-- dump date 20140619_040258 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type NP_828876.1 29839770 1217750 57..1052 1 NC_003361.3 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1052 hemB 1217750 hemB Chlamydophila caviae GPIC delta-aminolevulinic acid dehydratase NP_828876.1 57 D 227941 CDS NP_828877.1 29839771 1217751 complement(1068..2480) 1 NC_003361.3 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 2480 nqrA 1217751 nqrA Chlamydophila caviae GPIC Na(+)-translocating NADH-quinone reductase subunit A NP_828877.1 1068 R 227941 CDS NP_828878.1 29839772 1217752 complement(2502..2936) 1 NC_003361.3 hypothetical protein 2936 1217752 CCA00003 Chlamydophila caviae GPIC hypothetical protein NP_828878.1 2502 R 227941 CDS NP_828879.1 29839773 1217753 3048..5201 1 NC_003361.3 contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation; transcript cleavage factor/unknown domain fusion protein 5201 greA 1217753 greA Chlamydophila caviae GPIC transcript cleavage factor/unknown domain fusion protein NP_828879.1 3048 D 227941 CDS NP_828880.1 29839774 1217754 5353..6543 1 NC_003361.3 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 6543 1217754 CCA00005 Chlamydophila caviae GPIC aromatic amino acid aminotransferase NP_828880.1 5353 D 227941 CDS NP_828881.1 29839775 1217755 6839..7861 1 NC_003361.3 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 7861 1217755 CCA00006 Chlamydophila caviae GPIC rod shape-determining protein MreC NP_828881.1 6839 D 227941 CDS NP_828882.1 29839776 1217756 complement(7821..10958) 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR01866; exodeoxyribonuclease V subunit beta 10958 recB 1217756 recB Chlamydophila caviae GPIC exodeoxyribonuclease V subunit beta NP_828882.1 7821 R 227941 CDS NP_828883.1 29839777 1217757 complement(10945..14010) 1 NC_003361.3 similar to GB:L25079, SP:P42822, and PID:529423; identified by sequence similarity; exodeoxyribonuclease V subunit gamma 14010 recC 1217757 recC Chlamydophila caviae GPIC exodeoxyribonuclease V subunit gamma NP_828883.1 10945 R 227941 CDS NP_828884.1 29839778 1217758 14009..15721 1 NC_003361.3 identified by match to PFAM protein family HMM PF02405; efflux protein 15721 1217758 CCA00009 Chlamydophila caviae GPIC efflux protein NP_828884.1 14009 D 227941 CDS NP_828885.1 29839779 1217759 complement(15743..16738) 1 NC_003361.3 similar to SP:P13128, GB:X15127, and GB:X60035; identified by sequence similarity; hypothetical protein 16738 1217759 CCA00010 Chlamydophila caviae GPIC hypothetical protein NP_828885.1 15743 R 227941 CDS NP_828886.1 29839780 1217760 16965..17594 1 NC_003361.3 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 17594 rpsD 1217760 rpsD Chlamydophila caviae GPIC 30S ribosomal protein S4 NP_828886.1 16965 D 227941 CDS NP_828887.1 29839781 1217761 complement(17659..18528) 1 NC_003361.3 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 18528 nfo 1217761 nfo Chlamydophila caviae GPIC endonuclease IV NP_828887.1 17659 R 227941 CDS NP_828888.1 29839782 1217762 18594..20237 1 NC_003361.3 similar to GP:7190941; identified by sequence similarity; hypothetical protein 20237 1217762 CCA00013 Chlamydophila caviae GPIC hypothetical protein NP_828888.1 18594 D 227941 CDS NP_828889.1 29839783 1217763 20346..21614 1 NC_003361.3 similar to SP:P14916, GB:X17079, PID:149010, PID:43634, PID:1567116, PID:2313154, SP:P14916, GB:X17079, PID:149010, PID:43634, PID:1567116, and PID:2313154; identified by sequence similarity; hypothetical protein 21614 1217763 CCA00014 Chlamydophila caviae GPIC hypothetical protein NP_828889.1 20346 D 227941 CDS NP_828890.1 29839784 1217764 21725..23635 1 NC_003361.3 similar to SP:P14916, GB:X17079, PID:149010, PID:43634, PID:1567116, PID:2313154, SP:P14916, GB:X17079, PID:149010, PID:43634, PID:1567116, and PID:2313154; identified by sequence similarity; hypothetical protein 23635 1217764 CCA00015 Chlamydophila caviae GPIC hypothetical protein NP_828890.1 21725 D 227941 CDS NP_828891.1 29839785 1217765 complement(23820..26432) 1 NC_003361.3 similar to SP:Q03523, GB:Z25865, and GB:Z15056; identified by sequence similarity; hypothetical protein 26432 1217765 CCA00016 Chlamydophila caviae GPIC hypothetical protein NP_828891.1 23820 R 227941 CDS NP_828892.1 29839786 1217686 26634..29150 1 NC_003361.3 similar to GP:8979098; identified by sequence similarity; hypothetical protein 29150 1217686 CCA00017 Chlamydophila caviae GPIC hypothetical protein NP_828892.1 26634 D 227941 CDS NP_828893.1 29839787 1217687 29189..29419 1 NC_003361.3 similar to SP:Q03523, GB:Z25865, and GB:Z15056; identified by sequence similarity; hypothetical protein 29419 1217687 CCA00018 Chlamydophila caviae GPIC hypothetical protein NP_828893.1 29189 D 227941 CDS NP_828894.1 29839788 1217688 complement(29416..30138) 1 NC_003361.3 similar to SP:Q03523, GB:Z25865, and GB:Z15056; identified by sequence similarity; ABC transporter ATP-binding protein 30138 1217688 CCA00019 Chlamydophila caviae GPIC ABC transporter ATP-binding protein NP_828894.1 29416 R 227941 CDS NP_828895.1 29839789 1217689 complement(30144..30629) 1 NC_003361.3 similar to GB:D26185, SP:P23261, GB:M58592, PID:143664, PID:467338, and GB:AL009126; identified by sequence similarity; hypothetical protein 30629 1217689 CCA00020 Chlamydophila caviae GPIC hypothetical protein NP_828895.1 30144 R 227941 CDS NP_828896.1 29839790 1217690 complement(30626..31435) 1 NC_003361.3 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 31435 kdsA 1217690 kdsA Chlamydophila caviae GPIC 2-dehydro-3-deoxyphosphooctonate aldolase NP_828896.1 30626 R 227941 CDS NP_828897.1 29839791 1217691 complement(31875..32111) 1 NC_003361.3 similar to GB:L07795, and PID:148862; identified by sequence similarity; hypothetical protein 32111 1217691 CCA00022 Chlamydophila caviae GPIC hypothetical protein NP_828897.1 31875 R 227941 CDS NP_828898.1 29839792 1217693 complement(33445..33753) 1 NC_003361.3 hypothetical protein 33753 1217693 CCA00024 Chlamydophila caviae GPIC hypothetical protein NP_828898.1 33445 R 227941 CDS NP_828899.1 29839793 1217694 complement(33755..34048) 1 NC_003361.3 hypothetical protein 34048 1217694 CCA00025 Chlamydophila caviae GPIC hypothetical protein NP_828899.1 33755 R 227941 CDS NP_828900.1 29839794 1217695 complement(34161..35600) 1 NC_003361.3 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 35600 1217695 CCA00026 Chlamydophila caviae GPIC DNA topoisomerase IV subunit A NP_828900.1 34161 R 227941 CDS NP_828901.1 29839795 1217696 complement(35604..37412) 1 NC_003361.3 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 37412 1217696 CCA00027 Chlamydophila caviae GPIC DNA topoisomerase IV subunit B NP_828901.1 35604 R 227941 CDS NP_828902.1 29839796 1217697 37967..38983 1 NC_003361.3 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 38983 hemA 1217697 hemA Chlamydophila caviae GPIC glutamyl-tRNA reductase NP_828902.1 37967 D 227941 CDS NP_828903.1 29839797 1217698 39330..39734 1 NC_003361.3 identified by match to PFAM protein family HMM PF02639; hypothetical protein 39734 1217698 CCA00029 Chlamydophila caviae GPIC hypothetical protein NP_828903.1 39330 D 227941 CDS NP_828904.1 29839798 1217699 39754..42231 1 NC_003361.3 identified by match to PFAM protein family HMM PF04203; FHA domain-containing protein 42231 1217699 CCA00030 Chlamydophila caviae GPIC FHA domain-containing protein NP_828904.1 39754 D 227941 CDS NP_828905.1 29839799 1217700 42278..42529 1 NC_003361.3 hypothetical protein 42529 1217700 CCA00031 Chlamydophila caviae GPIC hypothetical protein NP_828905.1 42278 D 227941 CDS NP_828906.1 29839800 1217701 42553..42813 1 NC_003361.3 hypothetical protein 42813 1217701 CCA00032 Chlamydophila caviae GPIC hypothetical protein NP_828906.1 42553 D 227941 CDS NP_828907.1 29839801 1217702 42832..43281 1 NC_003361.3 hypothetical protein 43281 1217702 CCA00033 Chlamydophila caviae GPIC hypothetical protein NP_828907.1 42832 D 227941 CDS NP_828908.1 29839802 1217703 43325..43993 1 NC_003361.3 hypothetical protein 43993 1217703 CCA00034 Chlamydophila caviae GPIC hypothetical protein NP_828908.1 43325 D 227941 CDS NP_828909.1 29839803 1217704 43995..45323 1 NC_003361.3 similar to GB:Z33880, and PID:535939; identified by sequence similarity; type III secretion system ATPase 45323 sctN 1217704 sctN Chlamydophila caviae GPIC type III secretion system ATPase NP_828909.1 43995 D 227941 CDS NP_828910.1 29839804 1217705 45344..45862 1 NC_003361.3 similar to GB:Z33880, and PID:535939; identified by sequence similarity; hypothetical protein 45862 1217705 CCA00036 Chlamydophila caviae GPIC hypothetical protein NP_828910.1 45344 D 227941 CDS NP_828911.1 29839805 1217706 45853..46701 1 NC_003361.3 identified by match to PFAM protein family HMM PF02563; hypothetical protein 46701 1217706 CCA00037 Chlamydophila caviae GPIC hypothetical protein NP_828911.1 45853 D 227941 CDS NP_828912.1 29839806 1217707 46714..47829 1 NC_003361.3 identified by match to PFAM protein family HMM PF01052; type III secretion system protein 47829 sctQ 1217707 sctQ Chlamydophila caviae GPIC type III secretion system protein NP_828912.1 46714 D 227941 CDS NP_828913.1 29839807 1217708 47847..49352 1 NC_003361.3 identified by match to PFAM protein family HMM PF02958; serine/threonine-protein kinase 49352 pkn5 1217708 pkn5 Chlamydophila caviae GPIC serine/threonine-protein kinase NP_828913.1 47847 D 227941 CDS NP_828914.1 29839808 1217709 49349..52078 1 NC_003361.3 identified by match to PFAM protein family HMM PF02484; type III secretion protein SctC 52078 sctC 1217709 sctC Chlamydophila caviae GPIC type III secretion protein SctC NP_828914.1 49349 D 227941 CDS NP_828915.1 29839809 1217710 complement(52707..53783) 1 NC_003361.3 identified by match to PFAM protein family HMM PF04122; ATP:guanido phosphotransferase 53783 1217710 CCA00041 Chlamydophila caviae GPIC ATP:guanido phosphotransferase NP_828915.1 52707 R 227941 CDS NP_828916.1 29839810 1217711 complement(53767..54285) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02151; hypothetical protein 54285 1217711 CCA00042 Chlamydophila caviae GPIC hypothetical protein NP_828916.1 53767 R 227941 CDS NP_828917.1 29839811 1217712 complement(54691..55233) 1 NC_003361.3 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 55233 frr 1217712 frr Chlamydophila caviae GPIC ribosome recycling factor NP_828917.1 54691 R 227941 CDS NP_828918.1 29839812 1217713 complement(55235..55957) 1 NC_003361.3 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 55957 pyrH 1217713 pyrH Chlamydophila caviae GPIC uridylate kinase NP_828918.1 55235 R 227941 CDS NP_828919.1 29839813 1217714 complement(55973..56821) 1 NC_003361.3 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 56821 tsf 1217714 tsf Chlamydophila caviae GPIC elongation factor Ts NP_828919.1 55973 R 227941 CDS NP_828920.1 29839814 1217715 complement(56821..57651) 1 NC_003361.3 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 57651 rpsB 1217715 rpsB Chlamydophila caviae GPIC 30S ribosomal protein S2 NP_828920.1 56821 R 227941 CDS NP_828921.1 29839815 1217716 complement(58028..59197) 1 NC_003361.3 similar to PIR:A60109; identified by sequence similarity; major outer membrane protein, porin 59197 ompA 1217716 ompA Chlamydophila caviae GPIC major outer membrane protein, porin NP_828921.1 58028 R 227941 CDS NP_828922.1 29839816 1217717 59801..63076 1 NC_003361.3 similar to GB:S85353, PID:246437, GB:J02938, GB:U13680, GB:X15954, GB:X15957, SP:P07864, PID:187074, PID:307120, and PID:535360; identified by sequence similarity; PBP2-transglycosylase/transpeptidase 63076 pbp2 1217717 pbp2 Chlamydophila caviae GPIC PBP2-transglycosylase/transpeptidase NP_828922.1 59801 D 227941 CDS NP_828923.1 29839817 1217718 63144..64151 1 NC_003361.3 similar to GB:D28770, PID:523232, PID:523234, and PID:2335043; identified by sequence similarity; type III secretion chaperone 64151 1217718 CCA00049 Chlamydophila caviae GPIC type III secretion chaperone NP_828923.1 63144 D 227941 CDS NP_828924.1 29839818 1217719 64506..65960 1 NC_003361.3 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase 65960 1217719 CCA00050 Chlamydophila caviae GPIC cysteine desulfurase NP_828924.1 64506 D 227941 CDS NP_828925.1 29839819 1217720 65964..66731 1 NC_003361.3 similar to GB:D28770, PID:523232, PID:523234, and PID:2335043; identified by sequence similarity; ABC transporter ATP-binding protein 66731 1217720 CCA00051 Chlamydophila caviae GPIC ABC transporter ATP-binding protein NP_828925.1 65964 D 227941 CDS NP_828926.1 29839820 1217721 66733..68007 1 NC_003361.3 identified by match to PFAM protein family HMM PF01458; hypothetical protein 68007 1217721 CCA00052 Chlamydophila caviae GPIC hypothetical protein NP_828926.1 66733 D 227941 CDS NP_828927.1 29839821 1217722 67997..69217 1 NC_003361.3 similar to GB:X77864, PID:951038, and PID:1333728; identified by sequence similarity; class V aminotransferase 69217 b1680 1217722 b1680 Chlamydophila caviae GPIC class V aminotransferase NP_828927.1 67997 D 227941 CDS NP_828928.1 29839822 1217723 complement(69220..69999) 1 NC_003361.3 similar to GB:X77864, PID:951038, and PID:1333728; identified by sequence similarity; hypothetical protein 69999 1217723 CCA00054 Chlamydophila caviae GPIC hypothetical protein NP_828928.1 69220 R 227941 CDS NP_828929.1 29839823 1217724 complement(70193..70846) 1 NC_003361.3 similar to GB:X77864, PID:951038, and PID:1333728; identified by sequence similarity; hypothetical protein 70846 1217724 CCA00055 Chlamydophila caviae GPIC hypothetical protein NP_828929.1 70193 R 227941 CDS NP_828930.1 29839824 1217725 71087..71920 1 NC_003361.3 similar to GB:X77864, PID:951038, and PID:1333728; identified by sequence similarity; ParB family chromosome partioning protein 71920 parB 1217725 parB Chlamydophila caviae GPIC ParB family chromosome partioning protein NP_828930.1 71087 D 227941 CDS NP_828931.1 29839825 1217726 complement(71959..72927) 1 NC_003361.3 similar to GB:M21161, SP:P13421, and PID:152864; identified by sequence similarity; peptide ABC transporter ATP-binding protein 72927 dppF 1217726 dppF Chlamydophila caviae GPIC peptide ABC transporter ATP-binding protein NP_828931.1 71959 R 227941 CDS NP_828932.1 29839826 1217727 complement(72920..73882) 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR01842; peptide ABC transporter ATP-binding protein 73882 1217727 CCA00058 Chlamydophila caviae GPIC peptide ABC transporter ATP-binding protein NP_828932.1 72920 R 227941 CDS NP_828933.1 29839827 1217728 73936..74610 1 NC_003361.3 similar to GB:M21161, SP:P13421, and PID:152864; identified by sequence similarity; hypothetical protein 74610 1217728 CCA00059 Chlamydophila caviae GPIC hypothetical protein NP_828933.1 73936 D 227941 CDS NP_828934.1 29839828 1217729 74617..75897 1 NC_003361.3 similar to GB:M21161, SP:P13421, and PID:152864; identified by sequence similarity; phosphate permease 75897 1217729 CCA00060 Chlamydophila caviae GPIC phosphate permease NP_828934.1 74617 D 227941 CDS NP_828935.1 29839829 1217730 75935..77146 1 NC_003361.3 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 77146 pgk 1217730 pgk Chlamydophila caviae GPIC phosphoglycerate kinase NP_828935.1 75935 D 227941 CDS NP_828936.1 29839830 