition step during the DNA repair process NP_418833.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein NP_418834.1 identified by match to TIGR protein family HMM TIGR00582 NP_418835.1 identified by match to protein family HMM NP_418836.1 similar to SP:P30749; identified by sequence similarity NP_418837.1 similar to SP:P30748 PID:42011 GB:U00096 PID:1651357 PID:1787002; identified by sequence similarity NP_418838.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z NP_418841.1 identified by match to protein family HMM NP_418842.1 identified by match to protein family HMM NP_418844.1 similar to SP:P11098 GB:X14202 PID:581142 PID:606302 GB:U00096; identified by sequence similarity NP_418845.1 identified by match to protein family HMM NP_418846.1 identified by match to protein family HMM NP_418848.1 identified by match to protein family HMM NP_418849.1 identified by match to protein family HMM NP_418850.1 identified by match to protein family HMM NP_418851.1 identified by match to protein family HMM NP_418852.1 similar to GB:L42023 PID:1003535 PID:1222247 PID:1204574 SP:Q57534; identified by sequence similarity NP_418854.1 identified by match to PFAM protein family HMM PF01138 NP_418855.1 identified by match to protein family HMM NP_418856.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs NP_418857.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock NP_418858.1 identified by match to PFAM protein family HMM PF01738 NP_418862.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex NP_418864.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination NP_418867.1 identified by match to PFAM protein family HMM PF00719 NP_418869.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine NP_418870.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase NP_418871.1 identified by match to protein family HMM NP_418872.1 identified by match to TIGR protein family HMM TIGR00546 NP_418873.1 identified by match to protein family HMM NP_418875.1 similar to GB:D10391 SP:P31544 PID:285774 GB:U00096 PID:1651507; identified by sequence similarity NP_418876.1 identified by match to PFAM protein family HMM PF01475 NP_418877.1 identified by match to protein family HMM NP_418878.1 identified by match to protein family HMM NP_418880.1 identified by match to PFAM protein family HMM PF00881 NP_418881.1 identified by match to protein family HMM NP_418882.1 identified by match to protein family HMM NP_418883.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_418884.1 identified by match to protein family HMM NP_418885.1 identified by match to protein family HMM NP_418887.1 identified by match to protein family HMM NP_418889.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate NP_418890.1 identified by match to PFAM protein family HMM PF00814 NP_418891.1 identified by match to TIGR protein family HMM TIGR00212 NP_418895.1 identified by match to PFAM protein family HMM PF00725 NP_418896.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation NP_418898.1 identified by match to PFAM protein family HMM PF00441 NP_418899.1 identified by match to PFAM protein family HMM PF00441 NP_418900.1 identified by match to protein family HMM NP_418903.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine NP_418904.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate NP_418905.1 involved in de novo purine biosynthesis NP_418910.1 identified by match to protein family HMM NP_418911.1 identified by match to protein family HMM NP_418912.1 identified by match to protein family HMM NP_418913.1 identified by match to protein family HMM NP_418914.1 identified by match to protein family HMM NP_418915.1 identified by match to protein family HMM NP_418916.1 identified by match to PFAM protein family HMM PF01112 NP_418920.1 identified by match to PFAM protein family HMM PF00834 NP_418921.1 identified by match to TIGR protein family HMM TIGR00563 NP_418923.1 identified by match to TIGR protein family HMM TIGR00066 NP_418924.1 OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase NP_418926.1 identified by match to PFAM protein family HMM PF01360 NP_418928.1 identified by match to PFAM protein family HMM PF02190 NP_418929.1 identified by match to protein family HMM NP_418930.1 similar to GP:6899999; identified by sequence similarity NP_418936.1 identified by match to protein family HMM NP_418937.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6Pusing glutamine as a nitrogen source NP_418938.1 identified by match to protein family HMM NP_418943.1 identified by match to protein family HMM NP_418945.1 identified by match to protein family HMM NP_418946.1 identified by match to PFAM protein family HMM PF01124 NP_418948.1 catalyzes ATP + L-citrulline + L-aspartate = AMP + diphosphate + (N(omega)-L-arginino)succinate NP_418950.1 identified by match to protein family HMM NP_418952.1 identified by match to protein family HMM NP_418956.1 identified by match to protein family HMM NP_418957.1 identified by match to protein family HMM NP_418958.1 identified by match to protein family HMM NP_418959.1 identified by match to PFAM protein family HMM PF01078 NP_418960.1 The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione NP_418963.1 identified by match to PFAM protein family HMM PF00590 NP_418964.1 identified by match to TIGR protein family HMM TIGR00539 NP_418965.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine NP_418966.1 identified by match to protein family HMM NP_418969.1 identified by match to protein family HMM NP_418970.1 identified by match to protein family HMM NP_418971.1 identified by match to PFAM protein family HMM PF01138 NP_418972.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons NP_418973.1 identified by match to PFAM protein family HMM PF01025 NP_418975.1 binds the polymerase to DNA and acts as a sliding clamp NP_418976.1 identified by match to protein family HMM NP_418978.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA NP_418979.1 negatively supercoils closed circular double-stranded DNA NP_418985.1 similar to SP:P10498 GB:M93042 GB:X12568 PID:152412 PID:1063595; identified by sequence similarity NP_418990.1 similar to GP:9187833; identified by sequence similarity NP_418992.1 identified by match to PFAM protein family HMM PF00263 NP_418993.1 identified by match to protein family HMM NP_418994.1 identified by match to protein family HMM NP_418995.1 similar to SP:Q00514; identified by sequence similarity NP_418997.1 similar to GB:M80792 SP:Q00516 GB:X62666 PID:151469 PID:45438; identified by sequence similarity NP_418998.1 similar to SP:P31589 PID:42192; identified by sequence similarity NP_418999.1 similar to SP:P31760 PID:38832; identified by sequence similarity NP_419000.1 similar to GB:X66504 SP:P45789 PID:414849; identified by sequence similarity NP_419003.1 identified by match to PFAM protein family HMM PF01478 NP_419004.1 identified by match to protein family HMM NP_419005.1 identified by match to protein family HMM NP_419006.1 similar to GP:3764057; identified by sequence similarity NP_419007.1 identified by match to protein family HMM NP_419009.1 identified by match to PFAM protein family HMM PF01662 NP_419010.1 identified by match to protein family HMM NP_419011.1 identified by match to protein family HMM NP_419012.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis NP_419014.1 identified by match to TIGR protein family HMM TIGR00171 NP_419015.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate NP_419016.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site NP_419017.1 identified by match to TIGR protein family HMM TIGR00088 NP_419019.1 identified by match to protein family HMM NP_419020.1 identified by match to protein family HMM NP_419023.1 identified by match to PFAM protein family HMM PF02080 NP_419024.1 similar to GP:5019382; identified by sequence similarity NP_419025.1 identified by match to PFAM protein family HMM PF01144 NP_419026.1 identified by match to PFAM protein family HMM PF01144 NP_419027.1 identified by match to protein family HMM NP_419029.1 identified by match to protein family HMM NP_419031.1 identified by match to PFAM protein family HMM PF00795 NP_419032.1 identified by match to protein family HMM NP_419033.1 identified by match to protein family HMM NP_419034.1 similar to GP:4009446; identified by sequence similarity NP_419036.1 identified by match to protein family HMM NP_419041.1 identified by match to protein family HMM NP_419042.1 identified by match to protein family HMM NP_419049.1 identified by match to protein family HMM NP_419050.1 identified by match to protein family HMM NP_419052.1 identified by match to protein family HMM NP_419053.1 identified by match to PFAM protein family HMM PF01041 NP_419056.1 identified by match to protein family HMM NP_419057.1 identified by match to protein family HMM NP_419058.1 similar to GP:4150979; identified by sequence similarity NP_419059.1 identified by match to protein family HMM NP_419060.1 identified by match to protein family HMM NP_419063.1 identified by match to PFAM protein family HMM PF00702 NP_419064.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction NP_419065.1 Converts 2,5-dichloro-2,5-cyclohexadiene-1,4-diol to 2,5-dichlorohydroquinone NP_419066.1 identified by match to protein family HMM NP_419067.1 identified by match to protein family HMM NP_419068.1 similar to SP:P38072 PID:498753 PID:536232; identified by sequence similarity NP_419071.1 identified by match to protein family HMM NP_419072.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde NP_419073.1 identified by match to TIGR protein family HMM TIGR00688 NP_419074.1 similar to GP:3649751; identified by sequence similarity NP_419075.1 identified by match to protein family HMM NP_419076.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine NP_419078.1 identified by match to protein family HMM NP_419079.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE NP_419080.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis NP_419082.1 identified by match to PFAM protein family HMM PF00375 NP_419083.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile NP_419084.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation NP_419085.1 identified by match to protein family HMM NP_419086.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA NP_419088.1 identified by match to protein family HMM NP_419091.1 identified by match to TIGR protein family HMM TIGR00079 NP_419094.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. NP_419095.1 similar to GP:3746520; identified by sequence similarity NP_419097.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability NP_419098.1 identified by match to TIGR protein family HMM TIGR00460 NP_419100.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway NP_419101.1 identified by match to PFAM protein family HMM PF00702 NP_419102.1 identified by match to protein family HMM NP_419103.1 LovR from Caulobacter crescentus is a response regulator part of a two-component signaling system that regulates photosensitive bacterial cell-surface and cell-cell attachment NP_419104.2 identified by match to protein family HMM NP_419105.1 identified by match to PFAM protein family HMM PF01100 NP_419108.1 identified by match to protein family HMM NP_419109.1 identified by match to protein family HMM NP_419110.1 identified by match to protein family HMM NP_419111.1 identified by match to protein family HMM NP_419112.1 similar to GP:6531666; identified by sequence similarity NP_419113.1 identified by match to protein family HMM NP_419116.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis NP_419119.1 identified by match to protein family HMM NP_419120.1 identified by match to TIGR protein family HMM TIGR00682 NP_419121.1 similar to SP:P23282 GB:M60670 GB:M86305 PID:146543 PID:146556; identified by sequence similarity NP_419122.1 identified by match to PFAM protein family HMM PF01545 NP_419124.1 identified by match to protein family HMM NP_419127.1 identified by match to PFAM protein family HMM PF00459 NP_419128.1 identified by match to PFAM protein family HMM PF01523 NP_419133.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis NP_419134.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication NP_419136.1 identified by match to protein family HMM NP_419137.1 involved in the peptidyltransferase reaction during translation NP_419138.1 identified by match to TIGR protein family HMM TIGR00061 NP_419141.1 similar to GB:M28819 SP:P18784 PID:145869 PID:882534 GB:U00096; identified by sequence similarity NP_419143.1 identified by match to PFAM protein family HMM PF00881 NP_419144.1 identified by match to protein family HMM NP_419146.1 identified by match to protein family HMM NP_419147.1 similar to GB:L34009 SP:P37329 PID:504498 PID:973214 PID:1147817; identified by sequence similarity NP_419148.1 identified by match to protein family HMM NP_419153.1 identified by match to protein family HMM NP_419154.1 identified by match to protein family HMM NP_419155.1 identified by match to protein family HMM NP_419156.1 catalyzes the interconversion of succinyl-CoA and succinate NP_419157.1 identified by match to protein family HMM NP_419158.2 kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth NP_419159.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA NP_419161.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide NP_419162.1 identified by match to protein family HMM NP_419163.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs NP_419165.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity NP_419169.1 identified by match to protein family HMM NP_419172.1 identified by match to PFAM protein family HMM PF00378 NP_419174.1 identified by match to protein family HMM NP_419176.1 identified by match to protein family HMM NP_419177.1 identified by match to PFAM protein family HMM PF01178 NP_419178.1 transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine NP_419179.1 identified by match to protein family HMM NP_419180.1 identified by match to protein family HMM NP_419181.1 similar to SP:P16682 GB:U14003 PID:147197 PID:216592 PID:536949; identified by sequence similarity NP_419182.1 identified by match to protein family HMM NP_419183.1 identified by match to protein family HMM NP_419184.1 identified by match to PFAM protein family HMM PF00430 NP_419185.1 identified by match to PFAM protein family HMM PF00430 NP_419186.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 NP_419187.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 NP_419192.1 identified by match to protein family HMM NP_419196.1 identified by match to protein family HMM NP_419197.1 identified by match to protein family HMM NP_419198.1 identified by match to protein family HMM NP_419199.1 similar to GB:U04836 SP:P45798 PID:450183; identified by sequence similarity NP_419200.1 identified by match to protein family HMM NP_419201.1 identified by match to protein family HMM NP_419203.1 identified by match to protein family HMM NP_419204.1 identified by match to protein family HMM NP_419205.1 identified by match to PFAM protein family HMM PF01075 NP_419207.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides NP_419210.1 catalyzes the conversion of ferulic acid to feruloyl-CoA NP_419212.1 thiamine-pyrophosphate requiring enzyme NP_419214.1 identified by match to protein family HMM NP_419215.1 identified by match to protein family HMM NP_419216.1 identified by match to PFAM protein family HMM PF00378 NP_419217.1 identified by match to protein family HMM NP_419219.1 identified by match to protein family HMM NP_419221.1 identified by match to protein family HMM NP_419222.1 identified by match to protein family HMM NP_419224.1 identified by match to protein family HMM NP_419226.1 identified by match to protein family HMM NP_419227.1 identified by match to protein family HMM NP_419228.1 identified by match to protein family HMM NP_419229.1 identified by match to protein family HMM NP_419235.1 identified by match to protein family HMM NP_419236.1 identified by match to protein family HMM NP_419237.1 identified by match to protein family HMM NP_419238.1 identified by match to protein family HMM NP_419243.1 identified by match to protein family HMM NP_419245.1 identified by match to PFAM protein family HMM PF00324 NP_419246.1 identified by match to PFAM protein family HMM PF00441 NP_419247.1 identified by match to protein family HMM NP_419249.1 identified by match to protein family HMM NP_419250.1 similar to GP:3282790; identified by sequence similarity NP_419251.1 identified by match to protein family HMM NP_419252.1 identified by match to protein family HMM NP_419253.1 identified by match to protein family HMM NP_419254.1 identified by match to protein family HMM NP_419255.