-- dump date 20140619_031518 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 471472000001 SEQ_END SEQ_END NC_010287.1 1038842 1038842 DR NC_010287.1; contig end 1038842..1038842 Chlamydia trachomatis 434/Bu YP_001654092.1 CDS hemB NC_010287.1 1 1017 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1..1017 Chlamydia trachomatis 434/Bu 5858769 YP_001654093.1 CDS nqrA NC_010287.1 1043 2440 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(1043..2440) Chlamydia trachomatis 434/Bu 5857942 YP_001654094.1 CDS CTL0003 NC_010287.1 2462 2896 R hypothetical protein complement(2462..2896) Chlamydia trachomatis 434/Bu 5858572 YP_001654095.1 CDS greA NC_010287.1 3010 5157 D contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation; fused transcript cleavage factor/hypothetical protein 3010..5157 Chlamydia trachomatis 434/Bu 5858782 YP_001654096.1 CDS aspC NC_010287.1 5345 6547 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 5345..6547 Chlamydia trachomatis 434/Bu 5857932 YP_001654097.1 CDS CTL0006 NC_010287.1 6522 7532 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 6522..7532 Chlamydia trachomatis 434/Bu 5858612 YP_001654098.1 CDS recB NC_010287.1 7548 10628 R exodeoxyribonuclease V subunit beta complement(7548..10628) Chlamydia trachomatis 434/Bu 5858760 YP_001654099.1 CDS recC NC_010287.1 10630 13650 R exodeoxyribonuclease V subunit gamma complement(10630..13650) Chlamydia trachomatis 434/Bu 5858560 YP_001654100.1 CDS CTL0009 NC_010287.1 13663 15342 D membrane efflux protein 13663..15342 Chlamydia trachomatis 434/Bu 5858002 YP_001654101.1 CDS CTL0010 NC_010287.1 15362 16177 R hypothetical protein complement(15362..16177) Chlamydia trachomatis 434/Bu 5858731 YP_001654102.1 CDS topA NC_010287.1 17072 19645 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I/SWI domain fusion protein 17072..19645 Chlamydia trachomatis 434/Bu 5858735 YP_001654103.1 CDS CTL0012 NC_010287.1 19675 20679 R oxidoreductase complement(19675..20679) Chlamydia trachomatis 434/Bu 5858362 YP_001654104.1 CDS CTL0013 NC_010287.1 20658 20954 R integral membrane protein complement(20658..20954) Chlamydia trachomatis 434/Bu 5858065 YP_001654105.1 CDS CTL0014 NC_010287.1 21059 22438 D hypothetical protein 21059..22438 Chlamydia trachomatis 434/Bu 5857982 YP_001654106.1 CDS CTL0015 NC_010287.1 22438 23016 D hypothetical protein 22438..23016 Chlamydia trachomatis 434/Bu 5858794 YP_001654107.1 CDS CTL0016 NC_010287.1 23007 24281 D hypothetical protein 23007..24281 Chlamydia trachomatis 434/Bu 5858701 YP_001654108.1 CDS CTL0017 NC_010287.1 24284 24820 D Similar to many proposed 5-formyltetrahydrofolate cyclo-ligase; hypothetical protein 24284..24820 Chlamydia trachomatis 434/Bu 5857973 YP_008470952.1 CDS CTL0017a NC_010287.1 24905 25081 R hypothetical protein complement(24905..25081) Chlamydia trachomatis 434/Bu 16665124 YP_001654109.1 CDS recA NC_010287.1 25080 26138 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 25080..26138 Chlamydia trachomatis 434/Bu 5857960 YP_008470953.1 CDS CTL0018a NC_010287.1 26164 26319 R hypothetical protein complement(26164..26319) Chlamydia trachomatis 434/Bu 16665125 YP_001654110.1 CDS CTL0019 NC_010287.1 26424 28250 D lipoprotein 26424..28250 Chlamydia trachomatis 434/Bu 5858568 YP_001654111.1 CDS recD NC_010287.1 28247 29737 D exodeoxyribonuclease V subunit alpha 28247..29737 Chlamydia trachomatis 434/Bu 5858050 YP_001654112.1 CDS CTL0021 NC_010287.1 29803 29982 D hypothetical protein 29803..29982 Chlamydia trachomatis 434/Bu 5858007 YP_001654113.1 CDS CTL0022 NC_010287.1 30083 30802 R ABC transporter ATP-binding protein complement(30083..30802) Chlamydia trachomatis 434/Bu 5858092 YP_001654114.1 CDS CTL0023 NC_010287.1 30811 31299 R hypothetical protein complement(30811..31299) Chlamydia trachomatis 434/Bu 5857968 YP_001654115.1 CDS kdsA NC_010287.1 31296 32105 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(31296..32105) Chlamydia trachomatis 434/Bu 5858018 YP_001654116.1 CDS CTL0025 NC_010287.1 32591 32884 D hypothetical protein 32591..32884 Chlamydia trachomatis 434/Bu 5857924 YP_001654117.1 CDS CTL0026 NC_010287.1 32884 33201 D hypothetical protein 32884..33201 Chlamydia trachomatis 434/Bu 5858019 YP_001654118.1 CDS sfhB NC_010287.1 33283 34290 D ribosomal large subunit pseudouridine synthase D 33283..34290 Chlamydia trachomatis 434/Bu 5858191 YP_001654119.1 CDS CTL0028 NC_010287.1 34390 34626 D hypothetical protein 34390..34626 Chlamydia trachomatis 434/Bu 5858159 YP_001654120.1 CDS gyrA2 NC_010287.1 34765 36237 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(34765..36237) Chlamydia trachomatis 434/Bu 5858093 YP_001654121.1 CDS gyrB NC_010287.1 36252 38069 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(36252..38069) Chlamydia trachomatis 434/Bu 5858181 YP_001654122.1 CDS hemA NC_010287.1 38449 39456 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 38449..39456 Chlamydia trachomatis 434/Bu 5858148 YP_001654123.1 CDS sycE NC_010287.1 40168 40569 D type III secretion system chaperone 40168..40569 Chlamydia trachomatis 434/Bu 5858045 YP_001654124.1 CDS CTL0033 NC_010287.1 40573 43062 D phosphopeptide binding protein 40573..43062 Chlamydia trachomatis 434/Bu 5858226 YP_001654125.1 CDS CTL0034 NC_010287.1 43106 43357 D hypothetical protein 43106..43357 Chlamydia trachomatis 434/Bu 5857951 YP_001654126.1 CDS CTL0035 NC_010287.1 43384 43635 D hypothetical protein 43384..43635 Chlamydia trachomatis 434/Bu 5857950 YP_001654127.1 CDS CTL0036 NC_010287.1 43654 44103 D hypothetical protein 43654..44103 Chlamydia trachomatis 434/Bu 5858714 YP_001654128.1 CDS CTL0037 NC_010287.1 44123 44794 D hypothetical protein 44123..44794 Chlamydia trachomatis 434/Bu 5857938 YP_001654129.1 CDS sctN NC_010287.1 44796 46124 D type III secretion system ATPase 44796..46124 Chlamydia trachomatis 434/Bu 5858830 YP_001654130.1 CDS CTL0039 NC_010287.1 46147 46653 D hypothetical protein 46147..46653 Chlamydia trachomatis 434/Bu 5858566 YP_001654131.1 CDS CTL0040 NC_010287.1 46657 47508 D hypothetical protein 46657..47508 Chlamydia trachomatis 434/Bu 5858162 YP_001654132.1 CDS sctQ NC_010287.1 47518 48639 D type III secretion system protein 47518..48639 Chlamydia trachomatis 434/Bu 5858835 YP_001654133.1 CDS pkn5 NC_010287.1 48774 50246 D serine/threonine-protein kinase 48774..50246 Chlamydia trachomatis 434/Bu 5857908 YP_001654134.1 CDS CTL0043 NC_010287.1 50243 53008 D type III secretion structural protein 50243..53008 Chlamydia trachomatis 434/Bu 5858779 YP_001654135.1 CDS aspC NC_010287.1 53322 54392 R ATP:guanido phosphotransferase complement(53322..54392) Chlamydia trachomatis 434/Bu 5858268 YP_001654136.1 CDS CTL0045 NC_010287.1 54382 54903 R hypothetical protein complement(54382..54903) Chlamydia trachomatis 434/Bu 5858468 YP_001654137.1 CDS frr NC_010287.1 55274 55813 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(55274..55813) Chlamydia trachomatis 434/Bu 5858332 YP_001654138.1 CDS pyrH NC_010287.1 55810 56547 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(55810..56547) Chlamydia trachomatis 434/Bu 5858098 YP_001654139.1 CDS tsf NC_010287.1 56560 57408 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(56560..57408) Chlamydia trachomatis 434/Bu 5858656 YP_001654140.1 CDS rpsB NC_010287.1 57405 58253 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(57405..58253) Chlamydia trachomatis 434/Bu 5858829 YP_001654141.1 CDS ompA NC_010287.1 58637 59821 R major outer membrane protein complement(58637..59821) Chlamydia trachomatis 434/Bu 5858320 YP_001654142.1 CDS pbpB NC_010287.1 60428 63670 D penicillin-binding protein 60428..63670 Chlamydia trachomatis 434/Bu 5858500 YP_001654143.1 CDS CTL0052 NC_010287.1 63734 64741 D hypothetical protein 63734..64741 Chlamydia trachomatis 434/Bu 5857981 YP_001654144.1 CDS CTL0053 NC_010287.1 65083 66534 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 65083..66534 Chlamydia trachomatis 434/Bu 5858825 YP_001654145.1 CDS CTL0054 NC_010287.1 66537 67304 D ABC transporter ATP-binding protein 66537..67304 Chlamydia trachomatis 434/Bu 5858763 YP_001654146.1 CDS CTL0055 NC_010287.1 67308 68495 D hypothetical protein 67308..68495 Chlamydia trachomatis 434/Bu 5858055 YP_001654147.1 CDS sufS NC_010287.1 68488 69693 D cysteine desulfurase 68488..69693 Chlamydia trachomatis 434/Bu 5858054 YP_001654148.1 CDS parB NC_010287.1 69829 70674 D chromosome partitioning protein 69829..70674 Chlamydia trachomatis 434/Bu 5858632 YP_001654149.1 CDS dppF NC_010287.1 70666 71496 R ABC transporter ATPase complement(70666..71496) Chlamydia trachomatis 434/Bu 5858431 YP_001654150.1 CDS dppD NC_010287.1 71489 72454 R ABC transporter ATPase complement(71489..72454) Chlamydia trachomatis 434/Bu 5858660 YP_001654151.1 CDS CTL0060 NC_010287.1 72615 73289 D hypothetical protein 72615..73289 Chlamydia trachomatis 434/Bu 5858521 YP_001654152.1 CDS CTL0061 NC_010287.1 73292 74572 D low-affinity inorganic phosphate transporter 73292..74572 Chlamydia trachomatis 434/Bu 5858053 YP_001654153.1 CDS pgk NC_010287.1 74711 75922 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 74711..75922 Chlamydia trachomatis 434/Bu 5858720 YP_001654154.1 CDS CTL0063 NC_010287.1 76182 77150 D hypothetical protein 76182..77150 Chlamydia trachomatis 434/Bu 5858442 YP_001654155.1 CDS CTL0064 NC_010287.1 77201 78397 D hypothetical protein 77201..78397 Chlamydia trachomatis 434/Bu 5858128 YP_001654156.1 CDS CTL0065 NC_010287.1 78483 79661 D hypothetical protein 78483..79661 Chlamydia trachomatis 434/Bu 5857976 YP_001654157.1 CDS nth NC_010287.1 79658 80293 R endonuclease III complement(79658..80293) Chlamydia trachomatis 434/Bu 5857958 YP_001654158.1 CDS trmE NC_010287.1 80300 81634 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(80300..81634) Chlamydia trachomatis 434/Bu 5858796 YP_001654159.1 CDS psdD NC_010287.1 81902 82807 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 81902..82807 Chlamydia trachomatis 434/Bu 5858418 YP_001654160.1 CDS CTL0069 NC_010287.1 82872 84197 D note the PF07719 Tetratricopeptide repeat motif; hypothetical protein 82872..84197 Chlamydia trachomatis 434/Bu 5858532 YP_001654161.1 CDS secA NC_010287.1 84456 87365 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 84456..87365 Chlamydia trachomatis 434/Bu 5857962 YP_001654162.1 CDS CTL0071 NC_010287.1 87459 87986 R hypothetical protein complement(87459..87986) Chlamydia trachomatis 434/Bu 5858249 YP_001654163.1 CDS engA NC_010287.1 88063 89535 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(88063..89535) Chlamydia trachomatis 434/Bu 5857964 YP_001654164.1 CDS pcnB NC_010287.1 89651 90883 R poly A polymerase complement(89651..90883) Chlamydia trachomatis 434/Bu 5857984 YP_001654165.1 CDS clpX NC_010287.1 90898 92157 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(90898..92157) Chlamydia trachomatis 434/Bu 5858594 YP_001654166.1 CDS clpP NC_010287.1 92167 92778 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(92167..92778) Chlamydia trachomatis 434/Bu 5858739 YP_001654167.1 CDS tig NC_010287.1 92945 94273 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(92945..94273) Chlamydia trachomatis 434/Bu 5858454 YP_001654168.1 CDS CTL0077 NC_010287.1 94632 98123 D helicase 94632..98123 Chlamydia trachomatis 434/Bu 5858311 YP_001654169.1 CDS mreB NC_010287.1 98128 99228 D rod shape-determining protein MreB 98128..99228 Chlamydia trachomatis 434/Bu 5858075 YP_001654170.1 CDS pckA NC_010287.1 99225 101024 D catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 99225..101024 Chlamydia trachomatis 434/Bu 5858756 YP_001654171.1 CDS CTL0080 NC_010287.1 101136 103439 D hypothetical protein 101136..103439 Chlamydia trachomatis 434/Bu 5858432 YP_001654172.1 CDS CTL0081 NC_010287.1 103466 104638 D hypothetical protein 103466..104638 Chlamydia trachomatis 434/Bu 5857969 YP_001654173.1 CDS ompB NC_010287.1 104704 105726 R outer membrane protein B complement(104704..105726) Chlamydia trachomatis 434/Bu 5858130 YP_001654174.1 CDS gpsA NC_010287.1 105860 106864 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(105860..106864) Chlamydia trachomatis 434/Bu 5858505 YP_001654175.1 CDS CTL0084 NC_010287.1 106861 108228 R UDP-N-acetylglucosamine pyrophosphorylase complement(106861..108228) Chlamydia trachomatis 434/Bu 5858036 YP_001654176.1 CDS CTL0085 NC_010287.1 108240 108605 R hypothetical protein complement(108240..108605) Chlamydia trachomatis 434/Bu 5858106 YP_001654177.1 CDS fliI NC_010287.1 108598 109902 R involved in type III protein export; type III secretion system ATPase complement(108598..109902) Chlamydia trachomatis 434/Bu 5858754 YP_001654178.1 CDS CTL0087 NC_010287.1 109976 110500 R hypothetical protein complement(109976..110500) Chlamydia trachomatis 434/Bu 5858083 YP_001654179.1 CDS fliF NC_010287.1 110505 111509 R type III secretion system protein complement(110505..111509) Chlamydia trachomatis 434/Bu 5857963 YP_001654180.1 CDS CTL0089 NC_010287.1 111783 112565 R note the NifU-like protein domains: PF01592;NifU-like N terminal domain and PF01106, NifU-like domain; hypothetical protein complement(111783..112565) Chlamydia trachomatis 434/Bu 5858033 YP_001654181.1 CDS CTL0090 NC_010287.1 112562 113716 R cysteine desulfurase complement(112562..113716) Chlamydia trachomatis 434/Bu 5858089 YP_001654182.1 CDS pgmA NC_010287.1 113671 114351 R catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(113671..114351) Chlamydia trachomatis 434/Bu 5858631 YP_001654183.1 CDS CTL0092 NC_010287.1 114646 115371 D ribosomal large subunit pseudouridine synthase B 114646..115371 Chlamydia trachomatis 434/Bu 5858449 YP_001654184.1 CDS CTL0093 NC_010287.1 115490 116014 D hypothetical protein 115490..116014 Chlamydia trachomatis 434/Bu 5857959 YP_001654185.1 CDS birA NC_010287.1 116041 116595 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 116041..116595 Chlamydia trachomatis 434/Bu 5858090 YP_001654186.1 CDS CTL0095 NC_010287.1 116602 117741 R cell cycle protein complement(116602..117741) Chlamydia trachomatis 434/Bu 5858029 YP_001654187.1 CDS CTL0096 NC_010287.1 117833 119812 R cation transporting ATPase complement(117833..119812) Chlamydia trachomatis 434/Bu 5858085 YP_001654188.1 CDS CTL0097 NC_010287.1 119836 120582 R integral membrane protein complement(119836..120582) Chlamydia trachomatis 434/Bu 5858773 YP_001654189.1 CDS serS NC_010287.1 120619 121905 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(120619..121905) Chlamydia trachomatis 434/Bu 5857961 YP_001654190.1 CDS ribD NC_010287.1 121947 123074 D riboflavin biosynthesis diaminohydroxyphosphoribosylaminopyrimidine deaminase 121947..123074 Chlamydia trachomatis 434/Bu 5858243 YP_001654191.1 CDS ribA NC_010287.1 123184 124458 D bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 123184..124458 Chlamydia trachomatis 434/Bu 5858517 YP_001654192.1 CDS ribH NC_010287.1 124427 124900 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 124427..124900 Chlamydia trachomatis 434/Bu 5858575 YP_001654193.1 CDS CTL0102 NC_010287.1 124951 126297 R hypothetical protein complement(124951..126297) Chlamydia trachomatis 434/Bu 5858555 YP_001654194.1 CDS CTL0103 NC_010287.1 126682 127347 D lipoprotein 126682..127347 Chlamydia trachomatis 434/Bu 5858734 YP_001654195.1 CDS dagA NC_010287.1 127452 128819 D Na(+)-linked D-alanine glycine permease 127452..128819 Chlamydia trachomatis 434/Bu 5858724 YP_001654196.1 CDS CTL0105 NC_010287.1 128877 129329 D Note the PF01161;Phosphatidylethanolamine-binding motif; hypothetical protein 128877..129329 Chlamydia trachomatis 434/Bu 5858434 YP_001654197.1 CDS CTL0106 NC_010287.1 129338 129997 R SET domain-containing protein complement(129338..129997) Chlamydia trachomatis 434/Bu 5858088 YP_001654198.1 CDS CTL0107 NC_010287.1 129994 130782 R Zn-dependent hydrolase complement(129994..130782) Chlamydia trachomatis 434/Bu 5858459 YP_001654199.1 CDS ftsK NC_010287.1 130786 133185 R cell division protein complement(130786..133185) Chlamydia trachomatis 434/Bu 5858134 YP_008470954.1 CDS CTL0108a NC_010287.1 133543 133773 R hypothetical protein complement(133543..133773) Chlamydia trachomatis 434/Bu 16665126 YP_001654200.1 CDS dmpP NC_010287.1 139457 140752 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(139457..140752) Chlamydia trachomatis 434/Bu 5858486 YP_001654201.1 CDS yajC NC_010287.1 140895 141239 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(140895..141239) Chlamydia trachomatis 434/Bu 5858687 YP_001654202.1 CDS CTL0111 NC_010287.1 141344 142534 R rRNA methyltransferase complement(141344..142534) Chlamydia trachomatis 434/Bu 5858071 YP_001654203.1 CDS hctA NC_010287.1 142722 143099 R histone H1--like developmental protein complement(142722..143099) Chlamydia trachomatis 434/Bu 5858703 YP_001654204.1 CDS CTL0113 NC_010287.1 143495 145963 D hypothetical protein 143495..145963 Chlamydia trachomatis 434/Bu 5858678 YP_001654205.1 CDS hemG NC_010287.1 145955 147229 R catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase complement(145955..147229) Chlamydia trachomatis 434/Bu 5858215 YP_001654206.1 CDS hemN NC_010287.1 147226 148599 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(147226..148599) Chlamydia trachomatis 434/Bu 