1217731 77599..78990 1 NC_003361.3 similar to GB:M88334, SP:P25526, PID:147901, GB:U00096, PID:1789015, GB:M88334, SP:P25526, PID:147901, GB:U00096, and PID:1789015; identified by sequence similarity; hypothetical protein 78990 1217731 CCA00062 Chlamydophila caviae GPIC hypothetical protein NP_828936.1 77599 D 227941 CDS NP_828937.1 29839831 1217732 79009..80226 1 NC_003361.3 similar to GB:M88334, SP:P25526, PID:147901, GB:U00096, and PID:1789015; identified by sequence similarity; hypothetical protein 80226 1217732 CCA00063 Chlamydophila caviae GPIC hypothetical protein NP_828937.1 79009 D 227941 CDS NP_828938.1 29839832 1217733 80322..81476 1 NC_003361.3 similar to GB:M88334, SP:P25526, PID:147901, GB:U00096, and PID:1789015; identified by sequence similarity; hypothetical protein 81476 1217733 CCA00064 Chlamydophila caviae GPIC hypothetical protein NP_828938.1 80322 D 227941 CDS NP_828939.1 29839833 1217734 81600..82715 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR00563; Nol1/Nop2/Sun family protein 82715 1217734 CCA00065 Chlamydophila caviae GPIC Nol1/Nop2/Sun family protein NP_828939.1 81600 D 227941 CDS NP_828940.1 29839834 1217735 complement(82721..83110) 1 NC_003361.3 hypothetical protein 83110 1217735 CCA00066 Chlamydophila caviae GPIC hypothetical protein NP_828940.1 82721 R 227941 CDS NP_828941.1 29839835 1217736 complement(83161..84462) 1 NC_003361.3 similar to GB:M57961, and PID:149570; identified by sequence similarity; D-alanyl-D-alanine carboxypeptidase 84462 1217736 CCA00067 Chlamydophila caviae GPIC D-alanyl-D-alanine carboxypeptidase NP_828941.1 83161 R 227941 CDS NP_828942.1 29839836 1217737 84573..84995 1 NC_003361.3 similar to GB:M57961, and PID:149570; identified by sequence similarity; hypothetical protein 84995 1217737 CCA00068 Chlamydophila caviae GPIC hypothetical protein NP_828942.1 84573 D 227941 CDS NP_828943.1 29839837 1217738 complement(84982..85440) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02518; rsbW protein 85440 1217738 CCA00069 Chlamydophila caviae GPIC rsbW protein NP_828943.1 84982 R 227941 CDS NP_828944.1 29839838 1217739 complement(85409..86008) 1 NC_003361.3 similar to GB:L13940, PID:295432, and SP:P54297; identified by sequence similarity; hypothetical protein 86008 1217739 CCA00070 Chlamydophila caviae GPIC hypothetical protein NP_828944.1 85409 R 227941 CDS NP_828945.1 29839839 1217740 complement(86025..86981) 1 NC_003361.3 similar to GB:L13940, PID:295432, and SP:P54297; identified by sequence similarity; hypothetical protein 86981 1217740 CCA00071 Chlamydophila caviae GPIC hypothetical protein NP_828945.1 86025 R 227941 CDS NP_828946.1 29839840 1217741 87134..88018 1 NC_003361.3 hypothetical protein 88018 1217741 CCA00072 Chlamydophila caviae GPIC hypothetical protein NP_828946.1 87134 D 227941 CDS NP_828947.1 29839841 1217742 complement(88015..91743) 1 NC_003361.3 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 91743 dnaE 1217742 dnaE Chlamydophila caviae GPIC DNA polymerase III subunit alpha NP_828947.1 88015 R 227941 CDS NP_828948.1 29839842 1217743 complement(91769..93136) 1 NC_003361.3 similar to SP:P09836; identified by sequence similarity; sugar phosphate sensor protein UhpC 93136 uhpC 1217743 uhpC Chlamydophila caviae GPIC sugar phosphate sensor protein UhpC NP_828948.1 91769 R 227941 CDS NP_828949.1 29839843 1217744 93368..93586 1 NC_003361.3 hypothetical protein 93586 1217744 CCA00075 Chlamydophila caviae GPIC hypothetical protein NP_828949.1 93368 D 227941 CDS NP_828950.1 29839844 1217745 93655..94947 1 NC_003361.3 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 94947 hisS 1217745 hisS Chlamydophila caviae GPIC histidyl-tRNA synthetase NP_828950.1 93655 D 227941 CDS NP_828951.1 29839845 1217746 94922..96676 1 NC_003361.3 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 96676 aspS 1217746 aspS Chlamydophila caviae GPIC aspartyl-tRNA synthetase NP_828951.1 94922 D 227941 CDS NP_828952.1 29839846 1217747 96752..97519 1 NC_003361.3 similar to GB:U08377, and PID:508231; identified by sequence similarity; peptidyl-prolyl cis-trans isomerase Mip 97519 mip 1217747 mip Chlamydophila caviae GPIC peptidyl-prolyl cis-trans isomerase Mip NP_828952.1 96752 D 227941 CDS NP_828953.1 29839847 1217748 97516..97986 1 NC_003361.3 similar to GB:X78992, SP:P47974, PID:509778, and PID:984509; identified by sequence similarity; RNA methyltransferase 97986 1217748 CCA00079 Chlamydophila caviae GPIC RNA methyltransferase NP_828953.1 97516 D 227941 CDS NP_828954.1 29839848 1217749 complement(97983..98291) 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR00411; thioredoxin 98291 trx 1217749 trx Chlamydophila caviae GPIC thioredoxin NP_828954.1 97983 R 227941 CDS NP_828955.1 29839849 1217766 98417..98515 1 NC_003361.3 hypothetical protein 98515 1217766 CCA00081 Chlamydophila caviae GPIC hypothetical protein NP_828955.1 98417 D 227941 CDS NP_828956.1 29839850 1217767 98701..98856 1 NC_003361.3 hypothetical protein 98856 1217767 CCA00082 Chlamydophila caviae GPIC hypothetical protein NP_828956.1 98701 D 227941 CDS NP_828957.1 29839851 1217768 99311..100027 1 NC_003361.3 similar to GB:M34239, SP:P33119, GB:M80338, PID:144973, PID:144977, GB:M34239, SP:P33119, GB:M80338, PID:144973, and PID:144977; identified by sequence similarity; hypothetical protein 100027 1217768 CCA00083 Chlamydophila caviae GPIC hypothetical protein NP_828957.1 99311 D 227941 CDS NP_828958.1 29839852 1217769 100006..100467 1 NC_003361.3 similar to GB:M34239, SP:P33119, GB:M80338, PID:144973, PID:144977, GB:M34239, SP:P33119, GB:M80338, PID:144973, and PID:144977; identified by sequence similarity; hypothetical protein 100467 1217769 CCA00084 Chlamydophila caviae GPIC hypothetical protein NP_828958.1 100006 D 227941 CDS NP_828959.1 29839853 1217770 100477..101226 1 NC_003361.3 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 101226 dnaQ-1 1217770 dnaQ-1 Chlamydophila caviae GPIC DNA polymerase III subunit epsilon NP_828959.1 100477 D 227941 CDS NP_828960.1 29839854 1217771 101387..101857 1 NC_003361.3 similar to GB:L05176, SP:Q02540, and PID:151181; identified by sequence similarity; cytosolic acyl-CoA thioester hydrolase 101857 1217771 CCA00086 Chlamydophila caviae GPIC cytosolic acyl-CoA thioester hydrolase NP_828960.1 101387 D 227941 CDS NP_828961.1 29839855 1217772 101865..103490 1 NC_003361.3 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 103490 lnt 1217772 lnt Chlamydophila caviae GPIC apolipoprotein N-acyltransferase NP_828961.1 101865 D 227941 CDS NP_828962.1 29839856 1217773 103505..104362 1 NC_003361.3 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 104362 lpxC 1217773 lpxC Chlamydophila caviae GPIC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase NP_828962.1 103505 D 227941 CDS NP_828963.1 29839857 1217774 104377..104841 1 NC_003361.3 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 104841 fabZ 1217774 fabZ Chlamydophila caviae GPIC (3R)-hydroxymyristoyl-ACP dehydratase NP_828963.1 104377 D 227941 CDS NP_828964.1 29839858 1217775 104851..105690 1 NC_003361.3 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 105690 lpxA 1217775 lpxA Chlamydophila caviae GPIC UDP-N-acetylglucosamine acyltransferase NP_828964.1 104851 D 227941 CDS NP_828965.1 29839859 1217776 105677..106642 1 NC_003361.3 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 106642 fmt 1217776 fmt Chlamydophila caviae GPIC methionyl-tRNA formyltransferase NP_828965.1 105677 D 227941 CDS NP_828966.1 29839860 1217777 106758..107732 1 NC_003361.3 similar to GB:X57326, and PID:48151; identified by sequence similarity; hypothetical protein 107732 1217777 CCA00092 Chlamydophila caviae GPIC hypothetical protein NP_828966.1 106758 D 227941 CDS NP_828967.1 29839861 1217778 108028..108693 1 NC_003361.3 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 108693 rplC 1217778 rplC Chlamydophila caviae GPIC 50S ribosomal protein L3 NP_828967.1 108028 D 227941 CDS NP_828968.1 29839862 1217779 108710..109384 1 NC_003361.3 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 109384 rplD 1217779 rplD Chlamydophila caviae GPIC 50S ribosomal protein L4 NP_828968.1 108710 D 227941 CDS NP_828969.1 29839863 1217780 109401..109736 1 NC_003361.3 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 109736 rplW 1217780 rplW Chlamydophila caviae GPIC 50S ribosomal protein L23 NP_828969.1 109401 D 227941 CDS NP_828970.1 29839864 1217781 109758..110612 1 NC_003361.3 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 110612 rplB 1217781 rplB Chlamydophila caviae GPIC 50S ribosomal protein L2 NP_828970.1 109758 D 227941 CDS NP_828971.1 29839865 1217782 110618..110884 1 NC_003361.3 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 110884 rpsS 1217782 rpsS Chlamydophila caviae GPIC 30S ribosomal protein S19 NP_828971.1 110618 D 227941 CDS NP_828972.1 29839866 1217783 110903..111238 1 NC_003361.3 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 111238 rplV 1217783 rplV Chlamydophila caviae GPIC 50S ribosomal protein L22 NP_828972.1 110903 D 227941 CDS NP_828973.1 29839867 1217784 111247..111918 1 NC_003361.3 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 111918 rpsC 1217784 rpsC Chlamydophila caviae GPIC 30S ribosomal protein S3 NP_828973.1 111247 D 227941 CDS NP_828974.1 29839868 1217785 111945..112361 1 NC_003361.3 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 112361 rplP 1217785 rplP Chlamydophila caviae GPIC 50S ribosomal protein L16 NP_828974.1 111945 D 227941 CDS NP_828975.1 29839869 1217786 112367..112585 1 NC_003361.3 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 112585 rpmC 1217786 rpmC Chlamydophila caviae GPIC 50S ribosomal protein L29 NP_828975.1 112367 D 227941 CDS NP_828976.1 29839870 1217787 112578..112829 1 NC_003361.3 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 112829 rpsQ 1217787 rpsQ Chlamydophila caviae GPIC 30S ribosomal protein S17 NP_828976.1 112578 D 227941 CDS NP_828977.1 29839871 1217788 112864..113232 1 NC_003361.3 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 113232 rplN 1217788 rplN Chlamydophila caviae GPIC 50S ribosomal protein L14 NP_828977.1 112864 D 227941 CDS NP_828978.1 29839872 1217789 113247..113588 1 NC_003361.3 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 113588 rplX 1217789 rplX Chlamydophila caviae GPIC 50S ribosomal protein L24 NP_828978.1 113247 D 227941 CDS NP_828979.1 29839873 1217790 113590..114132 1 NC_003361.3 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 114132 rplE 1217790 rplE Chlamydophila caviae GPIC 50S ribosomal protein L5 NP_828979.1 113590 D 227941 CDS NP_828980.1 29839874 1217791 114151..114552 1 NC_003361.3 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 114552 rpsH 1217791 rpsH Chlamydophila caviae GPIC 30S ribosomal protein S8 NP_828980.1 114151 D 227941 CDS NP_828981.1 29839875 1217792 114584..115135 1 NC_003361.3 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 115135 rplF 1217792 rplF Chlamydophila caviae GPIC 50S ribosomal protein L6 NP_828981.1 114584 D 227941 CDS NP_828982.1 29839876 1217793 115158..115529 1 NC_003361.3 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 115529 rplR 1217793 rplR Chlamydophila caviae GPIC 50S ribosomal protein L18 NP_828982.1 115158 D 227941 CDS NP_828983.1 29839877 1217794 115545..116042 1 NC_003361.3 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 116042 rpsE 1217794 rpsE Chlamydophila caviae GPIC 30S ribosomal protein S5 NP_828983.1 115545 D 227941 CDS NP_828984.1 29839878 1217795 116035..116469 1 NC_003361.3 late assembly protein; 50S ribosomal protein L15 116469 rplO 1217795 rplO Chlamydophila caviae GPIC 50S ribosomal protein L15 NP_828984.1 116035 D 227941 CDS NP_828985.1 29839879 1217796 116494..117867 1 NC_003361.3 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 117867 secY 1217796 secY Chlamydophila caviae GPIC preprotein translocase subunit SecY NP_828985.1 116494 D 227941 CDS NP_828986.1 29839880 1217797 117923..118291 1 NC_003361.3 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 118291 rpsM 1217797 rpsM Chlamydophila caviae GPIC 30S ribosomal protein S13 NP_828986.1 117923 D 227941 CDS NP_828987.1 29839881 1217798 118312..118710 1 NC_003361.3 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 118710 rpsK 1217798 rpsK Chlamydophila caviae GPIC 30S ribosomal protein S11 NP_828987.1 118312 D 227941 CDS NP_828988.1 29839882 1217799 118680..119861 1 NC_003361.3 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 119861 rpoA 1217799 rpoA Chlamydophila caviae GPIC DNA-directed RNA polymerase subunit alpha NP_828988.1 118680 D 227941 CDS NP_828989.1 29839883 1217800 119870..120298 1 NC_003361.3 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 120298 rplQ 1217800 rplQ Chlamydophila caviae GPIC 50S ribosomal protein L17 NP_828989.1 119870 D 227941 CDS NP_828990.1 29839884 1217801 120337..121344 1 NC_003361.3 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 121344 gap 1217801 gap Chlamydophila caviae GPIC glyceraldehyde-3-phosphate dehydrogenase NP_828990.1 120337 D 227941 CDS NP_828991.1 29839885 1217802 121357..122199 1 NC_003361.3 similar to GB:L14017, and PID:295162; identified by sequence similarity; hypothetical protein 122199 1217802 CCA00117 Chlamydophila caviae GPIC hypothetical protein NP_828991.1 121357 D 227941 CDS NP_828992.1 29839886 1217803 122709..123674 1 NC_003361.3 similar to GB:L14017, and PID:295162; identified by sequence similarity; hypothetical protein 123674 1217803 CCA00118 Chlamydophila caviae GPIC hypothetical protein NP_828992.1 122709 D 227941 CDS NP_828993.1 29839887 1217804 123780..124286 1 NC_003361.3 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 124286 ruvC 1217804 ruvC Chlamydophila caviae GPIC Holliday junction resolvase NP_828993.1 123780 D 227941 CDS NP_828994.1 29839888 1217805 124286..124909 1 NC_003361.3 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 124909 ruvA 1217805 ruvA Chlamydophila caviae GPIC Holliday junction DNA helicase RuvA NP_828994.1 124286 D 227941 CDS NP_828995.1 29839889 1217806 124974..125399 1 NC_003361.3 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 125399 ndk 1217806 ndk Chlamydophila caviae GPIC nucleoside diphosphate kinase NP_828995.1 124974 D 227941 CDS NP_828996.1 29839890 1217807 complement(125413..126117) 1 NC_003361.3 similar to SP:P32099, GB:X69957, SP:P43148, and PID:396259; identified by sequence similarity; lipoate-protein ligase A 126117 1217807 CCA00122 Chlamydophila caviae GPIC lipoate-protein ligase A NP_828996.1 125413 R 227941 CDS NP_828997.1 29839891 1217808 complement(126104..127939) 1 NC_003361.3 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 127939 gidA 1217808 gidA Chlamydophila caviae GPIC tRNA uridine 5-carboxymethylaminomethyl modification protein GidA NP_828997.1 126104 R 227941 CDS NP_828998.1 29839892 1217809 complement(128334..129752) 1 NC_003361.3 unwinds double stranded DNA; replicative DNA helicase 129752 dnaB 1217809 dnaB Chlamydophila caviae GPIC replicative DNA helicase NP_828998.1 128334 R 227941 CDS NP_828999.1 29839893 1217810 130414..130920 1 NC_003361.3 similar to GB:D21270, and PID:600252; identified by sequence similarity; CDP-alcohol phosphatidyltransferase 130920 1217810 CCA00125 Chlamydophila caviae