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins NP_419256.1 identified by match to protein family HMM NP_419257.1 similar to GP:3387368; identified by sequence similarity NP_419258.1 similar to GB:X80205 PID:534997; identified by sequence similarity NP_419259.1 identified by match to protein family HMM NP_419260.1 identified by match to protein family HMM NP_419261.1 identified by match to protein family HMM NP_419262.1 identified by match to TIGR protein family HMM TIGR00221 NP_419263.1 identified by match to protein family HMM NP_419264.1 identified by match to protein family HMM NP_419265.1 identified by match to protein family HMM NP_419266.1 identified by match to PFAM protein family HMM PF00728 NP_419267.1 identified by match to protein family HMM NP_419268.1 identified by match to protein family HMM NP_419269.1 identified by match to TIGR protein family HMM TIGR00773 NP_419270.1 identified by match to protein family HMM NP_419272.1 identified by match to protein family HMM NP_419273.1 similar to GP:9948370; identified by sequence similarity NP_419274.1 similar to GP:5596813; identified by sequence similarity NP_419275.1 identified by match to protein family HMM NP_419276.1 identified by match to PFAM protein family HMM PF01502 NP_419278.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer NP_419279.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA NP_419283.1 identified by match to TIGR protein family HMM TIGR00418 NP_419284.1 identified by match to protein family HMM NP_419286.1 identified by match to protein family HMM NP_419288.1 identified by match to protein family HMM NP_419290.1 identified by match to protein family HMM NP_419291.1 identified by match to protein family HMM NP_419292.1 identified by match to protein family HMM NP_419293.1 identified by match to PFAM protein family HMM PF02167 NP_419296.1 identified by match to PFAM protein family HMM PF01738 NP_419297.1 identified by match to PFAM protein family HMM PF01738 NP_419298.1 the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 NP_419300.1 similar to GP:1907076; identified by sequence similarity NP_419301.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine NP_419303.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation NP_419304.1 identified by match to TIGR protein family HMM TIGR00731 NP_419306.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP NP_419311.1 identified by match to TIGR protein family HMM TIGR00544 NP_419313.1 identified by match to PFAM protein family HMM PF01089 NP_419314.1 identified by match to protein family HMM NP_419315.1 identified by match to protein family HMM NP_419316.1 identified by match to TIGR protein family HMM TIGR00855 NP_419321.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme NP_419322.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter NP_419323.1 identified by match to protein family HMM NP_419325.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis NP_419329.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation NP_419330.1 identified by match to protein family HMM NP_419333.1 identified by match to PFAM protein family HMM PF01527 NP_419334.1 similar to PID:1103858; identified by sequence similarity NP_419335.1 identified by match to protein family HMM NP_419338.1 identified by match to protein family HMM NP_419340.1 identified by match to protein family HMM NP_419341.1 identified by match to protein family HMM NP_419344.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine NP_419347.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors NP_419349.1 identified by match to protein family HMM NP_419350.1 identified by match to TIGR protein family HMM TIGR00066 NP_419351.1 identified by match to PFAM protein family HMM PF01188 NP_419353.1 identified by match to TIGR protein family HMM TIGR00221 NP_419354.1 identified by match to protein family HMM NP_419355.1 identified by match to protein family HMM NP_419356.1 identified by match to protein family HMM NP_419357.1 identified by match to protein family HMM NP_419359.1 similar to GB:U43572 GB:L78464 SP:P54802 PID:1171229 PID:1171231; identified by sequence similarity NP_419361.1 identified by match to protein family HMM NP_419363.1 identified by match to protein family HMM NP_419371.1 identified by match to protein family HMM NP_419378.1 similar to GP:3091150; identified by sequence similarity NP_419379.1 identified by match to protein family HMM NP_419380.1 identified by match to protein family HMM NP_419381.1 identified by match to protein family HMM NP_419384.1 identified by match to PFAM protein family HMM PF01078 NP_419389.1 identified by match to protein family HMM NP_419391.1 identified by match to protein family HMM NP_419393.1 similar to GP:2739292; identified by sequence similarity NP_419394.1 identified by match to PFAM protein family HMM PF01112 NP_419397.1 similar to GP:9105165; identified by sequence similarity NP_419398.1 identified by match to protein family HMM NP_419399.1 similar to GB:U00096 PID:1788043; identified by sequence similarity NP_419400.1 identified by match to protein family HMM NP_419401.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation NP_419402.1 identified by match to protein family HMM NP_419404.1 identified by match to protein family HMM NP_419405.1 identified by match to protein family HMM NP_419406.1 identified by match to protein family HMM NP_419407.1 identified by match to protein family HMM NP_419409.1 identified by match to protein family HMM NP_419411.1 identified by match to protein family HMM NP_419412.1 identified by match to protein family HMM NP_419413.1 identified by match to protein family HMM NP_419414.1 identified by match to protein family HMM NP_419415.2 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins NP_419416.1 identified by match to protein family HMM NP_419427.1 similar to PID:1652571; identified by sequence similarity NP_419428.1 identified by match to protein family HMM NP_419429.1 identified by match to protein family HMM NP_419430.1 identified by match to protein family HMM NP_419431.1 identified by match to protein family HMM NP_419432.1 identified by match to protein family HMM NP_419433.1 identified by match to protein family HMM NP_419434.1 identified by match to PFAM protein family HMM PF00384 NP_419435.1 identified by match to PFAM protein family HMM PF00590 NP_419437.1 identified by match to protein family HMM NP_419438.1 identified by match to protein family HMM NP_419441.1 identified by match to protein family HMM NP_419442.1 identified by match to protein family HMM NP_419445.1 identified by match to PFAM protein family HMM PF00375 NP_419446.1 identified by match to protein family HMM NP_419447.1 identified by match to protein family HMM NP_419451.1 identified by match to protein family HMM NP_419452.1 identified by match to PFAM protein family HMM PF01061 NP_419454.1 identified by match to protein family HMM NP_419457.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA NP_419458.1 identified by match to protein family HMM NP_419459.1 identified by match to protein family HMM NP_419461.1 identified by match to protein family HMM NP_419464.1 similar to SP:P40685; identified by sequence similarity NP_419465.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response NP_419469.1 identified by match to protein family HMM NP_419471.1 identified by match to protein family HMM NP_419472.1 identified by match to protein family HMM NP_419473.1 identified by match to protein family HMM NP_419474.1 identified by match to protein family HMM NP_419476.1 identified by match to PFAM protein family HMM PF01035 NP_419478.1 identified by match to TIGR protein family HMM TIGR00009 NP_419479.1 similar to GP:3005554; identified by sequence similarity NP_419480.1 identified by match to protein family HMM NP_419482.1 identified by match to protein family HMM NP_419489.1 identified by sequence similarity NP_419492.1 similar to GP:3095084; identified by sequence similarity NP_419500.1 identified by match to protein family HMM NP_419501.1 identified by match to protein family HMM NP_419502.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth NP_419503.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring NP_419506.1 similar to PID:769899; identified by sequence similarity NP_419507.1 identified by match to PFAM protein family HMM PF00441 NP_419511.1 identified by match to protein family HMM NP_419512.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex NP_419517.1 identified by match to TIGR protein family HMM TIGR00077 NP_419518.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme NP_419519.1 identified by match to protein family HMM NP_419520.1 identified by match to TIGR protein family HMM TIGR00083 NP_419521.1 identified by match to protein family HMM NP_419526.1 identified by match to PFAM protein family HMM PF01035 NP_419529.1 identified by match to TIGR protein family HMM TIGR00437 NP_419530.1 identified by match to protein family HMM NP_419531.1 similar to SP:P25747 GB:X62529 PID:405874 GB:U00096 PID:1788475; identified by sequence similarity NP_419532.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA NP_419533.1 identified by match to protein family HMM NP_419534.1 similar to GB:AE000513; identified by sequence similarity NP_419537.1 identified by match to protein family HMM NP_419538.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA NP_419539.1 identified by match to protein family HMM NP_419540.1 identified by match to protein family HMM NP_419543.1 identified by match to PFAM protein family HMM PF00766 NP_419544.1 identified by match to PFAM protein family HMM PF01012 NP_419549.1 identified by match to protein family HMM NP_419550.1 identified by match to protein family HMM NP_419553.1 identified by match to protein family HMM NP_419554.1 identified by match to protein family HMM NP_419555.1 identified by match to protein family HMM NP_419557.1 identified by match to protein family HMM NP_419558.1 identified by match to protein family HMM NP_419560.1 similar to GP:2642341; identified by sequence similarity NP_419561.1 identified by match to protein family HMM NP_419562.1 identified by match to PFAM protein family HMM PF00939 NP_419563.1 identified by match to PFAM protein family HMM PF00353 NP_419564.1 identified by match to protein family HMM NP_419567.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine NP_419568.1 identified by match to protein family HMM NP_419569.1 transcriptional regulator that positively regulated fixLJ operon; upregulated transcription by FixJ; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes NP_419572.1 identified by match to protein family HMM NP_419573.1 identified by match to protein family HMM NP_419575.1 response regulator for histidine kinase FixL; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes NP_419576.1 identified by match to protein family HMM NP_419577.1 identified by match to protein family HMM NP_419578.1 identified by match to protein family HMM NP_419579.1 identified by match to PFAM protein family HMM PF01654 NP_419580.1 identified by match to TIGR protein family HMM TIGR00203 NP_419581.1 identified by match to protein family HMM NP_419583.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential NP_419584.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria NP_419585.1 identified by match to TIGR protein family HMM TIGR00188 NP_419586.1 identified by match to protein family HMM NP_419587.1 identified by match to protein family HMM NP_419588.1 similar to PID:2088525; identified by sequence similarity NP_419589.1 identified by match to protein family HMM NP_419591.1 identified by match to PFAM protein family HMM PF00743 NP_419594.1 similar to PID:893353; identified by sequence similarity NP_419595.1 similar to GP:8037803; identified by sequence similarity NP_419596.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation NP_419599.1 identified by match to protein family HMM NP_419600.1 identified by match to protein family HMM NP_419601.2 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism NP_419604.1 similar to GP:5669511; identified by sequence similarity NP_419606.1 identified by match to PFAM protein family HMM PF01055 NP_419607.1 identified by match to protein family HMM NP_419608.1 stationary phase that binds TrpR repressor NP_419609.1 identified by match to protein family HMM NP_419610.1 identified by match to protein family HMM NP_419611.1 identified by match to protein family HMM NP_419613.1 similar to PID:1519526; identified by sequence similarity NP_419614.1 identified by match to protein family HMM NP_419615.1 similar to GB:U40408 PID:1373055 PID:1628565 PID:1668766; identified by sequence similarity NP_419616.1 identified by match to protein family HMM NP_419618.1 identified by match to protein family HMM NP_419621.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain NP_419622.1 identified by match to protein family HMM NP_419623.1 similar to GB:L23839 PID:404773 PID:833173; identified by sequence similarity NP_419624.1 identified by match to protein family HMM NP_419625.1 identified by match to protein family HMM NP_419626.1 identified by match to protein family HMM NP_419628.1 identified by match to protein family HMM NP_419631.1 identified by match to protein family HMM NP_419632.1 similar to GP:2281664; identified by sequence similarity NP_419633.1 identified by match to protein family HMM NP_419636.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate NP_419637.1 similar to GB:AL009126; identified by sequence similarity NP_419638.1 identified by match to protein family HMM NP_419639.1 identified by match to protein family HMM NP_419645.1 identified by match to PFAM protein family HMM PF00795 NP_419646.1 identified by match to protein family HMM NP_419647.1 identified by match to protein family HMM NP_419650.1 identified by match to protein family HMM NP_419652.1 identified by match to protein family HMM NP_419653.1 identified by match to protein family HMM NP_419655.1 identified by match to protein family HMM NP_419657.1 Involved in ubiquinone biosynthesis NP_419660.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. NP_419665.1 identified by match to protein family HMM NP_419666.1 identified by match to protein family HMM NP_419668.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis NP_419672.1 identified by match to protein family HMM NP_419673.1 identified by match to TIGR protein family HMM TIGR00019 NP_419674.1 identified by match to protein family HMM NP_419676.1 identified by match to protein family HMM NP_419677.1 identified by match to protein family HMM NP_419678.1 similar to GB:L10328 SP:P04984 GB:M13169 PID:147514 PID:290600; identified by sequence similarity NP_419682.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; this condensing enzyme differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs NP_419692.1 identified by match to protein family HMM NP_419695.1 identified by match to protein family HMM NP_419699.1 identified by match to protein family HMM NP_419701.1 identified by match to protein family HMM NP_419702.1 identified by match to protein family HMM NP_419703.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine NP_419704.1 identified by match to PFAM protein family HMM PF00926 NP_419705.1 identified by match to TIGR protein family HMM TIGR00114 NP_419706.1 identified by match to protein family HMM NP_419708.1 identified by match to protein family HMM NP_419711.1 identified by match to protein family HMM NP_419713.1 identified by match to protein family HMM NP_419714.1 identified by match to TIGR protein family HMM TIGR00420 NP_419715.1 identified by match to protein family HMM NP_419716.1 identified by match to protein family HMM NP_419717.1 similar to GP:3493242; identified by sequence similarity NP_419718.1 identified by match to protein family HMM NP_419721.2 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod NP_419722.1 One of three proteins involved in switching the direction of the flagellar rotation NP_419723.1 binds to and inhibits the function of flagella specific ATPase FliI NP_419724.1 One of three proteins involved in switching the direction of the flagellar rotation NP_419725.1 identified by match to protein family HMM NP_419726.1 membrane protein involved in the flagellar export apparatus NP_419731.1 identified by match to protein family HMM NP_419732.1 similar to SP:O68390; identified by sequence similarity NP_419733.1 identified by match to protein family HMM NP_419734.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate NP_419735.1 identified by match to protein family HMM NP_419737.1 identified by match to protein family HMM NP_419738.1 Activates fatty acids by binding to coenzyme A NP_419739.1 identified by match to protein family HMM NP_419741.1 similar to SP:P38370 GB:S64103 PID:402804; identified by sequence similarity NP_419743.1 identified by match to TIGR protein family HMM TIGR00705 NP_419744.1 identified by match to PFAM protein family HMM PF01511 NP_419745.1 similar to GB:X71024 GB:M96454 SP:Q08082 PID:454221; identified by sequence similarity NP_419746.1 identified by match to protein family HMM NP_419748.1 identified by match to protein family HMM NP_419749.1 similar to GB:M65201 GB:X82941 PID:142275 PID:599613 SP:P55324; identified by sequence similarity NP_419750.1 identified by match to protein family HMM NP_419751.1 identified by match to protein family HMM NP_419752.1 identified by match to PFAM protein family HMM PF00326 NP_419755.1 identified by match to protein family HMM NP_419756.1 similar to GB:D10200 PID:216374 PID:512525; identified by sequence similarity NP_419758.1 identified by match to protein family HMM NP_419760.1 activates fatty acids by binding to coenzyme A NP_419761.1 identified by match to PFAM protein family HMM PF00732 NP_419762.1 identified by match to protein family HMM NP_419763.