-- dump date 20140619_040235 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 218497000001 SEQ_END SEQ_END NC_004552.2 1144377 1144377 DR NC_004552.2; contig end 1144377..1144377 Chlamydophila abortus S26/3 YP_219433.1 CDS hemB NC_004552.2 148 1143 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 148..1143 Chlamydophila abortus S26/3 3337993 YP_219434.1 CDS CAB002 NC_004552.2 1159 2577 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(1159..2577) Chlamydophila abortus S26/3 3337554 YP_219435.1 CDS CAB003 NC_004552.2 2600 3034 R Similar to Chlamydia muridarum hypothetical protein Tc0003 SWALL:Y003_CHLMU (SWALL:Q9PLU2) (143 aa) fasta scores: E(): 6.7e-35, 74.15% id in 147 aa. Only significant database matches are to Chlamydiaceae proteins.; hypothetical protein complement(2600..3034) Chlamydophila abortus S26/3 3337555 YP_219436.1 CDS CAB004 NC_004552.2 3147 5300 D contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation; transcript cleavage factor/unknown domain fusion protein 3147..5300 Chlamydophila abortus S26/3 3337556 YP_219437.1 CDS CAB005 NC_004552.2 5450 6643 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 5450..6643 Chlamydophila abortus S26/3 3337557 YP_219438.1 CDS CAB006 NC_004552.2 6841 7944 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 6841..7944 Chlamydophila abortus S26/3 3337558 YP_219439.1 CDS CAB007 NC_004552.2 7904 11041 R Similar to Chlamydia pneumoniae exodeoxyribonuclease V beta chain cpn0738 or cp0007 SWALL:EX5B_CHLPN (SWALL:Q9Z7G7) (1050 aa) fasta scores: E(): 0, 59.18% id in 1056 aa, and to Salmonella typhimurium exonuclease V, beta chain STM2994 SWALL:Q8ZMB6 (EMBL:AE008837) (1181 aa) fasta scores: E(): 7.4e-25, 24.65% id in 1160 aa; UvrD/REP helicase complement(7904..11041) Chlamydophila abortus S26/3 3337559 YP_219440.1 CDS CAB008 NC_004552.2 11028 14096 R Similar to many proposed exodeoxyribonuclease V proteins including: Chlamydia pneumoniae exodeoxyribonuclease V, gamma subunit cpn0737 SWALL:Q9Z7G8 (EMBL:AE001655) (1024 aa) fasta scores: E(): 4.1e-215, 52.87% id in 1027 aa; hypothetical protein complement(11028..14096) Chlamydophila abortus S26/3 3337560 YP_219441.1 CDS CAB009 NC_004552.2 14095 15807 D Similar to Chlamydia pneumoniae hypothetical protein Cp0009 SWALL:Q9K2F0 (EMBL:AE002164) (569 aa) fasta scores: E(): 2.3e-147, 67.42% id in 571 aa and to Chlamydia pneumoniae efflux protein YgeD or cpn0736 SWALL:Q9Z7G9 (EMBL:AE001655) (565 aa) fasta scores: E(): 7.3e-146, 67.19% id in 567 aa, and to Chlamydia trachomatis efflux protein YgeD or ct641 SWALL:O84647 (EMBL:AE001334) (559 aa) fasta scores: E(): 4.4e-130, 60.46% id in 564 aa; hypothetical protein 14095..15807 Chlamydophila abortus S26/3 3337561 YP_219442.1 CDS CAB010 NC_004552.2 15832 16812 R Similar to Chlamydia trachomatis hypothetical protein Ct627 ct627 SWALL:Y627_CHLTR (SWALL:O84632) (327 aa) fasta scores: E(): 3.1e-105, 80% id in 325 aa, and to Chlamydia muridarum hypothetical protein Tc0916 tc0916 SWALL:Y916_CHLMU (SWALL:Q9PJB6) (328 aa) fasta scores: E(): 7.7e-103, 77.84% id in 325 aa, and to Chlamydia pneumoniae hypothetical protein cpn0734 or cp0012 or cpj0734 SWALL:Y734_CHLPN (SWALL:Q9Z7H1) (324 aa) fasta scores: E(): 5.8e-106, 78.15% id in 325 aa.; hypothetical protein complement(15832..16812) Chlamydophila abortus S26/3 3337562 YP_219443.1 CDS rpsD NC_004552.2 17032 17661 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 17032..17661 Chlamydophila abortus S26/3 3337563 YP_219444.1 CDS CAB012 NC_004552.2 17729 18598 R Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV complement(17729..18598) Chlamydophila abortus S26/3 3337564 YP_219445.1 CDS CAB013 NC_004552.2 18664 20307 D Similar to Chlamydia muridarum virulence factor MviN homologue or tc0913 SWALL:MVIN_CHLMU (SWALL:Q9PJB9) (536 aa) fasta scores: E(): 1.6e-153, 72.6% id in 533 aa. The Chlamydia trachomatis orthologue of this gene is expressed during natural infection.; hypothetical protein 18664..20307 Chlamydophila abortus S26/3 3337565 YP_219446.1 CDS CAB014 NC_004552.2 20414 21700 D Similar to Chlamydia trachomatis lorf2 SWALL:Q46379 (EMBL:U50732) (182 aa) fasta scores: E(): 4.8e-33, 56.72% id in 171 aa. In C. trachomatis lorf2 is expressed during natural infection.In C. pneumoniae the protein encoded by the homologue of this gene is a species specific epitope.; hypothetical protein 20414..21700 Chlamydophila abortus S26/3 3337906 YP_219447.1 CDS CAB015 NC_004552.2 21806 23725 D Similar to Chlamydia pneumoniae Chlpn 76 kDa homolog_1 cpn0728 or cpj0728 or cp0018 SWALL:Q9Z7H7 (EMBL:AE001654) (651 aa) fasta scores: E(): 1.3e-66, 43.43% id in 663 aa, and to Chlamydia pneumoniae 76 kDa protein SWALL:Q46166 (EMBL:L23921) (715 aa) fasta scores: E(): 2.5e-28, 36.44% id in 461 aa. Similar to CAB014. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 21806..23725 Chlamydophila abortus S26/3 3337907 YP_219448.1 CDS CAB016 NC_004552.2 23916 26516 R Similar to Chlamydia pneumoniae hypothetical protein cpn0727 or cp0019 SWALL:Q9Z7H8 (EMBL:AE001654) (872 aa) fasta scores: E(): 5.7e-136, 47.36% id in 874 aa, and to Chlamydia muridarum hypothetical protein Tc0909 SWALL:Q9PJC2 (EMBL:AE002357) (875 aa) fasta scores: E(): 1.2e-116, 41.88% id in 881 aa, and to Chlamydia trachomatis hypothetical protein Ct619 SWALL:O84624 (EMBL:AE001332) (877 aa) fasta scores: E(): 1.3e-103, 42.45% id in 881 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(23916..26516) Chlamydophila abortus S26/3 3337908 YP_219449.1 CDS CAB017 NC_004552.2 26660 29317 D Similar to Chlamydia pneumoniae hypothetical protein Cp0020 SWALL:Q9K2E9 (EMBL:AE002166) (812 aa) fasta scores: E(): 2e-138, 53.9% id in 846 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 26660..29317 Chlamydophila abortus S26/3 3337909 YP_219450.1 CDS CAB018 NC_004552.2 29348 29578 D Similar to Chlamydia pneumoniae ct652.1 hypothetical protein cpn0725 or cpj0725 or cp0021 SWALL:Q9Z7I0 (EMBL:AE001653) (75 aa) fasta scores: E(): 1.3e-14, 66.66% id in 78 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 29348..29578 Chlamydophila abortus S26/3 3337910 YP_219451.1 CDS CAB019 NC_004552.2 29575 30297 R Similar to Chlamydia pneumoniae ABC transporter ATPase cpn0723 or cp0023 SWALL:Q9Z7I2 (EMBL:AE001653) (240 aa) fasta scores: E(): 3.4e-78, 92.08% id in 240 aa.; ABC transporter ATP-binding protein complement(29575..30297) Chlamydophila abortus S26/3 3337911 YP_219452.1 CDS dsk1 NC_004552.2 30305 30790 R Similar to Chlamydia psittaci protein of unknown function Dsk1 SWALL:Q46226 (EMBL:Z50747) (161 aa) fasta scores: E(): 5.2e-66, 96.89% id in 161 aa.; lipoprotein complement(30305..30790) Chlamydophila abortus S26/3 3337654 YP_219453.1 CDS kdsA NC_004552.2 30787 31596 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(30787..31596) Chlamydophila abortus S26/3 3337436 YP_219454.1 CDS CAB022 NC_004552.2 32041 32277 R Similar to Chlamydia pneumoniae protein cpn0720 or cp0026 or cpj0720 SWALL:Y720_CHLPN (SWALL:Q9Z7I5) (78 aa) fasta scores: E(): 1.5e-25, 92.3% id in 78 aa; hypothetical protein complement(32041..32277) Chlamydophila abortus S26/3 3337912 YP_219455.1 CDS rluD NC_004552.2 32396 33373 R Similar to Chlamydia pneumoniae predicted pseudouridine synthase SfhB or cpn0719 or cp0027 SWALL:Q9Z7I6 (EMBL:AE001653) (325 aa) fasta scores: E(): 5.4e-88, 70.66% id in 317 aa, and to Escherichia coli ribosomal large subunit pseudouridine synthase d RluD or SfhB SWALL:RLUD_ECOLI (SWALL:P33643) (326 aa) fasta scores: E(): 2.5e-32, 38.59% id in 298 aa; pseudouridine synthase complement(32396..33373) Chlamydophila abortus S26/3 3338090 YP_219456.1 CDS CAB024 NC_004552.2 33572 33880 R Similar to Chlamydia pneumoniae ct657 hypothetical protein cpn0718 or cpj0718 or cp0028 SWALL:Q9Z7I7 (EMBL:AE001653) (106 aa) fasta scores: E(): 1.6e-15, 51.54% id in 97 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(33572..33880) Chlamydophila abortus S26/3 3337913 YP_219457.1 CDS CAB025 NC_004552.2 33882 34175 R Similar to Chlamydia pneumoniae ct656 hypothetical protein cpn0717 or cpj0717 or cp0029 SWALL:Q9Z7I8 (EMBL:AE001653) (99 aa) fasta scores: E(): 6.5e-21, 65.3% id in 98 aa, and to Chlamydia trachomatis hypothetical protein Ct656 ct656 SWALL:O84663 (EMBL:AE001336) (97 aa) fasta scores: E(): 7.3e-20, 59.79% id in 97 aa, and to Chlamydia muridarum hypothetical protein Tc0027 tc0027 SWALL:Q9PLR8 (EMBL:AE002271) (95 aa) fasta scores: E(): 1.8e-12, 64.61% id in 65 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(33882..34175) Chlamydophila abortus S26/3 3337914 YP_219458.1 CDS CAB026 NC_004552.2 34288 35727 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(34288..35727) Chlamydophila abortus S26/3 3337915 YP_219459.1 CDS gyrB_2 NC_004552.2 35731 37539 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(35731..37539) Chlamydophila abortus S26/3 3337992 YP_219460.1 CDS hemA NC_004552.2 38121 39137 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 38121..39137 Chlamydophila abortus S26/3 3337916 YP_219461.1 CDS CAB029 NC_004552.2 39246 39389 D No significant database matches.; hypothetical protein 39246..39389 Chlamydophila abortus S26/3 3337917 YP_219462.1 CDS CAB030 NC_004552.2 39486 39887 D Similar to Chlamydia pneumoniae protein cpn0713 or cp0033 or cpj0713 SWALL:Y713_CHLPN (SWALL:Q9Z7J2) (130 aa) fasta scores: E(): 3.7e-37, 75.78% id in 128 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 39486..39887 Chlamydophila abortus S26/3 3337918 YP_219463.1 CDS CAB031 NC_004552.2 39907 42288 D Similar to Chlamydia pneumoniae fha domain cpn0712 or cpj0712 or cp0034 SWALL:Q9Z7J3 (EMBL:AE001652) (845 aa) fasta scores: E(): 5.3e-126, 62.85% id in 848 aa.; hypothetical protein 39907..42288 Chlamydophila abortus S26/3 3337919 YP_219464.1 CDS CAB032 NC_004552.2 42314 42595 D Similar to Chlamydia trachomatis hypothetical protein Ct665 SWALL:Y665_CHLTR (SWALL:O84672) (83 aa) fasta scores: E(): 2.4e-17, 70.37% id in 81 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 42314..42595 Chlamydophila abortus S26/3 3337920 YP_219465.1 CDS CAB033 NC_004552.2 42611 42865 D Similar to Chlamydia trachomatis protein Ct666 SWALL:Y666_CHLTR (SWALL:O84673) (83 aa) fasta scores: E(): 1e-28, 94.04% id in 84 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 42611..42865 Chlamydophila abortus S26/3 3337921 YP_219466.1 CDS CAB034 NC_004552.2 42884 43333 D Similar to Chlamydia pneumoniae hypothetical protein cpn0709 or cpj0709 or cp0037 SWALL:Q9Z7J6 (EMBL:AE001652) (149 aa) fasta scores: E(): 6.5e-47, 79.05% id in 148 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 42884..43333 Chlamydophila abortus S26/3 3337922 YP_219467.1 CDS CAB035 NC_004552.2 43378 44046 D Similar to Chlamydia trachomatis hypothetical protein Ct668 SWALL:O84675 (EMBL:AE001337) (223 aa) fasta scores: E(): 6.8e-47, 66.81% id in 223 aa, and to Chlamydia pneumoniae hypothetical protein cpn0708 or cpj0708 or cp0038 SWALL:Q9Z7J7 (EMBL:AE001652) (224 aa) fasta scores: E(): 3.6e-46, 67.55% id in 225 aa, and to Chlamydia muridarum hypothetical protein Tc0039 SWALL:Q9PLQ6 (EMBL:AE002271) (226 aa) fasta scores: E(): 6.9e-44, 63.22% id in 223 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 43378..44046 Chlamydophila abortus S26/3 3337923 YP_219468.1 CDS CAB036 NC_004552.2 44048 45376 D Similar to Chlamydia pneumoniae YopN or YscN or cpn0707 or cp0039 SWALL:Q9Z7J8 (EMBL:AE001652) (442 aa) fasta scores: E(): 5.8e-152, 95.24% id in 442 aa, and to Yersinia enterocolitica probable ATP synthase YscN SWALL:YSCN_YEREN (SWALL:P40290) (439 aa) fasta scores: E(): 8.4e-81, 55.45% id in 422 aa and to Bacillus subtilis flagellum-specific ATP synthase FliI SWALL:FLII_BACSU (SWALL:P23445) (440 aa) fasta scores: E(): 1.5e-75, 52.39% id in 418 aa.; type III secretion system ATPase 44048..45376 Chlamydophila abortus S26/3 3337924 YP_219469.1 CDS CAB037 NC_004552.2 45397 45915 D Similar to Chlamydia pneumoniae hypothetical protein cpn0706 or cpj0706 or cp0040 SWALL:Q9Z7J9 (EMBL:AE001652) (168 aa) fasta scores: E(): 1.2e-37, 88.69% id in 168 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins. CDS contains coiled coil region from residues 22-151.; hypothetical protein 45397..45915 Chlamydophila abortus S26/3 3337925 YP_219470.1 CDS CAB038 NC_004552.2 45906 46751 D Similar to Chlamydia pneumoniae protein cpn0705 or cp0041 or cpj0705 SWALL:Y705_CHLPN (SWALL:Q9Z7K0) (280 aa) fasta scores: E(): 7.2e-51, 57.84% id in 287 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 45906..46751 Chlamydophila abortus S26/3 3337926 YP_219471.1 CDS CAB039 NC_004552.2 46764 47879 D Similar to Chlamydia pneumoniae flagellar motor switch domain/YscQ family FliN or cpn0704 or cp0042 SWALL:Q9Z7K1 (EMBL:AE001652) (371 aa) fasta scores: E(): 2.7e-93, 63.53% id in 373 aa, and to Chlamydia muridarum type III secretion translocase SctQ tc0043 SWALL:Q9PLQ2 (EMBL:AE002271) (373 aa) fasta scores: E(): 1.2e-87, 57.75% id in 374 aa.; type III secretion system protein 46764..47879 Chlamydophila abortus S26/3 3337927 YP_219472.1 CDS CAB040 NC_004552.2 47897 49405 D Similar to Chlamydia pneumoniae serine/threonine-protein kinase cpn0703 or cpj0703 or cp0043 SWALL:Q9Z7K2 (EMBL:AE001652) (502 aa) fasta scores: E(): 3.1e-110, 56.17% id in 502 aa.; serine/threonine-protein kinase 47897..49405 Chlamydophila abortus S26/3 3337928 YP_219473.1 CDS CAB041 NC_004552.2 49402 52128 D Similar to many OutD, general secretion protein, orthologues that are thought to be involved in the recognition of secreted proteins: Chlamydia trachomatis general secretion protein D or ct674 SWALL:O84681 (EMBL:AE001337) (921 aa) fasta scores: E(): 0, 73.52% id in 933 aa. Also similar to several Type III secretion system proteins.; general secretion protein 49402..52128 Chlamydophila abortus S26/3 3337929 YP_219474.1 CDS CAB042 NC_004552.2 52771 53847 R Similar to Chlamydia pneumoniae hypothetical ATP:guanido phosphotransferase cpn0701 or cp0045 or cpj0701 SWALL:Y701_CHLPN (SWALL:Q9Z7K4) (358 aa) fasta scores: E(): 2.6e-98, 66.76% id in 358 aa, and to Chlamydia muridarum hypothetical ATP:guanido phosphotransferase Tc0046 SWALL:Y046_CHLMU (SWALL:Q9PLP9) (356 aa) fasta scores: E(): 3.5e-76, 54.39% id in 353 aa, and to Chlamydia trachomatis hypothetical ATP:guanido phosphotransferase Ct675 SWALL:Y675_CHLTR (SWALL:O84682) (356 aa) fasta scores: E(): 1.4e-73, 54.1% id in 353 aa; ATP:guanido phosphotransferase complement(52771..53847) Chlamydophila abortus S26/3 3337930 YP_219475.1 CDS CAB043 NC_004552.2 53831 54349 R Similar to Chlamydia pneumoniae hypothetical protein cpn0700 or cpj0700 or cp0046 SWALL:Q9Z7K5 (EMBL:AE001652) (171 aa) fasta scores: E(): 1.4e-44, 67.05% id in 170 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein complement(53831..54349) Chlamydophila abortus S26/3 3337931 YP_219476.1 CDS frr NC_004552.2 54754 55296 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(54754..55296) Chlamydophila abortus S26/3 3337932 YP_219477.1 CDS pyrH NC_004552.2 55280 56020 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(55280..56020) Chlamydophila abortus S26/3 3337933 YP_219478.1 CDS tsf NC_004552.2 56036 56884 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(56036..56884) Chlamydophila abortus S26/3 3337934 YP_219479.1 CDS rpsB NC_004552.2 56884 57714 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(56884..57714) Chlamydophila abortus S26/3 3338105 YP_219480.1 CDS ompA NC_004552.2 58095 59264 R Chlamydophila abortus major outer membrane protein precursor OmpA SWALL:AAK00237 (EMBL:AF269256) (389 aa) fasta scores: E(): 1.2e-160, 100% id in 389 aa; major outer membrane protein precursor complement(58095..59264) Chlamydophila abortus S26/3 3337752 YP_219481.1 CDS CAB049 NC_004552.2 59869 63141 D Similar to Chlamydia pneumoniae penicillin-binding protein, cp0052 SWALL:Q9K2E6 (EMBL:AE002167) (1090 aa) fasta scores: E(): 0, 67.76% id in 1089 aa, and to Chlamydia pneumoniae pbp2-transglycolase/transpeptidase pbp2 or cpn0694 SWALL:Q9Z7L0 (EMBL:AE001651) (1090 aa) fasta scores: E(): 0, 67.76% id in 1089 aa; penicillin-binding protein 59869..63141 Chlamydophila abortus S26/3 3337935 YP_219482.1 CDS CAB050 NC_004552.2 63209 64216 D Similar to Chlamydia pneumoniae tpr repeats-ct683 hypothetical protein cpn0693 or cpj0693 or cp0053 SWALL:Q9Z7L1 (EMBL:AE001651) (339 aa) fasta scores: E(): 1.4e-115, 79.16% id in 336 aa, and to Chlamydia muridarum type III secretion chaperone, tc0055 SWALL:Q9PLP4 (EMBL:AE002273) (335 aa) fasta scores: E(): 1.3e-112, 77.67% id in 327 aa; hypothetical protein 63209..64216 Chlamydophila abortus S26/3 3337936 YP_219483.1 CDS CAB051 NC_004552.2 64552 66006 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase 64552..66006 Chlamydophila abortus S26/3 3337679 YP_219484.1 CDS CAB052 NC_004552.2 66010 66777 D Similar to Chlamydia pneumoniae ABC transporter ATPase AbcX or cpn0691 or cp0055 SWALL:Q9Z7L3 (EMBL:AE001651) (256 aa) fasta scores: E(): 2.6e-56, 67.45% id in 255 aa, and to Erwinia chrysanthemi SufC protein SWALL:Q9EXP4 (EMBL:AJ301654) (248 aa) fasta scores: E(): 1.7e-32, 45.71% id in 245 aa; ABC transporter ATP-binding protein 66010..66777 Chlamydophila abortus S26/3 3337680 YP_219485.1 CDS CAB053 NC_004552.2 66792 68018 D Similar to Chlamydia pneumoniae ABC transporter membrane protein cpn0690 or cpj0690 or cp0056 SWALL:Q9Z7L4 (EMBL:AE001651) (415 aa) fasta scores: E(): 4.2e-90, 55.97% id in 402 aa, and to Escherichia coli Sufd protein SWALL:SUFD_ECOLI (SWALL:P77689) (423 aa) fasta scores: E(): 1.9e-10, 26.68% id in 341 aa; ABC transport protein 66792..68018 Chlamydophila abortus S26/3 3337681 YP_219486.1 CDS CAB054 NC_004552.2 68050 69270 D Similar to Chlamydia pneumoniae probable cysteine desulfurase Csd or cpn0689 or cp0057 SWALL:CSD_CHLPN (SWALL:Q9Z7L5) (406 aa) fasta scores: E(): 5.2e-107, 67.66% id in 402 aa, and to Escherichia coli selenocysteine lyase CsdB or SufS SWALL:CSDB_ECOLI (SWALL:P77444) (406 aa) fasta scores: E(): 2.1e-60, 42.14% id in 401 aa; cysteine desulfurase 68050..69270 Chlamydophila abortus S26/3 3337682 YP_219487.1 CDS CAB055 NC_004552.2 69274 70062 R Similar to Chlamydia pneumoniae hypothetical protein cpn0688 or cpj0688 or cp0058 SWALL:Q9Z7L6 (EMBL:AE001651) (252 aa) fasta scores: E(): 9.3e-50, 53.25% id in 246 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein complement(69274..70062) Chlamydophila abortus S26/3 3337683 YP_219488.1 CDS CAB056 NC_004552.2 70256 70909 R Similar to Chlamydia pneumoniae hypothetical protein cpn0687 or cp0059 SWALL:Q9Z7L7 (EMBL:AE001651) (217 aa) fasta scores: E(): 2.7e-47, 58.33% id in 216 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein complement(70256..70909) Chlamydophila abortus S26/3 3337684 YP_219489.1 CDS CAB057 NC_004552.2 71150 71989 D Similar to Chlamydia pneumoniae probable chromosome partitioning protein parB or cpn0684 or cp0062 SWALL:PARB_CHLPN (SWALL:Q9Z7M0) (286 aa) fasta scores: E(): 5.5e-65, 68.72% id in 275 aa.; chromosome partitioning protein 71150..71989 Chlamydophila abortus S26/3 3337685 YP_219490.1 CDS CAB058 NC_004552.2 72028 72996 R Similar to Chlamydia pneumoniae ABC ATPase dipeptide transport DppF_2 or cpn0683 or cp0064 SWALL:Q9Z7M1 (EMBL:AE001650) (324 aa) fasta scores: E(): 5.1e-72, 65.09% id in 318 aa; peptide ABC transport ATP-binding protein complement(72028..72996) Chlamydophila abortus S26/3 3337686 YP_219491.1 CDS dppD NC_004552.2 72989 73951 R Similar to Chlamydia pneumoniae ABC ATPase dipeptide transport dppD or cpn0682 or cp0065 SWALL:Q9Z7M2 (EMBL:AE001650) (324 aa) fasta scores: E(): 3.3e-73, 68.73% id in 323 aa.; peptide ABC transport ATP-binding protein complement(72989..73951) Chlamydophila abortus S26/3 3337652 YP_219492.1 CDS CAB060 NC_004552.2 74005 74679 D Similar to Chlamydia pneumoniae protein cpn0681 or cp0066 or cpj0681 SWALL:Y681_CHLPN (SWALL:Q9Z7M3) (224 aa) fasta scores: E(): 2.2e-70, 77.67% id in 224 aa.; hypothetical protein 74005..74679 Chlamydophila abortus S26/3 3337687 YP_219493.1 CDS CAB061 NC_004552.2 74686 75966 D Similar to Chlamydia pneumoniae phosphate permease cpn0680 or cp0067 or cpj0680 SWALL:Y680_CHLPN (SWALL:Q9Z7M4) (426 aa) fasta scores: E(): 3.4e-130, 79.81% id in 426 aa; phosphate permease 74686..75966 Chlamydophila abortus S26/3 3337688 YP_219494.1 CDS pgk NC_004552.2 76004 77215 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 76004..77215 Chlamydophila abortus S26/3 3337662 YP_219495.1 CDS CAB063 NC_004552.2 77681 79186 D Similar to Chlamydophila caviae hypothetical protein cca00062 SWALL:Q824S7 (EMBL:AE016994) (463 aa) fasta scores: E(): 2.8e-44, 57.2% id in 500 aa and weakly to Chlamydia pneumoniae hypothetical protein cpn0677 or cpj0677 or cp0070 SWALL:Q9Z7M7 (EMBL:AE001650) (382 aa) fasta scores: E(): 5.6e-07, 26.73% id in 318 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 77681..79186 Chlamydophila abortus S26/3 3337689 YP_219496.1 CDS CAB064 NC_004552.2 79200 80372 D Similar to Chlamydia pneumoniae cpn0676 or cpj0676 or cp0071 SWALL:Q9Z7M8 (EMBL:AE001650) (389 aa) fasta scores: E(): 3.6e-38, 35.73% id in 403 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins; hypothetical protein 79200..80372 Chlamydophila abortus S26/3 3337690 YP_219497.1 CDS CAB065 NC_004552.2 80525 81679 D Similar to Chlamydia pneumoniae hypothetical protein cpn0675 or cp0072 or cpj0675 SWALL:Y675_CHLPN (SWALL:Q9Z7M9) (384 aa) fasta scores: E(): 4.2e-69, 49.34% id in 383 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 80525..81679 Chlamydophila abortus S26/3 3337691 YP_219498.1 CDS CAB068 NC_004552.2 82921 83283 R hypothetical protein complement(82921..83283) Chlamydophila abortus S26/3 3337693 YP_219499.1 CDS CAB069 NC_004552.2 83366 84667 R Similar to Chlamydia pneumoniae D-ala-d-ala carboxypeptidase DacF or cpn0672 or cp0075 SWALL:Q9Z7N2 (EMBL:AE001649) (436 aa) fasta scores: E(): 7.5e-106, 61.37% id in 435 aa, and to Bacillus subtilis penicillin-binding protein DacF precursor SWALL:DACF_BACSU (SWALL:P38422) (389 aa) fasta scores: E(): 9.7e-12, 29.23% id in 366 aa; D-alanyl-d-alanine carboxypeptidase complement(83366..84667) Chlamydophila abortus S26/3 3337694 YP_219500.1 CDS CAB071 NC_004552.2 85199 85624 R Similar to Chlamydia pneumoniae sigma regulatory factor-histidine kinase RsbW or cpn0670 SWALL:Q9Z7N4 (EMBL:AE001649) (144 aa) fasta scores: E(): 1.2e-33, 65.71% id in 140 aa and to Bacillus subtilis anti-sigma b factor RsbW SWALL:RSBW_BACSU (SWALL:P17904) (160 aa) fasta scores: E(): 0.0011, 26.66% id in 120 aa; sigma regulatory factor-histidine kinase complement(85199..85624) Chlamydophila abortus S26/3 3337696 YP_219501.1 CDS CAB072 NC_004552.2 85611 86210 R Similar to Chlamydia pneumoniae ct548 hypothetical protein cpn0669 or cpj0669 or cp0078 SWALL:Q9Z7N5 (EMBL:AE001649) (199 aa) fasta scores: E(): 6.7e-46, 64.61% id in 195 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; lipoprotein complement(85611..86210) Chlamydophila abortus S26/3 3337697 YP_219502.1 CDS CAB073 NC_004552.2 86227 87183 R Similar to Chlamydia pneumoniae ct547 hypothetical protein cpn0668 or cpj0668 SWALL:Q9Z7N6 (EMBL:AE001649) (318 aa) fasta scores: E(): 2.4e-85, 69.81% id in 318 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; lipoprotein complement(86227..87183) Chlamydophila abortus S26/3 3337698 YP_219503.1 CDS CAB074 NC_004552.2 87336 88220 D Similar to Chlamydia pneumoniae hypothetical protein cpn0667 or cpj0667 or cp0080 SWALL:Q9Z7N7 (EMBL:AE001649) (294 aa) fasta scores: E(): 4.4e-89, 68.7% id in 294 aa, and to Chlamydia trachomatis predicted omp ct546 SWALL:O84550 (EMBL:AE001325) (289 aa) fasta scores: E(): 4.4e-69, 58.76% id in 291 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 87336..88220 Chlamydophila abortus S26/3 3337699 YP_219504.1 CDS dnaE NC_004552.2 88217 91963 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(88217..91963) Chlamydophila abortus S26/3 3337645 YP_219505.1 CDS CAB076 NC_004552.2 91970 93337 R Similar to Chlamydia trachomatis probable hexose phosphate transport protein ct544 SWALL:UHPT_CHLTR (SWALL:O84548) (456 aa) fasta scores: E(): 1.8e-162, 83.85% id in 452 aa, and to Bacillus subtilis glycerol-3-phosphate transporter GlpT SWALL:GLPT_BACSU (SWALL:P37948) (444 aa) fasta scores: E(): 3.9e-60, 41.11% id in 450 aa; hexose phosphate transport protein complement(91970..93337) Chlamydophila abortus S26/3 3337700 YP_219506.1 CDS CAB077 NC_004552.2 93583 93783 D Similar to Chlamydia pneumoniae hypothetical protein cpn0664 or cpj0664 or cp0083 SWALL:Q9Z7P0 (EMBL:AE001649) (67 aa) fasta scores: E(): 1.3, 32.14% id in 56 aa. No other significant database matches.; hypothetical protein 93583..93783 Chlamydophila abortus S26/3 3337701 YP_219507.1 CDS hisS NC_004552.2 93851 95143 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 93851..95143 Chlamydophila abortus S26/3 3337996 YP_219508.1 CDS aspS NC_004552.2 95118 96872 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 95118..96872 Chlamydophila abortus S26/3 3337265 YP_219509.1 CDS mip NC_004552.2 96948 97715 D Similar to Chlamydophila caviae Mip protein SWALL:Q46176 (EMBL:L39892) (255 aa) fasta scores: E(): 3e-77, 87.05% id in 255 aa, and to Chlamydia pneumoniae peptidyl-prolyl cis-trans isomerase Mip precursor or cpn0661 or cp0086 SWALL:MIP_CHLPN (SWALL:Q9Z7P3) (258 aa) fasta scores: E(): 2.6e-63, 72.58% id in 248 aa; macrophage infectivity potentiator lipoprotein 96948..97715 Chlamydophila abortus S26/3 3337460 YP_219510.1 CDS CAB081 NC_004552.2 97712 98182 D Similar to Chlamydophila caviae SpoU protein SWALL:Q46177 (EMBL:L39892) (156 aa) fasta scores: E(): 3.1e-56, 91.02% id in 156 aa, and to Chlamydia muridarum SpoU rRNA methylase tc0827 SWALL:Q9PJK2 (EMBL:AE002349) (151 aa) fasta scores: E(): 1.2e-40, 67.78% id in 149 aa; rRNA methylase 97712..98182 Chlamydophila abortus S26/3 3337702 YP_219511.1 CDS trxA NC_004552.2 98179 98487 R Similar to Chlamydia psittaci thioredoxin TrxA SWALL:THIO_CHLPS (SWALL:P52227) (102 aa) fasta scores: E(): 6.4e-35, 90.19% id in 102 aa, and to Oenococcus oeni thioredoxin TrxA SWALL:Q8RKA7 (EMBL:X93091) (104 aa) fasta scores: E(): 2.3e-13, 39% id in 100 aa; thioredoxin complement(98179..98487) Chlamydophila abortus S26/3 3338234 YP_219512.1 CDS CAB083 NC_004552.2 99612 100334 D Similar to Chlamydia pneumoniae protein cpn0658 or cp0089 or cpj0658 SWALL:Y658_CHLPN (SWALL:Q9Z7P6) (238 aa) fasta scores: E(): 3e-80, 86.55% id in 238 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 99612..100334 Chlamydophila abortus S26/3 3337703 YP_219513.1 CDS CAB084 NC_004552.2 100313 100774 D Similar to Chlamydia pneumoniae YjeE hypothetical protein cpn0657 or cp0090 SWALL:Q9Z7P7 (EMBL:AE001648) (141 aa) fasta scores: E(): 3.2e-34, 63.12% id in 141 aa.; hypothetical protein 100313..100774 Chlamydophila abortus S26/3 3337704 YP_219514.1 CDS dnaF NC_004552.2 100784 101533 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 100784..101533 Chlamydophila abortus S26/3 3337646 YP_219515.1 CDS CAB086 NC_004552.2 101692 102162 D Similar to Chlamydia pneumoniae acyl-coA thioester hydrolase cpn0654 or cp0093 or cpj0654 SWALL:Y654_CHLPN (SWALL:Q9Z7Q0) (155 aa) fasta scores: E(): 3.9e-58, 89.61% id in 154 aa, and to Bacillus subtilis acyl-coA thioester hydrolase YkhA SWALL:YKHA_BACSU (SWALL:P49851) (179 aa) fasta scores: E(): 2.2e-15, 37.01% id in 154 aa; acyl-CoA thioester hydrolase 101692..102162 Chlamydophila abortus S26/3 3337705 YP_219516.1 CDS lnt NC_004552.2 102170 103795 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 102170..103795 Chlamydophila abortus S26/3 3337706 YP_219517.1 CDS lpxC NC_004552.2 103810 104667 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 103810..104667 Chlamydophila abortus S26/3 3337455 YP_219518.1 CDS fabZ NC_004552.2 104682 105146 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 104682..105146 Chlamydophila abortus S26/3 3338042 YP_219519.1 CDS lpxA NC_004552.2 105156 105995 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 105156..105995 Chlamydophila abortus S26/3 3337454 YP_219520.1 CDS fmt NC_004552.2 105985 106950 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 105985..106950 Chlamydophila abortus S26/3 3338046 YP_219521.1 CDS CAB092 NC_004552.2 107060 108034 D Similar to Chlamydia pneumoniae ct529 hypothetical protein cpn0648 or cpj0648 or cp0099 SWALL:Q9Z7Q6 (EMBL:AE001648) (333 aa) fasta scores: E(): 2.4e-43, 43.47% id in 299 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 107060..108034 Chlamydophila abortus S26/3 3337707 YP_219522.1 CDS rplC NC_004552.2 108328 108993 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 108328..108993 Chlamydophila abortus S26/3 3337477 YP_219523.1 CDS rplD NC_004552.2 109010 109684 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 109010..109684 Chlamydophila abortus S26/3 3337478 YP_219524.1 CDS rplW NC_004552.2 109701 110036 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 109701..110036 Chlamydophila abortus S26/3 3337495 YP_219525.1 CDS rplB NC_004552.2 110058 110912 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 110058..110912 Chlamydophila abortus S26/3 3337476 YP_219526.1 CDS rpsS NC_004552.2 110918 111184 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 110918..111184 Chlamydophila abortus S26/3 3338120 YP_219527.1 CDS rplV NC_004552.2 111203 111538 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 111203..111538 Chlamydophila abortus S26/3 3337494 YP_219528.1 CDS rpsC NC_004552.2 111547 112218 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 111547..112218 Chlamydophila abortus S26/3 3338106 YP_219529.1 CDS rplP NC_004552.2 112248 112661 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 112248..112661 Chlamydophila abortus S26/3 3337488 YP_219530.1 CDS rpmC NC_004552.2 112668 112886 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 112668..112886 Chlamydophila abortus S26/3 3338094 YP_219531.1 CDS rpsQ NC_004552.2 112879 113130 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 112879..113130 Chlamydophila abortus S26/3 3338118 YP_219532.1 CDS rplN NC_004552.2 113165 113533 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 113165..113533 Chlamydophila abortus S26/3 3337486 YP_219533.1 CDS rplX NC_004552.2 113548 113889 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 113548..113889 Chlamydophila abortus S26/3 3337496 YP_219534.1 CDS rplE NC_004552.2 113891 114433 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 113891..114433 Chlamydophila abortus S26/3 3337479 YP_219535.1 CDS rpsH NC_004552.2 114452 114853 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 114452..114853 Chlamydophila abortus S26/3 3338110 YP_219536.1 CDS rplF NC_004552.2 114885 115436 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 114885..115436 Chlamydophila abortus S26/3 3337480 YP_219537.1 CDS rplR NC_004552.2 115459 115830 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 115459..115830 Chlamydophila abortus S26/3 3337490 YP_219538.1 CDS rpsE NC_004552.2 115846 116343 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 115846..116343 Chlamydophila abortus S26/3 3338107 YP_219539.1 CDS rplO NC_004552.2 116336 116770 D late assembly protein; 50S ribosomal protein L15 116336..116770 Chlamydophila abortus S26/3 3337487 YP_219540.1 CDS secY NC_004552.2 116795 118168 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 116795..118168 Chlamydophila abortus S26/3 3338204 YP_219541.1 CDS rpsM NC_004552.2 118224 118592 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 118224..118592 Chlamydophila abortus S26/3 3338114 YP_219542.1 CDS rpsK NC_004552.2 118613 119011 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 118613..119011 Chlamydophila abortus S26/3 3338113 YP_219543.1 CDS rpoA NC_004552.2 119032 120162 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 119032..120162 Chlamydophila abortus S26/3 3338100 YP_219544.1 CDS rplQ NC_004552.2 120171 120599 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 120171..120599 Chlamydophila abortus S26/3 3337489 YP_219545.1 CDS gapA NC_004552.2 120638 121645 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 120638..121645 Chlamydophila abortus S26/3 3338051 YP_219546.1 CDS CAB116 NC_004552.2 121658 122479 D Similar to Chlamydia pneumoniae protein cpn0623/cp0124/cpj0623 cpn0623 or cp0124 or cpj0623 SWALL:Y623_CHLPN (SWALL:Q9Z7T1) (277 aa) fasta scores: E(): 6.7e-61, 69.45% id in 275 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 121658..122479 Chlamydophila abortus S26/3 3337708 YP_219547.1 CDS CAB117 NC_004552.2 122987 123889 D Similar to Chlamydia pneumoniae ct503 hypothetical protein cpn0622 or cpj0622 or cp0125 SWALL:Q9Z7T2 (EMBL:AE001646) (320 aa) fasta scores: E(): 2.7e-31, 45.72% id in 304 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 122987..123889 Chlamydophila abortus S26/3 3337709 YP_219548.2 CDS ruvC NC_004552.2 123997 124503 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 123997..124503 Chlamydophila abortus S26/3 3338197 YP_219549.2 CDS ruvA NC_004552.2 124503 125126 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 124503..125126 Chlamydophila abortus S26/3 3338123 YP_219550.1 CDS ndk NC_004552.2 125197 125622 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 125197..125622 Chlamydophila abortus S26/3 3337465 YP_219551.1 CDS CAB121 NC_004552.2 125635 126336 R Similar to Chlamydia pneumoniae lipoate-protein ligase a lpla_2 or cpn0618 or cp0129 SWALL:Q9Z7T6 (EMBL:AE001646) (235 aa) fasta scores: E(): 1.1e-59, 59.82% id in 234 aa; hypothetical protein complement(125635..126336) Chlamydophila abortus S26/3 3337710 YP_219552.1 CDS gidA NC_004552.2 126323 128158 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(126323..128158) Chlamydophila abortus S26/3 3338055 YP_219553.1 CDS dnaB NC_004552.2 128620 130065 R unwinds double stranded DNA; replicative DNA helicase complement(128620..130065) Chlamydophila abortus S26/3 3337644 YP_219554.1 CDS CAB124 NC_004552.2 130703 131209 D Similar to Chlamydia pneumoniae glycerol-3-p phosphatidyltransferase PgsA_1 or cpn0615 or cp0132 SWALL:Q9Z7T9 (EMBL:AE001646) (168 aa) fasta scores: E(): 6.8e-50, 74.25% id in 167 aa and to Rhodobacter sphaeroides phosphatidylglycerol phosphate synthase PgsA; alcohol phosphatidyltransferase 130703..131209 Chlamydophila abortus S26/3 3337762 YP_219555.1 CDS npt2 NC_004552.2 131446 133095 D Similar to Chlamydia trachomatis nucleoside triphosphate transport protein 2 npt2 SWALL:Q9X9D2 (EMBL:AJ010587) (540 aa) fasta scores: E(): 2.8e-69, 65.2% id in 549 aa; nucleoside triphosphate transport protein 2 131446..133095 Chlamydophila abortus S26/3 3337466 YP_219556.1 CDS sohB NC_004552.2 133198 134205 D Similar to Chlamydia pneumoniae protease sohB or cpn0613 or cp0134 SWALL:Q9Z7U1 (EMBL:AE001645) (333 aa) fasta scores: E(): 1.4e-87, 69.9% id in 319 aa; exported protease 133198..134205 Chlamydophila abortus S26/3 3338208 YP_219557.1 CDS polA NC_004552.2 134233 136842 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 134233..136842 Chlamydophila abortus S26/3 3338066 YP_219558.1 CDS coaE NC_004552.2 136827 137444 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 136827..137444 Chlamydophila abortus S26/3 3337763 YP_219559.1 CDS rho NC_004552.2 137441 138835 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 137441..138835 Chlamydophila abortus S26/3 3338082 YP_219560.1 CDS CAB130 NC_004552.2 139101 139361 R Similar to Chlamydia pneumoniae ct490 hypothetical protein cpn0609 or cpj0609 or cp0138 SWALL:Q9Z7U5 (EMBL:AE001645) (94 aa) fasta scores: E(): 1.2e-08, 44.18% id in 86 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(139101..139361) Chlamydophila abortus S26/3 3337764 YP_219561.2 CDS pyrE NC_004552.2 139423 140043 D catalyzes the formation of orotidine monophosphate from 5-phosphoribosyl-1-pyrophosphate and orotate; orotate phosphoribosyltransferase 139423..140043 Chlamydophila abortus S26/3 3338072 YP_219562.1 CDS glgC NC_004552.2 140157 141509 D Similar to Chlamydia trachomatis glucose-1-p adenyltransferase GlgC or ct489 SWALL:O84496 (EMBL:AE001322) (441 aa) fasta scores: E(): 1.3e-138, 75.87% id in 427 aa, and to Solanum tuberosum glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor SWALL:GLGS_SOLTU (SWALL:P23509) (521 aa) fasta scores: E(): 3.4e-53, 35.38% id in 438 aa; glucose-1-phosphate adenyltransferase 140157..141509 Chlamydophila abortus S26/3 3338057 YP_219563.1 CDS CAB133 NC_004552.2 141624 142367 D Similar to Chlamydia pneumoniae ct488 hypothetical protein cpn0606 or cpj0606 or cp0141 SWALL:Q9Z7U8 (EMBL:AE001645) (246 aa) fasta scores: E(): 1.7e-71, 68.01% id in 247 aa; hypothetical protein 141624..142367 Chlamydophila abortus S26/3 3337765 YP_219564.1 CDS CAB134 NC_004552.2 142364 142927 D Similar to Chlamydia trachomatis methylase yhhf or ct487 SWALL:O84494 (EMBL:AE001322) (190 aa) fasta scores: E(): 7.5e-45, 66.31% id in 187 aa; hypothetical protein 142364..142927 Chlamydophila abortus S26/3 3337766 YP_219565.1 CDS CAB135 NC_004552.2 143128 143880 D Similar to Chlamydia pneumoniae glutamine binding protein FliY or cpn0604 or cp0143 SWALL:Q9Z7V0 (EMBL:AE001645) (250 aa) fasta scores: E(): 3.2e-73, 74.8% id in 250 aa; transport lipoprotein 143128..143880 Chlamydophila abortus S26/3 3337767 YP_219566.1 CDS hemH NC_004552.2 143885 144841 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(143885..144841) Chlamydophila abortus S26/3 3337994 YP_219567.1 CDS CAB137 NC_004552.2 144935 145942 D Similar to Chlamydia pneumoniae ct484 hypothetical protein cpn0602 or cpj0602 or cp0145 SWALL:Q9Z7V2 (EMBL:AE001645) (334 aa) fasta scores: E(): 3.4e-103, 78.32% id in 323 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 144935..145942 Chlamydophila abortus S26/3 3337768 YP_219568.1 CDS CAB138 NC_004552.2 145996 146319 D Similar to Chlamydia pneumoniae ct483 hypothetical protein cpn0601 or cpj0601 or cp0146 SWALL:Q9Z7V3 (EMBL:AE001645) (106 aa) fasta scores: E(): 2e-17, 54% id in 100 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 145996..146319 Chlamydophila abortus S26/3 3337769 YP_219569.1 CDS CAB139 NC_004552.2 147525 147725 D Similar to Chlamydophila caviae hypothetical protein cca00141 SWALL:Q824K4 (EMBL:AE016994) (54 aa) fasta scores: E(): 8.9e-06, 52.83% id in 53 aa. Note the differing N-termini. Also weakly similar to Chlamydia pneumoniae hypothetical protein Cp0147 cp0147 SWALL:Q9K2D5 (EMBL:AE002176) (65 aa) fasta scores: E(): 4.2, 35.59% id in 59 aa; lipoprotein 147525..147725 Chlamydophila abortus S26/3 3337770 YP_219570.1 CDS CAB140 NC_004552.2 148659 150776 D Similar to Chlamydia pneumoniae oligopeptide binding lipoprotein AppA_5 or cpn0599 or cp0149 SWALL:Q9Z7V5 (EMBL:AE001644) (707 aa) fasta scores: E(): 0, 71.65% id in 709 aa, and to Bacillus subtilis oligopeptide-binding protein AppA precursor appA SWALL:APPA_BACSU (SWALL:P42061) (543 aa) fasta scores: E(): 1.3e-18, 33.08% id in 263 aa, and to Escherichia coli nickel-binding periplasmic protein precursor nika or b3476 SWALL:NIKA_ECOLI (SWALL:P33590) (524 aa) fasta scores: E(): 3.2e-08, 23.68% id in 380 aa; transport protein 148659..150776 Chlamydophila abortus S26/3 3337771 YP_219571.1 CDS CAB141 NC_004552.2 150758 152227 D Similar to Chlamydia pneumoniae oligopeptide permease OppB_2 or cpn0598 or cp0150 SWALL:Q9Z7V6 (EMBL:AE001644) (493 aa) fasta scores: E(): 3.8e-147, 71.66% id in 494 aa, and to Escherichia coli, and Escherichia coli O157:H7 dipeptide transport system permease DppB SWALL:DPPB_ECOLI (SWALL:P37316) (339 aa) fasta scores: E(): 1.3e-17, 29.13% id in 278 aa; transport protein 150758..152227 Chlamydophila abortus S26/3 3337772 YP_219572.1 CDS CAB142 NC_004552.2 152229 153962 D Similar to Chlamydia pneumoniae oligopeptide permease OppC_2 or cpn0597 or cp0151 SWALL:Q9Z7V7 (EMBL:AE001644) (579 aa) fasta scores: E(): 1.7e-158, 67.64% id in 578 aa and to Escherichia coli, and Escherichia coli O157:H7 oligopeptide transport system permease OppC SWALL:OPPC_ECOLI (SWALL:P77664) (302 aa) fasta scores: E(): 8e-20, 32.27% id in 251 aa; transport protein 152229..153962 Chlamydophila abortus S26/3 3337773 YP_219573.1 CDS ada NC_004552.2 153959 154486 R Similar to Chlamydia pneumoniae methyltransferase ada or cpn0596 or cp0152 SWALL:Q9Z7V8 (EMBL:AE001644) (173 aa) fasta scores: E(): 6.7e-45, 67.06% id in 167 aa, and to Bacillus subtilis methylated-DNA--protein-cysteine methyltransferase adaB SWALL:ADAB_BACSU (SWALL:P19220) (179 aa) fasta scores: E(): 1.5e-05, 39.5% id in 81 aa; DNA methyltransferase complement(153959..154486) Chlamydophila abortus S26/3 3337621 YP_219574.1 CDS CAB144 NC_004552.2 154498 155469 R Similar to Chlamydia pneumoniae ct476 hypothetical protein cpn0595 or cpj0595 or cp0153 SWALL:Q9Z7V9 (EMBL:AE001644) (323 aa) fasta scores: E(): 3.9e-104, 75.85% id in 323 aa; lipoprotein complement(154498..155469) Chlamydophila abortus S26/3 3337774 YP_219575.1 CDS pheT NC_004552.2 155466 157850 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(155466..157850) Chlamydophila abortus S26/3 3337665 YP_219576.1 CDS CAB146 NC_004552.2 157958 159043 D Similar to Chlamydia pneumoniae hypothetical protein cpn0593/cp0155/cpj0593 cpn0593 or cp0155 or cpj0593 SWALL:Y593_CHLPN (SWALL:Q9Z7W1) (362 aa) fasta scores: E(): 1.9e-78, 54.27% id in 363 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 157958..159043 Chlamydophila abortus S26/3 3337775 YP_219577.1 CDS CAB147 NC_004552.2 158967 159278 R Similar to Chlamydia pneumoniae hypothetical protein cpn0592/cp0156/cpj0592 cpn0592 or cp0156 or cpj0592 SWALL:Y592_CHLPN (SWALL:Q9Z7W2) (103 aa) fasta scores: E(): 3.7e-25, 62.37% id in 101 aa; hypothetical protein complement(158967..159278) Chlamydophila abortus S26/3 3337776 YP_219578.1 CDS CAB148 NC_004552.2 159268 160062 R Similar to Chlamydia pneumoniae yage family yage or cpn0591 or cp0157 SWALL:Q9Z7W3 (EMBL:AE001643) (216 aa) fasta scores: E(): 2.9e-73, 84.57% id in 214 aa; hypothetical protein complement(159268..160062) Chlamydophila abortus S26/3 3337777 YP_219579.1 CDS CAB149 NC_004552.2 160344 160934 D Similar to Chlamydia muridarum hypothetical protein Tc0756 tc0756 SWALL:Q9PJS2 (EMBL:AE002343) (209 aa) fasta scores: E(): 5.4e-47, 58.11% id in 191 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; lipoprotein 160344..160934 Chlamydophila abortus S26/3 3337778 YP_219580.1 CDS recO NC_004552.2 160908 161633 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(160908..161633) Chlamydophila abortus S26/3 3338080 YP_219581.1 CDS CAB151 NC_004552.2 161638 162222 R Similar to Chlamydia pneumoniae ct469 hypothetical protein cpn0588 or cpj0588 or cp0160 SWALL:Q9Z7W6 (EMBL:AE001643) (181 aa) fasta scores: E(): 3.6e-40, 58.91% id in 185 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(161638..162222) Chlamydophila abortus S26/3 3337779 YP_219582.1 CDS CAB152 NC_004552.2 162167 162850 R Similar to Chlamydia pneumoniae hypothetical protein YvyD or cpn0587 or cp0161 SWALL:Q9Z7W7 (EMBL:AE001643) (228 aa) fasta scores: E(): 1.7e-40, 52.65% id in 226 aa. No other significant database matches; hypothetical protein complement(162167..162850) Chlamydophila abortus S26/3 3337780 YP_219583.1 CDS CAB153 NC_004552.2 163150 164310 R Similar to Chlamydia pneumoniae sigma-54 dependent response regulator cp0162 SWALL:Q9K2D1 (EMBL:AE002177) (394 aa) fasta scores: E(): 6.5e-119, 77.97% id in 386 aa; Fis family transcriptional regulator complement(163150..164310) Chlamydophila abortus S26/3 3337781 YP_219584.1 CDS CAB154 NC_004552.2 164494 167532 D hypothetical protein 164494..167532 Chlamydophila abortus S26/3 3337782 YP_219585.1 CDS atoS NC_004552.2 167548 168600 R Similar to Chlamydia trachomatis 2-component regulatory system-sensor histidine kinase atos or ct467 SWALL:O84473 (EMBL:AE001320) (352 aa) fasta scores: E(): 4.9e-85, 64.82% id in 344 aa; 2-component regulatory system-sensor histidine kinase complement(167548..168600) Chlamydophila abortus S26/3 3337266 YP_219586.1 CDS CAB156 NC_004552.2 168581 168970 R Similar to Chlamydia pneumoniae ct466 hypothetical protein cpn0583 or cpj0583 or cp0165 SWALL:Q9Z7X1 (EMBL:AE001643) (106 aa) fasta scores: E(): 1.4e-23, 72.38% id in 105 aa. Only significant database matches are to predicted Chlamydiaceae proteins. Note the differing N-termini and the alternative possible translational start sites at codon 19 and 22; hypothetical protein complement(168581..168970) Chlamydophila abortus S26/3 3337783 YP_219587.1 CDS CAB157 NC_004552.2 169139 169804 R Similar to Chlamydia pneumoniae ct465 hypothetical protein cpn0582 or cpj0582 or cp0166 SWALL:Q9Z7X2 (EMBL:AE001642) (225 aa) fasta scores: E(): 3.1e-28, 42.58% id in 209 aa.Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(169139..169804) Chlamydophila abortus S26/3 3337784 YP_219588.1 CDS CAB158 NC_004552.2 169965 170654 D Similar to Chlamydia pneumoniae phosphoglycolate phosphatase cpn0581 or cpj0581 SWALL:Q9Z7X3 (EMBL:AE001642) (230 aa) fasta scores: E(): 2.3e-44, 50.66% id in 227 aa, and to Chlamydia pneumoniae hydrolase, haloacid dehalogenase-like family cp0167 SWALL:Q9K2C9 (EMBL:AE002178) (244 aa) fasta scores: E(): 2.5e-44, 50.66% id in 227 aa; hypothetical protein 169965..170654 Chlamydophila abortus S26/3 3337785 YP_219589.1 CDS truA NC_004552.2 170600 171406 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(170600..171406) Chlamydophila abortus S26/3 3338232 YP_219590.1 CDS ispD NC_004552.2 171403 172056 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(171403..172056) Chlamydophila abortus S26/3 3337434 YP_219591.1 CDS CAB161 NC_004552.2 172031 173005 R Similar to Chlamydia pneumoniae hypothetical protein cpn0578/cp0170/cpj0578 precursor cpn0578 or cp0170 or cpj0578 SWALL:Y578_CHLPN (SWALL:Q9Z7X6) (320 aa) fasta scores: E(): 6.5e-86, 62.92% id in 321 aa; hypothetical protein complement(172031..173005) Chlamydophila abortus S26/3 3337786 YP_219592.1 CDS CAB162 NC_004552.2 173077 173340 R Similar to Chlamydia pneumoniae SwiB cpn0577 or cpj0577 or cp0171 SWALL:Q9Z7X7 (EMBL:AE001642) (87 aa) fasta scores: E(): 1.1e-26, 85.05% id in 87 aa, and to Chlamydia muridarum hypothetical protein Tc0745 SWALL:Q9PJT3 (EMBL:AE002343) (86 aa) fasta scores: E(): 7.3e-25, 78.16% id in 87 aa; hypothetical protein complement(173077..173340) Chlamydophila abortus S26/3 3337787 YP_219593.1 CDS prfB NC_004552.2 173622 174729 D recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 join(173622..173690,173692..174729) Chlamydophila abortus S26/3 3338068 YP_219594.1 CDS CAB164 NC_004552.2 174726 175238 D Similar to Chlamydia pneumoniae amino group acetyl transferase YhhY or cpn0575 or cp0174 SWALL:Q9Z7X8 (EMBL:AE001642) (171 aa) fasta scores: E(): 1.8e-56, 78.57% id in 168 aa; transferase 174726..175238 Chlamydophila abortus S26/3 3337788 YP_219595.1 CDS CAB166 NC_004552.2 175817 176533 D Similar to Chlamydia muridarum hypothetical protein Tc0742 tc0742 SWALL:Y742_CHLMU (SWALL:Q9PJT5) (238 aa) fasta scores: E(): 1.4e-79, 85.65% id in 237 aa; hypothetical protein 175817..176533 Chlamydophila abortus S26/3 3337790 YP_219596.1 CDS CAB167 NC_004552.2 176574 179186 R Similar to Chlamydia pneumoniae protein cpn0572 or cp0177 or cpj0572 SWALL:Y572_CHLPN (SWALL:Q9Z7Y1) (755 aa) fasta scores: E(): 2.5e-77, 40.89% id in 802 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein complement(176574..179186) Chlamydophila abortus S26/3 3337791 YP_219597.1 CDS CAB168 NC_004552.2 179419 180753 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 179419..180753 Chlamydophila abortus S26/3 3337792 YP_219598.1 CDS argS NC_004552.2 180756 182444 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(180756..182444) Chlamydophila abortus S26/3 3337258 YP_219599.1 CDS CAB170 NC_004552.2 182445 183092 R Similar to Chlamydia pneumoniae glycerol-3-p acyltransferase PlsC or cpn0569 or cp0180 SWALL:Q9Z7Y4 (EMBL:AE001641) (212 aa) fasta scores: E(): 1e-58, 61.39% id in 215 aa; hypothetical protein complement(182445..183092) Chlamydophila abortus S26/3 3337529 YP_219600.1 CDS cmk NC_004552.2 183089 183739 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(183089..183739) Chlamydophila abortus S26/3 3337637 YP_219601.1 CDS CAB172 NC_004552.2 183736 184656 R Similar to Chlamydia pneumoniae phosphatidate cytidylyltransferase CdsA or cpn0567 or cp0182 SWALL:CDSA_CHLPN (SWALL:Q9Z7Y6) (308 aa) fasta scores: E(): 1.6e-86, 72.96% id in 307 aa; hypothetical protein complement(183736..184656) Chlamydophila abortus S26/3 3337530 YP_219602.1 CDS CAB173 NC_004552.2 184659 185411 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(184659..185411) Chlamydophila abortus S26/3 3337531 YP_219603.1 CDS CAB174 NC_004552.2 185994 187106 D Similar to Chlamydia pneumoniae ct449 hypothetical protein cpn0565 or cpj0565 or cp0185 SWALL:Q9Z7Y8 (EMBL:AE001641) (366 aa) fasta scores: E(): 2e-30, 32.05% id in 365 aa. Only significant database prokaryotic matches are to predicted Chlamydiaceae proteins.; hypothetical protein 185994..187106 Chlamydophila abortus S26/3 3337532 YP_219604.1 CDS CAB175 NC_004552.2 187355 191569 D part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; in these organisms there is an unknown N-terminal domain; bifunctional preprotein translocase subunit SecD/SecF 187355..191569 Chlamydophila abortus S26/3 3337533 YP_219605.1 CDS CAB176 NC_004552.2 191662 193434 D Similar to Chlamydia psittaci ssdna-specific exonuclease RecJ SWALL:P94659 (EMBL:AF058396) (519 aa) fasta scores: E(): 6.2e-178, 90.17% id in 519 aa, and to Chlamydia pneumoniae ssdna exonuclease RecJ or cpn0563 or cp0187 SWALL:Q9Z7Z0 (EMBL:AE001641) (588 aa) fasta scores: E(): 3.2e-159, 72.06% id in 580 aa; exonuclease 191662..193434 Chlamydophila abortus S26/3 3337534 YP_219606.1 CDS CAB177 NC_004552.2 193885 195033 D Similar to Chlamydophila caviae hypothetical 43.0 kDa protein SWALL:P94660 (EMBL:U41759) (384 aa) fasta scores: E(): 5.8e-113, 68.96% id in 377 aa, and to Chlamydia pneumoniae chlps 43 kDa protein homolog_1 cpj0562 or cp0188 SWALL:Q9JS10 (EMBL:AE002180) (373 aa) fasta scores: E(): 2.6e-79, 52.23% id in 358 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 193885..195033 Chlamydophila abortus S26/3 3337535 YP_219607.1 CDS CAB178 NC_004552.2 195654 196196 D Similar to Chlamydia psittaci early upstream open reading frame SWALL:EUO1_CHLPS (SWALL:Q06566) (182 aa) fasta scores: E(): 2.7e-64, 96.7% id in 182 aa, and to Chlamydia pneumoniae hypothetical protein cpn0561/cp0189/cpj0561 cpn0561 or cp0189 or cpj0561 SWALL:Y561_CHLPN (SWALL:Q9Z7Z2) (178 aa) fasta scores: E(): 1.1e-45, 76.68% id in 163 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 195654..196196 Chlamydophila abortus S26/3 3337536 YP_219608.1 CDS gltX NC_004552.2 196465 197982 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 196465..197982 Chlamydophila abortus S26/3 3337734 YP_219609.1 CDS omlA NC_004552.2 198658 198921 D Highly similar to previously sequenced Chlamydophila abortus small cysteine-rich outer membrane lipoprotein OmlA SWALL:Q9AIS8 (EMBL:AF240773) (87 aa) fasta scores: E(): 5.2e-30, 98.85% id in 87 aa, and to Chlamydophila caviae outer membrane protein 3 Omp3 SWALL:P94663 (EMBL:U41759) (88 aa) fasta scores: E(): 8.4e-24, 80.68% id in 88 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; outer membrane lipoprotein 198658..198921 Chlamydophila abortus S26/3 3337751 YP_219610.1 CDS cmcB NC_004552.2 199087 200760 D Previously sequenced as Chlamydophila abortus 60 kDa cysteine-rich membrane complex protein CmcB SWALL:Q9AIS7 (EMBL:AF240773) (557 aa) fasta scores: E(): 0, 100% id in 557 aa, and highly similar to Chlamydia psittaci 60 kDa outer membrane protein precursor Omcb or Mmp2 or EnvB SWALL:OM6_CHLPS (SWALL:P23701) (557 aa) fasta scores: E(): 4.8e-217, 97.3% id in 557 aa, and to Chlamydia pneumoniae 60 kDa outer membrane protein precursor Omcb or Omp2 or cpn0557 or cp0195 SWALL:OM6_CHLPN (SWALL:P23700) (556 aa) fasta scores: E(): 1e-189, 84.38% id in 557 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 199087..200760 Chlamydophila abortus S26/3 3337636 YP_219611.1 CDS srp NC_004552.2 200971 201453 D Previously sequenced as Chlamydophila abortus sulfur-rich protein Srp SWALL:Q9AIS6 (EMBL:AF240773) (134 aa) fasta scores: E(): 5e-47, 100% id in 128 aa, and similar to Chlamydophila caviae hypothetical sulfur-rich protein srP SWALL:P94665 (EMBL:U41759) (160 aa) fasta scores: E(): 3.6e-46, 81.5% id in 146 aa, and to Chlamydia psittaci sulfur-rich protein Srp SWALL:SRP_CHLPS (SWALL:P28164) (134 aa) fasta scores: E(): 1.1e-42, 86.61% id in 127 aa, and to Chlamydia pneumoniae 15 kDa cysteine-rich protein crpa or cpn0556 or cp0196 SWALL:Q9Z7Z6 (EMBL:AE001640) (196 aa) fasta scores: E(): 2.9e-19, 39.75% id in 161 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; Previously sequenced as Chlamydophila abortus sulfur-rich protein srP SWALL:Q9AIS6 (EMBL:AF240773) (134 aa) fasta scores: E(): 5e-47, 100% id in 128 aa; sulfur-rich membrane protein 200971..201453 Chlamydophila abortus S26/3 3338209 YP_219612.1 CDS CAB183 NC_004552.2 201503 203458 R Similar to Chlamydia pneumoniae tail-specific protease tsp or cpn0555 or cp0197 SWALL:Q9Z7Z7 (EMBL:AE001640) (648 aa) fasta scores: E(): 5.6e-177, 69.45% id in 645 aa, and to Escherichia coli O157:H7 carboxy-terminal protease for penicillin-binding protein 3 prc or z2877 or ecs2540 SWALL:Q8XCM5 (EMBL:AE005405) (682 aa) fasta scores: E(): 2.4e-31, 30.69% id in 430 aa; exported protease complement(201503..203458) Chlamydophila abortus S26/3 3337537 YP_219613.1 CDS CAB184 NC_004552.2 203586 203864 R Similar to Chlamydia pneumoniae ct440 hypothetical protein cpn0554 or cpj0554 or cp0198 SWALL:Q9Z7Z8 (EMBL:AE001640) (96 aa) fasta scores: E(): 9.2e-15, 64.93% id in 77 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein complement(203586..203864) Chlamydophila abortus S26/3 3337538 YP_219614.1 CDS CAB185 NC_004552.2 203965 204915 D Similar to Chlamydia pneumoniae hypothetical protein cpn0553 cpn0553 or cpj0553 or cp0199 SWALL:Q9Z7Z9 (EMBL:AE001639) (312 aa) fasta scores: E(): 1.2e-44, 41.39% id in 302 aa.; hypothetical protein 203965..204915 Chlamydophila abortus S26/3 3337439 YP_219615.1 CDS rpsL NC_004552.2 205111 205482 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 205111..205482 Chlamydophila abortus S26/3 3337440 YP_219616.1 CDS rpsG NC_004552.2 205526 205999 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 205526..205999 Chlamydophila abortus S26/3 3338109 YP_219617.1 CDS CAB188 NC_004552.2 206041 208125 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 206041..208125 Chlamydophila abortus S26/3 3337441 YP_219618.2 CDS rpsJ NC_004552.2 208133 208450 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 208133..208450 Chlamydophila abortus S26/3 3338112 YP_219619.1 CDS CAB190 NC_004552.2 208468 209517 D Similar to Chlamydia pneumoniae sulfite reductase CysJ or cpn0548 or cp0204 SWALL:Q9Z804 (EMBL:AE001639) (347 aa) fasta scores: E(): 9.2e-79, 56.85% id in 350 aa, and to Escherichia coli sulfite reductase [NADPH] flavoprotein alpha-component CysJ or b2764 SWALL:CYSJ_ECOLI (SWALL:P38038) (598 aa) fasta scores: E(): 2e-19, 30.34% id in 346 aa, and to Physarum polycephalum nitric oxide synthase form b NosB SWALL:Q968Y5 (EMBL:AF145040) (1046 aa) fasta scores: E(): 3.1e-19, 29.85% id in 355 aa; oxidoreductase 208468..209517 Chlamydophila abortus S26/3 3337442 YP_219620.1 CDS ispF NC_004552.2 209514 210044 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(209514..210044) Chlamydophila abortus S26/3 3337443 YP_219621.1 CDS rplU NC_004552.2 211069 211389 D Similar to Chlamydia trachomatis 50S ribosomal protein l21 RplU or rl21 or ct420 SWALL:RL21_CHLTR (SWALL:O84425) (107 aa) fasta scores: E(): 4.3e-29, 75.7% id in 107 aa, and to Escherichia coli, and Escherichia coli O157:H7 50S ribosomal protein l21 RplU SWALL:RL21_ECOLI (SWALL:P02422) (103 aa) fasta scores: E(): 2.6e-12, 41.58% id in 101 aa; 50S ribosomal protein L21 211069..211389 Chlamydophila abortus S26/3 3337493 YP_219622.1 CDS rpmA NC_004552.2 211420 211668 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 211420..211668 Chlamydophila abortus S26/3 3338036 YP_219623.1 CDS obgE NC_004552.2 211784 212791 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 211784..212791 Chlamydophila abortus S26/3 3337612 YP_219624.1 CDS CAB195 NC_004552.2 212689 213582 R Similar to Chlamydia pneumoniae probable metal transport system membrane protein cpn0543 or cp0209 or cpj0543 SWALL:Y543_CHLPN (SWALL:Q9Z809) (293 aa) fasta scores: E(): 1.9e-82, 78.21% id in 280 aa, and to Listeria monocytogenes hydrophobic membrane protein ZurM SWALL:Q9XDA5 (EMBL:AF104349) (295 aa) fasta scores: E(): 2.6e-17, 23.77% id in 265 aa; transport protein complement(212689..213582) Chlamydophila abortus S26/3 3337613 YP_219625.1 CDS CAB196 NC_004552.2 213579 214298 R Similar to Chlamydia muridarum probable metal transport system ATP-binding protein Tc0697 SWALL:Y697_CHLMU (SWALL:Q9PJX9) (236 aa) fasta scores: E(): 9.5e-55, 64.13% id in 237 aa, and to Listeria monocytogenes zinc uptake system ATP-binding protein ZurA SWALL:ZURA_LISMO (SWALL:Q9XDA6) (257 aa) fasta scores: E(): 6.6e-18, 36.81% id in 220 aa; ATP-binding ABC transport protein complement(213579..214298) Chlamydophila abortus S26/3 3337614 YP_219626.1 CDS CAB197 NC_004552.2 214295 215131 R Similar to Chlamydia pneumoniae periplasmic metal-binding protein precursor cpn0541 or cp0211 or cpj0541 SWALL:Y541_CHLPN (SWALL:Q9Z811) (278 aa) fasta scores: E(): 1.4e-67, 58.27% id in 278 aa, and to Bacillus subtilis manganese-binding lipoprotein MntA precursor SWALL:MNTA_BACSU (SWALL:O34385) (306 aa) fasta scores: E(): 1.6e-05, 26.69% id in 206 aa; transport poprotein complement(214295..215131) Chlamydophila abortus S26/3 3337615 YP_219627.1 CDS thiE NC_004552.2 215725 216363 D Similar to Bacillus subtilis thiamine-phosphate pyrophosphorylase ThiE or ThiC SWALL:THIE_BACSU (SWALL:P39594) (222 aa) fasta scores: E(): 1.4e-14, 34.61% id in 182 aa, and to Clostridium acetobutylicum thiamine-phosphate pyrophosphorylase ThiE SWALL:Q97LQ9 (EMBL:AE007564) (211 aa) fasta scores: E(): 3e-21, 37.07% id in 205 aa. No database matches are to predicted Chlamydiaceae proteins.; thiamine-phosphate pyrophosphorylase 215725..216363 Chlamydophila abortus S26/3 3338215 YP_219628.1 CDS thiM NC_004552.2 216357 217145 D Similar to Escherichia coli hydroxyethylthiazole kinase ThiM SWALL:THIM_ECOLI (SWALL:P76423) (262 aa) fasta scores: E(): 1.1e-26, 36.62% id in 243 aa. No database matches are to predicted Chlamydiaceae proteins.; hydroxyethylthiazole kinase 216357..217145 Chlamydophila abortus S26/3 3338216 YP_219629.1 CDS pmp1B NC_004552.2 217265 222631 R Similar to Chlamydia muridarum probable outer membrane protein PmpB precursor or tc0694 SWALL:PMPB_CHLMU (SWALL:Q9PJY2) (1672 aa) fasta scores: E(): 3.1e-148, 44.7% id in 1859 aa, and to Chlamydia trachomatis probable outer membrane protein PmpB precursor or ct413 SWALL:PMPB_CHLTR (SWALL:O84418) (1754 aa) fasta scores: E(): 1.5e-132, 42.62% id in 1933 aa, and to Chlamydia pneumoniae probable outer membrane protein Pmp20 precursor or cpn0540 or cp0212 SWALL:PM20_CHLPN (SWALL:Q9Z812) (1723 aa) fasta scores: E(): 2.5e-120, 44.59% id in 1868 aa, and to Chlamydia psittaci polymorphic membrane protein SWALL:Q8VL57 (EMBL:AF243416) (601 aa) fasta scores: E(): 1.6e-14, 27.06% id in 665 aa, and to Chlamydophila abortus Pomp91b precursor SWALL:P71133 (EMBL:U65943) (846 aa) fasta scores: E(): 7.6e-12, 26.18% id in 905 aa; hypothetical protein complement(217265..222631) Chlamydophila abortus S26/3 3337675 YP_219630.1 CDS pmp2A NC_004552.2 222833 225634 R Similar to Chlamydia pneumoniae probable outer membrane protein Pmp19 precursor or cpn0539 or cp0213 SWALL:PM19_CHLPN (SWALL:Q9Z813) (947 aa) fasta scores: E(): 2.5e-83, 47.68% id in 950 aa, and to Chlamydia muridarum probable outer membrane protein PmpA precursor or tc0693 SWALL:PMPA_CHLMU (SWALL:Q9PJY3) (976 aa) fasta scores: E(): 1.4e-78, 38.84% id in 937 aa, and to Chlamydia trachomatis probable outer membrane protein PmpA precursor or ct412 SWALL:PMPA_CHLTR (SWALL:O84417) (975 aa) fasta scores: E(): 1e-74, 38.95% id in 937 aa, and to Chlamydophila abortus Pomp91a SWALL:P71132 (EMBL:U65942) (847 aa) fasta scores: E(): 1.2e-29, 26.44% id in 779 aa, and to Chlamydia psittaci PomP90b precursor SWALL:P77792 (EMBL:U65943) (839 aa) fasta scores: E(): 1.6e-29, 25.09% id in 837 aa; hypothetical protein complement(222833..225634) Chlamydophila abortus S26/3 3337676 YP_219631.1 CDS CAB202 NC_004552.2 225855 226157 R Similar to Chlamydia pneumoniae ct814 hypothetical protein cpn0538 or cpj0538 or cp0214 SWALL:Q9Z814 (EMBL:AE001638) (100 aa) fasta scores: E(): 1.9e-23, 65.34% id in 101 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein complement(225855..226157) Chlamydophila abortus S26/3 3337616 YP_219632.1 CDS CAB203 NC_004552.2 226182 226535 R Similar to Chlamydia pneumoniae ct814.1 hypothetical protein cpn0537 or cpj0537 or cp0215 SWALL:Q9Z815 (EMBL:AE001638) (119 aa) fasta scores: E(): 1.2e-18, 51.42% id in 105 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(226182..226535) Chlamydophila abortus S26/3 3337617 YP_219633.1 CDS CAB204 NC_004552.2 226736 228085 R Similar to Chlamydia pneumoniae D-ala/gly permease daga_1 or cpn0536 or cp0216 SWALL:Q9Z816 (EMBL:AE001638) (449 aa) fasta scores: E(): 4.9e-142, 78.22% id in 450 aa; hypothetical protein complement(226736..228085) Chlamydophila abortus S26/3 3337618 YP_219634.1 CDS lspA NC_004552.2 228151 228648 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(228151..228648) Chlamydophila abortus S26/3 3337619 YP_219635.1 CDS CAB206 NC_004552.2 228654 229028 R Similar to Chlamydia pneumoniae DnaK suppressor DksA or cpn0534 SWALL:Q9Z818 (EMBL:AE001638) (124 aa) fasta scores: E(): 6e-41, 92.74% id in 124 aa, and to Chlamydia pneumoniae hypothetical protein Cp0218 cp0218 SWALL:Q9K2C0 (EMBL:AE002183) (132 aa) fasta scores: E(): 1.6e-40, 91.93% id in 124 aa; hypothetical protein complement(228654..229028) Chlamydophila abortus S26/3 3337620 YP_219636.1 CDS nrdR NC_004552.2 229059 229517 R Similar to Chlamydia pneumoniae hypothetical protein cpn0533/cp0219/cpj0533 cpn0533 or cp0219 or cpj0533 SWALL:Y533_CHLPN (SWALL:Q9Z819) (152 aa) fasta scores: E(): 8.5e-56, 98.02% id in 152 aa; transcriptional regulator NrdR complement(229059..229517) Chlamydophila abortus S26/3 3337754 YP_219637.1 CDS ribC NC_004552.2 229735 230328 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 229735..230328 Chlamydophila abortus S26/3 3338084 YP_219638.1 CDS CAB209 NC_004552.2 230341 231165 D Similar to Chlamydia pneumoniae SAM dependent methyltransferase cpn0531 or cpj0531 or cp0221 SWALL:Q9Z821 (EMBL:AE001638) (275 aa) fasta scores: E(): 2.5e-78, 63.37% id in 273 aa, and to Chlamydia muridarum hypothetical protein Tc0684 tc0684 SWALL:Q9PJZ2 (EMBL:AE002337) (275 aa) fasta scores: E(): 4.3e-76, 65.09% id in 275 aa; hypothetical protein 230341..231165 Chlamydophila abortus S26/3 3337755 YP_219639.1 CDS CAB210 NC_004552.2 231153 231950 D Similar to Chlamydia pneumoniae rRNA methylase Spou_1 or cpn0530 or cp0222 SWALL:Q9Z822 (EMBL:AE001638) (265 aa) fasta scores: E(): 7.5e-70, 62.73% id in 263 aa, and to Streptomyces viridochromogenes rRNA methyltransferase avirB SWALL:Q9F5K6 (EMBL:AF333038) (287 aa) fasta scores: E(): 3.9e-15, 29.6% id in 277 aa; hypothetical protein 231153..231950 Chlamydophila abortus S26/3 3337756 YP_219640.1 CDS lpxK NC_004552.2 232181 233302 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 232181..233302 Chlamydophila abortus S26/3 3337757 YP_219641.1 CDS CAB212 NC_004552.2 233306 234556 D Similar to Chlamydia pneumoniae glutamate symport GltT or cpn0528 or cp0224 SWALL:Q9Z824 (EMBL:AE001637) (414 aa) fasta scores: E(): 3.2e-130, 83.01% id in 418 aa, and to Bacillus caldotenax proton/sodium-glutamate symport protein GltT SWALL:GLTT_BACCA (SWALL:P24944) (421 aa) fasta scores: E(): 4.9e-45, 34.8% id in 408 aa; symport protein 233306..234556 Chlamydophila abortus S26/3 3337758 YP_219642.1 CDS CAB214 NC_004552.2 234569 235738 D Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 234569..235738 Chlamydophila abortus S26/3 3337759 YP_219643.1 CDS CAB215 NC_004552.2 235769 236758 D Similar to Chlamydia muridarum hypothetical protein Tc0679 tc0679 SWALL:Y679_CHLMU (SWALL:Q9PJZ7) (328 aa) fasta scores: E(): 3.4e-89, 67.17% id in 329 aa and Yersinia pestis arabinose 5-phosphate isomerase kdsd or ypo3577 or y0149 or yp3832 SWALL:Q8ZB48 (EMBL:AJ414157) (328 aa) fasta scores: E(): 1.3e-32, 35.22% id in 318 aa; hypothetical protein 235769..236758 Chlamydophila abortus S26/3 3337760 YP_219644.1 CDS CAB216 NC_004552.2 237176 237940 R Similar to Chlamydia pneumoniae ct398 hypothetical protein cpn0525 or cpj0525 or cp0228 SWALL:Q9Z827 (EMBL:AE001637) (254 aa) fasta scores: E(): 2.5e-64, 86.61% id in 254 aa. CDS contains coiled coil region from residues 32-124.; hypothetical protein complement(237176..237940) Chlamydophila abortus S26/3 3337761 YP_219645.1 CDS CAB217 NC_004552.2 238402 239472 R Similar to Chlamydia pneumoniae hypothetical protein Cp0229 cp0229 SWALL:Q9K2B8 (EMBL:AE002184) (359 aa) fasta scores: E(): 3.3e-29, 33.42% id in 362 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein complement(238402..239472) Chlamydophila abortus S26/3 3338246 YP_219646.1 CDS CAB218 NC_004552.2 239539 239880 R Similar to Chlamydophila caviae hypothetical protein cca00222 SWALL:Q824D0 (EMBL:AE016994) (123 aa) fasta scores: E(): 6.5e-19, 45.45% id in 110 aa. Note the differing N-termini. Also weakly similar to Chlamydia pneumoniae hypothetical protein cpn0523 cpn0523 or cpj0523 or cp0230 SWALL:Q9Z829 (EMBL:AE001637) (110 aa) fasta scores: E(): 0.021, 29.88% id in 87 aa; hypothetical protein complement(239539..239880) Chlamydophila abortus S26/3 3338247 YP_219647.1 CDS hemD NC_004552.2 239947 240612 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(239947..240612) Chlamydophila abortus S26/3 3338248 YP_219648.1 CDS glyA NC_004552.2 240926 242419 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 240926..242419 Chlamydophila abortus S26/3 3337735 YP_219649.1 CDS clpP1 NC_004552.2 242439 243017 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 242439..243017 Chlamydophila abortus S26/3 3337634 YP_219650.1 CDS dapF NC_004552.2 242986 243768 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 242986..243768 Chlamydophila abortus S26/3 3338249 YP_219651.1 CDS CAB224 NC_004552.2 243900 244892 D Similar to several proteins of unknown function including: Chlamydia trachomatis hypothetical protein Ct429 ct429 SWALL:Y429_CHLTR (SWALL:O84436) (329 aa) fasta scores: E(): 4.9e-102, 85.8% id in 331 aa, and to Chlamydia pneumoniae protein cpn0518/cp0235/cpj0518 cpn0518 or cp0235 or cpj0518 SWALL:Y518_CHLPN (SWALL:Q9Z834) (324 aa) fasta scores: E(): 9.4e-104, 88.48% id in 330 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 243900..244892 Chlamydophila abortus S26/3 3338250 YP_219652.1 CDS ubiE NC_004552.2 244897 245589 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(244897..245589) Chlamydophila abortus S26/3 3338251 YP_219653.1 CDS CAB226 NC_004552.2 245570 246346 R Similar to several proteins of unknown function including: Chlamydia pneumoniae ct427 hypothetical protein cpn0514 SWALL:Q9Z838 (EMBL:AE001636) (264 aa) fasta scores: E(): 3.7e-57, 56.37% id in 259 aa and weakly similar to Streptomyces coelicolor hypothetical protein Sco4506 or scd35.13 SWALL:Q9L0T8 (EMBL:AL939120) (282 aa) fasta scores: E(): 2.4e-06, 23.66% id in 262 aa; hypothetical protein complement(245570..246346) Chlamydophila abortus S26/3 3338252 YP_219654.1 CDS CAB227 NC_004552.2 246319 247431 R Similar to many proteins of undefined function including: Chlamydia muridarum hypothetical protein Tc0710 SWALL:Q9PJW6 (EMBL:AE002339) (369 aa) fasta scores: E(): 1.1e-107, 71.11% id in 367 aa, Aquifex aeolicus hypothetical protein Aq_648 SWALL:O66888 (EMBL:AE000700) (371 aa) fasta scores: E(): 8.1e-40, 37.17% id in 347 aa and to Bacillus halodurans hypothetical protein Bh3411 SWALL:Q9K7F1 (EMBL:AP001518) (364 aa) fasta scores: E(): 2.5e-35, 33.42% id in 356 aa; hypothetical protein complement(246319..247431) Chlamydophila abortus S26/3 3338253 YP_219655.1 CDS CAB228 NC_004552.2 247651 249513 R Similar to Chlamydia trachomatis hypothetical protein Ct425 SWALL:Y425_CHLTR (SWALL:O84432) (621 aa) fasta scores: E(): 1.2e-194, 72.98% id in 622 aa and to Chlamydia muridarum hypothetical protein Tc0708 SWALL:Y708_CHLMU (SWALL:Q9PJW8) (621 aa) fasta scores: E(): 2.1e-194, 73.31% id in 622 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(247651..249513) Chlamydophila abortus S26/3 3338254 YP_219656.1 CDS CAB229 NC_004552.2 249580 249948 R Weakly similar to Streptomyces coelicolor anti-sigma B factor antagonist RsbV or BldG or sco3549 or sch5.12C SWALL:RSBV_STRCO (SWALL:Q9WVX8) (113 aa) fasta scores: E(): 2.5e-05, 26.73% id in 101 aa and to Chlamydia pneumoniae sigma regulatory factor RsbV_1 or cpn0511 or cp0243 SWALL:Q9Z841 (EMBL:AE001636) (116 aa) fasta scores: E(): 1.2e-34, 81.03% id in 116 aa; regulatory protein complement(249580..249948) Chlamydophila abortus S26/3 3338255 YP_219657.1 CDS CAB230 NC_004552.2 250046 251170 R Similar to several proteins of undefined function including: Chlamydia pneumoniae CBS domain protein tlyc_2 or cpn0510 or cp0244 SWALL:Q9Z842 (EMBL:AE001636) (387 aa) fasta scores: E(): 4.2e-81, 61.24% id in 387 aa and to Chlamydia muridarum hemolysin, tc0706 SWALL:Q9PJX0 (EMBL:AE002339) (374 aa) fasta scores: E(): 6.5e-68, 53.74% id in 374 aa; hypothetical protein complement(250046..251170) Chlamydophila abortus S26/3 3338256 YP_219658.1 CDS CAB231 NC_004552.2 251172 251648 R Similar to several including: Chlamydia pneumoniae predicted metalloenzyme cpn0509 or cpj0509 or cp0245 SWALL:Q9Z843 (EMBL:AE001636) (158 aa) fasta scores: E(): 5.2e-37, 61.78% id in 157 aa, and to Chlamydia muridarum hypothetical protein Tc0705 tc0705 SWALL:Q9PJX1 (EMBL:AE002339) (161 aa) fasta scores: E(): 1.7e-32, 62.66% id in 150 aa; hypothetical protein complement(251172..251648) Chlamydophila abortus S26/3 3337885 YP_219659.1 CDS CAB232 NC_004552.2 251667 251828 R Doubtful CDS which is similar to Chlamydia pneumoniae ct421.2 hypothetical protein cpn0508 or cpj0508 or cp0246 SWALL:Q9Z844 (EMBL:AE001636) (53 aa) fasta scores: E(): 4e-18, 81.13% id in 53 aa, and to Chlamydia muridarum hypothetical protein Tc0704 tc0704 SWALL:Q9PJX2 (EMBL:AE002339) (53 aa) fasta scores: E(): 4.8e-18, 88.67% id in 53 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(251667..251828) Chlamydophila abortus S26/3 3337886 YP_219660.1 CDS CAB233 NC_004552.2 251846 252007 R Doubtful CDS. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(251846..252007) Chlamydophila abortus S26/3 3337887 YP_219661.1 CDS CAB234 NC_004552.2 252146 252790 R Similar to many including: Chlamydia muridarum hypothetical protein Tc0702 SWALL:Q9PJX4 (EMBL:AE002339) (215 aa) fasta scores: E(): 3.2e-62, 83.33% id in 210 aa, Fusobacterium nucleatum transporter fn1485 SWALL:Q8RDM7 (EMBL:AE010654) (223 aa) fasta scores: E(): 1.9e-15, 32.21% id in 208 aa and to Ralstonia solanacearum probable transmembrane protein rsc0465 or rs04432 SWALL:Q8Y271 (EMBL:AL646059) (243 aa) fasta scores: E(): 9.5e-15, 31.37% id in 204 aa; hypothetical protein complement(252146..252790) Chlamydophila abortus S26/3 3337888 YP_219662.1 CDS CAB235 NC_004552.2 252971 253543 R Similar to Prokaryotic and Eukaryotic glycosylases including: Chlamydia pneumoniae 3-methyladenine DNA glycosylase cpn0505 or cp0248 or cpj0505 SWALL:3MGH_CHLPN (SWALL:Q9Z847) (196 aa) fasta scores: E(): 5.4e-55, 69.35% id in 186 aa and to Rattus norvegicus DNA-3-methyladenine glycosylase mpG SWALL:3MG_RAT (SWALL:P23571) (317 aa) fasta scores: E(): 4.6e-14, 34.51% id in 197 aa; 3-methyladenine DNA glycosylase complement(252971..253543) Chlamydophila abortus S26/3 3337889 YP_219663.1 CDS CAB236 NC_004552.2 253543 255591 R Weakly similar to Escherichia coli ribonuclease R Rnr or VacB or b4179 SWALL:RNR_ECOLI (SWALL:P21499) (813 aa) fasta scores: E(): 2.3e-41, 28.95% id in 701 aa and to Chlamydia muridarum ribonuclease R Rnr or VacB or tc0676 SWALL:RNR_CHLMU (SWALL:Q9PK00) (692 aa) fasta scores: E(): 5.7e-195, 71.64% id in 677 aa; ribonuclease complement(253543..255591) Chlamydophila abortus S26/3 3337890 YP_219664.1 CDS dnaK NC_004552.2 255745 257724 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(255745..257724) Chlamydophila abortus S26/3 3337648 YP_219665.1 CDS grpE NC_004552.2 257750 258325 R Similar to Bacillus subtilis GrpE protein(hsp-70 cofactor) SWALL:GRPE_BACSU (SWALL:P15874) (186 aa) fasta scores: E(): 1.7e-11, 34.61% id in 156 aa, and to Chlamydia pneumoniae GrpE protein or cpn0502 or cp0252 SWALL:GRPE_CHLPN (SWALL:Q9Z849) (184 aa) fasta scores: E(): 1.1e-47, 76.66% id in 180 aa; heat shock protein GrpE complement(257750..258325) Chlamydophila abortus S26/3 3337983 YP_219666.1 CDS hrcA NC_004552.2 258322 259482 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(258322..259482) Chlamydophila abortus S26/3 3337997 YP_219667.1 CDS proS NC_004552.2 259591 261324 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(259591..261324) Chlamydophila abortus S26/3 3338069 YP_219668.1 CDS CAB241 NC_004552.2 261590 262786 D Similar to Chlamydia muridarum hypothetical protein Tc0671 SWALL:Y671_CHLMU (SWALL:Q9PK02) (379 aa) fasta scores: E(): 9.6e-11, 23.13% id in 402 aa and to Chlamydia pneumoniae hypothetical protein cpn0499/cp0255/cpj0499 cpn0499 or cp0255 or cpj0499 SWALL:Y499_CHLPN (SWALL:Q9Z852) (385 aa) fasta scores: E(): 6.5e-10, 25% id in 392 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 261590..262786 Chlamydophila abortus S26/3 3337891 YP_219669.1 CDS CAB242 NC_004552.2 262893 263837 D Similar to Chlamydia pneumoniae hypothetical protein Cpn0498 or cpj0498 or cp0256 SWALL:Q9Z853 (EMBL:AE001634) (317 aa) fasta scores: E(): 3.6e-70, 54.14% id in 314 aa; lipoprotein 262893..263837 Chlamydophila abortus S26/3 3337892 YP_219670.1 CDS CAB243 NC_004552.2 263842 264132 D Similar to several proteins of unknown function e.g. Chlamydia trachomatis hypothetical protein Ct388 SWALL:O84393 (EMBL:AE001312) (115 aa) fasta scores: E(): 5.3e-17, 52.08% id in 96 aa and Pasteurella multocida hypothetical protein Pm1313 SWALL:Q9CLC6 (EMBL:AE006170) (99 aa) fasta scores: E(): 3.7e-05, 35.52% id in 76 aa; hypothetical protein 263842..264132 Chlamydophila abortus S26/3 3337893 YP_219671.1 CDS CAB244 NC_004552.2 264117 265160 R Similar to several proteins of unknown function e.g. Chlamydia pneumoniae ct391 hypothetical protein cpn0496 SWALL:Q9Z855 (EMBL:AE001634) (340 aa) fasta scores: E(): 1.8e-84, 66.16% id in 331 aa, and to Corynebacterium glutamicum uncharacterized BCR cgl2251 SWALL:BAB99644 (EMBL:AP005281) (313 aa) fasta scores: E(): 1.5e-06, 22.65% id in 309 aa; hypothetical protein complement(264117..265160) Chlamydophila abortus S26/3 3337894 YP_219672.1 CDS CAB245 NC_004552.2 265157 266353 R catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase complement(265157..266353) Chlamydophila abortus S26/3 3337895 YP_219673.1 CDS CAB246 NC_004552.2 266618 267382 D Similar to Chlamydophila caviae hypothetical protein cca00250 SWALL:Q824A3 (EMBL:AE016994) (296 aa) fasta scores: E(): 9.8e-13, 41.4% id in 314 aa. Note the variation between these two protein products in the central region.; hypothetical protein 266618..267382 Chlamydophila abortus S26/3 3337896 YP_219674.1 CDS CAB247 NC_004552.2 267808 269052 D Similar to Chlamydia pneumoniae hypothetical protein Cp0263 SWALL:Q9K2B1 (EMBL:AE002186) (410 aa) fasta scores: E(): 1.9e-131, 74.69% id in 403 aa and Chlamydia muridarum hypothetical protein Tc0668 tc0668 SWALL:Q9PK05 (EMBL:AE002334) (408 aa) fasta scores: E(): 6.7e-123, 70.17% id in 409 aa; hypothetical protein 267808..269052 Chlamydophila abortus S26/3 3337897 YP_219675.1 CDS CAB248 NC_004552.2 269053 271137 R Similar to Chlamydia muridarum hypothetical protein Tc0666 SWALL:Q9PK07 (EMBL:AE002334) (696 aa) fasta scores: E(): 1.8e-179, 61.85% id in 692 aa and to Chlamydia trachomatis hypothetical protein Ct387 SWALL:O84392 (EMBL:AE001312) (691 aa) fasta scores: E(): 1.5e-177, 61.12% id in 692 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(269053..271137) Chlamydophila abortus S26/3 3337898 YP_219676.1 CDS CAB249 NC_004552.2 271285 272154 D Similar to Prokaryotic and Eukaryotic proteins including: Chlamydia pneumoniae hypothetical protein cpn0489/cp0265/cpj0489 cpn0489 or cp0265 or cpj0489 SWALL:Y489_CHLPN (SWALL:Q9Z862) (290 aa) fasta scores: E(): 8.7e-104, 76.55% id in 290 aa and to Homo sapiens Myg1 protein c12orf10 SWALL:MYG1_HUMAN (SWALL:Q9HB07) (376 aa) fasta scores: E(): 2.4e-12, 32.18% id in 320 aa; hypothetical protein 271285..272154 Chlamydophila abortus S26/3 3337899 YP_219677.1 CDS CAB250 NC_004552.2 272151 272483 D Similar to Fusobacterium nucleatum bis(5'-nucleosyl)-tetraphosphatase (EC 3.6.1.17) fn1873 SWALL:Q8RHW7 (EMBL:AE010489) (112 aa) fasta scores: E(): 2.6e-15, 47.7% id in 109 aa and to Campylobacter jejuni hit-family protein Cj0898 SWALL:Q9PP33 (EMBL:AL139076) (121 aa) fasta scores: E(): 5.1e-15, 49.05% id in 106 aa. Contains a histidine triad motif; hypothetical protein 272151..272483 Chlamydophila abortus S26/3 3337900 YP_219678.1 CDS CAB251 NC_004552.2 272528 274144 D Similar to Chlamydia pneumoniae ct384 hypothetical protein cpn0487 or cpj0487 or cp0267 SWALL:Q9Z864 (EMBL:AE001634) (543 aa) fasta scores: E(): 2.6e-125, 58.17% id in 538 aa, and to Chlamydia muridarum hypothetical protein Tc0663 SWALL:Q9PK10 (EMBL:AE002334) (526 aa) fasta scores: E(): 6e-92, 48.68% id in 534 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 272528..274144 Chlamydophila abortus S26/3 3337901 YP_219679.1 CDS CAB252 NC_004552.2 274747 276081 D Similar to Haemophilus influenzae sodium/pantothenate symporter PanF or hi0975 SWALL:PANF_HAEIN (SWALL:P44963) (484 aa) fasta scores: E(): 2.5e-06, 22.98% id in 483 aa and to Chlamydia pneumoniae sodium:solute symporter family protein Cp0268 SWALL:Q9K2A8 (EMBL:AE002186) (444 aa) fasta scores: E(): 1e-99, 64.67% id in 436 aa; sodium symporter 274747..276081 Chlamydophila abortus S26/3 3337902 YP_219680.1 CDS CAB253 NC_004552.2 276170 276370 R Similar to Chlamydia pneumoniae ct382.1 hypothetical protein cpn0485 or cpj0485 or cp0269 SWALL:Q9Z866 (EMBL:AE001633) (64 aa) fasta scores: E(): 5.8e-12, 59.01% id in 61 aa and to Chlamydia trachomatis hypothetical protein hypothetical protein Ct382.1 SWALL:O84387 (EMBL:AE001311) (63 aa) fasta scores: E(): 7.9e-07, 41.66% id in 60 aa; hypothetical protein complement(276170..276370) Chlamydophila abortus S26/3 3337903 YP_219681.1 CDS CAB255 NC_004552.2 277449 280766 R Similar to Chlamydophila caviae hypothetical protein cca00261 SWALL:Q823Z2 (EMBL:AE016994) (1044 aa) fasta scores: E(): 1.2e-150, 61.39% id in 1106 aa.Note the product of this CDS is rich in the amino acids Leu, Thr, Pro and Gln and the variation between these two protein products in the N-terminus; hypothetical protein complement(277449..280766) Chlamydophila abortus S26/3 3337905 YP_219682.1 CDS CAB256 NC_004552.2 280899 281663 D Similar to many aminoacid transprot proteins including: Escherichia coli arginine-binding periplasmic protein 2 precursor ArtJ or b0860 SWALL:ARTJ_ECOLI (SWALL:P30860) (243 aa) fasta scores: E(): 1.8e-15, 30.63% id in 222 aa and to Chlamydia pneumoniae arginine periplasmic binding protein ArtJ or cpn0482 SWALL:Q9Z869 (EMBL:AE001633) (259 aa) fasta scores: E(): 1.2e-62, 62.05% id in 253 aa; membrane transport protein, solute binding component 280899..281663 Chlamydophila abortus S26/3 3337337 YP_219683.1 CDS CAB257 NC_004552.2 281837 282508 D Similar to Chlamydia pneumoniae ct383 hypothetical protein cpn0480 or cpj0480 or cp0274 SWALL:Q9Z871 (EMBL:AE001633) (218 aa) fasta scores: E(): 8.9e-30, 39.81% id in 211 aa, and to Chlamydia muridarum hypothetical protein Tc0662 tc0662 SWALL:Q9PK11 (EMBL:AE002334) (246 aa) fasta scores: E(): 6.2e-22, 36.58% id in 205 aa; hypothetical protein 281837..282508 Chlamydophila abortus S26/3 3337338 YP_219684.1 CDS CAB258 NC_004552.2 282595 283416 D Similar to Chlamydia pneumoniae metal dependent hydrolase Cpn0479 or cp0275 SWALL:Q9Z872 (EMBL:AE001633) (270 aa) fasta scores: E(): 1e-59, 55.97% id in 268 aa and to Escherichia coli PhnP protein phnp or b4092 SWALL:PHNP_ECOLI (SWALL:P16692) (252 aa) fasta scores: E(): 0.016, 24.71% id in 263 aa; hydrolase 282595..283416 Chlamydophila abortus S26/3 3337339 YP_219685.1 CDS CAB259 NC_004552.2 283420 284808 D Similar to Escherichia coli GTP-binding protein HflX or b4173 SWALL:HFLX_ECOLI (SWALL:P25519) (426 aa) fasta scores: E(): 1.1e-40, 40.35% id in 399 aa and to Chlamydia muridarum GTP-binding protein tc0658 SWALL:Q9PK15 (EMBL:AE002334) (447 aa) fasta scores: E(): 1.6e-119, 74.72% id in 447 aa; GTP-binding protein 283420..284808 Chlamydophila abortus S26/3 3337340 YP_219686.1 CDS CAB260 NC_004552.2 284918 286183 D Similar to several including: Chlamydia pneumoniae hypothetical protein Cpn0477/cp0277/cpj0477 cpn0477 or cp0277 or cpj0477 SWALL:Y477_CHLPN (SWALL:Q9Z874) (421 aa) fasta scores: E(): 4.1e-119, 71.97% id in 421 aa, and to Thermoanaerobacter tengcongensis 2-methylthioadenine synthetase MiaB or tte0962 SWALL:Q8RB61 (EMBL:AE013061) (437 aa) fasta scores: E(): 5.5e-40, 34.82% id in 425 aa, and to Thermotoga maritima hypothetical protein Tm0830 SWALL:Y830_THEMA (SWALL:Q9WZT7) (434 aa) fasta scores: E(): 6.3e-40, 36.83% id in 429 aa; hypothetical protein 284918..286183 Chlamydophila abortus S26/3 3337341 YP_219687.1 CDS CAB261 NC_004552.2 286180 287178 D Similar to Chlamydia pneumoniae ct865 hypothetical protein Cpn0476 or cpj0476 or cp0278 SWALL:Q9Z875 (EMBL:AE001632) (329 aa) fasta scores: E(): 8e-78, 59.45% id in 333 aa and