GPIC CDP-alcohol phosphatidyltransferase NP_828999.1 130414 D 227941 CDS NP_829000.1 29839894 1217811 131156..132796 1 NC_003361.3 similar to GB:D21270, and PID:600252; identified by sequence similarity; ADP, ATP carrier protein 132796 tlc-1 1217811 tlc-1 Chlamydophila caviae GPIC ADP, ATP carrier protein NP_829000.1 131156 D 227941 CDS NP_829001.1 29839895 1217812 132894..133892 1 NC_003361.3 similar to GB:D21270, and PID:600252; identified by sequence similarity; endopeptidase IV 133892 1217812 CCA00127 Chlamydophila caviae GPIC endopeptidase IV NP_829001.1 132894 D 227941 CDS NP_829002.1 29839896 1217813 133923..136532 1 NC_003361.3 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 136532 polA 1217813 polA Chlamydophila caviae GPIC DNA polymerase I NP_829002.1 133923 D 227941 CDS NP_829003.1 29839897 1217814 136526..137134 1 NC_003361.3 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 137134 coaE 1217814 coaE Chlamydophila caviae GPIC dephospho-CoA kinase NP_829003.1 136526 D 227941 CDS NP_829004.1 29839898 1217815 137131..138525 1 NC_003361.3 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 138525 rho 1217815 rho Chlamydophila caviae GPIC transcription termination factor Rho NP_829004.1 137131 D 227941 CDS NP_829005.1 29839899 1217816 complement(138785..139045) 1 NC_003361.3 similar to GB:M25260, SP:P26778, and PID:304172; identified by sequence similarity; hypothetical protein 139045 1217816 CCA00131 Chlamydophila caviae GPIC hypothetical protein NP_829005.1 138785 R 227941 CDS NP_829006.1 29839900 1217817 139107..139727 1 NC_003361.3 catalyzes the formation of orotidine monophosphate from 5-phosphoribosyl-1-pyrophosphate and orotate; orotate phosphoribosyltransferase 139727 pyrE 1217817 pyrE Chlamydophila caviae GPIC orotate phosphoribosyltransferase NP_829006.1 139107 D 227941 CDS NP_829007.1 29839901 1217818 139864..141192 1 NC_003361.3 similar to GB:M17643, SP:P10728, PID:143614, PID:1303999, and GB:AL009126; identified by sequence similarity; glucose-1-phosphate adenylyltransferase 141192 glgC 1217818 glgC Chlamydophila caviae GPIC glucose-1-phosphate adenylyltransferase NP_829007.1 139864 D 227941 CDS NP_829008.1 29839902 1217819 141307..142050 1 NC_003361.3 identified by match to PFAM protein family HMM PF00149; hypothetical protein 142050 1217819 CCA00134 Chlamydophila caviae GPIC hypothetical protein NP_829008.1 141307 D 227941 CDS NP_829009.1 29839903 1217820 142047..142616 1 NC_003361.3 similar to GP:7190800; identified by sequence similarity; hypothetical protein 142616 1217820 CCA00135 Chlamydophila caviae GPIC hypothetical protein NP_829009.1 142047 D 227941 CDS NP_829010.1 29839904 1217821 142809..143561 1 NC_003361.3 similar to GB:M87483, SP:Q02000, PID:149518, GB:J04088, SP:P11388, and PID:292830; identified by sequence similarity; amino acid-binding protein 143561 1217821 CCA00136 Chlamydophila caviae GPIC amino acid-binding protein NP_829010.1 142809 D 227941 CDS NP_829011.1 29839905 1217822 complement(143566..144522) 1 NC_003361.3 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 144522 hemH 1217822 hemH Chlamydophila caviae GPIC ferrochelatase NP_829011.1 143566 R 227941 CDS NP_829012.1 29839906 1217823 144619..145626 1 NC_003361.3 similar to GB:M87483, SP:Q02000, and PID:149518; identified by sequence similarity; hypothetical protein 145626 1217823 CCA00138 Chlamydophila caviae GPIC hypothetical protein NP_829012.1 144619 D 227941 CDS NP_829013.1 29839907 1217824 145681..146022 1 NC_003361.3 similar to GB:M87483, SP:Q02000, and PID:149518; identified by sequence similarity; hypothetical protein 146022 1217824 CCA00139 Chlamydophila caviae GPIC hypothetical protein NP_829013.1 145681 D 227941 CDS NP_829014.1 29839908 1217825 146094..146300 1 NC_003361.3 hypothetical protein 146300 1217825 CCA00140 Chlamydophila caviae GPIC hypothetical protein NP_829014.1 146094 D 227941 CDS NP_829015.1 29839909 1217826 146811..146975 1 NC_003361.3 hypothetical protein 146975 1217826 CCA00141 Chlamydophila caviae GPIC hypothetical protein NP_829015.1 146811 D 227941 CDS NP_829016.1 29839910 1217827 147733..149850 1 NC_003361.3 similar to SP:P00808, GB:X05798, and GB:V00093; identified by sequence similarity; peptide ABC transporter substrate-binding protein 149850 1217827 CCA00142 Chlamydophila caviae GPIC peptide ABC transporter substrate-binding protein NP_829016.1 147733 D 227941 CDS NP_829017.1 29839911 1217828 149832..151313 1 NC_003361.3 similar to SP:P00808, GB:X05798, and GB:V00093; identified by sequence similarity; peptide ABC transporter permease 151313 1217828 CCA00143 Chlamydophila caviae GPIC peptide ABC transporter permease NP_829017.1 149832 D 227941 CDS NP_829018.1 29839912 1217829 151318..153051 1 NC_003361.3 similar to SP:P00808, GB:X05798, and GB:V00093; identified by sequence similarity; peptide ABC transporter permease 153051 1217829 CCA00144 Chlamydophila caviae GPIC peptide ABC transporter permease NP_829018.1 151318 D 227941 CDS NP_829019.1 29839913 1217830 complement(153048..153575) 1 NC_003361.3 identified by match to PFAM protein family HMM PF01035; DNA methyltransferase 153575 ada 1217830 ada Chlamydophila caviae GPIC DNA methyltransferase NP_829019.1 153048 R 227941 CDS NP_829020.1 29839914 1217831 complement(153590..154561) 1 NC_003361.3 hypothetical protein 154561 1217831 CCA00146 Chlamydophila caviae GPIC hypothetical protein NP_829020.1 153590 R 227941 CDS NP_829021.1 29839915 1217832 complement(154561..156942) 1 NC_003361.3 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 156942 pheT 1217832 pheT Chlamydophila caviae GPIC phenylalanyl-tRNA synthetase subunit beta NP_829021.1 154561 R 227941 CDS NP_829022.1 29839916 1217833 157050..158141 1 NC_003361.3 similar to GB:M22916, GB:L10505, SP:P39790, PID:143210, PID:143702, and GB:AL009126; identified by sequence similarity; LysM domain-containing protein 158141 1217833 CCA00148 Chlamydophila caviae GPIC LysM domain-containing protein NP_829022.1 157050 D 227941 CDS NP_829023.1 29839917 1217834 complement(158065..158376) 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR00278; hypothetical protein 158376 1217834 CCA00149 Chlamydophila caviae GPIC hypothetical protein NP_829023.1 158065 R 227941 CDS NP_829024.1 29839918 1217835 complement(158366..159160) 1 NC_003361.3 similar to GP:7190783, and GP:7190783; identified by sequence similarity; hypothetical protein 159160 1217835 CCA00150 Chlamydophila caviae GPIC hypothetical protein NP_829024.1 158366 R 227941 CDS NP_829025.1 29839919 1217836 159440..160030 1 NC_003361.3 hypothetical protein 160030 1217836 CCA00151 Chlamydophila caviae GPIC hypothetical protein NP_829025.1 159440 D 227941 CDS NP_829026.1 29839920 1217837 complement(160022..160729) 1 NC_003361.3 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 160729 recO 1217837 recO Chlamydophila caviae GPIC DNA repair protein RecO NP_829026.1 160022 R 227941 CDS NP_829027.1 29839921 1217838 complement(160734..161309) 1 NC_003361.3 hypothetical protein 161309 1217838 CCA00153 Chlamydophila caviae GPIC hypothetical protein NP_829027.1 160734 R 227941 CDS NP_829028.1 29839922 1217839 complement(161263..161946) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02482; hypothetical protein 161946 1217839 CCA00154 Chlamydophila caviae GPIC hypothetical protein NP_829028.1 161263 R 227941 CDS NP_829029.1 29839923 1217840 complement(162248..163408) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02889; Fis family transcriptional regulator 163408 1217840 CCA00155 Chlamydophila caviae GPIC Fis family transcriptional regulator NP_829029.1 162248 R 227941 CDS NP_829030.1 29839924 1217841 163591..166611 1 NC_003361.3 identified by match to PFAM protein family HMM PF02486; hypothetical protein 166611 1217841 CCA00156 Chlamydophila caviae GPIC hypothetical protein NP_829030.1 163591 D 227941 CDS NP_829031.1 29839925 1217842 complement(166621..167679) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02518; sensor histidine kinase 167679 1217842 CCA00157 Chlamydophila caviae GPIC sensor histidine kinase NP_829031.1 166621 R 227941 CDS NP_829032.1 29839926 1217843 complement(167660..167986) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03902; hypothetical protein 167986 1217843 CCA00158 Chlamydophila caviae GPIC hypothetical protein NP_829032.1 167660 R 227941 CDS NP_829033.1 29839927 1217844 complement(168215..168922) 1 NC_003361.3 hypothetical protein 168922 1217844 CCA00159 Chlamydophila caviae GPIC hypothetical protein NP_829033.1 168215 R 227941 CDS NP_829034.1 29839928 1217845 169049..169741 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR01548; HAD family hydrolase 169741 1217845 CCA00160 Chlamydophila caviae GPIC HAD family hydrolase NP_829034.1 169049 D 227941 CDS NP_829035.1 29839929 1217847 complement(170487..171131) 1 NC_003361.3 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 171131 ispD 1217847 ispD Chlamydophila caviae GPIC 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NP_829035.1 170487 R 227941 CDS NP_829036.1 29839930 1217848 complement(171115..172089) 1 NC_003361.3 similar to GB:L10328, SP:P04846, GB:M12163, PID:146649, PID:290510, GB:U00096, PID:1790093, GB:L10328, SP:P04846, GB:M12163, PID:146649, PID:290510, GB:U00096, and PID:1790093; identified by sequence similarity; hypothetical protein 172089 1217848 CCA00163 Chlamydophila caviae GPIC hypothetical protein NP_829036.1 171115 R 227941 CDS NP_829037.1 29839931 1217849 complement(172161..172424) 1 NC_003361.3 similar to GB:L10328, SP:P04846, GB:M12163, PID:146649, PID:290510, GB:U00096, and PID:1790093; identified by sequence similarity; BAF60b domain-containing protein 172424 1217849 CCA00164 Chlamydophila caviae GPIC BAF60b domain-containing protein NP_829037.1 172161 R 227941 CDS NP_829038.1 29839932 1217850 172424..172555 1 NC_003361.3 hypothetical protein 172555 1217850 CCA00165 Chlamydophila caviae GPIC hypothetical protein NP_829038.1 172424 D 227941 CDS NP_829039.1 29839933 1217851 172781..173794 1 NC_003361.3 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 173794 prfB 1217851 prfB Chlamydophila caviae GPIC peptide chain release factor 2 NP_829039.1 172781 D 227941 CDS NP_829040.1 29839934 1217852 173791..174303 1 NC_003361.3 similar to GB:L25079, SP:P42822, and PID:529423; identified by sequence similarity; acetyltransferase 174303 yhhY 1217852 yhhY Chlamydophila caviae GPIC acetyltransferase NP_829040.1 173791 D 227941 CDS NP_829041.1 29839935 1217853 174344..174898 1 NC_003361.3 similar to GB:L25079, SP:P42822, PID:529423, GB:L25079, SP:P42822, and PID:529423; identified by sequence similarity; hypothetical protein 174898 1217853 CCA00168 Chlamydophila caviae GPIC hypothetical protein NP_829041.1 174344 D 227941 CDS NP_829042.1 29839936 1217854 174882..175598 1 NC_003361.3 similar to GP:7190771, and GP:7190771; identified by sequence similarity; hypothetical protein 175598 1217854 CCA00169 Chlamydophila caviae GPIC hypothetical protein NP_829042.1 174882 D 227941 CDS NP_829043.1 29839937 1217855 complement(175636..178278) 1 NC_003361.3 similar to GB:L25079, SP:P42822, and PID:529423; identified by sequence similarity; hypothetical protein 178278 1217855 CCA00170 Chlamydophila caviae GPIC hypothetical protein NP_829043.1 175636 R 227941 CDS NP_829044.1 29839938 1217856 178511..179845 1 NC_003361.3 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 179845 murA 1217856 murA Chlamydophila caviae GPIC UDP-N-acetylglucosamine 1-carboxyvinyltransferase NP_829044.1 178511 D 227941 CDS NP_829045.1 29839939 1217857 complement(179848..181542) 1 NC_003361.3 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 181542 argS 1217857 argS Chlamydophila caviae GPIC arginyl-tRNA synthetase NP_829045.1 179848 R 227941 CDS NP_829046.1 29839940 1217858 complement(181542..182189) 1 NC_003361.3 similar to SP:P14916, GB:X17079, PID:149010, PID:43634, PID:1567116, and PID:2313154; identified by sequence similarity; 1-acyl-sn-glycerol-3-phosphate acyltransferase 182189 1217858 CCA00173 Chlamydophila caviae GPIC 1-acyl-sn-glycerol-3-phosphate acyltransferase NP_829046.1 181542 R 227941 CDS NP_829047.1 29839941 1217859 complement(182186..182836) 1 NC_003361.3 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 182836 cmk 1217859 cmk Chlamydophila caviae GPIC cytidylate kinase NP_829047.1 182186 R 227941 CDS NP_829048.1 29839942 1217860 complement(182833..183753) 1 NC_003361.3 similar to SP:Q9Z7Y6; identified by sequence similarity; phosphatidate cytidylyltransferase 183753 1217860 CCA00175 Chlamydophila caviae GPIC phosphatidate cytidylyltransferase NP_829048.1 182833 R 227941 CDS NP_829049.1 29839943 1217861 complement(183756..184508) 1 NC_003361.3 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 184508 uppS 1217861 uppS Chlamydophila caviae GPIC undecaprenyl pyrophosphate synthase NP_829049.1 183756 R 227941 CDS NP_829050.1 29839944 1217862 185126..186229 1 NC_003361.3 similar to SP:Q03523, GB:Z25865, and GB:Z15056; identified by sequence similarity; hypothetical protein 186229 1217862 CCA00177 Chlamydophila caviae GPIC hypothetical protein NP_829050.1 185126 D 227941 CDS NP_829051.1 29839945 1217863 186476..190690 1 NC_003361.3 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; in these organisms there is an unknown N-terminal domain; bifunctional preprotein translocase subunit SecD/SecF 190690 1217863 CCA00178 Chlamydophila caviae GPIC bifunctional preprotein translocase subunit SecD/SecF NP_829051.1 186476 D 227941 CDS NP_829052.1 29839946 1217864 190778..192550 1 NC_003361.3 similar to GP:3063673; identified by sequence similarity; single-stranded-DNA-specific exonuclease RecJ 192550 recJ 1217864 recJ Chlamydophila caviae GPIC single-stranded-DNA-specific exonuclease RecJ NP_829052.1 190778 D 227941 CDS NP_829053.1 29839947 1217865 192991..194145 1 NC_003361.3 similar to GP:1783378, and GP:1783378; identified by sequence similarity; hypothetical protein 194145 1217865 CCA00180 Chlamydophila caviae GPIC hypothetical protein NP_829053.1 192991 D 227941 CDS NP_829054.1 29839948 1217866 194760..195305 1 NC_003361.3 similar to SP:P94661, and SP:P94661; identified by sequence similarity; DNA binding domain-containing protein 195305 1217866 CCA00181 Chlamydophila caviae GPIC DNA binding domain-containing protein NP_829054.1 194760 D 227941 CDS NP_829055.1 29839949 1217867 195577..197094 1 NC_003361.3 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 197094 gltX 1217867 gltX Chlamydophila caviae GPIC glutamyl-tRNA synthetase NP_829055.1 195577 D 227941 CDS NP_829056.1 29839950 1217868 complement(197137..197325) 1 NC_003361.3 similar to GB:L07795, and PID:148862; identified by sequence similarity; hypothetical protein 197325 1217868 CCA00183 Chlamydophila caviae GPIC hypothetical protein NP_829056.1 197137 R 227941 CDS NP_829057.1 29839951 1217869 197747..198013 1 NC_003361.3 similar to GB:X79980, and PID:510454; identified by sequence similarity; small CRP; small cysteine-rich protein; OmcA 198013 omcA 1217869 omcA Chlamydophila caviae GPIC OmcA NP_829057.1 197747 D 227941 CDS NP_829058.1 29839952 1217870 198178..199854 1 NC_003361.3 similar to GB:X79980, and PID:510454; identified by sequence similarity; OmcB; 60 kDa outer membrane protein 199854 