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA NP_419765.1 similar to GB:M65201 GB:X82941 PID:142275 PID:599613 SP:P55324; identified by sequence similarity NP_419766.1 identified by match to protein family HMM NP_419767.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus NP_419768.1 similar to PID:841252; identified by sequence similarity NP_419769.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum NP_419770.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod NP_419771.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagella NP_419773.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism NP_419774.1 similar to GP:2642341; identified by sequence similarity NP_419775.1 catalyzes the degradation of histidine to urocanate and ammmonia NP_419776.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway NP_419777.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glu NP_419778.1 identified by match to protein family HMM NP_419779.1 identified by match to protein family HMM NP_419780.1 identified by match to PFAM protein family HMM PF00394 NP_419781.1 similar to GB:M19930 SP:P12375 PID:151189; identified by sequence similarity NP_419782.1 activates fatty acids by binding to coenzyme A NP_419783.1 identified by match to protein family HMM NP_419784.1 identified by match to protein family HMM NP_419785.1 identified by match to protein family HMM NP_419786.1 similar to GP:9187833; identified by sequence similarity NP_419787.1 identified by match to protein family HMM NP_419788.1 identified by match to protein family HMM NP_419793.1 identified by match to protein family HMM NP_419794.1 similar to GP:5763989; identified by sequence similarity NP_419795.1 identified by match to protein family HMM NP_419796.1 identified by match to protein family HMM NP_419797.1 identified by match to protein family HMM NP_419798.1 similar to GB:X77918 PID:525260; identified by sequence similarity NP_419799.1 identified by match to protein family HMM NP_419800.1 identified by match to TIGR protein family HMM TIGR00066 NP_419802.1 identified by match to protein family HMM NP_419804.1 identified by match to protein family HMM NP_419805.1 similar to GP:4038456; identified by sequence similarity NP_419807.1 identified by match to protein family HMM NP_419808.1 identified by match to protein family HMM NP_419810.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress NP_419814.1 identified by match to protein family HMM NP_419815.1 similar to GP:9187833; identified by sequence similarity NP_419817.1 similar to GP:5731277; identified by sequence similarity NP_419818.1 similar to GP:5669511; identified by sequence similarity NP_419819.1 identified by match to protein family HMM NP_419822.1 identified by match to protein family HMM NP_419823.1 identified by match to PFAM protein family HMM PF00353 NP_419824.1 identified by match to protein family HMM NP_419825.1 identified by match to protein family HMM NP_419826.1 identified by match to protein family HMM NP_419827.1 identified by match to protein family HMM NP_419828.1 identified by match to PFAM protein family HMM PF01041 NP_419829.1 identified by match to protein family HMM NP_419830.1 identified by match to protein family HMM NP_419831.1 similar to GP:6064112; identified by sequence similarity NP_419832.1 similar to GP:6064113; identified by sequence similarity NP_419835.1 identified by match to protein family HMM NP_419839.1 identified by match to protein family HMM NP_419840.1 identified by match to protein family HMM NP_419841.1 identified by match to PFAM protein family HMM PF01804 NP_419849.1 identified by match to protein family HMM NP_419850.1 binds to the ribosome on the universally-conserved alpha-sarcin loop NP_419855.1 identified by match to PFAM protein family HMM PF01625 NP_419859.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily NP_419860.1 identified by match to TIGR protein family HMM TIGR00468 NP_419861.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit NP_419862.1 identified by match to TIGR protein family HMM TIGR00001 NP_419863.1 identified by match to protein family HMM NP_419864.1 identified by match to PFAM protein family HMM PF00326 NP_419865.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits NP_419867.1 identified by match to PFAM protein family HMM PF01075 NP_419868.1 identified by match to protein family HMM NP_419873.1 identified by match to protein family HMM NP_419874.1 identified by match to protein family HMM NP_419876.1 identified by match to protein family HMM NP_419878.1 identified by match to protein family HMM NP_419879.1 identified by match to protein family HMM NP_419886.1 identified by match to TIGR protein family HMM TIGR00503 NP_419887.1 identified by match to protein family HMM NP_419891.1 FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum NP_419892.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus NP_419893.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export NP_419894.1 identified by match to protein family HMM NP_419896.1 identified by match to protein family HMM NP_419899.1 identified by match to protein family HMM NP_419902.1 identified by match to protein family HMM NP_419903.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs NP_419905.1 identified by match to protein family HMM NP_419906.1 identified by match to protein family HMM NP_419907.1 identified by match to PFAM protein family HMM PF01593 NP_419908.1 identified by match to protein family HMM NP_419909.1 similar to GP:9107270; identified by sequence similarity NP_419913.1 similar to GB:J05278 SP:P17551 PID:141913; identified by sequence similarity NP_419915.1 identified by match to protein family HMM NP_419919.1 identified by match to protein family HMM NP_419920.1 identified by match to PFAM protein family HMM PF00375 NP_419921.1 identified by match to protein family HMM NP_419923.1 identified by match to protein family HMM NP_419926.1 identified by match to PFAM protein family HMM PF00441 NP_419927.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA NP_419929.1 similar to GP:9187833; identified by sequence similarity NP_419932.1 identified by match to PFAM protein family HMM PF01817 NP_419933.1 identified by match to protein family HMM NP_419934.1 identified by match to PFAM protein family HMM PF00590 NP_419935.1 identified by match to protein family HMM NP_419937.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite NP_419938.1 identified by match to PFAM protein family HMM PF01804 NP_419940.1 identified by match to protein family HMM NP_419942.1 identified by match to protein family HMM NP_419945.1 identified by match to protein family HMM NP_419946.1 similar to SP:P23485 GB:M63115 PID:145931 PID:537133 GB:U00096; identified by sequence similarity NP_419947.1 similar to GP:9187833; identified by sequence similarity NP_419949.1 identified by match to protein family HMM NP_419950.1 identified by match to protein family HMM NP_419951.1 identified by match to protein family HMM NP_419952.1 identified by match to protein family HMM NP_419953.1 identified by match to protein family HMM NP_419954.1 identified by match to protein family HMM NP_419956.1 identified by match to protein family HMM NP_419957.1 identified by match to protein family HMM NP_419958.1 similar to GP:9949393; identified by sequence similarity NP_419960.1 identified by match to protein family HMM NP_419961.1 similar to GP:9948516; identified by sequence similarity NP_419962.1 identified by match to protein family HMM NP_419963.1 identified by match to protein family HMM NP_419966.1 identified by match to protein family HMM NP_419967.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration NP_419968.1 identified by match to protein family HMM NP_419978.1 identified by match to protein family HMM NP_419979.1 identified by match to PFAM protein family HMM PF00550 NP_419981.1 activates fatty acids by binding to coenzyme A NP_419986.1 identified by match to PFAM protein family HMM PF00857 NP_419987.1 similar to GP:4104759; identified by sequence similarity NP_419988.1 identified by match to protein family HMM NP_419991.1 identified by match to protein family HMM NP_419992.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions NP_419997.1 identified by match to protein family HMM NP_419998.1 identified by match to protein family HMM NP_419999.1 identified by match to protein family HMM NP_420000.1 identified by match to PFAM protein family HMM PF00324 NP_420001.1 identified by match to protein family HMM NP_420003.1 identified by match to protein family HMM NP_420005.1 identified by match to protein family HMM NP_420006.1 identified by match to protein family HMM NP_420007.1 identified by match to PFAM protein family HMM PF01032 NP_420008.1 identified by match to protein family HMM NP_420009.1 identified by match to protein family HMM NP_420010.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis NP_420011.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation NP_420014.1 similar to GP:6002225; identified by sequence similarity NP_420016.1 identified by match to protein family HMM NP_420018.1 identified by match to protein family HMM NP_420019.1 identified by match to protein family HMM NP_420020.1 identified by match to PFAM protein family HMM PF00456 NP_420021.1 identified by match to protein family HMM NP_420024.1 identified by match to protein family HMM NP_420027.1 identified by match to protein family HMM NP_420028.1 identified by match to protein family HMM NP_420030.1 identified by match to protein family HMM NP_420031.1 identified by match to PFAM protein family HMM PF00763 NP_420033.1 identified by match to protein family HMM NP_420035.1 catalyzes the phosphorylation of NAD to NADP NP_420037.1 identified by match to protein family HMM NP_420038.1 similar to SP:Q01578 GB:X67189 PID:48655; identified by sequence similarity NP_420039.1 identified by match to protein family HMM NP_420041.1 identified by match to protein family HMM NP_420043.1 identified by match to protein family HMM NP_420044.1 identified by match to protein family HMM NP_420049.1 identified by match to protein family HMM NP_420052.1 identified by match to TIGR protein family HMM TIGR00186 NP_420053.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu NP_420055.1 identified by match to TIGR protein family HMM TIGR00129 NP_420056.1 identified by match to protein family HMM NP_420060.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex NP_420061.2 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin NP_420062.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA NP_420063.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel NP_420064.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation NP_420065.1 identified by match to protein family HMM NP_420066.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center NP_420067.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation NP_420068.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e NP_420069.1 identified by match to TIGR protein family HMM TIGR00012 NP_420070.1 identified by match to protein family HMM NP_420071.1 identified by match to protein family HMM NP_420072.1 identified by match to protein family HMM NP_420073.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 NP_420074.1 identified by match to protein family HMM NP_420075.1 identified by match to protein family HMM NP_420076.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance NP_420077.1 identified by match to TIGR protein family HMM TIGR00060 NP_420078.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance NP_420079.1 identified by match to protein family HMM NP_420080.1 identified by match to protein family HMM NP_420081.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase NP_420082.1 identified by match to PFAM protein family HMM PF00406 NP_420083.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA NP_420084.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 NP_420085.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme NP_420086.1 is a component of the macrolide binding site in the peptidyl transferase center NP_420089.1 identified by match to protein family HMM NP_420090.1 identified by match to PFAM protein family HMM PF01663 NP_420091.1 identified by match to PFAM protein family HMM PF00732 NP_420093.1 identified by match to protein family HMM NP_420094.1 identified by match to protein family HMM NP_420095.1 identified by match to protein family HMM NP_420096.1 identified by match to protein family HMM NP_420097.1 identified by match to protein family HMM NP_420099.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate NP_420100.1 similar to SP:P21364 GB:X13583 PID:43211 PID:902379 PID:902388; identified by sequence similarity NP_420104.1 identified by match to PFAM protein family HMM PF01511 NP_420105.1 similar to GB:X71024 GB:M96454 SP:Q08082 PID:454221; identified by sequence similarity NP_420106.1 identified by match to protein family HMM NP_420107.1 identified by match to protein family HMM NP_420108.1 identified by match to protein family HMM NP_420109.1 identified by match to protein family HMM NP_420110.1 identified by match to protein family HMM NP_420111.1 identified by match to protein family HMM NP_420112.1 identified by match to protein family HMM NP_420113.1 similar to SP:P42416 PID:709985 GB:AL009126; identified by sequence similarity NP_420114.1 similar to SP:P42413 PID:709982 PID:904208 PID:2280501 GB:AL009126; identified by sequence similarity NP_420115.1 identified by match to protein family HMM NP_420117.1 identified by match to protein family HMM NP_420118.1 identified by match to protein family HMM NP_420119.1 identified by match to TIGR protein family HMM TIGR00742 NP_420122.1 similar to SP:P29935; identified by sequence similarity NP_420123.1 identified by match to PFAM protein family HMM PF00441 NP_420124.1 identified by match to PFAM protein family HMM PF00441 NP_420127.1 identified by match to protein family HMM NP_420128.1 identified by match to PFAM protein family HMM PF00903 NP_420129.1 identified by match to protein family HMM NP_420131.1 similar to SP:P02930 GB:X54049 PID:43101 PID:43107 PID:882565; identified by sequence similarity NP_420132.1 pole-organizing protein that affects FtsZ NP_420133.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain NP_420134.1 identified by match to protein family HMM NP_420136.1 identified by match to PFAM protein family HMM PF01425 NP_420137.1 identified by match to TIGR protein family HMM TIGR00478 NP_420139.1 identified by match to protein family HMM NP_420140.1 identified by match to PFAM protein family HMM PF01209 NP_420141.1 identified by match to protein family HMM NP_420142.1 identified by match to protein family HMM NP_420143.1 identified by match to PFAM protein family HMM PF01444 NP_420145.1 identified by match to protein family HMM NP_420146.1 identified by match to TIGR protein family HMM TIGR00758 NP_420147.1 identified by match to protein family HMM NP_420148.1 identified by match to protein family HMM NP_420149.1 identified by match to protein family HMM NP_420150.1 identified by match to protein family HMM NP_420151.1 identified by match to TIGR protein family HMM TIGR00836 NP_420152.1 identified by match to protein family HMM NP_420154.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA NP_420155.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA NP_420157.1 identified by match to protein family HMM NP_420158.1 identified by match to protein family HMM NP_420159.1 identified by match to protein family HMM NP_420160.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate NP_420161.1 identified by match to PFAM protein family HMM PF00743 NP_420163.1 identified by match to PFAM protein family HMM PF00441 NP_420164.1 identified by match to PFAM protein family HMM PF00300 NP_420165.1 identified by match to PFAM protein family HMM PF00378 NP_420167.1 identified by match to protein family HMM NP_420168.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine NP_420169.1 similar to PID:642657 SP:P55323; identified by sequence similarity NP_420170.1 identified by match to protein family HMM NP_420172.1 identified by match to PFAM protein family HMM PF00885 NP_420173.1 Regulates rRNA biosynthesis by transcriptional antitermination NP_420174.1 identified by match to PFAM protein family HMM PF00586 NP_420176.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient NP_420177.1 identified by match to protein family HMM NP_420181.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY NP_420182.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs NP_420183.1 identified by match to protein family HMM NP_420187.1 similar to GP:3603230; identified by sequence similarity NP_420189.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit NP_420190.1 forms a direct contact with the tRNA during translation NP_420191.