5858133 YP_001654207.1 CDS hemE NC_010287.1 148572 149582 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(148572..149582) Chlamydia trachomatis 434/Bu 5858692 YP_001654208.1 CDS mfd NC_010287.1 149595 152834 R transcription-repair coupling factor complement(149595..152834) Chlamydia trachomatis 434/Bu 5858600 YP_001654209.1 CDS alaS NC_010287.1 152810 155437 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(152810..155437) Chlamydia trachomatis 434/Bu 5858757 YP_008470955.1 CDS CTL0118a NC_010287.1 155587 155817 R hypothetical protein complement(155587..155817) Chlamydia trachomatis 434/Bu 16665127 YP_001654210.1 CDS tktB NC_010287.1 161262 163262 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 161262..163262 Chlamydia trachomatis 434/Bu 5858645 YP_001654211.1 CDS amn NC_010287.1 163259 164128 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(163259..164128) Chlamydia trachomatis 434/Bu 5858365 YP_001654212.1 CDS efp NC_010287.1 164384 164920 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 164384..164920 Chlamydia trachomatis 434/Bu 5858478 YP_001654213.1 CDS CTL0122 NC_010287.1 164936 165160 R hypothetical protein complement(164936..165160) Chlamydia trachomatis 434/Bu 5858625 YP_001654214.1 CDS CTL0123 NC_010287.1 165207 166079 R Note the PF00149;Calcineurin-like phosphoesterase motif; hypothetical protein complement(165207..166079) Chlamydia trachomatis 434/Bu 5858110 YP_001654215.1 CDS groEL NC_010287.1 166160 167698 R 60 kDa chaperonin GroEL complement(166160..167698) Chlamydia trachomatis 434/Bu 5858068 YP_001654216.1 CDS murF NC_010287.1 168146 169498 D UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 168146..169498 Chlamydia trachomatis 434/Bu 5858336 YP_001654217.1 CDS mraY NC_010287.1 169644 170654 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 169644..170654 Chlamydia trachomatis 434/Bu 5858776 YP_001654218.1 CDS murD NC_010287.1 170666 171916 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 170666..171916 Chlamydia trachomatis 434/Bu 5858642 YP_001654219.1 CDS nlpD NC_010287.1 171913 172650 D muramidase 171913..172650 Chlamydia trachomatis 434/Bu 5858023 YP_001654220.1 CDS ftsW NC_010287.1 172666 173823 D cell division protein 172666..173823 Chlamydia trachomatis 434/Bu 5858063 YP_001654221.1 CDS murG NC_010287.1 173732 174790 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 173732..174790 Chlamydia trachomatis 434/Bu 5858462 YP_001654222.1 CDS murC NC_010287.1 174795 177206 D catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine and catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase 174795..177206 Chlamydia trachomatis 434/Bu 5857988 YP_001654223.1 CDS CTL0132 NC_010287.1 177243 177662 R hypothetical protein complement(177243..177662) Chlamydia trachomatis 434/Bu 5858026 YP_001654224.1 CDS CTL0133 NC_010287.1 177820 178626 R hypothetical protein complement(177820..178626) Chlamydia trachomatis 434/Bu 5858069 YP_001654225.1 CDS rbsV NC_010287.1 178780 179112 D anti-sigma F factor antagonist 178780..179112 Chlamydia trachomatis 434/Bu 5858111 YP_001654226.1 CDS miaA NC_010287.1 179116 180135 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 179116..180135 Chlamydia trachomatis 434/Bu 5858494 YP_001654227.1 CDS CTL0136 NC_010287.1 180140 181192 R Note the PF04055;Radical SAM superfamily motif; hypothetical protein complement(180140..181192) Chlamydia trachomatis 434/Bu 5858571 YP_001654228.1 CDS CTL0137 NC_010287.1 181282 182964 D hypothetical protein 181282..182964 Chlamydia trachomatis 434/Bu 5858060 YP_001654229.1 CDS CTL0138 NC_010287.1 183418 183777 D Note the Pfam PF02410;Domain of unknown function associated with iojap superfamily proteins; hypothetical protein 183418..183777 Chlamydia trachomatis 434/Bu 5858194 YP_001654230.1 CDS fabF NC_010287.1 183788 185044 D FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-(acyl carrier protein) synthase II 183788..185044 Chlamydia trachomatis 434/Bu 5857965 YP_001654231.1 CDS CTL0140 NC_010287.1 185041 185493 D Note the Pfam PF00293;NUDIX domain; hypothetical protein 185041..185493 Chlamydia trachomatis 434/Bu 5858479 YP_001654232.1 CDS ppa NC_010287.1 185574 186203 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(185574..186203) Chlamydia trachomatis 434/Bu 5858049 YP_001654233.1 CDS ldh NC_010287.1 186451 187491 D leucine dehydrogenase 186451..187491 Chlamydia trachomatis 434/Bu 5858157 YP_001654234.1 CDS cysQ NC_010287.1 187457 188485 R 3'(2'),5'-bisphosphate nucleotidase complement(187457..188485) Chlamydia trachomatis 434/Bu 5858096 YP_001654235.1 CDS CTL0144 NC_010287.1 188783 189544 D 1-acyl-sn-glycerol-3-phosphate acyltransferase 188783..189544 Chlamydia trachomatis 434/Bu 5857983 YP_001654236.1 CDS aas NC_010287.1 189552 191165 D Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; long chain fatty acid--[acyl-carrier-protein] ligase 189552..191165 Chlamydia trachomatis 434/Bu 5858079 YP_001654237.1 CDS bioF NC_010287.1 191208 192341 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 191208..192341 Chlamydia trachomatis 434/Bu 5858621 YP_001654238.1 CDS priA NC_010287.1 192260 194521 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(192260..194521) Chlamydia trachomatis 434/Bu 5858030 YP_001654239.1 CDS CTL0148 NC_010287.1 194476 195165 R hypothetical protein complement(194476..195165) Chlamydia trachomatis 434/Bu 5858596 YP_001654240.1 CDS CTL0149 NC_010287.1 195321 195815 D protein disulfide isomerase 195321..195815 Chlamydia trachomatis 434/Bu 5858193 YP_001654241.1 CDS lysS NC_010287.1 196047 197627 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 196047..197627 Chlamydia trachomatis 434/Bu 5858105 YP_001654242.1 CDS cysS NC_010287.1 197624 199117 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(197624..199117) Chlamydia trachomatis 434/Bu 5858607 YP_008470956.1 CDS CTL0151a NC_010287.1 199182 199352 R hypothetical protein complement(199182..199352) Chlamydia trachomatis 434/Bu 16665128 YP_001654243.1 CDS CTL0152 NC_010287.1 199370 200419 D hypothetical protein 199370..200419 Chlamydia trachomatis 434/Bu 5858606 YP_001654244.1 CDS rnpA NC_010287.1 200497 200859 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(200497..200859) Chlamydia trachomatis 434/Bu 5858070 YP_001654245.1 CDS rpmH NC_010287.1 200872 201009 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(200872..201009) Chlamydia trachomatis 434/Bu 5858753 YP_001654246.1 CDS rpmJ NC_010287.1 201486 201623 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 201486..201623 Chlamydia trachomatis 434/Bu 5858008 YP_001654247.1 CDS rpsN NC_010287.1 201647 201952 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 201647..201952 Chlamydia trachomatis 434/Bu 5858719 YP_001654248.1 CDS CTL0156 NC_010287.1 201986 202486 R hypothetical protein complement(201986..202486) Chlamydia trachomatis 434/Bu 5858015 YP_001654249.1 CDS CTL0157 NC_010287.1 202608 202859 R integral membrane protein complement(202608..202859) Chlamydia trachomatis 434/Bu 5858761 YP_001654250.1 CDS CTL0158 NC_010287.1 203139 203633 D hypothetical protein 203139..203633 Chlamydia trachomatis 434/Bu 5858078 YP_001654251.1 CDS uvrC NC_010287.1 203679 205418 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(203679..205418) Chlamydia trachomatis 434/Bu 5858792 YP_001654252.1 CDS mutS NC_010287.1 205500 207962 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(205500..207962) Chlamydia trachomatis 434/Bu 5858799 YP_001654253.1 CDS dnaG NC_010287.1 208295 210082 D synthesizes RNA primers at the replication forks; DNA primase 208295..210082 Chlamydia trachomatis 434/Bu 5858602 YP_001654254.1 CDS CTL0163 NC_010287.1 210167 210454 D hypothetical protein 210167..210454 Chlamydia trachomatis 434/Bu 5858691 YP_001654255.1 CDS CTL0164 NC_010287.1 210580 211071 D hypothetical protein 210580..211071 Chlamydia trachomatis 434/Bu 5858062 YP_001654256.1 CDS glyQ NC_010287.1 211154 214165 R glycyl-tRNA synthetase complement(211154..214165) Chlamydia trachomatis 434/Bu 5858783 YP_001654257.1 CDS pgsA NC_010287.1 214619 215227 D CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 214619..215227 Chlamydia trachomatis 434/Bu 5858595 YP_001654258.1 CDS glgA NC_010287.1 215234 216658 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(215234..216658) Chlamydia trachomatis 434/Bu 5858439 YP_001654259.1 CDS rplY NC_010287.1 217235 217792 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 217235..217792 Chlamydia trachomatis 434/Bu 5858333 YP_001654260.1 CDS pth NC_010287.1 217800 218339 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 217800..218339 Chlamydia trachomatis 434/Bu 5858562 YP_001654261.1 CDS rpsF NC_010287.1 218477 218815 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 218477..218815 Chlamydia trachomatis 434/Bu 5858725 YP_001654262.1 CDS rpsR NC_010287.1 218832 219077 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 218832..219077 Chlamydia trachomatis 434/Bu 5858576 YP_001654263.1 CDS rplI NC_010287.1 219098 219601 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 219098..219601 Chlamydia trachomatis 434/Bu 5858189 YP_001654264.1 CDS ispE NC_010287.1 219665 220531 D catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 219665..220531 Chlamydia trachomatis 434/Bu 5858491 YP_008470957.1 CDS CTL0173a NC_010287.1 220501 220704 R hypothetical protein complement(220501..220704) Chlamydia trachomatis 434/Bu 16665129 YP_001654265.1 CDS CTL0174 NC_010287.1 220834 222186 R integral membrane protein complement(220834..222186) Chlamydia trachomatis 434/Bu 5858047 YP_001654266.1 CDS ptr NC_010287.1 222365 225235 R insulinase/protease complement(222365..225235) Chlamydia trachomatis 434/Bu 5858077 YP_001654267.1 CDS plsB NC_010287.1 225287 226288 R glycerol-3-phosphate acyltransferase complement(225287..226288) Chlamydia trachomatis 434/Bu 5858745 YP_001654268.1 CDS cafE NC_010287.1 226301 227839 R ribonuclease E complement(226301..227839) Chlamydia trachomatis 434/Bu 5857971 YP_008470958.1 CDS CTL0178a NC_010287.1 228109 228321 R hypothetical protein complement(228109..228321) Chlamydia trachomatis 434/Bu 16665130 YP_001654269.2 CDS CTL0178 NC_010287.1 228286 228723 D hypothetical protein 228286..228723 Chlamydia trachomatis 434/Bu 5858471 YP_001654270.1 CDS CTL0179 NC_010287.1 228663 228989 D hypothetical protein 228663..228989 Chlamydia trachomatis 434/Bu 5857967 YP_001654271.1 CDS rpmF NC_010287.1 228973 229152 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 228973..229152 Chlamydia trachomatis 434/Bu 5858747 YP_001654272.1 CDS plsX NC_010287.1 229174 230139 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 229174..230139 Chlamydia trachomatis 434/Bu 5858541 YP_001654273.1 CDS pmpD NC_010287.1 230359 234951 D polymorphic outer membrane protein 230359..234951 Chlamydia trachomatis 434/Bu 5858550 YP_001654274.1 CDS CTL0184 NC_010287.1 235152 235946 D carries characteristic twin membrane spanning domains; hypothetical protein 235152..235946 Chlamydia trachomatis 434/Bu 5858795 YP_001654275.1 CDS CTL0185 NC_010287.1 236030 236329 R hypothetical protein complement(236030..236329) Chlamydia trachomatis 434/Bu 5858748 YP_001654276.1 CDS CTL0186 NC_010287.1 236350 236712 R hypothetical protein complement(236350..236712) Chlamydia trachomatis 434/Bu 5858112 YP_001654277.1 CDS glmM NC_010287.1 236957 238333 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 236957..238333 Chlamydia trachomatis 434/Bu 5858103 YP_001654278.1 CDS glmS NC_010287.1 238344 240164 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 238344..240164 Chlamydia trachomatis 434/Bu 5858216 YP_001654279.1 CDS tyrP NC_010287.1 240267 241463 D tyrosine-specific transport protein 240267..241463 Chlamydia trachomatis 434/Bu 5858658 YP_001654280.1 CDS CTL0190 NC_010287.1 241646 242839 D tyrosine-specific transport protein 241646..242839 Chlamydia trachomatis 434/Bu 5858800 YP_001654281.1 CDS CTL0191 NC_010287.1 242881 243597 D membrane transport protein 242881..243597 Chlamydia trachomatis 434/Bu 5858712 YP_001654282.1 CDS ftsY NC_010287.1 243695 244549 R cell division protein complement(243695..244549) Chlamydia trachomatis 434/Bu 5857966 YP_001654283.1 CDS sucC NC_010287.1 244619 245779 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 244619..245779 Chlamydia trachomatis 434/Bu 5858038 YP_001654284.1 CDS sucD NC_010287.1 245794 246669 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 245794..246669 Chlamydia trachomatis 434/Bu 5858710 YP_001654285.1 CDS htrA NC_010287.1 246808 248301 D serine protease 246808..248301 Chlamydia trachomatis 434/Bu 5858709 YP_001654286.1 CDS CTL0196 NC_010287.1 248502 251426 D metalloprotease-insulinase 248502..251426 Chlamydia trachomatis 434/Bu 5858677 YP_001654287.1 CDS rmuC NC_010287.1 251440 252723 R DNA recombination protein complement(251440..252723) Chlamydia trachomatis 434/Bu 5858145 YP_001654288.1 CDS pssA NC_010287.1 252727 253518 R CDP-diacylglycerol--serine O-phosphatidyltransferase complement(252727..253518) Chlamydia trachomatis 434/Bu 5858546 YP_001654289.1 CDS nrdA NC_010287.1 254153 257296 D catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 254153..257296 Chlamydia trachomatis 434/Bu 5858185 YP_001654290.1 CDS nrdB NC_010287.1 257334 258374 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 257334..258374 Chlamydia trachomatis 434/Bu 5858638 YP_001654291.1 CDS trmB NC_010287.1 258634 259308 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 258634..259308 Chlamydia trachomatis 434/Bu 5858665 YP_001654292.1 CDS CTL0202 NC_010287.1 259424 260008 D SAM-dependent methyltransferase 259424..260008 Chlamydia trachomatis 434/Bu 5858258 YP_001654293.1 CDS murB NC_010287.1 260005 260880 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(260005..260880) Chlamydia trachomatis 434/Bu 5858048 YP_001654294.1 CDS nusB NC_010287.1 261013 261519 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(261013..261519) Chlamydia trachomatis 434/Bu 5858668 YP_001654295.1 CDS infC NC_010287.1 261951 262511 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 261951..262511 Chlamydia trachomatis 434/Bu 5858759 YP_001654296.1 CDS rpmI NC_010287.1 262498 262683 D 50S ribosomal protein L35 262498..262683 Chlamydia trachomatis 434/Bu 5858809 YP_001654297.1 CDS rplT NC_010287.1 262702 263073 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 262702..263073 Chlamydia trachomatis 434/Bu 5857943 YP_001654298.1 CDS pheS NC_010287.1 263080 264108 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 263080..264108 Chlamydia trachomatis 434/Bu 5858583 YP_001654299.1 CDS CTL0209 NC_010287.1 264419 266395 D hypothetical protein 264419..266395 Chlamydia trachomatis 434/Bu 5858274 YP_001654300.1 CDS CTL0210 NC_010287.1 266392 267492 R membrane transport protein complement(266392..267492) Chlamydia trachomatis 434/Bu 5858347 YP_001654301.1 CDS CTL0211 NC_010287.1 267495 268559 R membrane transport protein complement(267495..268559) Chlamydia trachomatis 434/Bu 5857903 YP_001654302.1 CDS tilS NC_010287.1 268657 269622 D tRNA(Ile)-lysidine synthase 268657..269622 Chlamydia trachomatis 434/Bu 5858379 YP_001654303.1 CDS ftsH NC_010287.1 269783 272524 D cell division protein 269783..272524 Chlamydia trachomatis 434/Bu 5858378 YP_001654304.1 CDS pnp NC_010287.1 272739 274826 R polynucleotide phosphorylase/polyadenylase complement(272739..274826) Chlamydia trachomatis 434/Bu 5858659 YP_001654305.1 CDS rpsO NC_010287.1 274855 275124 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(274855..275124) Chlamydia trachomatis 434/Bu 5858176 YP_001654306.1 CDS CTL0216 NC_010287.1 275350 275841 D cytosine deaminase 275350..275841 Chlamydia trachomatis 434/Bu 5858676 YP_001654307.2 CDS CTL0217 NC_010287.1 275813 276091 D hypothetical protein 275813..276091 Chlamydia trachomatis 434/Bu 5857905 YP_001654308.1 CDS CTL0218 NC_010287.1 276063 276767 R integral membrane protein complement(276063..276767) Chlamydia trachomatis 434/Bu 5858353 YP_001654309.1 CDS CTL0219 NC_010287.1 276902 277420 R hypothetical protein complement(276902..277420) Chlamydia trachomatis 434/Bu 5858389 YP_001654310.1 CDS CTL0220 NC_010287.1 277433 277939 R hypothetical protein complement(277433..277939) Chlamydia trachomatis 434/Bu 5858330 YP_001654311.1 CDS CTL0221 NC_010287.1 277967 278446 R hypothetical protein complement(277967..278446) Chlamydia trachomatis 434/Bu 5858358 YP_001654312.1 CDS CTL0222 NC_010287.1 278763 278951 D hypothetical protein 278763..278951 Chlamydia trachomatis 434/Bu 5858406 YP_001654313.1 CDS CTL0223 NC_010287.1 278970 280187 D integral membrane protein 278970..280187 Chlamydia trachomatis 434/Bu 5858227 YP_001654314.1 CDS map NC_010287.1 280144 281019 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase complement(280144..281019) Chlamydia trachomatis 434/Bu 5858436 YP_001654315.1 CDS CTL0225 NC_010287.1 281052 281693 R integral membrane protein complement(281052..281693) Chlamydia trachomatis 434/Bu 5858102 YP_001654316.1 CDS CTL0226 NC_010287.1 281710 282309 R integral membrane protein complement(281710..282309) Chlamydia trachomatis 434/Bu 5857990 YP_001654317.1 CDS CTL0227 NC_010287.1 282504 284273 R ABC transporter permease complement(282504..284273) Chlamydia