omcB 1217870 omcB Chlamydophila caviae GPIC 60 kDa outer membrane protein NP_829058.1 198178 D 227941 CDS NP_829059.1 29839953 1217871 200065..200547 1 NC_003361.3 similar to GB:M81087, SP:P41171, and PID:154675; identified by sequence similarity; hypothetical protein 200547 srp 1217871 srp Chlamydophila caviae GPIC hypothetical protein NP_829059.1 200065 D 227941 CDS NP_829060.1 29839954 1217872 complement(200600..202555) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02692; tail-specific protease 202555 1217872 CCA00187 Chlamydophila caviae GPIC tail-specific protease NP_829060.1 200600 R 227941 CDS NP_829061.1 29839955 1217873 complement(202683..202961) 1 NC_003361.3 hypothetical protein 202961 1217873 CCA00188 Chlamydophila caviae GPIC hypothetical protein NP_829061.1 202683 R 227941 CDS NP_829062.1 29839956 1217874 203065..204015 1 NC_003361.3 hypothetical protein 204015 1217874 CCA00189 Chlamydophila caviae GPIC hypothetical protein NP_829062.1 203065 D 227941 CDS NP_829063.1 29839957 1217875 204212..204583 1 NC_003361.3 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 204583 rpsL 1217875 rpsL Chlamydophila caviae GPIC 30S ribosomal protein S12 NP_829063.1 204212 D 227941 CDS NP_829064.1 29839958 1217876 204627..205100 1 NC_003361.3 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 205100 rpsG 1217876 rpsG Chlamydophila caviae GPIC 30S ribosomal protein S7 NP_829064.1 204627 D 227941 CDS NP_829065.1 29839959 1217877 205142..207226 1 NC_003361.3 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 207226 fusA 1217877 fusA Chlamydophila caviae GPIC elongation factor G NP_829065.1 205142 D 227941 CDS NP_829066.1 29839960 1217878 207234..207551 1 NC_003361.3 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 207551 rpsJ 1217878 rpsJ Chlamydophila caviae GPIC 30S ribosomal protein S10 NP_829066.1 207234 D 227941 CDS NP_829067.1 29839961 1217879 207563..208618 1 NC_003361.3 similar to SP:P38038; identified by sequence similarity; oxidoreductase 208618 1217879 CCA00194 Chlamydophila caviae GPIC oxidoreductase NP_829067.1 207563 D 227941 CDS NP_829068.1 29839962 1217880 complement(208615..209145) 1 NC_003361.3 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 209145 ispF 1217880 ispF Chlamydophila caviae GPIC 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase NP_829068.1 208615 R 227941 CDS NP_829069.1 29839963 1217881 209465..209917 1 NC_003361.3 similar to GB:X05678, SP:P07788, GB:X07512, PID:39855, PID:39857, PID:1708638, GB:AL009126, GB:X05678, SP:P07788, GB:X07512, PID:39855, PID:39857, PID:1708638, and GB:AL009126; identified by sequence similarity; hypothetical protein 209917 1217881 CCA00196 Chlamydophila caviae GPIC hypothetical protein NP_829069.1 209465 D 227941 CDS NP_829070.1 29839964 1217882 210216..210536 1 NC_003361.3 identified by match to PFAM protein family HMM PF00829; 50S ribosomal protein L21 210536 rplU 1217882 rplU Chlamydophila caviae GPIC 50S ribosomal protein L21 NP_829070.1 210216 D 227941 CDS NP_829071.1 29839965 1217883 210564..210812 1 NC_003361.3 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 210812 rpmA 1217883 rpmA Chlamydophila caviae GPIC 50S ribosomal protein L27 NP_829071.1 210564 D 227941 CDS NP_829072.1 29839966 1217884 210929..211936 1 NC_003361.3 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 211936 obgE 1217884 obgE Chlamydophila caviae GPIC GTPase ObgE NP_829072.1 210929 D 227941 CDS NP_829073.1 29839967 1217885 complement(211834..212727) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02653; metal ABC transporter permease 212727 1217885 CCA00200 Chlamydophila caviae GPIC metal ABC transporter permease NP_829073.1 211834 R 227941 CDS NP_829074.1 29839968 1217886 complement(212724..213443) 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR01186; ABC transporter ATP-binding protein 213443 1217886 CCA00201 Chlamydophila caviae GPIC ABC transporter ATP-binding protein NP_829074.1 212724 R 227941 CDS NP_829075.1 29839969 1217887 complement(213440..214276) 1 NC_003361.3 identified by match to PFAM protein family HMM PF01297; ABC transporter periplasmic solute-binding protein 214276 1217887 CCA00202 Chlamydophila caviae GPIC ABC transporter periplasmic solute-binding protein NP_829075.1 213440 R 227941 CDS NP_829076.1 29839970 1217888 214863..215501 1 NC_003361.3 identified by match to PFAM protein family HMM PF02581; thiamine-phosphate pyrophosphorylase 215501 thiE 1217888 thiE Chlamydophila caviae GPIC thiamine-phosphate pyrophosphorylase NP_829076.1 214863 D 227941 CDS NP_829077.1 29839971 1217889 215495..216283 1 NC_003361.3 similar to SP:P76423; identified by sequence similarity; hydroxyethylthiazole kinase 216283 thiM 1217889 thiM Chlamydophila caviae GPIC hydroxyethylthiazole kinase NP_829077.1 215495 D 227941 CDS NP_829078.1 29839972 1217890 complement(216409..221796) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02415; hypothetical protein 221796 1217890 CCA00205 Chlamydophila caviae GPIC hypothetical protein NP_829078.1 216409 R 227941 CDS NP_829079.1 29839973 1217891 complement(221997..224801) 1 NC_003361.3 similar to GP:8978910; identified by sequence similarity; hypothetical protein 224801 1217891 CCA00206 Chlamydophila caviae GPIC hypothetical protein NP_829079.1 221997 R 227941 CDS NP_829080.1 29839974 1217892 complement(225024..225326) 1 NC_003361.3 hypothetical protein 225326 1217892 CCA00207 Chlamydophila caviae GPIC hypothetical protein NP_829080.1 225024 R 227941 CDS NP_829081.1 29839975 1217893 complement(225351..225704) 1 NC_003361.3 hypothetical protein 225704 1217893 CCA00208 Chlamydophila caviae GPIC hypothetical protein NP_829081.1 225351 R 227941 CDS NP_829082.1 29839976 1217894 complement(225903..227258) 1 NC_003361.3 similar to GB:M16753, and PID:143529; identified by sequence similarity; sodium/alanine symporter family protein 227258 1217894 CCA00209 Chlamydophila caviae GPIC sodium/alanine symporter family protein NP_829082.1 225903 R 227941 CDS NP_829083.1 29839977 1217895 complement(227329..227826) 1 NC_003361.3 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 227826 lspA 1217895 lspA Chlamydophila caviae GPIC lipoprotein signal peptidase NP_829083.1 227329 R 227941 CDS NP_829084.1 29839978 1217896 complement(227832..228206) 1 NC_003361.3 identified by match to PFAM protein family HMM PF01258; transcriptional regulator 228206 1217896 CCA00211 Chlamydophila caviae GPIC transcriptional regulator NP_829084.1 227832 R 227941 CDS NP_829085.1 29839979 1217897 complement(228237..228695) 1 NC_003361.3 similar to GB:M16753, PID:143529, GB:M16753, and PID:143529; identified by sequence similarity; transcriptional regulator NrdR 228695 nrdR 1217897 nrdR Chlamydophila caviae GPIC transcriptional regulator NrdR NP_829085.1 228237 R 227941 CDS NP_829086.1 29839980 1217898 228915..229520 1 NC_003361.3 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 229520 ribE 1217898 ribE Chlamydophila caviae GPIC riboflavin synthase subunit alpha NP_829086.1 228915 D 227941 CDS NP_829087.1 29839981 1217899 229522..230346 1 NC_003361.3 identified by match to PFAM protein family HMM PF03602; hypothetical protein 230346 1217899 CCA00214 Chlamydophila caviae GPIC hypothetical protein NP_829087.1 229522 D 227941 CDS NP_829088.1 29839982 1217900 230334..231131 1 NC_003361.3 identified by match to PFAM protein family HMM PF03236; spoU rRNA methylase 231131 1217900 CCA00215 Chlamydophila caviae GPIC spoU rRNA methylase NP_829088.1 230334 D 227941 CDS NP_829089.1 29839983 1217901 231383..232486 1 NC_003361.3 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 232486 lpxK 1217901 lpxK Chlamydophila caviae GPIC tetraacyldisaccharide 4'-kinase NP_829089.1 231383 D 227941 CDS NP_829090.1 29839984 1217902 232490..233737 1 NC_003361.3 identified by match to PFAM protein family HMM PF02447; sodium:dicarboxylate symporter family protein 233737 1217902 CCA00217 Chlamydophila caviae GPIC sodium:dicarboxylate symporter family protein NP_829090.1 232490 D 227941 CDS NP_829091.1 29839985 1217903 233750..234922 1 NC_003361.3 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 234922 1217903 CCA00218 Chlamydophila caviae GPIC branched-chain alpha-keto acid dehydrogenase subunit E2 NP_829091.1 233750 D 227941 CDS NP_829092.1 29839986 1217904 234953..235942 1 NC_003361.3 identified by match to PFAM protein family HMM PF00571; carbohydrate isomerase KpsF/GutQ family protein 235942 1217904 CCA00219 Chlamydophila caviae GPIC carbohydrate isomerase KpsF/GutQ family protein NP_829092.1 234953 D 227941 CDS NP_829093.1 29839987 1217905 complement(236357..237121) 1 NC_003361.3 similar to GB:U02462, and PID:407294; identified by sequence similarity; hypothetical protein 237121 1217905 CCA00220 Chlamydophila caviae GPIC hypothetical protein NP_829093.1 236357 R 227941 CDS NP_829094.1 29839988 1217906 complement(237601..238695) 1 NC_003361.3 similar to GP:7189157, and GP:7189157; identified by sequence similarity; hypothetical protein 238695 1217906 CCA00221 Chlamydophila caviae GPIC hypothetical protein NP_829094.1 237601 R 227941 CDS NP_829095.1 29839989 1217907 complement(238767..239138) 1 NC_003361.3 similar to GB:U02462, PID:407294, GB:U02462, and PID:407294; identified by sequence similarity; hypothetical protein 239138 1217907 CCA00222 Chlamydophila caviae GPIC hypothetical protein NP_829095.1 238767 R 227941 CDS NP_829096.1 29839990 1217908 complement(239193..239834) 1 NC_003361.3 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 239834 hemD 1217908 hemD Chlamydophila caviae GPIC uroporphyrinogen-III synthase NP_829096.1 239193 R 227941 CDS NP_829097.1 29839991 1217909 240163..241656 1 NC_003361.3 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 241656 glyA 1217909 glyA Chlamydophila caviae GPIC serine hydroxymethyltransferase NP_829097.1 240163 D 227941 CDS NP_829098.1 29839992 1217910 241676..242251 1 NC_003361.3 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 242251 clpP-2 1217910 clpP-2 Chlamydophila caviae GPIC ATP-dependent Clp protease proteolytic subunit NP_829098.1 241676 D 227941 CDS NP_829099.1 29839993 1217911 242220..243002 1 NC_003361.3 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 243002 dapF 1217911 dapF Chlamydophila caviae GPIC diaminopimelate epimerase NP_829099.1 242220 D 227941 CDS NP_829100.1 29839994 1217912 243153..244142 1 NC_003361.3 similar to SP:Q9Z834, GB:U09005, SP:P40608, and PID:507737; identified by sequence similarity; hypothetical protein 244142 1217912 CCA00227 Chlamydophila caviae GPIC hypothetical protein NP_829100.1 243153 D 227941 CDS NP_829101.1 29839995 1217913 complement(244148..244840) 1 NC_003361.3 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 244840 ubiE 1217913 ubiE Chlamydophila caviae GPIC ubiquinone/menaquinone biosynthesis methyltransferase NP_829101.1 244148 R 227941 CDS NP_829102.1 29839996 1217914 complement(244815..245597) 1 NC_003361.3 similar to GB:L17309, SP:P39064, PID:348049, PID:2293223, and GB:AL009126; identified by sequence similarity; hypothetical protein 245597 1217914 CCA00229 Chlamydophila caviae GPIC hypothetical protein NP_829102.1 244815 R 227941 CDS NP_829103.1 29839997 1217915 complement(245570..246685) 1 NC_003361.3 identified by match to PFAM protein family HMM PF04055; hypothetical protein 246685 1217915 CCA00230 Chlamydophila caviae GPIC hypothetical protein NP_829103.1 245570 R 227941 CDS NP_829104.1 29839998 1217916 complement(246651..246872) 1 NC_003361.3 similar to GP:7189168, and GP:7189168; identified by sequence similarity; hypothetical protein 246872 1217916 CCA00231 Chlamydophila caviae GPIC hypothetical protein NP_829104.1 246651 R 227941 CDS NP_829105.1 29839999 1217917 complement(246903..248765) 1 NC_003361.3 similar to GB:L17309, SP:P39064, PID:348049, PID:2293223, and GB:AL009126; identified by sequence similarity; hypothetical protein 248765 1217917 CCA00232 Chlamydophila caviae GPIC hypothetical protein NP_829105.1 246903 R 227941 CDS NP_829106.1 29840000 1217918 complement(248826..249176) 1 NC_003361.3 similar to GB:M63957, SP:P30720, PID:151242, and PID:999193; identified by sequence similarity; anti-anti-sigma factor 249176 rsbV_1 1217918 rsbV_1 Chlamydophila caviae GPIC anti-anti-sigma factor NP_829106.1 248826 R 227941 CDS NP_829107.1 29840001 1217919 complement(249292..250404) 1 NC_003361.3 similar to GB:M63957, SP:P30720, PID:151242, and PID:999193; identified by sequence similarity; hypothetical protein 250404 1217919 CCA00234 Chlamydophila caviae GPIC hypothetical protein NP_829107.1 249292 R 227941 CDS NP_829108.1 29840002 1217920 complement(250406..250882) 1 NC_003361.3 similar to GP:8978879, and GP:8978879; identified by sequence similarity; hypothetical protein 250882 1217920 CCA00235 Chlamydophila caviae GPIC hypothetical protein NP_829108.1 250406 R 227941 CDS NP_829109.1 29840003 1217921 complement(250902..251063) 1 NC_003361.3 similar to GP:7190735; identified by sequence similarity; hypothetical protein 251063 1217921 CCA00236 Chlamydophila caviae GPIC hypothetical protein NP_829109.1 250902 R 227941 CDS NP_829110.1 29840004 1217922 complement(251081..251242) 1 NC_003361.3 similar to GP:7190734, GB:X78435, SP:P48226, and PID:468559; identified by sequence similarity; hypothetical protein 251242 1217922 CCA00237 Chlamydophila caviae GPIC hypothetical protein NP_829110.1 251081 R 227941 CDS NP_829111.1 29840005 1217923 complement(251363..252025) 1 NC_003361.3 identified by match to PFAM protein family HMM PF04148; hypothetical protein 252025 1217923 CCA00238 Chlamydophila caviae GPIC hypothetical protein NP_829111.1 251363 R 227941 CDS NP_829112.1 29840006 1217924 complement(252211..252783) 1 NC_003361.3 similar to GP:8978875, and SP:Q39147; identified by sequence similarity; DNA-3-methyladenine glycosylase 252783 1217924 CCA00239 Chlamydophila caviae GPIC DNA-3-methyladenine glycosylase NP_829112.1 252211 R 227941 CDS NP_829113.1 29840007 1217925 complement(252783..254819) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02672; VacB/Rnb family exoribonuclease 254819 1217925 CCA00240 Chlamydophila caviae GPIC VacB/Rnb family exoribonuclease NP_829113.1 252783 R 227941 CDS NP_829114.1 29840008 1217926 complement(254973..256967) 1 NC_003361.3 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 256967 dnaK 1217926 dnaK Chlamydophila caviae GPIC molecular chaperone DnaK NP_829114.1 254973 R 227941 CDS NP_829115.1 29840009 1217927 complement(256998..257561) 1 NC_003361.3 similar to GB:M88112, and PID:155306; identified by sequence similarity; heat shock protein GrpE 257561 grpE 1217927 grpE Chlamydophila caviae GPIC heat shock protein GrpE NP_829115.1 256998 R 227941 CDS NP_829116.1 29840010 1217928 complement(257558..258718) 1 NC_003361.3 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 258718 hrcA 1217928 hrcA Chlamydophila caviae GPIC heat-inducible transcription repressor NP_829116.1 257558 R 227941 CDS NP_829117.1 29840011 1217929 complement(258827..260560) 1 NC_003361.3 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 260560 proS 1217929 proS Chlamydophila caviae GPIC prolyl-tRNA synthetase NP_829117.1 258827 R 227941 CDS NP_829118.1 29840012 1217930 260829..262043 1 NC_003361.3 similar to GP:8978869; identified by sequence