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis NP_420193.1 identified by match to protein family HMM NP_420195.1 identified by match to protein family HMM NP_420196.1 identified by match to PFAM protein family HMM PF00742 NP_420197.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese NP_420198.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate NP_420199.1 identified by match to TIGR protein family HMM TIGR00644 NP_420200.1 identified by match to protein family HMM NP_420202.1 similar to SP:Q02375 PID:226; identified by sequence similarity NP_420209.1 identified by match to PFAM protein family HMM PF01070 NP_420210.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive NP_420212.1 identified by match to protein family HMM NP_420214.1 identified by match to TIGR protein family HMM TIGR00780 NP_420215.1 identified by match to TIGR protein family HMM TIGR00781 NP_420216.1 similar to GB:X74410 PID:456313; identified by sequence similarity NP_420217.1 identified by match to TIGR protein family HMM TIGR00782 NP_420218.1 identified by match to protein family HMM NP_420219.1 similar to PID:1200218; identified by sequence similarity NP_420220.1 identified by match to protein family HMM NP_420221.1 identified by match to TIGR protein family HMM TIGR00847 NP_420222.1 similar to SP:P21364 GB:X13583 PID:43211 PID:902379 PID:902388; identified by sequence similarity NP_420223.1 upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism NP_420224.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III NP_420225.1 identified by match to protein family HMM NP_420231.1 identified by match to PFAM protein family HMM PF01263 NP_420233.1 identified by match to protein family HMM NP_420234.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate NP_420235.1 similar to GP:3128391; identified by sequence similarity NP_420237.1 identified by match to PFAM protein family HMM PF01053 NP_420238.1 identified by match to protein family HMM NP_420239.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis NP_420240.1 similar to GB:M98330 SP:P30010 PID:145514 GB:U00096 PID:1742735; identified by sequence similarity NP_420241.1 identified by match to protein family HMM NP_420242.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis NP_420243.1 identified by match to protein family HMM NP_420245.1 identified by match to protein family HMM NP_420250.1 identified by match to protein family HMM NP_420252.1 identified by match to protein family HMM NP_420253.1 identified by match to protein family HMM NP_420254.1 identified by match to protein family HMM NP_420255.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs NP_420259.1 identified by match to protein family HMM NP_420261.1 identified by match to TIGR protein family HMM TIGR00786 NP_420262.1 identified by match to PFAM protein family HMM PF00881 NP_420269.1 identified by match to protein family HMM NP_420270.1 identified by match to protein family HMM NP_420271.1 post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella NP_420272.2 acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum NP_420273.1 identified by match to protein family HMM NP_420274.1 identified by match to protein family HMM NP_420276.1 identified by match to protein family HMM NP_420277.1 similar to SP:P15346; identified by sequence similarity NP_420280.1 identified by match to protein family HMM NP_420282.1 identified by match to protein family HMM NP_420283.1 catalyzes the formation of phosphoenolpyruvate from pyruvate NP_420286.1 identified by match to protein family HMM NP_420291.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content NP_420292.1 identified by match to protein family HMM NP_420293.1 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis NP_420294.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP NP_420298.1 identified by match to PFAM protein family HMM PF01232 NP_420300.1 identified by match to protein family HMM NP_420301.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism NP_420302.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate NP_420303.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis NP_420304.1 identified by match to PFAM protein family HMM PF00311 NP_420306.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate NP_420307.1 identified by match to protein family HMM NP_420310.1 identified by match to protein family HMM NP_420312.1 identified by match to protein family HMM NP_420314.1 identified by match to protein family HMM NP_420315.1 identified by match to PFAM protein family HMM PF00230 NP_420316.1 identified by match to protein family HMM NP_420317.1 similar to PID:1653493; identified by sequence similarity NP_420319.1 identified by match to protein family HMM NP_420320.1 identified by match to protein family HMM NP_420321.1 similar to GB:M14734 SP:P06555 GB:M22352 GB:M22353 PID:143294; identified by sequence similarity NP_420322.1 identified by match to protein family HMM NP_420326.1 identified by match to PFAM protein family HMM PF01449 NP_420327.1 identified by match to protein family HMM NP_420328.1 identified by match to protein family HMM NP_420329.1 identified by match to protein family HMM NP_420332.1 similar to GB:D30759 PID:551631; identified by sequence similarity NP_420333.1 identified by match to TIGR protein family HMM TIGR00076 NP_420334.1 identified by match to PFAM protein family HMM PF00929 NP_420336.1 identified by match to PFAM protein family HMM PF00557 NP_420337.1 identified by match to protein family HMM NP_420339.1 identified by match to protein family HMM NP_420340.1 identified by match to protein family HMM NP_420344.1 identified by match to protein family HMM NP_420345.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate NP_420348.1 identified by match to protein family HMM NP_420349.1 identified by match to protein family HMM NP_420350.1 identified by match to protein family HMM NP_420351.1 identified by match to protein family HMM NP_420352.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis NP_420354.1 similar to SP:P13519 GB:M22055 PID:606191 PID:1128967 GB:U00096; identified by sequence similarity NP_420355.1 identified by match to protein family HMM NP_420357.1 identified by match to protein family HMM NP_420358.1 identified by match to protein family HMM NP_420362.1 identified by match to PFAM protein family HMM PF01288 NP_420363.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits NP_420364.1 identified by match to protein family HMM NP_420365.1 identified by match to protein family HMM NP_420366.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate NP_420368.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) NP_420369.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids NP_420370.1 identified by match to protein family HMM NP_420371.1 identified by match to protein family HMM NP_420373.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome NP_420374.1 identified by match to PFAM protein family HMM PF00797 NP_420375.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA NP_420376.1 similar to SP:P42251 PID:710013 PID:1680684 GB:AL009126; identified by sequence similarity NP_420377.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling NP_420380.1 identified by match to protein family HMM NP_420382.1 identified by match to protein family HMM NP_420383.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate NP_420384.1 identified by match to protein family HMM NP_420386.1 identified by match to TIGR protein family HMM TIGR00347 NP_420387.1 identified by match to protein family HMM NP_420388.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate NP_420389.1 identified by match to protein family HMM NP_420390.1 identified by match to protein family HMM NP_420391.1 negatively supercoils closed circular double-stranded DNA NP_420392.1 identified by match to PFAM protein family HMM PF01467 NP_420393.1 identified by match to protein family HMM NP_420394.1 identified by match to protein family HMM NP_420395.1 identified by match to protein family HMM NP_420398.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step NP_420399.1 identified by match to TIGR protein family HMM TIGR00430 NP_420402.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions NP_420403.1 identified by match to protein family HMM NP_420404.1 identified by match to TIGR protein family HMM TIGR00681 NP_420405.1 identified by match to protein family HMM NP_420406.1 identified by match to protein family HMM NP_420407.1 identified by match to protein family HMM NP_420408.1 identified by match to protein family HMM NP_420409.1 identified by match to protein family HMM NP_420416.1 identified by match to protein family HMM NP_420417.1 similar to SP:P80358; identified by sequence similarity NP_420418.1 identified by match to protein family HMM NP_420419.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation NP_420420.1 identified by match to protein family HMM NP_420422.1 similar to GP:7228154; identified by sequence similarity NP_420423.1 phenylalanine 4-hydroxylase NP_420426.1 identified by match to protein family HMM NP_420428.1 identified by match to PFAM protein family HMM PF01574 NP_420430.1 identified by match to PFAM protein family HMM PF01189 NP_420431.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway NP_420432.1 identified by match to protein family HMM NP_420433.1 similar to GB:D10200 PID:216374 PID:512525; identified by sequence similarity NP_420434.1 identified by match to protein family HMM NP_420437.1 identified by match to protein family HMM NP_420438.1 identified by match to protein family HMM NP_420440.1 identified by match to protein family HMM NP_420442.1 identified by match to protein family HMM NP_420444.1 identified by match to protein family HMM NP_420448.1 identified by match to PFAM protein family HMM PF00732 NP_420449.1 identified by match to protein family HMM NP_420450.1 similar to GB:M14734 SP:P06555 GB:M22352 GB:M22353 PID:143294; identified by sequence similarity NP_420453.1 identified by match to PFAM protein family HMM PF00702 NP_420456.1 identified by match to protein family HMM NP_420459.1 identified by match to protein family HMM NP_420461.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate NP_420463.1 identified by match to protein family HMM NP_420464.1 identified by match to protein family HMM NP_420465.1 identified by match to protein family HMM NP_420466.1 identified by match to protein family HMM NP_420467.1 identified by match to PFAM protein family HMM PF01758 NP_420468.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway NP_420470.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents NP_420471.1 identified by match to TIGR protein family HMM TIGR00492 NP_420474.1 identified by match to protein family HMM NP_420475.1 unwinds double stranded DNA NP_420476.1 identified by match to protein family HMM NP_420477.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk NP_420478.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit NP_420479.1 identified by match to TIGR protein family HMM TIGR00166 NP_420481.1 identified by match to PFAM protein family HMM PF01598 NP_420482.1 identified by match to protein family HMM NP_420483.1 identified by match to PFAM protein family HMM PF00578 NP_420484.1 identified by match to TIGR protein family HMM TIGR00128 NP_420485.1 identified by match to protein family HMM NP_420487.1 identified by match to TIGR protein family HMM TIGR00517 NP_420488.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP NP_420491.1 identified by match to PFAM protein family HMM PF00625 NP_420493.1 similar to GP:2808506; identified by sequence similarity NP_420495.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin NP_420496.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) NP_420497.1 identified by match to protein family HMM NP_420501.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides NP_420502.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB NP_420505.1 identified by match to protein family HMM NP_420507.1 identified by match to protein family HMM NP_420508.1 identified by match to PFAM protein family HMM PF00334 NP_420509.1 identified by match to PFAM protein family HMM PF00597 NP_420510.1 identified by match to TIGR protein family HMM TIGR00639 NP_420511.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis NP_420512.1 identified by match to protein family HMM NP_420513.1 identified by match to protein family HMM NP_420518.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate NP_420519.1 similar to SP:P35887 GB:U01667 PID:403535; identified by sequence similarity NP_420524.1 identified by match to protein family HMM NP_420526.1 identified by match to protein family HMM NP_420528.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer NP_420529.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not NP_420531.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA NP_420532.1 identified by match to protein family HMM NP_420534.1 identified by match to PFAM protein family HMM PF00676 NP_420535.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase NP_420537.1 identified by match to protein family HMM NP_420538.1 identified by match to PFAM protein family HMM PF00255 NP_420539.1 identified by match to protein family HMM NP_420541.1 identified by match to protein family HMM NP_420542.1 identified by match to protein family HMM NP_420543.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group NP_420545.1 identified by match to protein family HMM NP_420546.1 bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations NP_420547.1 identified by match to PFAM protein family HMM PF01207 NP_420548.1 identified by match to protein family HMM NP_420549.1 identified by match to protein family HMM NP_420550.1 identified by match to protein family HMM NP_420551.1 identified by match to protein family HMM NP_420552.1 catalyzes the transamination of D-amino acids and their alpha-keto acids NP_420553.1 Stimulates the elongation of poly(A) tails NP_420554.1 identified by match to protein family HMM NP_420555.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era NP_420556.1 identified by match to protein family HMM NP_420558.1 identified by match to protein family HMM NP_420559.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation NP_420561.1 identified by match to protein family HMM NP_420562.1 identified by match to protein family HMM NP_420563.1 identified by match to protein family HMM NP_420564.1 identified by match to protein family HMM NP_420565.1 identified by match to protein family HMM NP_420567.1 identified by match to protein family HMM NP_420568.1 identified by match to protein family HMM NP_420569.1 identified by match to protein family HMM NP_420572.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates NP_420573.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle NP_420575.1 identified by match to protein family HMM NP_420576.1 identified by match to protein family HMM NP_420577.1 identified by match to PFAM protein family HMM PF02104 NP_420578.1 similar to GB:X78196 PID:461330; identified by sequence similarity NP_420579.1 identified by match to protein family HMM NP_420580.1 identified by match to protein family HMM NP_420581.1 similar to PID:673470 PID:673471; identified by sequence similarity NP_420582.1 identified by match to protein family HMM NP_420584.1 identified by match to protein family HMM NP_420585.1 identified by match to protein family HMM NP_420586.1 identified by match to protein family HMM NP_420587.1 identified by match to protein family HMM NP_420588.1 identified by match to protein family HMM NP_420589.1 identified by match to protein family HMM NP_420593.1 similar to PID:1707646; identified by sequence similarity NP_420594.1 identified by match to protein family HMM NP_420595.1 identified by match to protein family HMM NP_420596.1 identified by match to protein family HMM NP_420599.1 similar to GP:9654902; identified by sequence similarity NP_420600.1 identified by match to protein family HMM NP_420606.1 identified by match to PFAM protein family HMM PF00441 NP_420607.1 identified by match to PFAM protein family HMM PF00743 NP_420609.1 activates fatty acids by binding to coenzyme A NP_420610.1 identified by match to PFAM protein family HMM PF00724 NP_420611.1 identified by match to protein family HMM NP_420612.1 identified by match to protein family HMM NP_420613.1 similar to GB:AL009126; identified by sequence similarity NP_420614.1 identified by match to PFAM protein family HMM PF00441 NP_420615.1 identified by match to PFAM protein family HMM PF00441 NP_420616.1 identified by match to protein family HMM NP_420617.1 similar to GP:9946027; identified by sequence similarity NP_420619.1 identified by match to protein family HMM NP_420620.1 identified by match to protein family HMM NP_420621.1 identified by match to PFAM protein family HMM PF00378 NP_420622.