trachomatis 434/Bu 5858777 YP_001654318.1 CDS CTL0231 NC_010287.1 285800 287503 R sulfate transporter complement(285800..287503) Chlamydia trachomatis 434/Bu 5858640 YP_001654321.1 CDS CTL0232 NC_010287.1 288258 289523 D membrane transport protein 288258..289523 Chlamydia trachomatis 434/Bu 5858727 YP_001654322.1 CDS cpa NC_010287.1 289633 291438 D protease 289633..291438 Chlamydia trachomatis 434/Bu 5858254 YP_001654323.1 CDS ispH NC_010287.1 291533 292456 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 291533..292456 Chlamydia trachomatis 434/Bu 5858681 YP_001654324.1 CDS copD2 NC_010287.1 292508 293989 R note that the product of this CDS has been proposed to be a putative type III secretion system translocator; hypothetical protein complement(292508..293989) Chlamydia trachomatis 434/Bu 5858122 YP_001654325.1 CDS copB2 NC_010287.1 294001 295521 R type III secretion translocator complement(294001..295521) Chlamydia trachomatis 434/Bu 5858786 YP_001654326.1 CDS lcrH NC_010287.1 295549 296145 R type III secretion chaperone complement(295549..296145) Chlamydia trachomatis 434/Bu 5858084 YP_001654327.1 CDS CTL0238 NC_010287.1 296067 297515 R hypothetical protein complement(296067..297515) Chlamydia trachomatis 434/Bu 5858707 YP_008470959.1 CDS CTL0238a NC_010287.1 297692 297859 R hypothetical protein complement(297692..297859) Chlamydia trachomatis 434/Bu 16665131 YP_008470960.1 CDS CTL0238b NC_010287.1 298073 298378 D hypothetical protein 298073..298378 Chlamydia trachomatis 434/Bu 16665132 YP_001654328.1 CDS xerD NC_010287.1 298375 299277 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(298375..299277) Chlamydia trachomatis 434/Bu 5858304 YP_001654329.1 CDS CTL0244 NC_010287.1 299525 300514 D hypothetical protein 299525..300514 Chlamydia trachomatis 434/Bu 5858423 YP_001654330.1 CDS glgB NC_010287.1 300529 302745 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 300529..302745 Chlamydia trachomatis 434/Bu 5858667 YP_001654331.1 CDS CTL0246 NC_010287.1 302756 303775 R hypothetical protein complement(302756..303775) Chlamydia trachomatis 434/Bu 5858618 YP_001654332.1 CDS CTL0247 NC_010287.1 303998 305203 R hypothetical protein complement(303998..305203) Chlamydia trachomatis 434/Bu 5858331 YP_001654333.1 CDS pmpE NC_010287.1 305380 308277 R polymorphic outer membrane protein complement(305380..308277) Chlamydia trachomatis 434/Bu 5858005 YP_001654334.1 CDS pmpF NC_010287.1 308280 311378 R polymorphic outer membrane protein complement(308280..311378) Chlamydia trachomatis 434/Bu 5858444 YP_001654335.1 CDS pmpG NC_010287.1 311543 314581 D polymorphic outer membrane protein 311543..314581 Chlamydia trachomatis 434/Bu 5858730 YP_001654336.1 CDS pmpH NC_010287.1 314612 317632 D polymorphic outer membrane protein 314612..317632 Chlamydia trachomatis 434/Bu 5857975 YP_001654337.1 CDS CTL0252 NC_010287.1 318047 318643 D hypothetical protein 318047..318643 Chlamydia trachomatis 434/Bu 5858675 YP_001654338.1 CDS pmpI NC_010287.1 318738 321374 R polymorphic outer membrane protein complement(318738..321374) Chlamydia trachomatis 434/Bu 5858752 YP_001654339.1 CDS CTL0255 NC_010287.1 321649 323421 D hypothetical protein 321649..323421 Chlamydia trachomatis 434/Bu 5858006 YP_001654340.1 CDS CTL0256 NC_010287.1 323566 323838 R hypothetical protein complement(323566..323838) Chlamydia trachomatis 434/Bu 5857946 YP_001654341.1 CDS gatC NC_010287.1 324039 324341 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 324039..324341 Chlamydia trachomatis 434/Bu 5858620 YP_001654342.1 CDS gatA NC_010287.1 324353 325828 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 324353..325828 Chlamydia trachomatis 434/Bu 5858470 YP_001654343.1 CDS gatB NC_010287.1 325830 327296 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 325830..327296 Chlamydia trachomatis 434/Bu 5858207 YP_001654344.1 CDS CTL0260 NC_010287.1 327395 328486 R hypothetical protein complement(327395..328486) Chlamydia trachomatis 434/Bu 5858200 YP_001654345.1 CDS CTL0261 NC_010287.1 328614 329183 R hypothetical protein complement(328614..329183) Chlamydia trachomatis 434/Bu 5858154 YP_001654346.1 CDS CTL0262 NC_010287.1 329497 330447 D hypothetical protein 329497..330447 Chlamydia trachomatis 434/Bu 5858743 YP_001654347.1 CDS rnhC NC_010287.1 330463 331365 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII complement(330463..331365) Chlamydia trachomatis 434/Bu 5858307 YP_001654348.1 CDS CTL0264 NC_010287.1 331621 332052 D hypothetical protein 331621..332052 Chlamydia trachomatis 434/Bu 5858713 YP_001654349.1 CDS htrB NC_010287.1 332039 333406 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(332039..333406) Chlamydia trachomatis 434/Bu 5858214 YP_001654350.1 CDS CTL0266 NC_010287.1 333538 334794 R hypothetical protein complement(333538..334794) Chlamydia trachomatis 434/Bu 5858081 YP_001654351.1 CDS CTL0267 NC_010287.1 334791 335585 R integral membrane protein complement(334791..335585) Chlamydia trachomatis 434/Bu 5858762 YP_001654352.1 CDS cydA NC_010287.1 335860 337200 D cytochrome d ubiquinol oxidase subunit I 335860..337200 Chlamydia trachomatis 434/Bu 5858138 YP_001654353.1 CDS cydB NC_010287.1 337212 338273 D cytochrome d ubiquinol oxidase subunit II 337212..338273 Chlamydia trachomatis 434/Bu 5858683 YP_001654354.1 CDS CTL0270 NC_010287.1 338371 339675 R hypothetical protein complement(338371..339675) Chlamydia trachomatis 434/Bu 5858202 YP_001654355.1 CDS CTL0271 NC_010287.1 339884 340612 D hypothetical protein 339884..340612 Chlamydia trachomatis 434/Bu 5858104 YP_001654356.1 CDS CTL0272 NC_010287.1 340798 342099 D hypothetical protein 340798..342099 Chlamydia trachomatis 434/Bu 5858213 YP_001654357.1 CDS CTL0273 NC_010287.1 342161 342634 R hypothetical protein complement(342161..342634) Chlamydia trachomatis 434/Bu 5858573 YP_001654358.1 CDS ileS NC_010287.1 343680 346790 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 343680..346790 Chlamydia trachomatis 434/Bu 5858570 YP_001654359.1 CDS lepB NC_010287.1 346848 348734 R signal peptidase I complement(346848..348734) Chlamydia trachomatis 434/Bu 5858143 YP_001654360.1 CDS CTL0276 NC_010287.1 348920 349663 R hypothetical protein complement(348920..349663) Chlamydia trachomatis 434/Bu 5858781 YP_001654361.1 CDS rpmE2 NC_010287.1 349739 350065 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 349739..350065 Chlamydia trachomatis 434/Bu 5858581 YP_001654362.1 CDS prfA NC_010287.1 350253 351332 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 350253..351332 Chlamydia trachomatis 434/Bu 5858457 YP_001654363.1 CDS CTL0279 NC_010287.1 351316 352188 D HemK; PrmC; transfers a methyl group from S-adenosyl-methionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB possibly stimulating release of completed polypeptide chains; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 351316..352188 Chlamydia trachomatis 434/Bu 5858726 YP_001654364.1 CDS ffh NC_010287.1 352185 353531 D signal recognition particle subunit FFH 352185..353531 Chlamydia trachomatis 434/Bu 5858426 YP_001654365.1 CDS rpsP NC_010287.1 353522 353872 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 353522..353872 Chlamydia trachomatis 434/Bu 5858789 YP_001654366.1 CDS trmD NC_010287.1 353888 354946 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; Chlamydial proteins show a C-terminal extension of unknown function; tRNA (guanine-N(1)-)-methyltransferase/hypothetical protein 353888..354946 Chlamydia trachomatis 434/Bu 5858001 YP_001654367.1 CDS rplS NC_010287.1 354972 355337 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 354972..355337 Chlamydia trachomatis 434/Bu 5858420 YP_001654368.1 CDS rnhB NC_010287.1 355401 356054 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 355401..356054 Chlamydia trachomatis 434/Bu 5858544 YP_001654369.1 CDS gmk NC_010287.1 356045 356662 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 356045..356662 Chlamydia trachomatis 434/Bu 5858565 YP_001654370.1 CDS CTL0286 NC_010287.1 356655 356957 D hypothetical protein 356655..356957 Chlamydia trachomatis 434/Bu 5858755 YP_001654371.1 CDS metG NC_010287.1 356957 358609 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 356957..358609 Chlamydia trachomatis 434/Bu 5857972 YP_001654372.1 CDS recD NC_010287.1 358748 360988 R exodeoxyribonuclease V subunit alpha complement(358748..360988) Chlamydia trachomatis 434/Bu 5858314 YP_001654373.1 CDS CTL0289 NC_010287.1 361236 362216 R membrane transport/efflux protein complement(361236..362216) Chlamydia trachomatis 434/Bu 5858003 YP_001654374.1 CDS CTL0290 NC_010287.1 362599 363372 D protein ligase 362599..363372 Chlamydia trachomatis 434/Bu 5858066 YP_001654375.1 CDS CTL0291 NC_010287.1 363337 364494 R hypothetical protein complement(363337..364494) Chlamydia trachomatis 434/Bu 5857974 YP_001654376.1 CDS CTL0293 NC_010287.1 365040 365384 R hypothetical protein complement(365040..365384) Chlamydia trachomatis 434/Bu 5858345 YP_001654377.1 CDS dcd NC_010287.1 365406 365978 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(365406..365978) Chlamydia trachomatis 434/Bu 5858212 YP_001654378.1 CDS CTL0295 NC_010287.1 366065 366217 D hypothetical protein 366065..366217 Chlamydia trachomatis 434/Bu 5858206 YP_001654379.1 CDS ruvB NC_010287.1 366259 367263 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 366259..367263 Chlamydia trachomatis 434/Bu 5858509 YP_001654380.1 CDS CTL0297 NC_010287.1 367265 368077 D hypothetical protein 367265..368077 Chlamydia trachomatis 434/Bu 5858061 YP_001654381.1 CDS CTL0298 NC_010287.1 368138 370138 R glycosyl hydrolase complement(368138..370138) Chlamydia trachomatis 434/Bu 5858637 YP_001654382.1 CDS CTL0299 NC_010287.1 370259 370762 R type III secretion system chaperone complement(370259..370762) Chlamydia trachomatis 434/Bu 5858729 YP_001654383.1 CDS ssb NC_010287.1 371228 371701 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 371228..371701 Chlamydia trachomatis 434/Bu 5858567 YP_001654384.1 CDS CTL0301 NC_010287.1 372044 373543 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 372044..373543 Chlamydia trachomatis 434/Bu 5858119 YP_001654385.1 CDS hct2 NC_010287.1 373681 374352 D histone-like protein 2 373681..374352 Chlamydia trachomatis 434/Bu 5858142 YP_001654386.1 CDS CTL0303 NC_010287.1 374507 375451 D hypothetical protein 374507..375451 Chlamydia trachomatis 434/Bu 5858004 YP_001654387.1 CDS CTL0304 NC_010287.1 375546 376259 D hypothetical protein 375546..376259 Chlamydia trachomatis 434/Bu 5857980 YP_001654388.1 CDS CTL0305 NC_010287.1 376350 377822 D hypothetical protein 376350..377822 Chlamydia trachomatis 434/Bu 5858116 YP_001654389.1 CDS CTL0306 NC_010287.1 377881 379548 R hypothetical protein complement(377881..379548) Chlamydia trachomatis 434/Bu 5858115 YP_001654390.1 CDS CTL0307 NC_010287.1 379584 381275 R hypothetical protein complement(379584..381275) Chlamydia trachomatis 434/Bu 5857941 YP_001654391.1 CDS hemN NC_010287.1 381336 382466 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(381336..382466) Chlamydia trachomatis 434/Bu 5857937 YP_001654392.1 CDS CTL0309 NC_010287.1 382456 382902 R hypothetical protein complement(382456..382902) Chlamydia trachomatis 434/Bu 5858057 YP_001654393.1 CDS sucA NC_010287.1 383234 385945 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 383234..385945 Chlamydia trachomatis 434/Bu 5857947 YP_001654394.1 CDS sucB NC_010287.1 385949 387046 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 385949..387046 Chlamydia trachomatis 434/Bu 5858187 YP_001654395.1 CDS CTL0312 NC_010287.1 387075 387806 R hypothetical protein complement(387075..387806) Chlamydia trachomatis 434/Bu 5858186 YP_001654396.1 CDS gcpE NC_010287.1 387815 389623 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-clclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; these proteins appear to consist of duplicate domains as compared to Escherichia coli IspG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(387815..389623) Chlamydia trachomatis 434/Bu 5858498 YP_001654397.1 CDS CTL0314 NC_010287.1 389775 390866 R hypothetical protein complement(389775..390866) Chlamydia trachomatis 434/Bu 5858211 YP_001654398.1 CDS fer NC_010287.1 390946 391221 R ferredoxin complement(390946..391221) Chlamydia trachomatis 434/Bu 5858022 YP_001654399.1 CDS flhA NC_010287.1 391403 393220 D type III secretion system protein 391403..393220 Chlamydia trachomatis 434/Bu 5858276 YP_001654400.1 CDS fliA NC_010287.1 393328 394089 D expressed in response to temperature increase; may be involved in expression of genes involved in the developmental cycle of Chlamydia; RNA polymerase sigma factor sigma-28 393328..394089 Chlamydia trachomatis 434/Bu 5858702 YP_001654401.1 CDS tyrS NC_010287.1 394248 395486 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 394248..395486 Chlamydia trachomatis 434/Bu 5857979 YP_001654402.1 CDS gnd NC_010287.1 395496 396938 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 395496..396938 Chlamydia trachomatis 434/Bu 5858811 YP_001654403.1 CDS lepA NC_010287.1 396999 398807 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(396999..398807) Chlamydia trachomatis 434/Bu 5858447 YP_001654404.1 CDS CTL0321 NC_010287.1 398993 400579 R ADP,ATP carrier protein complement(398993..400579) Chlamydia trachomatis 434/Bu 5857987 YP_008470961.1 CDS CTL0321a NC_010287.1 400731 400883 D hypothetical protein 400731..400883 Chlamydia trachomatis 434/Bu 16665133 YP_001654405.1 CDS CTL0322 NC_010287.1 400930 401406 R hypothetical protein complement(400930..401406) Chlamydia trachomatis 434/Bu 5858511 YP_001654406.1 CDS CTL0323 NC_010287.1 402067 403047 D ABC transporter substrate-binding protein 402067..403047 Chlamydia trachomatis 434/Bu 5858524 YP_001654407.1 CDS CTL0324 NC_010287.1 403040 403819 D ABC transporter ATP-binding protein 403040..403819 Chlamydia trachomatis 434/Bu 5858528 YP_001654408.1 CDS CTL0325 NC_010287.1 403820 405175 D ABC transporter permease 403820..405175 Chlamydia trachomatis 434/Bu 5858526 YP_001654409.1 CDS CTL0326 NC_010287.1 405165 406121 D ABC transporter permease 405165..406121 Chlamydia trachomatis 434/Bu 5858525 YP_001654410.1 CDS dxr NC_010287.1 406148 407287 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 406148..407287 Chlamydia trachomatis 434/Bu 5858512 YP_001654411.1 CDS CTL0328 NC_010287.1 407483 409342 D protease 407483..409342 Chlamydia trachomatis 434/Bu 5858619 YP_001654412.1 CDS CTL0329 NC_010287.1 409289 410266 R hypothetical protein complement(409289..410266) Chlamydia trachomatis 434/Bu 5858557 YP_001654413.1 CDS recF NC_010287.1 410424 411521 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(410424..411521) Chlamydia trachomatis 434/Bu 5858158 YP_001654414.1 CDS dnaN NC_010287.1 411521 412771 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(411521..412771) Chlamydia trachomatis 434/Bu 5858548 YP_001654415.1 CDS smpB NC_010287.1 412901 413356 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 412901..413356 Chlamydia trachomatis 434/Bu 5858205 YP_001654416.1 CDS apbE NC_010287.1 413334 414284 R thiamine biosynthesis lipoprotein complement(413334..414284) Chlamydia trachomatis 434/Bu 5858601 YP_001654417.1 CDS folD NC_010287.1 414254 415117 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(414254..415117) Chlamydia trachomatis 434/Bu 5858626 YP_001654418.1 CDS CTL0335 NC_010287.1 415235 415630 R integral membrane protein complement(415235..415630) Chlamydia trachomatis 434/Bu 5858585 YP_001654419.1 CDS ltuB NC_010287.1 415955 416248 D late transcription unit B protein 415955..416248 Chlamydia trachomatis 434/Bu 5858108 YP_001654421.1 CDS CTL0338 NC_010287.1 416611 418293 D hypothetical protein 416611..418293 Chlamydia trachomatis 434/Bu 5858549 YP_001654422.1 CDS CTL0338A NC_010287.1 418290 418772 D hypothetical protein 418290..418772 Chlamydia trachomatis 434/Bu 5858790 YP_001654423.1 CDS CTL0339 NC_010287.1 418786 419871 R phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein complement(418786..419871) Chlamydia trachomatis 434/Bu 5858797 YP_001654424.1 CDS CTL0340 NC_010287.1 420042 421781 R decarboxylase complement(420042..421781) Chlamydia trachomatis 434/Bu 5858556 YP_001654425.1 CDS rpmB NC_010287.1 421901 422170 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(421901..422170) Chlamydia trachomatis 434/Bu 5858052 YP_001654426.1 CDS malQ NC_010287.1 422319 423902 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(422319..423902) Chlamydia trachomatis 434/Bu 5858076 YP_001654427.1 CDS scc1 NC_010287.1 423906 424346 R type III secretion chaperone complement(423906..424346) Chlamydia trachomatis 434/Bu 5858067 YP_001654428.1 CDS copN NC_010287.1 424384 425649 R low calcium response protein E complement(424384..425649) Chlamydia trachomatis 434/Bu 5858087 YP_001654429.1 CDS lcrD NC_010287.1 425667 427793 R low calcium response protein D complement(425667..427793) Chlamydia trachomatis 434/Bu 5858608 YP_001654430.1 CDS sctU NC_010287.1 427793 428875 R type III secretion system protein complement(427793..428875) Chlamydia trachomatis 434/Bu 5858605 YP_001654431.1 CDS CTL0347 NC_010287.1 429132 430232 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 