similarity; hypothetical protein 262043 1217930 CCA00245 Chlamydophila caviae GPIC hypothetical protein NP_829118.1 260829 D 227941 CDS NP_829119.1 29840013 1217931 262152..263093 1 NC_003361.3 similar to GB:M34239, SP:P33119, GB:M80338, PID:144973, PID:144977, GB:M34239, SP:P33119, GB:M80338, PID:144973, and PID:144977; identified by sequence similarity; hypothetical protein 263093 1217931 CCA00246 Chlamydophila caviae GPIC hypothetical protein NP_829119.1 262152 D 227941 CDS NP_829120.1 29840014 1217932 263097..263375 1 NC_003361.3 similar to GB:M34239, SP:P33119, GB:M80338, PID:144973, and PID:144977; identified by sequence similarity; hypothetical protein 263375 1217932 CCA00247 Chlamydophila caviae GPIC hypothetical protein NP_829120.1 263097 D 227941 CDS NP_829121.1 29840015 1217933 complement(263372..264415) 1 NC_003361.3 similar to GB:M34239, SP:P33119, GB:M80338, PID:144973, and PID:144977; identified by sequence similarity; hypothetical protein 264415 1217933 CCA00248 Chlamydophila caviae GPIC hypothetical protein NP_829121.1 263372 R 227941 CDS NP_829122.1 29840016 1217934 complement(264421..265608) 1 NC_003361.3 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase 265608 1217934 CCA00249 Chlamydophila caviae GPIC L,L-diaminopimelate aminotransferase NP_829122.1 264421 R 227941 CDS NP_829123.1 29840017 1217935 265877..266767 1 NC_003361.3 identified by match to PFAM protein family HMM PF02987; hypothetical protein 266767 1217935 CCA00250 Chlamydophila caviae GPIC hypothetical protein NP_829123.1 265877 D 227941 CDS NP_829124.1 29840018 1217936 266873..266971 1 NC_003361.3 hypothetical protein 266971 1217936 CCA00251 Chlamydophila caviae GPIC hypothetical protein NP_829124.1 266873 D 227941 CDS NP_829125.1 29840019 1217937 267287..268528 1 NC_003361.3 hypothetical protein 268528 1217937 CCA00252 Chlamydophila caviae GPIC hypothetical protein NP_829125.1 267287 D 227941 CDS NP_829126.1 29840020 1217938 complement(268530..270614) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02404; hypothetical protein 270614 1217938 CCA00253 Chlamydophila caviae GPIC hypothetical protein NP_829126.1 268530 R 227941 CDS NP_829127.1 29840021 1217939 270755..271633 1 NC_003361.3 similar to GP:7189191; identified by sequence similarity; hypothetical protein 271633 1217939 CCA00254 Chlamydophila caviae GPIC hypothetical protein NP_829127.1 270755 D 227941 CDS NP_829128.1 29840022 1217940 271630..271962 1 NC_003361.3 identified by match to PFAM protein family HMM PF04126; HIT family protein 271962 1217940 CCA00255 Chlamydophila caviae GPIC HIT family protein NP_829128.1 271630 D 227941 CDS NP_829129.1 29840023 1217941 271986..273623 1 NC_003361.3 similar to GB:X57326, and PID:48151; identified by sequence similarity; hypothetical protein 273623 1217941 CCA00256 Chlamydophila caviae GPIC hypothetical protein NP_829129.1 271986 D 227941 CDS NP_829130.1 29840024 1217942 complement(273612..273875) 1 NC_003361.3 hypothetical protein 273875 1217942 CCA00257 Chlamydophila caviae GPIC hypothetical protein NP_829130.1 273612 R 227941 CDS NP_829131.1 29840025 1217943 274233..275567 1 NC_003361.3 similar to SP:P16256, GB:X57326, and PID:48151; identified by sequence similarity; sodium/pantothenate symporter 275567 1217943 CCA00258 Chlamydophila caviae GPIC sodium/pantothenate symporter NP_829131.1 274233 D 227941 CDS NP_829132.1 29840026 1217944 complement(275668..275862) 1 NC_003361.3 similar to GB:X57326, PID:48151, GB:X57326, and PID:48151; identified by sequence similarity; hypothetical protein 275862 1217944 CCA00259 Chlamydophila caviae GPIC hypothetical protein NP_829132.1 275668 R 227941 CDS NP_829133.1 29840027 1217945 complement(276074..276925) 1 NC_003361.3 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 276925 aroG 1217945 aroG Chlamydophila caviae GPIC 3-deoxy-7-phosphoheptulonate synthase NP_829133.1 276074 R 227941 CDS NP_829134.1 29840028 1217946 complement(276941..280075) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02638; hypothetical protein 280075 1217946 CCA00261 Chlamydophila caviae GPIC hypothetical protein NP_829134.1 276941 R 227941 CDS NP_829135.1 29840029 1217947 280211..280990 1 NC_003361.3 similar to GP:8978852; identified by sequence similarity; amino acid ABC transporter substrate-binding protein 280990 artJ 1217947 artJ Chlamydophila caviae GPIC amino acid ABC transporter substrate-binding protein NP_829135.1 280211 D 227941 CDS NP_829136.1 29840030 1217948 281198..281902 1 NC_003361.3 similar to GB:M99391, and PID:152478; identified by sequence similarity; hypothetical protein 281902 1217948 CCA00263 Chlamydophila caviae GPIC hypothetical protein NP_829136.1 281198 D 227941 CDS NP_829137.1 29840031 1217949 281935..282768 1 NC_003361.3 identified by match to PFAM protein family HMM PF00753; metal-dependent hydrolase 282768 1217949 CCA00264 Chlamydophila caviae GPIC metal-dependent hydrolase NP_829137.1 281935 D 227941 CDS NP_829138.1 29840032 1217950 282778..284154 1 NC_003361.3 similar to GP:7190694; identified by sequence similarity; GTP-binding protein HflX 284154 1217950 CCA00265 Chlamydophila caviae GPIC GTP-binding protein HflX NP_829138.1 282778 D 227941 CDS NP_829139.1 29840033 1217951 284277..285542 1 NC_003361.3 similar to GP:8978847; identified by sequence similarity; MiaB-like tRNA modifying enzyme 285542 1217951 CCA00266 Chlamydophila caviae GPIC MiaB-like tRNA modifying enzyme NP_829139.1 284277 D 227941 CDS NP_829140.1 29840034 1217952 285539..286537 1 NC_003361.3 identified by match to PFAM protein family HMM PF02814; hypothetical protein 286537 1217952 CCA00267 Chlamydophila caviae GPIC hypothetical protein NP_829140.1 285539 D 227941 CDS NP_829141.1 29840035 1217953 286550..288709 1 NC_003361.3 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 288709 glgB 1217953 glgB Chlamydophila caviae GPIC glycogen branching protein NP_829141.1 286550 D 227941 CDS NP_829142.1 29840036 1217954 288857..290617 1 NC_003361.3 similar to GB:X75069, SP:P41028, and PID:414099; identified by sequence similarity; hypothetical protein 290617 1217954 CCA00269 Chlamydophila caviae GPIC hypothetical protein NP_829142.1 288857 D 227941 CDS NP_829143.1 29840037 1217955 290822..293167 1 NC_003361.3 identified by match to PFAM protein family HMM PF03421; hypothetical protein 293167 1217955 CCA00270 Chlamydophila caviae GPIC hypothetical protein NP_829143.1 290822 D 227941 CDS NP_829144.1 29840038 1217956 complement(293211..296021) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02415; hypothetical protein 296021 1217956 CCA00271 Chlamydophila caviae GPIC hypothetical protein NP_829144.1 293211 R 227941 CDS NP_829145.1 29840039 1217957 complement(296044..298869) 1 NC_003361.3 similar to GB:M19395, SP:P10655, GB:M28336, PID:143130, and PID:143134; identified by sequence similarity; hypothetical protein 298869 1217957 CCA00272 Chlamydophila caviae GPIC hypothetical protein NP_829145.1 296044 R 227941 CDS NP_829146.1 29840040 1217958 complement(299033..301825) 1 NC_003361.3 similar to GB:M19395, SP:P10655, GB:M28336, PID:143130, PID:143134, GB:X75069, SP:P41028, and PID:414099; identified by sequence similarity; hypothetical protein 301825 1217958 CCA00273 Chlamydophila caviae GPIC hypothetical protein NP_829146.1 299033 R 227941 CDS NP_829147.1 29840041 1217959 complement(301852..304635) 1 NC_003361.3 similar to GB:M19395, SP:P10655, GB:M28336, PID:143130, and PID:143134; identified by sequence similarity; hypothetical protein 304635 1217959 CCA00274 Chlamydophila caviae GPIC hypothetical protein NP_829147.1 301852 R 227941 CDS NP_829148.1 29840042 1217960 complement(304845..305981) 1 NC_003361.3 similar to GB:M19395, SP:P10655, GB:M28336, PID:143130, and PID:143134; identified by sequence similarity; hypothetical protein 305981 1217960 CCA00275 Chlamydophila caviae GPIC hypothetical protein NP_829148.1 304845 R 227941 CDS NP_829149.1 29840043 1217961 306052..306147 1 NC_003361.3 hypothetical protein 306147 1217961 CCA00276 Chlamydophila caviae GPIC hypothetical protein NP_829149.1 306052 D 227941 CDS NP_829150.1 29840044 1217962 complement(306379..309324) 1 NC_003361.3 similar to GB:X69957, SP:P43148, and PID:396259; identified by sequence similarity; hypothetical protein 309324 1217962 CCA00277 Chlamydophila caviae GPIC hypothetical protein NP_829150.1 306379 R 227941 CDS NP_829151.1 29840045 1217963 complement(309350..312385) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02415; hypothetical protein 312385 1217963 CCA00278 Chlamydophila caviae GPIC hypothetical protein NP_829151.1 309350 R 227941 CDS NP_829152.1 29840046 1217964 complement(312634..315240) 1 NC_003361.3 similar to GB:M25260, SP:P26778, and PID:304172; identified by sequence similarity; hypothetical protein 315240 1217964 CCA00279 Chlamydophila caviae GPIC hypothetical protein NP_829152.1 312634 R 227941 CDS NP_829153.1 29840047 1217965 complement(315525..318056) 1 NC_003361.3 similar to GB:S70840, and PID:546752; identified by sequence similarity; hypothetical protein 318056 1217965 CCA00280 Chlamydophila caviae GPIC hypothetical protein NP_829153.1 315525 R 227941 CDS NP_829154.1 29840048 1217966 complement(318210..320741) 1 NC_003361.3 similar to GB:S70840, and PID:546752; identified by sequence similarity; hypothetical protein 320741 1217966 CCA00281 Chlamydophila caviae GPIC hypothetical protein NP_829154.1 318210 R 227941 CDS NP_829155.1 29840049 1217967 complement(320877..323705) 1 NC_003361.3 similar to GB:L09228, SP:P17616, GB:X51510, PID:40084, PID:410123, and GB:AL009126; identified by sequence similarity; hypothetical protein 323705 1217967 CCA00282 Chlamydophila caviae GPIC hypothetical protein NP_829155.1 320877 R 227941 CDS NP_829156.1 29840050 1217968 complement(323820..326420) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02415; hypothetical protein 326420 1217968 CCA00283 Chlamydophila caviae GPIC hypothetical protein NP_829156.1 323820 R 227941 CDS NP_829157.1 29840051 1217969 complement(326543..329323) 1 NC_003361.3 similar to GB:S70840, PID:546752, GB:L09228, SP:P17616, GB:X51510, PID:40084, PID:410123, and GB:AL009126; identified by sequence similarity; hypothetical protein 329323 1217969 CCA00284 Chlamydophila caviae GPIC hypothetical protein NP_829157.1 326543 R 227941 CDS NP_829158.1 29840052 1217971 complement(333958..334233) 1 NC_003361.3 identified by match to PFAM protein family HMM PF04070; hypothetical protein 334233 1217971 CCA00286 Chlamydophila caviae GPIC hypothetical protein NP_829158.1 333958 R 227941 CDS NP_829159.1 29840053 1217972 334432..334734 1 NC_003361.3 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 334734 gatC 1217972 gatC Chlamydophila caviae GPIC aspartyl/glutamyl-tRNA amidotransferase subunit C NP_829159.1 334432 D 227941 CDS NP_829160.1 29840054 1217974 336230..337693 1 NC_003361.3 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 337693 gatB 1217974 gatB Chlamydophila caviae GPIC aspartyl/glutamyl-tRNA amidotransferase subunit B NP_829160.1 336230 D 227941 CDS NP_829161.1 29840055 1217975 complement(337820..338965) 1 NC_003361.3 similar to GB:M17643, SP:P10728, PID:143614, PID:1303999, and GB:AL009126; identified by sequence similarity; hypothetical protein 338965 1217975 CCA00290 Chlamydophila caviae GPIC hypothetical protein NP_829161.1 337820 R 227941 CDS NP_829162.1 29840056 1217976 complement(339246..339764) 1 NC_003361.3 similar to GP:8978814; identified by sequence similarity; hypothetical protein 339764 1217976 CCA00291 Chlamydophila caviae GPIC hypothetical protein NP_829162.1 339246 R 227941 CDS NP_829163.1 29840057 1217977 complement(339892..340842) 1 NC_003361.3 similar to GB:M87483, SP:Q02000, and PID:149518; identified by sequence similarity; hypothetical protein 340842 1217977 CCA00292 Chlamydophila caviae GPIC hypothetical protein NP_829163.1 339892 R 227941 CDS NP_829164.1 29840058 1217978 complement(341067..341969) 1 NC_003361.3 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII 341969 rnhC 1217978 rnhC Chlamydophila caviae GPIC ribonuclease HIII NP_829164.1 341067 R 227941 CDS NP_829165.1 29840059 1217979 complement(342124..342249) 1 NC_003361.3 hypothetical protein 342249 1217979 CCA00294 Chlamydophila caviae GPIC hypothetical protein NP_829165.1 342124 R 227941 CDS NP_829166.1 29840060 1217980 342232..342663 1 NC_003361.3 hypothetical protein 342663 1217980 CCA00295 Chlamydophila caviae GPIC hypothetical protein NP_829166.1 342232 D 227941 CDS NP_829167.1 29840061 1217981 complement(342733..344079) 1 NC_003361.3 similar to GB:M88112, PID:155306, GB:M88112, and PID:155306; identified by sequence similarity; hypothetical protein 344079 1217981 CCA00296 Chlamydophila caviae GPIC hypothetical protein NP_829167.1 342733 R 227941 CDS NP_829168.1 29840062 1217982 complement(344368..345705) 1 NC_003361.3 similar to GB:M88112, PID:155306, GB:M88112, and PID:155306; identified by sequence similarity; hypothetical protein 345705 1217982 CCA00297 Chlamydophila caviae GPIC hypothetical protein NP_829168.1 344368 R 227941 CDS NP_829169.1 29840063 1217983 complement(346028..347629) 1 NC_003361.3 similar to GB:M88112, PID:155306, GB:M88112, and PID:155306; identified by sequence similarity; hypothetical protein 347629 1217983 CCA00298 Chlamydophila caviae GPIC hypothetical protein NP_829169.1 346028 R 227941 CDS NP_829170.1 29840064 1217984 348049..348915 1 NC_003361.3 similar to GB:M88112, PID:155306, GB:M88112, and PID:155306; identified by sequence similarity; hypothetical protein 348915 1217984 CCA00299 Chlamydophila caviae GPIC hypothetical protein NP_829170.1 348049 D 227941 CDS NP_829171.1 29840065 1217985 349093..349911 1 NC_003361.3 similar to GB:M88112, PID:155306, GB:M88112, and PID:155306; identified by sequence similarity; hypothetical protein 349911 1217985 CCA00300 Chlamydophila caviae GPIC hypothetical protein NP_829171.1 349093 D 227941 CDS NP_829172.1 29840066 1217986 350419..352521 1 NC_003361.3 similar to GB:D14607, PID:540502, GB:D14607, and PID:540502; identified by sequence similarity; hypothetical protein 352521 1217986 CCA00301 Chlamydophila caviae GPIC hypothetical protein NP_829172.1 350419 D 227941 CDS NP_829173.1 29840067 1217987 352633..353715 1 NC_003361.3 similar to GB:D14607, and PID:540502; identified by sequence similarity; hypothetical protein 353715 1217987 CCA00302 Chlamydophila caviae GPIC hypothetical protein NP_829173.1 352633 D 227941 CDS NP_829174.1 29840068 1217988 353724..354560 1 NC_003361.3 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 354560 ksgA 1217988 ksgA Chlamydophila caviae GPIC dimethyladenosine transferase NP_829174.1 353724 D 227941 CDS NP_829175.1 29840069 1217989 complement(355005..356939) 1 NC_003361.3 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 356939 dxs 1217989 dxs Chlamydophila caviae GPIC 1-deoxy-D-xylulose-5-phosphate synthase NP_829175.1 355005 R 227941 CDS NP_829176.1 29840070 1217990 complement(356936..357187) 1 NC_003361.3 similar to GB:U14003, SP:P39303, PID:537036, GB:U00096, and PID:2367359; identified by sequence similarity; hypothetical protein 357187 1217990 CCA00305 Chlamydophila caviae GPIC hypothetical protein NP_829176.1 356936 R 227941 CDS NP_829177.1 29840071 1217991 complement(357202..357429) 1 