to Chlamydia trachomatis hypothetical protein Ct865 SWALL:O84873 (EMBL:AE001359) (329 aa) fasta scores: E(): 2.9e-59, 50.74% id in 335 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 286180..287178 Chlamydophila abortus S26/3 3337342 YP_219688.1 CDS glgB NC_004552.2 287191 289356 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 287191..289356 Chlamydophila abortus S26/3 3338056 YP_219689.1 CDS CAB263 NC_004552.2 289494 291275 D Similar to Chlamydia trachomatis hypothetical protein Ct365 SWALL:O84370 (EMBL:AE001309) (575 aa) fasta scores: E(): 2.7e-63, 39.96% id in 588 aa and to Chlamydia pneumoniae ct365 hypothetical protein cpn0474 or cpj0474 or cp0280 SWALL:Q9Z877 (EMBL:AE001632) (589 aa) fasta scores: E(): 5.3e-58, 50.08% id in 593 aa; hypothetical protein 289494..291275 Chlamydophila abortus S26/3 3337980 YP_219690.1 CDS CAB264 NC_004552.2 291461 293500 D hypothetical protein 291461..293500 Chlamydophila abortus S26/3 3337343 YP_219691.1 CDS pmp3E NC_004552.2 293548 296514 R Similar to many Chlamydial outer membrane proteins including: C.trachomatis probable outer membrane protein Pmpf precursor or ct870 SWALL:PMPF_CHLTR (SWALL:P38008) (1034 aa) fasta scores: E(): 1.7e-21, 28.99% id in 1083 aa and to Chlamydia pneumoniae probable outer membrane protein Pmp10 precursor or omp5 or cp0303 SWALL:PM10_CHLPN (SWALL:Q9RB65) (928 aa) fasta scores: E(): 3.2e-08, 24.13% id in 1036 aa; hypothetical protein complement(293548..296514) Chlamydophila abortus S26/3 3337677 YP_219692.1 CDS pmp4E NC_004552.2 296536 299397 R Similar to Chlamydia pneumoniae probable outer membrane protein Pmp15 precursor pmp15 or cpn0466 or cp0286 SWALL:PM15_CHLPN (SWALL:Q9Z883) (938 aa) fasta scores: E(): 3.4e-116, 41.2% id in 932 aa, and to Chlamydia trachomatis probable outer membrane protein pmpe precursor pmpe or ct869 SWALL:PMPE_CHLTR (SWALL:O84877) (964 aa) fasta scores: E(): 1.5e-51, 31.74% id in 945 aa. Note the product of this CDS appears to lack a signal sequence.; hypothetical protein complement(296536..299397) Chlamydophila abortus S26/3 3337678 YP_219693.1 CDS pmp5E NC_004552.2 299664 300743 R Weakly similar to the C-terminus of the products of many Chlamydia outer membrane proteins including: Chlamydia muridarum PmpE precursor or tc0261 SWALL:PMPE_CHLMU (SWALL:Q9PL47) (976 aa) fasta scores: E(): 1.7e-24, 28.98% id in 314 aa Chlamydia pneumoniae probable outer membrane protein Pmp18 precursor or cpn0471 or cp0283 SWALL:PM18_CHLPN (SWALL:Q9Z880) (946 aa) fasta scores: E(): 2.7e-22, 27.81% id in 338 aa. Note that although a translational start site has been assigned this CDS may be a degenerate gene fragment.; hypothetical protein complement(299664..300743) Chlamydophila abortus S26/3 3338060 YP_219694.1 CDS pmp6H NC_004552.2 301197 304139 R Similar to many Chlamydia outer membrane proteins including: Chlamydia pneumoniae probable outer membrane protein Pmp14 precursor or cpn0454 or cp0298 SWALL:PM14_CHLPN (SWALL:Q9Z895) (978 aa) fasta scores: E(): 9.5e-179, 48.07% id in 988 aa and to Chlamydia trachomatis probable outer membrane protein PmpH precursor or ct872 SWALL:PMPH_CHLTR (SWALL:O84880) (1016 aa) fasta scores: E(): 8.9e-113, 38.29% id in 1029 aa; hypothetical protein complement(301197..304139) Chlamydophila abortus S26/3 3338061 YP_219695.1 CDS pmp7G NC_004552.2 304165 307239 R Similar to Chlamydia trachomatis probable outer membrane protein PmpG precursor or ct871 SWALL:PMPG_CHLTR (SWALL:O84879) (1013 aa) fasta scores: E(): 7.8e-72, 38.95% id in 1068 aa and to Chlamydia pneumoniae probable outer membrane protein Pmp13 precursor or omp14 or cpn0453 or cp0299 SWALL:PM13_CHLPN (SWALL:Q9Z896) (973 aa) fasta scores: E(): 2.6e-63, 37.57% id in 1046 aa; hypothetical protein complement(304165..307239) Chlamydophila abortus S26/3 3338062 YP_219696.1 CDS pmp10G NC_004552.2 313284 315806 R Similar to many Chlamydophila outer membrane proteins including: C. abortus Pomp91a SWALL:P71132 (EMBL:U65942) (847 aa) fasta scores: E(): 4.5e-85, 34.81% id in 876 aa, and to Chlamydia pneumoniae probable outer membrane protein pmp11 precursor pmp11 or omp4 or cpn0449 or cp0302 SWALL:PM11_CHLPN (SWALL:O86164) (928 aa) fasta scores: E(): 1.4e-70, 33.08% id in 949 aa; hypothetical protein complement(313284..315806) Chlamydophila abortus S26/3 3337666 YP_219697.1 CDS pmp11G NC_004552.2 315962 318511 R Similar to many Chlamydophila outer membrane proteins including: Chlamydia pneumoniae probable outer membrane protein Pmp2 precursor or omp7 or cpn0013 or cp0761 SWALL:PMP2_CHLPN (SWALL:Q9Z3A1) (841 aa) fasta scores: E(): 1e-76, 33.87% id in 865 aa, and to Chlamydophila abortus pomp91a SWALL:P71132 (EMBL:U65942) (847 aa) fasta scores: E(): 2.8e-71, 32.65% id in 882 aa; hypothetical protein complement(315962..318511) Chlamydophila abortus S26/3 3337667 YP_219698.1 CDS pmp13G NC_004552.2 321502 324045 R Previously sequenced as:Chlamydophila abortus Pomp91A SWALL:P71132 (EMBL:U65942) (847 aa) fasta scores: E(): 0, 100% id in 847 aa. Also similar to Chlamydia pneumoniae probable outer membrane protein Pmp10 precursor or omp5 or cp0303 SWALL:PM10_CHLPN (SWALL:Q9RB65) (928 aa) fasta scores: E(): 1.2e-116, 41.89% id in 962 aa. Note this CDS contains a homopolymeric run of 10 x G residues which may be important for phase variable expression of its protein product; hypothetical protein complement(321502..324045) Chlamydophila abortus S26/3 3337669 YP_219699.1 CDS pmp14G NC_004552.2 324168 326948 R Previously sequenced as: Chlamydophila abortus outer membrane protein SWALL:P71135 (EMBL:U72499) (926 aa) fasta scores: E(): 0, 99.89% id in 926 aa. Also highly similar to Chlamydia pneumoniae probable outer membrane protein Pmp10 precursor or omp5 or cp0303 SWALL:PM10_CHLPN (SWALL:Q9RB65) (928 aa) fasta scores: E(): 9.4e-144, 46.84% id in 952 aa; hypothetical protein complement(324168..326948) Chlamydophila abortus S26/3 3337670 YP_219700.1 CDS pmp15G NC_004552.2 327092 331228 R Similar to Chlamydia pneumoniae probable outer membrane protein pmp6 precursor pmp6 or cpn0444 or cp0309 SWALL:PMP6_CHLPN (SWALL:Q9Z899) (1276 aa) fasta scores: E(): 2.8e-57, 30.65% id in 1450aa. Also highly similar to Chlamydophila abortus outer membrane protein (gene fragment) SWALL:P71134 (EMBL:U72499) (649 aa) fasta scores: E(): 1.7e-204, 99.84% id in 649 aa; hypothetical protein complement(327092..331228) Chlamydophila abortus S26/3 3337671 YP_219701.1 CDS CAB284 NC_004552.2 331423 331698 R Similar to Chlamydia pneumoniae ct001 hypothetical protein Cpn0001 or cpj0001 or cp0775 SWALL:Q9Z9G9 (EMBL:AE001585) (93 aa) fasta scores: E(): 8.4e-20, 65.95% id in 94 aa, and to Chlamydia trachomatis hypothetical protein Ct001 ct001 SWALL:O84004 (EMBL:AE001275) (90 aa) fasta scores: E(): 9.8e-12, 50% id in 90 aa; hypothetical protein complement(331423..331698) Chlamydophila abortus S26/3 3337345 YP_219702.1 CDS gatC NC_004552.2 331899 332201 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 331899..332201 Chlamydophila abortus S26/3 3338054 YP_219703.1 CDS gatA NC_004552.2 332223 333698 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 332223..333698 Chlamydophila abortus S26/3 3338052 YP_219704.1 CDS gatB NC_004552.2 333698 335161 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 333698..335161 Chlamydophila abortus S26/3 3338053 YP_219705.1 CDS CAB288 NC_004552.2 335282 336508 R Similar in parts to Chlamydia pneumoniae hypothetical protein cpn0443/cp0310/cpj0443 cpn0443 or cp0310 or cpj0443 SWALL:Y443_CHLPN (SWALL:Q9Z8A0) (417 aa) fasta scores: E(): 1.3e-36, 36.36% id in 374 aa; hypothetical protein complement(335282..336508) Chlamydophila abortus S26/3 3337346 YP_219706.1 CDS CAB289 NC_004552.2 336681 337244 R Similar to Chlamydia muridarum hypothetical protein Tc0274 SWALL:Y274_CHLMU (SWALL:Q9PL34) (193 aa) fasta scores: E(): 1.1e-10, 29.54% id in 176 aa and to Chlamydia trachomatis hypothetical protein Ct006 ct006 SWALL:Y006_CHLTR (SWALL:O84009) (189 aa) fasta scores: E(): 1.8e-08, 30.05% id in 173 aa; hypothetical protein complement(336681..337244) Chlamydophila abortus S26/3 3337347 YP_219707.1 CDS CAB290 NC_004552.2 337405 338355 R Similar to Chlamydia pneumoniae hypothetical protein cpn0441/cp0312/cpj0441 cpn0441 or cp0312 or cpj0441 SWALL:Y441_CHLPN (SWALL:Q9Z8A2) (316 aa) fasta scores: E(): 1.3e-93, 67.82% id in 317 aa, and to Chlamydia muridarum hypothetical protein Tc0275 tc0275 SWALL:Y275_CHLMU (SWALL:Q9PL33) (316 aa) fasta scores: E(): 1.4e-79, 58.67% id in 317 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(337405..338355) Chlamydophila abortus S26/3 3337348 YP_219708.1 CDS rnhC NC_004552.2 338573 339475 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII complement(338573..339475) Chlamydophila abortus S26/3 3337474 YP_219709.1 CDS CAB292 NC_004552.2 339749 340180 D Similar to Chlamydia pneumoniae HTH transcriptional regulator YfgA or cpn1069 or cp0781 SWALL:Q9Z6J0 (EMBL:AE001687) (143 aa) fasta scores: E(): 8.6e-46, 82.51% id in 143 aa, and to Chlamydia trachomatis HTH transcriptional regulator YfgA or ct009 SWALL:O84012 (EMBL:AE001275) (143 aa) fasta scores: E(): 7.3e-40, 73.42% id in 143 aa; hypothetical protein 339749..340180 Chlamydophila abortus S26/3 3337349 YP_219710.1 CDS CAB293 NC_004552.2 340250 341578 R Weakly similar to Chlamydia pneumoniae hypothetical protein cpn1070 or cpj1070 or cp0780 SWALL:Q9Z6I9 (EMBL:AE001687) (456 aa) fasta scores: E(): 2.4e-11, 27.35% id in 435 aa; hypothetical protein complement(340250..341578) Chlamydophila abortus S26/3 3337350 YP_219711.1 CDS CAB294 NC_004552.2 341877 343205 R hypothetical protein complement(341877..343205) Chlamydophila abortus S26/3 3337351 YP_219712.1 CDS CAB295 NC_004552.2 343521 343745 R doubtful CDS with no significant database hits; hypothetical protein complement(343521..343745) Chlamydophila abortus S26/3 3337352 YP_219713.1 CDS CAB296 NC_004552.2 343864 344730 D Similar to Chlamydia pneumoniae outer membrane protein cpn1073/cp0776/cpj1073 precursor cpn1073 or cp0776 or cpj1073 SWALL:OMPZ_CHLPN (SWALL:Q9Z6I6) (274 aa) fasta scores: E(): 4.3e-07, 24.43% id in 221 aa and Chlamydia pneumoniae hypothetical protein cpn1072 or cpj1072 or cp0777 SWALL:Q9Z6I7 (EMBL:AE001687) (289 aa) fasta scores: E(): 9.6e-40, 41.75% id in 273 aa; hypothetical protein 343864..344730 Chlamydophila abortus S26/3 3337353 YP_219714.1 CDS CAB297 NC_004552.2 344865 345734 D Weakly similar to Chlamydia pneumoniae outer membrane protein cpn1073/cp0776/cpj1073 precursor cpn1073 or cp0776 or cpj1073 SWALL:OMPZ_CHLPN (SWALL:Q9Z6I6) (274 aa) fasta scores: E(): 1.7e-38, 40.36% id in 270 aa, and to Chlamydia pneumoniae hypothetical protein cpn1072 or cpj1072 or cp0777 SWALL:Q9Z6I7 (EMBL:AE001687) (289 aa) fasta scores: E(): 2.5e-07, 28.17% id in 252 aa; hypothetical protein 344865..345734 Chlamydophila abortus S26/3 3337354 YP_219715.1 CDS CAB298 NC_004552.2 346225 348327 D Similar to many proteins of undefined function including: Chlamydia pneumoniae ct356 hypothetical protein cpn1057 or cpj1057 or cp0793 SWALL:Q9Z6K2 (EMBL:AE001686) (700 aa) fasta scores: E(): 3.7e-200, 65.23% id in 699 aa, and to Aquifex aeolicus hypothetical protein Aq_2146 aq_2146 SWALL:O67902 (EMBL:AE000775) (692 aa) fasta scores: E(): 9.8e-69, 32.45% id in 684 aa, and to Methanosarcina mazei conserved protein mm0619 SWALL:AAM30315 (EMBL:AE013287) (700 aa) fasta scores: E(): 2e-65, 32.69% id in 682 aa; hypothetical protein 346225..348327 Chlamydophila abortus S26/3 3337355 YP_219716.1 CDS CAB299 NC_004552.2 348439 349524 D Similar to Chlamydia pneumoniae protein precursor cpn1058 or cp0792 or cpj1058 SWALL:YA58_CHLPN (SWALL:Q9Z6K1) (363 aa) fasta scores: E(): 2.7e-91, 64.24% id in 358 aa, and to Clostridium perfringens hypothetical protein Cpe0268 cpe0268 SWALL:Q8XNR4 (EMBL:AP003186) (248 aa) fasta scores: E(): 8.5, 19.13% id in 230 aa; hypothetical protein 348439..349524 Chlamydophila abortus S26/3 3337356 YP_219717.1 CDS ksgA NC_004552.2 349533 350369 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 349533..350369 Chlamydophila abortus S26/3 3337437 YP_219718.1 CDS dxs NC_004552.2 350828 352762 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(350828..352762) Chlamydophila abortus S26/3 3337657 YP_219719.1 CDS CAB302 NC_004552.2 352759 353013 R Similar to Chlamydia pneumoniae ct330 hypothetical protein cpn1061 or cp0789 SWALL:Q9Z6J8 (EMBL:AE001686) (85 aa) fasta scores: E(): 1.3e-09, 50% id in 74 aa and Chlamydia pneumoniae ct330 hypothetical protein cpj1061 SWALL:Q9JS71 (EMBL:AP002548) (85 aa) fasta scores: E(): 5.7e-09, 48.64% id in 74 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(352759..353013) Chlamydophila abortus S26/3 3337357 YP_219720.1 CDS xseB NC_004552.2 353028 353255 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(353028..353255) Chlamydophila abortus S26/3 3338244 YP_219721.1 CDS xseA NC_004552.2 353259 354926 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(353259..354926) Chlamydophila abortus S26/3 3338243 YP_219722.1 CDS tpiA NC_004552.2 355057 355821 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 355057..355821 Chlamydophila abortus S26/3 3338220 YP_219723.1 CDS secG NC_004552.2 356095 356409 D Similar to Chlamydia muridarum hypothetical protein Tc0631 SWALL:Q9PK42 (EMBL:AE002331) (102 aa) fasta scores: E(): 2.4e-25, 71.84% id in 103 aa and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein-export membrane protein SecG or b3175 or c3931 or z4537 or ecs4054 SWALL:SECG_ECOLI (SWALL:P33582) (110 aa) fasta scores: E(): 0.0029, 32.85% id in 70 aa; preprotein translocase subunit SecG 356095..356409 Chlamydophila abortus S26/3 3337358 YP_219724.1 CDS def NC_004552.2 356666 357220 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 356666..357220 Chlamydophila abortus S26/3 3337642 YP_219725.1 CDS CAB308 NC_004552.2 357297 359393 R Similar to Chlamydia pneumoniae OMP protein cpn0020 or cpj0020 SWALL:Q9Z9G1 (EMBL:AE001587) (695 aa) fasta scores: E(): 0, 71.71% id in 693 aa; lipoprotein complement(357297..359393) Chlamydophila abortus S26/3 3337359 YP_219726.1 CDS CAB309 NC_004552.2 359404 361110 R Similar to Chlamydia pneumoniae OMP protein cpn0021 or cpj0021 or cp0755 SWALL:Q9Z9G0 (EMBL:AE001587) (568 aa) fasta scores: E(): 4.8e-144, 68.01% id in 569 aa and to Chlamydia trachomatis hypothetical protein Ct350 SWALL:O84354 (EMBL:AE001308) (566 aa) fasta scores: E(): 2.8e-115, 56.46% id in 572 aa; hypothetical protein complement(359404..361110) Chlamydophila abortus S26/3 3337360 YP_219727.1 CDS maf NC_004552.2 361092 361682 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(361092..361682) Chlamydophila abortus S26/3 3337361 YP_219728.1 CDS CAB311 NC_004552.2 361724 363325 R Similar to many proposed ABC transporter, ATP-binding proteins including: Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical YbiT or ecs0897 SWALL:YBIT_ECOLI (SWALL:P75790) (530 aa) fasta scores: E(): 1e-70, 42.91% id in 529 aa and Leptospira interrogans ABC transporter, ATP-binding protein La3684 SWALL:Q8F013 (EMBL:AE011523) (544 aa) fasta scores: E(): 4.9e-71, 44.98% id in 518 aa. Note the alternative translational start site at codon 5; ABC transporter, ATP-binding component complement(361724..363325) Chlamydophila abortus S26/3 3337362 YP_219729.1 CDS xerC NC_004552.2 363366 364304 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(363366..364304) Chlamydophila abortus S26/3 3337363 YP_219730.1 CDS CAB313 NC_004552.2 364349 365269 R member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(364349..365269) Chlamydophila abortus S26/3 3337364 YP_219731.1 CDS CAB314 NC_004552.2 365372 366043 R Similar to Chlamydophila caviae hypothetical protein cca00318 SWALL:Q823T7 (EMBL:AE016995) (233 aa) fasta scores: E(): 4.9e-35, 53.5% id in 228 aa. Note the high incidence of the residue Serine in the C-terminus of the predicted product of this CDS.; serine rich exported protein complement(365372..366043) Chlamydophila abortus S26/3 3337365 YP_219732.1 CDS CAB315 NC_004552.2 366183 368639 R Similar to many Prokaryotic and Eukaryotic serine proteases including: Chlamydia pneumoniae ATP-dependent protease Lon or cpn0027 or cp0749 SWALL:LON_CHLPN (SWALL:Q9Z9F4) (819 aa) fasta scores: E(): 0, 91.44% id in 818 aa, Homo sapiens Lon protease homolog, mitochondrial precursor prss15 SWALL:LONM_HUMAN (SWALL:P36776) (959 aa) fasta scores: E(): 4.8e-114, 45.43% id in 843 aa and Bacillus subtilis ATP-dependent protease LonA or loN SWALL:LON1_BACSU (SWALL:P37945) (774 aa) fasta scores: E(): 2.5e-93, 39.43% id in 781 aa; serine protease complement(366183..368639) Chlamydophila abortus S26/3 3337366 YP_219733.1 CDS CAB316 NC_004552.2 369284 369925 D Weakly similar in the N-terminal region to several including: to Neisseria meningitidis hypothetical protein Nma0585 SWALL:Q9JW17 (EMBL:AL162753) (225 aa) fasta scores: E(): 0.027, 28.57% id in 161 aa, and to Escherichia coli hypothetical protease YeaZ or b1807 SWALL:YEAZ_ECOLI (SWALL:P76256) (231 aa) fasta scores: E(): 0.12, 28.14% id in 135 aa; hypothetical protein 369284..369925 Chlamydophila abortus S26/3 3337367 YP_219734.1 CDS rpsU NC_004552.2 370125 370301 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 370125..370301 Chlamydophila abortus S26/3 3338122 YP_219735.1 CDS dnaJ NC_004552.2 370331 371506 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 370331..371506 Chlamydophila abortus S26/3 3337647 YP_219736.1 CDS CAB319 NC_004552.2 371541 373577 D Similar to over the whole range to Chlamydophila caviae 2-oxoisovalerate dehydrogenase, e1 component, alpha and beta subunit pdha/pdhb or cca00324 SWALL:Q823T1 (EMBL:AE016995) (678 aa) fasta scores: E(): 0, 92.77% id in 678 aa. Also similar in parts to many including Bacillus subtilis 2-oxoisovalerate dehydrogenase beta subunit SWALL:ODBB_BACSU (SWALL:P37941) (327 aa) fasta scores: E(): 1.2e-53, 47.07% id in 325 aa; oxidoreductase 371541..373577 Chlamydophila abortus S26/3 3337368 YP_219737.1 CDS CAB322 NC_004552.2 374848 376146 R Similar to Chlamydia pneumoniae ct339 hypothetical protein cpj0035 or cp0741 SWALL:Q9JS51 (EMBL:AE002232) (487 aa) fasta scores: E(): 9.4e-81, 49.88% id in 431 aa. Also similar in the C-terminus to several competence proteins e.g. Chlorobium tepidum ComEC/rec2 family protein ct1367 SWALL:AAM72596 (EMBL:AE012895) (729 aa) fasta scores: E(): 8.7e-05, 24.01% id in 254 aa; hypothetical protein complement(374848..376146) Chlamydophila abortus S26/3 3338125 YP_219738.1 CDS CAB323 NC_004552.2 376116 376907 D Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 376116..376907 Chlamydophila abortus S26/3 3338126 YP_219739.1 CDS CAB324 NC_004552.2 376900 377241 D Similar to Chlamydia pneumoniae phosphocarrier protein Hpr PtsH or cpn0037 or cp0738 SWALL:PTHP_CHLPN (SWALL:Q9Z9E4) (108 aa) fasta scores: E(): 4.2e-24, 66.66% id in 99 aa, and to Bacillus subtilis phosphocarrier protein Hpr PtsH SWALL:PTHP_BACSU (SWALL:P08877) (87 aa) fasta scores: E(): 3.1e-06, 39.5% id in 81 aa; phosphotransferase system, phosphocarrier protein 376900..377241 Chlamydophila abortus S26/3 3338127 YP_219740.1 CDS CAB325 NC_004552.2 377242 378942 D Similar to Mycoplasma genitalium phosphoenolpyruvate-protein phosphotransferase PtsI or mg429 SWALL:PT1_MYCGE (SWALL:P47668) (572 aa) fasta scores: E(): 2.1e-25, 28.47% id in 569 aa and to Streptomyces coelicolor phosphoenolpyruvate-protein phosphotransferase PtsI or sco1391 or sc1a8a.11 SWALL:Q9KZP1 (EMBL:AL939108) (556 aa) fasta scores: E(): 4.4e-37, 29.18% id in 562 aa; phosphoenolpyruvate-protein phosphotransferase 377242..378942 Chlamydophila abortus S26/3 3338128 YP_219741.1 CDS CAB326 NC_004552.2 378939 379229 R Similar to many proteins of undefined function including: Chlamydia pneumoniae upf0233 hypothetical protein cpn0039/cp0376/cpj0039 cpn0039 or cp0736 or cpj0039 SWALL:Y039_CHLPN (SWALL:Q9Z9E2) (96 aa) fasta scores: E(): 1e-29, 83.33% id in 96 aa, and to Rhizobium loti hypothetical upf0133 protein Mlr5504 mlr5504 SWALL:YJA4_RHILO (SWALL:Q98BM7) (107 aa) fasta scores: E(): 4.1e-05, 30.33% id in 89 aa; hypothetical protein complement(378939..379229) Chlamydophila abortus S26/3 3338129 YP_219742.1 CDS dnaX NC_004552.2 379234 380565 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(379234..380565) Chlamydophila abortus S26/3 3337651 YP_219743.1 CDS CAB328 NC_004552.2 381064 383160 D Similar to many proteins of undefined function including: Chlamydia pneumoniae conserved hypothetical inner membrane protein YqfF SWALL:Q9Z9D3 (EMBL:AE001590) (705 aa) fasta scores: E(): 2.3e-149, 55.54% id in 695 aa and Thermoanaerobacter tengcongensis predicted membrane-associated HD superfamily hydrolase tte0971 SWALL:Q8RB53 (EMBL:AE013062) (687 aa) fasta scores: E(): 3.1e-38, 28.03% id in 617 aa; hypothetical protein 381064..383160 Chlamydophila abortus S26/3 3338130 YP_219744.1 CDS CAB329 NC_004552.2 383143 383634 R Similar to Chlamydia pneumoniae hypothetical protein Cpn0049 SWALL:Q9Z9D2 (EMBL:AE001590) (160 aa) fasta scores: E(): 9.8e-05, 30.43% id in 138 aa; hypothetical protein complement(383143..383634) Chlamydophila abortus S26/3 3338131 YP_219745.1 CDS CAB330 NC_004552.2 383995 384426 R Note, weakly similar to CAB331; hypothetical protein complement(383995..384426) Chlamydophila abortus S26/3 3338132 YP_219746.1 CDS CAB331 NC_004552.2 384587 384988 R Note weakly similar to CAB330; hypothetical protein complement(384587..384988) Chlamydophila abortus S26/3 3338133 YP_219747.1 CDS CAB332 NC_004552.2 385073 385822 R transformation of prophobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(385073..385822) Chlamydophila abortus S26/3 3338134 YP_219748.1 CDS radA NC_004552.2 385800 387167 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(385800..387167) Chlamydophila abortus S26/3 3338073 YP_219749.1 CDS rnc NC_004552.2 387127 387840 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(387127..387840) Chlamydophila abortus S26/3 3338091 YP_219750.1 CDS CAB335 NC_004552.2 387960 388424 D Similar to Chlamydia pneumoniae ct296 hypothetical protein cpn0055 or cpj0055 or cp0720 SWALL:Q9Z9C6 (EMBL:AE001590) (154 aa) fasta scores: E(): 7.6e-39, 62.09% id in 153 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 387960..388424 Chlamydophila abortus S26/3 3338135 YP_219751.1 CDS CAB336 NC_004552.2 388519 390324 D Similar to Mycoplasma pirum phosphomannomutase ManB SWALL:MANB_MYCPI (SWALL:P47723) (544 aa) fasta scores: E(): 1e-39, 31.31% id in 546 aa and to Chlamydia pneumoniae phosphomannomutase MrsA or cpn0056 SWALL:Q9Z9C5 (EMBL:AE001591) (598 aa) fasta scores: E(): 2.7e-148, 64.2% id in 595 aa, and to Streptococcus thermophilus phosphoglucomutase PgmA SWALL:Q9K560 (EMBL:AJ243290) (572 aa) fasta scores: E(): 2e-60, 37.2% id in 559 aa; phosphomannomutase 388519..390324 Chlamydophila abortus S26/3 3338136 YP_219752.1 CDS CAB337 NC_004552.2 390444 391067 D Similar to many Prokaryotic and Eukaryotic dismutases including: Chlamydia pneumoniae superoxide dismutase [mn] SodA or cpn0057 or cp0718 SWALL:SODM_CHLPN (SWALL:Q9Z9C4) (207 aa) fasta scores: E(): 2.7e-67, 78.81% id in 203 aa and to Drosophila melanogaster superoxide dismutase [mn], mitochondrial precursor sod2 or cg8905 SWALL:SODM_DROME (SWALL:Q00637) (217 aa) fasta scores: E(): 7e-43, 55% id in 200 aa; superoxide dismutase 390444..391067 Chlamydophila abortus S26/3 3338137 YP_219753.1 CDS CAB338 NC_004552.2 391148 392074 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 391148..392074 Chlamydophila abortus S26/3 3338138 YP_219754.1 CDS dut NC_004552.2 392117 392560 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 392117..392560 Chlamydophila abortus S26/3 3337655 YP_219755.1 CDS CAB339 NC_004552.2 392562 393038 D Similar to many phosphotransferase system proteins including: Chlamydia muridarum PTS system, IIa component tc0564 SWALL:Q9PKA3 (EMBL:AE002324) (165 aa) fasta scores: E(): 2.2e-35, 61.93% id in 155 aa, and to Thermoanaerobacter tengcongensis phosphotransferase system mannitol/fructose-specific iia domain ptsn3 or tte2586 SWALL:Q8R738 (EMBL:AE013199) (151 aa) fasta scores: E(): 5.5e-11, 33.33% id in 141 aa; PTS system, IIA component 392562..393038 Chlamydophila abortus S26/3 3338139 YP_219756.1 CDS CAB340 NC_004552.2 393043 393723 D Similar to Chlamydia pneumoniae pts IIa protein with hth DNA-binding domain ptsn_2 or cp0714 SWALL:Q9JS03 (EMBL:AE002230) (225 aa) fasta scores: E(): 1e-66, 75.77% id in 227 aa, and to Escherichia coli, and Shigella flexneri nitrogen regulatory IIa protein PtsN or rpop or b3204 or sf3244 or s3462 SWALL:PTSN_ECOLI (SWALL:P31222) (163 aa) fasta scores: E(): 2.5e-06, 34.92% id in 126 aa; PTS system, IIA component 393043..393723 Chlamydophila abortus S26/3 3338140 YP_219757.1 CDS CAB341 NC_004552.2 393822 395228 D Similar to Chlamydia pneumoniae ct289 hypothetical protein cpn0062 or cpj0062 or cp0713 SWALL:Q9Z9B9 (EMBL:AE001591) (461 aa) fasta scores: E(): 4.2e-38, 35.71% id in 490 aa; hypothetical protein 393822..395228 Chlamydophila abortus S26/3 3338141 YP_219758.1 CDS CAB342 NC_004552.2 395408 397138 D Similar to many including: Chlamydia pneumoniae hypothetical protein cpn0065/cp0709/cpj0065 cpn0065 or cp0709 or cpj0065 SWALL:Y065_CHLPN (SWALL:Q9Z9B6) (576 aa) fasta scores: E(): 1.8e-33, 28.96% id in 587 aa; hypothetical protein 395408..397138 Chlamydophila abortus S26/3 3338142 YP_219759.1 CDS CAB343 NC_004552.2 397162 397776 R Similar in parts to Chlamydia pneumoniae hypothetical protein cpn0440/cp0313/cpj0440 cpn0440 or cp0313 or cpj0440 SWALL:Y440_CHLPN (SWALL:Q9Z8A3) (212 aa) fasta scores: E(): 2.4e-13, 32.4% id in 179 aa. Note the alternative possible translational start site at codon 6; hypothetical protein complement(397162..397776) Chlamydophila abortus S26/3 3338143 YP_219760.1 CDS CAB344 NC_004552.2 397773 398390 R Similar in parts to Chlamydia pneumoniae hypothetical protein cpn0439 cpn0439 or cpj0439 or cp0314 SWALL:Q9Z8A4 (EMBL:AE001627) (175 aa) fasta scores: E(): 2.5e-09, 28.14% id in 167 aa. Note the alternative possible translational start site at codon 5; hypothetical protein complement(397773..398390) Chlamydophila abortus S26/3 3338144 YP_219761.1 CDS mnmA NC_004552.2 398427 399515 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 398427..399515 Chlamydophila abortus S26/3 3337499 YP_219762.1 CDS clpC NC_004552.2 399493 402030 R Similar to Bacillus subtilis negative regulator of genetic competence ClpC/MecB SWALL:CLPC_BACSU (SWALL:P37571) (810 aa) fasta scores: E(): 2.7e-125, 51.97% id in 810 aa and to Chlamydia pneumoniae probable ATP-dependent clp protease ATP-binding subunit clpc or cpn0437 or cp0316 SWALL:CLPC_CHLPN (SWALL:Q9Z8A6) (845 aa) fasta scores: E(): 0, 92.43% id in 846 aa; negative regulator of genetic competence clpc/mecb complement(399493..402030) Chlamydophila abortus S26/3 3337632 YP_219763.1 CDS CAB347 NC_004552.2 402198 402932 D Similar to Chlamydia pneumoniae lipoate protein ligase-like protein lpla_1 or cpn0436 or cp0317 SWALL:Q9Z8A7 (EMBL:AE001626) (239 aa) fasta scores: E(): 5.3e-58, 62.82% id in 234 aa and to Bacillus halodurans lipoate protein ligase bh2812 SWALL:Q9K938 (EMBL:AP001516) (276 aa) fasta scores: E(): 4.9e-10, 29.06% id in 203 aa. Contains a iotin/lipoate A/B protein ligase motif; hypothetical protein 402198..402932 Chlamydophila abortus S26/3 3338145 YP_219764.1 CDS CAB348 NC_004552.2 402923 404353 D Similar to Chlamydia pneumoniae phospholipase D superfamily cpn0435 or cpj0435 or cp0318 SWALL:Q9Z8A8 (EMBL:AE001626) (476 aa) fasta scores: E(): 5.1e-104, 51.68% id in 476 aa> Also similar in the C-terminus to several others e.g. Clostridium perfringens cardiolipin synthetase Cls or ClsD or cpe1430 SWALL:CLS_CLOPE (SWALL:Q9ZNC6) (476 aa) fasta scores: E(): 0.0027, 26.84% id in 190 aa; hypothetical protein 402923..404353 Chlamydophila abortus S26/3 3338146 YP_219765.1 CDS CAB349 NC_004552.2 404474 406546 D Similar to Chlamydia muridarum hypothetical protein Tc0556 tc0556 SWALL:Q9PKB1 (EMBL:AE002323) (690 aa) fasta scores: E(): 1.5e-154, 56.24% id in 681 aa; hypothetical protein 404474..406546 Chlamydophila abortus S26/3 3338147 YP_219766.1 CDS CAB350 NC_004552.2 406546 406887 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 406546..406887 Chlamydophila abortus S26/3 3338148 YP_219767.1 CDS CAB351 NC_004552.2 407009 407323 D Similar to Chlamydophila caviae hypothetical protein cca00360 SWALL:Q823P7 (EMBL:AE016995) (97 aa) fasta scores: E(): 1.1e-22, 67.74% id in 93 aa; hypothetical protein 407009..407323 Chlamydophila abortus S26/3 3338149 YP_219768.1 CDS CAB351A NC_004552.2 407313 407645 D Similar to Chlamydophila caviae hypothetical protein cca00361 SWALL:Q823P6 (EMBL:AE016995) (110 aa) fasta scores: E(): 1.3e-33, 79.8% id in 104 aa, and to Chlamydia pneumoniae hypothetical protein cpn0431 cpn0431 or cpj0431 or cp0322 or cpb0447 SWALL:Q9Z8B2 (EMBL:AE001626) (111 aa) fasta scores: E(): 0.0086, 30.39% id in 102 aa; hypothetical protein 407313..407645 Chlamydophila abortus S26/3 3338150 YP_219769.1 CDS nqrE NC_004552.2 407646 408440 R Similar to Haemophilus influenzae Na+-translocating NADH-quinone reductase subunit E, NqrE or hi0170 SWALL:NQRE_HAEIN (SWALL:P71342) (198 aa) fasta scores: E(): 3.3e-31, 48.48% id in 198 aa, and to Pasteurella multocida Na+-translocating NADH-quinone reductase subunit E NqrE or pm1332 SWALL:NQRE_PASMU (SWALL:Q9CLA7) (198 aa) fasta scores: E(): 1.3e-32, 50% id in 198 aa. Note the C-terminal extension of this protein.; Na(+)-translocating NADH-quinone reductase subunit E complement(407646..408440) Chlamydophila abortus S26/3 3337470 YP_219770.1 CDS nqrD NC_004552.2 408445 409086 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(408445..409086) Chlamydophila abortus S26/3 3337469 YP_219771.1 CDS nqrC NC_004552.2 409073 410035 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(409073..410035) Chlamydophila abortus S26/3 3337468 YP_219772.1 CDS nqrB NC_004552.2 410039 411550 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(410039..411550) Chlamydophila abortus S26/3 3337467 YP_219773.1 CDS CAB357 NC_004552.2 412191 412784 R Similar to Chlamydia pneumoniae ct276 hypothetical protein cpn0425 or cpj0425 or cp0328 SWALL:Q9Z8B8 (EMBL:AE001625) (195 aa) fasta scores: E(): 1e-45, 72.22% id in 198 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(412191..412784) Chlamydophila abortus S26/3 3338152 YP_219774.1 CDS dnaA NC_004552.2 412801 414153 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA complement(412801..414153) Chlamydophila abortus S26/3 3338153 YP_219775.1 CDS CAB359 NC_004552.2 414346 414777 R Similar to Chlamydia trachomatis hypothetical protein Ct274 SWALL:O84276 (EMBL:AE001300) (139 aa) fasta scores: E(): 3.6e-46, 88.63% id in 132 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(414346..414777) Chlamydophila abortus S26/3 3338154 YP_219776.1 CDS CAB360 NC_004552.2 414781 415326 R Similar to Chlamydia pneumoniae hypothetical protein cpn0422/cp0331/cpj0422 cpn0422 or cp0331 or cpj0422 SWALL:Y422_CHLPN (SWALL:Q9Z8C1) (181 aa) fasta scores: E(): 5e-52, 75.13% id in 181 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(414781..415326) Chlamydophila abortus S26/3 3338155 YP_219777.1 CDS mraW NC_004552.2 415500 416396 D Similar to Escherichia coli, and Escherichia coli O157:H7 S-adenosyl-methyltransferase MraW mraw or b0082 or z0092 or ecs0086 SWALL:MRAW_ECOLI (SWALL:P18595) (313 aa) fasta scores: E(): 5.1e-25, 38.48% id in 317 aa and to Rickettsia prowazekii S-adenosyl-methyltransferase MraW or rp569 SWALL:MRAW_RICPR (SWALL:Q9ZCY2) (306 aa) fasta scores: E(): 2.5e-27, 38.63% id in 308 aa; S-adenosyl-methyltransferase MraW 415500..416396 Chlamydophila abortus S26/3 3338156 YP_219778.1 CDS CAB361A NC_004552.2 416393 416680 D Similar to Chlamydia muridarum hypothetical protein Tc0543 SWALL:Q9PKC3 (EMBL:AE002322) (95 aa) fasta scores: E(): 2.3e-23, 64.21% id in 95 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 416393..416680 Chlamydophila abortus S26/3 3337369 YP_219779.1 CDS CAB362 NC_004552.2 416667 418616 D Similar to Neisseria meningitidis penicillin-binding protein 2 PenA or Nma2072 or Nmb0413 SWALL:PBP2_NEIMA (SWALL:P11882) (581 aa) fasta scores: E(): 1.1e-11, 28.75% id in 546 aa, and to Buchnera aphidicola peptidoglycan synthetase FtsI or bu222 SWALL:FTSI_BUCAI (SWALL:P57317) (579 aa) fasta scores: E(): 2e-10, 26.57% id in 621 aa; penicillin-binding protein 416667..418616 Chlamydophila abortus S26/3 3337370 YP_219780.1 CDS murE NC_004552.2 419373 420824 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 419373..420824 Chlamydophila abortus S26/3 3337461 YP_219781.1 CDS CAB364 NC_004552.2 420817 421536 D Weakly similar to Thermoanaerobacter tengcongensis N-acetylmuramoyl-L-alanine amidase AmiC2 or tte2424 SWALL:Q8R7I3 (EMBL:AE013184) (219 aa) fasta scores: E(): 1.9e-18, 35.74% id in 207 aa and to Bacillus subtilis N-acetylmuramoyl-L-alanine amidase CwlB precursor SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 6.8e-16, 34.06% id in 182 aa; N-acetylmuramoyl-L-alanine amidase 420817..421536 Chlamydophila abortus S26/3 3337372 YP_219782.1 CDS ihfA NC_004552.2 421924 422226 D Similar to many including: Haemophilus influenzae integration host factor alpha-subunit IhfA or HimA or Hi1313 SWALL:IHFA_HAEIN (SWALL:P43723) (96 aa) fasta scores: E(): 1.7e-06, 30.85% id in 94 aa and to Chlamydia pneumoniae probable DNA-binding protein HU Hup or cpn0416 or cp0338 SWALL:DBH_CHLPN (SWALL:Q9Z8C7) (100 aa) fasta scores: E(): 2.7e-36, 98% id in 100 aa; integration host factor alpha-subunit 421924..422226 Chlamydophila abortus S26/3 3337998 YP_219783.1 CDS CAB366 NC_004552.2 422353 423537 D Similar to several proteins of undefined function e.g. Chlamydia pneumoniae hypothetical protein Cp0339 SWALL:Q9K294 (EMBL:AE002196) (404 aa) fasta scores: E(): 3.1e-101, 63.33% id in 390 aa and to Chlamydia muridarum hypothetical protein Tc0537 tc0537 SWALL:Q9PKC8 (EMBL:AE002322) (393 aa) fasta scores: E(): 5.8e-89, 56.88% id in 392 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 422353..423537 Chlamydophila abortus S26/3 3337373 YP_219784.1 CDS accA NC_004552.2 423642 424616 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 423642..424616 Chlamydophila abortus S26/3 3337970 YP_219785.1 CDS CAB368 NC_004552.2 424582 426549 D Similar to Bacillus subtilis hypothetical ABC transporter ATP-binding protein YfiC SWALL:YFIC_BACSU (SWALL:P54719) (604 aa) fasta scores: E(): 6.9e-46, 29.83% id in 590 aa and to Escherichia coli, and Escherichia coli O157:H7 lipid a export ATP-binding/permease MsbA or b0914 SWALL:MSBA_ECOLI (SWALL:P27299) (582 aa) fasta scores: E(): 1e-42, 28.97% id in 566 aa; ABC transporter, ATP-binding component 424582..426549 Chlamydophila abortus S26/3 3337374 YP_219786.2 CDS CAB369 NC_004552.2 426563 427213 R Similar to Chlamydia trachomatis hypothetical protein Ct263 SWALL:O84265 (EMBL:AE001299) (196 aa) fasta scores: E(): 3.4e-19, 43.21% id in 162 aa. Note the differing N-termini of the other Chlamydia orthologues. An equivalent translational start site is present (complement 427211..427213) but this would lead to an uncommon overlap of 21 bps with the upstream CDS.; hypothetical protein complement(426563..427213) Chlamydophila abortus S26/3 3337375 YP_219787.1 CDS CAB370 NC_004552.2 427194 427967 R Similar to Chlamydia trachomatis hypothetical protein Ct262 SWALL:O84264 (EMBL:AE001299) (256 aa) fasta scores: E(): 8.2e-55, 54.72% id in 254 aa, and to Deinococcus radiodurans hypothetical protein Dr1011 SWALL:Q9RVL6 (EMBL:AE001953) (301 aa) fasta scores: E(): 6.5e-26, 35.15% id in 256 aa; hypothetical protein complement(427194..427967) Chlamydophila abortus S26/3 3337376 YP_219788.1 CDS dnaQ NC_004552.2 427964 428650 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(427964..428650) Chlamydophila abortus S26/3 3337650 YP_219789.1 CDS CAB372 NC_004552.2 428666 429139 R Similar to Chlamydia muridarum hypothetical protein Tc0531 SWALL:Q9PKD4 (EMBL:AE002322) (159 aa) fasta scores: E(): 1.1e-50, 75.79% id in 157 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(428666..429139) Chlamydophila abortus S26/3 3337377 YP_219790.1 CDS CAB373 NC_004552.2 429171 429677 R Similar to Chlamydia pneumoniae ct102 hypothetical protein cpn0408 or cpj0408 or cp0346 SWALL:Q9Z8D5 (EMBL:AE001624) (159 aa) fasta scores: E(): 9.6e-33, 63.39% id in 153 aa; hypothetical protein complement(429171..429677) Chlamydophila abortus S26/3 3337378 YP_219791.1 CDS CAB374 NC_004552.2 430029 430916 D Similar to many proteins of undefined function including: Chlamydia pneumoniae HAD-superfamily hydrolase/phosphatase cpn0407 or cpj0407 or cp0348 SWALL:Q9Z8D6 (EMBL:AE001624) (295 aa) fasta scores: E(): 3.5e-69, 60.55% id in 289 aa and to Staphylococcus epidermidis conserved hypothetical protein se0329 SWALL:Q8CTS0 (EMBL:AE016745) (292 aa) fasta scores: E(): 0.0001, 21.35% id in 295 aa; hypothetical protein 430029..430916 Chlamydophila abortus S26/3 3337379 YP_219792.1 CDS CAB375 NC_004552.2 430903 431802 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase complement(430903..431802) Chlamydophila abortus S26/3 3337380 YP_219793.1 CDS CAB376 NC_004552.2 432069 434267 D Note rich in the aa Leu and Ser; hypothetical protein 432069..434267 Chlamydophila abortus S26/3 3337381 YP_219794.1 CDS rluC NC_004552.2 436706 437530 R Similar to Rickettsia prowazekii ribosomal large subunit pseudouridine synthase C RluC or rp258 SWALL:RLUC_RICPR (SWALL:Q9ZDR7) (303 aa) fasta scores: E(): 1.2e-15, 29.82% id in 285 aa and to Chlamydia trachomatis predicted pseudouridine synthetase YceC or ct106 SWALL:O84108 (EMBL:AE001284) (303 aa) fasta scores: E(): 8.4e-71, 61.13% id in 265 aa; ribosomal large subunit pseudouridine synthase C complement(436706..437530) Chlamydophila abortus S26/3 3338089 YP_219795.1 CDS mutY NC_004552.2 437579 438688 D Weakly similar to Escherichia coli A/G-specific adenine glycosylase MutY or MicA or b2961 SWALL:MUTY_ECOLI (SWALL:P17802) (350 aa) fasta scores: E(): 1.5e-31, 31.09% id in 312 aa. Note all 4 iron-sulfur (4fe-4s) binding sites are conserved between these two orthologues. Also similar to Bacillus halodurans adenine glycosylase bh0931 SWALL:Q9KEC2 (EMBL:AP001510) (372 aa) fasta scores: E(): 2.4e-44, 36.74% id in 362 aa; A/G-specific adenine glycosylase 437579..438688 Chlamydophila abortus S26/3 3337464 YP_219796.1 CDS CAB381 NC_004552.2 438685 439080 D Similar to the N-terminal domain of Haemophilus influenzae MazG protein MazG or hi0460 SWALL:MAZG_HAEIN (SWALL:P44723) (263 aa) fasta scores: E(): 2.6e-07, 31.45% id in 124 aa, and to Chlamydia pneumoniae ct255 hypothetical protein cpn0401 or cpj0401 or cp0354 SWALL:Q9Z8E2 (EMBL:AE001624) (130 aa) fasta scores: E(): 4.5e-21, 50% id in 126 aa; hypothetical protein 438685..439080 Chlamydophila abortus S26/3 3337383 YP_219797.1 CDS CAB382 NC_004552.2 439261 440040 R Similar to many proteins of undefined function including: Oceanobacillus iheyensis hypothetical conserved protein ob3317 SWALL:Q8ELB4 (EMBL:AP004604) (234 aa) fasta scores: E(): 3.7e-06, 26.33% id in 224 aa, and to Bacillus anthracis CAAX amino terminal protease Ba5243 SWALL:Q81XJ4 (EMBL:AE017040) (227 aa) fasta scores: E(): 1.9e-05, 27.43% id in 226 aa; hypothetical protein complement(439261..440040) Chlamydophila abortus S26/3 3337384 YP_219798.1 CDS CAB383 NC_004552.2 440044 440736 R Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct253 hypothetical protein Cpn0399 or cpj0399 or cp0356 SWALL:Q9Z8E4 (EMBL:AE001624) (215 aa) fasta scores: E(): 2.9e-61, 73.27% id in 217 aa. Note the differing N-termini.; hypothetical protein complement(440044..440736) Chlamydophila abortus S26/3 3337385 YP_219799.1 CDS CAB385 NC_004552.2 442479 443528 R Note the differing N-termini of the product of this CDS compared to the other Chlamydiaceae.; hypothetical protein complement(442479..443528) Chlamydophila abortus S26/3 3337388 YP_219800.1 CDS CAB386 NC_004552.2 443928 444677 D Similar to many proteins including: Myxococcus xanthus protein phosphatase 1 Pph1 SWALL:Q9KIU5 (EMBL:AF223364) (254 aa) fasta scores: E(): 2.7e-26, 36.88% id in 244 aa and to Bacillus anthracis protein phosphatase 2c-family protein ba4001 SWALL:Q81WH5 (EMBL:AE017036) (250 aa) fasta scores: E(): 1.4e-23, 39.07% id in 238 aa; phosphatase 443928..444677 Chlamydophila abortus S26/3 3337389 YP_219801.1 CDS CAB387 NC_004552.2 444701 445816 D Similar to many aminotransferases including: Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri cysteine desulfurase IscS or b2530 or c3056 or z3797 or ecs3396 or sf2577 or s2749 SWALL:ISCS_ECOLI (SWALL:P39171) (404 aa) fasta scores: E(): 9.4e-25, 30.1% id in 382 aa and to Neisseria meningitidis cysteine desulfurase IscS or nmb1379 SWALL:ISCS_NEIMB (SWALL:Q9JYY0) (404 aa) fasta scores: E(): 8.1e-25, 30.72% id in 384 aa; cysteine desulfurase 444701..445816 Chlamydophila abortus S26/3 3337390 YP_219802.1 CDS CAB388 