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA NP_420623.1 identified by match to protein family HMM NP_420625.1 identified by match to PFAM protein family HMM PF00743 NP_420626.1 identified by match to protein family HMM NP_420629.1 identified by match to TIGR protein family HMM TIGR00010 NP_420630.1 identified by match to protein family HMM NP_420631.1 identified by match to TIGR protein family HMM TIGR00041 NP_420632.1 identified by match to protein family HMM NP_420636.1 identified by match to PFAM protein family HMM PF00289 NP_420637.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia NP_420638.1 identified by match to protein family HMM NP_420639.1 identified by match to protein family HMM NP_420640.1 similar to PID:1652373; identified by sequence similarity NP_420645.1 identified by match to protein family HMM NP_420647.1 identified by match to protein family HMM NP_420649.1 identified by match to protein family HMM NP_420651.1 identified by match to TIGR protein family HMM TIGR00580 NP_420653.1 identified by match to protein family HMM NP_420654.1 identified by match to protein family HMM NP_420656.1 identified by match to protein family HMM NP_420657.1 identified by match to protein family HMM NP_420658.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA NP_420661.1 identified by match to PFAM protein family HMM PF01075 NP_420662.1 identified by match to protein family HMM NP_420663.1 identified by match to PFAM protein family HMM PF01553 NP_420665.1 identified by match to protein family HMM NP_420667.1 identified by match to protein family HMM NP_420669.1 identified by match to protein family HMM NP_420671.1 with SufCD activates cysteine desulfurase SufS NP_420672.1 identified by match to protein family HMM NP_420673.1 identified by match to PFAM protein family HMM PF02082 NP_420676.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling NP_420677.1 identified by match to TIGR protein family HMM TIGR00234 NP_420678.1 identified by match to PFAM protein family HMM PF00578 NP_420679.1 identified by match to protein family HMM NP_420681.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 NP_420682.1 identified by match to protein family HMM NP_420683.1 identified by match to PFAM protein family HMM PF01520 NP_420684.1 identified by match to protein family HMM NP_420687.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate NP_420689.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis NP_420690.1 identified by match to TIGR protein family HMM TIGR00531 NP_420691.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism NP_420692.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys NP_420694.1 Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis NP_420696.1 similar to GP:3402271; identified by sequence similarity NP_420697.1 identified by match to protein family HMM NP_420698.1 identified by match to protein family HMM NP_420699.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes NP_420700.1 identified by match to TIGR protein family HMM TIGR00419 NP_420701.1 identified by match to protein family HMM NP_420702.1 catalyzes the formation of anthranilate and glutamate from chorismate and glutamine NP_420704.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity NP_420705.1 identified by match to PFAM protein family HMM PF00591 NP_420706.1 identified by match to protein family HMM NP_420707.1 identified by match to PFAM protein family HMM PF01553 NP_420709.1 Represses a number of genes involved in the response to DNA damage NP_420711.1 identified by match to protein family HMM NP_420712.1 identified by match to TIGR protein family HMM TIGR00464 NP_420713.1 identified by match to protein family HMM NP_420714.1 identified by match to protein family HMM NP_420716.1 identified by match to TIGR protein family HMM TIGR00215 NP_420718.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis NP_420719.1 identified by match to protein family HMM NP_420720.1 identified by match to protein family HMM NP_420722.1 identified by match to PFAM protein family HMM PF01103 NP_420723.1 identified by match to TIGR protein family HMM TIGR00054 NP_420724.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate NP_420725.1 identified by match to PFAM protein family HMM PF01148 NP_420726.1 identified by match to TIGR protein family HMM TIGR00055 NP_420727.1 identified by match to TIGR protein family HMM TIGR00496 NP_420728.1 identified by match to protein family HMM NP_420729.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu NP_420730.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit NP_420733.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase NP_420735.1 identified by match to PFAM protein family HMM PF01156 NP_420736.1 identified by match to protein family HMM NP_420738.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) NP_420740.1 identified by match to protein family HMM NP_420741.1 identified by match to PFAM protein family HMM PF02147 NP_420742.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP NP_420743.1 identified by match to protein family HMM NP_420744.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_420745.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_420746.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_420747.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_420748.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_420749.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_420752.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_420753.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_420754.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase NP_420757.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_420759.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_420761.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_420762.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen NP_420763.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_420765.1 identified by match to protein family HMM NP_420766.1 identified by match to protein family HMM NP_420767.1 identified by match to TIGR protein family HMM TIGR00763 NP_420768.1 binds and unfolds substrates as part of the ClpXP protease NP_420769.1 identified by match to protein family HMM NP_420770.1 identified by match to TIGR protein family HMM TIGR00493 NP_420771.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer NP_420772.1 identified by match to protein family HMM NP_420774.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation NP_420775.1 identified by match to protein family HMM NP_420776.1 identified by match to TIGR protein family HMM TIGR00653 NP_420777.1 similar to GP:9946027; identified by sequence similarity NP_420781.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling NP_420782.1 identified by match to protein family HMM NP_420787.1 identified by match to protein family HMM NP_420788.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling NP_420790.1 identified by match to TIGR protein family HMM TIGR00634 NP_420791.1 identified by match to protein family HMM NP_420792.2 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis NP_420793.1 identified by match to protein family HMM NP_420797.1 similar to SP:P19674 GB:X56175 PID:581231 GB:U00096 PID:1773093; identified by sequence similarity NP_420798.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane NP_420799.1 identified by match to TIGR protein family HMM TIGR00739 NP_420801.1 identified by match to protein family HMM NP_420802.1 identified by match to protein family HMM NP_420803.1 identified by match to protein family HMM NP_420804.1 identified by match to TIGR protein family HMM TIGR00080 NP_420805.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate NP_420806.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_420808.1 identified by match to PFAM protein family HMM PF00902 NP_420813.1 identified by match to protein family HMM NP_420815.1 identified by match to protein family HMM NP_420816.1 identified by match to protein family HMM NP_420818.1 identified by match to TIGR protein family HMM TIGR00195 NP_420820.1 identified by match to protein family HMM NP_420822.1 identified by match to protein family HMM NP_420823.1 identified by match to protein family HMM NP_420825.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space NP_420827.1 identified by match to PFAM protein family HMM PF01554 NP_420836.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine NP_420838.1 identified by match to protein family HMM NP_420839.1 catalyzes the formation of pyruvate from D-cysteine NP_420840.1 identified by match to TIGR protein family HMM TIGR00035 NP_420847.1 identified by match to protein family HMM NP_420849.1 identified by match to protein family HMM NP_420854.1 identified by match to PFAM protein family HMM PF00441 NP_420855.1 identified by match to PFAM protein family HMM PF00441 NP_420856.1 identified by match to protein family HMM NP_420857.1 identified by match to protein family HMM NP_420858.1 identified by match to protein family HMM NP_420859.1 identified by match to TIGR protein family HMM TIGR00749 NP_420860.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate NP_420861.1 identified by match to PFAM protein family HMM PF01182 NP_420862.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate NP_420866.1 identified by match to protein family HMM NP_420867.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella NP_420868.1 similar to GB:M21853 SP:P12634 GB:S52478 PID:144227; identified by sequence similarity NP_420869.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod NP_420871.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate NP_420872.1 identified by match to PFAM protein family HMM PF00348 NP_420873.1 similar to GB:D00694 SP:P22938 PID:216583 GB:U00096 PID:1773106; identified by sequence similarity NP_420875.1 identified by match to PFAM protein family HMM PF00850 NP_420876.1 identified by match to protein family HMM NP_420879.1 identified by match to protein family HMM NP_420880.1 identified by match to protein family HMM NP_420883.1 identified by match to protein family HMM NP_420885.1 identified by match to protein family HMM NP_420888.1 identified by match to protein family HMM NP_420891.1 identified by match to protein family HMM NP_420892.1 identified by match to protein family HMM NP_420894.1 identified by match to protein family HMM NP_420895.1 identified by match to protein family HMM NP_420896.1 identified by match to protein family HMM NP_420897.1 similar to GB:M60607 SP:P10384 GB:Y00552 PID:145910 PID:41372; identified by sequence similarity NP_420898.1 identified by match to protein family HMM NP_420899.1 identified by match to PFAM protein family HMM PF00702 NP_420900.1 identified by match to TIGR protein family HMM TIGR00338 NP_420901.1 identified by match to TIGR protein family HMM TIGR00174 NP_420903.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive NP_420904.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit NP_420912.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle NP_420913.1 identified by match to protein family HMM NP_420916.1 identified by match to PFAM protein family HMM PF00348 NP_420923.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis NP_420927.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived NP_420928.1 identified by match to protein family HMM NP_420929.1 identified by match to protein family HMM NP_420931.1 similar to SP:Q01578 GB:X67189 PID:48655; identified by sequence similarity NP_420932.1 identified by match to PFAM protein family HMM PF00724 NP_420934.1 identified by match to PFAM protein family HMM PF00441 NP_420937.1 identified by match to protein family HMM NP_420939.1 identified by match to protein family HMM NP_420940.1 similar to SP:P13009; identified by sequence similarity NP_420941.1 similar to SP:P37586 GB:X52093; identified by sequence similarity NP_420942.1 identified by match to protein family HMM NP_420943.1 identified by match to TIGR protein family HMM TIGR00676 NP_420944.1 identified by match to protein family HMM NP_420946.1 identified by match to protein family HMM NP_420950.1 identified by match to PFAM protein family HMM PF00389 NP_420951.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence NP_420952.1 identified by match to protein family HMM NP_420953.1 identified by match to protein family HMM NP_420955.1 identified by match to protein family HMM NP_420956.1 identified by match to PFAM protein family HMM PF01522 NP_420957.1 identified by match to PFAM protein family HMM PF00930 NP_420964.1 identified by match to PFAM protein family HMM PF00768 NP_420965.1 identified by match to protein family HMM NP_420967.1 identified by match to protein family HMM NP_420969.1 identified by match to TIGR protein family HMM TIGR00018 NP_420971.1 identified by match to PFAM protein family HMM PF00289 NP_420972.1 identified by match to PFAM protein family HMM PF00378 NP_420973.1 identified by match to protein family HMM NP_420975.1 identified by match to PFAM protein family HMM PF00441 NP_420976.1 identified by match to protein family HMM NP_420977.1 identified by match to TIGR protein family HMM TIGR00400 NP_420978.1 identified by match to PFAM protein family HMM PF01052 NP_420979.1 lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism NP_420982.1 identified by match to PFAM protein family HMM PF00289 NP_420984.1 similar to SP:P45504 PID:1141715 PID:882506 GB:U00096 PID:1789349; identified by sequence similarity NP_420985.1 identified by match to protein family HMM NP_420986.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress NP_420991.1 identified by match to protein family HMM NP_420997.1 identified by match to protein family HMM NP_420998.1 identified by match to PFAM protein family HMM PF00597 NP_421000.1 similar to GP:3806019; identified by sequence similarity NP_421001.1 identified by match to PFAM protein family HMM PF01433 NP_421003.1 identified by match to PFAM protein family HMM PF01844 NP_421004.1 identified by match to protein family HMM NP_421005.1 activates RNA polymerase to cleave back-tracked RNA during elongational pausing NP_421007.1 identified by match to protein family HMM NP_421008.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu NP_421012.1 identified by match to protein family HMM NP_421013.1 identified by match to protein family HMM NP_421014.1 catalyzes the formation of arginine from (N-L-arginino)succinate NP_421016.1 identified by match to protein family HMM NP_421017.1 identified by match to protein family HMM NP_421019.1 identified by match to protein family HMM NP_421022.1 identified by match to PFAM protein family HMM PF01553 NP_421023.1 similar to GB:L28709 SP:P39163 PID:495778 GB:U00096 PID:1651606; identified by sequence similarity NP_421025.1 identified by match to PFAM protein family HMM PF01817 NP_421026.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis NP_421027.1 dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate NP_421029.1 identified by match to protein family HMM NP_421030.1 identified by match to PFAM protein family HMM PF00759 NP_421033.1 identified by match to protein family HMM NP_421035.1 identified by match to protein family HMM NP_421040.1 Catalyzes the deamination of dCTP to form dUTP NP_421041.1 identified by match to PFAM protein family HMM PF01053 NP_421042.1 protein associated with Co2+ and Mg2+ efflux NP_421044.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers NP_421045.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation NP_421046.1 identified by match to protein family HMM NP_421047.1 identified by match to PFAM protein family HMM PF01061 NP_421049.1 identified by match to TIGR protein family HMM TIGR00237 NP_421051.1 identified by match to protein family HMM NP_421052.1 identified by match to protein family HMM NP_421054.1 identified by match to protein family HMM NP_421055.1 identified by match to PFAM protein family HMM PF00459 NP_421056.1 identified by match to protein family HMM NP_421061.1 identified by match to protein family HMM NP_421062.1 identified by match to protein family HMM NP_421063.1 identified by match to protein family HMM NP_421064.1 identified by match to PFAM protein family HMM PF00300 NP_421066.1 identified by match to protein family HMM NP_421067.1 identified by match to protein family HMM NP_421068.1 identified by match to protein family HMM NP_421069.1 identified by match to PFAM protein family HMM PF01048 NP_421071.1 identified by match to protein family HMM NP_421072.1 identified by match to protein family HMM NP_421073.1 identified by match to protein family HMM NP_421075.1 identified by match to protein family HMM NP_421076.1 identified by match to PFAM protein family HMM PF01427 NP_421077.1 identified by match to protein family HMM NP_421078.1 identified by match to protein family HMM NP_421080.1 identified by match to protein family HMM NP_421084.1 identified by match to protein family HMM NP_421085.1 similar to SP:P29761 PID:216417; identified by sequence similarity NP_421086.1 identified by match to protein family HMM NP_421087.1 identified by match to protein family HMM NP_421088.1 identified by match to protein family HMM NP_421089.1 identified by match to protein family HMM NP_421090.1 similar to GP:9187833; identified by sequence similarity NP_421091.1 similar to GP:5669518; identified by sequence similarity NP_421093.1 similar to PID:1103858; identified by sequence similarity NP_421094.1 identified by match to PFAM protein family HMM PF01527 NP_421097.1 similar to PID:1143071 PID:1184104; identified by sequence similarity NP_421098.