NC_003361.3 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 357429 xseB 1217991 xseB Chlamydophila caviae GPIC exodeoxyribonuclease VII small subunit NP_829177.1 357202 R 227941 CDS NP_829178.1 29840072 1217992 complement(357433..359100) 1 NC_003361.3 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 359100 xseA 1217992 xseA Chlamydophila caviae GPIC exodeoxyribonuclease VII large subunit NP_829178.1 357433 R 227941 CDS NP_829179.1 29840073 1217993 359233..359997 1 NC_003361.3 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 359997 tpiA 1217993 tpiA Chlamydophila caviae GPIC triosephosphate isomerase NP_829179.1 359233 D 227941 CDS NP_829180.1 29840074 1217994 360287..360601 1 NC_003361.3 similar to GB:M33815, SP:P21408, and PID:152860; identified by sequence similarity; preprotein translocase subunit SecG 360601 secG 1217994 secG Chlamydophila caviae GPIC preprotein translocase subunit SecG NP_829180.1 360287 D 227941 CDS NP_829181.1 29840075 1217995 360659..360805 1 NC_003361.3 hypothetical protein 360805 1217995 CCA00310 Chlamydophila caviae GPIC hypothetical protein NP_829181.1 360659 D 227941 CDS NP_829182.1 29840076 1217996 360830..361390 1 NC_003361.3 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 361390 def 1217996 def Chlamydophila caviae GPIC peptide deformylase NP_829182.1 360830 D 227941 CDS NP_829183.1 29840077 1217997 complement(361452..363548) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03859; hypothetical protein 363548 1217997 CCA00312 Chlamydophila caviae GPIC hypothetical protein NP_829183.1 361452 R 227941 CDS NP_829184.1 29840078 1217998 complement(363559..365265) 1 NC_003361.3 similar to GB:X75568; identified by sequence similarity; hypothetical protein 365265 1217998 CCA00313 Chlamydophila caviae GPIC hypothetical protein NP_829184.1 363559 R 227941 CDS NP_829185.1 29840079 1217999 complement(365247..365837) 1 NC_003361.3 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 365837 maf 1217999 maf Chlamydophila caviae GPIC Maf-like protein NP_829185.1 365247 R 227941 CDS NP_829186.1 29840080 1218000 complement(365882..367507) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02483; ABC transporter ATP-binding protein 367507 1218000 CCA00315 Chlamydophila caviae GPIC ABC transporter ATP-binding protein NP_829186.1 365882 R 227941 CDS NP_829187.1 29840081 1218001 complement(367524..368462) 1 NC_003361.3 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 368462 xerC 1218001 xerC Chlamydophila caviae GPIC site-specific tyrosine recombinase XerC NP_829187.1 367524 R 227941 CDS NP_829188.1 29840082 1218002 complement(368505..369425) 1 NC_003361.3 member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 369425 1218002 CCA00317 Chlamydophila caviae GPIC ribonuclease Z NP_829188.1 368505 R 227941 CDS NP_829189.1 29840083 1218003 complement(369529..370230) 1 NC_003361.3 hypothetical protein 370230 1218003 CCA00318 Chlamydophila caviae GPIC hypothetical protein NP_829189.1 369529 R 227941 CDS NP_829190.1 29840084 1218004 complement(370370..372826) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02414; ATP-dependent protease La 372826 lon 1218004 lon Chlamydophila caviae GPIC ATP-dependent protease La NP_829190.1 370370 R 227941 CDS NP_829191.1 29840085 1218005 372994..373128 1 NC_003361.3 hypothetical protein 373128 1218005 CCA00320 Chlamydophila caviae GPIC hypothetical protein NP_829191.1 372994 D 227941 CDS NP_829192.1 29840086 1218006 373479..374120 1 NC_003361.3 similar to GP:7190660; identified by sequence similarity; hypothetical protein 374120 1218006 CCA00321 Chlamydophila caviae GPIC hypothetical protein NP_829192.1 373479 D 227941 CDS NP_829193.1 29840087 1218007 374317..374493 1 NC_003361.3 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 374493 rpsU 1218007 rpsU Chlamydophila caviae GPIC 30S ribosomal protein S21 NP_829193.1 374317 D 227941 CDS NP_829194.1 29840088 1218008 374523..375701 1 NC_003361.3 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 375701 dnaJ 1218008 dnaJ Chlamydophila caviae GPIC molecular chaperone DnaJ NP_829194.1 374523 D 227941 CDS NP_829195.1 29840089 1218009 375736..377772 1 NC_003361.3 identified by match to PFAM protein family HMM PF02745; 2-oxoisovalerate dehydrogenase E1 377772 pdhA/pdhB 1218009 pdhA/pdhB Chlamydophila caviae GPIC 2-oxoisovalerate dehydrogenase E1 NP_829195.1 375736 D 227941 CDS NP_829196.1 29840090 1218010 complement(377769..378806) 1 NC_003361.3 similar to GP:7189658, and GP:7189658; identified by sequence similarity; hypothetical protein 378806 1218010 CCA00325 Chlamydophila caviae GPIC hypothetical protein NP_829196.1 377769 R 227941 CDS NP_829197.1 29840091 1218012 380447..381238 1 NC_003361.3 similar to SP:P00800, GB:X76986, PID:441267, PID:512558, SP:P00800, GB:X76986, PID:441267, and PID:512558; identified by sequence similarity; hypothetical protein 381238 1218012 CCA00327 Chlamydophila caviae GPIC hypothetical protein NP_829197.1 380447 D 227941 CDS NP_829198.1 29840092 1218013 381228..381566 1 NC_003361.3 similar to SP:P00800, GB:X76986, PID:441267, and PID:512558; identified by sequence similarity; phosphocarrier protein HPr 381566 ptsH 1218013 ptsH Chlamydophila caviae GPIC phosphocarrier protein HPr NP_829198.1 381228 D 227941 CDS NP_829199.1 29840093 1218014 381567..383267 1 NC_003361.3 similar to SP:P00800, GB:X76986, PID:441267, and PID:512558; identified by sequence similarity; phosphoenolpyruvate-protein phosphotransferase 383267 ptsI 1218014 ptsI Chlamydophila caviae GPIC phosphoenolpyruvate-protein phosphotransferase NP_829199.1 381567 D 227941 CDS NP_829200.1 29840094 1218015 complement(383264..383554) 1 NC_003361.3 similar to SP:P00800, GB:X76986, PID:441267, PID:512558, SP:P00800, GB:X76986, PID:441267, and PID:512558; identified by sequence similarity; hypothetical protein 383554 1218015 CCA00330 Chlamydophila caviae GPIC hypothetical protein NP_829200.1 383264 R 227941 CDS NP_829201.1 29840095 1218016 complement(383557..384897) 1 NC_003361.3 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 384897 dnaZ 1218016 dnaZ Chlamydophila caviae GPIC DNA polymerase III subunits gamma and tau NP_829201.1 383557 R 227941 CDS NP_829202.1 29840096 1218017 385236..385361 1 NC_003361.3 hypothetical protein 385361 1218017 CCA00332 Chlamydophila caviae GPIC hypothetical protein NP_829202.1 385236 D 227941 CDS NP_829203.1 29840097 1218018 385392..387488 1 NC_003361.3 similar to GB:M82881, SP:P33385, PID:149647, GB:M82881, SP:P33385, and PID:149647; identified by sequence similarity; hypothetical protein 387488 1218018 CCA00333 Chlamydophila caviae GPIC hypothetical protein NP_829203.1 385392 D 227941 CDS NP_829204.1 29840098 1218019 complement(387507..387971) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03675; hypothetical protein 387971 1218019 CCA00334 Chlamydophila caviae GPIC hypothetical protein NP_829204.1 387507 R 227941 CDS NP_829205.1 29840099 1218020 complement(388218..388655) 1 NC_003361.3 similar to GB:M82881, SP:P33385, PID:149647, GB:M82881, SP:P33385, and PID:149647; identified by sequence similarity; hypothetical protein 388655 1218020 CCA00335 Chlamydophila caviae GPIC hypothetical protein NP_829205.1 388218 R 227941 CDS NP_829206.1 29840100 1218021 complement(389048..389488) 1 NC_003361.3 hypothetical protein 389488 1218021 CCA00336 Chlamydophila caviae GPIC hypothetical protein NP_829206.1 389048 R 227941 CDS NP_829207.1 29840101 1218022 complement(389842..390294) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03132; hypothetical protein 390294 1218022 CCA00337 Chlamydophila caviae GPIC hypothetical protein NP_829207.1 389842 R 227941 CDS NP_829208.1 29840102 1218023 complement(390676..391092) 1 NC_003361.3 hypothetical protein 391092 1218023 CCA00338 Chlamydophila caviae GPIC hypothetical protein NP_829208.1 390676 R 227941 CDS NP_829209.1 29840103 1218024 complement(391167..391631) 1 NC_003361.3 identified by match to PFAM protein family HMM PF04276; hypothetical protein 391631 1218024 CCA00339 Chlamydophila caviae GPIC hypothetical protein NP_829209.1 391167 R 227941 CDS NP_829210.1 29840104 1218025 complement(391760..392488) 1 NC_003361.3 transformation of prophobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 392488 1218025 CCA00340 Chlamydophila caviae GPIC porphobilinogen deaminase NP_829210.1 391760 R 227941 CDS NP_829211.1 29840105 1218026 complement(392466..393827) 1 NC_003361.3 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 393827 radA 1218026 radA Chlamydophila caviae GPIC DNA repair protein RadA NP_829211.1 392466 R 227941 CDS NP_829212.1 29840106 1218027 complement(393793..394506) 1 NC_003361.3 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 394506 rnc 1218027 rnc Chlamydophila caviae GPIC ribonuclease III NP_829212.1 393793 R 227941 CDS NP_829213.1 29840107 1218028 394626..395090 1 NC_003361.3 similar to GB:L01055, SP:P31715, GB:S65052, PID:295156, and PID:410007; identified by sequence similarity; hypothetical protein 395090 1218028 CCA00343 Chlamydophila caviae GPIC hypothetical protein NP_829213.1 394626 D 227941 CDS NP_829214.1 29840108 1218029 395188..396990 1 NC_003361.3 similar to GB:S61968, GB:X76688, and SP:P46738; identified by sequence similarity; phosphoglucomutase/phosphomannomutase 396990 1218029 CCA00344 Chlamydophila caviae GPIC phosphoglucomutase/phosphomannomutase NP_829214.1 395188 D 227941 CDS NP_829215.1 29840109 1218030 397180..397797 1 NC_003361.3 similar to GB:S61968, GB:X76688, and SP:P46738; identified by sequence similarity; superoxide dismutase 397797 sod 1218030 sod Chlamydophila caviae GPIC superoxide dismutase NP_829215.1 397180 D 227941 CDS NP_829216.1 29840110 1218031 397874..398800 1 NC_003361.3 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 398800 accD 1218031 accD Chlamydophila caviae GPIC acetyl-CoA carboxylase subunit beta NP_829216.1 397874 D 227941 CDS NP_829217.1 29840111 1218032 398843..399286 1 NC_003361.3 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 399286 dut 1218032 dut Chlamydophila caviae GPIC deoxyuridine 5'-triphosphate nucleotidohydrolase NP_829217.1 398843 D 227941 CDS NP_829218.1 29840112 1218033 399288..399764 1 NC_003361.3 similar to GB:S61968, GB:X76688, and SP:P46738; identified by sequence similarity; PTS system,IIA component 399764 ptsN_1 1218033 ptsN_1 Chlamydophila caviae GPIC PTS system,IIA component NP_829218.1 399288 D 227941 CDS NP_829219.1 29840113 1218034 399770..400450 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR01764; DNA binding protein/PTS system, IIA component 400450 1218034 CCA00349 Chlamydophila caviae GPIC DNA binding protein/PTS system, IIA component NP_829219.1 399770 D 227941 CDS NP_829220.1 29840114 1218035 400549..401805 1 NC_003361.3 similar to GB:X05678, SP:P07788, GB:X07512, PID:39855, PID:39857, PID:1708638, and GB:AL009126; identified by sequence similarity; hypothetical protein 401805 1218035 CCA00350 Chlamydophila caviae GPIC hypothetical protein NP_829220.1 400549 D 227941 CDS NP_829221.1 29840115 1218036 401993..403744 1 NC_003361.3 identified by match to PFAM protein family HMM PF02683; hypothetical protein 403744 1218036 CCA00351 Chlamydophila caviae GPIC hypothetical protein NP_829221.1 401993 D 227941 CDS NP_829222.1 29840116 1218037 complement(403764..404357) 1 NC_003361.3 similar to GB:M87483, SP:Q02000, PID:149518, GB:M87483, SP:Q02000, and PID:149518; identified by sequence similarity; hypothetical protein 404357 1218037 CCA00352 Chlamydophila caviae GPIC hypothetical protein NP_829222.1 403764 R 227941 CDS NP_829223.1 29840117 1218038 complement(404369..404929) 1 NC_003361.3 similar to GB:D10483, SP:P31553, GB:X73904, PID:216465, PID:563861, GB:U00096, PID:1786224, GB:D10483, SP:P31553, GB:X73904, PID:216465, PID:563861, GB:U00096, and PID:1786224; identified by sequence similarity; hypothetical protein 404929 1218038 CCA00353 Chlamydophila caviae GPIC hypothetical protein NP_829223.1 404369 R 227941 CDS NP_829224.1 29840118 1218039 405034..406116 1 NC_003361.3 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 406116 mnmA 1218039 mnmA Chlamydophila caviae GPIC tRNA-specific 2-thiouridylase MnmA NP_829224.1 405034 D 227941 CDS NP_829225.1 29840119 1218040 complement(406100..408640) 1 NC_003361.3 similar to GP:7189244; identified by sequence similarity; ATP-dependent Clp protease, ATP-binding subunit 408640 clpC 1218040 clpC Chlamydophila caviae GPIC ATP-dependent Clp protease, ATP-binding subunit NP_829225.1 406100 R 227941 CDS NP_829226.1 29840120 1218041 408844..409560 1 NC_003361.3 similar to GB:D10483, SP:P31553, GB:X73904, PID:216465, PID:563861, GB:U00096, PID:1786224, GB:D10483, SP:P31553, GB:X73904, PID:216465, PID:563861, GB:U00096, and PID:1786224; identified by sequence similarity; hypothetical protein 409560 1218041 CCA00356 Chlamydophila caviae GPIC hypothetical protein NP_829226.1 408844 D 227941 CDS NP_829227.1 29840121 1218042 409557..410981 1 NC_003361.3 similar to GP:7190598; identified by sequence similarity; phospholipase D 410981 1218042 CCA00357 Chlamydophila caviae GPIC phospholipase D NP_829227.1 409557 D 227941 CDS NP_829228.1 29840122 1218043 411111..413180 1 NC_003361.3 similar to GP:8163246; identified by sequence similarity; hypothetical protein 413180 1218043 CCA00358 Chlamydophila caviae GPIC hypothetical protein NP_829228.1 411111 D 227941 CDS NP_829229.1 29840123 1218044 413180..413521 1 NC_003361.3 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 413521 1218044 CCA00359 Chlamydophila caviae GPIC glycine cleavage system protein H NP_829229.1 413180 D 227941 CDS NP_829230.1 29840124 1218045 413645..413938 1 NC_003361.3 identified by match to PFAM protein family HMM PF03248; hypothetical protein 413938 1218045 CCA00360 Chlamydophila caviae GPIC hypothetical protein NP_829230.1 413645 D 227941 CDS NP_829231.1 29840125 1218046 413960..414292 1 NC_003361.3 identified by match to PFAM protein family HMM PF03376; hypothetical protein 414292 1218046 CCA00361 Chlamydophila caviae GPIC hypothetical protein NP_829231.1 413960 D 227941 CDS NP_829232.1 29840126 1218047 complement(414294..415088) 1 NC_003361.3 similar to SP:Q56589; identified by sequence similarity; Na(+)-translocating NADH-quinone reductase subunit E 415088 nqrE 1218047 nqrE Chlamydophila caviae GPIC Na(+)-translocating NADH-quinone reductase subunit E NP_829232.1 414294 R 227941 CDS NP_829233.1 29840127 1218048 complement(415093..415734) 1 NC_003361.3 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 415734 nqrD 1218048 nqrD Chlamydophila caviae GPIC Na(+)-translocating NADH-quinone reductase subunit D NP_829233.1 415093 R 227941 CDS NP_829234.1 29840128 1218049 complement(415721..416680) 1 NC_003361.3 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 416680 nqrC 1218049 nqrC Chlamydophila caviae GPIC Na(+)-translocating NADH-quinone reductase subunit C NP_829234.1 415721 R 227941 CDS NP_829235.1 29840129 1218050 complement(416685..418196) 1 NC_003361.3 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 418196 nqrB 1218050 nqrB Chlamydophila caviae GPIC Na(+)-translocating NADH-quinone reductase subunit B NP_829235.1 416685 R 227941 CDS NP_829236.1 29840130 1218052 complement(418843..419433) 1 NC_003361.3 similar to GB:Z34287, SP:P39781, PID:498813, and