NC_004552.2 445820 447034 R Similar to many proteins of undefined function inluding: Coxiella burnetii hypothetical protein Cbu0452 SWALL:Q83E77 (EMBL:AE016961) (417 aa) fasta scores: E(): 2.2e-12, 21.79% id in 413 aa and to Escherichia coli hypothetical protein YfjD or b2612/b2613 SWALL:YFJD_ECOLI (SWALL:P37908) (428 aa) fasta scores: E(): 3.4e-09, 21.22% id in 410 aa; membrane transport protein complement(445820..447034) Chlamydophila abortus S26/3 3337391 YP_219803.1 CDS CAB389 NC_004552.2 447027 448262 R Similar to many including: Yersinia pestis membrane protein Ypo3298 or Y0890 SWALL:Q8ZBU4 (EMBL:AJ414156) (427 aa) fasta scores: E(): 1.9e-21, 24.1% id in 419 aa and Escherichia coli hypothetical protein YfjD or b2612/b2613 SWALL:YFJD_ECOLI (SWALL:P37908) (428 aa) fasta scores: E(): 2.9e-21, 23.98% id in 417 aa; membrane transport protein complement(447027..448262) Chlamydophila abortus S26/3 3337392 YP_219804.1 CDS CAB390 NC_004552.2 448272 448601 R Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct038 hypothetical protein cpn0393 or cpj0393 or cp0362 SWALL:Q9Z8F0 (EMBL:AE001623) (115 aa) fasta scores: E(): 8.7e-20, 50.9% id in 110 aa; hypothetical protein complement(448272..448601) Chlamydophila abortus S26/3 3337393 YP_219805.1 CDS dcd NC_004552.2 448611 449183 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(448611..449183) Chlamydophila abortus S26/3 3337641 YP_219806.1 CDS ruvB NC_004552.2 449788 450801 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 449788..450801 Chlamydophila abortus S26/3 3338196 YP_219807.1 CDS CAB393 NC_004552.2 450798 451613 D Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae hypothetical protein cpn0389/cp0366/cpj0389 cpn0389 or cp0366 or cpj0389 SWALL:Y389_CHLPN (SWALL:Q9Z8F4) (272 aa) fasta scores: E(): 3.4e-84, 72.18% id in 266 aa; hypothetical protein 450798..451613 Chlamydophila abortus S26/3 3337394 YP_219808.1 CDS CAB394 NC_004552.2 451610 453601 R Similar to Prokaryotic and Eukaryotic proteins including: Mycobacterium tuberculosis glycogen operon protein GlgX homolog or rv1564c or mt1615 or mtcy48.01 SWALL:GLGX_MYCTU (SWALL:Q10767) (721 aa) fasta scores: E(): 8.4e-72, 40.06% id in 649 aa, Pirellula sp glycogen operon protein Glgx-2 or rb9292 SWALL:CAD76180 (EMBL:BX294149) (733 aa) fasta scores: E(): 8.7e-95, 44.75% id in 601 aa and Arabidopsis thaliana isoamylase at4g09020 SWALL:Q8RWW6 (EMBL:AY091058) (764 aa) fasta scores: E(): 1.4e-89, 45.66% id in 635 aa; glycosyl hydrolase complement(451610..453601) Chlamydophila abortus S26/3 3337395 YP_219809.1 CDS CAB395 NC_004552.2 453733 454233 D Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct043 hypothetical protein cpn0387 or cpj0387 or cp0368 SWALL:Q9Z8F6 (EMBL:AE001623) (166 aa) fasta scores: E(): 9.3e-65, 98.79% id in 166 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 453733..454233 Chlamydophila abortus S26/3 3337396 YP_219810.1 CDS CAB396 NC_004552.2 454886 455362 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 454886..455362 Chlamydophila abortus S26/3 3337397 YP_219811.1 CDS CAB397 NC_004552.2 455400 456902 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 455400..456902 Chlamydophila abortus S26/3 3337398 YP_219812.1 CDS CAB398 NC_004552.2 457044 457508 D Similar to Bordetella pertussis histone H1 SWALL:Q45370 (EMBL:L37438) (182 aa) fasta scores: E(): 7e-09, 41.13% id in 141 aa and to Xanthomonas axonopodis histone h1 xac3058 SWALL:Q8PI40 (EMBL:AE011948) (155 aa) fasta scores: E(): 2e-08, 52.72% id in 110 aa; histone-like protein 457044..457508 Chlamydophila abortus S26/3 3337399 YP_219813.1 CDS CAB399 NC_004552.2 457674 458609 D Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct047 hypothetical protein cpn0383 or cpj0383 or cp0372 SWALL:Q9Z8G0 (EMBL:AE001622) (315 aa) fasta scores: E(): 1.3e-62, 51.93% id in 310 aa; hypothetical protein 457674..458609 Chlamydophila abortus S26/3 3337400 YP_219814.1 CDS CAB400 NC_004552.2 458606 459316 D Similar to many proteins of undefined function including: Ralstonia solanacearum probable transmembrane protein Rsc1045 or Rs04205 SWALL:Q8Y0J8 (EMBL:AL646062) (243 aa) fasta scores: E(): 1.4e-20, 37.7% id in 244 aa and to Neisseria meningitidis hypothetical protein Nmb1908 SWALL:Q9JXS3 (EMBL:AE002540) (241 aa) fasta scores: E(): 1.3e-16, 30.93% id in 236 aa; hypothetical protein 458606..459316 Chlamydophila abortus S26/3 3337401 YP_219815.1 CDS CAB401 NC_004552.2 459372 459854 R doubtful CDS which is similar in part to Chlamydophila caviae hypothetical protein cca00415 SWALL:Q823J5 (EMBL:AE016995) (77 aa) fasta scores: E(): 7.1e-09, 58.18% id in 55 aa; hypothetical protein complement(459372..459854) Chlamydophila abortus S26/3 3337402 YP_219816.1 CDS CAB402 NC_004552.2 459997 461358 D Weakly similar to several Prokaryotic and Eukaryotic proteins including: Chlamydia trachomatis hypothetical protein Ct049 SWALL:O84052 (EMBL:AE001279) (490 aa) fasta scores: E(): 2.1e-15, 30.13% id in 521 aa, and to Matricaria chamomilla thiol protease SWALL:Q9SP93 (EMBL:AF182079) (501 aa) fasta scores: E(): 1.2, 21.01% id in 395 aa; hypothetical protein 459997..461358 Chlamydophila abortus S26/3 3337403 YP_219817.1 CDS CAB403 NC_004552.2 461409 462794 R Similar to several Chlamydia proteins of undefined function including: Chlamydia muridarum hypothetical protein Tc0320 tc0320 SWALL:Q9PKZ0 (EMBL:AE002299) (397 aa) fasta scores: E(): 2.2e-08, 29.84% id in 439 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(461409..462794) Chlamydophila abortus S26/3 3337404 YP_219818.1 CDS CAB404 NC_004552.2 462861 463982 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(462861..463982) Chlamydophila abortus S26/3 3337405 YP_219819.1 CDS CAB405 NC_004552.2 463972 464418 R Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct053 hypothetical protein cpn0379 or cpj0379 or cp0377 SWALL:Q9Z8G4 (EMBL:AE001622) (148 aa) fasta scores: E(): 1.4e-42, 84.45% id in 148 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(463972..464418) Chlamydophila abortus S26/3 3337406 YP_219820.1 CDS sucA NC_004552.2 464573 467299 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 464573..467299 Chlamydophila abortus S26/3 3338210 YP_219821.1 CDS sucB NC_004552.2 467296 468393 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 467296..468393 Chlamydophila abortus S26/3 3338211 YP_219822.1 CDS CAB408 NC_004552.2 468404 469147 R Similar to several proteins of undefined function including: Chlamydia trachomatis hypothetical protein Ct056 SWALL:O84059 (EMBL:AE001280) (243 aa) fasta scores: E(): 3.2e-56, 60.97% id in 246 aa, and to Brucella melitensis hypothetical cytosolic protein Bmei0486 bmei0486 SWALL:Q8YIF8 (EMBL:AE009491) (265 aa) fasta scores: E(): 1.9e-12, 28.06% id in 196 aa; hypothetical protein complement(468404..469147) Chlamydophila abortus S26/3 3337407 YP_219823.1 CDS CAB409 NC_004552.2 469161 470981 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-clclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; these proteins appear to consist of duplicate domains as compared to Escherichia coli IspG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(469161..470981) Chlamydophila abortus S26/3 3337408 YP_219824.1 CDS CAB410 NC_004552.2 471289 472470 R Similar to Chlamydophila caviae hypothetical protein cca00424 SWALL:Q823I6 (EMBL:AE016995) (400 aa) fasta scores: E(): 6.9e-93, 63.01% id in 392 aa and to Thermoanaerobacter tengcongensis O-acetylhomoserine sulfhydrylase SWALL:Q8R872 (EMBL:AE013162) (427 aa) fasta scores: E(): 2.5, 28.19% id in 188 aa; hypothetical protein complement(471289..472470) Chlamydophila abortus S26/3 3337409 YP_219825.1 CDS CAB411 NC_004552.2 472566 473588 R Similar to several Chlamydia proteins of undefined function including: Chlamydophila caviae hypothetical protein cca00425 SWALL:Q823I5 (EMBL:AE016995) (324 aa) fasta scores: E(): 4.5e-78, 63.3% id in 327 aa; hypothetical protein complement(472566..473588) Chlamydophila abortus S26/3 3337410 YP_219826.1 CDS CAB412 NC_004552.2 473961 475139 R Similar to several Chlamydia proteins of undefined function including: Chlamydophila caviae hypothetical protein cca00426 SWALL:Q823I4 (EMBL:AE016995) (379 aa) fasta scores: E(): 7e-44, 52.77% id in 396 aa; hypothetical protein complement(473961..475139) Chlamydophila abortus S26/3 3337411 YP_219827.1 CDS CAB413 NC_004552.2 475329 475604 R Similar to Prokaryotic and Eukaryotic ferredoxins including: Raphanus sativus ferredoxin, root r-b2 SWALL:FER2_RAPSA (SWALL:P14937) (98 aa) fasta scores: E(): 0.0044, 37.68% id in 69 aa and hodobacter capsulatus ferredoxin IV FdxC SWALL:FER4_RHOCA (SWALL:P16022) (95 aa) fasta scores: E(): 8.3e-08, 39.13% id in 92 aa; ferredoxin complement(475329..475604) Chlamydophila abortus S26/3 3337412 YP_219828.1 CDS flhA NC_004552.2 475882 477639 D Similar to Salmonella typhimurium flagellar biosynthesis protein FlhA or stm1913 SWALL:FLHA_SALTY (SWALL:P40729) (692 aa) fasta scores: E(): 1.9e-31, 25.07% id in 674 aa, and to Caulobacter crescentus flagellar biosynthesis protein FlhA SWALL:FLHA_CAUCR (SWALL:Q03845) (700 aa) fasta scores: E(): 1.3e-32, 27.38% id in 672 aa; type III secretion system protein 475882..477639 Chlamydophila abortus S26/3 3338045 YP_219829.1 CDS CAB415 NC_004552.2 477744 478517 D expressed in response to temperature increase; may be involved in expression of genes involved in the developmental cycle of Chlamydia; RNA polymerase sigma factor sigma-28 477744..478517 Chlamydophila abortus S26/3 3337413 YP_219830.1 CDS CAB416 NC_004552.2 478514 478807 R Similar to Chlamydophila caviae hypothetical protein cca00430 SWALL:Q823I0 (EMBL:AE016995) (92 aa) fasta scores: E(): 4.5e-12, 55.4% id in 74 aa; hypothetical protein complement(478514..478807) Chlamydophila abortus S26/3 3337414 YP_219831.1 CDS tyrS NC_004552.2 478968 480206 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 478968..480206 Chlamydophila abortus S26/3 3338237 YP_219832.1 CDS gnd NC_004552.2 480220 481674 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 480220..481674 Chlamydophila abortus S26/3 3337737 YP_219833.1 CDS lepA NC_004552.2 481865 483673 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(481865..483673) Chlamydophila abortus S26/3 3337438 YP_219834.1 CDS CAB420 NC_004552.2 483905 485212 D Similar to several Chlamydial proteins of undefined function including: Chlamydophila caviae hypothetical protein cca00434 SWALL:Q823H6 (EMBL:AE016995) (451 aa) fasta scores: E(): 1.6e-99, 58.39% id in 423 aa; hypothetical protein 483905..485212 Chlamydophila abortus S26/3 3337415 YP_219835.1 CDS CAB421 NC_004552.2 485295 486893 R Similar to Rickettsia typhi ADP/ATP carrier protein tlc1 SWALL:Q83W30 (EMBL:AJ507301) (498 aa) fasta scores: E(): 9.1e-82, 43.97% id in 498 aa and Arabidopsis thaliana chloroplast ADP/ATP carrier protein 1, chloroplast precursor AatP1 or at1g80300 or f5i6.5 SWALL:TLC1_ARATH (SWALL:Q39002) (624 aa) fasta scores: E(): 2.9e-98, 52.81% id in 498 aa; ADP/ATP carrier protein complement(485295..486893) Chlamydophila abortus S26/3 3337416 YP_219836.1 CDS CAB422 NC_004552.2 487114 487626 R Similar to several Chlamydia proteins of undefined function including: Chlamydophila caviae hypothetical protein cca00436 SWALL:Q823H4 (EMBL:AE016995) (167 aa) fasta scores: E(): 2e-61, 97.6% id in 167 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(487114..487626) Chlamydophila abortus S26/3 3337417 YP_219837.1 CDS CAB423 NC_004552.2 488113 489078 D Similar to Bacillus subtilis manganese-binding lipoprotein MntA precursor SWALL:MNTA_BACSU (SWALL:O34385) (306 aa) fasta scores: E(): 1.3e-15, 25.56% id in 309 aa and Pirellula sp manganese ABC transporter substrate binding protein mtsa or rb12440 SWALL:CAD77589 (EMBL:BX294155) (366 aa) fasta scores: E(): 1.5e-16, 29.37% id in 320 aa; ABC transporter, substrate binding lipoprotein 488113..489078 Chlamydophila abortus S26/3 3337418 YP_219838.1 CDS CAB424 NC_004552.2 489075 489854 D Similar to Bacillus subtilis manganese transport system ATP-binding protein MntB SWALL:MNTB_BACSU (SWALL:O34338) (250 aa) fasta scores: E(): 2.9e-35, 46.12% id in 245 aa, and to Pirellula sp manganese transport system ATP-binding protein Rb12438 SWALL:CAD77587 (EMBL:BX294155) (280 aa) fasta scores: E(): 6.9e-37, 46.18% id in 249 aa; ABC transporter, ATP-binding component 489075..489854 Chlamydophila abortus S26/3 3337419 YP_219839.1 CDS CAB425 NC_004552.2 489855 491204 D Similar to Bacillus subtilis manganese transport system membrane protein MntC SWALL:MNTC_BACSU (SWALL:O35024) (435 aa) fasta scores: E(): 2.7e-16, 23.52% id in 391 aa and Pirellula sp manganese ABC transporter permease Rb12437 SWALL:CAD77586 (EMBL:BX294155) (444 aa) fasta scores: E(): 2.6e-13, 23.51% id in 421 aa; ABC transporter, membrane permease 489855..491204 Chlamydophila abortus S26/3 3337420 YP_219840.1 CDS CAB426 NC_004552.2 491201 492184 D Similar to Bacillus subtilis manganese transport system membrane protein MntC SWALL:MNTC_BACSU (SWALL:O35024) (435 aa) fasta scores: E(): 4.1e-14, 25% id in 268 aa and Fusobacterium nucleatum high-affinity zinc uptake system membrane protein ZnuB fn0670 SWALL:Q8RFM2 (EMBL:AE010578) (305 aa) fasta scores: E(): 5.4e-11, 25.17% id in 290 aa; ABC transporter, membrane permease 491201..492184 Chlamydophila abortus S26/3 3337739 YP_219841.1 CDS dxr NC_004552.2 492224 493363 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 492224..493363 Chlamydophila abortus S26/3 3337656 YP_219842.1 CDS CAB428 NC_004552.2 493376 495244 D Similar to many predicted metalloproteases including: Borrelia burgdorferi hypothetical zinc metalloprotease Bb0118 SWALL:Y118_BORBU (SWALL:O51145) (437 aa) fasta scores: E(): 1e-13, 27.95% id in 322 aa and Chlamydia trachomatis hypothetical zinc metalloprotease Ct072 SWALL:Y072_CHLTR (SWALL:O84075) (619 aa) fasta scores: E(): 4.2e-150, 59.51% id in 620 aa; metalloprotease 493376..495244 Chlamydophila abortus S26/3 3337741 YP_219843.1 CDS CAB429 NC_004552.2 495195 496181 R Similar to Chlamydia pneumoniae Omp cpj0342 or cp0417 SWALL:Q9RB74 (EMBL:AE002203) (325 aa) fasta scores: E(): 3.3e-100, 75.84% id in 327 aa; hypothetical protein complement(495195..496181) Chlamydophila abortus S26/3 3337742 YP_219844.1 CDS recF NC_004552.2 496287 497390 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(496287..497390) Chlamydophila abortus S26/3 3338079 YP_219845.1 CDS dnaN NC_004552.2 497390 498490 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(497390..498490) Chlamydophila abortus S26/3 3337649 YP_219846.1 CDS smpB NC_004552.2 498730 499182 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 498730..499182 Chlamydophila abortus S26/3 3338207 YP_219847.1 CDS apbE NC_004552.2 499163 500107 R Similar to Haemophilus influenzae thiamine biosynthesis lipoprotein ApbE precursor hi0172 SWALL:APBE_HAEIN (SWALL:P44550) (346 aa) fasta scores: E(): 3.4e-23, 29.44% id in 326 aa, and to Vibrio cholerae thiamin biosynthesis lipoprotein ApbE vc2289 SWALL:Q9KPS3 (EMBL:AE004300) (367 aa) fasta scores: E(): 1.1e-22, 29.29% id in 314 aa; thiamine biosynthesis lipoprotein complement(499163..500107) Chlamydophila abortus S26/3 3337255 YP_219848.1 CDS CAB434 NC_004552.2 500077 500940 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(500077..500940) Chlamydophila abortus S26/3 3337743 YP_219849.1 CDS CAB435 NC_004552.2 500931 501446 R Similar to Chlamydia muridarum hypothetical protein Tc0351 SWALL:Q9PKW0 (EMBL:AE002303) (157 aa) fasta scores: E(): 6.2e-21, 42.85% id in 147 aa; hypothetical protein complement(500931..501446) Chlamydophila abortus S26/3 3337744 YP_219850.1 CDS CAB436 NC_004552.2 501657 501947 D Similar to Chlamydia trachomatis CDS idenitfied in the intracellular developmental cycle as a late transcription unit B protein LtuB or ct080 SWALL:LTUB_CHLTR (SWALL:Q46404) (97 aa) fasta scores: E(): 1.1e-10, 51.02% id in 98 aa; late transcription unit B protein 501657..501947 Chlamydophila abortus S26/3 3337745 YP_219851.1 CDS CAB437 NC_004552.2 502309 504048 D Similar to several Chlamydia proteins of undefined function including: Chlamydia trachomatis hypothetical protein Ct082 SWALL:O84084 (EMBL:AE001282) (560 aa) fasta scores: E(): 8.1e-45, 44.8% id in 587 aa. Note the high numbers of Serine residues in the C-terminus of the predicted product of this CDS. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 502309..504048 Chlamydophila abortus S26/3 3337746 YP_219852.1 CDS CAB438 NC_004552.2 504050 504511 D Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct083 hypothetical protein cpn0330 or cpj0330 or cp0427 SWALL:Q9Z8K8 (EMBL:AE001617) (158 aa) fasta scores: E(): 5.8e-29, 58.86% id in 158 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 504050..504511 Chlamydophila abortus S26/3 3337747 YP_219853.1 CDS CAB439 NC_004552.2 504508 505566 R Similar to Chlamydophila caviae hypothetical protein cca00453 SWALL:O34024 (EMBL:U88070) (351 aa) fasta scores: E(): 8.1e-103, 72.72% id in 352 aa; hypothetical protein complement(504508..505566) Chlamydophila abortus S26/3 3337748 YP_219854.1 CDS CAB440 NC_004552.2 505672 507417 R Similar to Thermoplasma volcanium hypothetical protein tv0410 or tvg0397730 SWALL:Q97BP5 (EMBL:AP000992) (481 aa) fasta scores: E(): 2.5e-58, 36.12% id in 454 aa, and to Bacillus halodurans hypothetical protein Bh3930 bh3930 SWALL:Q9K605 (EMBL:AP001520) (610 aa) fasta scores: E(): 5.2e-52, 36.85% id in 559 aa; hypothetical protein complement(505672..507417) Chlamydophila abortus S26/3 3337421 YP_219855.1 CDS rpmB NC_004552.2 507443 507712 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(507443..507712) Chlamydophila abortus S26/3 3338093 YP_219856.1 CDS malQ NC_004552.2 507885 509477 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(507885..509477) Chlamydophila abortus S26/3 3337458 YP_219857.1 CDS scc NC_004552.2 509515 509955 R Similar to Chlamydophila caviae Scc1 protein or SycE or cca00457 SWALL:O34021 (EMBL:U88070) (146 aa) fasta scores: E(): 1.8e-53, 95.2% id in 146 aa; Type III secretion chaperone complement(509515..509955) Chlamydophila abortus S26/3 3338199 YP_219858.1 CDS CAB444 NC_004552.2 509971 511167 R Similar to Pseudomonas aeruginosa (Pseudomonas outer membrane protein) PopN or pa1698 SWALL:O30531 (EMBL:AF010150) (288 aa) fasta scores: E(): 0.26, 23.82% id in 256 aa, and to Chlamydophila caviae CopN protein copn or cca00458 SWALL:O34020 (EMBL:U88070) (397 aa) fasta scores: E(): 2.3e-120, 86.68% id in 398 aa; hypothetical protein complement(509971..511167) Chlamydophila abortus S26/3 3337422 YP_219859.1 CDS CAB445 NC_004552.2 511192 513321 R Similar to Yersinia enterocolitica low calcium response locus protein D LcrD SWALL:LCRD_YEREN (SWALL:P21210) (704 aa) fasta scores: E(): 7.2e-118, 46.23% id in 703 aa and to Yersinia pestis, and Yersinia pseudotuberculosis low calcium response locus protein D LcrD or ypcd1.34c or y5044 or y0047 SWALL:LCRD_YERPE (SWALL:P31487) (704 aa) fasta scores: E(): 2.8e-117, 46.23% id in 703 aa; membrane transport protein complement(511192..513321) Chlamydophila abortus S26/3 3337622 YP_219860.1 CDS CAB446 NC_004552.2 513321 514403 R Similar to Bacillus subtilis flagellar biosynthetic protein FlhB SWALL:FLHB_BACSU (SWALL:P35538) (360 aa) fasta scores: E(): 1.1e-30, 32.85% id in 350 aa, Chlamydophila caviae hypothetical protein SWALL:O34018 (EMBL:U88070) (360 aa) fasta scores: E(): 5.5e-126, 96.11% id in 360 aa and Yersinia pestis, and Yersinia pseudotuberculosis yop proteins translocation protein U YscU or ypcd1.47 or y5031 or y0034 SWALL:YSCU_YERPE (SWALL:P40300) (354 aa) fasta scores: E(): 3e-32, 32.76% id in 354 aa; type III secretion system protein complement(513321..514403) Chlamydophila abortus S26/3 3337749 YP_219861.1 CDS CAB447 NC_004552.2 514765 515859 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 514765..515859 Chlamydophila abortus S26/3 3337750 YP_219862.1 CDS ribF NC_004552.2 515837 516751 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(515837..516751) Chlamydophila abortus S26/3 3338086 YP_219863.1 CDS truB NC_004552.2 516735 517442 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(516735..517442) Chlamydophila abortus S26/3 3338233 YP_219864.1 CDS rbfA NC_004552.2 517483 517845 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(517483..517845) Chlamydophila abortus S26/3 3337738 YP_219865.1 CDS infB NC_004552.2 517852 520476 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(517852..520476) Chlamydophila abortus S26/3 3338003 YP_219866.1 CDS nusA NC_004552.2 520466 521770 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(520466..521770) Chlamydophila abortus S26/3 3337472 YP_219867.1 CDS rpsA NC_004552.2 521861 523606 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(521861..523606) Chlamydophila abortus S26/3 3338104 YP_219868.1 CDS trxB NC_004552.2 523775 524710 D Similar to Prokaryotic and Eukaryotic thioredoxins including: Mycobacterium smegmatis thioredoxin reductase TrxB SWALL:TRXB_MYCSM (SWALL:O30973) (311 aa) fasta scores: E(): 2.4e-54, 50.64% id in 310 aa, and to Arabidopsis thaliana thioredoxin reductase 2 Ntr2 or at2g17420 or f5j6.18 SWALL:TRB2_ARATH (SWALL:Q39242) (383 aa) fasta scores: E(): 4.5e-69, 57.82% id in 313 aa; thioredoxin reductase 523775..524710 Chlamydophila abortus S26/3 3338235 YP_219869.1 CDS acpS NC_004552.2 524702 525070 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(524702..525070) Chlamydophila abortus S26/3 3337979 YP_219870.1 CDS CAB456 NC_004552.2 525086 525532 R Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct101 hypothetical protein cpn0312 or cpj0312 or cp0446 SWALL:Q9Z8M6 (EMBL:AE001616) (151 aa) fasta scores: E(): 5.1e-26, 48.29% id in 147 aa; hypothetical protein complement(525086..525532) Chlamydophila abortus S26/3 3337566 YP_219871.1 CDS lgt NC_004552.2 525603 526493 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 525603..526493 Chlamydophila abortus S26/3 3337449 YP_219872.1 CDS CAB458 NC_004552.2 526589 528973 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 526589..528973 Chlamydophila abortus S26/3 3337567 YP_219873.1 CDS dnaA NC_004552.2 529040 530422 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 529040..530422 Chlamydophila abortus S26/3 3337643 YP_219874.1 CDS CAB460 NC_004552.2 530424 530780 R Similar to Chlamydophila caviae hypothetical protein cca00474 SWALL:Q823E5 (EMBL:AE016995) (131 aa) fasta scores: E(): 2.4e-19, 52.89% id in 121 aa; lipoprotein complement(530424..530780) Chlamydophila abortus S26/3 3337568 YP_219875.1 CDS glgP NC_004552.2 530995 533493 D Similar to Prokaryotic and Eukaryotic glycogen phosphorylase including: Escherichia coli, and Shigella flexneri glycogen phosphorylase GlgP or GlgY SWALL:PHSG_ECOLI (SWALL:P13031) (815 aa) fasta scores: E(): 1e-155, 47.46% id in 809 aa and Homo sapiens glycogen phosphorylase, brain form PygB SWALL:PHS3_HUMAN (SWALL:P11216) (843 aa) fasta scores: E(): 3.2e-175, 53.62% id in 813 aa; glycogen phosphorylase 530995..533493 Chlamydophila abortus S26/3 3338058 YP_219876.1 CDS pdhC NC_004552.2 533565 534854 R Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(533565..534854) Chlamydophila abortus S26/3 3337659 YP_219877.1 CDS pdhB NC_004552.2 534859 535845 R Similar to the C-terminal beta domains of: Rhizobium meliloti pyruvate dehydrogenase E1 component, beta subunit PdhB SWALL:ODPB_RHIME (SWALL:Q9R9N4) (460 aa) fasta scores: E(): 2.1e-63, 50% id in 326 aa and to Brucella melitensis pyruvate dehydrogenase E1 component, beta subunit bmei0855 SWALL:Q8YHE6 (EMBL:AE009526) (461 aa) fasta scores: E(): 3.8e-64, 50.3% id in 326 aa; pyruvate dehydrogenase E1 component, beta subunit complement(534859..535845) Chlamydophila abortus S26/3 3337982 YP_219878.1 CDS pdhA NC_004552.2 535838 536863 R Similar to the N-terminal alpha subunits of: Rhizobium meliloti pyruvate dehydrogenase E1 component, alpha subunit PdhA SWALL:ODPA_RHIME (SWALL:Q9R9N5) (348 aa) fasta scores: E(): 9e-38, 40.13% id in 304 aa and Rickettsia sibirica pyruvate dehydrogenase E1 component alpha subunit SWALL:EAA25604 (EMBL:AABW01000001) (326 aa) fasta scores: E(): 1.3e-39, 39.81% id in 319 aa; pyruvate dehydrogenase e1 component, alpha subunit complement(535838..536863) Chlamydophila abortus S26/3 3337753 YP_219879.1 CDS CAB465 NC_004552.2 537028 538059 D Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct244 hypothetical protein cpn0303 or cpj0303 SWALL:Q9Z8N5 (EMBL:AE001615) (346 aa) fasta scores: E(): 1.1e-72, 53.6% id in 347 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 537028..538059 Chlamydophila abortus S26/3 3337569 YP_219880.1 CDS lpxD NC_004552.2 538065 539144 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(538065..539144) Chlamydophila abortus S26/3 3337456 YP_219881.1 CDS CAB467 NC_004552.2 539172 539711 R Similar to Chlamydia trachomatis OmpH-like protein precursor ct242 SWALL:OMPH_CHLTR (SWALL:Q9ZN58) (173 aa) fasta scores: E(): 8.5e-29, 60.33% id in 179 aa; hypothetical protein complement(539172..539711) Chlamydophila abortus S26/3 3337570 YP_219882.1 CDS CAB468 NC_004552.2 539818 542190 R Similar to Haemophilus influenzae protective surface antigen d15 precursor SWALL:D153_HAEIN (SWALL:O32629) (793 aa) fasta scores: E(): 5.6e-13, 23.23% id in 835 aa and to Xylella fastidiosa outer membrane antigen xf1046 SWALL:Q9PEI2 (EMBL:AE003941) (784 aa) fasta scores: E(): 5.8e-26, 23.37% id in 830 aa; hypothetical protein complement(539818..542190) Chlamydophila abortus S26/3 3337591 YP_219883.1 CDS recR NC_004552.2 542362 542964 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(542362..542964) Chlamydophila abortus S26/3 3338081 YP_219884.1 CDS fabH NC_004552.2 543078 544091 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 543078..544091 Chlamydophila abortus S26/3 3338041 YP_219885.1 CDS fabD NC_004552.2 544092 545018 D Similar to Escherichia coli, and Escherichia coli O6 malonyl CoA-acyl carrier protein transacylase FabD or TfpA or b1092 or c1361 SWALL:FABD_ECOLI (SWALL:P25715) (308 aa) fasta scores: E(): 2.3e-32, 39.16% id in 286 aa, and to Bacillus subtilis malonyl CoA-acyl carrier protein transacylase fabD SWALL:FABD_BACSU (SWALL:P71019) (317 aa) fasta scores: E(): 2.8e-38, 42.23% id in 296 aa; ACP S-malonyltransferase 544092..545018 Chlamydophila abortus S26/3 3338038 YP_219886.1 CDS fabG NC_004552.2 545023 545769 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 545023..545769 Chlamydophila abortus S26/3 3338040 YP_219887.1 CDS acpP NC_004552.2 545881 546117 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 545881..546117 Chlamydophila abortus S26/3 3337972 YP_219888.1 CDS CAB474 NC_004552.2 546253 546675 R Similar to several proposed regulatory proteins including: Anabaena sp. transcriptional regulator all1035 SWALL:Q8YY17 (EMBL:AP003584) (146 aa) fasta scores: E(): 2.1e-07, 27.82% id in 133 aa, and to Mycobacterium leprae Crp/Fnr-family transcriptional regulator ml2302 SWALL:Q9CB91 (EMBL:AL583925) (224 aa) fasta scores: E(): 9.9e-07, 29.68% id in 128 aa; Crp/Fnr family transcriptional regulator complement(546253..546675) Chlamydophila abortus S26/3 3337592 YP_219889.1 CDS CAB475 NC_004552.2 546687 549464 R Similar to several Chlamydia proteins of undefined function including: Chlamydophila caviae hypothetical protein cca00489 SWALL:Q823D3 (EMBL:AE016995) (925 aa) fasta scores: E(): 0, 88.43% id in 925 aa; lipoprotein complement(546687..549464) Chlamydophila abortus S26/3 3337571 YP_219890.1 CDS incC NC_004552.2 549568 550122 R Similar to Chlamydophila caviae inclusion membrane protein C IncC or cca00490 SWALL:O30783 (EMBL:AF017105) (186 aa) fasta scores: E(): 3.5e-45, 71.95% id in 189 aa; inclusion membrane protein C complement(549568..550122) Chlamydophila abortus S26/3 3338002 YP_219891.1 CDS incB NC_004552.2 550159 550767 R Similar to Chlamydophila caviae inclusion membrane protein B IncB or cca00491 SWALL:O30782 (EMBL:AF017105) (198 aa) fasta scores: E(): 1.7e-37, 54.95% id in 202 aa; inclusion membrane protein B complement(550159..550767) Chlamydophila abortus S26/3 3338001 YP_219892.1 CDS CAB478 NC_004552.2 550853 552334 R Similar to Chlamydophila caviae sodium-dependent transporter NadT SWALL:O30781 (EMBL:AF017105) (386 aa) fasta scores: E(): 2.7e-125, 88.58% id in 368 aa and to Bacillus cereus sodium-dependent leucine transporter bc2170 SWALL:Q81E25 (EMBL:AE017005) (446 aa) fasta scores: E(): 1.8e-32, 30.68% id in 453 aa, and to Bacillus anthracis sodium-dependent transporter, ba2216 SWALL:Q81R42 (EMBL:AE017031) (446 aa) fasta scores: E(): 3.2e-32, 30.46% id in 453 aa; sodium symporter family membrane transport protein complement(550853..552334) Chlamydophila abortus S26/3 3337572 YP_219893.1 CDS CAB479 NC_004552.2 552340 553560 R Similar to Streptomyces coelicolor proton transport protein Sco4498 or scd35.05 SWALL:Q9L0U6 (EMBL:AL939120) (440 aa) fasta scores: E(): 1.6e-23, 29.47% id in 380 aa and to Vibrio vulnificus Na+/H+-dicarboxylate symporter vv21383 SWALL:Q8D4C3 (EMBL:AE016813) (434 aa) fasta scores: E(): 4.4e-23, 27.58% id in 406 aa; sodium symporter family membrane transport protein complement(552340..553560) Chlamydophila abortus S26/3 3337573 YP_219894.1 CDS CAB481 NC_004552.2 553665 554843 D Similar to several Chlamydia proteins of undefined function including: Chlamydophila caviae hypothetical protein cca00494 SWALL:Q823D1 (EMBL:AE016995) (388 aa) fasta scores: E(): 2.7e-128, 77.14% id in 385 aa; hypothetical protein 553665..554843 Chlamydophila abortus S26/3 3337574 YP_219895.1 CDS CAB482 NC_004552.2 555105 557237 D Similar to several Chlamydia proteins of undefined function including:Chlamydophila caviae hypothetical protein cca00495 SWALL:Q823D0 (EMBL:AE016995) (710 aa) fasta scores: E(): 0, 82.53% id in 710 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 555105..557237 Chlamydophila abortus S26/3 3337575 YP_219896.1 CDS CAB483 NC_004552.2 557264 558676 D Similar to many membrane transport proteins including: Bacillus halodurans magnesium transporter bh3224 SWALL:Q9K7Y3 (EMBL:AP001518) (454 aa) fasta scores: E(): 3e-33, 28.47% id in 460 aa, and to Chlamydophila caviae magnesium transporter MgtE or cca00496 SWALL:Q823C9 (EMBL:AE016995) (470 aa) fasta scores: E(): 8e-171, 98.5% id in 469 aa; magnesium transporter 557264..558676 Chlamydophila abortus S26/3 3337576 YP_219897.1 CDS CAB484 NC_004552.2 558816 560231 D Similar in parts to Chlamydia pneumoniae hypothetical protein cpn0285 or cpj0285 or cp0473 SWALL:Q9Z8Q3 (EMBL:AE001613) (515 aa) fasta scores: E(): 7.8e-45, 30.97% id in 481 aa; hypothetical protein 558816..560231 Chlamydophila abortus S26/3 3337577 YP_219898.1 CDS CAB485 NC_004552.2 560338 561738 R Similar to many amino acid transport proteins including: Lactococcus lactis glutamate/gamma-aminobutyrate antiporter GadC SWALL:GADC_LACLC (SWALL:O30417) (503 aa) fasta scores: E(): 5.5e-46, 30.67% id in 463 aa and Brucella melitensis glutamate/gamma-aminobutyrate antiporter bmeii0909 SWALL:Q8YBJ1 (EMBL:AE009724) (510 aa) fasta scores: E(): 1.2e-54, 34.34% id in 460 aa; amino acid permease complement(560338..561738) Chlamydophila abortus S26/3 3337578 YP_219899.1 CDS fbaB NC_004552.2 561755 562804 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase complement(561755..562804) Chlamydophila abortus S26/3 3338043 YP_219900.1 CDS CAB487 NC_004552.2 562974 564920 D Weakly similar in parts to Chlamydia trachomatis hypothetical protein Ct214 SWALL:O84216 (EMBL:AE001295) (547 aa) fasta scores: E(): 0.017, 25.45% id in 444 aa; hypothetical protein 562974..564920 Chlamydophila abortus S26/3 3337579 YP_219901.1 CDS CAB488 NC_004552.2 565063 566088 D Similar to several membrane transporters including: Bacillus halodurans ABC transporter bh3481 SWALL:Q9K789 (EMBL:AP001518) (338 aa) fasta scores: E(): 2e-33, 36.57% id in 309 aa and Xanthomonas axonopodis ABC transporter ATP-binding protein xac3669 SWALL:AAM38512 (EMBL:AE012017) (335 aa) fasta scores: E(): 3.8e-33, 35.11% id in 319 aa; ABC transporter, ATP-binding component 565063..566088 Chlamydophila abortus S26/3 3337580 YP_219902.1 CDS CAB489 NC_004552.2 566102 566767 D Similar to several membrane transporters including: Yersinia pestis ABC transport integral membrane subunit Ypo1319 or y2865 SWALL:Q8ZGH8 (EMBL:AJ414147) (223 aa) fasta scores: E(): 2.9e-25, 37.2% id in 215 aa and Ralstonia solanacearum probable transmembrane ABC transporter protein Rsc0921 or Rs04492 SWALL:Q8Y0X2 (EMBL:AL646061) (217 aa) fasta scores: E(): 2.1e-22, 34.86% id in 218 aa; ABC transport integral membrane subunit 566102..566767 Chlamydophila abortus S26/3 3337581 YP_219903.1 CDS CAB490 NC_004552.2 566764 567567 D Similar to many including: Pasteurella haemolytica outer membrane lipoprotein 3 precursor PlpC SWALL:PLPC_PASHA (SWALL:Q08870) (263 aa) fasta scores: E(): 2.5e-15, 29.47% id in 268 aa and Streptomyces coelicolor lipoprotein sco1557 or scl11.13C SWALL:Q9L1C5 (EMBL:AL939109) (275 aa) fasta scores: E(): 7.3e-25, 35.95% id in 267 aa; lipoprotein 566764..567567 Chlamydophila abortus S26/3 3337582 YP_219904.1 CDS CAB491 NC_004552.2 567663 568217 D Similar to Chlamydia pneumoniae hypothetical protein cpn0277 or cpj0277 or cp0481 or cpb0285 SWALL:Q9Z8R1 (EMBL:AE001613) (169 aa) fasta scores: E(): 0.41, 25.19% id in 131 aa; hypothetical protein 567663..568217 Chlamydophila abortus S26/3 3337583 YP_219905.1 CDS CAB492 NC_004552.2 568471 568821 D Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct191 hypothetical protein cpn0276 or cpj0276 or cp0483 SWALL:Q9Z8R2 (EMBL:AE001612) (115 aa) fasta scores: E(): 5.2e-22, 56.89% id in 116 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 568471..568821 Chlamydophila abortus S26/3 3337584 YP_219906.1 CDS gyrB NC_004552.2 568825 571245 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 568825..571245 Chlamydophila abortus S26/3 3337991 YP_219907.1 CDS gyrA NC_004552.2 571261 573753 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 571261..573753 Chlamydophila abortus S26/3 3337990 YP_219908.1 CDS tmk NC_004552.2 573766 574401 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 573766..574401 Chlamydophila abortus S26/3 3337585 YP_219909.1 CDS CAB496 NC_004552.2 574467 575267 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 574467..575267 Chlamydophila abortus S26/3 3337586 YP_219910.1 CDS CAB497 NC_004552.2 575244 575966 R Weakly similar to Homo sapiens lysophospholipase II Dj570f3.6 dj570f3.6 SWALL:Q9UGE0 (EMBL:AL050332) (231 aa) fasta scores: E(): 0.041, 26.96% id in 204 aa; hydrolase complement(575244..575966) Chlamydophila abortus S26/3 3337587 YP_219911.1 CDS CAB498 NC_004552.2 576242 577129 D Weakly similar to many e.g. Clostridium perfringens hypothetical protein Cpe2200 SWALL:Q8XIC1 (EMBL:AP003193) (350 aa) fasta scores: E(): 1.6e-13, 32.35% id in 204 aa; hypothetical protein 576242..577129 Chlamydophila abortus S26/3 3337588 YP_219912.1 CDS CAB499 NC_004552.2 577126 578109 D Similar to Brevibacillus borstelensis thermostable dipeptidase Bdp SWALL:Q9KH70 (EMBL:AF268476) (307 aa) fasta scores: E(): 6.3e-11, 26.8% id in 332 aa; hypothetical protein 577126..578109 Chlamydophila abortus S26/3 3337589 YP_219913.1 CDS CAB500 NC_004552.2 578173 579273 R Similar to Chlamydophila caviae hypothetical protein cca00513 SWALL:Q823B2 (EMBL:AE016995) (373 aa) fasta scores: E(): 1e-39, 51.05% id in 380 aa; hypothetical protein complement(578173..579273) Chlamydophila abortus S26/3 3337590 YP_219914.1 CDS CAB501 NC_004552.2 579453 580553 R Similar to Chlamydophila caviae hypothetical protein cca00514 SWALL:Q823B1 (EMBL:AE016995) (379 aa) fasta scores: E(): 1.4e-70, 58.31% id in 379 aa and to Chlamydia pneumoniae hypothetical protein cpb0274 SWALL:Q7VQ56 (EMBL:AE017157) (260 aa) fasta scores: E(): 4.6e-11, 28.27% id in 237 aa; hypothetical protein complement(579453..580553) Chlamydophila abortus S26/3 3337793 YP_219915.1 CDS CAB502 NC_004552.2 580752 581432 R Weakly similar to Streptomyces coelicolor hypothetical protein Sco5140 or scp8.03 SWALL:Q9FBL8 (EMBL:AL939122) (252 aa) fasta scores: E(): 1.8e-11, 33.82% id in 204 aa; hypothetical protein complement(580752..581432) Chlamydophila abortus S26/3 3337794 YP_219916.1 CDS ubiA NC_004552.2 581625 582524 D UbiA prenyltransferase catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 581625..582524 Chlamydophila abortus S26/3 3337795 YP_219917.1 CDS CAB504 NC_004552.2 582538 583116 D Weakly similar to the C-terminus of Saccharomyces cerevisiae phenylacrylic acid decarboxylase pad1 or pof1 or ydr538W SWALL:PAD1_YEAST (SWALL:P33751) (242 aa) fasta scores: E(): 5.8e-24, 38.09% id in 189 aa. Also similar to several others for which function has to be fully defined e.g. Bacillus firmus probable aromatic acid decarboxylase SWALL:PAAD_BACFI (SWALL:P94300) (200 aa) fasta scores: E(): 2.3e-27, 44.89% id in 196 aa; aromatic acid decarboxylase 582538..583116 Chlamydophila abortus S26/3 3337796 YP_219918.1 CDS CAB505 NC_004552.2 583113 584006 R Similar to many proteins of undefined function including: Bacillus cereus hypothetical membrane spanning protein Bc4280 SWALL:Q812T4 (EMBL:AE017011) (292 aa) fasta scores: E(): 7.2e-35, 39.56% id in 278 aa and Listeria monocytogenes, Listeria innocua hypothetical protein Lmo1385 or lin1422 SWALL:Q92BX0 (EMBL:AL591978) (308 aa) fasta scores: E(): 5.7e-28, 37.24% id in 290 aa; lipoprotein complement(583113..584006) Chlamydophila abortus S26/3 3337797 YP_219919.1 CDS surE NC_004552.2 584563 585399 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(584563..585399) Chlamydophila abortus S26/3 3337798 YP_219920.1 CDS CAB507 NC_004552.2 585446 586210 R Similar to Rhizobium loti hypothetical protein Mlr0047 SWALL:Q98NP4 (EMBL:AP002994) (271 aa) fasta scores: E(): 4.8e-17, 35.15% id in 219 aa and to Xylella fastidiosa hypothetical protein Xf0569 xf0569 SWALL:Q9PFT8 (EMBL:AE003903) (312 aa) fasta scores: E(): 8.4e-17, 34.34% id in 230 aa; hypothetical protein complement(585446..586210) Chlamydophila abortus S26/3 3337799 YP_219921.1 CDS CAB508 NC_004552.2 586338 586811 D Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae protein translocase subunit seca_1 or cpn0260 SWALL:Q9Z8S8 (EMBL:AE001611) (166 aa) fasta scores: E(): 1.4e-30, 56.62% id in 166 aa; hypothetical protein 586338..586811 Chlamydophila abortus S26/3 3337800 YP_219922.1 CDS CAB509 NC_004552.2 587186 588019 D Similar to several Chlamydia proteins of undefined function including:Chlamydia muridarum hypothetical protein Tc0419 tc0419 SWALL:Q9PKP6 (EMBL:AE002308) (280 aa) fasta scores: E(): 2.3e-36, 41.25% id in 286 aa; hypothetical protein 587186..588019 Chlamydophila abortus S26/3 3337801 YP_219923.1 CDS CAB510 NC_004552.2 588022 588867 D Similar to several Chlamydia proteins of undefined function including: Chlamydia trachomatis hypothetical protein Ct143 SWALL:O84145 (EMBL:AE001287) (280 aa) fasta scores: E(): 1.9e-39, 45.07% id in 264 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 588022..588867 Chlamydophila abortus S26/3 3337802 YP_219924.1 CDS CAB511 NC_004552.2 588871 589692 D Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct144 hypothetical protein_3 cpn0256 or cpj0256 or cp0505 SWALL:Q9Z8T0 (EMBL:AE001611) (289 aa) fasta scores: E(): 2e-38, 38.88% id in 288 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 588871..589692 Chlamydophila abortus S26/3 3337803 YP_219925.1 CDS CAB512 NC_004552.2 589717 591099 R Similar to Clostridium acetobutylicum predicted Fe-S oxidoreductase Cac1813 SWALL:Q97I40 (EMBL:AE007690) (445 aa) fasta scores: E(): 3.8e-58, 38.03% id in 447 aa and Salmonella typhi hypothetical protein YliG or sty0891 or t2037 SWALL:Q8Z861 (EMBL:AL627268) (441 aa) fasta scores: E(): 2.7e-50, 38.24% id in 455 aa. Note the differing N-termini when compared to other Chlamyidaceae orthologues.; hypothetical protein complement(589717..591099) Chlamydophila abortus S26/3 3337804 YP_219926.1 CDS rpmG NC_004552.2 591198 591356 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 591198..591356 Chlamydophila abortus S26/3 3338097 YP_219927.1 CDS lolC NC_004552.2 591406 592917 D Similar to several including: Chlamydia pneumoniae ct151 hypothetical protein Cpn0249 SWALL:Q9Z8T5 (EMBL:AE001610) (503 aa) fasta scores: E(): 8.1e-129, 65.4% id in 503 aa and Haemophilus influenzae lipoprotein releasing system transmembrane protein LolC or hi1548 SWALL:LOLE_HAEIN (SWALL:P44250) (416 aa) fasta scores: E(): 4.8e-08, 24.1% id in 336 aa; lipoprotein releasing system transmembrane protein 591406..592917 Chlamydophila abortus S26/3 3337452 YP_219928.1 CDS lolD NC_004552.2 592920 593591 D Similar to Escherichia coli lipoprotein releasing system ATP-binding protein LolD or b1117 SWALL:LOLD_ECOLI (SWALL:P75957) (233 aa) fasta scores: E(): 2e-29, 46.63% id in 223 aa, and to Haemophilus influenzae lipoprotein releasing system ATP-binding protein LolD or hi1549 SWALL:LOLD_HAEIN (SWALL:P45247) (227 aa) fasta scores: E(): 1.8e-30, 46.18% id in 223 aa; lipoprotein releasing system ATP-binding protein 592920..593591 Chlamydophila abortus S26/3 3337453 YP_219929.1 CDS rplM NC_004552.2 595365 595817 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 595365..595817 Chlamydophila abortus S26/3 3337485 YP_219930.1 CDS rpsI NC_004552.2 595831 596232 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 595831..596232 Chlamydophila abortus S26/3 3338111 YP_219931.1 CDS CAB520 NC_004552.2 596358 597209 R Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae polysaccharide hydrolase-invasin repeat family protein YdhO or cpn0245 or cp0517 SWALL:Q9Z8T9 (EMBL:AE001610) (285 aa) fasta scores: E(): 2.1e-48, 44.94% id in 287 aa; hypothetical protein complement(596358..597209) Chlamydophila abortus S26/3 3337806 YP_219932.1 CDS adk NC_004552.2 597264 597905 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(597264..597905) Chlamydophila abortus S26/3 3337254 YP_219933.1 CDS CAB522 NC_004552.2 598187 599320 D Similar to Chlamydophila caviae hypothetical protein cca00536 SWALL:Q822Z0 (EMBL:AE016996) (374 aa) fasta scores: E(): 6.9e-58, 48.79% id in 373 aa and to Chlamydia pneumoniae hypothetical protein Cpj0241 cpj0241 SWALL:Q9JSH3 (EMBL:AP002545) (384 aa) fasta scores: E(): 0.0044, 21.6% id in 250 aa; hypothetical protein 598187..599320 Chlamydophila abortus S26/3 3337807 YP_219934.1 CDS CAB523 NC_004552.2 599337 599750 D Similar to Chlamydophila caviae hypothetical protein cca00537 SWALL:Q822Y9 (EMBL:AE016996) (140 aa) fasta scores: E(): 3.5e-32, 57.14% id in 140 aa, and to Chlamydia pneumoniae hypothetical protein cpn0242 cpn0242 or cpj0242 or cp0520 or cpb0248 SWALL:Q9Z8U2 (EMBL:AE001610) (144 aa) fasta scores: E(): 0.033, 25.35% id in 142 aa; hypothetical protein 599337..599750 Chlamydophila abortus S26/3 3337808 YP_219935.1 CDS CAB524 NC_004552.2 599869 601005 D Similar to Chlamydophila caviae hypothetical protein cca00538 SWALL:Q822Y8 (EMBL:AE016996) (373 aa) fasta scores: E(): 4e-61, 48.94% id in 380 aa; hypothetical protein 599869..601005 Chlamydophila abortus S26/3 3337809 YP_219936.1 CDS pgl NC_004552.2 601041 601817 R catalyzes the formation of 6-phospho-D-gluconate from 6-phospho-D-glucono-1,5-lactone; 6-phosphogluconolactonase complement(601041..601817) Chlamydophila abortus S26/3 3337663 YP_219937.1 CDS zwf NC_004552.2 601841 603406 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(601841..603406) Chlamydophila abortus S26/3 3338245 YP_219938.1 CDS CAB527 NC_004552.2 603587 605173 R Similar to Bacillus subtilis oligopeptide-binding protein OppA or Spo0ka or Bsu11430 SWALL:OPPA_BACSU (SWALL:P24141) (545 aa) fasta scores: E(): 1.3e-42, 29.72% id in 508 aa and Chlamydia trachomatis oligopeptide binding protein Oppa_3 or ct198 SWALL:O84201 (EMBL:AE001293) (518 aa) fasta scores: E(): 2.6e-94, 51.58% id in 537 aa. Note the large overpal with CAB527 and the alternative possible translational start site at codon 19; membrane transport protein, solute-binding component complement(603587..605173) Chlamydophila abortus S26/3 3337810 YP_219939.1 CDS CAB528 NC_004552.2 605119 606153 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(605119..606153) Chlamydophila abortus S26/3 3337811 YP_219940.1 CDS CAB530 NC_004552.2 606725 607372 D Similar to many membrane transport proteins including: Pseudomonas aeruginosa probable permease of ABC transporter Pa0313 SWALL:Q9I6H8 (EMBL:AE004469) (230 aa) fasta scores: E(): 4.8e-25, 35.64% id in 202 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical amino-acid ABC transporter permease yecs yecs or b1918 or c2332 or sf1961 or s2057 SWALL:YECS_ECOLI (SWALL:P76315) (222 aa) fasta scores: E(): 6.3e-23, 36.94% id in 203 aa; ABC transporter, membrane permease 606725..607372 Chlamydophila abortus S26/3 3337812 YP_219941.1 CDS CAB531 NC_004552.2 607369 608049 D Similar to Corynebacterium glutamicum ABC-type transporter, ATPase component Cgl1222 SWALL:BAB98615 (EMBL:AP005277) (243 aa) fasta scores: E(): 4e-16, 37.31% id in 201 aa and Clostridium acetobutylicum amino acid ABC-type transporter, ATPase component Cac3327 SWALL:Q97DZ3 (EMBL:AE007829) (247 aa) fasta scores: E(): 4.6e-16, 38.63% id in 220 aa; ABC transporter, ATP-binding component 607369..608049 Chlamydophila abortus S26/3 3337813 YP_219942.1 CDS CAB532 NC_004552.2 608106 609452 R Similar to Chlamydia pneumoniae hypothetical protein cpn0190/cp0577/cpj0190 cpn0190 or cp0577 or cpj0190 SWALL:Y190_CHLPN (SWALL:Q9Z8Z4) (452 aa) fasta scores: E(): 4.6e-56, 39.01% id in 446 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(608106..609452) Chlamydophila abortus S26/3 3337814 YP_219943.1 CDS CAB533 NC_004552.2 609571 612990 R Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae hypothetical protein Cp0578 SWALL:Q9K243 (EMBL:AE002216) (1142 aa) fasta scores: E(): 0, 62.25% id in 1134 aa; hypothetical protein complement(609571..612990) Chlamydophila abortus S26/3 3337815 YP_219944.1 CDS CAB534 NC_004552.2 612987 614279 R Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct132 hypothetical protein Cpn0188 SWALL:Q9Z8Z6 (EMBL:AE001605) (430 aa) fasta scores: E(): 4.4e-118, 66.97% id in 430 aa. Note contains a protein motif similar to the Ribonuclease BN-like family of proteins.; hypothetical protein complement(612987..614279) Chlamydophila abortus S26/3 3337816 YP_219945.1 CDS CAB535 NC_004552.2 614359 615237 R Similar to several Chlamydia proteins of undefined function including: Chlamydophila caviae strain GpiC inclusion membrane localised protein Cca00549 SWALL:Q46211 (EMBL:L35036) (270 aa) fasta scores: E(): 3.9e-89, 77.86% id in 271 aa. Contains an N-terminal hydrophobic domain; hypothetical protein complement(614359..615237) Chlamydophila abortus S26/3 3337817 YP_219946.1 CDS incA NC_004552.2 615254 616396 R Similar to Chlamydophila caviae inclusion membrane localised protein IncA or cca00550 SWALL:Q46210 (EMBL:L35036) (355 aa) fasta scores: E(): 2e-48, 46.72% id in 351 aa; inclusion membrane protein complement(615254..616396) Chlamydophila abortus S26/3 3338000 YP_219947.1 CDS CAB537 NC_004552.2 616790 617485 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 616790..617485 Chlamydophila abortus S26/3 3337818 YP_219948.1 CDS CAB538 NC_004552.2 617472 618029 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 617472..618029 Chlamydophila abortus S26/3 3337819 YP_219949.2 CDS CAB539 NC_004552.2 618061 618561 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 618061..618561 Chlamydophila abortus S26/3 3337820 YP_219950.1 CDS accC NC_004552.2 618561 619916 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 618561..619916 Chlamydophila abortus S26/3 3337971 YP_219951.1 CDS CAB545 NC_004552.2 623263 624252 R Similar to Chlamydophila caviae hypothetical protein cca00557 SWALL:Q822X1 (EMBL:AE016996) (328 aa) fasta scores: E(): 8.9e-41, 44% id in 325 aa; hypothetical protein complement(623263..624252) Chlamydophila abortus S26/3 3337823 YP_219952.1 CDS CAB546 NC_004552.2 624804 625427 R Weakly similar in parts to Arabidopsis thaliana bzip transcription factor at2g13150 SWALL:Q9SL54 (EMBL:AC006194) (262 aa) fasta scores: E(): 4.6, 28.48% id in 172 aa; hypothetical protein complement(624804..625427) Chlamydophila abortus S26/3 3337824 YP_219953.1 CDS CAB547 NC_004552.2 625420 625704 R hypothetical protein complement(625420..625704) Chlamydophila abortus S26/3 3337825 YP_219954.1 CDS CAB548 NC_004552.2 625937 626617 R Similar to regions within the Chlamydia muridarum MAC/perforin family protein tc0431 SWALL:Q9PKN4 (EMBL:AE002310) (809 aa) fasta scores: E(): 2.7e-24, 46.07% id in 191 aa. Note the high number of Val residues; hypothetical protein complement(625937..626617) Chlamydophila abortus S26/3 3337711 YP_219955.1 CDS CAB549 NC_004552.2 626920 628488 R Very low sequence similarity in parts to Chlamydophila caviae hypothetical protein CCA00634 SWALL:Q822P5 (EMBL:AE016996) (416 aa) fasta scores: E(): 4.4e-08, 28.06% id in 253 aa, and to Chlamydia pneumoniae hypothetical protein CPN0355 SWALL:Q9Z8I8 (EMBL:AE001619) (433 aa) fasta scores: E(): 0.00062, 25.61% id in 246 aa; hypothetical protein complement(626920..628488) Chlamydophila abortus S26/3 3337712 YP_219956.1 CDS CAB550 NC_004552.2 628495 628794 R hypothetical protein complement(628495..628794) Chlamydophila abortus S26/3 3337713 YP_219957.1 CDS CAB553 NC_004552.2 630197 631030 R Similar to Chlamydophila caviae hypothetical protein CCA00575 SWALL:Q822V4 (EMBL:AE016996) (294 aa) fasta scores: E(): 8e-75, 63.17% id in 277 aa, and to Chlamydia pneumoniae hypothetical protein CPN0177 or CPJ0177 or CP0592 SWALL:Q9Z907 (EMBL:AE001604) (284 aa) fasta scores: E(): 1.3e-42, 44.07% id in 270 aa; lipoprotein complement(630197..631030) Chlamydophila abortus S26/3 3337714 YP_219958.1 CDS CAB554 NC_004552.2 631498 631965 D Similar to Chlamydophila caviae hypothetical protein CCA00576 SWALL:Q822V3 (EMBL:AE016996) (170 aa) fasta scores: E(): 1e-28, 63.75% id in 149 aa, and to Chlamydia pneumoniae hypothetical protein CPN0174 or CPJ0174 SWALL:Q9Z910 (EMBL:AE001604) (156 aa) fasta scores: E(): 4.2e-13, 39.04% id in 146 aa; hypothetical protein 631498..631965 Chlamydophila abortus S26/3 3337715 YP_219959.1 CDS CAB557 NC_004552.2 633304 633768 D Similar to Chlamydophila caviae hypothetical protein CCA00579 SWALL:Q822V0 (EMBL:AE016996) (148 aa) fasta scores: E(): 4e-11, 40.6% id in 133 aa, and to Chlamydia pneumoniae hypothetical protein CPJ0223 SWALL:Q9JSH5 (EMBL:AP002545) (126 aa) fasta scores: E(): 4.3e-08, 39.51% id in 124 aa; hypothetical protein 633304..633768 Chlamydophila abortus S26/3 3337717 YP_219960.1 CDS CAB558 NC_004552.2 634193 634864 D Similar to Staphylococcus aureus hypothetical protein SAV1432 or SA1265 or MW1321 SWALL:Q99U56 (EMBL:AP003362) (234 aa) fasta scores: E(): 9e-13, 28.38% id in 229 aa, and to Bacillus subtilis hypothetical protein YpdP or BSU21980 SWALL:YPDP_BACSU (SWALL:P54163) (229 aa) fasta scores: E(): 6.2e-10, 27.52% id in 218 aa; hypothetical protein 634193..634864 Chlamydophila abortus S26/3 3337718 YP_219961.1 CDS CAB559 NC_004552.2 635042 636160 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4, 5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7- deazaguanosine); queuine tRNA-ribosyltransferase 635042..636160 Chlamydophila abortus S26/3 3337719 YP_219962.1 CDS CAB560 NC_004552.2 636396 636842 D Similar to Chlamydophila caviae hypothetical protein CCA00582 SWALL:Q822U7 (EMBL:AE016996) (148 aa) fasta scores: E(): 7.1e-45, 72.97% id in 148 aa, and to Chlamydia pneumoniae hypothetical protein CPN0221 or CPJ0221 or CP0544 SWALL:Q9Z8W3 (EMBL:AE001608) (136 aa) fasta scores: E(): 3.1e-12, 39.09% id in 110 aa; hypothetical protein 636396..636842 Chlamydophila abortus S26/3 3337720 YP_219963.1 CDS CAB560A NC_004552.2 637249 637713 D Similar to Chlamydophila caviae hypothetical protein CCA00583 SWALL:Q822U6 (EMBL:AE016996) (155 aa) fasta scores: E(): 1.7e-36, 59.74% id in 154 aa, and to Chlamydophila pneumoniae TW-183 hypothetical protein CPB0228 SWALL:AAP98161 (EMBL:AE017157) (126 aa) fasta scores: E(): 8.2e-12, 39.85% id in 133 aa; hypothetical protein 637249..637713 Chlamydophila abortus S26/3 3337721 YP_219964.1 CDS CAB562 NC_004552.2 638785 639195 R Similar to Bacillus subtilis disulfide bond formation protein C BdbC or Bsu33470 SWALL:BDBC_BACSU (SWALL:O32217) (138 aa) fasta scores: E(): 3.1e-14, 40.79% id in 125 aa and to Coxiella burnetii probable disulfide formation protein Cbu0888 SWALL:BDBC_COXBU (SWALL:Q83D55) (147 aa) fasta scores: E(): 1.3e-20, 48.12% id in 133 aa; disulfide oxidoreductase complement(638785..639195) Chlamydophila abortus S26/3 3337723 YP_219965.1 CDS CAB563 NC_004552.2 639188 639886 R Similar to Coxiella burnetii hypothetical protein Cbu0889 SWALL:Q83D54 (EMBL:AE016962) (218 aa) fasta scores: E(): 1.2e-10, 33.18% id in 220 aa and to Vibrio parahaemolyticus membrane protein Vpa0994 SWALL:Q87HH1 (EMBL:AP005087) (262 aa) fasta scores: E(): 8.1e-05, 25.98% id in 204 aa; hypothetical protein complement(639188..639886) Chlamydophila abortus S26/3 3337724 YP_219966.1 CDS CAB564 NC_004552.2 640014 641312 D Similar to several Chlamydia proteins of undefined function including: Chlamydophila caviae hypothetical protein Cca00590 SWALL:Q822T9 (EMBL:AE016996) (408 aa) fasta scores: E(): 3.2e-146, 84.31% id in 408 aa; hypothetical protein 640014..641312 Chlamydophila abortus S26/3 3337725 YP_219967.1 CDS CAB565 NC_004552.2 641326 642030 R Similar to Chlamydophila caviae hypothetical protein CCA00591 SWALL:Q822T8 (EMBL:AE016996) (235 aa) fasta scores: E(): 3.4e-53, 64.25% id in 235 aa, and to Chlamydia pneumoniae CT179 hypothetical protein CPN0230 or CPJ0230 SWALL:Q9Z8V4 (EMBL:AE001609) (226 aa) fasta scores: E(): 2.7e-26, 38.46% id in 221 aa; hypothetical protein complement(641326..642030) Chlamydophila abortus S26/3 3337726 YP_219968.1 CDS CAB566 NC_004552.2 642015 642722 R Similar to many including: Bacillus anthracis ABC transporter, ATP-binding protein Ba0383 SWALL:Q81Z89 (EMBL:AE017025) (249 aa) fasta scores: E(): 6.9e-21, 36.63% id in 202 aa, and to Streptomyces avermitilis ABC transporter ATP-binding protein sav1340 SWALL:Q82NG3 (EMBL:AP005026) (275 aa) fasta scores: E(): 2.3e-20, 36.98% id in 219 aa; ABC transporter, ATP-binding component complement(642015..642722) Chlamydophila abortus S26/3 3337423 YP_219969.1 CDS CAB568 NC_004552.2 644069 644761 R Similar to Chlamydophila caviae hypothetical protein Cca00595 SWALL:Q822T4 (EMBL:AE016996) (229 aa) fasta scores: E(): 1.1e-81, 89.56% id in 230 aa; hypothetical protein complement(644069..644761) Chlamydophila abortus S26/3 3337876 YP_219970.1 CDS CAB569 NC_004552.2 644927 645691 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 644927..645691 Chlamydophila abortus S26/3 3337877 YP_219971.1 CDS pyrG NC_004552.2 645667 647280 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 645667..647280 Chlamydophila abortus S26/3 3337638 YP_219972.1 CDS ruvX NC_004552.2 647273 647725 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 647273..647725 Chlamydophila abortus S26/3 3338198 YP_219973.1 CDS CAB572 NC_004552.2 647973 649313 D Similar to Bacillus subtilis oligopeptide-binding protein precursor OppA or spo0ka or bsu11430 SWALL:OPPA_BACSU (SWALL:P24141) (545 aa) fasta scores: E(): 1.3e-07, 26.23% id in 446 aa, and to Chlamydophila caviae peptide ABC transporter, periplasmic binding protein cca00599 SWALL:Q822T0 (EMBL:AE016996) (445 aa) fasta scores: E(): 9.6e-152, 81.16% id in 446 aa, and to Fusobacterium nucleatum subsp. vincentii ATCC 49256 dipeptide-binding protein fnv1219 SWALL:EAA24064 (EMBL:AABF01000057) (474 aa) fasta scores: E(): 2e-12, 26.73% id in 389 aa; ABC transporter peptide periplasmic binding lipoprotein 647973..649313 Chlamydophila abortus S26/3 3337878 YP_219974.1 CDS CAB573 NC_004552.2 649430 651037 D Similar to Bacillus subtilis dipeptide-binding protein DppE precursor or DcIAE or bsu12960 SWALL:DPPE_BACSU (SWALL:P26906) (543 aa) fasta scores: E(): 7.3e-37, 26.25% id in 518 aa, and to Chlamydophila caviae peptide ABC transporter, periplasmic binding protein, cca00600 SWALL:Q822S9 (EMBL:AE016996) (535 aa) fasta scores: E(): 5.1e-170, 79.77% id in 534 aa, and to Rhizobium meliloti oligopeptide ABC transporter OppA or rb0861 or smb21196 SWALL:Q9AKR0 (EMBL:AJ296269) (532 aa) fasta scores: E(): 6.2e-37, 28.98% id in 514 aa. Note this CDS is also similar to the downstream CDS CAB574 51 % identity (51.357% ungapped) in 523 aa overlap; ABC transporter peptide periplasmic-binding lipoprotein 649430..651037 Chlamydophila abortus S26/3 3337879 YP_219975.1 CDS CAB574 NC_004552.2 651242 652834 D Similar to Bacillus subtilis oligopeptide-binding protein OppA precursor or spo0ka or bsu11430 SWALL:OPPA_BACSU (SWALL:P24141) (545 aa) fasta scores: E(): 4.8e-37, 25.88% id in 537 aa, and to Chlamydophila caviae peptide ABC transporter, periplasmic binding protein OppA or cca00601 SWALL:Q822S8 (EMBL:AE016996) (545 aa) fasta scores: E(): 5.6e-170, 80.18% id in 530 aa, and to Thermoanaerobacter tengcongensis ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components OppA6 or tte0611 SWALL:Q8RC37 (EMBL:AE013030) (547 aa) fasta scores: E(): 3.6e-37, 28.99% id in 545 aa. Note this CDS is also similar to the upstream CDS CAB573 51 % identity (51.357% ungapped) in 523 aa overlap; peptide ABC transporter substrate-binding protein 651242..652834 Chlamydophila abortus S26/3 3337880 YP_219976.1 CDS CAB575 NC_004552.2 653061 654032 D Similar to Bacillus subtilis oligopeptide transport system permease OppB or Spo0kb or bsu11440 SWALL:OPPB_BACSU (SWALL:P24138) (311 aa) fasta scores: E(): 7.6e-49, 43.64% id in 307 aa, and to Chlamydophila caviae peptide ABC transporter, permease cca00602 SWALL:Q822S7 (EMBL:AE016996) (327 aa) fasta scores: E(): 3.9e-116, 94.42% id in 323 aa, and to Bacillus anthracis oligopeptide ABC transporter, permease ba0185 SWALL:Q81VL2 (EMBL:AE017024) (307 aa) fasta scores: E(): 1.5e-49, 43.93% id in 305 aa; peptide ABC transport system permease 653061..654032 Chlamydophila abortus S26/3 3337881 YP_219977.1 CDS CAB576 NC_004552.2 654092 654958 D Similar to Bacillus subtilis oligopeptide transport system permease OppC or spo0kc or bsu11450 SWALL:OPPC_BACSU (SWALL:P24139) (305 aa) fasta scores: E(): 2.8e-39, 39.03% id in 269 aa, and to Chlamydophila caviae peptide ABC transporter, permease OppC_1 or cca00603 SWALL:Q822S6 (EMBL:AE016996) (302 aa) fasta scores: E(): 1.1e-103, 93.7% id in 286 aa, and to Thermoanaerobacter tengcongensis ABC-type dipeptide/oligopeptide/nickel transport systems, permease components DppC4 or tte0613 SWALL:Q8RC35 (EMBL:AE013030) (305 aa) fasta scores: E(): 1.3e-40, 41.44% id in 263 aa; peptide ABC transport system permease 654092..654958 Chlamydophila abortus S26/3 3337882 YP_219978.1 CDS CAB577 NC_004552.2 654951 655817 D Similar to Bacillus thuringiensis oligopeptide transporter OppD SWALL:Q9F5U3 (EMBL:AF305387) (347 aa) fasta scores: E(): 6.3e-36, 41.53% id in 260 aa, and to Chlamydophila caviae peptide ABC transporter, ATP-binding protein OppD or cca00604 SWALL:Q822S5 (EMBL:AE016996) (288 aa) fasta scores: E(): 5e-93, 90.62% id in 288 aa, and to Staphylococcus aureus oligopeptide transport ATP-binding protein OppF or mw0181 SWALL:Q8NYL2 (EMBL:AP004822) (530 aa) fasta scores: E(): 2.6e-38, 42.53% id in 268 aa; peptide ABC transporter 654951..655817 Chlamydophila abortus S26/3 3337883 YP_219979.1 CDS CAB578 NC_004552.2 655810 656595 D Similar to Lactobacillus delbrueckii ATP-binding protein oligopeptide transporter OppF SWALL:Q8VPJ1 (EMBL:AY040221) (318 aa) fasta scores: E(): 7.9e-26, 35.04% id in 234 aa, and to Chlamydophila caviae peptide ABC transporter, ATP-binding protein cca00605 SWALL:Q822S4 (EMBL:AE016996) (261 aa) fasta scores: E(): 4.9e-85, 90.03% id in 261 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase atu3437 or agr_l_2779 SWALL:Q8UAD7 (EMBL:AE009274) (311 aa) fasta scores: E(): 2.2e-28, 38.86% id in 229 aa; peptide ATP-binding component of ABC transporter 655810..656595 Chlamydophila abortus S26/3 3337884 YP_219980.1 CDS CAB579 NC_004552.2 656884 657639 D Similar to Chlamydophila caviae hypothetical protein cca00606 SWALL:Q822S3 (EMBL:AE016996) (251 aa) fasta scores: E(): 4e-91, 95.21% id in 251 aa, and to Chlamydia pneumoniae hypothetical protein cpn0206/cp0561/cpj0206 SWALL:Y206_CHLPN (SWALL:Q9Z8X8) (251 aa) fasta scores: E(): 2.3e-78, 82.47% id in 251 aa, and to Chlamydophila pneumoniae TW-183 hypothetical protein cpb0210 SWALL:AAP98143 (EMBL:AE017157) (251 aa) fasta scores: E(): 2.3e-78, 82.47% id in 251 aa; hypothetical protein 656884..657639 Chlamydophila abortus S26/3 3337424 YP_219981.1 CDS CAB580 NC_004552.2 657686 659098 D Similar to Bacillus subtilis YflS protein SWALL:O34726 (EMBL:Z99108) (478 aa) fasta scores: E(): 1e-99, 52.25% id in 465 aa, and to Chlamydophila caviae sodium:sulfate symporter family protein cca00607 SWALL:Q822S2 (EMBL:AE016996) (470 aa) fasta scores: E(): 1.2e-175, 94.24% id in 469 aa; sodium:sulfate symporter 657686..659098 Chlamydophila abortus S26/3 3338074 YP_219982.1 CDS CAB581 NC_004552.2 659209 660867 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 659209..660867 Chlamydophila abortus S26/3 3338075 YP_219983.1 CDS CAB582 NC_004552.2 661026 661802 D Similar to Chlamydophila caviae dienelactone hydrolase cca00609 SWALL:Q822S0 (EMBL:AE016996) (270 aa) fasta scores: E(): 3.1e-87, 78.14% id in 270 aa, and to Chlamydia pneumoniae predicted acyltransferase cpn0161 or cpj0161 or cp0610 SWALL:Q9Z923 (EMBL:AE001603) (275 aa) fasta scores: E(): 1.5e-43, 47.72% id in 264 aa, and to Chlamydophila pneumoniae TW-183 cinnamoyl ester hydrolase CinI or cpb0162 SWALL:AAP98095 (EMBL:AE017157) (275 aa) fasta scores: E(): 1.5e-43, 47.72% id in 264 aa; ester hydrolase 661026..661802 Chlamydophila abortus S26/3 3337425 YP_219984.1 CDS CAB583 NC_004552.2 661812 663437 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 661812..663437 Chlamydophila abortus S26/3 3338167 YP_219985.1 CDS gseA NC_004552.2 663711 664946 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(663711..664946) Chlamydophila abortus S26/3 3337984 YP_219986.1 CDS leuS NC_004552.2 665009 667471 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(665009..667471) Chlamydophila abortus S26/3 3337448 YP_219987.1 CDS CAB586 NC_004552.2 667702 668649 D Similar to Chlamydophila caviae hypothetical protein cca00614 SWALL:Q822R5 (EMBL:AE016996) (315 aa) fasta scores: E(): 7.3e-104, 81.02% id in 311 aa, and to Chlamydia pneumoniae ct149 hypothetical protein cpn0152 SWALL:Q9Z931 (EMBL:AE001602) (316 aa) fasta scores: E(): 7e-67, 52.88% id in 312 aa; hypothetical protein 667702..668649 Chlamydophila abortus S26/3 3338168 YP_219988.1 CDS CAB587 NC_004552.2 668791 670311 D Similar to Sphingobium chlorophenolicum pentachlorophenol 4-monooxygenase PcpB SWALL:PCPB_SPHCR (SWALL:P42535) (537 aa) fasta scores: E(): 1.8e-08, 22.07% id in 453 aa, and to Chlamydophila caviae hypothetical protein cca00615 SWALL:Q822R4 (EMBL:AE016996) (506 aa) fasta scores: E(): 2.1e-191, 90.9% id in 506 aa; monooxygenase 668791..670311 Chlamydophila abortus S26/3 3338169 YP_219989.1 CDS CAB588 NC_004552.2 670416 674828 R Similar to Chlamydophila caviae hypothetical protein cca00616 SWALL:Q822R3 (EMBL:AE016996) (1458 aa) fasta scores: E(): 0, 60.35% id in 1468 aa, and to Chlamydia trachomatis hypothetical protein Ct147 SWALL:O84149 (EMBL:AE001288) (1449 aa) fasta scores: E(): 5.3e-40, 24.63% id in 1498 aa, and to Chlamydia pneumoniae ct147 hypothetical protein cpj0150 SWALL:Q9JSI7 (EMBL:AP002545) (1537 aa) fasta scores: E(): 1.8e-37, 27.09% id in 1480 aa; transmembrane protein complement(670416..674828) Chlamydophila abortus S26/3 3338170 YP_219990.1 CDS ligA NC_004552.2 674977 676959 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(674977..676959) Chlamydophila abortus S26/3 3337450 YP_219991.1 CDS CAB590 NC_004552.2 676967 678823 R Similar to Chlamydia trachomatis serine/threonine protein kinase ct145 SWALL:O84147 (EMBL:AE001288) (614 aa) fasta scores: E(): 6e-141, 61.06% id in 619 aa, and to Chlamydophila caviae protein kinase, cca00618 SWALL:Q822R1 (EMBL:AE016996) (618 aa) fasta scores: E(): 6.4e-208, 84.62% id in 618 aa; serine/threonine protein kinase complement(676967..678823) Chlamydophila abortus S26/3 3338171 YP_219992.1 CDS CAB591 NC_004552.2 679055 679447 R Similar to Chlamydophila caviae conserved domain protein cca00619 SWALL:Q822R0 (EMBL:AE016996) (121 aa) fasta scores: E(): 4.8e-34, 81.25% id in 112 aa, and to Chlamydophila pneumoniae TW-183 hypothetical protein cpb0148 SWALL:AAP98081 (EMBL:AE017157) (149 aa) fasta scores: E(): 3.3e-09, 39.78% id in 93 aa. Note the differing C-termini.; transmembrane protein complement(679055..679447) Chlamydophila abortus S26/3 3338172 YP_219993.1 CDS CAB592 NC_004552.2 679860 680231 D Very limited similarity to Fusobacterium nucleatum transcriptional regulator, MarR family fn1232 SWALL:Q8RE85 (EMBL:AE010629) (113 aa) fasta scores: E(): 4.6, 23.15% id in 95 aa; hypothetical protein 679860..680231 Chlamydophila abortus S26/3 3338173 YP_219994.1 CDS CAB593 NC_004552.2 680641 680967 R Similar to Chlamydophila caviae conserved domain protein cca00621 SWALL:Q822Q8 (EMBL:AE016996) (108 aa) fasta scores: E(): 2.2e-24, 66.03% id in 106 aa, and to Chlamydophila pneumoniae TW-183 hypothetical protein cpb0147 SWALL:AAP98080 (EMBL:AE017157) (161 aa) fasta scores: E(): 1.4e-05, 35.78% id in 95 aa, and to Chlamydia pneumoniae hypothetical protein cpn0146 or cpj0146 or cp0627 SWALL:Q9Z937 (EMBL:AE001601) (161 aa) fasta scores: E(): 1.4e-05, 35.78% id in 95 aa; transmembrane protein complement(680641..680967) Chlamydophila abortus S26/3 3338174 YP_219995.1 CDS CAB594 NC_004552.2 681081 681485 R Similar to Chlamydophila caviae hypothetical protein cca00622 SWALL:Q822Q7 (EMBL:AE016996) (143 aa) fasta scores: E(): 6e-15, 45.11% id in 133 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(681081..681485) Chlamydophila abortus S26/3 3338175 YP_219996.1 CDS CAB595 NC_004552.2 681564 683066 R Similar to Chlamydophila caviae hypothetical protein cca00623 SWALL:Q822Q6 (EMBL:AE016996) (502 aa) fasta scores: E(): 7.8e-165, 80.43% id in 501 aa, and to Chlamydophila pneumoniae TW-183 hypothetical protein cpb0146 SWALL:AAP98079 (EMBL:AE017157) (522 aa) fasta scores: E(): 1.2e-111, 58.05% id in 472 aa, and to Chlamydia pneumoniae hypothetical protein Cp0628 SWALL:Q9K227 (EMBL:AE002220) (522 aa) fasta scores: E(): 1.2e-111, 58.05% id in 472 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(681564..683066) Chlamydophila abortus S26/3 3338176 YP_219997.1 CDS pmp17G NC_004552.2 686033 688552 D Similar to Chlamydia pneumoniae probable outer membrane protein Pmp10 precursor or omp5 or cp0303 SWALL:PM10_CHLPN (SWALL:Q9RB65) (928 aa) fasta scores: E(): 2.8e-116, 42.07% id in 953 aa, and to Chlamydia psittaci Pomp90B precursor SWALL:P77792 (EMBL:U65943) (839 aa) fasta scores: E(): 0, 100% id in 839 aa. Note this CDS contains a homopolymeric run of 15 x G residues which may be important for phase variable expression of its protein product; hypothetical protein 686033..688552 Chlamydophila abortus S26/3 3337673 YP_219998.1 CDS clpB NC_004552.2 688680 691274 R Similar to Brucella suis protein ClpB ATPase stress-respsonse protein or br1864 SWALL:Q9AEM5 (EMBL:AJ251205) (874 aa) fasta scores: E(): 3.3e-133, 50% id in 864 aa, and to Chlamydophila caviae ATP-dependent Clp protease, subunit B ClpB or cca00625 SWALL:Q822Q4 (EMBL:AE016996) (864 aa) fasta scores: E(): 0, 95.83% id in 864 aa, and to Caulobacter crescentus ATP-dependent Clp protease, ATP-binding subunit ClpB cc0878 SWALL:Q9A9T4 (EMBL:AE005764) (859 aa) fasta scores: E(): 5.5e-135, 51.1% id in 863 aa; ClpB ATPase stress response protein complement(688680..691274) Chlamydophila abortus S26/3 3337631 YP_219999.1 CDS CAB600 NC_004552.2 691334 692137 R Similar to Chlamydophila caviae ABC transporter, periplasmic substrate-binding protein, cca00626 SWALL:Q822Q3 (EMBL:AE016996) (266 aa) fasta scores: E(): 4.4e-76, 75.28% id in 267 aa; ABC transporter component complement(691334..692137) Chlamydophila abortus S26/3 3338177 YP_220000.1 CDS CAB601 NC_004552.2 692137 692913 R Similar to Chlamydophila caviae ABC transporter, ATP-binding protein cca00627 SWALL:Q822Q2 (EMBL:AE016996) (248 aa) fasta scores: E(): 1.3e-80, 89.02% id in 246 aa, and to Leptospira interrogans ABC transporter ATP-binding protein La2056 SWALL:Q8F4I5 (EMBL:AE011378) (255 aa) fasta scores: E(): 1.5e-26, 38.16% id in 262 aa, and to Synechococcus elongatus ABC transporter ATP-binding protein tll0328 SWALL:Q8DLZ8 (EMBL:AP005370) (268 aa) fasta scores: E(): 9.5e-26, 40.22% id in 266 aa; ABC transporter ATP-binding protein complement(692137..692913) Chlamydophila abortus S26/3 3338178 YP_220001.1 CDS CAB602 NC_004552.2 692922 693707 R Similar to Pseudomonas putida toluene tolerance protein Ttg2B SWALL:Q9Z401 (EMBL:AF106002) (265 aa) fasta scores: E(): 2.7e-20, 34.72% id in 216 aa, and to Chlamydophila caviae ABC transporter, permease, cca00628 SWALL:Q822Q1 (EMBL:AE016996) (263 aa) fasta scores: E(): 1.3e-90, 93.84% id in 260 aa, and to Pirellula sp probable permease of ABC transporter rb7135 SWALL:CAD75200 (EMBL:BX294145) (296 aa) fasta scores: E(): 1.1e-24, 41.66% id in 204 aa; permease component of ABC transporter complement(692922..693707) Chlamydophila abortus S26/3 3338179 YP_220002.1 CDS hemL NC_004552.2 693745 695058 R catalyzes the formation of 5-aminolevulinate from (S)-4-amino-5-oxopentanoate; glutamate-1-semialdehyde aminotransferase complement(693745..695058) Chlamydophila abortus S26/3 3337995 YP_220003.1 CDS CAB604 NC_004552.2 695151 695720 R Similar to Pseudomonas aeruginosa transcriptional regulator AlgH or pa0405 SWALL:Q9RQ16 (EMBL:AF137022) (189 aa) fasta scores: E(): 1.4e-10, 31.57% id in 171 aa, and to Chlamydophila caviae transcriptional regulator, cca00630 SWALL:Q822P9 (EMBL:AE016996) (189 aa) fasta scores: E(): 2.3e-74, 93.65% id in 189 aa, and to Chlorobium tepidum hypothetical protein Ct0663 SWALL:Q8KEM4 (EMBL:AE012839) (187 aa) fasta scores: E(): 6.9e-23, 37.91% id in 182 aa; hypothetical protein complement(695151..695720) Chlamydophila abortus S26/3 3338180 YP_220004.1 CDS CAB605 NC_004552.2 695742 696182 R Similar to Chlamydophila caviae hypothetical protein cca00631 SWALL:Q822P8 (EMBL:AE016996) (146 aa) fasta scores: E(): 1.8e-53, 89.72% id in 146 aa, and to Chlamydophila pneumoniae TW-183 hypothetical protein cpb0141 SWALL:AAP98074 (EMBL:AE017157) (146 aa) fasta scores: E(): 2e-47, 80.13% id in 146 aa, and to Chlamydia pneumoniae hypothetical protein YqdE or cpn0140 or cp0632 SWALL:Q9Z943 (EMBL:AE001600) (146 aa) fasta scores: E(): 2e-47, 80.13% id in 146 aa; hypothetical protein complement(695742..696182) Chlamydophila abortus S26/3 3338181 YP_220005.1 CDS CAB606 NC_004552.2 696179 696880 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(696179..696880) Chlamydophila abortus S26/3 3338182 YP_220006.1 CDS CAB607 NC_004552.2 696966 697085 R Doubtful CDS with no significant database hits; hypothetical protein complement(696966..697085) Chlamydophila abortus S26/3 3338183 YP_220007.1 CDS CAB610 NC_004552.2 698886 700136 R Similar to Chlamydophila caviae hypothetical protein cca00634 SWALL:Q822P5 (EMBL:AE016996) (416 aa) fasta scores: E(): 1.3e-65, 42.5% id in 400 aa, and to Chlamydophila caviae hypothetical protein cca00636 SWALL:Q822P3 (EMBL:AE016996) (411 aa) fasta scores: E(): 5.6e-62, 42.56% id in 397 aa, and to Chlamydophila caviae hypothetical protein cca00639 SWALL:Q822P0 (EMBL:AE016996) (556 aa) fasta scores: E(): 1.6e-36, 32.82% id in 326 aa; transmembrane protein complement(698886..700136) Chlamydophila abortus S26/3 3338185 YP_220008.1 CDS CAB611 NC_004552.2 700457 701875 R Similar to Chlamydophila caviae hypothetical protein cca00639 SWALL:Q822P0 (EMBL:AE016996) (556 aa) fasta scores: E(): 1.1e-80, 47.01% id in 436 aa, and to Chlamydophila caviae hypothetical protein cca00634 SWALL:Q822P5 (EMBL:AE016996) (416 aa) fasta scores: E(): 1.1e-38, 34.84% id in 330 aa, and to Chlamydophila caviae hypothetical protein cca00636 SWALL:Q822P3 (EMBL:AE016996) (411 aa) fasta scores: E(): 5.6e-37, 38.09% id in 294 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(700457..701875) Chlamydophila abortus S26/3 3338186 YP_220009.1 CDS CAB612 NC_004552.2 702479 703234 D Similar to Chlamydophila caviae hypothetical protein cca00640 SWALL:Q822N9 (EMBL:AE016996) (251 aa) fasta scores: E(): 3.3e-83, 79.28% id in 251 aa, and to Chlamydophila pneumoniae TW-183 YbgI or cpb0138 SWALL:AAP98071 (EMBL:AE017157) (251 aa) fasta scores: E(): 9.1e-70, 68.12% id in 251 aa, and to Chlamydia pneumoniae hypothetical protein cpn0137/cp0635/cpj0137 SWALL:Y137_CHLPN (SWALL:Q9Z946) (251 aa) fasta scores: E(): 9.1e-70, 68.12% id in 251 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 702479..703234 Chlamydophila abortus S26/3 3338187 YP_220010.1 CDS CAB613 NC_004552.2 703327 705153 D Similar to Bacillus licheniformis Pz-peptidase SWALL:P70922 (EMBL:D88209) (628 aa) fasta scores: E(): 1.5e-82, 36.92% id in 612 aa, and to Chlamydophila caviae oligoendopeptidase F PepF or cca00641 SWALL:Q822N8 (EMBL:AE016996) (609 aa) fasta scores: E(): 0, 86.7% id in 609 aa; peptidase 703327..705153 Chlamydophila abortus S26/3 3338188 YP_220011.1 CDS groES NC_004552.2 705281 705589 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 705281..705589 Chlamydophila abortus S26/3 3337976 YP_220012.1 CDS groEL NC_004552.2 705639 707273 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 705639..707273 Chlamydophila abortus S26/3 3337974 YP_220013.1 CDS CAB616 NC_004552.2 707378 708217 D Similar to Chlamydophila caviae hypothetical protein CCA00644 SWALL:Q822N7 (EMBL:AE016996) (267 aa) fasta scores: E(): 1.1e-94, 86.89% id in 267 aa, and to Chlamydia pneumoniae ChlPS hypothetical protein CPN0133 or CPJ0133 or CP0639 SWALL:Q9Z948 (EMBL:AE001599) (257 aa) fasta scores: E(): 5.2e-63, 60.67% id in 267 aa; hypothetical protein 707378..708217 Chlamydophila abortus S26/3 3338189 YP_220014.1 CDS CAB617 NC_004552.2 708480 709103 D hypothetical protein 708480..709103 Chlamydophila abortus S26/3 3338190 YP_220015.1 CDS CAB618 NC_004552.2 709149 710054 D Similar in parts to Chlamydophila caviae conserved domain protein cca00647 SWALL:Q822N4 (EMBL:AE016996) (269 aa) fasta scores: E(): 2.8e-16, 41.12% id in 214 aa; hypothetical protein 709149..710054 Chlamydophila abortus S26/3 3338191 YP_220016.1 CDS CAB619 NC_004552.2 710056 710871 R Similar to Chlamydophila pneumoniae TW-183 biotin--[acetyl-CoA-carboxylase] ligase CPB0130 SWALL:AAP98063 (EMBL:AE017157) (259 aa) fasta scores: E(): 4.1e-56, 54.47% id in 257 aa, and to Rickettsia conorii similarity to N-terminal of biotin-protein ligase RC0781 SWALL:Q92HJ0 (EMBL:AE008634) (250 aa) fasta scores: E(): 7.9e-17, 34.12% id in 252 aa; hypothetical protein complement(710056..710871) Chlamydophila abortus S26/3 3338192 YP_220017.1 CDS CAB620 NC_004552.2 710968 711987 D Similar to Shigella flexneri transmembrane subunit YtfF or SF4276 SWALL:Q83IK9 (EMBL:AE015435) (324 aa) fasta scores: E(): 1.3e-21, 27.45% id in 306 aa, and to Escherichia coli hypothetical protein YtfF or B4210 SWALL:YTFF_ECOLI (SWALL:P39314) (324 aa) fasta scores: E(): 5.4e-21, 27.12% id in 306 aa; hypothetical protein 710968..711987 Chlamydophila abortus S26/3 3338193 YP_220018.1 CDS CAB621 NC_004552.2 712482 714680 D Similar to Chlorobium tepidum exodeoxyribonuclease V, alpha subunit, CT1402 SWALL:Q8KCL3 (EMBL:AE012898) (734 aa) fasta scores: E(): 1.4e-94, 38.62% id in 725 aa, and to Clostridium tetani exodeoxyribonuclease V alpha chain CTC00322 SWALL:Q898W6 (EMBL:AE015937) (743 aa) fasta scores: E(): 1.7e-76, 38.15% id in 747 aa; exodeoxyribonuclease 712482..714680 Chlamydophila abortus S26/3 3338194 YP_220019.1 CDS metG NC_004552.2 714696 716351 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(714696..716351) Chlamydophila abortus S26/3 3337459 YP_220020.1 CDS CAB623 NC_004552.2 716351 716647 R Similar to Chlamydophila caviae hypothetical protein CCA00652 SWALL:Q822M9 (EMBL:AE016996) (98 aa) fasta scores: E(): 2e-28, 81.63% id in 98 aa, and to Chlamydia pneumoniae protein CPN0121 or CP0652 or CPJ0121 SWALL:Y121_CHLPN (SWALL:Q9Z960) (97 aa) fasta scores: E(): 5.3e-22, 69.38% id in 98 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(716351..716647) Chlamydophila abortus S26/3 3338195 YP_220021.1 CDS gmk NC_004552.2 716644 717258 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(716644..717258) Chlamydophila abortus S26/3 3337275 YP_220022.1 CDS rnhB NC_004552.2 717265 717903 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(717265..717903) Chlamydophila abortus S26/3 3338092 YP_220023.1 CDS rplS NC_004552.2 717957 718325 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(717957..718325) Chlamydophila abortus S26/3 3337491 YP_220024.1 CDS trmD NC_004552.2 718350 719417 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; Chlamydial proteins show a C-terminal extension of unknown function; tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein complement(718350..719417) Chlamydophila abortus S26/3 3338221 YP_220025.1 CDS rpsP NC_004552.2 719433 719792 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(719433..719792) Chlamydophila abortus S26/3 3338117 YP_220026.1 CDS ffh NC_004552.2 719783 721126 R Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 signal recognition particle protein Ffh or B2610 or C3131 or Z3904 or ECS3473 SWALL:SR54_ECOLI (SWALL:P07019) (453 aa) fasta scores: E(): 3.8e-58, 40.8% id in 446 aa, and to Bacillus halodurans signal recognition particle Ffh or BH2484 SWALL:Q9KA10 (EMBL:AP001515) (451 aa) fasta scores: E(): 4.6e-62, 43.21% id in 442 aa; signal recognition particle protein complement(719783..721126) Chlamydophila abortus S26/3 3338044 YP_220027.1 CDS CAB629 NC_004552.2 721153 722004 R HemK; PrmC; transfers a methyl group from S-adenosyl-methionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB possibly stimulating release of completed polypeptide chains; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(721153..722004) Chlamydophila abortus S26/3 3337276 YP_220028.1 CDS prfA NC_004552.2 721982 723067 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(721982..723067) Chlamydophila abortus S26/3 3338067 YP_220029.1 CDS rpmE2 NC_004552.2 723455 723781 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(723455..723781) Chlamydophila abortus S26/3 3338095 YP_220030.1 CDS CAB632 NC_004552.2 723866 724621 D Similar to Chlamydophila caviae hypothetical protein CCA00662 SWALL:Q822M0 (EMBL:AE016996) (249 aa) fasta scores: E(): 2.2e-74, 74.08% id in 247 aa, and to Chlamydia pneumoniae CT021 hypothetical protein CPN0111 or CPJ0111 or CP0662 SWALL:Q9Z970 (EMBL:AE001597) (251 aa) fasta scores: E(): 2.8e-44, 45.52% id in 246 aa; hypothetical protein 723866..724621 Chlamydophila abortus S26/3 3337277 YP_220031.1 CDS CAB633 NC_004552.2 724920 726812 D Similar to Chlamydophila caviae signal peptidase I, CCA00663 SWALL:Q822L9 (EMBL:AE016996) (629 aa) fasta scores: E(): 0, 85.87% id in 630 aa, and to Chlamydophila pneumoniae TW-183 signal peptidase I CPB0111 SWALL:AAP98044 (EMBL:AE017157) (636 aa) fasta scores: E(): 9e-172, 68.71% id in 636 aa; signal peptidase I 724920..726812 Chlamydophila abortus S26/3 3337278 YP_220032.1 CDS ileS NC_004552.2 726872 730003 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase complement(726872..730003) Chlamydophila abortus S26/3 3337999 YP_220033.1 CDS CAB635 NC_004552.2 730770 731279 D Similar to Chlamydophila caviae hypothetical protein CCA00665 SWALL:Q822L7 (EMBL:AE016996) (165 aa) fasta scores: E(): 1.8e-38, 60% id in 165 aa, and to Chlamydia pneumoniae similarity to CT018 CPN0108 or CPJ0108 or CP0666 SWALL:Q9Z973 (EMBL:AE001597) (185 aa) fasta scores: E(): 9.5e-19, 38.15% id in 152 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 730770..731279 Chlamydophila abortus S26/3 3337279 YP_220034.1 CDS CAB636 NC_004552.2 731274 732566 R Similar to Synechococcus sp. PhoH SEA0005 SWALL:Q935Z1 (EMBL:U30252) (442 aa) fasta scores: E(): 7.5e-52, 45.67% id in 451 aa, and to Bacillus cereus phosphate starvation-inducible protein PhoH protein BC3951 SWALL:Q819M5 (EMBL:AE017011) (442 aa) fasta scores: E(): 1.4e-49, 43.55% id in 450 aa; phosphate starvation-inducible protein complement(731274..732566) Chlamydophila abortus S26/3 3337280 YP_220035.1 CDS CAB637 NC_004552.2 732866 733648 D Similar to Chlamydophila caviae hypothetical protein CCA00667 SWALL:Q822L5 (EMBL:AE016996) (273 aa) fasta scores: E(): 1e-92, 88.84% id in 260 aa, and to Chlamydia pneumoniae CTt016 hypothetical protein CPN0105 or CPJ0105 or CP0669 SWALL:Q9Z976 (EMBL:AE001596) (273 aa) fasta scores: E(): 7.3e-72, 71.37% id in 255 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 732866..733648 Chlamydophila abortus S26/3 3337281 YP_220036.1 CDS CAB638 NC_004552.2 733793 735019 D Similar to Chlamydophila caviae hypothetical protein CCA00668 SWALL:Q822L4 (EMBL:AE016996) (409 aa) fasta scores: E(): 4.4e-125, 86.55% id in 409 aa, and to Chlamydia pneumoniae CT017 hypothetical protein CPN0104 or CPJ0104 or CP0670 SWALL:Q9Z977 (EMBL:AE001596) (400 aa) fasta scores: E(): 5.9e-98, 67.98% id in 406 aa; hypothetical protein 733793..735019 Chlamydophila abortus S26/3 3337282 YP_220037.1 CDS CAB639 NC_004552.2 735021 735902 R Similar to the C-terminus of both Oryza sativa P0048D08.24 protein SWALL:Q8H4C1 (EMBL:AP004269) (426 aa) fasta scores: E(): 6.1e-08, 23.48% id in 264 aa and Arabidopsis thaliana hypothetical protein SWALL:Q8LFU2 (EMBL:AY084639) (347 aa) fasta scores: E(): 1.3e-07, 24.29% id in 284 aa. Note: All significant database hits are to eukaryotic entries; hypothetical protein complement(735021..735902) Chlamydophila abortus S26/3 3337283 