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) NP_421100.1 identified by match to protein family HMM NP_421101.1 identified by match to protein family HMM NP_421102.1 activates fatty acids by binding to coenzyme A NP_421103.1 identified by match to PFAM protein family HMM PF01474 NP_421105.1 identified by match to protein family HMM NP_421106.1 identified by match to TIGR protein family HMM TIGR00021 NP_421107.1 identified by match to protein family HMM NP_421108.1 catalyzes the formation of glycolate and phosphate from 2-phosphoglycolate NP_421109.1 identified by match to protein family HMM NP_421112.1 identified by match to protein family HMM NP_421114.1 identified by match to protein family HMM NP_421115.1 similar to GB:AE000513; identified by sequence similarity NP_421117.1 identified by match to protein family HMM NP_421118.1 identified by match to protein family HMM NP_421119.1 identified by match to protein family HMM NP_421120.1 identified by match to protein family HMM NP_421121.1 identified by match to protein family HMM NP_421122.1 identified by match to protein family HMM NP_421123.1 similar to GP:6969065; identified by sequence similarity NP_421127.1 identified by match to protein family HMM NP_421128.1 similar to GP:2145184; identified by sequence similarity NP_421130.1 similar to SP:O34261; identified by sequence similarity NP_421131.1 identified by match to PFAM protein family HMM PF00441 NP_421132.1 identified by match to PFAM protein family HMM PF01266 NP_421133.1 identified by match to protein family HMM NP_421134.1 identified by match to protein family HMM NP_421136.1 identified by match to TIGR protein family HMM TIGR00758 NP_421138.1 similar to SP:Q05606 GB:X70139 PID:49194; identified by sequence similarity NP_421139.1 identified by match to protein family HMM NP_421140.1 identified by match to protein family HMM NP_421142.1 identified by match to protein family HMM NP_421145.1 identified by match to TIGR protein family HMM TIGR00172 NP_421146.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 NP_421147.1 identified by match to protein family HMM NP_421149.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer NP_421150.1 identified by match to TIGR protein family HMM TIGR00800 NP_421153.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active NP_421155.1 identified by match to protein family HMM NP_421156.1 identified by match to protein family HMM NP_421157.1 identified by match to protein family HMM NP_421158.1 identified by match to protein family HMM NP_421160.1 identified by match to protein family HMM NP_421161.1 identified by match to PFAM protein family HMM PF01738 NP_421162.1 identified by match to PFAM protein family HMM PF01112 NP_421171.1 identified by match to PFAM protein family HMM PF01451 NP_421172.1 identified by match to protein family HMM NP_421176.1 identified by match to protein family HMM NP_421177.1 MDM; functions in conversion of succinate to propionate NP_421181.1 identified by match to protein family HMM NP_421182.1 identified by match to PFAM protein family HMM PF00984 NP_421185.1 identified by match to PFAM protein family HMM PF00984 NP_421186.1 identified by match to protein family HMM NP_421187.1 similar to SP:P10498 GB:X12568 PID:581513; identified by sequence similarity NP_421189.1 similar to GB:M61242 SP:P23874 PID:146354 GB:U00096 PID:1742484; identified by sequence similarity NP_421191.1 similar to SP:P13509; identified by sequence similarity NP_421192.1 identified by match to protein family HMM NP_421193.1 identified by match to protein family HMM NP_421194.1 identified by match to protein family HMM NP_421195.1 identified by match to protein family HMM NP_421196.1 identified by match to protein family HMM NP_421197.1 identified by match to protein family HMM NP_421198.1 identified by match to protein family HMM NP_421199.1 identified by match to protein family HMM NP_421200.1 identified by match to protein family HMM NP_421201.1 identified by match to protein family HMM NP_421202.1 identified by match to protein family HMM NP_421203.1 activates fatty acids by binding to coenzyme A NP_421204.1 catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA NP_421205.1 identified by match to protein family HMM NP_421206.1 identified by match to protein family HMM NP_421207.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate NP_421208.1 identified by match to PFAM protein family HMM PF01144 NP_421209.1 identified by match to PFAM protein family HMM PF01144 NP_421210.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA NP_421211.1 identified by match to PFAM protein family HMM PF00775 NP_421212.1 identified by match to protein family HMM NP_421213.1 identified by match to protein family HMM NP_421214.1 identified by match to protein family HMM NP_421215.1 identified by match to protein family HMM NP_421219.1 identified by match to protein family HMM NP_421221.1 similar to GP:6249463; identified by sequence similarity NP_421222.1 similar to GP:6007531; identified by sequence similarity NP_421224.1 similar to GP:6249470; identified by sequence similarity NP_421225.1 similar to SP:P17800 PID:154792 PID:39162; identified by sequence similarity NP_421226.1 identified by match to protein family HMM NP_421229.1 identified by match to protein family HMM NP_421230.1 identified by match to protein family HMM NP_421231.1 identified by match to PFAM protein family HMM PF01522 NP_421237.1 identified by match to protein family HMM NP_421239.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA NP_421240.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA NP_421241.1 identified by match to protein family HMM NP_421246.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis NP_421247.1 identified by match to PFAM protein family HMM PF00744 NP_421250.1 identified by match to TIGR protein family HMM TIGR00732 NP_421254.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity NP_421256.1 identified by match to PFAM protein family HMM PF00773 NP_421257.1 identified by match to protein family HMM NP_421258.1 identified by match to protein family HMM NP_421259.1 identified by match to protein family HMM NP_421262.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif NP_421264.1 identified by match to protein family HMM NP_421265.1 involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP NP_421266.1 identified by match to protein family HMM NP_421268.1 identified by match to protein family HMM NP_421269.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function NP_421270.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA NP_421271.1 identified by match to protein family HMM NP_421273.1 identified by match to PFAM protein family HMM PF01230 NP_421276.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia NP_421281.1 identified by match to PFAM protein family HMM PF00441 NP_421282.1 identified by match to PFAM protein family HMM PF00441 NP_421284.1 identified by match to PFAM protein family HMM PF01433 NP_421285.1 identified by match to protein family HMM NP_421286.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins NP_421287.1 identified by match to protein family HMM NP_421288.1 identified by match to protein family HMM NP_421289.1 identified by match to protein family HMM NP_421290.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide NP_421294.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase NP_421296.1 identified by match to protein family HMM NP_421297.1 identified by match to protein family HMM NP_421298.1 identified by match to protein family HMM NP_421300.1 identified by match to protein family HMM NP_421303.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis NP_421304.1 identified by match to protein family HMM NP_421305.1 identified by match to protein family HMM NP_421306.1 identified by match to PFAM protein family HMM PF01722 NP_421308.1 identified by match to protein family HMM NP_421312.1 identified by match to PFAM protein family HMM PF01435 NP_421314.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination NP_421318.1 identified by match to PFAM protein family HMM PF00756 NP_421319.1 identified by match to protein family HMM NP_421320.1 identified by match to protein family HMM NP_421323.1 identified by match to protein family HMM NP_421324.1 identified by match to protein family HMM NP_421325.1 Converts isocitrate to alpha ketoglutarate NP_421330.1 identified by match to protein family HMM NP_421332.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_421333.1 identified by match to protein family HMM NP_421334.1 identified by match to protein family HMM NP_421335.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine NP_421336.1 identified by match to protein family HMM NP_421337.1 identified by match to protein family HMM NP_421338.1 identified by match to protein family HMM NP_421341.1 similar to GP:4007687; identified by sequence similarity NP_421343.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function NP_421344.1 similar to SP:O30994; identified by sequence similarity NP_421345.1 identified by match to protein family HMM NP_421346.1 identified by match to protein family HMM NP_421347.1 similar to GP:3386478; identified by sequence similarity NP_421348.1 identified by match to protein family HMM NP_421349.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis NP_421354.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis NP_421355.1 identified by match to protein family HMM NP_421357.1 identified by match to protein family HMM NP_421358.1 identified by match to PFAM protein family HMM PF00654 NP_421359.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation NP_421360.1 identified by match to protein family HMM NP_421361.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate NP_421362.1 identified by match to protein family HMM NP_421366.1 identified by match to protein family HMM NP_421369.1 identified by match to PFAM protein family HMM PF01510 NP_421370.1 identified by match to protein family HMM NP_421371.1 identified by match to PFAM protein family HMM PF00743 NP_421375.1 identified by match to protein family HMM NP_421377.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA NP_421378.1 identified by match to protein family HMM NP_421380.1 identified by match to PFAM protein family HMM PF00675 NP_421381.1 identified by match to protein family HMM NP_421382.1 identified by match to protein family HMM NP_421383.1 regulator of the sigma 54 transcriptional activator FlbD; represses FlbD when the class II flagellar structure is absent and activates FlbD when the structure is present NP_421384.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum NP_421385.1 similar to GB:M91448 SP:P33980 PID:144242; identified by sequence similarity NP_421386.1 similar to GB:M91448 SP:P33977 PID:551765; identified by sequence similarity NP_421389.1 identified by match to protein family HMM NP_421392.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate NP_421393.1 identified by match to protein family HMM NP_421395.1 identified by match to protein family HMM NP_421399.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine NP_421401.1 identified by match to PFAM protein family HMM PF01593 NP_421404.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide NP_421405.1 identified by match to protein family HMM NP_421409.1 identified by match to protein family HMM NP_421411.1 identified by match to PFAM protein family HMM PF00353 NP_421412.1 identified by match to protein family HMM NP_421414.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia NP_421416.1 identified by match to PFAM protein family HMM PF01156 NP_421417.1 Catalyzes the deamination of guanine NP_421418.1 identified by match to protein family HMM NP_421419.1 identified by match to PFAM protein family HMM PF01315 NP_421422.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate NP_421423.1 identified by match to protein family HMM NP_421425.1 identified by match to PFAM protein family HMM PF02082 NP_421426.1 identified by match to protein family HMM NP_421427.1 identified by match to protein family HMM NP_421428.1 similar to GB:M69129 SP:P27342 PID:144257; identified by sequence similarity NP_421429.1 identified by match to protein family HMM NP_421430.1 identified by match to protein family HMM NP_421431.1 identified by match to protein family HMM NP_421433.1 identified by match to protein family HMM NP_421434.1 identified by match to protein family HMM NP_421437.1 identified by match to PFAM protein family HMM PF00675 NP_421440.1 identified by match to protein family HMM NP_421441.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine NP_421442.1 identified by match to protein family HMM NP_421443.1 similar to GB:D10391 SP:P31544 PID:285774 GB:U00096 PID:1651507; identified by sequence similarity NP_421445.1 identified by match to TIGR protein family HMM TIGR00733 NP_421446.1 identified by match to protein family HMM NP_421447.1 identified by match to protein family HMM NP_421449.1 similar to GP:3342798; identified by sequence similarity NP_421450.1 identified by match to protein family HMM NP_421451.1 identified by match to protein family HMM NP_421452.1 identified by match to PFAM protein family HMM PF00881 NP_421453.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis NP_421454.1 identified by match to protein family HMM NP_421455.1 identified by match to protein family HMM NP_421456.1 identified by match to protein family HMM NP_421459.1 identified by match to protein family HMM NP_421460.1 identified by match to protein family HMM NP_421461.1 identified by match to protein family HMM NP_421463.1 identified by match to protein family HMM NP_421467.1 identified by match to protein family HMM NP_421468.1 identified by match to protein family HMM NP_421469.1 identified by match to protein family HMM NP_421471.1 identified by match to protein family HMM NP_421472.1 identified by match to protein family HMM NP_421474.1 identified by match to TIGR protein family HMM TIGR00230 NP_421476.1 identified by match to TIGR protein family HMM TIGR00500 NP_421479.1 identified by match to protein family HMM NP_421483.1 identified by match to PFAM protein family HMM PF00465 NP_421484.1 identified by match to protein family HMM NP_421485.1 identified by match to protein family HMM NP_421486.1 identified by match to PFAM protein family HMM PF01527 NP_421487.1 similar to PID:1103858; identified by sequence similarity NP_421488.1 identified by match to protein family HMM NP_421491.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation NP_421493.1 identified by match to protein family HMM NP_421502.1 identified by match to protein family HMM NP_421503.1 identified by match to protein family HMM NP_421504.1 identified by match to protein family HMM NP_421505.1 similar to SP:P23485 GB:M63115 PID:145931 PID:537133 GB:U00096; identified by sequence similarity NP_421506.1 identified by match to protein family HMM NP_421512.1 identified by match to protein family HMM NP_421518.1 identified by match to protein family HMM NP_421519.1 identified by match to protein family HMM NP_421521.1 identified by match to protein family HMM NP_421523.1 identified by match to protein family HMM NP_421525.1 identified by match to protein family HMM NP_421526.1 identified by match to protein family HMM NP_421533.1 identified by match to protein family HMM NP_421536.1 identified by match to protein family HMM NP_421537.1 identified by match to protein family HMM; IS1111A/IS1328/IS1533 transposase NP_421538.1 identified by match to PFAM protein family HMM PF01527 NP_421539.1 similar to PID:1103858; identified by sequence similarity NP_421542.1 identified by match to PFAM protein family HMM PF01244 NP_421543.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme NP_421544.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ NP_421547.