429132..430232 Chlamydia trachomatis 434/Bu 5858027 YP_001654432.1 CDS ribF NC_010287.1 430241 431146 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(430241..431146) Chlamydia trachomatis 434/Bu 5858058 YP_001654433.1 CDS truB NC_010287.1 431103 431828 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(431103..431828) Chlamydia trachomatis 434/Bu 5858161 YP_001654434.1 CDS rbfA NC_010287.1 431866 432237 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(431866..432237) Chlamydia trachomatis 434/Bu 5858822 YP_001654435.1 CDS infB NC_010287.1 432244 434934 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(432244..434934) Chlamydia trachomatis 434/Bu 5858152 YP_001654436.1 CDS nusA NC_010287.1 434891 436195 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(434891..436195) Chlamydia trachomatis 434/Bu 5857991 YP_001654437.1 CDS rpsA NC_010287.1 436313 438022 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(436313..438022) Chlamydia trachomatis 434/Bu 5858770 YP_001654438.1 CDS trxB NC_010287.1 438267 439322 D thioredoxin reductase 438267..439322 Chlamydia trachomatis 434/Bu 5857977 YP_001654439.1 CDS acpS NC_010287.1 439328 439687 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 439328..439687 Chlamydia trachomatis 434/Bu 5858816 YP_001654440.1 CDS CTL0356 NC_010287.1 439688 440149 R hypothetical protein complement(439688..440149) Chlamydia trachomatis 434/Bu 5858616 YP_001654441.1 CDS CTL0357 NC_010287.1 440285 440746 D hypothetical protein 440285..440746 Chlamydia trachomatis 434/Bu 5858538 YP_001654442.1 CDS CTL0358 NC_010287.1 440781 441677 D Note the Pfam PF08282;haloacid dehalogenase-like hydrolase motif; hypothetical protein 440781..441677 Chlamydia trachomatis 434/Bu 5858587 YP_001654443.1 CDS fabI NC_010287.1 441667 442563 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(441667..442563) Chlamydia trachomatis 434/Bu 5858016 YP_001654444.1 CDS CTL0360 NC_010287.1 442875 444845 D hypothetical protein 442875..444845 Chlamydia trachomatis 434/Bu 5858716 YP_001654445.1 CDS CTL0361 NC_010287.1 445045 445869 R tRNA pseudouridine synthase A complement(445045..445869) Chlamydia trachomatis 434/Bu 5857948 YP_001654446.1 CDS CTL0362 NC_010287.1 445916 447022 D DNA glycosylase 445916..447022 Chlamydia trachomatis 434/Bu 5858135 YP_001654447.1 CDS CTL0363 NC_010287.1 447076 447831 D Note the Pfam PF01784, NIF3 (NGG1p interacting factor 3); hypothetical protein 447076..447831 Chlamydia trachomatis 434/Bu 5858014 YP_001654448.1 CDS CTL0364 NC_010287.1 447844 448632 R hypothetical protein complement(447844..448632) Chlamydia trachomatis 434/Bu 5858527 YP_001654449.1 CDS groEL NC_010287.1 448761 450395 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(448761..450395) Chlamydia trachomatis 434/Bu 5858059 YP_001654450.1 CDS groES NC_010287.1 450434 450742 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(450434..450742) Chlamydia trachomatis 434/Bu 5858801 YP_001654451.1 CDS pepF NC_010287.1 450914 452740 R oligoendopeptidase F complement(450914..452740) Chlamydia trachomatis 434/Bu 5858746 YP_001654452.1 CDS clpB NC_010287.1 453042 455645 D chaperone-protease ClpB 453042..455645 Chlamydia trachomatis 434/Bu 5858318 YP_001654453.1 CDS CTL0369 NC_010287.1 455671 457131 D hypothetical protein 455671..457131 Chlamydia trachomatis 434/Bu 5858663 YP_001654454.1 CDS incD NC_010287.1 457317 457799 D inclusion membrane protein D 457317..457799 Chlamydia trachomatis 434/Bu 5858590 YP_001654455.1 CDS incE NC_010287.1 457866 458264 D inclusion membrane protein E 457866..458264 Chlamydia trachomatis 434/Bu 5858183 YP_001654456.1 CDS incF NC_010287.1 458269 458583 D inclusion membrane protein F 458269..458583 Chlamydia trachomatis 434/Bu 5858025 YP_001654457.1 CDS incG NC_010287.1 458670 459173 D inclusion membrane protein G 458670..459173 Chlamydia trachomatis 434/Bu 5857996 YP_001654458.1 CDS incA NC_010287.1 459340 460080 R inclusion membrane protein A complement(459340..460080) Chlamydia trachomatis 434/Bu 5858137 YP_001654459.1 CDS CTL0375 NC_010287.1 460207 460482 R hypothetical protein complement(460207..460482) Chlamydia trachomatis 434/Bu 5858165 YP_001654460.1 CDS araD NC_010287.1 460581 461267 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 460581..461267 Chlamydia trachomatis 434/Bu 5858515 YP_001654461.1 CDS efp NC_010287.1 461254 461811 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 461254..461811 Chlamydia trachomatis 434/Bu 5858476 YP_001654462.1 CDS accB NC_010287.1 461824 462318 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 461824..462318 Chlamydia trachomatis 434/Bu 5858669 YP_001654463.1 CDS accC NC_010287.1 462322 463695 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 462322..463695 Chlamydia trachomatis 434/Bu 5858489 YP_001654464.1 CDS rplM NC_010287.1 463918 464370 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 463918..464370 Chlamydia trachomatis 434/Bu 5858611 YP_001654465.1 CDS rpsI NC_010287.1 464396 464785 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 464396..464785 Chlamydia trachomatis 434/Bu 5858125 YP_001654466.1 CDS CTL0382 NC_010287.1 464833 465684 R chitinase complement(464833..465684) Chlamydia trachomatis 434/Bu 5858011 YP_001654467.1 CDS adk NC_010287.1 465780 466517 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(465780..466517) Chlamydia trachomatis 434/Bu 5858151 YP_001654468.1 CDS CTL0384 NC_010287.1 466724 467368 D ABC transporter permease 466724..467368 Chlamydia trachomatis 434/Bu 5858477 YP_001654469.1 CDS CTL0385 NC_010287.1 467365 468066 D ABC transporter ATP-binding protein 467365..468066 Chlamydia trachomatis 434/Bu 5858184 YP_001654470.1 CDS CTL0386 NC_010287.1 468069 471485 R hypothetical protein complement(468069..471485) Chlamydia trachomatis 434/Bu 5858539 YP_001654471.1 CDS CTL0387 NC_010287.1 471482 472759 R Note the Pfam PF03631;Ribonuclease BN-like family; hypothetical protein complement(471482..472759) Chlamydia trachomatis 434/Bu 5858506 YP_001654472.1 CDS CTL0388 NC_010287.1 472838 473641 R methyltransferase complement(472838..473641) Chlamydia trachomatis 434/Bu 5858559 YP_001654473.1 CDS CTL0389 NC_010287.1 474097 474510 D hypothetical protein 474097..474510 Chlamydia trachomatis 434/Bu 5858533 YP_001654474.1 CDS CTL0390 NC_010287.1 474568 475650 D hypothetical protein 474568..475650 Chlamydia trachomatis 434/Bu 5858497 YP_001654475.1 CDS CTL0391 NC_010287.1 475740 476459 D members of this family of proteins have a broad spectrum of activity; phospholipase-carboxylesterase family protein 475740..476459 Chlamydia trachomatis 434/Bu 5858150 YP_001654476.1 CDS CTL0392 NC_010287.1 476478 477323 D note the PFAM motif to yrdC domain PF01300; hypothetical protein 476478..477323 Chlamydia trachomatis 434/Bu 5858536 YP_001654477.1 CDS CTL0393 NC_010287.1 477301 478248 D microsomal dipeptidase 477301..478248 Chlamydia trachomatis 434/Bu 5858129 YP_001654478.1 CDS oppA NC_010287.1 478245 479525 R oligopeptide transport system substrate-binding protein complement(478245..479525) Chlamydia trachomatis 434/Bu 5858522 YP_001654479.1 CDS CTL0395 NC_010287.1 479701 480387 D hypothetical protein 479701..480387 Chlamydia trachomatis 434/Bu 5858553 YP_001654480.1 CDS CTL0396 NC_010287.1 480571 481017 D protein translocase 480571..481017 Chlamydia trachomatis 434/Bu 5858435 YP_001654481.1 CDS CTL0397 NC_010287.1 481417 482274 D hypothetical protein 481417..482274 Chlamydia trachomatis 434/Bu 5858260 YP_001654482.1 CDS CTL0398 NC_010287.1 482276 483118 D hypothetical protein 482276..483118 Chlamydia trachomatis 434/Bu 5858718 YP_001654483.1 CDS CTL0399 NC_010287.1 483118 483984 D hypothetical protein 483118..483984 Chlamydia trachomatis 434/Bu 5858109 YP_001654484.1 CDS pkn1 NC_010287.1 484170 486014 D serine-threonine-protein kinase 484170..486014 Chlamydia trachomatis 434/Bu 5858117 YP_001654485.1 CDS ligA NC_010287.1 486025 488016 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 486025..488016 Chlamydia trachomatis 434/Bu 5857985 YP_001654486.1 CDS CTL0402 NC_010287.1 488114 492463 D integral membrane protein 488114..492463 Chlamydia trachomatis 434/Bu 5858451 YP_001654487.1 CDS mhpA NC_010287.1 492526 494049 R FAD-dependent monooxygenase complement(492526..494049) Chlamydia trachomatis 434/Bu 5858785 YP_001654488.1 CDS CTL0404 NC_010287.1 494249 495196 R hypothetical protein complement(494249..495196) Chlamydia trachomatis 434/Bu 5858574 YP_001654489.1 CDS rpmG NC_010287.1 495595 495753 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 495595..495753 Chlamydia trachomatis 434/Bu 5858561 YP_001654490.1 CDS CTL0406 NC_010287.1 495789 497300 D lipoprotein releasing systen inner membrane protein 495789..497300 Chlamydia trachomatis 434/Bu 5858540 YP_001654491.1 CDS CTL0407 NC_010287.1 497305 497982 D lipoprotein release ATP-binding protein 497305..497982 Chlamydia trachomatis 434/Bu 5858537 YP_001654492.1 CDS CTL0408 NC_010287.1 498133 500565 R MAC/perforin family protein complement(498133..500565) Chlamydia trachomatis 434/Bu 5857993 YP_001654493.1 CDS CTL0411 NC_010287.1 502302 503240 R phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein complement(502302..503240) Chlamydia trachomatis 434/Bu 5858073 YP_001654494.1 CDS CTL0413 NC_010287.1 503754 504959 R phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein complement(503754..504959) Chlamydia trachomatis 434/Bu 5858175 YP_008470962.1 CDS CTL0414a NC_010287.1 505082 505723 R phospholipase complement(505082..505723) Chlamydia trachomatis 434/Bu 16665134 YP_008470963.1 CDS CTL0417a NC_010287.1 506303 506584 R hypothetical protein complement(506303..506584) Chlamydia trachomatis 434/Bu 16665135 YP_008470964.1 CDS CTL0417b NC_010287.1 506843 507313 R hypothetical protein complement(506843..507313) Chlamydia trachomatis 434/Bu 5858414 YP_001654495.1 CDS CTL0417 NC_010287.1 507306 508052 R hypothetical protein complement(507306..508052) Chlamydia trachomatis 434/Bu 5858771 YP_001654496.1 CDS CTL0419 NC_010287.1 508663 510192 D Note the motifs for calcium binding and calmodulin-binding domain.; hypothetical protein 508663..510192 Chlamydia trachomatis 434/Bu 5858182 YP_001654498.1 CDS trpR NC_010287.1 511407 511691 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 511407..511691 Chlamydia trachomatis 434/Bu 5858190 YP_008470965.1 CDS CTL0422a NC_010287.1 511732 511911 D hypothetical protein 511732..511911 Chlamydia trachomatis 434/Bu 16665136 YP_001654499.1 CDS trpB NC_010287.1 512040 513218 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 512040..513218 Chlamydia trachomatis 434/Bu 5858806 YP_001654500.1 CDS trpA NC_010287.1 513211 513972 D tryptophan synthase subunit alpha 513211..513972 Chlamydia trachomatis 434/Bu 5858808 YP_001654502.2 CDS CTL0426 NC_010287.1 514761 515006 R hypothetical protein complement(514761..515006) Chlamydia trachomatis 434/Bu 5858700 YP_001654503.1 CDS oppA2 NC_010287.1 515293 516882 D oligopeptide transport system substrate-binding protein 515293..516882 Chlamydia trachomatis 434/Bu 5858503 YP_001654504.1 CDS dsbB NC_010287.1 516909 517316 R disulfide oxidoreductase complement(516909..517316) Chlamydia trachomatis 434/Bu 5858535 YP_001654505.1 CDS dsbG NC_010287.1 517313 518029 R Note the alternate possible translational start site at codon 27.; disulfide bond chaperone complement(517313..518029) Chlamydia trachomatis 434/Bu 5858475 YP_001654506.1 CDS CTL0430 NC_010287.1 518175 519389 D integral membrane protein 518175..519389 Chlamydia trachomatis 434/Bu 5858655 YP_001654507.2 CDS CTL0431 NC_010287.1 519391 520050 R hypothetical protein complement(519391..520050) Chlamydia trachomatis 434/Bu 5858456 YP_001654508.1 CDS CTL0432 NC_010287.1 520047 520739 R ABC transporter ATP-binding protein complement(520047..520739) Chlamydia trachomatis 434/Bu 5858552 YP_001654509.1 CDS CTL0433 NC_010287.1 521047 521757 R hypothetical protein complement(521047..521757) Chlamydia trachomatis 434/Bu 5857927 YP_001654510.1 CDS kdsB NC_010287.1 522125 522889 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 522125..522889 Chlamydia trachomatis 434/Bu 5858046 YP_001654511.1 CDS pyrG NC_010287.1 522865 524484 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 522865..524484 Chlamydia trachomatis 434/Bu 5858425 YP_001654512.1 CDS CTL0436 NC_010287.1 524471 524917 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 524471..524917 Chlamydia trachomatis 434/Bu 5858009 YP_001654513.1 CDS zwf NC_010287.1 525034 526557 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 525034..526557 Chlamydia trachomatis 434/Bu 5858195 YP_001654514.1 CDS devB NC_010287.1 526582 527352 D 6-phosphogluconolactonase 526582..527352 Chlamydia trachomatis 434/Bu 5857940 YP_001654515.1 CDS dnaX NC_010287.1 527349 528221 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(527349..528221) Chlamydia trachomatis 434/Bu 5858210 YP_001654516.1 CDS tmk NC_010287.1 528235 528846 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(528235..528846) Chlamydia trachomatis 434/Bu 5858199 YP_001654517.1 CDS gyrA NC_010287.1 528848 531358 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(528848..531358) Chlamydia trachomatis 434/Bu 5858742 YP_001654518.1 CDS gyrB NC_010287.1 531373 533787 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(531373..533787) Chlamydia trachomatis 434/Bu 5858149 YP_001654519.1 CDS CTL0443 NC_010287.1 533790 534140 R hypothetical protein complement(533790..534140) Chlamydia trachomatis 434/Bu 5858172 YP_001654520.1 CDS CTL0444 NC_010287.1 534287 534982 R carries characteristic twin membrane spanning domains; hypothetical protein complement(534287..534982) Chlamydia trachomatis 434/Bu 5858508 YP_001654521.1 CDS tgt NC_010287.1 535086 536204 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4, 5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7- deazaguanosine); queuine tRNA-ribosyltransferase complement(535086..536204) Chlamydia trachomatis 434/Bu 5858126 YP_001654522.1 CDS mgtE NC_010287.1 536331 537743 R magnesium transport protein complement(536331..537743) Chlamydia trachomatis 434/Bu 5858404 YP_001654523.1 CDS CTL0447 NC_010287.1 538183 539274 R integral membrane protein complement(538183..539274) Chlamydia trachomatis 434/Bu 5858198 YP_001654524.1 CDS CTL0448 NC_010287.1 539500 539820 D carries characteristic twin membrane spanning domains; hypothetical protein 539500..539820 Chlamydia trachomatis 434/Bu 5858114 YP_001654525.1 CDS gcp NC_010287.1 539896 540912 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 539896..540912 Chlamydia trachomatis 434/Bu 5858728 YP_001654526.1 CDS oppA3 NC_010287.1 540876 542432 D oligopeptide transport system substrate-binding protein 540876..542432 Chlamydia trachomatis 434/Bu 5858204 YP_001654527.1 CDS oppB NC_010287.1 542591 543532 D oligopeptide transport system membrane permease 542591..543532 Chlamydia trachomatis 434/Bu 5858443 YP_001654528.1 CDS oppC NC_010287.1 543564 544409 D oligopeptide transport system membrane permease 543564..544409 Chlamydia trachomatis 434/Bu 5858551 YP_001654529.1 CDS oppD NC_010287.1 544402 545235 D oligopeptide transport system ATP-binding protein 544402..545235 Chlamydia trachomatis 434/Bu 5858428 YP_001654530.1 CDS oppF NC_010287.1 545250 545993 D oligopeptide transport system ATP-binding protein 545250..545993 Chlamydia trachomatis 434/Bu 5858429 YP_001654531.1 CDS CTL0455 NC_010287.1 546305 547054 D hypothetical protein 546305..547054 Chlamydia trachomatis 434/Bu 5858072 YP_001654532.1 CDS CTL0456 NC_010287.1 547084 548499 D sodium:sulfate symporter 547084..548499 Chlamydia trachomatis 434/Bu 5858127 YP_001654533.1 CDS pfkA NC_010287.1 548519 550180 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 548519..550180 Chlamydia trachomatis 434/Bu 5858523 YP_001654534.1 CDS CTL0458 NC_010287.1 550189 551037 D hypothetical protein 550189..551037 Chlamydia trachomatis 434/Bu 5858657 YP_001654535.1 CDS pfkA_2 NC_010287.1 551019 552665 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 551019..552665 Chlamydia trachomatis 434/Bu 5858705 YP_001654536.1 CDS gseA NC_010287.1 552911 554206 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(552911..554206) Chlamydia trachomatis 434/Bu 5858288 YP_001654537.1 CDS leuS NC_010287.1 554203 556662 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(554203..556662) Chlamydia trachomatis 434/Bu 5858499 YP_001654538.1 CDS hemL NC_010287.1 556859 558127 D catalyzes the formation of 5-aminolevulinate from (S)-4-amino-5-oxopentanoate; glutamate-1-semialdehyde aminotransferase 556859..558127 Chlamydia trachomatis 434/Bu 5858804 YP_001654539.1 CDS CTL0463 NC_010287.1 558119 558688 R hypothetical protein complement(558119..558688) Chlamydia trachomatis 434/Bu 5858810 YP_001654540.1 CDS CTL0464 NC_010287.1 558708 559154 R hypothetical protein complement(558708..559154) Chlamydia trachomatis 434/Bu 5858168 YP_001654541.1 CDS rpiA NC_010287.1 559144 559872 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(559144..559872) Chlamydia trachomatis 434/Bu 5858696 YP_001654542.1 CDS CTL0466 NC_010287.1 559967 561610 R carries characteristic twin membrane spanning domains; hypothetical protein complement(559967..561610) Chlamydia