YP_220038.1 CDS CAB640 NC_004552.2 736190 737251 R Similar to Chlorobium tepidum cytochrome D ubiquinol oxidase, subunit II CydB or CT1819 SWALL:Q8KBG8 (EMBL:AE012934) (340 aa) fasta scores: E(): 5.3e-27, 31.08% id in 341 aa, and to Xanthomonas axonopodis cyanide insensitive terminal oxidase CioB or XAC3736 SWALL:Q8PG81 (EMBL:AE012023) (340 aa) fasta scores: E(): 4.8e-26, 32.75% id in 345 aa; cytochrome D ubiquinol oxidase, subunit II complement(736190..737251) Chlamydophila abortus S26/3 3337284 YP_220039.1 CDS CAB641 NC_004552.2 737254 738594 R Similar to Bacillus anthracis cytochrome D ubiquinol oxidase, subunit I CydA-1 or BA1943 SWALL:Q81RU4 (EMBL:AE017030) (467 aa) fasta scores: E(): 4.9e-59, 36.93% id in 444 aa, and to Bacillus subtilis cytochrome D ubiquinol oxidase subunit I CydA or BSU38760 SWALL:CYDA_BACSU (SWALL:P94364) (468 aa) fasta scores: E(): 3.6e-53, 34.34% id in 463 aa; cytochrome D ubiquinol oxidase, subunit I complement(737254..738594) Chlamydophila abortus S26/3 3337285 YP_220040.1 CDS CAB642 NC_004552.2 738793 739587 D Similar to Streptococcus pneumoniae conserved hypothetical protein SPR1419 SWALL:Q8DP14 (EMBL:AE008512) (292 aa) fasta scores: E(): 3.3e-26, 35.65% id in 258 aa, and to Lactococcus lactis hypothetical protein YedA or LL0423 SWALL:Q9CIE0 (EMBL:AE006279) (292 aa) fasta scores: E(): 7e-26, 36.03% id in 247 aa; hypothetical protein 738793..739587 Chlamydophila abortus S26/3 3337286 YP_220041.1 CDS CAB643 NC_004552.2 739569 740852 D Similar to Chlamydophila caviae hypothetical protein CCA00672 SWALL:Q822L0 (EMBL:AE016996) (427 aa) fasta scores: E(): 3.5e-159, 93.67% id in 427 aa, and to Chlamydia pneumoniae hypothetical protein CP0674 SWALL:Q9K219 (EMBL:AE002225) (425 aa) fasta scores: E(): 9.9e-133, 76.34% id in 427 aa. Note: This CDS has a possible alternative start codon at residue 22; hypothetical protein 739569..740852 Chlamydophila abortus S26/3 3337287 YP_220042.1 CDS CAB644 NC_004552.2 741070 742437 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 741070..742437 Chlamydophila abortus S26/3 3337288 YP_220043.1 CDS pyk NC_004552.2 742818 744263 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(742818..744263) Chlamydophila abortus S26/3 3338071 YP_220044.1 CDS CAB646 NC_004552.2 744554 749974 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 744554..749974 Chlamydophila abortus S26/3 3337289 YP_220045.1 CDS pknD NC_004552.2 749969 752770 R PknD; responsible for phosphorylation of proteins on serine and threonine residues; similar to eukaryotic Ser/Thr kinases; in Chlamydia trachomatis itseems to interact with Pkn1, another serine/threonine-protein kinase; serine/threonine-protein kinase complement(749969..752770) Chlamydophila abortus S26/3 3337290 YP_220046.1 CDS valS NC_004552.2 752791 755613 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(752791..755613) Chlamydophila abortus S26/3 3338242 YP_220047.1 CDS CAB649 NC_004552.2 755669 756145 R Similar to Chlamydophila caviae hypothetical protein CCA00679 SWALL:Q822K3 (EMBL:AE016996) (162 aa) fasta scores: E(): 1.1e-50, 79.11% id in 158 aa, and to Chlamydia pneumoniae CT303 hypothetical protein CPN0093 or CPJ0093 SWALL:Q9Z988 (EMBL:AE001594) (169 aa) fasta scores: E(): 2.1e-39, 63.29% id in 158 aa. Note: This CDS contains a possible alternative start codon at residue 29; hypothetical protein complement(755669..756145) Chlamydophila abortus S26/3 3337291 YP_220048.1 CDS atpK NC_004552.2 756105 756530 R produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K complement(756105..756530) Chlamydophila abortus S26/3 3337271 YP_220049.1 CDS atpI NC_004552.2 756665 758614 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I complement(756665..758614) Chlamydophila abortus S26/3 3337270 YP_220050.1 CDS atpD NC_004552.2 758605 759231 R produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D complement(758605..759231) Chlamydophila abortus S26/3 3337269 YP_220051.1 CDS atpB NC_004552.2 759216 760532 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(759216..760532) Chlamydophila abortus S26/3 3337268 YP_220052.1 CDS atpA NC_004552.2 760539 762314 R produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A complement(760539..762314) Chlamydophila abortus S26/3 3337267 YP_220053.1 CDS CAB655 NC_004552.2 762308 763108 R Similar to Chlamydophila caviae hypothetical protein cca00685 SWALL:Q822J7 (EMBL:AE016996) (266 aa) fasta scores: E(): 1.1e-99, 93.6% id in 266 aa, and to Chlamydia muridarum hypothetical protein Tc0583 tc0583 SWALL:Y583_CHLMU (SWALL:Q9PK84) (266 aa) fasta scores: E(): 5.9e-74, 69.54% id in 266 aa, and to Chlamydia pneumoniae hypothetical protein cpn0087/cp0687/cpj0087 cpn0087 or cp0687 or cpj0087 SWALL:Y087_CHLPN (SWALL:Q9Z994) (266 aa) fasta scores: E(): 1.2e-73, 68.79% id in 266 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(762308..763108) Chlamydophila abortus S26/3 3337292 YP_220054.1 CDS CAB656 NC_004552.2 763154 763780 R produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit E complement(763154..763780) Chlamydophila abortus S26/3 3337293 YP_220055.1 CDS CAB657 NC_004552.2 763888 764640 D Similar to Chlamydophila caviae hypothetical protein cca00687 SWALL:Q822J5 (EMBL:AE016996) (252 aa) fasta scores: E(): 6.4e-66, 76.19% id in 252 aa, and to Chlamydia pneumoniae ct311 hypothetical protein cpn0085 or cpj0085 or cp0690 SWALL:Q9Z996 (EMBL:AE001594) (247 aa) fasta scores: E(): 2.2e-44, 56.74% id in 252 aa, and to Chlamydia muridarum hypothetical protein Tc0585 SWALL:Q9PK82 (EMBL:AE002327) (237 aa) fasta scores: E(): 1.9e-42, 55.46% id in 247 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 763888..764640 Chlamydophila abortus S26/3 3337294 YP_220056.1 CDS CAB658 NC_004552.2 764655 765035 R Similar to Chlamydophila caviae hypothetical protein cca00688 SWALL:Q822J4 (EMBL:AE016996) (136 aa) fasta scores: E(): 1.3e-43, 89.68% id in 126 aa, and to Chlamydia pneumoniae predicted ferredoxin cpn0084 or cpj0084 or cp0691 SWALL:Q9Z997 (EMBL:AE001594) (130 aa) fasta scores: E(): 9.1e-32, 66.11% id in 121 aa, and to Chlamydia trachomatis predicted ferredoxin ct312 SWALL:O84314 (EMBL:AE001303) (123 aa) fasta scores: E(): 1.4e-26, 61.06% id in 113 aa. Note the differing N-termini. Only significant database matches are to Chlamydiaceae proteins.; hypothetical protein complement(764655..765035) Chlamydophila abortus S26/3 3337295 YP_220057.1 CDS talA NC_004552.2 765090 766073 R Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B complement(765090..766073) Chlamydophila abortus S26/3 3338214 YP_220058.1 CDS rpoC NC_004552.2 766187 770368 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(766187..770368) Chlamydophila abortus S26/3 3338102 YP_220059.1 CDS rpoB NC_004552.2 770396 774154 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(770396..774154) Chlamydophila abortus S26/3 3338101 YP_220060.2 CDS rplL NC_004552.2 774294 774689 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(774294..774689) Chlamydophila abortus S26/3 3337484 YP_220061.1 CDS rplJ NC_004552.2 774731 775243 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(774731..775243) Chlamydophila abortus S26/3 3337482 YP_220062.1 CDS rplA NC_004552.2 775257 775955 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(775257..775955) Chlamydophila abortus S26/3 3337475 YP_220063.1 CDS rplK NC_004552.2 775978 776403 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(775978..776403) Chlamydophila abortus S26/3 3337483 YP_220064.1 CDS nusG NC_004552.2 776512 777060 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(776512..777060) Chlamydophila abortus S26/3 3337473 YP_220065.1 CDS secE NC_004552.2 777065 777310 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(777065..777310) Chlamydophila abortus S26/3 3337296 YP_220066.1 CDS tuf NC_004552.2 777471 778655 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(777471..778655) Chlamydophila abortus S26/3 3338236 YP_220067.1 CDS infA NC_004552.2 778848 779069 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(778848..779069) Chlamydophila abortus S26/3 3337297 YP_220068.1 CDS CAB670 NC_004552.2 779368 780354 D Similar to Chlamydophila caviae hypothetical protein cca00700 SWALL:Q822I2 (EMBL:AE016996) (328 aa) fasta scores: E(): 2.1e-99, 81.15% id in 329 aa, and to Chlamydia pneumoniae ct324 hypothetical protein cpn0072 or cpj0072 SWALL:Q9Z9A9 (EMBL:AE001592) (335 aa) fasta scores: E(): 5.3e-54, 50.48% id in 311 aa; transmembrane protein 779368..780354 Chlamydophila abortus S26/3 3337298 YP_220069.1 CDS CAB671 NC_004552.2 780357 780806 D Similar to Chlamydophila caviae hypothetical protein cca00701 SWALL:Q822I1 (EMBL:AE016996) (149 aa) fasta scores: E(): 6.8e-53, 87.91% id in 149 aa, and to Chlamydia pneumoniae ct325 hypothetical protein cpn0071 SWALL:Q9Z9B0 (EMBL:AE001592) (149 aa) fasta scores: E(): 6.1e-42, 73.23% id in 142 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein bt2547 SWALL:Q8A4Q0 (EMBL:AE016936) (141 aa) fasta scores: E(): 1.3e-07, 33.92% id in 112 aa; hypothetical protein 780357..780806 Chlamydophila abortus S26/3 3337299 YP_220070.1 CDS CAB672 NC_004552.2 781329 781922 R Similar to Chlamydophila caviae hypothetical protein cca00706 SWALL:Q822H6 (EMBL:AE016996) (199 aa) fasta scores: E(): 8.6e-45, 63.26% id in 196 aa. Also similar to several BioY-family proteins including: Chlamydia muridarum SWALL:Q9PK35 (EMBL:AE002332)(196 aa) fasta scores: E()=8.4e-30, 50%i d in 180 aa.; transmembrane protein complement(781329..781922) Chlamydophila abortus S26/3 3337300 YP_220071.1 CDS CAB673 NC_004552.2 782200 783669 D Weakly similar to Chlamydophila caviae hypothetical protein Cca00707 SWALL:Q822H5 (EMBL:AE016996) (621 aa) fasta scores: E(): 1.1e-30, 33.87% id in 431 aa; hypothetical protein 782200..783669 Chlamydophila abortus S26/3 3337301 YP_220072.1 CDS CAB673A NC_004552.2 783917 784267 R Similar to Chlamydophila caviae hypothetical protein cca00708 SWALL:Q822H4 (EMBL:AE016996) (116 aa) fasta scores: E(): 1e-26, 66.66% id in 108 aa; transmembrane protein complement(783917..784267) Chlamydophila abortus S26/3 3337593 YP_220073.1 CDS CAB674 NC_004552.2 784339 786021 R Similar to Chlamydophila caviae hypothetical protein cca00709 SWALL:Q822H3 (EMBL:AE016996) (556 aa) fasta scores: E(): 3.7e-145, 63.92% id in 560 aa, and to Chlamydia pneumoniae hypothetical protein cpn0066 or cpj0066 or cp0708 SWALL:Q9Z9B5 (EMBL:AE001592) (577 aa) fasta scores: E(): 3.4e-67, 36.54% id in 561 aa; transmembrane protein complement(784339..786021) Chlamydophila abortus S26/3 3337594 YP_220074.1 CDS CAB676 NC_004552.2 786387 786860 R Similar to Chlamydophila caviae hypothetical protein cca00710 SWALL:Q822H2 (EMBL:AE016996) (176 aa) fasta scores: E(): 2.6e-40, 71.97% id in 157 aa. Note the differing N-termini. Only significant database matches are to Chlamydiaceae proteins.; hypothetical protein complement(786387..786860) Chlamydophila abortus S26/3 3337595 YP_220075.1 CDS dapA NC_004552.2 787635 788501 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(787635..788501) Chlamydophila abortus S26/3 3337639 YP_220076.1 CDS lysC NC_004552.2 788514 789836 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase complement(788514..789836) Chlamydophila abortus S26/3 3337457 YP_220077.1 CDS asd NC_004552.2 789824 790825 R catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase complement(789824..790825) Chlamydophila abortus S26/3 3337264 YP_220078.1 CDS dapB NC_004552.2 791006 791746 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(791006..791746) Chlamydophila abortus S26/3 3337640 YP_220079.1 CDS phhA NC_004552.2 791950 792783 D phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 791950..792783 Chlamydophila abortus S26/3 3337596 YP_220080.1 CDS CAB682 NC_004552.2 792770 793408 D Similar to Fusobacterium nucleatum subsp. vincentii ATCC 49256 transporter fnv1336 SWALL:EAA24320 (EMBL:AABF01000039) (235 aa) fasta scores: E(): 3.2e-08, 27.77% id in 198 aa, and to Chlamydophila caviae conserved hypothetical integral membrane protein tigr00697 cca00717 SWALL:Q822G5 (EMBL:AE016996) (223 aa) fasta scores: E(): 8.7e-59, 73.03% id in 204 aa, and to Thermotoga maritima hypothetical protein Tm0792 SWALL:Q9WZP9 (EMBL:AE001747) (212 aa) fasta scores: E(): 1.1e-13, 29.59% id in 196 aa; transmembrane transport protein 792770..793408 Chlamydophila abortus S26/3 3337597 YP_220081.1 CDS CAB683 NC_004552.2 793498 794631 D Similar to Chlamydophila caviae hypothetical protein cca00718 SWALL:Q822G4 (EMBL:AE016996) (359 aa) fasta scores: E(): 6.2e-82, 57.71% id in 350 aa, and to Chlamydia muridarum hypothetical protein Tc0258 SWALL:Q9PL50 (EMBL:AE002292) (335 aa) fasta scores: E(): 9.4e-16, 31.37% id in 290 aa, and to Chlamydia trachomatis membrane thiol protease ct868 SWALL:O84876 (EMBL:AE001360) (418 aa) fasta scores: E(): 1.5e-10, 28.09% id in 210 aa; hypothetical protein 793498..794631 Chlamydophila abortus S26/3 3337598 YP_220082.1 CDS CAB684 NC_004552.2 794643 795434 D Similar to Klebsiella aerogenes protein MoaE SWALL:MOAE_KLEAE (SWALL:P54795) (257 aa) fasta scores: E(): 2.2e-10, 23.67% id in 245 aa, and to Chlamydophila caviae short chain dehydrogenase, cca00719 SWALL:Q822G3 (EMBL:AE016996) (282 aa) fasta scores: E(): 1.9e-79, 79.46% id in 263 aa, and to Thermoplasma acidophilum 3-oxoacyl-[acyl-carrier-protein] reductase related protein ta0822 SWALL:Q9HJY9 (EMBL:AL445065) (269 aa) fasta scores: E(): 1.2e-12, 28.96% id in 252 aa; monoamine dehydrogenase/reductase 794643..795434 Chlamydophila abortus S26/3 3337599 YP_220083.1 CDS bioB NC_004552.2 795683 796678 D Similar to Erwinia herbicola biotin synthase BioB SWALL:BIOB_ERWHE (SWALL:Q47862) (346 aa) fasta scores: E(): 6.4e-58, 48.55% id in 311 aa, and to Chlamydia pneumoniae biotin synthase BioB or cpn1044 or cp0808 SWALL:Q9Z6L5 (EMBL:AE001684) (331 aa) fasta scores: E(): 1.5e-103, 73.62% id in 326 aa, and to Anabaena sp. biotin synthase alr1921 SWALL:Q8YVQ3 (EMBL:AP003587) (335 aa) fasta scores: E(): 7.4e-71, 55.59% id in 322 aa; biotin synthase 795683..796678 Chlamydophila abortus S26/3 3337273 YP_220084.1 CDS bioF NC_004552.2 796657 797805 D Similar to Bacillus sphaericus 8-amino-7-oxononanoate synthase BioF SWALL:BIOF_BACSH (SWALL:P22806) (389 aa) fasta scores: E(): 8.8e-38, 35.89% id in 351 aa, and to Chlamydia pneumoniae oxononanoate synthase BioF_2 or cpn1043 or cp0809 SWALL:Q9Z6L6 (EMBL:AE001684) (382 aa) fasta scores: E(): 9.2e-88, 60.36% id in 381 aa, and to Pasteurella multocida BioF or pm1901 SWALL:Q9CJU0 (EMBL:AE006227) (387 aa) fasta scores: E(): 1.8e-36, 36.05% id in 380 aa; 8-amino-7-oxononanoate synthase 796657..797805 Chlamydophila abortus S26/3 3337629 YP_220085.1 CDS bioD NC_004552.2 797790 798413 D Similar to Bacillus subtilis dethiobiotin synthetase BioD or bsu30210 SWALL:BIOD_BACSU (SWALL:P53558) (231 aa) fasta scores: E(): 7e-05, 29.46% id in 207 aa, and to Chlamydia pneumoniae dethiobiotin synthetase BioD or cpn1042 or cp0810 SWALL:BIOD_CHLPN (SWALL:Q9Z6L7) (219 aa) fasta scores: E(): 3.5e-51, 62.94% id in 197 aa, and to Rhizobium loti dethiobiotin synthetase mll9098 SWALL:Q982F7 (EMBL:AP003015) (211 aa) fasta scores: E(): 2.7e-22, 35.67% id in 199 aa; dethiobiotin synthetase 797790..798413 Chlamydophila abortus S26/3 3337274 YP_220086.1 CDS bioA NC_004552.2 798407 799684 D Similar to Escherichia coli adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA or b0774 SWALL:BIOA_ECOLI (SWALL:P12995) (429 aa) fasta scores: E(): 8.6e-51, 37.19% id in 414 aa, and to Chlamydia pneumoniae adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA or cpn1041 or Cp0811 SWALL:Q9Z6L8 (EMBL:AE001684) (423 aa) fasta scores: E(): 1.1e-118, 66.82% id in 422 aa, and to Bradyrhizobium japonicum id904 id904 or BioA or blr2099 SWALL:Q9AMS3 (EMBL:AF322013) (421 aa) fasta scores: E(): 3.1e-65, 43.3% id in 411 aa; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 798407..799684 Chlamydophila abortus S26/3 3337272 YP_220087.1 CDS CAB689 NC_004552.2 799666 800325 D Similar to Chlamydia pneumoniae hypothetical protein cpn1040 or cpj1040 or cp0812 SWALL:Q9Z6L9 (EMBL:AE001684) (223 aa) fasta scores: E(): 1.7e-52, 64.78% id in 213 aa, and to Leptospira interrogans conserved hypothetical protein La2331 SWALL:Q8F3R9 (EMBL:AE011402) (215 aa) fasta scores: E(): 3.3e-16, 37.65% id in 162 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 799666..800325 Chlamydophila abortus S26/3 3337600 YP_220088.1 CDS aroA NC_004552.2 800409 801746 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 800409..801746 Chlamydophila abortus S26/3 3337259 YP_220089.1 CDS aroM NC_004552.2 801682 802203 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 801682..802203 Chlamydophila abortus S26/3 3337263 YP_220090.1 CDS aroC NC_004552.2 802200 803279 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 802200..803279 Chlamydophila abortus S26/3 3337261 YP_220091.1 CDS aroB NC_004552.2 803276 804415 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 803276..804415 Chlamydophila abortus S26/3 3337260 YP_220092.1 CDS aroDE NC_004552.2 804396 805829 D AroDE; bifunctional enzyme; can convert 3-dehydroquinate to 3-dehydroshkimate and then to shikimate; involved in the synthesis of aromatic amino acids and other metabolites; type I 3-DHQase; bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase 804396..805829 Chlamydophila abortus S26/3 3337262 YP_220093.1 CDS CAB695 NC_004552.2 805880 806674 D Similar to Chlamydophila caviae hypothetical protein cca00728 SWALL:Q822F5 (EMBL:AE016996) (263 aa) fasta scores: E(): 9.2e-84, 79.16% id in 264 aa, and to Chlamydia pneumoniae outer membrane protein cpn1034/cp0818/cpj1034 precursor SWALL:OMPY_CHLPN (SWALL:Q9Z6M5) (262 aa) fasta scores: E(): 1.4e-56, 55.72% id in 262 aa, and to SWALL:AAP99003 (EMBL:UNKNOWN ACCESSION) (262 aa) fasta scores: E(): 1.4e-56, 55.72% id in 262 aa; hypothetical protein 805880..806674 Chlamydophila abortus S26/3 3337601 YP_220094.1 CDS CAB696 NC_004552.2 806781 808127 D Similar to Chlamydophila caviae hypothetical protein cca00729 SWALL:Q822F4 (EMBL:AE016996) (451 aa) fasta scores: E(): 3.7e-152, 82.04% id in 451 aa, and to Chlamydia pneumoniae ct372 hypothetical protein cpn1033 or cpj1033 or cp0819 SWALL:Q9Z6M6 (EMBL:AE001683) (438 aa) fasta scores: E(): 2.2e-102, 58.57% id in 449 aa, and to Chlamydia trachomatis hypothetical protein Ct372 SWALL:O84377 (EMBL:AE001310) (442 aa) fasta scores: E(): 3.9e-73, 49.88% id in 437 aa; hypothetical protein 806781..808127 Chlamydophila abortus S26/3 3337602 YP_220095.1 CDS CAB697 NC_004552.2 808162 808749 D Similar to Chlamydophila caviae hypothetical protein cca00730 SWALL:Q822F3 (EMBL:AE016996) (195 aa) fasta scores: E(): 5.6e-79, 96.92% id in 195 aa, and to Chlamydia muridarum hypothetical protein Tc0652 SWALL:Q9PK21 (EMBL:AE002332) (195 aa) fasta scores: E(): 7.4e-75, 91.28% id in 195 aa, and to Chlamydia pneumoniae ct373 hypothetical protein cpn1032 or cpj1032 or cp0820 SWALL:Q9Z6M7 (EMBL:AE001683) (195 aa) fasta scores: E(): 2.7e-73, 89.17% id in 194 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 808162..808749 Chlamydophila abortus S26/3 3337603 YP_220096.1 CDS arcD NC_004552.2 808759 810219 D Similar to Pseudomonas aeruginosa arginine/ornithine antiporter ArcD or pa5170 SWALL:ARCD_PSEAE (SWALL:P18275) (482 aa) fasta scores: E(): 2.3e-72, 43.3% id in 478 aa, and to Chlamydophila caviae amino acid permease ArcD or cca00731 SWALL:Q822F2 (EMBL:AE016996) (486 aa) fasta scores: E(): 2.9e-164, 87.86% id in 486 aa, and to Chlamydia pneumoniae amino acid permease cp0821 SWALL:Q9K1X7 (EMBL:AE002240) (485 aa) fasta scores: E(): 1.7e-154, 80.61% id in 485 aa; amino acid permease 808759..810219 Chlamydophila abortus S26/3 3337256 YP_220097.1 CDS CAB699 NC_004552.2 810331 811371 D Similar to Chlamydophila caviae oxidoreductase, DadA family cca00732 SWALL:Q822F1 (EMBL:AE016996) (346 aa) fasta scores: E(): 9.8e-123, 89.56% id in 345 aa, and to Chlamydia pneumoniae predicted D-amino acid dehydrogenase cpn1030 or cpj1030 or cp0822 SWALL:Q9Z6M9 (EMBL:AE001683) (348 aa) fasta scores: E(): 1.7e-107, 75.86% id in 348 aa, and to Chlamydia muridarum oxidoreductase, DadA family tc0654 SWALL:Q9PK19 (EMBL:AE002334) (351 aa) fasta scores: E(): 3.6e-105, 74.85% id in 346 aa, and to Chlamydia trachomatis predicted D-amino acid dehydrogenase ct375 SWALL:O84380 (EMBL:AE001311) (352 aa) fasta scores: E(): 2.8e-103, 73.48% id in 347 aa; oxidoreductase 810331..811371 Chlamydophila abortus S26/3 3337604 YP_220098.1 CDS CAB700 NC_004552.2 811361 812185 R Similar to Chlamydophila caviae hypothetical protein cca00733 SWALL:Q822F0 (EMBL:AE016996) (274 aa) fasta scores: E(): 2.8e-93, 86.49% id in 274 aa, and to Chlamydia pneumoniae hypothetical protein Cp0823 SWALL:Q9K1X6 (EMBL:AE002240) (273 aa) fasta scores: E(): 8.6e-73, 68.13% id in 273 aa, and to Chlamydia pneumoniae hypothetical protein cpn1029 or cpj1029 SWALL:Q9Z6N0 (EMBL:AE001683) (279 aa) fasta scores: E(): 8.8e-73, 68.13% id in 273 aa; transmembrane protein complement(811361..812185) Chlamydophila abortus S26/3 3337605 YP_220099.1 CDS CAB701 NC_004552.2 812207 813199 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(812207..813199) Chlamydophila abortus S26/3 3337606 YP_220100.1 CDS CAB702 NC_004552.2 813545 813688 R Similar to Chlamydophila caviae hypothetical protein cca00735 SWALL:Q822E8 (EMBL:AE016996) (47 aa) fasta scores: E(): 3e-16, 87.23% id in 47 aa, and to Chlamydia pneumoniae late transcription unit A protein LtuA or cpn1026 or cp0826 or cpj1026 SWALL:LTUA_CHLPN (SWALL:Q9Z6N3) (47 aa) fasta scores: E(): 7.7e-12, 63.83% id in 47 aa, and to Chlamydia trachomatis late transcription unit A protein LtuA or ct377 SWALL:LTUA_CHLTR (SWALL:Q46403) (46 aa) fasta scores: E(): 9.1e-11, 60% id in 45 aa; late transcription unit A complement(813545..813688) Chlamydophila abortus S26/3 3337607 YP_220101.1 CDS pgi NC_004552.2 813787 815382 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(813787..815382) Chlamydophila abortus S26/3 3337661 YP_220102.1 CDS xerD NC_004552.2 815452 816351 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 815452..816351 Chlamydophila abortus S26/3 3337608 YP_220103.1 CDS CAB705 NC_004552.2 816348 816647 R Similar to Chlamydophila caviae hypothetical protein cca00738 SWALL:Q822E5 (EMBL:AE016996) (95 aa) fasta scores: E(): 7.2e-22, 66.31% id in 95 aa, and to Chlamydia pneumoniae hypothetical protein cpn1023 cpn1023 or cpj1023 or cp0829 SWALL:Q9Z6N6 (EMBL:AE001683) (99 aa) fasta scores: E(): 5.5e-14, 48% id in 100 aa. Note the differing translational start sites and the alternative translational start site at codon 5.; lipoprotein complement(816348..816647) Chlamydophila abortus S26/3 3337609 YP_220104.1 CDS CAB706 NC_004552.2 816999 818444 D Similar to Chlamydophila caviae hypothetical protein cca00739 SWALL:Q822E4 (EMBL:AE016996) (480 aa) fasta scores: E(): 1.3e-92, 67.28% id in 483 aa, and to Chlamydia trachomatis hypothetical protein Ct863 SWALL:O84871 (EMBL:AE001359) (482 aa) fasta scores: E(): 2.5e-51, 46.29% id in 499 aa, and to Chlamydia muridarum hypothetical protein Tc0253 SWALL:Q9PL55 (EMBL:AE002292) (490 aa) fasta scores: E(): 9.7e-48, 44.28% id in 499 aa. Note the high incidence of Serine residues in the predicted product of this CDS.Only significant full-length database matches are to Chlamydiaceae proteins.; serine-rich protein 816999..818444 Chlamydophila abortus S26/3 3337610 YP_220105.1 CDS CAB707 NC_004552.2 818444 818962 D Similar to Yersinia pestis low calcium response locus protein H LcrH or ypcd1.30c or y5048 or y0051 SWALL:LCRH_YERPE (SWALL:P21207) (168 aa) fasta scores: E(): 3e-05, 28.22% id in 124 aa, and to Chlamydophila caviae type III secretion chaperone cca00740 SWALL:Q822E3 (EMBL:AE016996) (172 aa) fasta scores: E(): 5.2e-61, 88.37% id in 172 aa, and to Chlamydia pneumoniae low calcium response protein H LcrH_2 or cpn1021 or cp0832 SWALL:Q9Z6N8 (EMBL:AE001682) (172 aa) fasta scores: E(): 5.8e-51, 75.43% id in 171 aa; low calcium response locus protein 818444..818962 Chlamydophila abortus S26/3 3337611 YP_220106.1 CDS CAB708 NC_004552.2 818981 820501 D Similar to Chlamydophila caviae hypothetical protein cca00741 SWALL:Q822E2 (EMBL:AE016996) (504 aa) fasta scores: E(): 3.7e-125, 66.73% id in 505 aa, and to Chlamydia pneumoniae ct861 hypothetical protein cpn1020 or cp0833 SWALL:Q9Z6N9 (EMBL:AE001682) (510 aa) fasta scores: E(): 4.2e-70, 40.77% id in 515 aa, and to Chlamydia pneumoniae ct861 hypothetical protein cpj1020 SWALL:Q9JS77 (EMBL:AP002548) (510 aa) fasta scores: E(): 1.3e-69, 40.58% id in 515 aa. Note the high incidence of Serine and Leucine residues in the predicted product of this CDS.; hypothetical protein 818981..820501 Chlamydophila abortus S26/3 3337727 YP_220107.1 CDS CAB709 NC_004552.2 820521 821999 D Similar to Chlamydophila caviae hypothetical protein cca00742 SWALL:Q822E1 (EMBL:AE016996) (494 aa) fasta scores: E(): 2e-125, 76.76% id in 495 aa, and to Chlamydia pneumoniae ct860 hypothetical protein cpn1019 or cpj1019 or cp0834 SWALL:Q9Z6P0 (EMBL:AE001682) (497 aa) fasta scores: E(): 1.9e-66, 46.72% id in 488 aa, and to Chlamydia muridarum hypothetical protein Tc0250 SWALL:Q9PL58 (EMBL:AE002292) (497 aa) fasta scores: E(): 3.6e-56, 41.36% id in 498 aa. Note the high incidence of Serine residues in the predicted product of this CDS and the predicted DNA-binding motif between amino acid residues 358-379. Only significant full-length database matches are to Chlamydiaceae proteins.; serine-rich protein 820521..821999 Chlamydophila abortus S26/3 3337728 YP_220108.1 CDS CAB710 NC_004552.2 822007 822729 R Similar to Chlamydophila caviae hypothetical protein Cca00743 SWALL:Q822E0 (EMBL:AE016996) (240 aa) fasta scores: E(): 1.3e-76, 83.18% id in 220 aa, and to Chlamydia pneumoniae hypothetical protein Cp0835 SWALL:Q9K1X3 (EMBL:AE002242) (219 aa) fasta scores: E(): 3.8e-56, 62.5% id in 216 aa, and to Chlamydia pneumoniae hypothetical protein cpn1018 or cpj1018 SWALL:Q9Z6P1 (EMBL:AE001682) (244 aa) fasta scores: E(): 4.1e-56, 62.5% id in 216 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(822007..822729) Chlamydophila abortus S26/3 3337729 YP_220109.1 CDS ispH NC_004552.2 822692 823621 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(822692..823621) Chlamydophila abortus S26/3 3337435 YP_220110.1 CDS CAB712 NC_004552.2 823731 825542 R Similar to Chlamydophila caviae hypothetical protein cca00745 SWALL:Q822D8 (EMBL:AE016996) (593 aa) fasta scores: E(): 4.5e-195, 77.9% id in 593 aa, and to Chlamydia pneumoniae protein cpn1016/cp0837/cpj1016 SWALL:YA16_CHLPN (SWALL:Q9Z6P3) (619 aa) fasta scores: E(): 3.7e-135, 55.44% id in 606 aa, and to Chlamydia muridarum hypothetical protein Tc0248 SWALL:Y248_CHLMU (SWALL:Q9PL60) (601 aa) fasta scores: E(): 3.3e-126, 51.82% id in 604 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(823731..825542) Chlamydophila abortus S26/3 3337730 YP_220111.1 CDS CAB713 NC_004552.2 825655 826917 R Similar to Vibrio cholerae Na+/H+ antiporter NhaD or vca1015 SWALL:Q9EYG4 (EMBL:AF331042) (477 aa) fasta scores: E(): 1.7e-07, 26.74% id in 445 aa, and to Chlamydophila caviae Na+/H+ antiporter, cca00746 SWALL:Q822D7 (EMBL:AE016996) (420 aa) fasta scores: E(): 2.8e-167, 96.42% id in 420 aa, and to Chlamydia pneumoniae ct857 hypothetical protein cpn1015 or cpj1015 SWALL:Q9Z6P4 (EMBL:AE001682) (420 aa) fasta scores: E(): 3.3e-150, 85.68% id in 419 aa; Na+/H+ antiporter complement(825655..826917) Chlamydophila abortus S26/3 3337731 YP_220112.1 CDS CAB714 NC_004552.2 827194 828894 D Similar to Synechocystis sp. low affinity sulfate transporter sll0834 SWALL:Q55415 (EMBL:D64003) (564 aa) fasta scores: E(): 6.4e-37, 28.31% id in 565 aa, and to Chlamydophila caviae sulfate transporter family protein cca00747 SWALL:Q822D6 (EMBL:AE016996) (566 aa) fasta scores: E(): 1.3e-206, 95.4% id in 566 aa, and to Chlamydia trachomatis sulfate transporter YchM or ct856 SWALL:O84864 (EMBL:AE001358) (567 aa) fasta scores: E(): 2.1e-188, 85.86% id in 566 aa; sulfate transporter 827194..828894 Chlamydophila abortus S26/3 3337732 YP_220113.1 CDS fumC NC_004552.2 828891 830273 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(828891..830273) Chlamydophila abortus S26/3 3338050 YP_220114.1 CDS CAB716 NC_004552.2 830325 832157 D Similar to Fusobacterium nucleatum subsp. vincentii ATCC 49256 hydroxymethylpyrimidine transport system permease fnv1192 SWALL:EAA24212 (EMBL:AABF01000046) (257 aa) fasta scores: E(): 1.2e-15, 25.55% id in 227 aa, and to Chlamydophila caviae ABC transporter, permease, cca00749 SWALL:Q822D4 (EMBL:AE016996) (610 aa) fasta scores: E(): 1.3e-199, 84.59% id in 610 aa, and to Chlamydia pneumoniae ABC transporter permease YzeB or cpn1012 or cp0841 SWALL:Q9Z6P7 (EMBL:AE001681) (591 aa) fasta scores: E(): 7.2e-146, 64.1% id in 585 aa. CDS overlaps approximately 90 nt with the adjacent CDS; ABC transporter permease component 830325..832157 Chlamydophila abortus S26/3 3337733 YP_220115.1 CDS CAB717 NC_004552.2 832066 832716 R Similar to Bradyrhizobium japonicum Bll5379 protein SWALL:Q89JA5 (EMBL:AP005954) (297 aa) fasta scores: E(): 2.7e-07, 33.33% id in 198 aa, and to Micrococcus luteus adenylate kinase Adk SWALL:KAD_MICLU (SWALL:P33107) (205 aa) fasta scores: E(): 5e-07, 30.28% id in 208 aa, and to Brachydanio rerio similar to riken cDNA 0610011d08 gene SWALL:Q7ZWE9 (EMBL:BC049446) (219 aa) fasta scores: E(): 2.3e-05, 27.72% id in 202 aa. CDS overlaps approximately 90 nt with adjacent CDS; hypothetical protein complement(832066..832716) Chlamydophila abortus S26/3 3337430 YP_220116.1 CDS CAB718 NC_004552.2 832807 833415 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YhgN or b3434 or z4798 or ecs4279 or sf3457 or s4306 SWALL:YHGN_ECOLI (SWALL:P46851) (197 aa) fasta scores: E(): 1.1e-07, 25.62% id in 199 aa, and to Chlamydophila caviae hypothetical protein cca00750 SWALL:Q822D3 (EMBL:AE016996) (202 aa) fasta scores: E(): 2.6e-66, 87.62% id in 202 aa, and to Chlamydia muridarum hypothetical protein Tc0242 SWALL:Q9PL66 (EMBL:AE002291) (199 aa) fasta scores: E(): 1.8e-33, 48.51% id in 202 aa; transmembrane protein 832807..833415 Chlamydophila abortus S26/3 3337344 YP_220117.1 CDS CAB719 NC_004552.2 833428 834036 D Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YhgN or b3434 or z4798 or ecs4279 or sf3457 or s4306 SWALL:YHGN_ECOLI (SWALL:P46851) (197 aa) fasta scores: E(): 2.6e-18, 32.65% id in 196 aa, and to Chlamydophila caviae hypothetical protein cca00751 SWALL:Q822D2 (EMBL:AE016996) (202 aa) fasta scores: E(): 6.1e-70, 91.58% id in 202 aa, and to Chlamydia pneumoniae hypothetical protein cpn1010/cp0843/cpj1010 SWALL:YA10_CHLPN (SWALL:Q9Z6P9) (202 aa) fasta scores: E(): 1.1e-57, 76.61% id in 201 aa; transmembrane protein 833428..834036 Chlamydophila abortus S26/3 3337444 YP_220118.1 CDS CAB720 NC_004552.2 834046 834918 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase 834046..834918 Chlamydophila abortus S26/3 3337445 YP_220119.1 CDS CAB721 NC_004552.2 834875 836149 R Similar to Chlamydophila caviae hypothetical protein CCA00753 SWALL:Q822D0 (EMBL:AE016996) (425 aa) fasta scores: E(): 9e-110, 77.88% id in 425 aa, and to Chlamydia pneumoniae CT850 hypothetical protein CPN1008 or CPJ1008 SWALL:Q9Z6Q1 (EMBL:AE001681) (432 aa) fasta scores: E(): 1.7e-47, 42.43% id in 436 aa; hypothetical protein complement(834875..836149) Chlamydophila abortus S26/3 3337446 YP_220120.1 CDS CAB722 NC_004552.2 836162 836347 R Similar to Chlamydophila caviae hypothetical protein CCA00754 SWALL:Q822C9 (EMBL:AE016996) (61 aa) fasta scores: E(): 2.5e-22, 93.44% id in 61 aa, and to Chlamydia pneumoniae hypothetical protein CP0846 SWALL:Q9K1W9 (EMBL:AE002244) (61 aa) fasta scores: E(): 1.4e-16, 75.41% id in 61 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(836162..836347) Chlamydophila abortus S26/3 3337447 YP_220121.1 CDS CAB723 NC_004552.2 836615 837118 D Similar to Chlamydophila caviae hypothetical protein CCA00755 SWALL:Q822C8 (EMBL:AE016996) (167 aa) fasta scores: E(): 1.5e-50, 93.41% id in 167 aa, and to Chlamydia pneumoniae CT849 hypothetical protein CPN1006 or CPJ1006 or CP0847 SWALL:Q9Z6Q3 (EMBL:AE001681) (161 aa) fasta scores: E(): 6.3e-41, 91.42% id in 140 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 836615..837118 Chlamydophila abortus S26/3 3337431 YP_220122.1 CDS CAB724 NC_004552.2 837170 837688 D Similar to Chlamydophila caviae hypothetical protein CCA00756 SWALL:Q822C7 (EMBL:AE016996) (172 aa) fasta scores: E(): 3.7e-55, 95.34% id in 172 aa, and to Chlamydia pneumoniae CTt848 hypothetical protein CPN1005 or CPJ1005 or CP0848 SWALL:Q9Z6Q4 (EMBL:AE001681) (173 aa) fasta scores: E(): 3.6e-47, 82.18% id in 174 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 837170..837688 Chlamydophila abortus S26/3 3337432 YP_220123.1 CDS CAB725 NC_004552.2 837708 838238 D Similar to Chlamydophila caviae hypothetical protein CCA00757 SWALL:Q822C6 (EMBL:AE016996) (176 aa) fasta scores: E(): 7.1e-50, 88.06% id in 176 aa, and to Chlamydia pneumoniae CT847 hypothetical protein CPN1004 or CPJ1004 or CP0849 SWALL:Q9Z6Q5 (EMBL:AE001681) (173 aa) fasta scores: E(): 5.7e-38, 68.18% id in 176 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 837708..838238 Chlamydophila abortus S26/3 3337433 YP_220124.1 CDS CAB726 NC_004552.2 838319 839026 D Similar to Chlamydophila caviae hypothetical protein CCA00758 SWALL:Q822C5 (EMBL:AE016996) (235 aa) fasta scores: E(): 1e-86, 87.23% id in 235 aa, and to Chlamydia pneumoniae CT846 hypothetical protein CPN1003 or CPJ1003 or CP0850 SWALL:Q9Z6Q6 (EMBL:AE001681) (235 aa) fasta scores: E(): 2.9e-55, 55.74% id in 235 aa; hypothetical protein 838319..839026 Chlamydophila abortus S26/3 3337426 YP_220125.1 CDS CAB727 NC_004552.2 839023 839253 R Similar to Chlamydophila caviae hypothetical protein CCA00759 SWALL:Q822C4 (EMBL:AE016996) (76 aa) fasta scores: E(): 9.6e-25, 89.33% id in 75 aa, and to Chlamydia pneumoniae CT845 hypothetical protein CPN1002 or CPJ1002 or CP0851 SWALL:Q9Z6Q7 (EMBL:AE001681) (76 aa) fasta scores: E(): 1.3e-17, 70.66% id in 75 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(839023..839253) Chlamydophila abortus S26/3 3337740 YP_220126.1 CDS CAB728 NC_004552.2 839243 839716 R Similar to Streptococcus pneumoniae cytidine/deoxycytidylate deaminase SP0020 SWALL:Q97TC0 (EMBL:AE007319) (155 aa) fasta scores: E(): 4.7e-26, 46.66% id in 150 aa, and to Thermoanaerobacter tengcongensis cytosine/adenosine deaminases TTE0037 SWALL:Q8RDI8 (EMBL:AE012978) (148 aa) fasta scores: E(): 2.3e-25, 50.69% id in 144 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein YfhC or B2559 or SF2606 or S2778 SWALL:YFHC_ECOLI (SWALL:P30134) (178 aa) fasta scores: E(): 5.2e-22, 43.04% id in 151 aa; cytidine/deoxycytidylate deaminase complement(839243..839716) Chlamydophila abortus S26/3 3337848 YP_220127.1 CDS rpsO NC_004552.2 839957 840226 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 839957..840226 Chlamydophila abortus S26/3 3338116 YP_220128.1 CDS pnpA NC_004552.2 840274 842358 D Similar to Bacillus subtilis polyribonucleotide nucleotidyltransferase PnpA or ComR SWALL:PNP_BACSU (SWALL:P50849) (704 aa) fasta scores: E(): 6.3e-110, 46.99% id in 683 aa, and to Escherichia coli polyribonucleotide nucleotidyltransferase Pnp or B3164 SWALL:PNP_ECOLI (SWALL:P05055) (711 aa) fasta scores: E(): 2.7e-104, 45.11% id in 676 aa; polynucleotide phosphorylase 840274..842358 Chlamydophila abortus S26/3 3338065 YP_220129.1 CDS CAB731 NC_004552.2 842460 845201 R Similar in its C-terminal region to Neisseria meningitidis cell division protein FtsH NMB0798 SWALL:Q9K027 (EMBL:AE002433) (655 aa) fasta scores: E(): 5.8e-100, 51.55% id in 613 aa, and to Escherichia coli, and Shigella flexneri cell division protein FtsH or HflB or MrsC or TolZ or B3178 or SF3218 or S3436 SWALL:FTSH_ECOLI (SWALL:P28691) (644 aa) fasta scores: E(): 4.2e-97, 52.38% id in 565 aa; cell division protein complement(842460..845201) Chlamydophila abortus S26/3 3337849 YP_220130.1 CDS CAB732 NC_004552.2 845375 846328 R Similar to Streptococcus agalactiae MesJ/Ycf62 family protein SAG0014 SWALL:Q8E2H4 (EMBL:AE014191) (424 aa) fasta scores: E(): 1.8e-16, 32.75% id in 232 aa, and to Lactobacillus plantarum cell cycle protein MesJ or LP_0545 SWALL:Q88Z33 (EMBL:AL935253) (448 aa) fasta scores: E(): 1.1e-15, 27.79% id in 295 aa; hypothetical protein complement(845375..846328) Chlamydophila abortus S26/3 3337850 YP_220131.1 CDS CAB733 NC_004552.2 846442 847515 D Similar to Chlamydophila caviae YjgP/YjgQ family protein CCA00765 SWALL:Q822B8 (EMBL:AE016996) (357 aa) fasta scores: E(): 8.2e-128, 92.15% id in 357 aa, and to Chlamydia pneumoniae CT839 hypothetical protein CPN0996 or CPJ0996 or CP0859 SWALL:Q9Z6R3 (EMBL:AE001680) (357 aa) fasta scores: E(): 1.7e-111, 79.27% id in 357 aa; hypothetical protein 846442..847515 Chlamydophila abortus S26/3 3337851 YP_220132.1 CDS CAB734 NC_004552.2 847519 848622 D Similar to Chlamydophila caviae YjgP/YjgQ family protein CCA00766 SWALL:Q822B7 (EMBL:AE016996) (367 aa) fasta scores: E(): 1.3e-131, 93.18% id in 367 aa, and to Chlamydia pneumoniae CT838 hypothetical protein CPN0995 or CPJ0995 or CP0860 SWALL:Q9Z6R4 (EMBL:AE001680) (366 aa) fasta scores: E(): 5.4e-110, 76.83% id in 367 aa; hypothetical protein 847519..848622 Chlamydophila abortus S26/3 3337852 YP_220133.1 CDS CAB735 NC_004552.2 848609 850639 R Similar to Chlamydophila caviae hypothetical protein CCA00767 SWALL:Q822B6 (EMBL:AE016996) (675 aa) fasta scores: E(): 4.8e-215, 84.32% id in 676 aa, and to Chlamydia pneumoniae CT837 hypothetical protein CPN0994 or CPJ0994 or CP0861 SWALL:Q9Z6R5 (EMBL:AE001680) (681 aa) fasta scores: E(): 5e-148, 59.11% id in 680 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(848609..850639) Chlamydophila abortus S26/3 3337853 YP_220134.1 CDS pheS NC_004552.2 850946 851971 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(850946..851971) Chlamydophila abortus S26/3 3337664 YP_220135.1 CDS rplT NC_004552.2 851984 852346 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(851984..852346) Chlamydophila abortus S26/3 3337492 YP_220136.1 CDS rpmI NC_004552.2 852368 852562 R Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L35 SWALL:RL35_ECOLI (SWALL:P07085) (64 aa) fasta scores: E(): 3.7e-05, 41.07% id in 56 aa, and to Clostridium acetobutylicum 50s ribosomal protein l35 RpmI or CAC2360 SWALL:RL35_CLOAB (SWALL:Q97GK6) (65 aa) fasta scores: E(): 5.5e-07, 46.77% id in 62 aa; 50S ribosomal protein L35 complement(852368..852562) Chlamydophila abortus S26/3 3338098 YP_220137.1 CDS infC NC_004552.2 852540 853082 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(852540..853082) Chlamydophila abortus S26/3 3337977 YP_220138.1 CDS nusB NC_004552.2 853495 853989 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 853495..853989 Chlamydophila abortus S26/3 3337854 YP_220139.1 CDS murB NC_004552.2 854027 854917 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 854027..854917 Chlamydophila abortus S26/3 3337855 YP_220140.1 CDS trmB NC_004552.2 855598 856272 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(855598..856272) Chlamydophila abortus S26/3 3337857 YP_220141.1 CDS CAB744 NC_004552.2 856449 857498 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta complement(856449..857498) Chlamydophila abortus S26/3 3337858 YP_220142.1 CDS CAB745 NC_004552.2 857513 860650 R catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(857513..860650) Chlamydophila abortus S26/3 3337859 YP_220143.1 CDS CAB746 NC_004552.2 861026 861832 D Similar to Fusobacterium nucleatum CDP-diacylglycerol--serine O-phosphatidyltransferase FN0991 SWALL:Q8REU8 (EMBL:AE010606) (261 aa) fasta scores: E(): 4.1e-13, 31.27% id in 259 aa, and to Bacteroides thetaiotaomicron CDPp-diacylglycerol--serine O-phosphatidyltransferase BT2232 SWALL:Q8A5K7 (EMBL:AE016935) (235 aa) fasta scores: E(): 5.8e-10, 28.01% id in 257 aa; phospholipid biosynthesis-related membrane protein 861026..861832 Chlamydophila abortus S26/3 3337860 YP_220144.1 CDS CAB747 NC_004552.2 861829 863067 D Similar to Zymomonas mobilis DNA recombination protein RmuC homolog SWALL:RMUC_ZYMMO (SWALL:Q9REQ3) (448 aa) fasta scores: E(): 1e-18, 30.3% id in 363 aa, and to Haemophilus influenzae DNA recombination protein homolog RmuC or HI0500 SWALL:RMUC_HAEIN (SWALL:P44733) (450 aa) fasta scores: E(): 1.3e-10, 26.92% id in 364 aa; DNA recombination protein 861829..863067 Chlamydophila abortus S26/3 3337861 YP_220145.1 CDS CAB748 NC_004552.2 863071 865995 R Similar to Deinococcus radiodurans metalloprotease, DR0617 SWALL:Q9RWP9 (EMBL:AE001919) (996 aa) fasta scores: E(): 9.6e-91, 32.88% id in 970 aa, and to Clostridium tetani zn-dependent peptidase, insulinase CTC00810 SWALL:Q897D0 (EMBL:AE015938) (973 aa) fasta scores: E(): 6.6e-80, 29.96% id in 988 aa; metalloprotease complement(863071..865995) Chlamydophila