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription NP_421548.1 identified by match to protein family HMM NP_421549.1 similar to GP:7378811; identified by sequence similarity NP_421551.1 identified by match to protein family HMM NP_421553.1 identified by match to protein family HMM NP_421554.1 identified by match to protein family HMM NP_421555.1 similar to SP:P45405 PID:563333 PID:572604; identified by sequence similarity NP_421556.1 identified by match to TIGR protein family HMM TIGR00353 NP_421557.1 similar to SP:P45401 PID:563331 PID:572602; identified by sequence similarity NP_421558.1 similar to PID:1353873; identified by sequence similarity NP_421559.1 identified by match to protein family HMM NP_421561.1 identified by match to protein family HMM NP_421562.1 identified by match to protein family HMM NP_421567.1 identified by match to protein family HMM NP_421568.1 identified by match to protein family HMM NP_421581.1 identified by match to PFAM protein family HMM PF02105 NP_421582.1 similar to SP:P49860 PID:609311; identified by sequence similarity NP_421584.1 similar to GP:6467534; identified by sequence similarity NP_421587.1 identified by match to protein family HMM NP_421588.1 identified by match to protein family HMM NP_421589.1 identified by match to PFAM protein family HMM PF01593 NP_421590.1 identified by match to protein family HMM NP_421591.1 identified by match to PFAM protein family HMM PF00857 NP_421593.1 identified by match to protein family HMM NP_421595.1 identified by match to PFAM protein family HMM PF00254 NP_421598.1 similar to GB:M55537 SP:P45982 PID:144166; identified by sequence similarity NP_421599.1 identified by match to protein family HMM NP_421600.1 similar to GP:9187833; identified by sequence similarity NP_421601.1 similar to GP:5669518; identified by sequence similarity NP_421603.1 identified by match to protein family HMM NP_421604.1 similar to GP:5669511; identified by sequence similarity NP_421605.1 identified by match to protein family HMM NP_421606.1 identified by match to protein family HMM NP_421607.1 similar to PID:1771832 GB:AE000512; identified by sequence similarity NP_421608.1 identified by match to PFAM protein family HMM PF01188 NP_421609.1 identified by match to protein family HMM NP_421612.1 identified by match to protein family HMM NP_421613.1 identified by match to PFAM protein family HMM PF00702 NP_421614.1 identified by match to protein family HMM NP_421615.1 identified by match to protein family HMM NP_421616.1 similar to GP:9107389; identified by sequence similarity NP_421619.1 identified by match to PFAM protein family HMM PF01523 NP_421620.1 identified by match to PFAM protein family HMM PF01523 NP_421622.1 identified by match to PFAM protein family HMM PF01078 NP_421628.1 identified by match to protein family HMM NP_421630.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers NP_421632.1 identified by match to protein family HMM NP_421633.1 identified by match to protein family HMM NP_421638.1 identified by match to protein family HMM NP_421639.1 identified by match to protein family HMM NP_421641.1 identified by match to protein family HMM NP_421643.1 identified by match to protein family HMM NP_421644.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus NP_421648.1 identified by match to protein family HMM NP_421649.1 identified by match to protein family HMM NP_421650.1 similar to PID:903375; identified by sequence similarity NP_421652.1 similar to PID:903376; identified by sequence similarity NP_421653.1 similar to PID:903377; identified by sequence similarity NP_421656.1 similar to GB:L19659 GB:Z19550 SP:Q06430 PID:1315909 PID:296532; identified by sequence similarity NP_421657.1 identified by match to protein family HMM NP_421659.1 identified by match to protein family HMM NP_421660.1 identified by match to protein family HMM NP_421662.1 identified by match to protein family HMM NP_421663.1 identified by match to protein family HMM NP_421664.1 similar to GB:U05248 PID:454081; identified by sequence similarity NP_421667.1 identified by match to protein family HMM NP_421669.1 identified by match to PFAM protein family HMM PF02047 NP_421670.1 identified by match to protein family HMM NP_421672.1 identified by match to protein family HMM NP_421677.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision NP_421679.1 identified by match to protein family HMM NP_421680.1 identified by match to protein family HMM NP_421683.1 identified by match to protein family HMM NP_421685.1 identified by match to protein family HMM NP_421690.1 identified by match to PFAM protein family HMM PF02105 NP_421694.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity NP_421695.1 identified by match to protein family HMM NP_421697.1 identified by match to protein family HMM NP_421702.1 identified by match to TIGR protein family HMM TIGR00560 NP_421703.1 identified by match to protein family HMM NP_421706.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate NP_421707.1 catalyzes the formation of oxaloacetate from L-aspartate NP_421709.1 identified by match to TIGR protein family HMM TIGR00078 NP_421712.1 identified by match to PFAM protein family HMM PF00578 NP_421713.1 identified by match to protein family HMM NP_421717.1 identified by match to protein family HMM NP_421718.1 identified by match to protein family HMM NP_421722.1 identified by match to protein family HMM NP_421723.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids NP_421724.1 identified by match to protein family HMM NP_421725.1 identified by match to protein family HMM NP_421726.1 identified by match to protein family HMM NP_421727.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis NP_421728.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS NP_421729.1 identified by match to protein family HMM NP_421730.1 identified by match to PFAM protein family HMM PF00877 NP_421731.1 identified by match to protein family HMM NP_421732.1 identified by match to protein family HMM NP_421736.1 identified by match to protein family HMM NP_421737.1 identified by match to protein family HMM NP_421738.1 similar to GP:7208426; identified by sequence similarity NP_421739.1 identified by match to PFAM protein family HMM PF00263 NP_421740.1 similar to GP:7208424; identified by sequence similarity NP_421741.1 similar to GP:7208423; identified by sequence similarity NP_421742.1 similar to GP:7208422; identified by sequence similarity NP_421746.1 identified by match to PFAM protein family HMM PF01063 NP_421747.1 identified by match to PFAM protein family HMM PF00425 NP_421751.1 similar to GB:D30759 PID:551631; identified by sequence similarity NP_421753.1 identified by match to protein family HMM NP_421754.1 identified by match to protein family HMM NP_421757.1 identified by match to PFAM protein family HMM PF00795 NP_421760.1 identified by match to protein family HMM NP_421764.1 identified by match to protein family HMM NP_421765.1 identified by match to protein family HMM NP_421767.1 identified by match to protein family HMM NP_421769.1 identified by match to TIGR protein family HMM TIGR00013 NP_421770.1 identified by match to protein family HMM NP_421771.1 identified by match to protein family HMM NP_421773.1 similar to SP:P21158; identified by sequence similarity NP_421775.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion NP_421782.1 identified by match to protein family HMM NP_421787.1 identified by match to protein family HMM NP_421789.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein NP_421791.1 identified by match to protein family HMM NP_421793.1 similar to SP:O53078; identified by sequence similarity NP_421795.1 identified by match to protein family HMM NP_421796.1 identified by match to protein family HMM NP_421799.1 identified by match to protein family HMM NP_421800.1 identified by match to protein family HMM NP_421802.1 identified by match to protein family HMM NP_421803.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis NP_421804.1 identified by match to protein family HMM NP_421805.1 identified by match to PFAM protein family HMM PF01722 NP_421806.1 identified by match to protein family HMM NP_421807.1 identified by match to protein family HMM NP_421809.1 identified by match to protein family HMM NP_421811.1 identified by match to protein family HMM NP_421813.1 identified by match to PFAM protein family HMM PF01569 NP_421815.1 similar to GB:M62869 SP:P29933 PID:151168 PID:1926457; identified by sequence similarity NP_421819.1 identified by match to protein family HMM NP_421822.1 identified by match to protein family HMM NP_421823.1 identified by match to protein family HMM NP_421824.1 identified by match to protein family HMM NP_421825.1 similar to GB:M30223 SP:P15713 GB:M59304 PID:151496 PID:151498; identified by sequence similarity NP_421826.1 identified by match to protein family HMM NP_421827.1 identified by match to protein family HMM NP_421828.1 identified by match to protein family HMM NP_421829.1 identified by match to protein family HMM NP_421834.1 involved in type III protein export during flagellum assembly NP_421835.1 similar to PID:1938380; identified by sequence similarity NP_421836.1 identified by match to protein family HMM NP_421837.1 identified by match to TIGR protein family HMM TIGR00198 NP_421838.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis NP_421839.1 identified by match to protein family HMM NP_421841.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria NP_421842.1 identified by match to protein family HMM NP_421843.1 synthesizes RNA primers at the replication forks NP_421845.1 identified by match to protein family HMM NP_421848.1 identified by match to protein family HMM NP_421852.1 identified by match to protein family HMM NP_421856.1 similar to SP:P41780; identified by sequence similarity NP_421857.1 identified by match to protein family HMM NP_421859.1 identified by match to protein family HMM NP_421860.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate NP_421861.1 identified by match to protein family HMM NP_421862.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins NP_421863.1 identified by match to protein family HMM NP_421864.1 identified by match to protein family HMM NP_421869.1 identified by match to protein family HMM NP_421870.1 identified by match to protein family HMM NP_421874.1 identified by match to protein family HMM NP_421875.1 identified by match to PFAM protein family HMM PF01642 NP_421876.1 identified by match to protein family HMM NP_421877.1 identified by match to PFAM protein family HMM PF00724 NP_421878.1 identified by match to PFAM protein family HMM PF00378 NP_421879.1 identified by match to protein family HMM NP_421881.1 identified by match to PFAM protein family HMM PF00441 NP_421882.1 identified by match to protein family HMM NP_421884.1 identified by match to protein family HMM NP_421885.1 identified by match to protein family HMM NP_421887.1 similar to GP:2865134; identified by sequence similarity NP_421888.1 identified by match to protein family HMM NP_421892.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters NP_421893.1 identified by match to protein family HMM NP_421894.1 identified by match to protein family HMM NP_421896.1 identified by match to protein family HMM NP_421897.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis NP_421899.1 identified by match to protein family HMM NP_421900.1 similar to GP:3299792; identified by sequence similarity NP_421901.1 identified by match to protein family HMM NP_421902.1 identified by match to TIGR protein family HMM TIGR00720 NP_421905.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation NP_421907.1 identified by match to PFAM protein family HMM PF01188 NP_421910.1 identified by match to protein family HMM NP_421912.1 identified by match to protein family HMM NP_421913.1 identified by match to protein family HMM NP_421914.1 identified by match to protein family HMM NP_421915.1 identified by match to PFAM protein family HMM PF02032 NP_421916.1 identified by match to protein family HMM NP_421917.1 identified by match to protein family HMM NP_421919.1 identified by match to protein family HMM NP_421920.1 identified by match to PFAM protein family HMM PF00324 NP_421921.1 identified by match to protein family HMM NP_421922.1 identified by match to protein family HMM NP_421924.1 identified by match to protein family HMM NP_421926.1 identified by match to protein family HMM NP_421928.1 identified by match to protein family HMM NP_421929.1 identified by match to protein family HMM NP_421930.1 identified by match to protein family HMM NP_421931.1 similar to GB:M64519 SP:P23861 PID:147329 GB:U00096 PID:1651550; identified by sequence similarity NP_421932.1 identified by match to protein family HMM NP_421933.1 catalyzes the formation of 5-aminovulinate from (S)-4-amino-5-oxopentanoate NP_421934.1 identified by match to protein family HMM NP_421935.1 identified by match to protein family HMM NP_421936.1 similar to GP:5508817; identified by sequence similarity NP_421937.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate NP_421939.1 identified by match to protein family HMM NP_421940.1 identified by match to protein family HMM NP_421941.1 identified by match to protein family HMM NP_421943.1 identified by match to protein family HMM NP_421948.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis NP_421949.1 identified by match to protein family HMM NP_421952.1 identified by match to PFAM protein family HMM PF01242 NP_421954.1 identified by match to TIGR protein family HMM TIGR00364 NP_421955.1 similar to GP:7672745; identified by sequence similarity NP_421956.1 identified by match to protein family HMM NP_421958.1 identified by match to protein family HMM NP_421961.1 identified by match to protein family HMM NP_421962.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine NP_421963.1 identified by match to protein family HMM NP_421964.1 identified by match to protein family HMM NP_421967.1 identified by match to protein family HMM NP_421969.1 identified by match to protein family HMM NP_421970.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates NP_421971.1 identified by match to protein family HMM NP_421972.1 similar to GP:1907076; identified by sequence similarity NP_421974.1 catalyzes the formation of inosine from adenosine NP_421975.1 identified by match to PFAM protein family HMM PF01544 NP_421979.1 identified by match to protein family HMM NP_421982.1 identified by match to protein family HMM NP_421983.1 identified by match to PFAM protein family HMM PF00725 NP_421985.1 identified by match to protein family HMM NP_421986.1 identified by match to protein family HMM NP_421988.1 similar to GP:9105165; identified by sequence similarity NP_421989.1 similar to PID:1707646; identified by sequence similarity NP_421990.1 identified by match to protein family HMM NP_421991.1 identified by match to protein family HMM NP_421992.1 identified by match to protein family HMM NP_421993.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu NP_421994.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene NP_421995.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit NP_421996.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance NP_421998.1 identified by match to protein family HMM NP_421999.1 Modulates Rho-dependent transcription termination NP_422000.1 identified by match to PFAM protein family HMM PF00584 NP_422002.1 identified by match to protein family HMM NP_422003.1 identified by match to PFAM protein family HMM PF00994 NP_422005.1 identified by match to PFAM protein family HMM PF02193 NP_422008.1 identified by match to PFAM protein family HMM PF00289 NP_422009.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate NP_422010.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate NP_422013.1 identified by match to protein family HMM NP_422015.1 identified by match to protein family HMM NP_422017.1 identified by match to TIGR protein family HMM TIGR00097 NP_422018.1 identified by match to PFAM protein family HMM PF00809 NP_422019.1 identified by match to protein family HMM NP_422020.1 identified by match to PFAM protein family HMM PF01434 NP_422023.1 identified by match to protein family HMM NP_422024.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA NP_422026.1 similar to PID:1103861 SP:P50599; identified by sequence similarity NP_422027.1 identified by match to protein family HMM NP_422030.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA duringbranch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration NP_422031.1 identified by match to PFAM protein family HMM PF01330 NP_422032.1 identified by match to TIGR protein family HMM TIGR00228 NP_422033.1 identified by match to protein family HMM NP_422036.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase NP_422039.1 identified by match to protein family HMM NP_422040.1 identified by match to PFAM protein family HMM PF00326 NP_422042.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate NP_422043.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway NP_422044.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis NP_422047.1 identified by match to protein family HMM NP_422052.1 identified by match to protein family HMM NP_422053.1 similar to GP:3757749; identified by sequence similarity NP_422055.1 identified by match to protein family HMM NP_422056.1 identified by match to TIGR protein family HMM TIGR00754 NP_422058.1 identified by match to protein family HMM NP_422060.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription NP_422063.1 identified by match to PFAM protein family HMM PF00459 NP_422064.1 identified by match to protein family HMM NP_422066.1 similar to SP:P09394 GB:X56907 GB:Y00536 PID:41581 PID:902489; identified by sequence similarity NP_422068.1 identified by match to protein family HMM NP_422069.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome NP_422071.1 identified by match to protein family HMM NP_422072.1 identified by match to TIGR protein family HMM TIGR00035 NP_422073.1 similar to GP:4467370; identified by sequence similarity NP_422074.1 identified by match to protein family HMM NP_422076.1 identified by match to protein family HMM NP_422077.