trachomatis 434/Bu 5858153 YP_001654543.1 CDS dhnA NC_010287.1 561914 562960 D catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 561914..562960 Chlamydia trachomatis 434/Bu 5858146 YP_001654544.1 CDS xasA NC_010287.1 562974 564374 D glutamate/gamma-aminobutyrate antiporter 562974..564374 Chlamydia trachomatis 434/Bu 5858680 YP_001654545.1 CDS CTL0469 NC_010287.1 564468 565232 D hypothetical protein 564468..565232 Chlamydia trachomatis 434/Bu 5858815 YP_001654546.1 CDS surE NC_010287.1 565363 566214 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 565363..566214 Chlamydia trachomatis 434/Bu 5858766 YP_001654547.1 CDS ubiA NC_010287.1 566326 567234 D UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 566326..567234 Chlamydia trachomatis 434/Bu 5858327 YP_001654548.1 CDS CTL0472 NC_010287.1 567231 567809 D aromatic acid decarboxylase 567231..567809 Chlamydia trachomatis 434/Bu 5858821 YP_001654549.1 CDS CTL0473 NC_010287.1 567806 568702 R hypothetical protein complement(567806..568702) Chlamydia trachomatis 434/Bu 5858144 YP_001654550.1 CDS CTL0474 NC_010287.1 568992 569132 R hypothetical protein complement(568992..569132) Chlamydia trachomatis 434/Bu 5858820 YP_001654551.1 CDS CTL0475 NC_010287.1 569159 569545 R carries characteristic twin membrane spanning domains; hypothetical protein complement(569159..569545) Chlamydia trachomatis 434/Bu 5858542 YP_001654552.1 CDS CTL0476 NC_010287.1 569687 570493 R carries characteristic twin membrane spanning domains; hypothetical protein complement(569687..570493) Chlamydia trachomatis 434/Bu 5858723 YP_001654553.1 CDS CTL0477 NC_010287.1 570885 571328 R carries characteristic twin membrane spanning domains; hypothetical protein complement(570885..571328) Chlamydia trachomatis 434/Bu 5858164 YP_001654554.1 CDS CTL0477A NC_010287.1 571436 571804 R carries characteristic twin membrane spanning domains; hypothetical protein complement(571436..571804) Chlamydia trachomatis 434/Bu 5857945 YP_001654555.1 CDS CTL0478 NC_010287.1 571903 572418 R carries characteristic twin membrane spanning domains; hypothetical protein complement(571903..572418) Chlamydia trachomatis 434/Bu 5858000 YP_001654556.1 CDS CTL0479 NC_010287.1 572547 572948 R carries characteristic twin membrane spanning domains; hypothetical protein complement(572547..572948) Chlamydia trachomatis 434/Bu 5858589 YP_001654557.1 CDS CTL0480 NC_010287.1 573229 573819 R carries characteristic twin membrane spanning domains; hypothetical protein complement(573229..573819) Chlamydia trachomatis 434/Bu 5858580 YP_001654558.1 CDS CTL0481 NC_010287.1 573969 574616 R carries characteristic twin membrane spanning domains; hypothetical protein complement(573969..574616) Chlamydia trachomatis 434/Bu 5858598 YP_001654559.1 CDS CTL0482 NC_010287.1 574842 576089 D sodium:dicarboxylate symport protein 574842..576089 Chlamydia trachomatis 434/Bu 5858518 YP_001654560.1 CDS CTL0483 NC_010287.1 576273 577745 D sodium-dependent amino acid transporter 576273..577745 Chlamydia trachomatis 434/Bu 5858493 YP_001654561.1 CDS incB NC_010287.1 577850 578197 D inclusion membrane protein B 577850..578197 Chlamydia trachomatis 434/Bu 5858593 YP_001654562.1 CDS incC NC_010287.1 578274 578810 D inclusion membrane protein C 578274..578810 Chlamydia trachomatis 434/Bu 5858169 YP_001654563.1 CDS CTL0486 NC_010287.1 578868 581654 D membrane transport protein 578868..581654 Chlamydia trachomatis 434/Bu 5858147 YP_001654564.1 CDS CTL0487 NC_010287.1 581683 582096 D Crp family transcriptional regulator 581683..582096 Chlamydia trachomatis 434/Bu 5858180 YP_001654565.1 CDS acpP NC_010287.1 582157 582390 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(582157..582390) Chlamydia trachomatis 434/Bu 5858080 YP_001654566.1 CDS fabG NC_010287.1 582759 583505 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(582759..583505) Chlamydia trachomatis 434/Bu 5858646 YP_001654567.1 CDS fabD NC_010287.1 583502 584428 R malonyl-CoA-[acyl-carrier-protein] transacylase complement(583502..584428) Chlamydia trachomatis 434/Bu 5858671 YP_001654568.1 CDS fabH NC_010287.1 584445 585428 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(584445..585428) Chlamydia trachomatis 434/Bu 5857957 YP_001654569.1 CDS recR NC_010287.1 585566 586168 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 585566..586168 Chlamydia trachomatis 434/Bu 5857953 YP_001654570.1 CDS CTL0493 NC_010287.1 586542 588920 D outer membrane protein 586542..588920 Chlamydia trachomatis 434/Bu 5858510 YP_001654571.1 CDS ompH NC_010287.1 588987 589508 D outer membrane protein 588987..589508 Chlamydia trachomatis 434/Bu 5858513 YP_001654572.1 CDS lpxD NC_010287.1 589536 590600 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 589536..590600 Chlamydia trachomatis 434/Bu 5858495 YP_001654573.1 CDS CTL0496 NC_010287.1 590597 591793 R hypothetical protein complement(590597..591793) Chlamydia trachomatis 434/Bu 5858758 YP_001654574.1 CDS pdhA NC_010287.1 592015 593037 D pyruvate dehydrogenase E1 component subunit alpha 592015..593037 Chlamydia trachomatis 434/Bu 5858040 YP_001654575.1 CDS pdhB NC_010287.1 593030 594016 D pyruvate dehydrogenase E1 component subunit beta 593030..594016 Chlamydia trachomatis 434/Bu 5858662 YP_001654576.1 CDS pdhC NC_010287.1 594021 595310 D branched-chain alpha-keto acid dehydrogenase subunit E2 594021..595310 Chlamydia trachomatis 434/Bu 5858441 YP_001654577.1 CDS glgP NC_010287.1 595337 597781 R glycogen phosphorylase complement(595337..597781) Chlamydia trachomatis 434/Bu 5858737 YP_001654578.1 CDS CTL0500A NC_010287.1 597937 598287 D hypothetical protein 597937..598287 Chlamydia trachomatis 434/Bu 5858684 YP_001654579.1 CDS dnaA NC_010287.1 598341 599711 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(598341..599711) Chlamydia trachomatis 434/Bu 5858599 YP_001654580.1 CDS oxaA NC_010287.1 599788 602151 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(599788..602151) Chlamydia trachomatis 434/Bu 5858197 YP_001654581.1 CDS lgt NC_010287.1 602461 603279 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(602461..603279) Chlamydia trachomatis 434/Bu 5858446 YP_001654582.1 CDS CTL0505 NC_010287.1 603530 604177 D lipoprotein 603530..604177 Chlamydia trachomatis 434/Bu 5858316 YP_001654583.1 CDS CTL0506 NC_010287.1 604181 604951 D inner membrane protein 604181..604951 Chlamydia trachomatis 434/Bu 5858698 YP_001654584.1 CDS CTL0507 NC_010287.1 605159 605542 R hypothetical protein complement(605159..605542) Chlamydia trachomatis 434/Bu 5858603 YP_001654585.1 CDS CTL0508 NC_010287.1 605731 606975 D membrane transport protein 605731..606975 Chlamydia trachomatis 434/Bu 5858086 YP_001654586.1 CDS CTL0509 NC_010287.1 606965 608179 D hypothetical protein 606965..608179 Chlamydia trachomatis 434/Bu 5858416 YP_001654587.1 CDS CTL0510 NC_010287.1 608183 609307 R cysteine desulfurase complement(608183..609307) Chlamydia trachomatis 434/Bu 5858396 YP_001654588.1 CDS CTL0511 NC_010287.1 609313 610059 R protein phosphatase 2C complement(609313..610059) Chlamydia trachomatis 434/Bu 5858252 YP_001654589.1 CDS CTL0512 NC_010287.1 610378 610869 D hypothetical protein 610378..610869 Chlamydia trachomatis 434/Bu 5858282 YP_001654590.1 CDS dnaQ NC_010287.1 610878 611576 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 610878..611576 Chlamydia trachomatis 434/Bu 5857933 YP_001654591.1 CDS CTL0514 NC_010287.1 611573 612343 D hypothetical protein 611573..612343 Chlamydia trachomatis 434/Bu 5858787 YP_001654592.1 CDS CTL0515 NC_010287.1 612336 612926 D hypothetical protein 612336..612926 Chlamydia trachomatis 434/Bu 5858341 YP_001654593.1 CDS CTL0516 NC_010287.1 612947 614887 R ABC transporter ATP-binding protein/permease complement(612947..614887) Chlamydia trachomatis 434/Bu 5858391 YP_001654594.1 CDS accA NC_010287.1 614853 615827 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(614853..615827) Chlamydia trachomatis 434/Bu 5858233 YP_001654595.1 CDS CTL0518 NC_010287.1 615960 617141 R hypothetical protein complement(615960..617141) Chlamydia trachomatis 434/Bu 5858041 YP_001654596.1 CDS ihfA NC_010287.1 617259 617561 R integration host factor subunit alpha complement(617259..617561) Chlamydia trachomatis 434/Bu 5858371 YP_001654597.1 CDS amiA NC_010287.1 617781 618560 R N-acetylmuramoyl alanine amidase complement(617781..618560) Chlamydia trachomatis 434/Bu 5858427 YP_001654598.1 CDS murE NC_010287.1 618475 619926 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(618475..619926) Chlamydia trachomatis 434/Bu 5858472 YP_001654599.1 CDS pbp NC_010287.1 620249 622192 R penicillin-binding protein complement(620249..622192) Chlamydia trachomatis 434/Bu 5858504 YP_001654600.1 CDS CTL0523 NC_010287.1 622179 622466 R hypothetical protein complement(622179..622466) Chlamydia trachomatis 434/Bu 5858686 YP_001654601.1 CDS mraW NC_010287.1 622466 623368 R S-adenosyl-methyltransferase MraW complement(622466..623368) Chlamydia trachomatis 434/Bu 5857921 YP_001654602.1 CDS CTL0525 NC_010287.1 623646 624212 D hypothetical protein 623646..624212 Chlamydia trachomatis 434/Bu 5858465 YP_001654603.1 CDS CTL0526 NC_010287.1 624219 624638 D hypothetical protein 624219..624638 Chlamydia trachomatis 434/Bu 5858415 YP_001654604.1 CDS dnaA NC_010287.1 624880 626247 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 624880..626247 Chlamydia trachomatis 434/Bu 5857906 YP_001654605.1 CDS CTL0528 NC_010287.1 626299 626883 D hypothetical protein 626299..626883 Chlamydia trachomatis 434/Bu 5858196 YP_001654606.1 CDS CTL0529 NC_010287.1 626855 627514 R hypothetical protein complement(626855..627514) Chlamydia trachomatis 434/Bu 5858326 YP_001654607.1 CDS nqrB NC_010287.1 627516 629027 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 627516..629027 Chlamydia trachomatis 434/Bu 5858399 YP_001654608.1 CDS nqrC NC_010287.1 629031 629981 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 629031..629981 Chlamydia trachomatis 434/Bu 5858579 YP_001654609.1 CDS nqrD NC_010287.1 629971 630612 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 629971..630612 Chlamydia trachomatis 434/Bu 5858774 YP_001654610.1 CDS nqrE NC_010287.1 630618 631352 D Na(+)-translocating NADH-quinone reductase subunit E 630618..631352 Chlamydia trachomatis 434/Bu 5858458 YP_001654611.1 CDS gcsH NC_010287.1 631376 631729 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(631376..631729) Chlamydia trachomatis 434/Bu 5858483 YP_001654612.1 CDS CTL0535 NC_010287.1 631749 633821 R hypothetical protein complement(631749..633821) Chlamydia trachomatis 434/Bu 5858032 YP_001654613.1 CDS CTL0536 NC_010287.1 634016 635440 R phospholipase D complement(634016..635440) Chlamydia trachomatis 434/Bu 5858255 YP_001654614.1 CDS lplA NC_010287.1 635446 636165 R lipoate-protein ligase A complement(635446..636165) Chlamydia trachomatis 434/Bu 5858339 YP_001654615.1 CDS clpC NC_010287.1 636430 638994 D ATP-dependent Clp protease 636430..638994 Chlamydia trachomatis 434/Bu 5858192 YP_001654616.1 CDS mnmA NC_010287.1 638975 640051 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(638975..640051) Chlamydia trachomatis 434/Bu 5858654 YP_001654617.1 CDS CTL0540 NC_010287.1 640283 641977 D carries characteristic twin membrane spanning domains; hypothetical protein 640283..641977 Chlamydia trachomatis 434/Bu 5858413 YP_001654618.1 CDS CTL0541 NC_010287.1 642064 643209 R hypothetical protein complement(642064..643209) Chlamydia trachomatis 434/Bu 5858253 YP_001654619.1 CDS CTL0542 NC_010287.1 643267 643944 R PTS system transporter subunit IIA complement(643267..643944) Chlamydia trachomatis 434/Bu 5858245 YP_001654620.1 CDS ptsN_2 NC_010287.1 643947 644423 R PTS system transporter subunit IIA complement(643947..644423) Chlamydia trachomatis 434/Bu 5858364 YP_001654621.1 CDS dut NC_010287.1 644425 644862 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(644425..644862) Chlamydia trachomatis 434/Bu 5858750 YP_001654622.1 CDS accD NC_010287.1 644899 645825 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(644899..645825) Chlamydia trachomatis 434/Bu 5857955 YP_001654623.1 CDS sodM NC_010287.1 645896 646516 R superoxide dismutase complement(645896..646516) Chlamydia trachomatis 434/Bu 5858610 YP_001654624.1 CDS mrsA NC_010287.1 646648 648429 R phosphoglucomutase complement(646648..648429) Chlamydia trachomatis 434/Bu 5858460 YP_001654625.1 CDS CTL0548 NC_010287.1 648581 649048 R hypothetical protein complement(648581..649048) Chlamydia trachomatis 434/Bu 5858586 YP_001654626.1 CDS rnc NC_010287.1 649157 649852 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 649157..649852 Chlamydia trachomatis 434/Bu 5858279 YP_001654627.1 CDS radA NC_010287.1 649836 651200 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 649836..651200 Chlamydia trachomatis 434/Bu 5858120 YP_001654628.1 CDS hemC NC_010287.1 651244 651903 D transformation of prophobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 651244..651903 Chlamydia trachomatis 434/Bu 5858139 YP_001654629.1 CDS pknD NC_010287.1 652698 655502 R PknD; responsible for phosphorylation of proteins on serine and threonine residues; similar to eukaryotic Ser/Thr kinases; in Chlamydia trachomatis itseems to interact with Pkn1, another serine/threonine-protein kinase; serine/threonine-protein kinase complement(652698..655502) Chlamydia trachomatis 434/Bu 5857923 YP_001654630.1 CDS valS NC_010287.1 655517 658336 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(655517..658336) Chlamydia trachomatis 434/Bu 5858711 YP_001654631.1 CDS CTL0555 NC_010287.1 658463 658978 R hypothetical protein complement(658463..658978) Chlamydia trachomatis 434/Bu 5858805 YP_001654632.1 CDS atpK NC_010287.1 658899 659324 R produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K complement(658899..659324) Chlamydia trachomatis 434/Bu 5857935 YP_001654633.1 CDS atpI NC_010287.1 659386 661335 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I complement(659386..661335) Chlamydia trachomatis 434/Bu 5858641 YP_001654634.1 CDS atpD NC_010287.1 661341 661952 R produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D complement(661341..661952) Chlamydia trachomatis 434/Bu 5858484 YP_001654635.1 CDS atpB NC_010287.1 661937 663253 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(661937..663253) Chlamydia trachomatis 434/Bu 5858469 YP_001654636.1 CDS atpA NC_010287.1 663256 665031 R produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A complement(663256..665031) Chlamydia trachomatis 434/Bu 5858487 YP_001654637.1 CDS CTL0561 NC_010287.1 665025 665825 R hypothetical protein complement(665025..665825) Chlamydia trachomatis 434/Bu 5858609 YP_001654638.1 CDS atpE NC_010287.1 665992 666618 R produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit E complement(665992..666618) Chlamydia trachomatis 434/Bu 5857920 YP_001654639.1 CDS CTL0563 NC_010287.1 666727 667437 D hypothetical protein 666727..667437 Chlamydia trachomatis 434/Bu 5858474 YP_001654640.1 CDS CTL0564 NC_010287.1 667445 667816 R hypothetical protein complement(667445..667816) Chlamydia trachomatis 434/Bu 5858293 YP_001654641.1 CDS tal NC_010287.1 667861 668844 R transaldolase B complement(667861..668844) Chlamydia trachomatis 434/Bu 5857936 YP_001654642.1 CDS rpoC NC_010287.1 668956 673146 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(668956..673146) Chlamydia trachomatis 434/Bu 5858218 YP_001654643.1 CDS rpoB NC_010287.1 673171 676929 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(673171..676929) Chlamydia trachomatis 434/Bu 5858141 YP_001654644.1 CDS rplL NC_010287.1 677290 677682 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(677290..677682) Chlamydia trachomatis 434/Bu 5858736 YP_001654645.1 CDS rplJ NC_010287.1 677714 678232 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(677714..678232) Chlamydia trachomatis 434/Bu 5858604 YP_001654646.1 CDS rplA NC_010287.1 678254 678952 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(678254..678952) Chlamydia trachomatis 434/Bu 5858670 YP_001654647.1 CDS rplK NC_010287.1 678975 679400 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(678975..679400) Chlamydia trachomatis 434/Bu 5858530 YP_001654648.1 CDS nusG NC_010287.1 679506 680054 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(679506..680054) Chlamydia trachomatis 434/Bu 5858741 YP_001654649.1 CDS secE NC_010287.1 680058 680306 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(680058..680306) Chlamydia trachomatis 434/Bu 5858101 YP_001654650.1 CDS tufA NC_010287.1 680449 681633 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(680449..681633) Chlamydia trachomatis 434/Bu 5858263 YP_001654651.1 CDS infA NC_010287.1 681981 682202 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(681981..682202) Chlamydia trachomatis 434/Bu 5858264 YP_001654652.1 CDS CTL0576 NC_010287.1 682615 683526 D hypothetical protein 682615..683526 Chlamydia trachomatis 434/Bu 5858717 YP_001654653.1 CDS CTL0577 NC_010287.1 683523 683969 D hypothetical protein 683523..683969 Chlamydia trachomatis 434/Bu 5858294 YP_001654654.1 CDS CTL0580 NC_010287.1 686181 686363 R hypothetical protein complement(686181..686363) Chlamydia trachomatis 434/Bu 