GB:AL009126; identified by sequence similarity; hypothetical protein 419433 1218052 CCA00367 Chlamydophila caviae GPIC hypothetical protein NP_829236.1 418843 R 227941 CDS NP_829237.1 29840131 1218053 complement(419450..420802) 1 NC_003361.3 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 420802 dnaA 1218053 dnaA Chlamydophila caviae GPIC chromosome replication initiator DnaA NP_829237.1 419450 R 227941 CDS NP_829238.1 29840132 1218054 420818..420982 1 NC_003361.3 hypothetical protein 420982 1218054 CCA00369 Chlamydophila caviae GPIC hypothetical protein NP_829238.1 420818 D 227941 CDS NP_829239.1 29840133 1218055 complement(420999..421430) 1 NC_003361.3 similar to GP:8163245; identified by sequence similarity; type III secretion chaperone 421430 1218055 CCA00370 Chlamydophila caviae GPIC type III secretion chaperone NP_829239.1 420999 R 227941 CDS NP_829240.1 29840134 1218056 complement(421434..421982) 1 NC_003361.3 similar to GB:M97296, SP:Q03417, and PID:155583; identified by sequence similarity; hypothetical protein 421982 1218056 CCA00371 Chlamydophila caviae GPIC hypothetical protein NP_829240.1 421434 R 227941 CDS NP_829241.1 29840135 1218057 422155..423048 1 NC_003361.3 identified by match to PFAM protein family HMM PF03109; S-adenosyl-methyltransferase MraW 423048 mraW 1218057 mraW Chlamydophila caviae GPIC S-adenosyl-methyltransferase MraW NP_829241.1 422155 D 227941 CDS NP_829242.1 29840136 1218058 423048..423335 1 NC_003361.3 similar to GP:7190583; identified by sequence similarity; hypothetical protein 423335 1218058 CCA00373 Chlamydophila caviae GPIC hypothetical protein NP_829242.1 423048 D 227941 CDS NP_829243.1 29840137 1218059 423322..425271 1 NC_003361.3 similar to GB:M83673, and PID:151093; identified by sequence similarity; penicillin-binding protein 425271 pbp3 1218059 pbp3 Chlamydophila caviae GPIC penicillin-binding protein NP_829243.1 423322 D 227941 CDS NP_829244.1 29840138 1218060 complement(425274..425717) 1 NC_003361.3 similar to GB:S61968, GB:X76688, SP:P46738, GB:S61968, GB:X76688, and SP:P46738; identified by sequence similarity; hypothetical protein 425717 1218060 CCA00375 Chlamydophila caviae GPIC hypothetical protein NP_829244.1 425274 R 227941 CDS NP_829245.1 29840139 1218061 426032..427483 1 NC_003361.3 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 427483 murE 1218061 murE Chlamydophila caviae GPIC UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase NP_829245.1 426032 D 227941 CDS NP_829246.1 29840140 1218062 427398..428195 1 NC_003361.3 similar to GB:M37202, SP:P37716, and PID:141733; identified by sequence similarity; N-acetylmuramoyl-L-alanine amidase 428195 1218062 CCA00377 Chlamydophila caviae GPIC N-acetylmuramoyl-L-alanine amidase NP_829246.1 427398 D 227941 CDS NP_829247.1 29840141 1218063 428599..428901 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR00987; integration host factor beta-subunit 428901 1218063 CCA00378 Chlamydophila caviae GPIC integration host factor beta-subunit NP_829247.1 428599 D 227941 CDS NP_829248.1 29840142 1218064 429029..430210 1 NC_003361.3 similar to GB:M37202, SP:P37716, and PID:141733; identified by sequence similarity; hypothetical protein 430210 1218064 CCA00379 Chlamydophila caviae GPIC hypothetical protein NP_829248.1 429029 D 227941 CDS NP_829249.1 29840143 1218065 430316..431290 1 NC_003361.3 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 431290 accA 1218065 accA Chlamydophila caviae GPIC acetyl-CoA carboxylase carboxyltransferase subunit alpha NP_829249.1 430316 D 227941 CDS NP_829250.1 29840144 1218066 431256..433217 1 NC_003361.3 similar to GB:M37202, SP:P37716, and PID:141733; identified by sequence similarity; ABC transporter ATP-binding protein 433217 1218066 CCA00381 Chlamydophila caviae GPIC ABC transporter ATP-binding protein NP_829250.1 431256 D 227941 CDS NP_829251.1 29840145 1218067 complement(433226..433879) 1 NC_003361.3 similar to GB:M90761, SP:Q02137, and PID:149432; identified by sequence similarity; hypothetical protein 433879 1218067 CCA00382 Chlamydophila caviae GPIC hypothetical protein NP_829251.1 433226 R 227941 CDS NP_829252.1 29840146 1218068 complement(433860..434633) 1 NC_003361.3 similar to GB:U09530, GB:Z35104, SP:P46359, PID:493076, and PID:510936; identified by sequence similarity; hypothetical protein 434633 1218068 CCA00383 Chlamydophila caviae GPIC hypothetical protein NP_829252.1 433860 R 227941 CDS NP_829253.1 29840147 1218069 complement(434630..435316) 1 NC_003361.3 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 435316 dnaQ-2 1218069 dnaQ-2 Chlamydophila caviae GPIC DNA polymerase III subunit epsilon NP_829253.1 434630 R 227941 CDS NP_829254.1 29840148 1218070 complement(435331..435804) 1 NC_003361.3 similar to GB:Z35107, and PID:510938; identified by sequence similarity; hypothetical protein 435804 1218070 CCA00385 Chlamydophila caviae GPIC hypothetical protein NP_829254.1 435331 R 227941 CDS NP_829255.1 29840149 1218071 complement(435836..436342) 1 NC_003361.3 similar to GB:Z35107, and PID:510938; identified by sequence similarity; hypothetical protein 436342 1218071 CCA00386 Chlamydophila caviae GPIC hypothetical protein NP_829255.1 435836 R 227941 CDS NP_829256.1 29840150 1218072 436707..437594 1 NC_003361.3 similar to GB:Z35107, and PID:510938; identified by sequence similarity; HAD family phosphatase 437594 1218072 CCA00387 Chlamydophila caviae GPIC HAD family phosphatase NP_829256.1 436707 D 227941 CDS NP_829257.1 29840151 1218073 complement(437581..438480) 1 NC_003361.3 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 438480 fabI 1218073 fabI Chlamydophila caviae GPIC enoyl-ACP reductase NP_829257.1 437581 R 227941 CDS NP_829258.1 29840152 1218074 438745..440925 1 NC_003361.3 similar to GP:7190422, GB:M64978, and PID:150554; identified by sequence similarity; hypothetical protein 440925 1218074 CCA00389 Chlamydophila caviae GPIC hypothetical protein NP_829258.1 438745 D 227941 CDS NP_829259.1 29840153 1218075 441052..443748 1 NC_003361.3 identified by match to PFAM protein family HMM PF02952; hypothetical protein 443748 1218075 CCA00390 Chlamydophila caviae GPIC hypothetical protein NP_829259.1 441052 D 227941 CDS NP_829260.1 29840154 1218077 444619..445728 1 NC_003361.3 similar to GB:Z29675, GB:Z35485, GB:Z35486, GB:Z35487, GB:Z35496, SP:P46360, PID:474835, PID:517232, PID:517234, PID:517236, and PID:517386; identified by sequence similarity; adenine glycosylase 445728 mutY 1218077 mutY Chlamydophila caviae GPIC adenine glycosylase NP_829260.1 444619 D 227941 CDS NP_829261.1 29840155 1218078 445733..446119 1 NC_003361.3 similar to GB:Z29675, GB:Z35485, GB:Z35486, GB:Z35487, GB:Z35496, SP:P46360, PID:474835, PID:517232, PID:517234, PID:517236, and PID:517386; identified by sequence similarity; nucleotide pyrophosphohydrolase 446119 1218078 CCA00393 Chlamydophila caviae GPIC nucleotide pyrophosphohydrolase NP_829261.1 445733 D 227941 CDS NP_829262.1 29840156 1218079 complement(446303..447079) 1 NC_003361.3 similar to GB:Z29675, GB:Z35485, GB:Z35486, GB:Z35487, GB:Z35496, SP:P46360, PID:474835, PID:517232, PID:517234, PID:517236, and PID:517386; identified by sequence similarity; hypothetical protein 447079 1218079 CCA00394 Chlamydophila caviae GPIC hypothetical protein NP_829262.1 446303 R 227941 CDS NP_829263.1 29840157 1218080 complement(447083..447727) 1 NC_003361.3 similar to GB:L07795, and PID:148862; identified by sequence similarity; hypothetical protein 447727 1218080 CCA00395 Chlamydophila caviae GPIC hypothetical protein NP_829263.1 447083 R 227941 CDS NP_829264.1 29840158 1218081 complement(447932..448063) 1 NC_003361.3 similar to GP:7190581; identified by sequence similarity; hypothetical protein 448063 1218081 CCA00396 Chlamydophila caviae GPIC hypothetical protein NP_829264.1 447932 R 227941 CDS NP_829265.1 29840159 1218082 complement(448468..448833) 1 NC_003361.3 identified by match to PFAM protein family HMM PF04143; hypothetical protein 448833 1218082 CCA00397 Chlamydophila caviae GPIC hypothetical protein NP_829265.1 448468 R 227941 CDS NP_829266.1 29840160 1218083 complement(448899..450029) 1 NC_003361.3 identified by match to PFAM protein family HMM PF04143; hypothetical protein 450029 1218083 CCA00398 Chlamydophila caviae GPIC hypothetical protein NP_829266.1 448899 R 227941 CDS NP_829267.1 29840161 1218084 450320..451069 1 NC_003361.3 similar to GP:8978769; identified by sequence similarity; serine/threonine protein phosphatase 451069 1218084 CCA00399 Chlamydophila caviae GPIC serine/threonine protein phosphatase NP_829267.1 450320 D 227941 CDS NP_829268.1 29840162 1218085 451093..452208 1 NC_003361.3 similar to GB:L07795, and PID:148862; identified by sequence similarity; nifS protein 452208 1218085 CCA00400 Chlamydophila caviae GPIC nifS protein NP_829268.1 451093 D 227941 CDS NP_829269.1 29840163 1218086 complement(452211..453425) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03471; hypothetical protein 453425 hly3 1218086 hly3 Chlamydophila caviae GPIC hypothetical protein NP_829269.1 452211 R 227941 CDS NP_829270.1 29840164 1218087 complement(453418..454653) 1 NC_003361.3 similar to GP:8978766; identified by sequence similarity; hypothetical protein 454653 tlyC_1 1218087 tlyC_1 Chlamydophila caviae GPIC hypothetical protein NP_829270.1 453418 R 227941 CDS NP_829271.1 29840165 1218088 complement(454663..454992) 1 NC_003361.3 identified by match to PFAM protein family HMM PF01713; hypothetical protein 454992 1218088 CCA00403 Chlamydophila caviae GPIC hypothetical protein NP_829271.1 454663 R 227941 CDS NP_829272.1 29840166 1218089 complement(455002..455574) 1 NC_003361.3 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 455574 dcd 1218089 dcd Chlamydophila caviae GPIC deoxycytidine triphosphate deaminase NP_829272.1 455002 R 227941 CDS NP_829273.1 29840167 1218090 complement(455671..455826) 1 NC_003361.3 hypothetical protein 455826 1218090 CCA00405 Chlamydophila caviae GPIC hypothetical protein NP_829273.1 455671 R 227941 CDS NP_829274.1 29840168 1218091 456177..457190 1 NC_003361.3 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 457190 ruvB 1218091 ruvB Chlamydophila caviae GPIC Holliday junction DNA helicase RuvB NP_829274.1 456177 D 227941 CDS NP_829275.1 29840169 1218092 457187..458002 1 NC_003361.3 hypothetical protein 458002 1218092 CCA00407 Chlamydophila caviae GPIC hypothetical protein NP_829275.1 457187 D 227941 CDS NP_829276.1 29840170 1218093 complement(457995..459983) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02922; glycosyl hydrolase 459983 1218093 CCA00408 Chlamydophila caviae GPIC glycosyl hydrolase NP_829276.1 457995 R 227941 CDS NP_829277.1 29840171 1218094 460116..460622 1 NC_003361.3 hypothetical protein 460622 1218094 CCA00409 Chlamydophila caviae GPIC hypothetical protein NP_829277.1 460116 D 227941 CDS NP_829278.1 29840172 1218095 461294..461779 1 NC_003361.3 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 461779 ssb 1218095 ssb Chlamydophila caviae GPIC single-stranded DNA-binding protein NP_829278.1 461294 D 227941 CDS NP_829279.1 29840173 1218096 461817..463316 1 NC_003361.3 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 463316 pepA 1218096 pepA Chlamydophila caviae GPIC leucyl aminopeptidase NP_829279.1 461817 D 227941 CDS NP_829280.1 29840174 1218097 463458..463916 1 NC_003361.3 similar to GB:Z33880, and PID:535939; identified by sequence similarity; Hc2 nucleoprotein 463916 hctB 1218097 hctB Chlamydophila caviae GPIC Hc2 nucleoprotein NP_829280.1 463458 D 227941 CDS NP_829281.1 29840175 1218098 464066..465001 1 NC_003361.3 similar to GB:Z33880, and PID:535939; identified by sequence similarity; hypothetical protein 465001 1218098 CCA00413 Chlamydophila caviae GPIC hypothetical protein NP_829281.1 464066 D 227941 CDS NP_829282.1 29840176 1218099 464998..465708 1 NC_003361.3 similar to GP:7190360; identified by sequence similarity; tetrapyrrole methylase 465708 1218099 CCA00414 Chlamydophila caviae GPIC tetrapyrrole methylase NP_829282.1 464998 D 227941 CDS NP_829283.1 29840177 1218100 complement(465728..465961) 1 NC_003361.3 hypothetical protein 465961 1218100 CCA00415 Chlamydophila caviae GPIC hypothetical protein NP_829283.1 465728 R 227941 CDS NP_829284.1 29840178 1218101 466367..467674 1 NC_003361.3 similar to GP:7190361, and GP:7190361; identified by sequence similarity; hypothetical protein 467674 1218101 CCA00416 Chlamydophila caviae GPIC hypothetical protein NP_829284.1 466367 D 227941 CDS NP_829285.1 29840179 1218102 complement(467723..469258) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03634; hypothetical protein 469258 1218102 CCA00417 Chlamydophila caviae GPIC hypothetical protein NP_829285.1 467723 R 227941 CDS NP_829286.1 29840180 1218103 complement(469320..470447) 1 NC_003361.3 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 470447 1218103 CCA00418 Chlamydophila caviae GPIC coproporphyrinogen III oxidase NP_829286.1 469320 R 227941 CDS NP_829287.1 29840181 1218104 complement(470437..470883) 1 NC_003361.3 hypothetical protein 470883 1218104 CCA00419 Chlamydophila caviae GPIC hypothetical protein NP_829287.1 470437 R 227941 CDS NP_829288.1 29840182 1218105 471038..473764 1 NC_003361.3 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 473764 sucA 1218105 sucA Chlamydophila caviae GPIC 2-oxoglutarate dehydrogenase E1 NP_829288.1 471038 D 227941 CDS NP_829289.1 29840183 1218106 473761..474858 1 NC_003361.3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 474858 sucB 1218106 sucB Chlamydophila caviae GPIC dihydrolipoamide succinyltransferase NP_829289.1 473761 D 227941 CDS NP_829290.1 29840184 1218107 complement(474863..475603) 1 NC_003361.3 similar to GB:M16753, PID:143529, GB:M16753, and PID:143529; identified by sequence similarity; hypothetical protein 475603 1218107 CCA00422 Chlamydophila caviae GPIC hypothetical protein NP_829290.1 474863 R 227941 CDS NP_829291.1 29840185 1218108 complement(475619..477439) 1 NC_003361.3 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-clclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; these proteins appear to consist of duplicate domains as compared to Escherichia coli IspG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 477439 gcpE 1218108 gcpE Chlamydophila caviae GPIC 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase NP_829291.1 475619 R 227941 CDS NP_829292.1 29840186 1218109 complement(477772..478974) 1 NC_003361.3 hypothetical protein 478974 1218109 CCA00424 Chlamydophila caviae GPIC hypothetical protein NP_829292.1 477772 R 227941 CDS NP_829293.1 29840187 1218110 complement(479074..480048) 1 NC_003361.3 hypothetical protein 480048 1218110 CCA00425 Chlamydophila caviae GPIC hypothetical protein NP_829293.1 479074 R 227941 CDS NP_829294.1 29840188 1218111 complement(480422..481561) 1 NC_003361.3 identified by match to PFAM protein family HMM PF01661; hypothetical protein 481561 1218111 CCA00426 Chlamydophila caviae GPIC hypothetical protein NP_829294.1 480422 R 227941 CDS NP_829295.1 29840189 1218112 complement(481785..482060) 1 NC_003361.3 similar to GB:U02462, and PID:407294; identified by sequence similarity; ferredoxin 482060 fer4 1218112 fer4 Chlamydophila caviae GPIC ferredoxin