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway NP_422078.1 identified by match to PFAM protein family HMM PF00731 NP_422079.1 identified by match to protein family HMM NP_422080.1 identified by match to protein family HMM NP_422084.1 identified by match to protein family HMM NP_422087.1 identified by match to protein family HMM NP_422091.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA NP_422093.1 identified by match to protein family HMM NP_422095.1 identified by match to protein family HMM NP_422097.1 similar to SP:P07002 GB:X66086 PID:42457 GB:U00096 PID:1742636; identified by sequence similarity NP_422098.1 similar to GB:U01158 GB:U05294 PID:436914 PID:452573; identified by sequence similarity NP_422099.1 identified by match to PFAM protein family HMM PF01262 NP_422101.1 identified by match to PFAM protein family HMM PF01075 NP_422102.1 identified by match to protein family HMM NP_422104.1 identified by match to protein family HMM NP_422107.1 identified by match to protein family HMM NP_422109.1 identified by match to protein family HMM NP_422114.1 identified by match to PFAM protein family HMM PF00702 NP_422115.1 identified by match to protein family HMM NP_422116.1 identified by match to protein family HMM NP_422119.1 identified by match to protein family HMM NP_422120.1 identified by match to protein family HMM NP_422121.1 identified by match to protein family HMM NP_422126.1 similar to GB:X71024 GB:M96454 SP:Q08082 PID:454221; identified by sequence similarity NP_422127.1 identified by match to PFAM protein family HMM PF01511 NP_422130.1 identified by match to protein family HMM NP_422131.1 identified by match to protein family HMM NP_422132.1 identified by match to protein family HMM NP_422137.1 identified by match to protein family HMM NP_422139.1 identified by match to protein family HMM NP_422143.1 identified by match to protein family HMM NP_422146.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein NP_422147.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein NP_422148.1 identified by match to TIGR protein family HMM TIGR00527 NP_422149.1 identified by match to TIGR protein family HMM TIGR00528 NP_422152.1 identified by match to protein family HMM NP_422153.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase NP_422155.1 identified by match to TIGR protein family HMM TIGR00216 NP_422157.1 similar to SP:Q06259 PID:463277; identified by sequence similarity NP_422158.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine NP_422159.1 identified by match to protein family HMM NP_422161.1 upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism NP_422165.1 identified by match to protein family HMM NP_422166.1 identified by match to protein family HMM NP_422167.1 identified by match to protein family HMM NP_422169.1 identified by match to protein family HMM NP_422174.1 identified by match to protein family HMM NP_422176.1 identified by match to protein family HMM NP_422178.1 identified by match to protein family HMM NP_422183.1 identified by match to protein family HMM NP_422184.1 identified by match to PFAM protein family HMM PF01300 NP_422187.1 identified by match to PFAM protein family HMM PF00441 NP_422188.1 identified by match to PFAM protein family HMM PF00578 NP_422190.1 identified by match to protein family HMM NP_422191.1 identified by match to protein family HMM NP_422192.1 identified by match to PFAM protein family HMM PF00675 NP_422193.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine NP_422194.1 identified by match to protein family HMM NP_422196.1 identified by match to protein family HMM NP_422197.1 involved in the insertion of copper into subunit I of cytochrome C oxidase NP_422199.1 converts protoheme IX and farnesyl diphosphate to heme O NP_422200.1 identified by match to protein family HMM NP_422201.1 identified by match to protein family HMM NP_422205.1 identified by match to PFAM protein family HMM PF01523 NP_422206.1 identified by match to protein family HMM NP_422207.1 identified by match to protein family HMM NP_422208.1 similar to GP:3688156; identified by sequence similarity NP_422214.1 identified by match to protein family HMM NP_422215.1 identified by match to PFAM protein family HMM PF01040 NP_422222.1 identified by match to protein family HMM NP_422224.1 identified by match to TIGR protein family HMM TIGR00407 NP_422225.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria NP_422226.1 identified by match to protein family HMM NP_422228.1 identified by match to protein family HMM NP_422229.1 identified by match to protein family HMM NP_422230.1 identified by match to protein family HMM NP_422234.1 Hydrolyzes diadenosine polyphosphate NP_422235.1 identified by match to protein family HMM NP_422236.1 identified by match to protein family HMM NP_422237.1 identified by match to PFAM protein family HMM PF00893 NP_422239.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex NP_422241.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit NP_422242.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit NP_422243.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit NP_422244.1 identified by match to protein family HMM NP_422248.1 identified by match to PFAM protein family HMM PF00441 NP_422255.1 identified by match to protein family HMM NP_422256.1 identified by match to protein family HMM NP_422258.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair NP_422259.1 identified by match to protein family HMM NP_422262.1 identified by match to protein family HMM NP_422263.1 identified by match to PFAM protein family HMM PF00459 NP_422265.1 identified by match to protein family HMM NP_422266.1 identified by match to protein family HMM NP_422268.1 identified by match to protein family HMM NP_422269.1 identified by match to protein family HMM NP_422271.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media NP_422272.1 similar to GB:U14003 SP:P39281 GB:U21726 PID:536993 PID:717134; identified by sequence similarity NP_422274.1 Modulates the activities of several enzymes which are inactive in their acetylated form NP_422278.1 identified by match to protein family HMM NP_422279.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde NP_422283.1 similar to SP:P46127 GB:U00096 PID:1657571 PID:1786574; identified by sequence similarity NP_422286.1 Catalyzes the rate-limiting step in dNTP synthesis NP_422288.1 identified by match to protein family HMM NP_422289.1 identified by match to PFAM protein family HMM PF01209 NP_422290.1 identified by match to PFAM protein family HMM PF02080 NP_422292.1 identified by match to protein family HMM NP_422294.1 identified by match to protein family HMM NP_422297.1 similar to SP:P23833 PID:536256 PID:666104; identified by sequence similarity NP_422298.1 identified by match to PFAM protein family HMM PF01431 NP_422300.1 identified by match to protein family HMM NP_422301.1 similar to GB:M14734 SP:P06555 GB:M22352 GB:M22353 PID:143294; identified by sequence similarity NP_422304.1 identified by match to protein family HMM NP_422305.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors NP_422306.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine NP_422307.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG NP_422315.1 identified by match to TIGR protein family HMM TIGR00433 NP_422318.1 identified by match to protein family HMM NP_422319.1 identified by match to protein family HMM NP_422320.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase NP_422321.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol NP_422322.1 similar to GP:3273340; identified by sequence similarity NP_422323.1 identified by match to PFAM protein family HMM PF01127 NP_422327.1 identified by match to PFAM protein family HMM PF01553 NP_422330.1 identified by match to protein family HMM NP_422332.1 identified by match to protein family HMM NP_422333.1 identified by match to protein family HMM NP_422335.1 identified by match to protein family HMM NP_422336.1 identified by match to TIGR protein family HMM TIGR00515 NP_422337.1 converts serine and 1-(indol-3-yl)glycerol 3-phosphate to tryptophan and glyceraldehyde 3-phosphate; functions in trytophan synthesis from chorismate; forms a tetramer of alpha(2)beta(2) NP_422338.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate NP_422339.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis NP_422340.1 similar to GB:M19129 SP:P12288 PID:144285; identified by sequence similarity NP_422343.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate NP_422344.1 identified by match to TIGR protein family HMM TIGR00036 NP_422351.1 identified by match to protein family HMM NP_422354.1 identified by match to protein family HMM NP_422355.1 identified by match to protein family HMM NP_422360.1 identified by match to protein family HMM NP_422361.1 identified by match to PFAM protein family HMM PF01557 NP_422362.1 identified by match to protein family HMM NP_422363.1 identified by match to protein family HMM NP_422364.1 identified by match to protein family HMM NP_422366.1 identified by match to protein family HMM NP_422367.1 identified by match to protein family HMM NP_422368.1 identified by match to TIGR protein family HMM TIGR00518 NP_422373.1 similar to GB:M90471 SP:P28614 PID:141888; identified by sequence similarity NP_422374.1 identified by match to protein family HMM NP_422375.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA NP_422378.1 identified by match to PFAM protein family HMM PF00675 NP_422379.1 identified by match to TIGR protein family HMM TIGR00220 NP_422380.1 identified by match to protein family HMM NP_422381.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins NP_422382.1 identified by match to TIGR protein family HMM TIGR00017 NP_422383.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis NP_422386.1 identified by match to protein family HMM NP_422388.1 similar to GB:X71024 GB:M96454 SP:Q08082 PID:454221; identified by sequence similarity NP_422389.1 identified by match to PFAM protein family HMM PF01511 NP_422390.1 identified by match to protein family HMM NP_422391.1 identified by match to protein family HMM NP_422393.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen NP_422394.1 identified by match to protein family HMM NP_422397.1 identified by match to protein family HMM NP_422398.1 identified by match to protein family HMM NP_422399.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell NP_422400.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain NP_422401.1 identified by match to PFAM protein family HMM PF01645 NP_422404.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA NP_422405.1 identified by match to PFAM protein family HMM PF01041 NP_422408.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity NP_422409.1 identified by match to protein family HMM NP_422411.1 similar to GB:M96584 SP:P29954 PID:152407; identified by sequence similarity NP_422412.1 identified by match to protein family HMM NP_422413.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers NP_422414.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase NP_422417.1 identified by match to protein family HMM NP_422418.1 identified by match to protein family HMM NP_422419.1 identified by match to protein family HMM NP_422420.1 identified by match to protein family HMM NP_422423.1 identified by match to protein family HMM NP_422424.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine NP_422425.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine NP_422426.1 identified by match to protein family HMM NP_422427.1 identified by match to PFAM protein family HMM PF00908 NP_422429.1 catalyzes the formation of 2-oxobutanoate from L-threonine NP_422430.1 identified by match to PFAM protein family HMM PF00254 NP_422431.1 identified by match to protein family HMM NP_422432.1 identified by match to TIGR protein family HMM TIGR00276 NP_422433.1 identified by match to protein family HMM NP_422434.1 identified by match to PFAM protein family HMM PF01467 NP_422435.1 identified by match to PFAM protein family HMM PF01545 NP_422436.1 forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle NP_422437.1 identified by match to protein family HMM NP_422442.1 identified by match to PFAM protein family HMM PF00850 NP_422443.1 identified by match to protein family HMM NP_422444.1 identified by match to protein family HMM NP_422445.1 identified by match to PFAM protein family HMM PF01782 NP_422446.1 identified by match to TIGR protein family HMM TIGR00002 NP_422447.1 identified by match to PFAM protein family HMM PF00448 NP_422449.1 Catalyzes the reversible oxidation of malate to oxaloacetate NP_422450.1 identified by match to protein family HMM NP_422453.1 similar to SP:O53078; identified by sequence similarity NP_422456.1 identified by match to protein family HMM NP_422461.2 Catalyzes the conversion of citrate to isocitrate NP_422462.1 identified by match to protein family HMM NP_422463.1 similar to PID:2228687; identified by sequence similarity NP_422464.1 identified by match to protein family HMM NP_422466.1 identified by match to PFAM protein family HMM PF01578 NP_422468.1 identified by match to protein family HMM NP_422471.1 identified by match to protein family HMM NP_422472.1 identified by match to protein family HMM NP_422473.1 identified by match to TIGR protein family HMM TIGR00064 NP_422474.1 similar to GP:7230355; identified by sequence similarity NP_422476.1 similar to SP:P96554; identified by sequence similarity NP_422479.1 identified by match to protein family HMM NP_422480.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate NP_422481.1 identified by match to PFAM protein family HMM PF00326 NP_422482.1 identified by match to PFAM protein family HMM PF00326 NP_422488.1 similar to GP:4336800; identified by sequence similarity NP_422489.1 identified by match to protein family HMM NP_422490.1 identified by match to protein family HMM NP_422491.1 identified by match to protein family HMM NP_422492.1 identified by match to protein family HMM NP_422496.1 identified by match to protein family HMM NP_422497.1 identified by match to PFAM protein family HMM PF01177 NP_422498.1 identified by match to PFAM protein family HMM PF01580 NP_422500.1 identified by match to TIGR protein family HMM TIGR00195 NP_422501.1 identified by match to TIGR protein family HMM TIGR00577 NP_422502.1 identified by match to PFAM protein family HMM PF01209 NP_422503.1 similar to GB:M87049 SP:P27853 PID:148233 GB:U00096 PID:2367309; identified by sequence similarity NP_422506.1 Catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine. NP_422507.1 identified by match to PFAM protein family HMM PF00692 NP_422508.1 identified by match to protein family HMM NP_422509.1 identified by match to protein family HMM NP_422510.1 identified by match to protein family HMM NP_422511.1 identified by match to protein family HMM NP_422512.1 identified by match to protein family HMM NP_422513.1 identified by match to protein family HMM NP_422514.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP NP_422516.1 Involved in the metabolism of aromatic amino acids NP_422517.1 identified by match to PFAM protein family HMM PF00326 NP_422518.1 similar to GB:L21902 SP:P38946 PID:347071; identified by sequence similarity NP_422519.1 identified by match to protein family HMM NP_422520.1 identified by match to PFAM protein family HMM PF00899 NP_422521.1 heat shock protein involved in degradation of misfolded proteins NP_422522.1 heat shock protein involved in degradation of misfolded proteins NP_422523.1 identified by match to PFAM protein family HMM PF01035 NP_422525.1 identified by match to protein family HMM NP_422527.1 identified by match to protein family HMM NP_422528.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis NP_422529.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamide and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide and glutamate NP_422530.1 identified by match to TIGR protein family HMM TIGR00007 NP_422531.1 identified by match to PFAM protein family HMM PF00977 NP_422532.1 identified by match to PFAM protein family HMM PF01503 NP_422533.1 identified by match to protein family HMM NP_422534.1 similar to SP:P46885 PID:882708 PID:974447 GB:U00096 PID:1789179; identified by sequence similarity NP_422536.1 identified by match to protein family HMM NP_422537.1 identified by match to protein family HMM NP_422543.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase NP_422545.1 required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA NP_422546.1 identified by match to PFAM protein family HMM PF02195 NP_422547.1 identified by match to PFAM protein family HMM PF00991 NP_422548.1 identified by match to protein family HMM NP_422549.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs NP_422550.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE NP_422552.1 identified by match to PFAM protein family HMM PF01738 NP_422553.1 identified by match to protein family HMM NP_422554.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes NP_422556.1 identified by match to TIGR protein family HMM TIGR00109 NP_422557.1 identified by match to PFAM protein family HMM PF01208