5857915 YP_001654655.1 CDS trpC NC_010287.1 687086 687712 R catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase complement(687086..687712) Chlamydia trachomatis 434/Bu 5858290 YP_001654656.1 CDS tpiA NC_010287.1 687908 688732 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 687908..688732 Chlamydia trachomatis 434/Bu 5858807 YP_001654657.1 CDS xseA NC_010287.1 688746 690296 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 688746..690296 Chlamydia trachomatis 434/Bu 5858359 YP_001654658.1 CDS xseB NC_010287.1 690280 690498 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 690280..690498 Chlamydia trachomatis 434/Bu 5858834 YP_001654659.1 CDS CTL0584 NC_010287.1 690505 690777 D hypothetical protein 690505..690777 Chlamydia trachomatis 434/Bu 5858803 YP_001654660.1 CDS dxs NC_010287.1 690774 692696 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 690774..692696 Chlamydia trachomatis 434/Bu 5858397 YP_001654661.1 CDS pykF NC_010287.1 692793 694250 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 692793..694250 Chlamydia trachomatis 434/Bu 5857956 YP_001654662.1 CDS uvrA NC_010287.1 694273 699633 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 694273..699633 Chlamydia trachomatis 434/Bu 5858569 YP_001654663.1 CDS dnaX NC_010287.1 699851 701251 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 699851..701251 Chlamydia trachomatis 434/Bu 5858828 YP_001654664.1 CDS CTL0589 NC_010287.1 701244 701534 D hypothetical protein 701244..701534 Chlamydia trachomatis 434/Bu 5858113 YP_001654665.1 CDS ptsI NC_010287.1 701544 703259 R phosphoenolpyruvate-protein phosphotransferase complement(701544..703259) Chlamydia trachomatis 434/Bu 5857919 YP_001654666.1 CDS ptsH NC_010287.1 703259 703588 R phosphocarrier protein HPr complement(703259..703588) Chlamydia trachomatis 434/Bu 5858721 YP_001654667.1 CDS CTL0592 NC_010287.1 703726 704187 R hypothetical protein complement(703726..704187) Chlamydia trachomatis 434/Bu 5858679 YP_001654669.1 CDS CTL0593 NC_010287.1 704471 706000 D hypothetical protein 704471..706000 Chlamydia trachomatis 434/Bu 5858402 YP_001654670.1 CDS CTL0594 NC_010287.1 706072 708108 R 2-oxoisovalerate dehydrogenase subunit alpha complement(706072..708108) Chlamydia trachomatis 434/Bu 5858223 YP_001654671.1 CDS dnaJ NC_010287.1 708143 709321 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(708143..709321) Chlamydia trachomatis 434/Bu 5858338 YP_001654672.1 CDS rpsU NC_010287.1 709350 709526 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(709350..709526) Chlamydia trachomatis 434/Bu 5858534 YP_001654673.1 CDS CTL0597 NC_010287.1 709724 710356 R O-sialoglycoprotein endopeptidase complement(709724..710356) Chlamydia trachomatis 434/Bu 5857978 YP_001654674.1 CDS lon NC_010287.1 710666 713125 D ATP-dependent protease La 710666..713125 Chlamydia trachomatis 434/Bu 5858232 YP_001654675.1 CDS CTL0599 NC_010287.1 713227 713592 D hypothetical protein 713227..713592 Chlamydia trachomatis 434/Bu 5858097 YP_001654676.1 CDS CTL0600 NC_010287.1 713935 714849 D member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 713935..714849 Chlamydia trachomatis 434/Bu 5858302 YP_001654677.1 CDS xerC NC_010287.1 714911 715858 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 714911..715858 Chlamydia trachomatis 434/Bu 5858132 YP_001654678.1 CDS CTL0602 NC_010287.1 715912 717501 D ABC transporter ATP-binding protein 715912..717501 Chlamydia trachomatis 434/Bu 5857939 YP_001654679.1 CDS CTL0603 NC_010287.1 717537 718127 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 717537..718127 Chlamydia trachomatis 434/Bu 5857929 YP_001654680.1 CDS CTL0604 NC_010287.1 718109 719809 D lipoprotein 718109..719809 Chlamydia trachomatis 434/Bu 5858295 YP_001654681.1 CDS CTL0605 NC_010287.1 719816 721918 D hypothetical protein 719816..721918 Chlamydia trachomatis 434/Bu 5858366 YP_001654682.1 CDS secG NC_010287.1 721992 722300 R preprotein translocase subunit SecG complement(721992..722300) Chlamydia trachomatis 434/Bu 5858231 YP_001654683.1 CDS def NC_010287.1 722456 723001 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(722456..723001) Chlamydia trachomatis 434/Bu 5858262 YP_001654684.1 CDS ksgA NC_010287.1 723276 724109 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(723276..724109) Chlamydia trachomatis 434/Bu 5858688 YP_001654685.1 CDS CTL0609 NC_010287.1 724125 725186 R hypothetical protein complement(724125..725186) Chlamydia trachomatis 434/Bu 5858094 YP_001654686.1 CDS CTL0610 NC_010287.1 725491 727605 R hypothetical protein complement(725491..727605) Chlamydia trachomatis 434/Bu 5858408 YP_001654687.1 CDS CTL0611A NC_010287.1 728062 728394 D carries characteristic twin membrane spanning domains; hypothetical protein 728062..728394 Chlamydia trachomatis 434/Bu 5858273 YP_008470966.1 CDS CTL0612 NC_010287.1 728420 728932 D membrane protein 728420..728932 Chlamydia trachomatis 434/Bu 5857913 YP_001654688.1 CDS CTL0613 NC_010287.1 729014 729604 R inner membrane protein complement(729014..729604) Chlamydia trachomatis 434/Bu 5858360 YP_001654689.1 CDS CTL0614 NC_010287.1 729856 730482 R hypothetical protein complement(729856..730482) Chlamydia trachomatis 434/Bu 5858261 YP_001654690.1 CDS dapA NC_010287.1 730644 731504 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(730644..731504) Chlamydia trachomatis 434/Bu 5858751 YP_001654691.1 CDS lysC NC_010287.1 731514 732809 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase complement(731514..732809) Chlamydia trachomatis 434/Bu 5858118 YP_001654692.1 CDS asd NC_010287.1 732802 733806 R catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase complement(732802..733806) Chlamydia trachomatis 434/Bu 5858738 YP_001654693.1 CDS dapB NC_010287.1 733816 734577 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(733816..734577) Chlamydia trachomatis 434/Bu 5858481 YP_001654694.1 CDS CTL0619 NC_010287.1 734754 736481 R integral membrane protein complement(734754..736481) Chlamydia trachomatis 434/Bu 5858074 YP_001654695.1 CDS aroA NC_010287.1 736651 737973 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 736651..737973 Chlamydia trachomatis 434/Bu 5858438 YP_001654696.1 CDS aroL NC_010287.1 737915 738469 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 737915..738469 Chlamydia trachomatis 434/Bu 5858488 YP_001654697.1 CDS aroC NC_010287.1 738462 739535 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 738462..739535 Chlamydia trachomatis 434/Bu 5858480 YP_001654698.1 CDS aroB NC_010287.1 739532 740653 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 739532..740653 Chlamydia trachomatis 434/Bu 5858466 YP_001654699.1 CDS aroDE NC_010287.1 740634 742076 D AroDE; bifunctional enzyme; can convert 3-dehydroquinate to 3-dehydroshkimate and then to shikimate; involved in the synthesis of aromatic amino acids and other metabolites; type I 3-DHQase; bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein 740634..742076 Chlamydia trachomatis 434/Bu 5858629 YP_001654700.1 CDS CTL0625 NC_010287.1 742118 742903 D hypothetical protein 742118..742903 Chlamydia trachomatis 434/Bu 5858666 YP_001654701.1 CDS CTL0626 NC_010287.1 743044 744372 D hypothetical protein 743044..744372 Chlamydia trachomatis 434/Bu 5858286 YP_001654702.1 CDS CTL0628 NC_010287.1 745044 746495 D arginine/ornithine antiporter 745044..746495 Chlamydia trachomatis 434/Bu 5858403 YP_001654703.1 CDS CTL0629 NC_010287.1 746667 747725 D oxidoreductase 746667..747725 Chlamydia trachomatis 434/Bu 5858352 YP_001654704.1 CDS mdhC NC_010287.1 747767 748747 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(747767..748747) Chlamydia trachomatis 434/Bu 5858419 YP_001654705.1 CDS ltuA NC_010287.1 748937 749077 R late transcription unit A protein complement(748937..749077) Chlamydia trachomatis 434/Bu 5858450 YP_001654706.1 CDS pgi NC_010287.1 749192 750769 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(749192..750769) Chlamydia trachomatis 434/Bu 5858722 YP_001654707.1 CDS CTL0634 NC_010287.1 750882 752225 R nucleotide-binding protein complement(750882..752225) Chlamydia trachomatis 434/Bu 5858597 YP_001654708.1 CDS phnP NC_010287.1 752238 753038 R metal-dependent hydrolase complement(752238..753038) Chlamydia trachomatis 434/Bu 5858384 YP_001654709.1 CDS artJ NC_010287.1 753067 753840 R arginine transport substrate-binding protein complement(753067..753840) Chlamydia trachomatis 434/Bu 5858448 YP_001654710.1 CDS aroG NC_010287.1 753909 754745 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase complement(753909..754745) Chlamydia trachomatis 434/Bu 5858039 YP_001654711.1 CDS CTL0638 NC_010287.1 754882 755073 R hypothetical protein complement(754882..755073) Chlamydia trachomatis 434/Bu 5858028 YP_001654712.1 CDS CTL0639 NC_010287.1 755256 755987 D hypothetical protein 755256..755987 Chlamydia trachomatis 434/Bu 5858257 YP_001654713.1 CDS CTL0640 NC_010287.1 755998 757617 R hypothetical protein complement(755998..757617) Chlamydia trachomatis 434/Bu 5858251 YP_001654714.1 CDS CTL0641 NC_010287.1 757632 757967 R hypothetical protein complement(757632..757967) Chlamydia trachomatis 434/Bu 5858401 YP_001654715.1 CDS CTL0642 NC_010287.1 757964 758833 R hypothetical protein complement(757964..758833) Chlamydia trachomatis 434/Bu 5858240 YP_001654716.1 CDS CTL0643 NC_010287.1 759120 761195 D hypothetical protein 759120..761195 Chlamydia trachomatis 434/Bu 5858228 YP_001654717.1 CDS CTL0644 NC_010287.1 761209 761556 R hypothetical protein complement(761209..761556) Chlamydia trachomatis 434/Bu 5858370 YP_001654718.1 CDS CTL0645 NC_010287.1 761738 762964 D hypothetical protein 761738..762964 Chlamydia trachomatis 434/Bu 5858234 YP_001654719.1 CDS dapL NC_010287.1 763072 764256 D catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase 763072..764256 Chlamydia trachomatis 434/Bu 5858236 YP_001654720.1 CDS CTL0647 NC_010287.1 764264 765271 D ABC transporter substrate-binding protein 764264..765271 Chlamydia trachomatis 434/Bu 5858682 YP_001654721.1 CDS CTL0648 NC_010287.1 765280 766410 R hypothetical protein complement(765280..766410) Chlamydia trachomatis 434/Bu 5858283 YP_001654722.1 CDS proS NC_010287.1 766611 768356 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 766611..768356 Chlamydia trachomatis 434/Bu 5858382 YP_001654723.1 CDS hrcA NC_010287.1 768425 769603 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 768425..769603 Chlamydia trachomatis 434/Bu 5858140 YP_001654724.1 CDS grpE NC_010287.1 769600 770172 D HSP-70 cofactor 769600..770172 Chlamydia trachomatis 434/Bu 5858410 YP_001654725.1 CDS dnaK NC_010287.1 770198 772180 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 770198..772180 Chlamydia trachomatis 434/Bu 5858788 YP_001654726.1 CDS vacB NC_010287.1 772473 774557 D exoribonuclease II 772473..774557 Chlamydia trachomatis 434/Bu 5858673 YP_001654727.1 CDS CTL0655 NC_010287.1 774813 775577 D hypothetical protein 774813..775577 Chlamydia trachomatis 434/Bu 5858827 YP_001654728.1 CDS CTL0656 NC_010287.1 776000 776986 R carbohydrate isomerase complement(776000..776986) Chlamydia trachomatis 434/Bu 5858392 YP_001654729.1 CDS sucB NC_010287.1 777018 778184 R branched-chain alpha-keto acid dehydrogenase subunit E2 complement(777018..778184) Chlamydia trachomatis 434/Bu 5857914 YP_001654730.1 CDS gltT NC_010287.1 778430 779668 R Sodium:dicarboxylate symport protein complement(778430..779668) Chlamydia trachomatis 434/Bu 5858315 YP_001654731.1 CDS lpxK NC_010287.1 779665 780774 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(779665..780774) Chlamydia trachomatis 434/Bu 5858201 YP_001654732.1 CDS CTL0660 NC_010287.1 780940 781749 R 23S rRNA methyltransferase complement(780940..781749) Chlamydia trachomatis 434/Bu 5858244 YP_001654733.1 CDS CTL0661 NC_010287.1 781737 782564 R N6-adenine-specific DNA methylase complement(781737..782564) Chlamydia trachomatis 434/Bu 5858287 YP_001654734.1 CDS ribC NC_010287.1 782561 783160 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(782561..783160) Chlamydia trachomatis 434/Bu 5857934 YP_001654735.1 CDS nrdR NC_010287.1 783553 784017 D transcriptional regulator NrdR 783553..784017 Chlamydia trachomatis 434/Bu 5858672 YP_001654736.1 CDS dksA NC_010287.1 784031 784405 D dnaK suppressor protein 784031..784405 Chlamydia trachomatis 434/Bu 5858340 YP_001654737.1 CDS lspA NC_010287.1 784411 784914 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 784411..784914 Chlamydia trachomatis 434/Bu 5858209 YP_001654738.1 CDS CTL0666 NC_010287.1 785016 786377 D Sodium/alanine symporter protein 785016..786377 Chlamydia trachomatis 434/Bu 5858699 YP_001654739.1 CDS pcnB NC_010287.1 786593 787870 D poly A polymerase 786593..787870 Chlamydia trachomatis 434/Bu 5858266 YP_001654740.1 CDS lpxB NC_010287.1 787931 789754 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate; lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 787931..789754 Chlamydia trachomatis 434/Bu 5858639 YP_001654741.1 CDS pmpA NC_010287.1 789861 792788 D polymorphic outer membrane protein 789861..792788 Chlamydia trachomatis 434/Bu 5858107 YP_001654742.1 CDS pmpB NC_010287.1 792927 798176 D polymorphic outer membrane protein 792927..798176 Chlamydia trachomatis 434/Bu 5858502 YP_001654743.1 CDS pmpC NC_010287.1 798351 803675 D polymorphic outer membrane protein 798351..803675 Chlamydia trachomatis 434/Bu 5858099 YP_001654744.1 CDS CTL0672 NC_010287.1 804228 805058 D metal ABC transporter substrate-binding protein 804228..805058 Chlamydia trachomatis 434/Bu 5858272 YP_001654745.1 CDS CTL0673 NC_010287.1 805055 805765 D metal ABC transporter ATP-binding protein 805055..805765 Chlamydia trachomatis 434/Bu 5858376 YP_001654746.1 CDS CTL0674 NC_010287.1 805756 806637 D metal ABC transporter membrane permease 805756..806637 Chlamydia trachomatis 434/Bu 5858239 YP_001654747.1 CDS obgE NC_010287.1 806553 807560 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(806553..807560) Chlamydia trachomatis 434/Bu 5857930 YP_001654748.1 CDS rpmA NC_010287.1 807650 807901 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(807650..807901) Chlamydia trachomatis 434/Bu 5858329 YP_001654749.1 CDS rplU NC_010287.1 807932 808255 R 50S ribosomal protein L21 complement(807932..808255) Chlamydia trachomatis 434/Bu 5858312 YP_001654750.1 CDS CTL0678 NC_010287.1 808805 809506 D inner membrane protein 808805..809506 Chlamydia trachomatis 434/Bu 5858284 YP_001654751.1 CDS CTL0679 NC_010287.1 809691 809852 D hypothetical protein 809691..809852 Chlamydia trachomatis 434/Bu 5858385 YP_001654752.1 CDS CTL0680 NC_010287.1 809869 810030 D hypothetical protein 809869..810030 Chlamydia trachomatis 434/Bu 5858242 YP_001654753.1 CDS CTL0681 NC_010287.1 810043 810528 D hypothetical protein 810043..810528 Chlamydia trachomatis 434/Bu 5858411 YP_001654754.1 CDS CTL0682 NC_010287.1 810661 811770 D cation efflux protein 810661..811770 Chlamydia trachomatis 434/Bu 5857922 YP_001654755.1 CDS rsbV NC_010287.1 811959 812309 D anti-sigma F factor antagonist 811959..812309 Chlamydia trachomatis 434/Bu 5858395 YP_001654756.1 CDS CTL0684 NC_010287.1 812487 814352 D hypothetical protein 812487..814352 Chlamydia trachomatis 434/Bu 5858733 YP_001654757.1 CDS CTL0685 NC_010287.1 814549 815658 D hypothetical protein 814549..815658 Chlamydia trachomatis 434/Bu 5858386 YP_001654758.1 CDS CTL0686 NC_010287.1 815631 816452 D hypothetical protein 815631..816452 Chlamydia trachomatis 434/Bu 5858368 YP_001654759.1 CDS ubiE NC_010287.1 816388 817077 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 816388..817077 Chlamydia trachomatis 434/Bu 5858221 YP_001654760.1 CDS CTL0688 NC_010287.1 817103 818092 R hypothetical protein complement(817103..818092) Chlamydia trachomatis 434/Bu 5858831 YP_001654761.1 CDS dapF NC_010287.1 818153 818980 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(818153..818980) Chlamydia trachomatis 434/Bu 5858387 YP_001654762.1 CDS clpP NC_010287.1 818949 819527 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(818949..819527) Chlamydia trachomatis 434/Bu 5858690 YP_001654763.1 CDS glyA NC_010287.1 819539 821032 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(819539..821032) Chlamydia trachomatis 434/Bu 5858124 YP_001654764.1 CDS hemD NC_010287.1 821396 822067 D catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 821396..822067 Chlamydia trachomatis 434/Bu 5858617 YP_001654765.1 CDS ispF NC_010287.1 822170 822706 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 822170..822706 Chlamydia trachomatis 434/Bu 5858357 YP_001654766.1 CDS CTL0694 NC_010287.1 822703 823755 R oxidoreductase complement(822703..823755) Chlamydia trachomatis 434/Bu 5858356 YP_001654767.1 CDS rpsJ NC_010287.1 823772 824089 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(823772..824089) Chlamydia trachomatis 434/Bu 5858248 YP_001654768.1 CDS fusA NC_010287.1 824097 826181 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(824097..826181) Chlamydia trachomatis 434/Bu 5858519 YP_001654769.1 CDS rpsG NC_010287.1 826223 826696 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(826223..826696) Chlamydia trachomatis 434/Bu 5858037 YP_001654770.2 CDS rpsL NC_010287.1 826746 827117 