abortus S26/3 3337862 YP_220146.1 CDS CAB749 NC_004552.2 866145 867509 D Similar to Bacillus halodurans hypothetical protein BH3875 SWALL:Q9K657 (EMBL:AP001520) (458 aa) fasta scores: E(): 6e-48, 35.09% id in 453 aa, and to Oceanobacillus iheyensis hypothetical conserved protein OB1111 SWALL:Q8CUJ6 (EMBL:AP004596) (453 aa) fasta scores: E(): 5.9e-46, 33.11% id in 447 aa; peptidase 866145..867509 Chlamydophila abortus S26/3 3337863 YP_220147.1 CDS CAB750 NC_004552.2 867568 869034 R Similar to Escherichia coli, and Escherichia coli O157:H7 protease Do precursor DegP or HtrA or Ptd or B0161 or Z0173 or ECS0165 SWALL:DEGP_ECOLI (SWALL:P09376) (474 aa) fasta scores: E(): 3.9e-48, 37.65% id in 494 aa, and to Chlorobium tepidum serine protease CT1447 SWALL:Q8KCH4 (EMBL:AE012902) (505 aa) fasta scores: E(): 3.3e-60, 41.44% id in 444 aa; heat shock-related exported protease complement(867568..869034) Chlamydophila abortus S26/3 3337864 YP_220148.1 CDS sucD NC_004552.2 869370 870245 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(869370..870245) Chlamydophila abortus S26/3 3338213 YP_220149.1 CDS sucC NC_004552.2 870260 871420 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(870260..871420) Chlamydophila abortus S26/3 3338212 YP_220150.1 CDS CAB753 NC_004552.2 871491 872351 D Similar to Thermoanaerobacter tengcongensis signal recognition particle GTPase FtsY or TTE1464 SWALL:Q8R9W8 (EMBL:AE013104) (295 aa) fasta scores: E(): 1.3e-33, 37.81% id in 275 aa, and to The C-terminal domain of Escherichia coli cell division protein FtsY or B3464, similarity limited to the NG-domain where the GTPase activity is located SWALL:FTSY_ECOLI (SWALL:P10121) (497 aa) fasta scores: E(): 6.9e-33, 38.73% id in 284 aa; cell division protein 871491..872351 Chlamydophila abortus S26/3 3337865 YP_220151.1 CDS CAB754 NC_004552.2 872366 873082 R Similar to Yersinia pestis membrane protein YPO1163 or Y3018 SWALL:Q8ZGW1 (EMBL:AJ414146) (236 aa) fasta scores: E(): 3.4e-16, 33.63% id in 223 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein YbhL or B0786 or C0868 SWALL:YBHL_ECOLI (SWALL:P75768) (234 aa) fasta scores: E(): 3.7e-14, 32.43% id in 222 aa; hypothetical protein complement(872366..873082) Chlamydophila abortus S26/3 3337866 YP_220152.1 CDS CAB755 NC_004552.2 873137 874324 R Similar to Vibrio vulnificus tyrosine-specific transport protein VVv12293 SWALL:Q8DAB5 (EMBL:AE016804) (401 aa) fasta scores: E(): 1.1e-32, 32.99% id in 394 aa, and to Escherichia coli, and Shigella flexneri tyrosine-specific transport protein TyrP or B1907 or SF1953 or S2046 SWALL:TYRP_ECOLI (SWALL:P18199) (403 aa) fasta scores: E(): 1.7e-30, 30.92% id in 401 aa; tyrosine-specific transport protein complement(873137..874324) Chlamydophila abortus S26/3 3337867 YP_220153.1 CDS glmS NC_004552.2 874394 876223 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(874394..876223) Chlamydophila abortus S26/3 3338059 YP_220154.1 CDS glmM NC_004552.2 876232 877608 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(876232..877608) Chlamydophila abortus S26/3 3337868 YP_220155.1 CDS CAB758 NC_004552.2 878219 879505 D Similar to Neisseria meningitidis poly(A) polymerase PcnB or NMA1053 SWALL:Q9JV08 (EMBL:AL162755) (453 aa) fasta scores: E(): 9.7e-34, 30.8% id in 409 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 poly(A) polymerase PcnB or B0143 or C0176 or Z0154 or ECS0147 SWALL:PCNB_ECOLI (SWALL:P13685) (472 aa) fasta scores: E(): 2.3e-20, 33.33% id in 423 aa; poly(A) polymerase 878219..879505 Chlamydophila abortus S26/3 3337869 YP_220156.1 CDS lpxB NC_004552.2 879519 881402 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate; lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 879519..881402 Chlamydophila abortus S26/3 3337870 YP_220157.1 CDS CAB760 NC_004552.2 881695 882270 R Similar to Chlamydia pneumoniae hypothetical protein cpj1027 or cp0825 SWALL:Q9JS06 (EMBL:AE002240) (526 aa) fasta scores: E(): 1.9, 27.32% id in 172 aa. CDS contains coiled coil from residues 110-131. Possible pseudogene.; TMH family membrane protein complement(881695..882270) Chlamydophila abortus S26/3 3337871 YP_220158.1 CDS CAB761 NC_004552.2 882295 883365 R Similar to Chlamydophila caviae hypothetical protein cca00794 SWALL:Q821Z1 (EMBL:AE016997) (373 aa) fasta scores: E(): 8.8e-36, 43.05% id in 360 aa. Note the differing N-termini. CDS contains coiled coil from residues 153-178.; TMH family membrane protein complement(882295..883365) Chlamydophila abortus S26/3 3337872 YP_220159.1 CDS CAB764 NC_004552.2 884700 886109 R Similar to Chlamydophila caviae hypothetical protein cca00797 SWALL:Q821Y8 (EMBL:AE016997) (274 aa) fasta scores: E(): 7.6e-16, 37.18% id in 277 aa. Note the C-terminal extension on the product of this CDS compared to that of C. caviae. Also note the high incidence of Glu, Ala and Val residues and the coiled coil regions between residues 112-156, 182-234, 250-315, 325-363, 384-426 and 173-488.; TMH family membrane protein complement(884700..886109) Chlamydophila abortus S26/3 3337303 YP_220160.1 CDS CAB766 NC_004552.2 886492 887265 R Note the high incidence of Glu, Ala, Ser and Val residues and the presence of coiled coil region between residues 103-149. No significant database matches.; TMH family membrane protein complement(886492..887265) Chlamydophila abortus S26/3 3337304 YP_220161.1 CDS CAB771 NC_004552.2 890185 891246 R Similar to Chlamydophila caviae hypothetical protein cca00800 SWALL:Q821Y5 (EMBL:AE016997) (355 aa) fasta scores: E(): 4.1e-50, 56.42% id in 358 aa. CDS contains coiled coil region from residues 218-239.; TMH family membrane protein complement(890185..891246) Chlamydophila abortus S26/3 3337306 YP_220162.1 CDS CAB772 NC_004552.2 891524 892951 R No significant database matches. Note the high incidence of Glu and Ser residues within the product of this CDS; TMH family membrane protein complement(891524..892951) Chlamydophila abortus S26/3 3337307 YP_220163.1 CDS CAB773 NC_004552.2 893505 894779 D Similar to Chlamydia pneumoniae hypothetical protein CPJ0964 SWALL:Q9JS83 (EMBL:AP002548) (486 aa) fasta scores: E(): 0.00031, 23.11% id in 463 aa; hypothetical protein 893505..894779 Chlamydophila abortus S26/3 3337308 YP_220164.1 CDS CAB774 NC_004552.2 894981 897803 D No significant database matches.Note the high incidence of Glu Thr and Ser residues within the product of this CDS; hypothetical protein 894981..897803 Chlamydophila abortus S26/3 3337309 YP_220165.1 CDS CAB775 NC_004552.2 898177 899478 D Similar to Chlamydophila caviae hypothetical protein CCA00805 SWALL:Q821Y0 (EMBL:AE016997) (434 aa) fasta scores: E(): 1.3e-103, 60.46% id in 435 aa, and to Chlamydia pneumoniae hypothetical protein CPN0964 or CP0896 SWALL:Q9Z6U4 (EMBL:AE001676) (486 aa) fasta scores: E(): 2.1e-09, 30.87% id in 460 aa; hypothetical protein 898177..899478 Chlamydophila abortus S26/3 3337310 YP_220166.1 CDS pmp18D NC_004552.2 899562 904163 R Similar to Chlamydophila caviae polymorphic outer membrane protein D family protein/autotransporter CCA00806 SWALL:Q821X9 (EMBL:AE016997) (1537 aa) fasta scores: E(): 0, 73.47% id in 1542 aa, and to Chlamydia pneumoniae probable outer membrane protein precursor Pmp21 or CPN0963 or CP0897 SWALL:PM21_CHLPN (SWALL:Q9Z6U5) (1609 aa) fasta scores: E(): 6.2e-117, 42.64% id in 1646 aa, and to Chlamydia trachomatis cytolysin Ctc SWALL:Q93QE8 (EMBL:AF268092) (1530 aa) fasta scores: E(): 2.4e-107, 36.27% id in 1599 aa; hypothetical protein complement(899562..904163) Chlamydophila abortus S26/3 3337674 YP_220167.1 CDS CAB777 NC_004552.2 904268 905218 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(904268..905218) Chlamydophila abortus S26/3 3337311 YP_220168.1 CDS rpmF NC_004552.2 905234 905416 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(905234..905416) Chlamydophila abortus S26/3 3338096 YP_220169.1 CDS CAB779 NC_004552.2 905429 905890 R Similar to Chlamydophila caviae hypothetical protein CCA00809 SWALL:Q821X6 (EMBL:AE016997) (153 aa) fasta scores: E(): 3.1e-53, 85.62% id in 153 aa, and to Chlamydia muridarum hypothetical protein TC0194 SWALL:Q9PLB3 (EMBL:AE002286) (146 aa) fasta scores: E(): 2.6e-23, 52.23% id in 134 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(905429..905890) Chlamydophila abortus S26/3 3337312 YP_220170.1 CDS CAB780 NC_004552.2 906201 907733 D Similar to Xylella fastidiosa ribonuclease G CafA or PD0416 SWALL:Q87EA2 (EMBL:AE012554) (497 aa) fasta scores: E(): 6.7e-58, 39.61% id in 472 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribonuclease G CafA or Rng or B3247 or C4001 or Z4605 or ECS4119 or SF3285 or S3502 SWALL:RNG_ECOLI (SWALL:P25537) (488 aa) fasta scores: E(): 7.8e-46, 35.25% id in 485 aa; ribonuclease 906201..907733 Chlamydophila abortus S26/3 3337313 YP_220171.1 CDS CAB781 NC_004552.2 907736 908737 D Similar to Chlamydia trachomatis glycerol-3-P acyltransferase PlsB or CT807 SWALL:O84813 (EMBL:AE001353) (331 aa) fasta scores: E(): 1e-95, 67.97% id in 331 aa, and to a whole list of eukaryotic database entries, e.g. Cucumis sativus glycerol-3-phosphate acyltransferase, chloroplast precursor SWALL:PLSB_CUCSA (SWALL:Q39639) (470 aa) fasta scores: E(): 2e-42, 39.74% id in 317 aa; glycerol-3-P acyltransferase 907736..908737 Chlamydophila abortus S26/3 3337314 YP_220172.1 CDS CAB782 NC_004552.2 908740 911550 D Similar to Vibrio parahaemolyticus peptidase, insulinase VP2206 SWALL:Q87MM5 (EMBL:AP005080) (925 aa) fasta scores: E(): 3.3e-48, 24.7% id in 927 aa, and to Shewanella oneidensis peptidase, M16 family SO3083 SWALL:Q8ECQ2 (EMBL:AE015745) (929 aa) fasta scores: E(): 1.7e-41, 23.1% id in 896 aa; exported peptidase 908740..911550 Chlamydophila abortus S26/3 3337315 YP_220173.1 CDS CAB783 NC_004552.2 911555 912907 R Similar to Xylella fastidiosa hypothetical protein XF0042 SWALL:Q9PHA2 (EMBL:AE003858) (420 aa) fasta scores: E(): 1.5e-35, 29.35% id in 436 aa, and to Nitrosomonas europaea hypothetical protein NE1228 SWALL:Q82V73 (EMBL:BX321860) (418 aa) fasta scores: E(): 5.5e-32, 27.84% id in 431 aa; hypothetical protein complement(911555..912907) Chlamydophila abortus S26/3 3337316 YP_220174.1 CDS CAB784 NC_004552.2 913307 914182 R catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(913307..914182) Chlamydophila abortus S26/3 3337317 YP_220175.1 CDS rplI NC_004552.2 914227 914745 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(914227..914745) Chlamydophila abortus S26/3 3337481 YP_220176.1 CDS rpsR NC_004552.2 914766 915029 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(914766..915029) Chlamydophila abortus S26/3 3338119 YP_220177.1 CDS rpsF NC_004552.2 915047 915385 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(915047..915385) Chlamydophila abortus S26/3 3338108 YP_220178.1 CDS pth NC_004552.2 915463 916014 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(915463..916014) Chlamydophila abortus S26/3 3338070 YP_220179.1 CDS rplY NC_004552.2 916023 916580 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(916023..916580) Chlamydophila abortus S26/3 3337497 YP_220180.1 CDS glgA NC_004552.2 917069 918496 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 917069..918496 Chlamydophila abortus S26/3 3337318 YP_220181.1 CDS CAB791 NC_004552.2 918478 919092 R Similar to Oceanobacillus iheyensis phosphatidylglycerophosphate synthase PgsA or OB1622 SWALL:Q8EQR9 (EMBL:AP004598) (192 aa) fasta scores: E(): 2.7e-17, 34.82% id in 201 aa, and to Bacillus subtilis CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA SWALL:PGSA_BACSU (SWALL:P46322) (193 aa) fasta scores: E(): 4.8e-12, 31.72% id in 186 aa; phosphatidylglycerophosphate synthase complement(918478..919092) Chlamydophila abortus S26/3 3337319 YP_220182.1 CDS glyQ NC_004552.2 919393 922410 D Similar to Anabaena sp. glycyl-tRNA synthetase alpha chain GlyQ or ALL1985 SWALL:SYGA_ANASP (SWALL:Q8YVJ2) (294 aa) fasta scores: E(): 3.6e-66, 56.74% id in 289 aa, and to Tropheryma whipplei glycyl-tRNA synthetase GlyQS or TW262 SWALL:Q83I31 (EMBL:BX251410) (1024 aa) fasta scores: E(): 2.8e-77, 29.35% id in 1039 aa; glycyl-tRNA synthetase alpha chain 919393..922410 Chlamydophila abortus S26/3 3337736 YP_220183.1 CDS CAB793 NC_004552.2 922479 922958 R Similar to Chlamydophila caviae hypothetical protein CCA00824 SWALL:Q821W1 (EMBL:AE016997) (148 aa) fasta scores: E(): 2.6e-27, 54.36% id in 149 aa, and to Chlamydia muridarum hypothetical protein TC0177 SWALL:Q9PLC7 (EMBL:AE002285) (164 aa) fasta scores: E(): 3e-05, 30.43% id in 161 aa; hypothetical protein complement(922479..922958) Chlamydophila abortus S26/3 3337320 YP_220184.1 CDS CAB794 NC_004552.2 923044 923559 R Similar to Chlamydophila caviae hypothetical protein CCA00825 SWALL:Q821W0 (EMBL:AE016997) (171 aa) fasta scores: E(): 7.2e-46, 73.68% id in 171 aa, and to Chlamydia muridarum hypothetical protein TC0177 SWALL:Q9PLC7 (EMBL:AE002285) (164 aa) fasta scores: E(): 3.1e-14, 38.32% id in 167 aa; hypothetical protein complement(923044..923559) Chlamydophila abortus S26/3 3337321 YP_220185.1 CDS CAB795 NC_004552.2 923761 924273 R Similar to Chlamydophila caviae hypothetical protein CCA00826 SWALL:Q821V9 (EMBL:AE016997) (169 aa) fasta scores: E(): 2.6e-44, 65.06% id in 166 aa, and to Chlamydia pneumoniae hypothetical protein CPN0944 or CPJ0944 or CP0915 SWALL:Q9Z6W2 (EMBL:AE001674) (162 aa) fasta scores: E(): 2.8e-09, 29.69% id in 165 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(923761..924273) Chlamydophila abortus S26/3 3337322 YP_220186.1 CDS CAB796 NC_004552.2 924419 924694 R Similar to Chlamydophila caviae hypothetical protein CCA00827 SWALL:Q821V8 (EMBL:AE016997) (88 aa) fasta scores: E(): 1.1e-25, 80.68% id in 88 aa, and to Chlamydia pneumoniae CT794.1 hypothetical protein CPN0943 or CPJ0943 or CP0917 SWALL:Q9Z6W3 (EMBL:AE001674) (87 aa) fasta scores: E(): 1.9e-11, 45.45% id in 88 aa; hypothetical protein complement(924419..924694) Chlamydophila abortus S26/3 3337323 YP_220187.1 CDS dnaG NC_004552.2 924799 926574 R synthesizes RNA primers at the replication forks; DNA primase complement(924799..926574) Chlamydophila abortus S26/3 3337324 YP_220188.1 CDS mutS NC_004552.2 926876 929356 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 926876..929356 Chlamydophila abortus S26/3 3337463 YP_220189.1 CDS uvrC NC_004552.2 929360 931174 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 929360..931174 Chlamydophila abortus S26/3 3338240 YP_220190.1 CDS CAB800 NC_004552.2 931183 931644 R Similar to Chlamydophila caviae hypothetical protein CCA00831 SWALL:Q821V4 (EMBL:AE016997) (160 aa) fasta scores: E(): 8.2e-53, 96.73% id in 153 aa, and to Chlamydia pneumoniae CT790 hypothetical protein CPN0939 or CPJ0939 or CP0922 SWALL:Q9Z6W7 (EMBL:AE001673) (156 aa) fasta scores: E(): 1.3e-45, 88.59% id in 149 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(931183..931644) Chlamydophila abortus S26/3 3337325 YP_220191.1 CDS CAB801 NC_004552.2 931762 932268 D Similar to Chlamydophila caviae hypothetical protein CCA00832 SWALL:Q821V3 (EMBL:AE016997) (167 aa) fasta scores: E(): 8.1e-55, 85.11% id in 168 aa, and to Chlamydia muridarum hypothetical protein TC0171 SWALL:Q9PLD3 (EMBL:AE002284) (166 aa) fasta scores: E(): 1.6e-30, 53.01% id in 166 aa; hypothetical protein 931762..932268 Chlamydophila abortus S26/3 3337326 YP_220192.1 CDS rpsN NC_004552.2 932325 932630 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(932325..932630) Chlamydophila abortus S26/3 3338115 YP_220193.1 CDS rpmJ NC_004552.2 932656 932793 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(932656..932793) Chlamydophila abortus S26/3 3338099 YP_220194.1 CDS rnpA NC_004552.2 933208 933627 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 933208..933627 Chlamydophila abortus S26/3 3337327 YP_220195.1 CDS CAB805 NC_004552.2 933569 934615 R Similar to Chlamydophila caviae hypothetical protein CCA00836 SWALL:Q821U9 (EMBL:AE016997) (348 aa) fasta scores: E(): 2.6e-121, 85.63% id in 348 aa, and to Chlamydia muridarum hypothetical protein TC0166 SWALL:Q9PLD8 (EMBL:AE002284) (350 aa) fasta scores: E(): 2.1e-72, 54% id in 350 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(933569..934615) Chlamydophila abortus S26/3 3337328 YP_220196.1 CDS cysS NC_004552.2 935046 936476 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 935046..936476 Chlamydophila abortus S26/3 3337329 YP_220197.1 CDS lysS NC_004552.2 936473 938053 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(936473..938053) Chlamydophila abortus S26/3 3337330 YP_220198.1 CDS CAB808 NC_004552.2 938282 938797 R Similar to Chlamydophila caviae hypothetical protein CCA00842 SWALL:Q821U3 (EMBL:AE016997) (169 aa) fasta scores: E(): 4.5e-53, 78.1% id in 169 aa, and to Chlamydia muridarum hypothetical protein TC0161 SWALL:Q9PLE3 (EMBL:AE002283) (165 aa) fasta scores: E(): 6.2e-34, 52.69% id in 167 aa; hypothetical protein complement(938282..938797) Chlamydophila abortus S26/3 3337331 YP_220199.1 CDS CAB809 NC_004552.2 938961 939674 D Similar to Chlamydophila caviae hypothetical protein CCA00844 SWALL:Q821U1 (EMBL:AE016997) (240 aa) fasta scores: E(): 3.5e-65, 72.19% id in 241 aa, and to Chlamydia pneumoniae CT779 hypothetical protein CPN0925 or CPJ0925 or CP0941 SWALL:Q9Z6Y1 (EMBL:AE001672) (225 aa) fasta scores: E(): 4.9e-33, 48.68% id in 228 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 938961..939674 Chlamydophila abortus S26/3 3337332 YP_220200.1 CDS CAB810 NC_004552.2 939626 941875 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 939626..941875 Chlamydophila abortus S26/3 3337333 YP_220201.1 CDS CAB811 NC_004552.2 941807 942913 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(941807..942913) Chlamydophila abortus S26/3 3337334 YP_220202.1 CDS CAB812 NC_004552.2 942964 944610 R Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; long chain fatty acid--ACP ligase complement(942964..944610) Chlamydophila abortus S26/3 3337335 YP_220203.1 CDS CAB813 NC_004552.2 944603 945364 R Similar to Chlamydophila caviae hypothetical protein CCA00848 SWALL:Q821T7 (EMBL:AE016997) (253 aa) fasta scores: E(): 5.9e-92, 86.56% id in 253 aa, and to Chlamydia pneumoniae SN glycerol-3-P acyltransferase CPN0921 or CP0945 SWALL:Q9Z6Y5 (EMBL:AE001672) (253 aa) fasta scores: E(): 1.1e-69, 64.03% id in 253 aa; hypothetical protein complement(944603..945364) Chlamydophila abortus S26/3 3337336 YP_220204.1 CDS CAB814 NC_004552.2 945472 946452 D Similar to Chlamydia trachomatis sulfite synthesis/biphosphate phosphatase CysQ or CT774 SWALL:O84779 (EMBL:AE001349) (342 aa) fasta scores: E(): 2.7e-62, 49.07% id in 324 aa, and to Pseudomonas syringae inositol-1-monophosphatase SuhB or PSPTO1419 SWALL:Q887A5 (EMBL:AE016860) (271 aa) fasta scores: E(): 1.8e-05, 25.24% id in 305 aa; sulfur metabolism-related protein 945472..946452 Chlamydophila abortus S26/3 3338157 YP_220205.1 CDS CAB815 NC_004552.2 946449 947498 R Similar to Thermoanaerobacter tengcongensis glutamate dehydrogenase/leucine dehydrogenase GdhA3 or TTE2202 SWALL:Q8R831 (EMBL:AE013166) (355 aa) fasta scores: E(): 4.9e-48, 41.69% id in 343 aa, and to Bacillus subtilis leucine dehydrogenase YqiT SWALL:DHLE_BACSU (SWALL:P54531) (364 aa) fasta scores: E(): 1.2e-43, 39.42% id in 345 aa; leucine dehydrogenase complement(946449..947498) Chlamydophila abortus S26/3 3338158 YP_220206.1 CDS CAB816 NC_004552.2 947666 948316 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 947666..948316 Chlamydophila abortus S26/3 3338159 YP_220207.1 CDS CAB817 NC_004552.2 948361 948810 R Similar to Chlamydia muridarum mutt/nudix family protein TC0152 SWALL:Q9PLF2 (EMBL:AE002282) (150 aa) fasta scores: E(): 9.9e-51, 79.19% id in 149 aa, and to Bifidobacterium longum hypothetical protein with possible C-terminal pyrophosphate-releasing NTPase domain BL0653 SWALL:Q8G6I7 (EMBL:AE014686) (181 aa) fasta scores: E(): 3.2e-05, 34.86% id in 109 aa; hypothetical protein complement(948361..948810) Chlamydophila abortus S26/3 3338160 YP_220208.1 CDS fabF NC_004552.2 948813 950063 R FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase complement(948813..950063) Chlamydophila abortus S26/3 3338039 YP_220209.1 CDS CAB819 NC_004552.2 950081 950440 R Similar to Xylella fastidiosa hypothetical protein XF2180 SWALL:Q9PBG4 (EMBL:AE004031) (148 aa) fasta scores: E(): 3.8e-12, 38.31% id in 107 aa, and to Aquifex aeolicus hypothetical protein AQ_1272 SWALL:O67309 (EMBL:AE000732) (109 aa) fasta scores: E(): 5.4e-12, 39% id in 100 aa; hypothetical protein complement(950081..950440) Chlamydophila abortus S26/3 3338161 YP_220210.1 CDS CAB821 NC_004552.2 951136 952800 R Similar to Chlamydophila caviae hypothetical protein CCA00856 SWALL:Q821T0 (EMBL:AE016997) (554 aa) fasta scores: E(): 1.6e-161, 91.51% id in 554 aa, and to Chlamydia pneumoniae CT768 hypothetical protein CPJ0912 or CP0954 SWALL:Q9JS48 (EMBL:AE002253) (553 aa) fasta scores: E(): 5.3e-116, 65.77% id in 558 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(951136..952800) Chlamydophila abortus S26/3 3338163 YP_220211.1 CDS CAB822 NC_004552.2 952890 953951 D Similar to Helicobacter pylori hypothetical protein HP0656 SWALL:O25370 (EMBL:AE000579) (383 aa) fasta scores: E(): 1.2e-57, 44.57% id in 341 aa, and to Campylobacter jejuni hypothetical protein CJ0462 SWALL:Q9PI46 (EMBL:AL139075) (348 aa) fasta scores: E(): 1.6e-54, 43.6% id in 344 aa; hypothetical protein 952890..953951 Chlamydophila abortus S26/3 3338164 YP_220212.1 CDS miaA NC_004552.2 953942 954886 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(953942..954886) Chlamydophila abortus S26/3 3338165 YP_220213.1 CDS CAB825 NC_004552.2 954982 955314 R Similar to Streptomyces coelicolor anti-sigma-B factor antagonist RsbV or BldG or SCO3549 or SCH5.12c SWALL:RSBV_STRCO (SWALL:Q9WVX8) (113 aa) fasta scores: E(): 0.00018, 26.73% id in 101 aa, and to Leptospira interrogans probable anti-sigma factor antagonist LA0839 SWALL:Q8F7V3 (EMBL:AE011269) (110 aa) fasta scores: E(): 3.9e-06, 32.67% id in 101 aa; anti sigma factor antagonist complement(954982..955314) Chlamydophila abortus S26/3 3338166 YP_220214.1 CDS CAB826 NC_004552.2 955390 956178 D Similar to Chlamydophila caviae hypothetical protein CCA00860 SWALL:Q821S7 (EMBL:AE016997) (262 aa) fasta scores: E(): 8.8e-82, 79% id in 262 aa, and to Chlamydia trachomatis hypothetical protein CT764 SWALL:O84769 (EMBL:AE001349) (268 aa) fasta scores: E(): 2.8e-42, 47.05% id in 255 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 955390..956178 Chlamydophila abortus S26/3 3337429 YP_220215.1 CDS CAB827 NC_004552.2 956175 956519 D Similar to Shewanella oneidensis periplasmic divalent cation tolerance protein CutA or SO0697 SWALL:Q8EIY0 (EMBL:AE015515) (107 aa) fasta scores: E(): 7.5e-12, 36.44% id in 107 aa, and to Nitrosomonas europaea CutA1 divalent ion tolerance protein CutA or NE2388 SWALL:Q82SF1 (EMBL:BX321864) (112 aa) fasta scores: E(): 4.6e-11, 37% id in 100 aa; divalent cation tolerance protein 956175..956519 Chlamydophila abortus S26/3 3337981 YP_220216.1 CDS CAB828 NC_004552.2 956616 957044 D Similar in its full length to Chlamydophila caviae kh domain protein CCA00862 SWALL:Q821S5 (EMBL:AE016997) (142 aa) fasta scores: E(): 2.1e-45, 86.62% id in 142 aa, and in its N-terminal region to Thermoanaerobacter tengcongensis hypothetical protein TTE1460 SWALL:YE60_THETN (SWALL:Q8R9X2) (75 aa) fasta scores: E(): 1e-05, 38.96% id in 77 aa, and to Clostridium perfringens hypothetical protein CPE1711 SWALL:YH11_CLOPE (SWALL:Q8XJP5) (75 aa) fasta scores: E(): 1.2e-05, 38.96% id in 77 aa; hypothetical protein 956616..957044 Chlamydophila abortus S26/3 3337539 YP_220217.1 CDS CAB829 NC_004552.2 957110 959542 R catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine and catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase complement(957110..959542) Chlamydophila abortus S26/3 3337540 YP_220218.1 CDS murG NC_004552.2 959551 960627 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(959551..960627) Chlamydophila abortus S26/3 3337541 YP_220219.1 CDS CAB831 NC_004552.2 960536 961690 R Similar to Bacillus subtilis stage V sporulation protein E SpoVE SWALL:SP5E_BACSU (SWALL:P07373) (366 aa) fasta scores: E(): 2e-36, 35.22% id in 352 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri rod shape-determining protein RodA MrdB or B0634 or Z0780 or ECS0672 or SF0647 or S0669 SWALL:RODA_ECOLI (SWALL:P15035) (370 aa) fasta scores: E(): 7.6e-30, 33.96% id in 318 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cell division protein FtsW or B0089 or C0107 or Z0099 or ECS0093 SWALL:FTSW_ECOLI (SWALL:P16457) (414 aa) fasta scores: E(): 4.9e-29, 31.28% id in 358 aa; exported cell division protein complement(960536..961690) Chlamydophila abortus S26/3 3337542 YP_220220.1 CDS CAB832 NC_004552.2 961709 962437 R Similar to Chlamydia trachomatis muramidase NlpD or CT759 SWALL:O84764 (EMBL:AE001348) (245 aa) fasta scores: E(): 4.1e-32, 52.98% id in 251 aa, and to Chlamydia muridarum hypothetical protein TC0140 SWALL:Q9PLG4 (EMBL:AE002281) (243 aa) fasta scores: E(): 5.9e-30, 51.79% id in 251 aa; hypothetical protein complement(961709..962437) Chlamydophila abortus S26/3 3337543 YP_220221.1 CDS murD NC_004552.2 962434 963696 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(962434..963696) Chlamydophila abortus S26/3 3337544 YP_220222.1 CDS mraY NC_004552.2 963700 964743 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(963700..964743) Chlamydophila abortus S26/3 3337545 YP_220223.1 CDS CAB835 NC_004552.2 964761 966107 R Similar to Bacillus subtilis UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF SWALL:MURF_BACSU (SWALL:P96613) (457 aa) fasta scores: E(): 5.6e-28, 28.35% id in 455 aa, and to Escherichia coli UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF or Mra or B0086 SWALL:MURF_ECOLI (SWALL:P11880) (452 aa) fasta scores: E(): 5.1e-23, 26.62% id in 432 aa; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(964761..966107) Chlamydophila abortus S26/3 3337546 YP_220224.1 CDS CAB836 NC_004552.2 966499 968025 D Similar to Thermotoga maritima 60 kDa chaperonin GroL or GroEL or MopA or TM0506 SWALL:CH60_THEMA (SWALL:Q9WYX6) (538 aa) fasta scores: E(): 1.9e-34, 27.11% id in 509 aa, and to Coxiella burnetii 60 kDa chaperonin GroL or GroEL or MopA or HtpB or CBU1718 SWALL:CH60_COXBU (SWALL:P19421) (552 aa) fasta scores: E(): 7e-34, 27.84% id in 510 aa; chaperonin 966499..968025 Chlamydophila abortus S26/3 3337547 YP_220225.1 CDS CAB837 NC_004552.2 968398 969279 D Similar to Brucella melitensis phosphohydrolases, ICC family BMEI0452 SWALL:Q8YIJ2 (EMBL:AE009488) (303 aa) fasta scores: E(): 1.1e-05, 24.08% id in 274 aa, and to Rhizobium loti hypothetical protein MLLl2796 SWALL:Q98HM9 (EMBL:AP003000) (321 aa) fasta scores: E(): 1.9e-05, 24.79% id in 238 aa; hypothetical protein 968398..969279 Chlamydophila abortus S26/3 3337548 YP_220226.1 CDS CAB838 NC_004552.2 969330 969587 R Similar to Chlamydia pneumoniae CT753 hypothetical protein CPN0896 or CPJ0896 SWALL:Q9Z710 (EMBL:AE001670) (76 aa) fasta scores: E(): 3.3e-12, 58.66% id in 75 aa, and to Chlamydia muridarum hypothetical protein TC0134 SWALL:Q9PLH0 (EMBL:AE002280) (74 aa) fasta scores: E(): 4.1e-10, 56% id in 75 aa. Only significant full-length database matches are to Chlamydiaceae proteins. Note the alternative possible translational start at codon 13; hypothetical protein complement(969330..969587) Chlamydophila abortus S26/3 3337549 YP_220227.1 CDS efp NC_004552.2 969610 970182 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(969610..970182) Chlamydophila abortus S26/3 3337658 YP_220228.1 CDS CAB840 NC_004552.2 970386 971261 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 970386..971261 Chlamydophila abortus S26/3 3337550 YP_220229.1 CDS CAB841 NC_004552.2 971255 973252 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(971255..973252) Chlamydophila abortus S26/3 3337551 YP_220230.1 CDS alaS NC_004552.2 973518 976145 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 973518..976145 Chlamydophila abortus S26/3 3337552 YP_220231.1 CDS CAB843 NC_004552.2 976115 979372 D Similar to Bacillus subtilis transcription-repair coupling factor Mfd SWALL:MFD_BACSU (SWALL:P37474) (1177 aa) fasta scores: E(): 1.3e-103, 35.97% id in 1109 aa, and to Escherichia coli transcription-repair coupling factor Mfd or B1114 SWALL:MFD_ECOLI (SWALL:P30958) (1148 aa) fasta scores: E(): 1.8e-100, 35.5% id in 1014 aa; transcription-repair coupling factor 976115..979372 Chlamydophila abortus S26/3 3337553 YP_220232.1 CDS hemE NC_004552.2 979382 980383 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 979382..980383 Chlamydophila abortus S26/3 3337873 YP_220233.1 CDS CAB845 NC_004552.2 980356 981732 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 980356..981732 Chlamydophila abortus S26/3 3337874 YP_220234.1 CDS CAB846 NC_004552.2 981729 982997 D catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase 981729..982997 Chlamydophila abortus S26/3 3337427 YP_220235.1 CDS CAB847 NC_004552.2 982968 985472 R Similar to Chlamydia pneumoniae ChlTR possible phosphoprotein CPN0887 SWALL:Q9Z719 (EMBL:AE001669) (822 aa) fasta scores: E(): 3e-148, 44.88% id in 831 aa, and to Chlamydia muridarum hypothetical protein TC0120 SWALL:Q9PLI0 (EMBL:AE002279) (823 aa) fasta scores: E(): 1.8e-126, 40.43% id in 826 aa. Note the DNA-binding motif between residues 386-407. Only significant full-length database matches are to Chlamydiaceae proteins.; DNA-binding protein complement(982968..985472) Chlamydophila abortus S26/3 3337428 YP_220236.1 CDS CAB848 NC_004552.2 985885 986256 D Similar to the C-terminal region of Parechinus angulosus histone H1, gonadal SWALL:H1_PARAN (SWALL:P02256) (248 aa) fasta scores: E(): 0.0068, 35% id in 120 aa, and of Lytechinus pictus late histone H1 SWALL:H1_LYTPI (SWALL:P06144) (210 aa) fasta scores: E(): 0.02, 36.58% id in 123 aa; histone-like protein 985885..986256 Chlamydophila abortus S26/3 3338076 YP_220237.1 CDS CAB849 NC_004552.2 986480 987685 D Similar to Chlorobium tepidum RNA methyltransferase, TrmA family CT0009 SWALL:AAM71257 (EMBL:AE012780) (483 aa) fasta scores: E(): 6.6e-24, 27.51% id in 418 aa, and to Escherichia coli 23S rRNA (uracil-5-)-methyltransferase RumA or B2785 SWALL:RUMA_ECOLI (SWALL:P55135) (432 aa) fasta scores: E(): 1.6e-15, 23.91% id in 393 aa; RNA methyltransferase 986480..987685 Chlamydophila abortus S26/3 3338004 YP_220238.1 CDS yajC NC_004552.2 987756 988109 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 987756..988109 Chlamydophila abortus S26/3 3338005 YP_220239.1 CDS nqrF NC_004552.2 988228 989523 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 988228..989523 Chlamydophila abortus S26/3 3337471 YP_220240.1 CDS CAB852 NC_004552.2 989566 991029 R Similar to Chlamydia pneumoniae hypothetical protein CPN0882 or CPJ0882 SWALL:Q9Z724 (EMBL:AE001669) (379 aa) fasta scores: E(): 2e-64, 47.36% id in 361 aa; hypothetical protein complement(989566..991029) Chlamydophila abortus S26/3 3338006 YP_220241.1 CDS CAB853 NC_004552.2 991074 991490 R hypothetical protein complement(991074..991490) Chlamydophila abortus S26/3 3338007 YP_220242.1 CDS CAB855 NC_004552.2 997772 1000195 D Similar to Clostridium perfringens stage III sporulation protein E SpoIIIE or CPE1676 SWALL:Q8XJS8 (EMBL:AP003191) (796 aa) fasta scores: E(): 1.2e-74, 34.2% id in 807 aa, and to Bacillus subtilis stage III sporulation protein E SpoIIIE SWALL:SP3E_BACSU (SWALL:P21458) (787 aa) fasta scores: E(): 1.1e-73, 34.78% id in 779 aa; DNA translocase FtsK 997772..1000195 Chlamydophila abortus S26/3 3338008 YP_220243.1 CDS CAB856 NC_004552.2 1000200 1000988 D Similar to Thermoanaerobacter tengcongensis metal-dependent hydrolases of the beta-lactamase superfamily I PhnP or TTE2624 SWALL:Q8R705 (EMBL:AE013202) (259 aa) fasta scores: E(): 3.1e-29, 38.39% id in 237 aa, and to Bacillus halodurans hypothetical protein BH4023 SWALL:Q9K5R5 (EMBL:AP001520) (264 aa) fasta scores: E(): 1.8e-27, 36.59% id in 235 aa; hydrolase 1000200..1000988 Chlamydophila abortus S26/3 3338009 YP_220244.1 CDS CAB857 NC_004552.2 1000985 1001647 D Low simialrity to Leptospira interrogans SET family protein LA3978 SWALL:Q8EZ78 (EMBL:AE011553) (143 aa) fasta scores: E(): 9.5e-07, 37.16% id in 113 aa, and to Bradyrhizobium japonicum BLL5787 protein bll5787 SWALL:Q89I52 (EMBL:AP005956) (186 aa) fasta scores: E(): 0.00017, 34.82% id in 112 aa, and to Chlamydophila caviae SET domain protein CCA00889 SWALL:Q821Q0 (EMBL:AE016997) (220 aa) fasta scores: E(): 3.4e-87, 86.36% id in 220 aa; hypothetical protein 1000985..1001647 Chlamydophila abortus S26/3 3338010 YP_220245.1 CDS CAB858 NC_004552.2 1001652 1002104 R Similar to Rickettsia conorii hypothetical protein RC1288 SWALL:Q92G37 (EMBL:AE008675) (154 aa) fasta scores: E(): 2.9e-20, 39.86% id in 148 aa, and to Sulfolobus tokodaii hypothetical protein ST0476 SWALL:Q975D2 (EMBL:AP000982) (149 aa) fasta scores: E(): 5.2e-20, 43.87% id in 155 aa; hypothetical protein complement(1001652..1002104) Chlamydophila abortus S26/3 3338011 YP_220246.1 CDS CAB859 NC_004552.2 1002118 1003494 R Similar to Streptococcus pyogenes amino acid symporter SPYM18_1219 SWALL:AAL97831 (EMBL:AE010046) (440 aa) fasta scores: E(): 1.7e-41, 31.96% id in 438 aa, and to Clostridium perfringens probable amino acid transport protein CPE1419 SWALL:Q8XKH6 (EMBL:AP003190) (462 aa) fasta scores: E(): 4e-41, 31.18% id in 465 aa; transport-related membrane protein complement(1002118..1003494) Chlamydophila abortus S26/3 3338012 YP_220247.1 CDS CAB860 NC_004552.2 1003604 1004248 R Similar to Chlamydia pneumoniae probable lipoprotein CPN0875/CP0994/CPJ0875 precursor CPN0875 or CP0994 or CPJ0875 SWALL:Y875_CHLPN (SWALL:Q9Z731) (217 aa) fasta scores: E(): 2e-53, 71.42% id in 217 aa, and to Chlamydia muridarum hypothetical lipoprotein TC0107 precursor SWALL:Y107_CHLMU (SWALL:Q9PLJ2) (218 aa) fasta scores: E(): 2.4e-43, 59.81% id in 219 aa; lipoprotein complement(1003604..1004248) Chlamydophila abortus S26/3 3338013 YP_220248.1 CDS CAB861 NC_004552.2 1004484 1005851 D Similar to Chlamydia pneumoniae CT733 hypothetical protein CPN0874 or CPJ0874 or CP0995 SWALL:Q9Z732 (EMBL:AE001667) (453 aa) fasta scores: E(): 9.5e-123, 68.27% id in 457 aa, and to Chlamydia trachomatis hypothetical protein CT733 SWALL:O84738 (EMBL:AE001344) (448 aa) fasta scores: E(): 8.1e-109, 59.64% id in 456 aa; hypothetical protein 1004484..1005851 Chlamydophila abortus S26/3 3338014 YP_220249.1 CDS ribH NC_004552.2 1005869 1006333 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(1005869..1006333) Chlamydophila abortus S26/3 3338087 YP_220250.1 CDS ribA NC_004552.2 1006346 1007611 R bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein complement(1006346..1007611) Chlamydophila abortus S26/3 3338083 YP_220251.1 CDS ribD NC_004552.2 1007694 1008800 R Similar to Escherichia coli riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (riboflavin-specific deaminase); 5-amino-6-(5- phosphoribosylamino)uracil reductase (EC 1.1.1.193) or RibG or B0414 SWALL:RIBD_ECOLI (SWALL:P25539) (367 aa) fasta scores: E(): 6.2e-44, 42.98% id in 335 aa, and to Actinobacillus pleuropneumoniae riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (riboflavin-specific deaminase); 5-amino-6-(5- phosphoribosylamino)uracil reductase (EC 1.1.1.193) or RibG SWALL:RIBD_ACTPL (SWALL:P50853) (376 aa) fasta scores: E(): 4.2e-47, 39.66% id in 363 aa; riboflavin biosynthesis protein RibD complement(1007694..1008800) Chlamydophila abortus S26/3 3338085 YP_220252.1 CDS serS NC_004552.2 1008845 1010119 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1008845..1010119 Chlamydophila abortus S26/3 3338205 YP_220253.1 CDS CAB866 NC_004552.2 1010191 1010934 D Similar to Chlamydia pneumoniae CT728 hypothetical protein CPN0869 or CPJ0869 or CP1000 SWALL:Q9Z737 (EMBL:AE001667) (248 aa) fasta scores: E(): 3.5e-64, 64.91% id in 248 aa, and to Chlamydia muridarum hypothetical protein TC0101 SWALL:Q9PLJ8 (EMBL:AE002277) (248 aa) fasta scores: E(): 6.3e-57, 54.03% id in 248 aa; hypothetical protein 1010191..1010934 Chlamydophila abortus S26/3 3338015 YP_220254.1 CDS CAB867 NC_004552.2 1010950 1012923 D Similar to Bacillus firmus probable cadmium-transporting ATPase CadA SWALL:CADA_BACFI (SWALL:P30336) (723 aa) fasta scores: E(): 4.2e-61, 32.78% id in 665 aa, and to Mycobacterium tuberculosis probable cation-transporting P-type ATPase D CtpD or Rv1469 or MT1515 or MTV007.16 SWALL:CTPD_MYCTU (SWALL:O53160) (657 aa) fasta scores: E(): 1e-53, 33.91% id in 634 aa; cation transport related membrane protein 1010950..1012923 Chlamydophila abortus S26/3 3338016 YP_220255.1 CDS CAB868 NC_004552.2 1012927 1014066 R Similar to Pseudomonas aeruginosa rod shape-determining protein RodA or PA4002 SWALL:Q9X6V4 (EMBL:AF147448) (367 aa) fasta scores: E(): 1.7e-25, 29.8% id in 359 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri rod shape-determining protein RodA or MrdB or B0634 or Z0780 or ECS0672 or SF0647 or s0669 SWALL:RODA_ECOLI (SWALL:P15035) (370 aa) fasta scores: E(): 7e-25, 28.53% id in 354 aa; rod shape-determining protein complement(1012927..1014066) Chlamydophila abortus S26/3 3338017 YP_220256.1 CDS birA NC_004552.2 1014102 1014674 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 1014102..1014674 Chlamydophila abortus S26/3 3337630 YP_220257.1 CDS CAB870 NC_004552.2 1014648 1015175 R Similar to Chlamydia pneumoniae CT724 hypothetical protein CPN0865 or CPJ0865 or CP1004 SWALL:Q9Z741 (EMBL:AE001667) (175 aa) fasta scores: E(): 1.1e-27, 48.27% id in 174 aa, and to Chlamydia muridarum hypothetical protein TC0097 SWALL:Q9PLK2 (EMBL:AE002277) (174 aa) fasta scores: E(): 3e-13, 28.82% id in 170 aa. Contains a possible N-terminal membrane spanning domain.; hypothetical protein complement(1014648..1015175) Chlamydophila abortus S26/3 3338018 YP_220258.1 CDS rluB NC_004552.2 1015218 1015916 R Similar to Thermotoga maritima 16S pseudouridylate synthase TM0264 SWALL:Q9WYA2 (EMBL:AE001708) (239 aa) fasta scores: E(): 1.2e-27, 41.04% id in 229 aa, and to Bacillus subtilis ribosomal large subunit pseudouridine synthase B RluB SWALL:RLUB_BACSU (SWALL:P35159) (229 aa) fasta scores: E(): 2.6e-22, 37.16% id in 226 aa; 16S pseudouridine synthase complement(1015218..1015916) Chlamydophila abortus S26/3 3338088 YP_220259.1 CDS CAB872 NC_004552.2 1016074 1016757 D catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1016074..1016757 Chlamydophila abortus S26/3 3338019 YP_220260.1 CDS CAB873 NC_004552.2 1016712 1017869 D Similar to Anabaena azollae cysteine desulfurase NifS SWALL:NIFS_ANAAZ (SWALL:Q43884) (400 aa) fasta scores: E(): 1.4e-11, 23.01% id in 391 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri cysteine desulfurase IscS or B2530 or C3056 or Z3797 or ECS3396 or SF2577 or S2749 SWALL:ISCS_ECOLI (SWALL:P39171) (404 aa) fasta scores: E(): 2.6e-11, 21.66% id in 300 aa; cysteine desulfurase 1016712..1017869 Chlamydophila abortus S26/3 3338020 YP_220261.1 CDS CAB874 NC_004552.2 1017866 1018687 D Similar to Campylobacter jejuni NifU protein homolog CJ0239C SWALL:Q9PIQ5 (EMBL:AL139074) (323 aa) fasta scores: E(): 2.6e-09, 25.16% id in 310 aa, and to Rhodobacter sphaeroides nitrogen fixation protein NifU SWALL:NIFU_RHOSH (SWALL:Q01180) (246 aa) fasta scores: E(): 0.00085, 24.51% id in 204 aa, and to Chlamydia pneumoniae NifU-related protein CPN0861 or CPJ0861 SWALL:Q9Z745 (EMBL:AE001667) (266 aa) fasta scores: E(): 2.3e-70, 64.39% id in 264 aa; NifU-related protein 1017866..1018687 Chlamydophila abortus S26/3 3338021 YP_220262.1 CDS CAB875 NC_004552.2 1018791 1019804 D Similar to Chlamydia pneumoniae flagellar M-ring protein FliF or CPN0860 or CP1009 SWALL:Q9Z746 (EMBL:AE001667) (341 aa) fasta scores: E(): 1.4e-61, 54.86% id in 339 aa, and to Chlamydia trachomatis flagellar M-ring protein FliF or CT719 SWALL:O84724 (EMBL:AE001342) (334 aa) fasta scores: E(): 8.6e-44, 44.51% id in 337 aa; type III secretion system protein 1018791..1019804 Chlamydophila abortus S26/3 3338022 YP_220263.1 CDS CAB876 NC_004552.2 1019828 1020379 D Similar to Chlamydia pneumoniae CT718 hypothetical protein CPN0859 or CPJ0859 or CP1010 SWALL:Q9Z747 (EMBL:AE001667) (178 aa) fasta scores: E(): 7.9e-42, 65.38% id in 182 aa, and to Chlamydia muridarum hypothetical protein TC0091 SWALL:Q9PLK8 (EMBL:AE002276) (174 aa) fasta scores: E(): 1.6e-30, 60.43% id in 139 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1019828..1020379 Chlamydophila abortus S26/3 3338023 YP_220264.1 CDS CAB877 NC_004552.2 1020376 1021680 D involved in type III protein export; type III secretion system ATPase 1020376..1021680 Chlamydophila abortus S26/3 3338024 YP_220265.1 CDS CAB878 NC_004552.2 1021673 1022047 D Similar to Chlamydia pneumoniae CT716 hypothetical protein CPN0857 or CPJ0857 or CP1012 SWALL:Q9Z749 (EMBL:AE001667) (122 aa) fasta