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(826746..827117) Chlamydia trachomatis 434/Bu 5858160 YP_001654771.1 CDS CTL0699 NC_010287.1 827377 827715 D hypothetical protein 827377..827715 Chlamydia trachomatis 434/Bu 5857998 YP_001654772.1 CDS tsp NC_010287.1 827873 829822 D carboxy-terminal processing protease 827873..829822 Chlamydia trachomatis 434/Bu 5858256 YP_001654773.1 CDS crpA NC_010287.1 829929 830381 R hypothetical protein complement(829929..830381) Chlamydia trachomatis 434/Bu 5858812 YP_001654774.1 CDS omcB NC_010287.1 830559 832220 R 60kD cysteine-rich outer membrane protein complement(830559..832220) Chlamydia trachomatis 434/Bu 5858203 YP_001654775.1 CDS omcA NC_010287.1 832367 832633 R hypothetical protein complement(832367..832633) Chlamydia trachomatis 434/Bu 5858422 YP_001654776.1 CDS CTL0704 NC_010287.1 832970 833194 D lipoprotein 832970..833194 Chlamydia trachomatis 434/Bu 5858155 YP_001654777.1 CDS gltX NC_010287.1 833191 834711 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(833191..834711) Chlamydia trachomatis 434/Bu 5858291 YP_001654778.1 CDS euo NC_010287.1 834982 835533 R hypothetical protein complement(834982..835533) Chlamydia trachomatis 434/Bu 5858744 YP_001654779.1 CDS recJ NC_010287.1 835937 837691 R single-stranded-DNA-specific exonuclease complement(835937..837691) Chlamydia trachomatis 434/Bu 5858123 YP_001654780.1 CDS secF NC_010287.1 837809 842011 R part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; in these organisms there is an unknown N-terminal domain; bifunctional preprotein translocase subunit SecD/SecF complement(837809..842011) Chlamydia trachomatis 434/Bu 5858531 YP_001654781.1 CDS CTL0709 NC_010287.1 842431 842763 R hypothetical protein complement(842431..842763) Chlamydia trachomatis 434/Bu 5858520 YP_001654782.1 CDS uppS NC_010287.1 843225 843986 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 843225..843986 Chlamydia trachomatis 434/Bu 5858394 YP_001654783.1 CDS cdsA NC_010287.1 843992 844909 D phosphatidate cytidylyltransferase 843992..844909 Chlamydia trachomatis 434/Bu 5858818 YP_001654784.1 CDS cmk NC_010287.1 844906 845556 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 844906..845556 Chlamydia trachomatis 434/Bu 5858467 YP_001654785.1 CDS plsC NC_010287.1 845553 846203 D 1-acyl-sn-glycerol-3-phosphate acyltransferase 845553..846203 Chlamydia trachomatis 434/Bu 5858044 YP_001654786.1 CDS argS NC_010287.1 846218 847909 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 846218..847909 Chlamydia trachomatis 434/Bu 5858772 YP_001654787.1 CDS murA NC_010287.1 847947 849281 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(847947..849281) Chlamydia trachomatis 434/Bu 5858463 YP_001654788.1 CDS tarp NC_010287.1 849494 852511 D translocated actin-recruiting phosphoprotein 849494..852511 Chlamydia trachomatis 434/Bu 5858633 YP_001654789.1 CDS CTL0717 NC_010287.1 852563 853279 R hypothetical protein complement(852563..853279) Chlamydia trachomatis 434/Bu 5858082 YP_001654790.1 CDS CTL0718 NC_010287.1 853462 853965 R ribosomal-protein-alanine acetyltransferase complement(853462..853965) Chlamydia trachomatis 434/Bu 5857916 YP_001654791.1 CDS prfB NC_010287.1 853962 855069 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(join(853962..854999,855001..855069)) Chlamydia trachomatis 434/Bu 5858265 YP_001654792.1 CDS CTL0720 NC_010287.1 855389 855649 D Note the Pfam PF02201;SWIB-MDM2 domain.; hypothetical protein 855389..855649 Chlamydia trachomatis 434/Bu 5858020 YP_001654793.1 CDS CTL0721 NC_010287.1 855707 856696 D metallo-phosphoesterase 855707..856696 Chlamydia trachomatis 434/Bu 5858324 YP_001654794.1 CDS ispD NC_010287.1 856686 857345 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 856686..857345 Chlamydia trachomatis 434/Bu 5858346 YP_001654795.1 CDS truA NC_010287.1 857354 858157 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 857354..858157 Chlamydia trachomatis 434/Bu 5858814 YP_001654796.1 CDS CTL0724 NC_010287.1 858109 858783 R HAD superfamily hydrolase complement(858109..858783) Chlamydia trachomatis 434/Bu 5858823 YP_001654797.1 CDS CTL0725 NC_010287.1 858876 859517 D hypothetical protein 858876..859517 Chlamydia trachomatis 434/Bu 5858348 YP_001654798.1 CDS CTL0726 NC_010287.1 859811 860140 D hypothetical protein 859811..860140 Chlamydia trachomatis 434/Bu 5858303 YP_001654799.1 CDS atoS NC_010287.1 860118 861176 D two component regulator histidine kinase 860118..861176 Chlamydia trachomatis 434/Bu 5858377 YP_001654800.1 CDS atoC NC_010287.1 861219 862379 D two component system response regulator 861219..862379 Chlamydia trachomatis 434/Bu 5858613 YP_001654801.1 CDS CTL0729 NC_010287.1 862606 863142 D hypothetical protein 862606..863142 Chlamydia trachomatis 434/Bu 5857912 YP_001654802.1 CDS recO NC_010287.1 863112 863843 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 863112..863843 Chlamydia trachomatis 434/Bu 5858380 YP_001654803.1 CDS CTL0731 NC_010287.1 863840 864442 R hypothetical protein complement(863840..864442) Chlamydia trachomatis 434/Bu 5858178 YP_001654804.1 CDS CTL0733 NC_010287.1 864920 865714 D hypothetical protein 864920..865714 Chlamydia trachomatis 434/Bu 5858300 YP_001654805.1 CDS CTL0734 NC_010287.1 865720 866034 D hypothetical protein 865720..866034 Chlamydia trachomatis 434/Bu 5857911 YP_001654806.1 CDS CTL0735 NC_010287.1 865973 866902 R hypothetical protein complement(865973..866902) Chlamydia trachomatis 434/Bu 5857918 YP_001654807.1 CDS pheT NC_010287.1 866990 869362 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 866990..869362 Chlamydia trachomatis 434/Bu 5858271 YP_001654808.1 CDS CTL0737 NC_010287.1 869359 870324 D hypothetical protein 869359..870324 Chlamydia trachomatis 434/Bu 5858430 YP_001654809.1 CDS CTL0738 NC_010287.1 870343 870855 D DNA methyltransferase 870343..870855 Chlamydia trachomatis 434/Bu 5857907 YP_001654810.1 CDS oppC2 NC_010287.1 870852 872588 R oligonucleotide transport system permease complement(870852..872588) Chlamydia trachomatis 434/Bu 5858412 YP_001654811.1 CDS oppB2 NC_010287.1 872590 874005 R oligopeptide transport system membrane permease complement(872590..874005) Chlamydia trachomatis 434/Bu 5858208 YP_001654812.1 CDS oppA4 NC_010287.1 874050 876140 R oligopeptide transport system substrate-binding protein complement(874050..876140) Chlamydia trachomatis 434/Bu 5858433 YP_008470967.1 CDS CTL0742a NC_010287.1 876391 876552 R hypothetical protein complement(876391..876552) Chlamydia trachomatis 434/Bu 16665138 YP_001654813.1 CDS CTL0742 NC_010287.1 876746 877477 R hypothetical protein complement(876746..877477) Chlamydia trachomatis 434/Bu 5858440 YP_001654814.1 CDS CTL0743 NC_010287.1 877639 878292 R hypothetical protein complement(877639..878292) Chlamydia trachomatis 434/Bu 5858417 YP_001654815.1 CDS CTL0744 NC_010287.1 878760 879125 D hypothetical protein 878760..879125 Chlamydia trachomatis 434/Bu 5857925 YP_001654816.1 CDS CTL0745 NC_010287.1 879104 880102 R hypothetical protein complement(879104..880102) Chlamydia trachomatis 434/Bu 5858325 YP_001654817.1 CDS hemH NC_010287.1 880259 881203 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(880259..881203) Chlamydia trachomatis 434/Bu 5858375 YP_001654818.1 CDS fliY NC_010287.1 881225 882010 R glutamine-binding protein complement(881225..882010) Chlamydia trachomatis 434/Bu 5858836 YP_001654819.1 CDS CTL0748 NC_010287.1 882056 882628 R methyltransferase complement(882056..882628) Chlamydia trachomatis 434/Bu 5858031 YP_001654820.1 CDS CTL0749 NC_010287.1 882625 883359 R phosphohydrolase complement(882625..883359) Chlamydia trachomatis 434/Bu 5858383 YP_001654821.1 CDS glgC NC_010287.1 883448 884773 R glucose-1-phosphate adenylyltransferase complement(883448..884773) Chlamydia trachomatis 434/Bu 5858237 YP_001654822.1 CDS CTL0751 NC_010287.1 884965 885216 D hypothetical protein 884965..885216 Chlamydia trachomatis 434/Bu 5858661 YP_001654823.1 CDS rho NC_010287.1 885226 886620 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(885226..886620) Chlamydia trachomatis 434/Bu 5858390 YP_001654824.1 CDS coaE NC_010287.1 886617 887225 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(886617..887225) Chlamydia trachomatis 434/Bu 5858507 YP_001654825.1 CDS polA NC_010287.1 887219 889819 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(887219..889819) Chlamydia trachomatis 434/Bu 5858230 YP_001654826.1 CDS sohB NC_010287.1 889836 890831 R protease IV complement(889836..890831) Chlamydia trachomatis 434/Bu 5858706 YP_001654827.1 CDS CTL0756 NC_010287.1 890971 892593 R nucleotide transport protein complement(890971..892593) Chlamydia trachomatis 434/Bu 5858780 YP_001654828.1 CDS pgsA NC_010287.1 892805 893311 R CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(892805..893311) Chlamydia trachomatis 434/Bu 5858351 YP_001654829.1 CDS CTL0758 NC_010287.1 893707 893856 R hypothetical protein complement(893707..893856) Chlamydia trachomatis 434/Bu 5858269 YP_001654830.1 CDS dnaB NC_010287.1 893825 895243 D unwinds double stranded DNA; replicative DNA helicase 893825..895243 Chlamydia trachomatis 434/Bu 5858405 YP_001654831.1 CDS gidA NC_010287.1 895538 897370 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 895538..897370 Chlamydia trachomatis 434/Bu 5858651 YP_001654832.1 CDS lplA NC_010287.1 897360 898061 D lipoate-protein ligase A 897360..898061 Chlamydia trachomatis 434/Bu 5858485 YP_001654833.1 CDS ndk NC_010287.1 898118 898543 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(898118..898543) Chlamydia trachomatis 434/Bu 5858308 YP_001654834.1 CDS ruvA NC_010287.1 898703 899305 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(898703..899305) Chlamydia trachomatis 434/Bu 5857995 YP_001654835.1 CDS ruvC NC_010287.1 899325 899837 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(899325..899837) Chlamydia trachomatis 434/Bu 5858100 YP_001654836.1 CDS CTL0765 NC_010287.1 899945 900394 R hypothetical protein complement(899945..900394) Chlamydia trachomatis 434/Bu 5858704 YP_001654837.1 CDS CTL0766 NC_010287.1 900786 901652 R hypothetical protein complement(900786..901652) Chlamydia trachomatis 434/Bu 5858298 YP_001654838.1 CDS gapA NC_010287.1 901663 902667 R glyceraldehyde 3-phosphate dehydrogenase complement(901663..902667) Chlamydia trachomatis 434/Bu 5858421 YP_001654839.1 CDS rplQ NC_010287.1 902711 903136 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(902711..903136) Chlamydia trachomatis 434/Bu 5858649 YP_001654840.1 CDS rpoA NC_010287.1 903145 904278 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(903145..904278) Chlamydia trachomatis 434/Bu 5858545 YP_001654841.1 CDS rpsK NC_010287.1 904299 904697 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(904299..904697) Chlamydia trachomatis 434/Bu 5858051 YP_001654842.1 CDS rpsM NC_010287.1 904719 905087 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(904719..905087) Chlamydia trachomatis 434/Bu 5857992 YP_001654843.1 CDS secY NC_010287.1 905143 906516 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(905143..906516) Chlamydia trachomatis 434/Bu 5857999 YP_001654844.1 CDS rplO NC_010287.1 906539 906973 R late assembly protein; 50S ribosomal protein L15 complement(906539..906973) Chlamydia trachomatis 434/Bu 5858342 YP_001654845.1 CDS rpsE NC_010287.1 906966 907463 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(906966..907463) Chlamydia trachomatis 434/Bu 5858056 YP_001654846.1 CDS rplR NC_010287.1 907478 907849 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(907478..907849) Chlamydia trachomatis 434/Bu 5858024 YP_001654847.1 CDS rplF NC_010287.1 907871 908422 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(907871..908422) Chlamydia trachomatis 434/Bu 5858516 YP_001654848.1 CDS rpsH NC_010287.1 908450 908851 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(908450..908851) Chlamydia trachomatis 434/Bu 5858635 YP_001654849.1 CDS rplE NC_010287.1 908869 909411 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(908869..909411) Chlamydia trachomatis 434/Bu 5858563 YP_001654850.1 CDS rplX NC_010287.1 909413 909748 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(909413..909748) Chlamydia trachomatis 434/Bu 5858588 YP_001654851.1 CDS rplN NC_010287.1 909761 910129 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(909761..910129) Chlamydia trachomatis 434/Bu 5858501 YP_001654852.1 CDS rpsQ NC_010287.1 910146 910397 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(910146..910397) Chlamydia trachomatis 434/Bu 5858543 YP_001654853.1 CDS rpmC NC_010287.1 910390 910608 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(910390..910608) Chlamydia trachomatis 434/Bu 5858012 YP_001654854.1 CDS rplP NC_010287.1 910610 911026 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(910610..911026) Chlamydia trachomatis 434/Bu 5858529 YP_001654855.1 CDS rpsC NC_010287.1 911059 911733 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(911059..911733) Chlamydia trachomatis 434/Bu 5858591 YP_001654856.1 CDS rplV NC_010287.1 911743 912078 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(911743..912078) Chlamydia trachomatis 434/Bu 5858697 YP_001654857.1 CDS rpsS NC_010287.1 912097 912363 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(912097..912363) Chlamydia trachomatis 434/Bu 5858167 YP_001654858.1 CDS rplB NC_010287.1 912369 913223 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(912369..913223) Chlamydia trachomatis 434/Bu 5858775 YP_001654859.1 CDS rplW NC_010287.1 913247 913582 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(913247..913582) Chlamydia trachomatis 434/Bu 5858558 YP_001654860.1 CDS rplD NC_010287.1 913598 914266 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(913598..914266) Chlamydia trachomatis 434/Bu 5858492 YP_001654861.1 CDS rplC NC_010287.1 914275 914940 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(914275..914940) Chlamydia trachomatis 434/Bu 5858171 YP_001654862.1 CDS CTL0791 NC_010287.1 915375 916271 R hypothetical protein complement(915375..916271) Chlamydia trachomatis 434/Bu 5858628 YP_001654863.1 CDS fmt NC_010287.1 916437 917387 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(916437..917387) Chlamydia trachomatis 434/Bu 5858328 YP_001654864.1 CDS lpxA NC_010287.1 917377 918219 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(917377..918219) Chlamydia trachomatis 434/Bu 5858767 YP_001654865.1 CDS fabZ NC_010287.1 918231 918692 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(918231..918692) Chlamydia trachomatis 434/Bu 5858310 YP_001654866.1 CDS lpxC NC_010287.1 918689 919549 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(918689..919549) Chlamydia trachomatis 434/Bu 5858634 YP_001654867.1 CDS lnt NC_010287.1 919649 921277 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(919649..921277) Chlamydia trachomatis 434/Bu 5858636 YP_001654868.1 CDS CTL0797 NC_010287.1 921341 921823 R acyl-CoA hydrolase complement(921341..921823) Chlamydia trachomatis 434/Bu 5858685 YP_001654869.1 CDS dnaQ2 NC_010287.1 921959 922711 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(921959..922711) Chlamydia trachomatis 434/Bu 5858322 YP_001654870.1 CDS CTL0799 NC_010287.1 922715 923188 R nucleotide-binding protein complement(922715..923188) Chlamydia trachomatis 434/Bu 5858689 YP_001654871.1 CDS CTL0800 NC_010287.1 923167 923883 R hypothetical protein complement(923167..923883) Chlamydia trachomatis 434/Bu 5858319 YP_001654872.1 CDS trxA NC_010287.1 924605 924913 D thioredoxin 924605..924913 Chlamydia trachomatis 434/Bu 5858301 YP_001654873.1 CDS CTL0802 NC_010287.1 924963 925418 R SpoU family rRNA methylase complement(924963..925418) Chlamydia trachomatis 434/Bu 5858798 YP_001654874.1 CDS mip NC_010287.1 925434 926165 R peptidyl-prolyl cis-trans isomerase complement(925434..926165) Chlamydia trachomatis 434/Bu 5858373 YP_001654875.1 CDS aspS NC_010287.1 926303 928051 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(926303..928051) Chlamydia trachomatis 434/Bu 5858582 YP_001654876.1 CDS hisS NC_010287.1 928032 929318 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(928032..929318) Chlamydia trachomatis 434/Bu 5858643 YP_001654877.1 CDS uhpC NC_010287.1 929754 931124 D sugar phosphate permease 929754..931124 Chlamydia trachomatis 434/Bu 5858832 YP_001654878.1 CDS dnaE NC_010287.1 931138 934851 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 931138..934851 Chlamydia trachomatis 434/Bu 5858824 YP_001654879.1 CDS CTL0808 NC_010287.1 935080 935949 R hypothetical protein complement(935080..935949) Chlamydia trachomatis 434/Bu 5858578 YP_001654880.1 CDS CTL0809 NC_010287.1 936101 937057 D note the tetratricopeptide repeat motifs; hypothetical protein 936101..937057 Chlamydia trachomatis 434/Bu 5858224 YP_001654881.1 CDS CTL0810 NC_010287.1 937082 937666 D hypothetical protein 937082..937666 Chlamydia trachomatis 434/Bu 5858393 YP_001654882.1 CDS rsbW NC_010287.1 937653 938093 D sigma regulatory factor-histidine kinase 937653..938093 Chlamydia trachomatis 434/Bu 5858259 YP_001654883.1 CDS CTL0812 NC_010287.1 938100 938525 R hypothetical protein complement(938100..938525) Chlamydia trachomatis 434/Bu 5857949 YP_001654884.1 CDS dacC NC_010287.1 938633 939946 D pseudo in SeroD intact in Sero A; D-alanyl-D-alanine carboxypeptidase 938633..939946 Chlamydia trachomatis 434/Bu 5858238 YP_001654885.1 CDS CTL0814 NC_010287.1 940079 940486 D hypothetical protein 940079..940486 Chlamydia trachomatis 434/Bu 5858452 YP_001654886.1 CDS CTL0815 NC_010287.1 940483 941589 D methyltransferase 940483..941589 Chlamydia trachomatis 434/Bu 5858250 YP_001654887.1 CDS brnQ NC_010287.1 941739 942974 D branched-chain amino acid transport system carrier protein 941739..942974 Chlamydia trachomatis 434/Bu 5858270 YP_001654888.1 CDS CTL0818 NC_010287.1 943148 946747 D helicase 943148..946747 Chlamydia trachomatis 434/Bu 5858630 YP_001654889.1 CDS CTL0819 NC_010287.1 946926 947405 D hypothetical protein 946926..947405 Chlamydia trachomatis 434/Bu 5858220 YP_001654890.1 CDS lpdA NC_010287.1 947614 949011 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 947614..949011 Chlamydia trachomatis 434/Bu 5857910 YP_001654891.1 CDS lipA NC_010287.1 949008 949943 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 949008..949943 Chlamydia trachomatis 434/Bu 5858095 YP_001654892.1 CDS sctJ NC_010287.1 950047 951024 D type III secretion system membrane protein 950047..951024 Chlamydia trachomatis 434/Bu 5858694 YP_001654893.1 CDS CTL0823 NC_010287.1 951025 951861 D hypothetical protein 951025..951861 Chlamydia trachomatis 434/Bu 5858163 YP_001654894.1 CDS sctL NC_010287.1 952137 952808 D type III secretion system protein 952137..952808 Chlamydia trachomatis 434/Bu 5858219 YP_001654895.1 CDS sctR NC_010287.1 952821 953741 D type III secretion system protein 952821..953741 Chlamydia trachomatis 434/Bu 5858013 YP_001654896.1 CDS sctS NC_010287.1 953753 954037 D type III secretion system membrane protein 953753..954037 Chlamydia trachomatis 434/Bu 5858765 YP_001654897.1 CDS sctT NC_010287.1 954044 954913 D type III secretion system membrane protein 954044..954913 Chlamydia trachomatis 434/Bu 5858166 YP_001654898.1 CDS CTL0828 NC_010287.1 954992 955435 R hypothetical protein complement(954992..955435) Chlamydia trachomatis 434/Bu 5858188 YP_001654899.1 CDS CTL0829 NC_010287.1 955525 956517 R hypothetical protein complement(955525..956517) Chlamydia trachomatis 434/Bu 5858225 YP_001654900.1 CDS CTL0830 NC_010287.1 956523 957047 R hypothetical protein complement(956523..957047) Chlamydia trachomatis 434/Bu 5858344 YP_001654901.1 CDS CTL0831 NC_010287.1 957032 957487 R hypothetical protein complement(957032..957487) Chlamydia trachomatis 434/Bu 5858374 YP_001654902.1 CDS gspG NC_010287.1 957471 957800 R general secretion pathway protein G complement(957471..957800) Chlamydia trachomatis 434/Bu 5857928 YP_001654903.1 CDS gspF NC_010287.1 957862 959037 R general secretion pathway protein F complement(957862..959037) Chlamydia trachomatis 434/Bu 5858170 YP_001654904.1 CDS gspE NC_010287.1 959049 960554 R general secretion pathway protein E complement(959049..960554) Chlamydia trachomatis 434/Bu 5857994 YP_001654905.1 CDS gspD NC_010287.1 960538 962820 R general secretion pathway protein D complement(960538..962820) Chlamydia trachomatis 434/Bu 5858577 YP_001654906.1 CDS CTL0836 NC_010287.1 962821 964050 R hypothetical protein complement(962821..964050) Chlamydia trachomatis 434/Bu 5858749 YP_001654907.1 CDS pepP NC_010287.1 964179 965249 R proline dipeptidase complement(964179..965249) Chlamydia trachomatis 434/Bu 5858409 YP_001654908.1 CDS mutL NC_010287.1 965260 966990 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(965260..966990) Chlamydia trachomatis 434/Bu 5857954 YP_001654909.1 CDS scc2 NC_010287.1 967270 967968 D type III secretion chaperone 967270..967968 Chlamydia trachomatis 434/Bu 5858547 YP_001654910.1 CDS CTL0840 NC_010287.1 967985 968344 D hypothetical protein 967985..968344 Chlamydia trachomatis 434/Bu 5857944 YP_001654911.1 CDS copB NC_010287.1 968381 969844 D type III secretion system membrane protein 968381..969844 Chlamydia trachomatis 434/Bu 5858247 YP_001654912.1 CDS copD NC_010287.1 969875 971194 D type III secretion system protein 969875..971194 Chlamydia trachomatis 434/Bu 5858647 YP_001654913.1 CDS CTL0843 NC_010287.1 971272 972255 R integral membrane protein complement(971272..972255) Chlamydia trachomatis 434/Bu 5858034 YP_001654914.1 CDS thrS NC_010287.1 972560 974467 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 972560..974467 Chlamydia trachomatis 434/Bu 5858349 YP_001654915.1 CDS minD NC_010287.1 974919 975686 D ParA family chromosome partitioning ATPase 974919..975686 Chlamydia trachomatis 434/Bu 5858400 YP_001654916.1 CDS gp6D NC_010287.1 975691 976482 D virulence plasmid protein pGP6-D-like protein 975691..976482 Chlamydia trachomatis 434/Bu 5858313 YP_001654917.1 CDS CTL0847 NC_010287.1 976448 976999 D hypothetical protein 976448..976999 Chlamydia trachomatis 434/Bu 5858337 YP_001654918.1 CDS trpS NC_010287.1 977178 978218 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 977178..978218 Chlamydia trachomatis 434/Bu 5858275 YP_001654919.1 CDS uvrB NC_010287.1 978243 980249 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 978243..980249 Chlamydia trachomatis 434/Bu 5858802 YP_001654920.1 CDS eno NC_010287.1 980411 981685 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 980411..981685 Chlamydia trachomatis 434/Bu 5858819 YP_001654921.1 CDS rbsU NC_010287.1 981813 983765 D sigma regulatory family PP2C phosphatase 981813..983765 Chlamydia trachomatis 434/Bu 5858650 YP_001654922.1 CDS CTL0852 NC_010287.1 983890 985698 D hypothetical protein 983890..985698 Chlamydia trachomatis 434/Bu 5858554 YP_001654923.1 CDS CTL0853 NC_010287.1 985713 988577 R hypothetical protein complement(985713..988577) Chlamydia trachomatis 434/Bu 5858381 YP_001654924.1 CDS sdhB NC_010287.1 988674 989372 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(988674..989372) Chlamydia trachomatis 434/Bu 5858334 YP_001654925.1 CDS sdhA NC_010287.1 989451 991331 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(989451..991331) Chlamydia trachomatis 434/Bu 5858174 YP_001654926.1 CDS CTL0858 NC_010287.1 992336 993127 R hydrolase complement(992336..993127) Chlamydia trachomatis 434/Bu 5858235 YP_001654927.1 CDS dsdD NC_010287.1 993212 995290 R thiol:disulfide interchange protein complement(993212..995290) Chlamydia trachomatis 434/Bu 5858367 YP_001654928.1 CDS exbB NC_010287.1 995443 996141 D macromolecule transporter 995443..996141 Chlamydia trachomatis 434/Bu 5858614 YP_001654929.1 CDS CTL0861 NC_010287.1 996138 996545 D macromolecule transport protein 996138..996545 Chlamydia trachomatis 434/Bu 5858064 YP_001654930.1 CDS CTL0861A NC_010287.1 996548 997255 D histone H1-I 996548..997255 Chlamydia trachomatis 434/Bu 5858297 YP_001654931.1 CDS tolB NC_010287.1 997255 998550 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 997255..998550 Chlamydia trachomatis 434/Bu 5858217 YP_001654932.1 CDS pal NC_010287.1 998547 999113 D peptidoglycan-associated lipoprotein 998547..999113 Chlamydia trachomatis 434/Bu 5858363 YP_001654933.1 CDS CTL0864 NC_010287.1 999103 999705 D soluble transglycosylase 999103..999705 Chlamydia trachomatis 434/Bu 5858445 YP_001654934.1 CDS CTL0865 NC_010287.1 999776 1000168 D hypothetical protein 999776..1000168 Chlamydia trachomatis 434/Bu 5858278 YP_001654935.1 CDS ahpC NC_010287.1 1000165 1000752 R thioredoxin peroxidase complement(1000165..1000752) Chlamydia trachomatis 434/Bu 5857909 YP_001654936.1 CDS groEL2 NC_010287.1 1000960 1002561 R molecular chaperone GroEL complement(1000960..1002561) Chlamydia trachomatis 434/Bu 5858350 YP_001654937.1 CDS CTL0868 NC_010287.1 1002641 1003867 R hypothetical protein complement(1002641..1003867) Chlamydia trachomatis 434/Bu 5858121 YP_001654938.1 CDS CTL0869 NC_010287.1 1004063 1004692 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 1004063..1004692 Chlamydia trachomatis 434/Bu 5858323 YP_001654939.1 CDS CTL0870 NC_010287.1 1004666 1004905 R hypothetical protein complement(1004666..1004905) Chlamydia trachomatis 434/Bu 5858299 YP_001654940.1 CDS ung NC_010287.1 1004890 1005579 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(1004890..1005579) Chlamydia trachomatis 434/Bu 5858388 YP_001654941.1 CDS uvrD NC_010287.1 1005660 1007564 D DNA helicase 1005660..1007564 Chlamydia trachomatis 434/Bu 5858826 YP_001654942.1 CDS rpoN NC_010287.1 1007568 1008878 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 1007568..1008878 Chlamydia trachomatis 434/Bu 5858833 YP_001654943.1 CDS CTL0874 NC_010287.1 1008986 1009681 R hypothetical protein complement(1008986..1009681) Chlamydia trachomatis 434/Bu 5858740 YP_001654944.1 CDS CTL0875 NC_010287.1 1009678 1010409 R hypothetical protein complement(1009678..1010409) Chlamydia trachomatis 434/Bu 5858369 YP_001654945.1 CDS folA NC_010287.1 1010381 1010860 R dihydrofolate reductase complement(1010381..1010860) Chlamydia trachomatis 434/Bu 5858372 YP_001654946.1 CDS folP NC_010287.1 1010857 1012209 R 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(1010857..1012209) Chlamydia trachomatis 434/Bu 5858627 YP_001654947.1 CDS folX NC_010287.1 1012206 1012580 R dihydroneopterin aldolase complement(1012206..1012580) Chlamydia trachomatis 434/Bu 5858156 YP_001654948.1 CDS rpoD NC_010287.1 1012599 1014314 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor complement(1012599..1014314) Chlamydia trachomatis 434/Bu 5858464 YP_001654949.1 CDS CTL0880 NC_010287.1 1014463 1015752 R integral membrane protein complement(1014463..1015752) Chlamydia trachomatis 434/Bu 5858732 YP_001654950.1 CDS rpsT NC_010287.1 1016201 1016497 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1016201..1016497 Chlamydia trachomatis 434/Bu 5858407 YP_001654951.1 CDS CTL0882 NC_010287.1 1016730 1017530 D hypothetical protein 1016730..1017530 Chlamydia trachomatis 434/Bu 5857989 YP_001654952.1 CDS CTL0883 NC_010287.1 1017586 1020213 R hypothetical protein complement(1017586..1020213) Chlamydia trachomatis 434/Bu 5858241 YP_001654953.1 CDS CTL0884 NC_010287.1 1020329 1022845 D hypothetical protein 1020329..1022845 Chlamydia trachomatis 434/Bu 5858335 YP_001654954.1 CDS CTL0885 NC_010287.1 1022909 1025407 R hypothetical protein complement(1022909..1025407) Chlamydia trachomatis 434/Bu 5858222 YP_001654955.1 CDS CTL0886 NC_010287.1 1025635 1027590 R member of the CHLPN 76 kD protein family of proteins; hypothetical protein complement(1025635..1027590) Chlamydia trachomatis 434/Bu 5858321 YP_001654956.1 CDS CTL0887 NC_010287.1 1027698 1028999 R member of the CHLPN 76 kD protein family of proteins; hypothetical protein complement(1027698..1028999) Chlamydia trachomatis 434/Bu 5858035 YP_008470968.1 CDS CTL0887a NC_010287.1 1029017 1029235 D hypothetical protein 1029017..1029235 Chlamydia trachomatis 434/Bu 16665139 YP_001654957.1 CDS mviN NC_010287.1 1029243 1030826 R virulence protein complement(1029243..1030826) Chlamydia trachomatis 434/Bu 5858622 YP_001654958.1 CDS nfo NC_010287.1 1031026 1031892 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 1031026..1031892 Chlamydia trachomatis 434/Bu 5858592 YP_001654959.1 CDS rpsD NC_010287.1 1031988 1032617 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(1031988..1032617) Chlamydia trachomatis 434/Bu 5858496 YP_001654960.1 CDS CTL0891 NC_010287.1 1033001 1033984 D hypothetical protein 1033001..1033984 Chlamydia trachomatis 434/Bu 5858693 YP_001654961.1 CDS ispA NC_010287.1 1034057 1034932 R dimethylallyltransferase complement(1034057..1034932) Chlamydia trachomatis 434/Bu 5858624 YP_001654962.1 CDS glmU NC_010287.1 1034988 1035605 R glucosamine-1-phosphate acetyltransferase complement(1034988..1035605) Chlamydia trachomatis 434/Bu 5858708 YP_001654963.1 CDS CTL0894 NC_010287.1 1035658 1036341 R transcriptional regulatory protein complement(1035658..1036341) Chlamydia trachomatis 434/Bu 5858490 YP_001654964.1 CDS CTL0895 NC_010287.1 1036521 1036775 D hypothetical protein 1036521..1036775 Chlamydia trachomatis 434/Bu 5858664 YP_001654965.1 CDS CTL0897 NC_010287.1 1036956 1038545 R hypothetical protein complement(1036956..1038545) Chlamydia trachomatis 434/Bu 5858281 CTL_t01 tRNA tRNA-Ala NC_010287.1 5166 5238 R tRNA-Ala complement(5166..5238) Chlamydia trachomatis 434/Bu 5858778 CTL_t03 tRNA tRNA-Arg NC_010287.1 32412 32484 D tRNA-Arg 32412..32484 Chlamydia trachomatis 434/Bu 5858674 CTL_t31 tRNA tRNA-Thr NC_010287.1 53142 53214 D tRNA-Thr 53142..53214 Chlamydia trachomatis 434/Bu 5858173 CTL_t20 tRNA tRNA-Lys NC_010287.1 55008 55080 R tRNA-Lys complement(55008..55080) Chlamydia trachomatis 434/Bu 5858461 CTL_t10 tRNA tRNA-Glu NC_010287.1 55097 55171 R tRNA-Glu complement(55097..55171) Chlamydia trachomatis 434/Bu 5858292 CTL_t11 tRNA tRNA-Gly NC_010287.1 58336 58406 R tRNA-Gly complement(58336..58406) Chlamydia trachomatis 434/Bu 5858043 CTL_t12 tRNA tRNA-Gly NC_010287.1 94310 94381 R tRNA-Gly complement(94310..94381) Chlamydia trachomatis 434/Bu 5858398 CTL_t13 tRNA tRNA-His NC_010287.1 133365 133438 R tRNA-His complement(133365..133438) Chlamydia trachomatis 434/Bu 5858644 CTL_t08 tRNA tRNA-Cys NC_010287.1 167776 167846 R tRNA-Cys complement(167776..167846) Chlamydia trachomatis 434/Bu 5858136 CTL_t09 tRNA tRNA-Gln NC_010287.1 216887 216958 D tRNA-Gln 216887..216958 Chlamydia trachomatis 434/Bu 5858623 CTL_t36 tRNA tRNA-Val NC_010287.1 259299 259372 R tRNA-Val complement(259299..259372) Chlamydia trachomatis 434/Bu 5858355 CTL_t27 tRNA tRNA-Ser NC_010287.1 264109 264193 D tRNA-Ser 264109..264193 Chlamydia trachomatis 434/Bu 5858715 CTL_t15 tRNA tRNA-Leu NC_010287.1 297883 297964 D tRNA-Leu 297883..297964 Chlamydia trachomatis 434/Bu 5858091 CTL_t06 tRNA tRNA-Asn NC_010287.1 364905 364976 R tRNA-Asn complement(364905..364976) Chlamydia trachomatis 434/Bu 5858309 CTL_t26 tRNA tRNA-Pro NC_010287.1 391259 391333 R tRNA-Pro complement(391259..391333) Chlamydia trachomatis 434/Bu 5858764 CTL_t32 tRNA tRNA-Thr NC_010287.1 481086 481158 D tRNA-Thr 481086..481158 Chlamydia trachomatis 434/Bu 5857986 CTL_t35 tRNA tRNA-Tyr NC_010287.1 481169 481251 D tRNA-Tyr 481169..481251 Chlamydia trachomatis 434/Bu 5858267 CTL_t14 tRNA tRNA-Ile NC_010287.1 520777 520850 R tRNA-Ile complement(520777..520850) Chlamydia trachomatis 434/Bu 5857970 CTL_t02 tRNA tRNA-Ala NC_010287.1 520856 520928 R tRNA-Ala complement(520856..520928) Chlamydia trachomatis 434/Bu 5858305 CTL_t22 tRNA tRNA-Met NC_010287.1 552720 552793 R tRNA-Met complement(552720..552793) Chlamydia trachomatis 434/Bu 5858424 CTL_t23 tRNA tRNA-Met NC_010287.1 552812 552884 R tRNA-Met complement(552812..552884) Chlamydia trachomatis 434/Bu 5858289 CTL_t07 tRNA tRNA-Asp NC_010287.1 568726 568799 R tRNA-Asp complement(568726..568799) Chlamydia trachomatis 434/Bu 5858768 CTL_t37 tRNA tRNA-Val NC_010287.1 568807 568879 R tRNA-Val complement(568807..568879) Chlamydia trachomatis 434/Bu 5858343 CTL_t34 tRNA tRNA-Trp NC_010287.1 680336 680408 R tRNA-Trp complement(680336..680408) Chlamydia trachomatis 434/Bu 5857917 CTL_t33 tRNA tRNA-Thr NC_010287.1 681679 681750 R tRNA-Thr complement(681679..681750) Chlamydia trachomatis 434/Bu 5858817 CTL_t21 tRNA tRNA-Met NC_010287.1 686973 687045 D tRNA-Met 686973..687045 Chlamydia trachomatis 434/Bu 5858354 CTL_t28 tRNA tRNA-Ser NC_010287.1 727820 727906 D tRNA-Ser 727820..727906 Chlamydia trachomatis 434/Bu 5858277 CTL_t29 tRNA tRNA-Ser NC_010287.1 803833 803919 R tRNA-Ser complement(803833..803919) Chlamydia trachomatis 434/Bu 5858179 CTL_t24 tRNA tRNA-Phe NC_010287.1 808572 808644 R tRNA-Phe complement(808572..808644) Chlamydia trachomatis 434/Bu 5858514 CTL_t16 tRNA tRNA-Leu NC_010287.1 859647 859729 D tRNA-Leu 859647..859729 Chlamydia trachomatis 434/Bu 5858296 CTL_t04 tRNA tRNA-Arg NC_010287.1 862446 862519 D tRNA-Arg 862446..862519 Chlamydia trachomatis 434/Bu 5858473 CTL_t18 tRNA tRNA-Leu NC_010287.1 864573 864654 R tRNA-Leu complement(864573..864654) Chlamydia trachomatis 434/Bu 5858246 CTL_t30 tRNA tRNA-Ser NC_010287.1 893493 893581 R tRNA-Ser complement(893493..893581) Chlamydia trachomatis 434/Bu 5858437 CTL_t19 tRNA tRNA-Leu NC_010287.1 900584 900666 R tRNA-Leu complement(900584..900666) Chlamydia trachomatis 434/Bu 5858229 CTL_t17 tRNA tRNA-Leu NC_010287.1 924348 924431 D tRNA-Leu 924348..924431 Chlamydia trachomatis 434/Bu 5858361 CTL_t05 tRNA tRNA-Arg NC_010287.1 1000777 1000849 R tRNA-Arg complement(1000777..1000849) Chlamydia trachomatis 434/Bu 5858482 CTL_t25 tRNA tRNA-Pro NC_010287.1 1036875 1036948 D tRNA-Pro 1036875..1036948 Chlamydia trachomatis 434/Bu 5858042 CTL_r01 rRNA 16S_rRNA NC_010287.1 133971 135520 D 16S ribosomal RNA 133971..135520 Chlamydia trachomatis 434/Bu 5858306 CTL_r03 rRNA 23S_rRNA NC_010287.1 135836 138703 D 23S ribosomal RNA 135836..138703 Chlamydia trachomatis 434/Bu 5858648 CTL_r05 rRNA 5S_rRNA NC_010287.1 138824 138940 D 5S ribosomal RNA 138824..138940 Chlamydia trachomatis 434/Bu 5857952 CTL_r02 rRNA 16S_rRNA NC_010287.1 156015 157564 D 16S ribosomal RNA 156015..157564 Chlamydia trachomatis 434/Bu 5858652 CTL_r04 rRNA 23S_rRNA NC_010287.1 157880 160747 D 23S ribosomal RNA 157880..160747 Chlamydia trachomatis 434/Bu 5858615 CTL_r06 rRNA 5S_rRNA NC_010287.1 160868 160984 D 5S ribosomal RNA 160868..160984 Chlamydia trachomatis 434/Bu 5858653