scores: E(): 4.6e-13, 46.72% id in 122 aa, and to Chlamydia muridarum hypothetical protein TC0089 SWALL:Q9PLL0 (EMBL:AE002276) (120 aa) fasta scores: E(): 1.1e-09, 40% id in 115 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1021673..1022047 Chlamydophila abortus S26/3 3338025 YP_220266.1 CDS CAB879 NC_004552.2 1022053 1023435 D Similar to Chlamydia pneumoniae UDP-glucose pyrophosphorylase CPN0856 or CPJ0856 or CP1013 SWALL:Q9Z750 (EMBL:AE001667) (461 aa) fasta scores: E(): 4.1e-167, 85.68% id in 461 aa, and to Homo sapiens UDP-N-acetylhexosamine pyrophosphorylase Uap1 or SpaG2 SWALL:UAP1_HUMAN (SWALL:Q16222) (522 aa) fasta scores: E(): 1.4e-23, 28.47% id in 432 aa; UDP-N-acetylhexosamine pyrophosphorylase 1022053..1023435 Chlamydophila abortus S26/3 3338026 YP_220267.1 CDS gpsA NC_004552.2 1023432 1024436 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1023432..1024436 Chlamydophila abortus S26/3 3338027 YP_220268.1 CDS CAB881 NC_004552.2 1024568 1025602 D Similar to Chlamydia pneumoniae outer membrane protein B precursor OmpB or PorB or CPN0854 or CP1015 SWALL:OMP2_CHLPN (SWALL:Q9Z752) (344 aa) fasta scores: E(): 8.9e-100, 68.31% id in 344 aa, and to Chlamydophila felis major outer membrane protein precursor OmpA SWALL:Q99QB0 (EMBL:AF269257) (392 aa) fasta scores: E(): 3.8e-05, 22.71% id in 339 aa; exported outer membrane protein 1024568..1025602 Chlamydophila abortus S26/3 3338028 YP_220269.1 CDS CAB882 NC_004552.2 1025599 1026765 R Similar to Chlamydia trachomatis hypothetical protein CT712 SWALL:O84718 (EMBL:AE001342) (390 aa) fasta scores: E(): 6.5e-85, 63.01% id in 392 aa, and to Chlamydia muridarum hypothetical protein TC0085 SWALL:Q9PLL4 (EMBL:AE002276) (390 aa) fasta scores: E(): 6.6e-81, 58.41% id in 392 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(1025599..1026765) Chlamydophila abortus S26/3 3338029 YP_220270.1 CDS CAB883 NC_004552.2 1026774 1029014 R Similar to Chlamydia trachomatis hypothetical protein CT711 SWALL:O84717 (EMBL:AE001342) (767 aa) fasta scores: E(): 4.1e-71, 44.68% id in 772 aa, and to Chlamydia muridarum hypothetical protein TC0084 SWALL:Q9PLL5 (EMBL:AE002276) (769 aa) fasta scores: E(): 3.2e-70, 43.33% id in 773 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(1026774..1029014) Chlamydophila abortus S26/3 3338030 YP_220271.1 CDS CAB884 NC_004552.2 1029129 1030940 R catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase complement(1029129..1030940) Chlamydophila abortus S26/3 3338031 YP_220272.1 CDS CAB885 NC_004552.2 1030937 1031989 R Similar to Bacillus subtilis rod shape-determining protein MreB SWALL:MREB_BACSU (SWALL:Q01465) (337 aa) fasta scores: E(): 1.4e-64, 55.06% id in 336 aa, and to Escherichia coli, Escherichia coli O6, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri rod shape-determining protein MreB SWALL:MREB_ECOLI (SWALL:P13519) (347 aa) fasta scores: E(): 1e-63, 57.73% id in 336 aa; rod shape-determining protein MreB complement(1030937..1031989) Chlamydophila abortus S26/3 3338032 YP_220273.1 CDS CAB886 NC_004552.2 1032042 1035539 R Similar to Clostridium acetobutylicum superfamily II DNA/RNA helicases, Snf2 family CAC3303 SWALL:Q97E16 (EMBL:AE007827) (1077 aa) fasta scores: E(): 2e-73, 29.38% id in 1181 aa, and to Fusobacterium nucleatum SWF/SNF family helicase FN1160 SWALL:Q8REE7 (EMBL:AE010621) (1089 aa) fasta scores: E(): 2.2e-56, 29.64% id in 1130 aa; helicase complement(1032042..1035539) Chlamydophila abortus S26/3 3338033 YP_220274.1 CDS tig NC_004552.2 1035835 1037160 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1035835..1037160 Chlamydophila abortus S26/3 3338218 YP_220275.1 CDS clpP NC_004552.2 1037333 1037950 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1037333..1037950 Chlamydophila abortus S26/3 3337633 YP_220276.1 CDS clpX NC_004552.2 1037960 1039225 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1037960..1039225 Chlamydophila abortus S26/3 3337635 YP_220277.1 CDS CAB890 NC_004552.2 1039255 1040487 D Similar to Chlamydia pneumoniae poly A polymerase PcnB_1 or CPN0845 or CP1024 SWALL:Q9Z761 (EMBL:AE001665) (410 aa) fasta scores: E(): 3.9e-138, 81.22% id in 410 aa, and to Bacillus subtilis poly A polymerase PapS SWALL:PAPS_BACSU (SWALL:P42977) (397 aa) fasta scores: E(): 1.2e-29, 34.21% id in 415 aa; poly A polymerase 1039255..1040487 Chlamydophila abortus S26/3 3338034 YP_220278.1 CDS engA NC_004552.2 1040610 1042034 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1040610..1042034 Chlamydophila abortus S26/3 3337827 YP_220279.1 CDS secA NC_004552.2 1042695 1045604 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(1042695..1045604) Chlamydophila abortus S26/3 3338203 YP_220280.1 CDS CAB895 NC_004552.2 1045790 1047115 R Similar to Chlamydophila caviae hypothetical protein CCA00926 SWALL:Q821L4 (EMBL:AE016997) (441 aa) fasta scores: E(): 7e-170, 89.34% id in 441 aa, and to Chlamydia muridarum hypothetical protein TC0073 SWALL:Q9PLM6 (EMBL:AE002274) (441 aa) fasta scores: E(): 4.2e-119, 60.54% id in 441 aa. Note contains a possible N-terminal membrane spanning domain.; hypothetical protein complement(1045790..1047115) Chlamydophila abortus S26/3 3337829 YP_220281.1 CDS CAB896 NC_004552.2 1047181 1048080 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(1047181..1048080) Chlamydophila abortus S26/3 3337830 YP_220282.1 CDS trmE NC_004552.2 1048237 1049568 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1048237..1049568 Chlamydophila abortus S26/3 3337498 YP_220283.1 CDS CAB898 NC_004552.2 1049558 1050217 D Similar to Chlamydia muridarum endonuclease III SWALL:Q9PLN0 (EMBL:AE002274) (210 aa) fasta scores: E(): 1.4e-56, 68.34% id in 199 aa, and to Micrococcus luteus ultraviolet N-glycosylase/ap lyase Pdg SWALL:UVEN_MICLU (SWALL:P46303) (279 aa) fasta scores: E(): 3.2e-18, 39.15% id in 189 aa; DNA repair protein 1049558..1050217 Chlamydophila abortus S26/3 3337831 YP_220284.1 CDS CAB899 NC_004552.2 1050371 1051600 D Similar to Chlamydia pneumoniae branched-chain amino acid transport system carrier protein, Cp1033 SWALL:Q9K1T5 (EMBL:AE002260) (412 aa) fasta scores: E(): 2.4e-116, 72.57% id in 412 aa, and to Lactobacillus delbrueckii branched-chain amino acid transport system carrier protein BrnQ SWALL:BRNQ_LACDL (SWALL:P54104) (446 aa) fasta scores: E(): 1.2e-21, 28.71% id in 397 aa, and to Escherichia coli branched-chain amino acid transport system II carrier protein BrnQ SWALL:BRNQ_ECOLI (SWALL:P37011) (439 aa) fasta scores: E(): 1.4e-13, 26.35% id in 387 aa; branched-chain amino acid transport protein 1050371..1051600 Chlamydophila abortus S26/3 3337832 YP_220285.1 CDS CAB900 NC_004552.2 1051635 1055255 D Similar to Chlamydia pneumoniae Swi/Snf family helicase_1 SWALL:Q9Z771 (EMBL:AE001664) (1215 aa) fasta scores: E(): 0, 68.01% id in 1210 aa, and to Plasmodium falciparum Pfsnf2l SWALL:O00914 (EMBL:AF003086) (1422 aa) fasta scores: E(): 8.5e-40, 31.1% id in 508 aa, and to Mus musculus DNA-dependent ATPase Snf2l Smarca1 or Snf2L SWALL:Q91Y58 (EMBL:AF325920) (1064 aa) fasta scores: E(): 4.7e-34, 31.16% id in 616 aa; DNA helicase-related protein 1051635..1055255 Chlamydophila abortus S26/3 3337833 YP_220286.1 CDS CAB901 NC_004552.2 1055279 1055743 R Similar to Chlamydia pneumoniae hypothetical protein SWALL:Q9Z772 (EMBL:AE001664) (154 aa) fasta scores: E(): 2.5e-45, 76.38% id in 144 aa; hypothetical protein complement(1055279..1055743) Chlamydophila abortus S26/3 3337834 YP_220287.1 CDS pdhD NC_004552.2 1056005 1057393 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1056005..1057393 Chlamydophila abortus S26/3 3337660 YP_220288.1 CDS lipA3 NC_004552.2 1057390 1058322 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1057390..1058322 Chlamydophila abortus S26/3 3337451 YP_220289.1 CDS CAB904 NC_004552.2 1058534 1059526 D Similar to Chlamydia pneumoniae Yop translocation protein J SWALL:Q9Z778 (EMBL:AE001663) (335 aa) fasta scores: E(): 1.4e-96, 80.53% id in 334 aa, and to Burkholderia pseudomallei SctJ SWALL:Q93KZ5 (EMBL:AF074878) (274 aa) fasta scores: E(): 3.2e-13, 35.13% id in 185 aa; type III export protein 1058534..1059526 Chlamydophila abortus S26/3 3337835 YP_220290.1 CDS CAB905 NC_004552.2 1059526 1060359 D Similar to Chlamydia pneumoniae hypothetical protein SWALL:Q9Z779 (EMBL:AE001663) (277 aa) fasta scores: E(): 2.7e-83, 70.39% id in 277 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1059526..1060359 Chlamydophila abortus S26/3 3337836 YP_220291.1 CDS CAB906 NC_004552.2 1060525 1061181 D Similar to Chlamydia pneumoniae yop translocation l yscl or cpn0826 or cp1045 SWALL:Q9Z780 (EMBL:AE001663) (233 aa) fasta scores: E(): 4.1e-54, 74.05% id in 212 aa, and to Yersinia enterocolitica yop proteins translocation protein l yscL SWALL:YSCL_YEREN (SWALL:Q01253) (223 aa) fasta scores: E(): 2.4e-09, 25.12% id in 199 aa; type III secretion system protein 1060525..1061181 Chlamydophila abortus S26/3 3337837 YP_220292.1 CDS CAB907 NC_004552.2 1061196 1062113 D Similar to Chlamydia pneumoniae Yop translocation protein R SWALL:Q9Z781 (EMBL:AE001663) (306 aa) fasta scores: E(): 8.8e-90, 81.1% id in 307 aa, and to Ralstonia solanacearum hypersensitivity response secretion protein HrcR or HrpT SWALL:HRCR_RALSO (SWALL:Q52488) (217 aa) fasta scores: E(): 3e-27, 38.63% id in 220 aa; type III secretion system protein 1061196..1062113 Chlamydophila abortus S26/3 3337838 YP_220293.1 CDS CAB908 NC_004552.2 1062123 1062407 D Similar to Chlamydia pneumoniae YopS translocation protein SWALL:Q9Z782 (EMBL:AE001663) (95 aa) fasta scores: E(): 1.4e-31, 90.52% id in 95 aa, and to Yersinia pestis Yop protein translocation protein S SWALL:YSCS_YERPE (SWALL:P40298) (88 aa) fasta scores: E(): 1.5e-09, 43.05% id in 72 aa, and to Escherichia coli EscS SWALL:Q9AJ28 (EMBL:AF200363) (89 aa) fasta scores: E(): 6.4e-09, 41.33% id in 75 aa; type III export protein 1062123..1062407 Chlamydophila abortus S26/3 3337839 YP_220294.1 CDS CAB909 NC_004552.2 1062414 1063283 D Similar to Chlamydia pneumoniae YopT tranlocation protein SWALL:Q9Z783 (EMBL:AE001663) (289 aa) fasta scores: E(): 3.6e-99, 82% id in 289 aa, and to Salmonella typhimurium secretion system apparatus protein SsaT or stm1421 SWALL:SSAT_SALTY (SWALL:P96068) (259 aa) fasta scores: E(): 2.3e-13, 27.27% id in 242 aa; type III export protein 1062414..1063283 Chlamydophila abortus S26/3 3337840 YP_220295.1 CDS CAB910 NC_004552.2 1063373 1063816 R Similar to Chlamydia pneumoniae hypothetical protein SWALL:Q9Z784 (EMBL:AE001663) (158 aa) fasta scores: E(): 3.7e-35, 66.89% id in 145 aa; hypothetical protein complement(1063373..1063816) Chlamydophila abortus S26/3 3337841 YP_220296.1 CDS CAB911 NC_004552.2 1063908 1064912 R Similar to Chlamydia pneumoniae hypothetical protein SWALL:Q9Z785 (EMBL:AE001662) (334 aa) fasta scores: E(): 8.5e-92, 69.16% id in 334 aa; hypothetical protein complement(1063908..1064912) Chlamydophila abortus S26/3 3337842 YP_220297.1 CDS CAB912 NC_004552.2 1064915 1065457 R Similar to Chlamydia pneumoniae hypothetical protein SWALL:Q9K1T1 (EMBL:AE002261) (174 aa) fasta scores: E(): 1.4e-23, 46.38% id in 166 aa; periplasmic protein complement(1064915..1065457) Chlamydophila abortus S26/3 3337843 YP_220298.1 CDS CAB913 NC_004552.2 1065442 1065885 R Similar to Chlamydia pneumoniae ct568 hypothetical protein cpn0819 or cpj0819 SWALL:Q9Z787 (EMBL:AE001662) (148 aa) fasta scores: E(): 7.7e-32, 56.73% id in 141 aa; hypothetical protein complement(1065442..1065885) Chlamydophila abortus S26/3 3337844 YP_220299.1 CDS gspG NC_004552.2 1065888 1066265 R Similar to Chlamydia pneumoniae outer membrane protein SWALL:OMPX_CHLPN (SWALL:Q9Z788) (123 aa) fasta scores: E(): 2.6e-33, 78.89% id in 109 aa, and to Legionella pneumophila LspG precursor SWALL:Q9XD71 (EMBL:AF111940) (140 aa) fasta scores: E(): 0.13, 23.42% id in 111 aa, and to Escherichia coli precursor HofG or HopG SWALL:GSPG_ECOLI (SWALL:P41442) (145 aa) fasta scores: E(): 1.1, 28.97% id in 107 aa; general secretion pathway protein G (periplasmic) complement(1065888..1066265) Chlamydophila abortus S26/3 3337988 YP_220300.1 CDS gspF NC_004552.2 1066284 1067459 R Similar to Chlamydia pneumoniae general secretion protein F GspF SWALL:Q9Z789 (EMBL:AE001662) (391 aa) fasta scores: E(): 2.2e-107, 71.42% id in 392 aa, and to Pseudomonas aeruginosa general secretion pathway protein F xcps or pa3102 SWALL:GSPF_PSEAE (SWALL:Q00513) (405 aa) fasta scores: E(): 6.4e-28, 27.38% id in 409 aa; general secretion pathway protein F complement(1066284..1067459) Chlamydophila abortus S26/3 3337987 YP_220301.1 CDS gspE NC_004552.2 1067470 1068963 R Similar to Pseudomonas aeruginosa general secretion pathway protein E XcpR SWALL:GSPE_PSEAE (SWALL:Q00512) (502 aa) fasta scores: E(): 6.1e-69, 47.63% id in 487 aa, and to Chlamydia pneumoniae genral secretion protein E GspE SWALL:Q9Z790 (EMBL:AE001662) (496 aa) fasta scores: E(): 2.3e-133, 75.86% id in 493 aa; general secretion pathway protein E complement(1067470..1068963) Chlamydophila abortus S26/3 3337986 YP_220302.1 CDS gspD NC_004552.2 1068953 1071214 R Similar to Escherichia coli probable general secretion pathway protein D precursor GspD SWALL:GSPD_ECOLI (SWALL:P45758) (650 aa) fasta scores: E(): 5.8e-13, 21.23% id in 617 aa, and to Chlamydia pneumoniae general secretion protein D GspD SWALL:Q9Z791 (EMBL:AE001662) (754 aa) fasta scores: E(): 9.2e-217, 71.22% id in 754 aa, and to Aeromonas salmonicida general secretion pathway protein D precursor ExeD SWALL:GSPD_AERSA (SWALL:P45778) (678 aa) fasta scores: E(): 1.3e-10, 20.03% id in 599 aa; general secretion pathway protein D complement(1068953..1071214) Chlamydophila abortus S26/3 3337985 YP_220303.1 CDS CAB918 NC_004552.2 1071215 1072528 R Similar to Chlamydia pneumoniae hypothetical protein cpn0814 SWALL:Q9Z792 (EMBL:AE001662) (417 aa) fasta scores: E(): 4.3e-109, 61% id in 418 aa, and to Chlamydia trachomatis hypothetical protein Ct573 SWALL:O84577 (EMBL:AE001327) (409 aa) fasta scores: E(): 4.5e-76, 50.24% id in 406 aa. Note possible alternative translational start site at codon 20. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(1071215..1072528) Chlamydophila abortus S26/3 3337845 YP_220304.1 CDS CAB919 NC_004552.2 1072649 1073719 R Similar to Chlamydia pneumoniae aminopeptidase P PepP SWALL:Q9Z793 (EMBL:AE001662) (355 aa) fasta scores: E(): 2.3e-91, 62.64% id in 356 aa, and to Pyrococcus furiosus Xaa-Pro dipeptidase PepQ SWALL:PEPQ_PYRFU (SWALL:P81535) (348 aa) fasta scores: E(): 8.1e-35, 32.09% id in 349 aa; peptidase complement(1072649..1073719) Chlamydophila abortus S26/3 3337846 YP_220305.1 CDS mutL NC_004552.2 1073723 1075471 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(1073723..1075471) Chlamydophila abortus S26/3 3337462 YP_220306.1 CDS CAB921 NC_004552.2 1075699 1076382 D Similar to Chlamydia muridarum type III secretion chaperone SycD SWALL:Q9PJG4 (EMBL:AE002353) (246 aa) fasta scores: E(): 1e-66, 77.82% id in 230 aa, and to Yersinia pseudotuberculosis low calcium response locus protein H LcrH SWALL:LCRH_YERPS (SWALL:P23995) (168 aa) fasta scores: E(): 6.3e-07, 26.31% id in 152 aa; regulatory protein 1075699..1076382 Chlamydophila abortus S26/3 3337847 YP_220307.1 CDS CAB922 NC_004552.2 1076406 1076795 D Similar to Chlamydia pneumoniae hypothetical protein SWALL:Q9Z796 (EMBL:AE001662) (120 aa) fasta scores: E(): 1.3e-13, 48% id in 125 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1076406..1076795 Chlamydophila abortus S26/3 3337973 YP_220308.1 CDS CAB923 NC_004552.2 1076834 1078318 D Similar to Chlamydia muridarum hypothetical protein Tc0867 SWALL:Q9PJG2 (EMBL:AE002353) (491 aa) fasta scores: E(): 1.6e-91, 63.17% id in 497 aa; hypothetical protein 1076834..1078318 Chlamydophila abortus S26/3 3337623 YP_220309.1 CDS CAB924 NC_004552.2 1078348 1079670 D Similar to Chlamydia muridarum hypothetical protein Tc0868 SWALL:Y868_CHLMU (SWALL:Q9PJG1) (436 aa) fasta scores: E(): 2.6e-76, 65.76% id in 444 aa; hypothetical protein 1078348..1079670 Chlamydophila abortus S26/3 3337624 YP_220310.1 CDS CAB925 NC_004552.2 1079746 1080648 R Similar to Chlamydia muridarum hypothetical protein Tc0869 SWALL:Q9PJG0 (EMBL:AE002353) (318 aa) fasta scores: E(): 5.1e-79, 67.55% id in 302 aa, and to Bacillus subtilis hypothetical transport protein YoaV SWALL:YOAV_BACSU (SWALL:O34416) (292 aa) fasta scores: E(): 4.1e-09, 21.83% id in 284 aa; exported membrane protein complement(1079746..1080648) Chlamydophila abortus S26/3 3337625 YP_220311.1 CDS thrS NC_004552.2 1080854 1082761 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1080854..1082761 Chlamydophila abortus S26/3 3338217 YP_220312.1 CDS CAB927 NC_004552.2 1082792 1083559 D Similar to Chlamydia pneumoniae ParA family protein SWALL:PARA_CHLPN (SWALL:Q9Z7A1) (255 aa) fasta scores: E(): 1.1e-93, 90.98% id in 255 aa, and to Chlamydia trachomatis virulence plasmid ParA family protein pgp5-d SWALL:GP5D_CHLTR (SWALL:P10559) (264 aa) fasta scores: E(): 3.9e-28, 37% id in 254 aa; chromosome partitioning protein 1082792..1083559 Chlamydophila abortus S26/3 3337626 YP_220313.1 CDS CAB928 NC_004552.2 1083564 1084316 D Similar to Chlamydia muridarum virulence plasmid protein pgp6-D-related protein tc0872 SWALL:GP6R_CHLMU (SWALL:Q9PJF7) (262 aa) fasta scores: E(): 3.3e-66, 71.59% id in 250 aa, and to Chlamydia trachomatis virulence plasmid protein pgp6-d SWALL:GP6D_CHLTR (SWALL:P10560) (247 aa) fasta scores: E(): 3.4e-10, 30.46% id in 256 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1083564..1084316 Chlamydophila abortus S26/3 3337627 YP_220314.1 CDS CAB929 NC_004552.2 1084319 1084873 D Similar to Chlamydia pneumoniae protein SWALL:Y803_CHLPN (SWALL:Q9Z7A3) (184 aa) fasta scores: E(): 6.1e-62, 86.95% id in 184 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1084319..1084873 Chlamydophila abortus S26/3 3337628 YP_220315.1 CDS trpS NC_004552.2 1084885 1085922 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1084885..1085922 Chlamydophila abortus S26/3 3338231 YP_220316.1 CDS uvrB NC_004552.2 1085938 1087908 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1085938..1087908 Chlamydophila abortus S26/3 3338239 YP_220317.1 CDS eno NC_004552.2 1088083 1089357 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1088083..1089357 Chlamydophila abortus S26/3 3338035 YP_220318.1 CDS CAB933 NC_004552.2 1089613 1091520 D Similar to Chlamydia pneumoniae sigma regulatory family protein-PP2c phosphatase RbsU SWALL:Q9Z7B3 (EMBL:AE001660) (635 aa) fasta scores: E(): 1.8e-165, 65.98% id in 632 aa, and to the C-terminus of Bacillus subtilis phosphoserine phosphatase sigma factor SigB regulation protein, RsbU SWALL:RSBU_BACSU (SWALL:P40399) (335 aa) fasta scores: E(): 1.2e-09, 24.8% id in 250 aa; regulatory protein 1089613..1091520 Chlamydophila abortus S26/3 3337937 YP_220319.1 CDS CAB934 NC_004552.2 1091517 1093337 D Similar to Chlamydia pneumoniae hypothetical protein SWALL:Q9Z7B4 (EMBL:AE001660) (604 aa) fasta scores: E(): 2.3e-150, 62.37% id in 606 aa; hypothetical protein 1091517..1093337 Chlamydophila abortus S26/3 3337938 YP_220320.1 CDS CAB935 NC_004552.2 1093897 1096788 D Similar to Chlamydia trachomatis hypothetical protein Ct590 SWALL:O84594 (EMBL:AE001329) (954 aa) fasta scores: E(): 0, 58.77% id in 963 aa. Note the differing N-termini. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1093897..1096788 Chlamydophila abortus S26/3 3337939 YP_220321.1 CDS sdhB NC_004552.2 1096785 1097576 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(1096785..1097576) Chlamydophila abortus S26/3 3338201 YP_220322.1 CDS sdhA NC_004552.2 1097591 1099474 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(1097591..1099474) Chlamydophila abortus S26/3 3338200 YP_220323.1 CDS sdhC NC_004552.2 1099479 1100375 R Similar to Chlamydia pneumoniae succinate dehydrogenase SdhC or cpn0788 or cp1084 SWALL:Q9Z7B8 (EMBL:AE001660) (297 aa) fasta scores: E(): 1.2e-82, 62.62% id in 297 aa, and to Bacillus subtilis succinate dehydrogenase cytochrome b-558 subunit SdhC SWALL:DHSC_BACSU (SWALL:P08064) (202 aa) fasta scores: E(): 0.015, 24.26% id in 272 aa; succinate dehydrogenase subunit complement(1099479..1100375) Chlamydophila abortus S26/3 3338202 YP_220324.1 CDS CAB939 NC_004552.2 1100467 1101267 R Similar to Chlamydia pneumoniae PHP superfamily yabd or cpn0787 or cp1085 SWALL:Q9Z7B9 (EMBL:AE001660) (261 aa) fasta scores: E(): 6.3e-78, 69.84% id in 262 aa, and to Brucella melitensis sec-independent protein TatD bmei0986 SWALL:Q8YH18 (EMBL:AE009539) (265 aa) fasta scores: E(): 3.3e-34, 39.46% id in 261 aa; hypothetical protein complement(1100467..1101267) Chlamydophila abortus S26/3 3337940 YP_220325.1 CDS dsbD NC_004552.2 1101437 1103575 R Similar to Chlamydia pneumoniae thiol:disulfide interchange protein DsbD cp1086 SWALL:Q9K1S6 (EMBL:AE002265) (714 aa) fasta scores: E(): 4.5e-198, 70.84% id in 710 aa, and to Escherichia coli thiol:disulfide interchange protein DsbD precursor SWALL:DSBD_ECOLI (SWALL:P36655) (565 aa) fasta scores: E(): 1.2e-10, 27.44% id in 419 aa; thiol:disulfide interchange protein complement(1101437..1103575) Chlamydophila abortus S26/3 3337653 YP_220326.1 CDS CAB941 NC_004552.2 1103747 1104445 D Similar to Chlamydia pneumoniae macromolecule transporter ExbB SWALL:Q9Z7C1 (EMBL:AE001659) (232 aa) fasta scores: E(): 1.8e-73, 85.34% id in 232 aa, and to Escherichia coli TolQ protein SWALL:TOLQ_ECOLI (SWALL:P05828) (230 aa) fasta scores: E(): 2.5e-06, 25.82% id in 213 aa; transport protein TolQ 1103747..1104445 Chlamydophila abortus S26/3 3337941 YP_220327.1 CDS exbD NC_004552.2 1104442 1104849 D Similar to Escherichia coli biopolymer transport ExbD protein SWALL:EXBD_ECOLI (SWALL:P18784) (141 aa) fasta scores: E(): 0.00012, 26.35% id in 129 aa, and to Chlamydia trachomatis biopolymer transport protein ExbD or ct597 SWALL:O84602 (EMBL:AE001330) (135 aa) fasta scores: E(): 2.3e-33, 68.14% id in 135 aa, and to Xanthomonas campestris biopolymer transport ExbD1 protein or Xcc0010 SWALL:EXB1_XANCP (SWALL:O34259) (140 aa) fasta scores: E(): 4.3e-06, 32.54% id in 126 aa; biopolymer transport protein ExbD 1104442..1104849 Chlamydophila abortus S26/3 3338037 YP_220328.1 CDS CAB943 NC_004552.2 1104852 1105610 D Similar to Chlamydia pneumoniae ct598 hypothetical protein SWALL:Q9JRY0 (EMBL:AE002265) (262 aa) fasta scores: E(): 5.7e-19, 39.24% id in 265 aa, and to Escherichia coli TonB protein SWALL:TONB_ECOLI (SWALL:P02929) (239 aa) fasta scores: E(): 0.2, 25.23% id in 214 aa; exported TonB protein 1104852..1105610 Chlamydophila abortus S26/3 3337942 YP_220329.1 CDS tolB NC_004552.2 1105630 1106913 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1105630..1106913 Chlamydophila abortus S26/3 3337943 YP_220330.1 CDS CAB945 NC_004552.2 1106924 1107499 D Similar to Chlamydia trachomatis peptidoglycan-associated lipoprotein Pal or ct600 SWALL:O84605 (EMBL:AE001330) (188 aa) fasta scores: E(): 2.7e-53, 72.25% id in 191 aa, and to Pseudomonas aeruginosa outer membrane protein OprL precursor or pa0973 SWALL:Q9I4Z4 (EMBL:AE004530) (168 aa) fasta scores: E(): 6e-13, 44.73% id in 114 aa, and to Escherichia coli peptidoglycan-associated lipoprotein precursor Pal or ExcC SWALL:PAL_ECOLI (SWALL:P07176) (173 aa) fasta scores: E(): 4.9e-12, 42.37% id in 118 aa; peptidoglycan-associated protein (periplasmic) 1106924..1107499 Chlamydophila abortus S26/3 3337944 YP_220331.1 CDS CAB946 NC_004552.2 1107489 1108106 D Similar to Chlamydia pneumoniae N-acetylmuramoyl-L-ala amidase AmiB SWALL:Q9Z7C6 (EMBL:AE001659) (205 aa) fasta scores: E(): 3.1e-36, 62.08% id in 182 aa, and to Bacillus subtilis endopeptidase LytE precursor or PapQ or CwlF SWALL:LYTE_BACSU (SWALL:P54421) (334 aa) fasta scores: E(): 0.61, 26.79% id in 153 aa; periplasmic hydrolase 1107489..1108106 Chlamydophila abortus S26/3 3337945 YP_220332.1 CDS CAB947 NC_004552.2 1108205 1108603 D Similar to Chlamydia pneumoniae ct602 hypothetical protein SWALL:Q9Z7C7 (EMBL:AE001659) (129 aa) fasta scores: E(): 3.7e-39, 72.72% id in 132 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1108205..1108603 Chlamydophila abortus S26/3 3337946 YP_220333.1 CDS CAB948 NC_004552.2 1108600 1109190 R Similar to Chlamydia pneumoniae thio-specific antioxidant AhpC or cpn0778 SWALL:Q9Z7C8 (EMBL:AE001659) (196 aa) fasta scores: E(): 1.9e-57, 72.91% id in 192 aa, and to Homo sapiens peroxiredoxin 2 PrdX2 or TdpX1 or NkeFB SWALL:PDX2_HUMAN (SWALL:P32119) (198 aa) fasta scores: E(): 3.9e-38, 49.73% id in 191 aa; alkyl hydroperoxide reductase complement(1108600..1109190) Chlamydophila abortus S26/3 3337947 YP_220334.1 CDS groEL NC_004552.2 1109417 1111057 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; molecular chaperone GroEL complement(1109417..1111057) Chlamydophila abortus S26/3 3337975 YP_220335.1 CDS CAB951 NC_004552.2 1111161 1112402 R Similar to Chlamydia pneumoniae ct605 hypothetical protein SWALL:Q9Z7D0 (EMBL:AE001659) (414 aa) fasta scores: E(): 5.5e-109, 60.82% id in 411 aa, and to Bacillus subtilis hypothetical protein YbbC SWALL:YBBC_BACSU (SWALL:P40407) (414 aa) fasta scores: E(): 2.7e-36, 35.71% id in 336 aa; hypothetical protein complement(1111161..1112402) Chlamydophila abortus S26/3 3337948 YP_220336.1 CDS CAB952 NC_004552.2 1112637 1113257 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 1112637..1113257 Chlamydophila abortus S26/3 3337949 YP_220337.1 CDS CAB953 NC_004552.2 1113240 1113473 R Similar to Chlamydia pneumoniae ct606.1 hypothetical protein SWALL:Q9Z7D2 (EMBL:AE001659) (77 aa) fasta scores: E(): 8.6e-19, 70.13% id in 77 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(1113240..1113473) Chlamydophila abortus S26/3 3337950 YP_220338.1 CDS ung NC_004552.2 1113470 1114159 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(1113470..1114159) Chlamydophila abortus S26/3 3338238 YP_220339.1 CDS uvrD NC_004552.2 1114273 1116186 D Similar to Escherichia coli DNA helicase II UvrD or MutU or PdeB or Rad or RecL SWALL:UVRD_ECOLI (SWALL:P03018) (720 aa) fasta scores: E(): 9.8e-75, 38.23% id in 646 aa, and to Chlamydia pneumoniae DNA helicase UvrD SWALL:Q9Z7D4 (EMBL:AE001658) (639 aa) fasta scores: E(): 2.5e-184, 75.39% id in 634 aa, and to Bacillus stearothermophilus ATP-dependent DNA helicase PcrA SWALL:PCRA_BACST (SWALL:P56255) (724 aa) fasta scores: E(): 6.3e-90, 44.25% id in 644 aa; DNA helicase II, UvrD 1114273..1116186 Chlamydophila abortus S26/3 3338241 YP_220340.1 CDS rpoN NC_004552.2 1116189 1117460 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 1116189..1117460 Chlamydophila abortus S26/3 3338103 YP_220341.1 CDS CAB957 NC_004552.2 1117482 1118279 R Similar to Chlamydia pneumoniae ct642 hypothetical protein SWALL:Q9Z7D6 (EMBL:AE001658) (264 aa) fasta scores: E(): 5.4e-72, 65.53% id in 264 aa; hypothetical protein complement(1117482..1118279) Chlamydophila abortus S26/3 3337951 YP_220342.1 CDS topA NC_004552.2 1118928 1121546 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I/SWI domain fusion protein 1118928..1121546 Chlamydophila abortus S26/3 3338219 YP_220343.1 CDS CAB959 NC_004552.2 1121492 1122511 R Contains Pfam match to entry PF01207 UPF0034, Dihydrouridine synthase (Dus, involved in tRNA modification), score 222.9, E-value 3e-64. Similar to Chlamydia trachomatis predicted oxidoreductase SWALL:O84650 (EMBL:AE001335) (334 aa) fasta scores: E(): 7.8e-97, 76.59% id in 329 aa, and to Thermoanaerobacter tengcongensis predicted TIM-barrel enzymes, possibly dehydrogenases, NifR3 family Tte0344 SWALL:Q8RCR8 (EMBL:AE013007) (322 aa) fasta scores: E(): 5.1e-36, 37.42% id in 318 aa; dihydrouridine synthase complement(1121492..1122511) Chlamydophila abortus S26/3 3337952 YP_220344.1 CDS CAB960 NC_004552.2 1122490 1122786 R Similar to Chlamydia muridarum hypothetical protein Tc0014 SWALL:Q9PLT1 (EMBL:AE002270) (98 aa) fasta scores: E(): 1.1e-30, 66.32% id in 98 aa, and to Bacillus halodurans hypothetical protein Bh2548 SWALL:Q9K9U7 (EMBL:AP001515) (84 aa) fasta scores: E(): 6.9e-09, 48.38% id in 62 aa; hypothetical protein complement(1122490..1122786) Chlamydophila abortus S26/3 3337953 YP_220345.1 CDS CAB961 NC_004552.2 1122884 1124281 D Similar to Chlamydia pneumoniae ct646 hypothetical protein SWALL:Q9Z7E0 (EMBL:AE001658) (463 aa) fasta scores: E(): 1.2e-103, 52.48% id in 463 aa; hypothetical protein 1122884..1124281 Chlamydophila abortus S26/3 3337954 YP_220346.1 CDS CAB962 NC_004552.2 1124278 1124862 D Similar to Chlamydia pneumoniae ct647 hypothetical protein SWALL:Q9Z7E1 (EMBL:AE001658) (194 aa) fasta scores: E(): 3.7e-31, 46.39% id in 194 aa; lipoprotein 1124278..1124862 Chlamydophila abortus S26/3 3337955 YP_220347.1 CDS CAB963 NC_004552.2 1124853 1126130 D Similar to Chlamydia pneumoniae ct648 hypothetical protein SWALL:Q9Z7E2 (EMBL:AE001658) (428 aa) fasta scores: E(): 6.8e-133, 73.95% id in 430 aa; hypothetical protein 1124853..1126130 Chlamydophila abortus S26/3 3337956 YP_220348.1 CDS CAB964 NC_004552.2 1126133 1126675 D Similar to Chlamydia pneumoniae formyltetrahydrofolate cycloligase SWALL:Q9Z7E3 (EMBL:AE001658) (180 aa) fasta scores: E(): 3.2e-32, 52.87% id in 174 aa, and to Aquifex aeolicus hypothetical protein Aq_1731 SWALL:O67621 (EMBL:AE000753) (186 aa) fasta scores: E(): 4.2e-09, 29.41% id in 170 aa, and to Caulobacter crescentus 5-formyltetrahydrofolate cyclo-ligase Cc3245 SWALL:Q9A3F9 (EMBL:AE005988) (214 aa) fasta scores: E(): 6.4e-08, 32.27% id in 189 aa; formyltetrahydrofolate cycloligase 1126133..1126675 Chlamydophila abortus S26/3 3337957 YP_220349.1 CDS recA NC_004552.2 1127088 1128137 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1127088..1128137 Chlamydophila abortus S26/3 3338077 YP_220350.1 CDS CAB966 NC_004552.2 1128190 1128915 R Similar to Chlamydia trachomatis hypothetical protein Ct610 SWALL:O84616 (EMBL:AE001331) (231 aa) fasta scores: E(): 9.8e-62, 71.56% id in 218 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(1128190..1128915) Chlamydophila abortus S26/3 3337958 YP_220351.1 CDS CAB967 NC_004552.2 1128938 1129666 R Similar to Chlamydia pneumoniae ct611 hypothetical protein Cpj0760 SWALL:Q9JSA6 (EMBL:AP002547) (246 aa) fasta scores: E(): 7.4e-64, 63.48% id in 241 aa, and to Methanosarcina acetivorans hypothetical protein Ma3512 SWALL:Q8TKA2 (EMBL:AE011060) (268 aa) fasta scores: E(): 1.4e-16, 36.52% id in 230 aa; hypothetical protein complement(1128938..1129666) Chlamydophila abortus S26/3 3337959 YP_220352.1 CDS folA NC_004552.2 1129638 1130126 R Similar to Staphylococcus haemolyticus dihydrofolate reductase DfrD SWALL:DYR_STAHA (SWALL:Q54277) (166 aa) fasta scores: E(): 5.6e-12, 31.64% id in 158 aa, and to Chlamydia pneumoniae dihydrofolate reductase FolA SWALL:Q9Z7E7 (EMBL:AE001657) (170 aa) fasta scores: E(): 2.2e-34, 54.71% id in 159 aa; dihydrofolate reductase complement(1129638..1130126) Chlamydophila abortus S26/3 3338047 YP_220353.1 CDS folKP NC_004552.2 1130119 1131462 R Similar to Chlamydia pneumoniae folate synthesis bifunctional protein [includes: 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) (7,8- dihydro-6-hydroxymethylpterin-pyrophosphokinase) (HppK) (6- hydroxymethyl-7,8-dihydropterin pyrophosphokinase) (PppK); dihydropteroate synthase (EC 2.5.1.15) (dhps) (dihydropteroate pyrophosphorylase)] FolKP or FolP SWALL:FOKP_CHLPN (SWALL:Q9Z7E8) (450 aa) fasta scores: E(): 2.4e-110, 61.17% id in 443 aa, and to Pneumocystis carinii folic acid synthesis protein [includes: dihydroneopterin aldolase (EC 4.1.2.25) (DhnA) (FasA); FasB; dihydropteroate synthase (EC 2.5.1.15) (DhpS) (dihydropteroate pyrophosphorylase) (FasC); 2- amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) (7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase) (HppK) (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase) (PppK) (FasC)] Fas SWALL:FAS_PNECA (SWALL:P29251) (740 aa) fasta scores: E(): 1.2e-21, 28.9% id in 467 aa; folate synthesis bifunctional protein complement(1130119..1131462) Chlamydophila abortus S26/3 3338049 YP_220354.1 CDS sigA NC_004552.2 1131869 1133584 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor complement(1131869..1133584) Chlamydophila abortus S26/3 3338206 YP_220355.1 CDS CAB972 NC_004552.2 1133695 1134900 R Similar to Chlamydia pneumoniae ct616 hypothetical protein SWALL:Q9Z7F1 (EMBL:AE001657) (401 aa) fasta scores: E(): 4.3e-84, 65.08% id in 401 aa, and to Streptococcus pyogenes virulence factor-related M protein precursor EnnX SWALL:MX_STRPY (SWALL:P16946) (369 aa) fasta scores: E(): 0.076, 22.68% id in 238 aa; hypothetical protein complement(1133695..1134900) Chlamydophila abortus S26/3 3337960 YP_220356.1 CDS rpsT NC_004552.2 1135184 1135480 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1135184..1135480 Chlamydophila abortus S26/3 3338121 YP_220357.1 CDS CAB974 NC_004552.2 1135500 1136333 D Similar to Chlamydia pneumoniae hypothetical protein Cpn0753 SWALL:Q9Z7F3 (EMBL:AE001657) (282 aa) fasta scores: E(): 2.6e-12, 30.85% id in 269 aa; hypothetical protein 1135500..1136333 Chlamydophila abortus S26/3 3337961 YP_220358.1 CDS recD NC_004552.2 1136343 1137857 R Similar to Escherichia coli exodeoxyribonuclease V alpha chain recD SWALL:EX5A_ECOLI (SWALL:P04993) (608 aa) fasta scores: E(): 9.3e-05, 25.33% id in 592 aa, and to Chlamydia pneumoniae exodeoxyribonuclease V SWALL:Q9JRZ2 (EMBL:AE002268) (493 aa) fasta scores: E(): 2.9e-108, 56.7% id in 492 aa; exodeoxyribonuclease V subunit alpha complement(1136343..1137857) Chlamydophila abortus S26/3 3338078 YP_220359.1 CDS CAB976 NC_004552.2 1137872 1139716 R Similar to Chlamydia pneumoniae Ct651 hypothetical protein SWALL:Q9Z7F5 (EMBL:AE001657) (609 aa) fasta scores: E(): 1.3e-116, 49.34% id in 612 aa; hypothetical protein complement(1137872..1139716) Chlamydophila abortus S26/3 3337962 YP_220360.1 CDS CAB977 NC_004552.2 1139912 1140625 D Similar to Chlamydia pneumoniae HTH transcriptional regulatory protein + receiver doman TctD SWALL:Q9Z7F6 (EMBL:AE001656) (235 aa) fasta scores: E(): 8.4e-60, 67.24% id in 232 aa, and to Lactococcus lactis two-component system regulator LlrA or ll1594 SWALL:Q9CF87 (EMBL:AE006390) (230 aa) fasta scores: E(): 4.6e-09, 27.39% id in 230 aa, and to Salmonella typhimurium transcriptional regulatory protein TctD or stm2785 SWALL:TCTD_SALTY (SWALL:P22104) (224 aa) fasta scores: E(): 1.7e-07, 31.69% id in 142 aa; transcriptional regulator 1139912..1140625 Chlamydophila abortus S26/3 3337963 YP_220361.1 CDS CAB978 NC_004552.2 1140685 1141299 D Similar to C-terminal region of Escherichia coli bifunctional GlmU protein [includes: N-terminal UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) and glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.57)] SWALL:GLMU_ECOLI (SWALL:P17114) (456 aa) fasta scores: E(): 2.1e-06, 29.32% id in 208 aa, and to Sulfolobus tokodaii glucose-1-phosphate thymidylyltransferase St0452 SWALL:Q975F9 (EMBL:AP000982) (401 aa) fasta scores: E(): 1.2e-18, 38.54% id in 179 aa; glucosamine-1-phosphate N-acetyltransferase 1140685..1141299 Chlamydophila abortus S26/3 3337964 YP_220362.1 CDS ispA NC_004552.2 1141316 1142197 D Similar to Chlamydia trachomatis geranylgeranyl pyrophosphate synthase IspA or ct628 SWALL:O84633 (EMBL:AE001333) (291 aa) fasta scores: E(): 2.9e-62, 58.51% id in 282 aa, and to Escherichia coli geranyltranstransferase IspA or b0421 SWALL:ISPA_ECOLI (SWALL:P22939) (299 aa) fasta scores: E(): 2.8e-20, 35.29% id in 272 aa; geranylgeranyl pyrophosphate synthase 1141316..1142197 Chlamydophila abortus S26/3 3337978 YP_220363.1 CDS CAB980 NC_004552.2 1142302 1142556 R Similar to Chlamydia muridarum hypothetical protein Tc0920 SWALL:Q9PJB2 (EMBL:AE002358) (84 aa) fasta scores: E(): 3.8e-27, 84.52% id in 84 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein complement(1142302..1142556) Chlamydophila abortus S26/3 3337965 YP_220364.1 CDS CAB981 NC_004552.2 1142639 1144231 R Similar to others from Chlamydia eg. Chlamydia trachomatis protein Ct632 SWALL:Y632_CHLTR (SWALL:O84637) (529 aa) fasta scores: E(): 7e-170, 78.45% id in 529 aa; hypothetical protein complement(1142639..1144231) Chlamydophila abortus S26/3 3337966 CABt01 tRNA tRNA-Ala NC_004552.2 5306 5378 R tRNA-Ala complement(5306..5378) Chlamydophila abortus S26/3 3337500 CABt02 tRNA tRNA-Arg NC_004552.2 31825 31897 D tRNA-Arg 31825..31897 Chlamydophila abortus S26/3 3337502 CABt03 tRNA tRNA-Thr NC_004552.2 52289 52361 D tRNA-Thr 52289..52361 Chlamydophila abortus S26/3 3338224 CABt04 tRNA tRNA-Lys NC_004552.2 54461 54533 R tRNA-Lys complement(54461..54533) Chlamydophila abortus S26/3 3337520 CABt05 tRNA tRNA-Glu NC_004552.2 54560 54634 R tRNA-Glu complement(54560..54634) Chlamydophila abortus S26/3 3337510 CABt06 tRNA tRNA-Gly NC_004552.2 57797 57867 R tRNA-Gly complement(57797..57867) Chlamydophila abortus S26/3 3337512 CABt07 tRNA tRNA-Leu NC_004552.2 98529 98612 R tRNA-Leu complement(98529..98612) Chlamydophila abortus S26/3 3337517 CABt08 tRNA tRNA-Leu NC_004552.2 122658 122740 D tRNA-Leu 122658..122740 Chlamydophila abortus S26/3 3337515 CABt09 tRNA tRNA-Ser NC_004552.2 130402 130489 D tRNA-Ser 130402..130489 Chlamydophila abortus S26/3 3337527 CABt10 tRNA tRNA-Leu NC_004552.2 160175 160256 D tRNA-Leu 160175..160256 Chlamydophila abortus S26/3 3337516 CABt11 tRNA tRNA-Arg NC_004552.2 162971 163044 R tRNA-Arg complement(162971..163044) Chlamydophila abortus S26/3 3337503 CABt12 tRNA tRNA-Leu NC_004552.2 168996 169078 R tRNA-Leu complement(168996..169078) Chlamydophila abortus S26/3 3337518 CABt13 tRNA tRNA-Phe NC_004552.2 210853 210925 D tRNA-Phe 210853..210925 Chlamydophila abortus S26/3 3337524 CABt14 tRNA tRNA-Ser NC_004552.2 215320 215409 D tRNA-Ser 215320..215409 Chlamydophila abortus S26/3 3337528 CABt15 tRNA tRNA-Ser NC_004552.2 345809 345898 R tRNA-Ser complement(345809..345898) Chlamydophila abortus S26/3 3338222 CABt16 tRNA tRNA-Arg NC_004552.2 421558 421631 R tRNA-Arg complement(421558..421631) Chlamydophila abortus S26/3 3337504 CABt17 tRNA tRNA-Pro NC_004552.2 475646 475720 R tRNA-Pro complement(475646..475720) Chlamydophila abortus S26/3 3337525 CABt18 tRNA tRNA-Asp NC_004552.2 584029 584102 R tRNA-Asp complement(584029..584102) Chlamydophila abortus S26/3 3337507 CABt19 tRNA tRNA-Val NC_004552.2 584106 584178 R tRNA-Val complement(584106..584178) Chlamydophila abortus S26/3 3338230 CABt20 tRNA tRNA-Thr NC_004552.2 586877 586949 D tRNA-Thr 586877..586949 Chlamydophila abortus S26/3 3338225 CABt21 tRNA tRNA-Tyr NC_004552.2 586956 587038 D tRNA-Tyr 586956..587038 Chlamydophila abortus S26/3 3338228 CABt22 tRNA tRNA-Ile NC_004552.2 642756 642829 R tRNA-Ile complement(642756..642829) Chlamydophila abortus S26/3 3337514 CABt23 tRNA tRNA-Ala NC_004552.2 642835 642907 R tRNA-Ala complement(642835..642907) Chlamydophila abortus S26/3 3337501 CABt24 tRNA tRNA-Met NC_004552.2 663519 663592 R tRNA-Met complement(663519..663592) Chlamydophila abortus S26/3 3337522 CABt25 tRNA tRNA-Met NC_004552.2 663613 663685 R tRNA-Met complement(663613..663685) Chlamydophila abortus S26/3 3337523 CABt26 tRNA tRNA-Asn NC_004552.2 708361 708432 D tRNA-Asn 708361..708432 Chlamydophila abortus S26/3 3337506 CABt27 tRNA tRNA-Trp NC_004552.2 777344 777416 R tRNA-Trp complement(777344..777416) Chlamydophila abortus S26/3 3338227 CABt28 tRNA tRNA-Thr NC_004552.2 778699 778770 R tRNA-Thr complement(778699..778770) Chlamydophila abortus S26/3 3338226 CABt29 tRNA tRNA-Met NC_004552.2 780865 780937 D tRNA-Met 780865..780937 Chlamydophila abortus S26/3 3337521 CABt30 tRNA tRNA-Leu NC_004552.2 816725 816806 R tRNA-Leu complement(816725..816806) Chlamydophila abortus S26/3 3337519 CABt31 tRNA tRNA-Ser NC_004552.2 850861 850945 R tRNA-Ser complement(850861..850945) Chlamydophila abortus S26/3 3338223 CABt32 tRNA tRNA-Val NC_004552.2 855534 855607 D tRNA-Val 855534..855607 Chlamydophila abortus S26/3 3338229 CABt33 tRNA tRNA-Gln NC_004552.2 916824 916895 R tRNA-Gln complement(916824..916895) Chlamydophila abortus S26/3 3337509 CABt34 tRNA tRNA-Cys NC_004552.2 966338 966408 D tRNA-Cys 966338..966408 Chlamydophila abortus S26/3 3337508 CABt35 tRNA tRNA-His NC_004552.2 997618 997691 D tRNA-His 997618..997691 Chlamydophila abortus S26/3 3337513 CABt36 tRNA tRNA-Gly NC_004552.2 1035730 1035801 D tRNA-Gly 1035730..1035801 Chlamydophila abortus S26/3 3337511 CABt37 tRNA tRNA-Arg NC_004552.2 1109220 1109292 R tRNA-Arg complement(1109220..1109292) Chlamydophila abortus S26/3 3337505 CABt38 tRNA tRNA-Pro NC_004552.2 1142217 1142290 R tRNA-Pro complement(1142217..1142290) Chlamydophila abortus S26/3 3337526 CABr01 rRNA CABr01 NC_004552.2 991842 991958 R 5S ribosomal RNA complement(991842..991958) Chlamydophila abortus S26/3 3337969 CABr02 rRNA CABr02 NC_004552.2 992074 995019 R 23S ribosomal RNA complement(992074..995019) Chlamydophila abortus S26/3 3337968 CABr03 rRNA CABr03 NC_004552.2 995242 996789 R 16S ribosomal RNA complement(995242..996789) Chlamydophila abortus S26/3 3337967