NP_829295.1 481785 R 227941 CDS NP_829296.1 29840190 1218113 482340..484097 1 NC_003361.3 similar to GB:U02462, and PID:407294; identified by sequence similarity; type III secretion system protein 484097 flhA 1218113 flhA Chlamydophila caviae GPIC type III secretion system protein NP_829296.1 482340 D 227941 CDS NP_829297.1 29840191 1218114 484199..484972 1 NC_003361.3 expressed in response to temperature increase; may be involved in expression of genes involved in the developmental cycle of Chlamydia; RNA polymerase sigma factor sigma-28 484972 1218114 CCA00429 Chlamydophila caviae GPIC RNA polymerase sigma factor sigma-28 NP_829297.1 484199 D 227941 CDS NP_829298.1 29840192 1218115 complement(484969..485247) 1 NC_003361.3 hypothetical protein 485247 1218115 CCA00430 Chlamydophila caviae GPIC hypothetical protein NP_829298.1 484969 R 227941 CDS NP_829299.1 29840193 1218116 485409..486647 1 NC_003361.3 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 486647 tyrS 1218116 tyrS Chlamydophila caviae GPIC tyrosyl-tRNA synthetase NP_829299.1 485409 D 227941 CDS NP_829300.1 29840194 1218117 486664..488109 1 NC_003361.3 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 488109 gnd 1218117 gnd Chlamydophila caviae GPIC 6-phosphogluconate dehydrogenase NP_829300.1 486664 D 227941 CDS NP_829301.1 29840195 1218118 complement(488331..490139) 1 NC_003361.3 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 490139 lepA 1218118 lepA Chlamydophila caviae GPIC GTP-binding protein LepA NP_829301.1 488331 R 227941 CDS NP_829302.1 29840196 1218119 490384..491739 1 NC_003361.3 similar to GP:7189329, and GP:7189329; identified by sequence similarity; hypothetical protein 491739 1218119 CCA00434 Chlamydophila caviae GPIC hypothetical protein NP_829302.1 490384 D 227941 CDS NP_829303.1 29840197 1218120 complement(491803..493404) 1 NC_003361.3 similar to GP:7190377; identified by sequence similarity; ADP, ATP carrier protein 493404 tlc-2 1218120 tlc-2 Chlamydophila caviae GPIC ADP, ATP carrier protein NP_829303.1 491803 R 227941 CDS NP_829304.1 29840198 1218121 complement(493628..494131) 1 NC_003361.3 hypothetical protein 494131 1218121 CCA00436 Chlamydophila caviae GPIC hypothetical protein NP_829304.1 493628 R 227941 CDS NP_829305.1 29840199 1218122 494620..495585 1 NC_003361.3 similar to GB:M63957, SP:P30720, PID:151242, and PID:999193; identified by sequence similarity; ABC transporter periplasmic substrate-binding protein 495585 1218122 CCA00437 Chlamydophila caviae GPIC ABC transporter periplasmic substrate-binding protein NP_829305.1 494620 D 227941 CDS NP_829306.1 29840200 1218123 495582..496361 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR01662; ABC transporter ATP-binding protein 496361 1218123 CCA00438 Chlamydophila caviae GPIC ABC transporter ATP-binding protein NP_829306.1 495582 D 227941 CDS NP_829307.1 29840201 1218124 496362..497711 1 NC_003361.3 identified by match to PFAM protein family HMM PF02653; ABC transporter permease 497711 1218124 CCA00439 Chlamydophila caviae GPIC ABC transporter permease NP_829307.1 496362 D 227941 CDS NP_829308.1 29840202 1218125 497708..498691 1 NC_003361.3 similar to GB:X78435, SP:P48226, and PID:468559; identified by sequence similarity; ABC transporter permease 498691 1218125 CCA00440 Chlamydophila caviae GPIC ABC transporter permease NP_829308.1 497708 D 227941 CDS NP_829309.1 29840203 1218126 498732..499871 1 NC_003361.3 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 499871 dxr 1218126 dxr Chlamydophila caviae GPIC 1-deoxy-D-xylulose 5-phosphate reductoisomerase NP_829309.1 498732 D 227941 CDS NP_829310.1 29840204 1218127 499884..501752 1 NC_003361.3 similar to GB:X78435, SP:P48226, and PID:468559; identified by sequence similarity; zinc protease 501752 1218127 CCA00442 Chlamydophila caviae GPIC zinc protease NP_829310.1 499884 D 227941 CDS NP_829311.1 29840205 1218128 complement(501703..502683) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02684; hypothetical protein 502683 1218128 CCA00443 Chlamydophila caviae GPIC hypothetical protein NP_829311.1 501703 R 227941 CDS NP_829312.1 29840206 1218129 complement(502792..503895) 1 NC_003361.3 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 503895 recF 1218129 recF Chlamydophila caviae GPIC recombination protein F NP_829312.1 502792 R 227941 CDS NP_829313.1 29840207 1218130 complement(503895..504995) 1 NC_003361.3 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 504995 dnaN 1218130 dnaN Chlamydophila caviae GPIC DNA polymerase III subunit beta NP_829313.1 503895 R 227941 CDS NP_829314.1 29840208 1218131 505234..505686 1 NC_003361.3 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 505686 smpB 1218131 smpB Chlamydophila caviae GPIC SsrA-binding protein NP_829314.1 505234 D 227941 CDS NP_829315.1 29840209 1218132 complement(505667..506614) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02424; thiamine biosynthesis lipoprotein 506614 apbE 1218132 apbE Chlamydophila caviae GPIC thiamine biosynthesis lipoprotein NP_829315.1 505667 R 227941 CDS NP_829316.1 29840210 1218133 complement(506584..507447) 1 NC_003361.3 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 507447 folD 1218133 folD Chlamydophila caviae GPIC bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase NP_829316.1 506584 R 227941 CDS NP_829317.1 29840211 1218134 complement(507438..507953) 1 NC_003361.3 similar to GP:7190393; identified by sequence similarity; hypothetical protein 507953 1218134 CCA00449 Chlamydophila caviae GPIC hypothetical protein NP_829317.1 507438 R 227941 CDS NP_829318.1 29840212 1218135 508155..508445 1 NC_003361.3 similar to GB:U14003, SP:P39303, PID:537036, GB:U00096, PID:2367359, GB:U14003, SP:P39303, PID:537036, GB:U00096, and PID:2367359; identified by sequence similarity; LtuB protein 508445 ltuB 1218135 ltuB Chlamydophila caviae GPIC LtuB protein NP_829318.1 508155 D 227941 CDS NP_829319.1 29840213 1218136 508818..510557 1 NC_003361.3 similar to GB:U14003, SP:P39303, PID:537036, GB:U00096, and PID:2367359; identified by sequence similarity; hypothetical protein 510557 1218136 CCA00451 Chlamydophila caviae GPIC hypothetical protein NP_829319.1 508818 D 227941 CDS NP_829320.1 29840214 1218137 510568..511053 1 NC_003361.3 hypothetical protein 511053 1218137 CCA00452 Chlamydophila caviae GPIC hypothetical protein NP_829320.1 510568 D 227941 CDS NP_829321.1 29840215 1218138 complement(511050..512105) 1 NC_003361.3 similar to GP:2444077; identified by sequence similarity; phospholipase D 512105 1218138 CCA00453 Chlamydophila caviae GPIC phospholipase D NP_829321.1 511050 R 227941 CDS NP_829322.1 29840216 1218139 complement(512211..513956) 1 NC_003361.3 similar to SP:O34023, GB:D14607, and PID:540502; identified by sequence similarity; hypothetical protein 513956 1218139 CCA00454 Chlamydophila caviae GPIC hypothetical protein NP_829322.1 512211 R 227941 CDS NP_829323.1 29840217 1218140 complement(513975..514244) 1 NC_003361.3 required for 70S ribosome assembly; 50S ribosomal protein L28 514244 rpmB 1218140 rpmB Chlamydophila caviae GPIC 50S ribosomal protein L28 NP_829323.1 513975 R 227941 CDS NP_829324.1 29840218 1218141 complement(514414..516006) 1 NC_003361.3 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 516006 malQ 1218141 malQ Chlamydophila caviae GPIC 4-alpha-glucanotransferase NP_829324.1 514414 R 227941 CDS NP_829325.1 29840219 1218142 complement(516063..516503) 1 NC_003361.3 similar to GP:2444074; identified by sequence similarity; type III secretion chaperone 516503 sycE 1218142 sycE Chlamydophila caviae GPIC type III secretion chaperone NP_829325.1 516063 R 227941 CDS NP_829326.1 29840220 1218143 complement(516519..517712) 1 NC_003361.3 similar to GB:M63957, SP:P30718, GB:U17072, PID:151243, PID:999194, GB:M63957, SP:P30718, GB:U17072, PID:151243, and PID:999194; identified by sequence similarity; copN protein 517712 copN 1218143 copN Chlamydophila caviae GPIC copN protein NP_829326.1 516519 R 227941 CDS NP_829327.1 29840221 1218144 complement(517743..519872) 1 NC_003361.3 similar to GB:L27528, SP:P38098, PID:440837, PID:451651, and PID:1750385; identified by sequence similarity; type III secretion inner membrane protein SctV 519872 sctV 1218144 sctV Chlamydophila caviae GPIC type III secretion inner membrane protein SctV NP_829327.1 517743 R 227941 CDS NP_829328.1 29840222 1218145 complement(519872..520954) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02695; type III secretion system protein 520954 1218145 CCA00460 Chlamydophila caviae GPIC type III secretion system protein NP_829328.1 519872 R 227941 CDS NP_829329.1 29840223 1218146 521317..522411 1 NC_003361.3 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 522411 1218146 CCA00461 Chlamydophila caviae GPIC GTP-dependent nucleic acid-binding protein EngD NP_829329.1 521317 D 227941 CDS NP_829330.1 29840224 1218147 complement(522389..523303) 1 NC_003361.3 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 523303 ribF 1218147 ribF Chlamydophila caviae GPIC bifunctional riboflavin kinase/FMN adenylyltransferase NP_829330.1 522389 R 227941 CDS NP_829331.1 29840225 1218149 complement(524035..524397) 1 NC_003361.3 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 524397 rbfA 1218149 rbfA Chlamydophila caviae GPIC ribosome-binding factor A NP_829331.1 524035 R 227941 CDS NP_829332.1 29840226 1218150 complement(524404..527067) 1 NC_003361.3 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 527067 infB 1218150 infB Chlamydophila caviae GPIC translation initiation factor IF-2 NP_829332.1 524404 R 227941 CDS NP_829333.1 29840227 1218151 complement(527024..528328) 1 NC_003361.3 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 528328 nusA 1218151 nusA Chlamydophila caviae GPIC transcription elongation factor NusA NP_829333.1 527024 R 227941 CDS NP_829334.1 29840228 1218152 complement(528421..530166) 1 NC_003361.3 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 530166 rpsA 1218152 rpsA Chlamydophila caviae GPIC 30S ribosomal protein S1 NP_829334.1 528421 R 227941 CDS NP_829335.1 29840229 1218153 530335..531270 1 NC_003361.3 similar to GB:L19685, and PID:404771; identified by sequence similarity; thioredoxin reductase 531270 trxB 1218153 trxB Chlamydophila caviae GPIC thioredoxin reductase NP_829335.1 530335 D 227941 CDS NP_829336.1 29840230 1218154 complement(531262..531630) 1 NC_003361.3 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 531630 acpS 1218154 acpS Chlamydophila caviae GPIC 4'-phosphopantetheinyl transferase NP_829336.1 531262 R 227941 CDS NP_829337.1 29840231 1218155 complement(531646..532092) 1 NC_003361.3 similar to SP:P11895, GB:M35124, SP:P16077, GB:X05813, GB:X13521, PID:14584, PID:147886, PID:148608, PID:42375, PID:42645, SP:P11895, GB:M35124, SP:P16077, GB:X05813, GB:X13521, PID:14584, PID:147886, PID:148608, PID:42375, and PID:42645; identified by sequence similarity; hypothetical protein 532092 1218155 CCA00470 Chlamydophila caviae GPIC hypothetical protein NP_829337.1 531646 R 227941 CDS NP_829338.1 29840232 1218156 532162..533052 1 NC_003361.3 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 533052 lgt 1218156 lgt Chlamydophila caviae GPIC prolipoprotein diacylglyceryl transferase NP_829338.1 532162 D 227941 CDS NP_829339.1 29840233 1218157 533148..535532 1 NC_003361.3 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 535532 1218157 CCA00472 Chlamydophila caviae GPIC inner membrane protein translocase component YidC NP_829339.1 533148 D 227941 CDS NP_829340.1 29840234 1218158 535600..536982 1 NC_003361.3 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 536982 dnaA 1218158 dnaA Chlamydophila caviae GPIC chromosome replication initiator DnaA NP_829340.1 535600 D 227941 CDS NP_829341.1 29840235 1218159 complement(536979..537374) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03376; hypothetical protein 537374 1218159 CCA00474 Chlamydophila caviae GPIC hypothetical protein NP_829341.1 536979 R 227941 CDS NP_829342.1 29840236 1218160 537530..539980 1 NC_003361.3 similar to GB:M17642, SP:P11469, PID:142968, and GB:AL009126; identified by sequence similarity; glycogen phosphorylase 539980 glgP 1218160 glgP Chlamydophila caviae GPIC glycogen phosphorylase NP_829342.1 537530 D 227941 CDS NP_829343.1 29840237 1218161 complement(540054..541340) 1 NC_003361.3 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 541340 pdhC 1218161 pdhC Chlamydophila caviae GPIC branched-chain alpha-keto acid dehydrogenase subunit E2 NP_829343.1 540054 R 227941 CDS NP_829344.1 29840238 1218162 complement(541345..542331) 1 NC_003361.3 similar to GB:M17642, SP:P11469, PID:142968, and GB:AL009126; identified by sequence similarity; pyruvate dehydrogenase, E1 component subunit beta 542331 pdhB 1218162 pdhB Chlamydophila caviae GPIC pyruvate dehydrogenase, E1 component subunit beta NP_829344.1 541345 R 227941 CDS NP_829345.1 29840239 1218163 complement(542324..543349) 1 NC_003361.3 similar to GB:M17642, SP:P11469, PID:142968, and GB:AL009126; identified by sequence similarity; pyruvate dehydrogenase, E1 component subunit alpha 543349 pdhA 1218163 pdhA Chlamydophila caviae GPIC pyruvate dehydrogenase, E1 component subunit alpha NP_829345.1 542324 R 227941 CDS NP_829346.1 29840240 1218165 complement(544549..545628) 1 NC_003361.3 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 545628 lpxD 1218165 lpxD Chlamydophila caviae GPIC UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase NP_829346.1 544549 R 227941 CDS NP_829347.1 29840241 1218166 complement(545656..546195) 1 NC_003361.3 identified by match to PFAM protein family HMM PF04102; cationic outer membrane protein OmpH 546195 1218166 CCA00481 Chlamydophila caviae GPIC cationic outer membrane protein OmpH NP_829347.1 545656 R 227941 CDS NP_829348.1 29840242 1218167 complement(546304..548676) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03072; hypothetical protein 548676 1218167 CCA00482 Chlamydophila caviae GPIC hypothetical protein NP_829348.1 546304 R 227941 CDS NP_829349.1 29840243 1218168 complement(548848..549450) 1 NC_003361.3 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 549450 recR 1218168 recR Chlamydophila caviae GPIC recombination protein RecR NP_829349.1 548848 R 227941 CDS NP_829350.1 29840244 1218169 549571..550578 1 NC_003361.3 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 550578 fabH 1218169 fabH Chlamydophila caviae GPIC 3-oxoacyl-ACP synthase NP_829350.1 549571 D 227941 CDS NP_829351.1 29840245 1218170 550582..551508 1 NC_003361.3 identified by match to PFAM protein family HMM PF03861; ACP S-malonyltransferase 551508 fabD 1218170 fabD Chlamydophila caviae GPIC ACP S-malonyltransferase NP_829351.1 550582 D 227941 CDS NP_829352.1 29840246 1218171 551513..552259 1 NC_003361.3 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 552259 fabG 1218171 fabG Chlamydophila caviae GPIC 3-ketoacyl-ACP reductase NP_829352.1 551513 D 227941 CDS NP_829353.1 29840247 1218172 552371..552604 1 NC_003361.3 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 552604 acpP 1218172 acpP Chlamydophila caviae GPIC acyl carrier protein NP_829353.1 552371 D 227941 CDS NP_829354.1 29840248 1218173 complement(552723..553142) 1 NC_003361.3 similar to GB:X69957, SP:P43148, and PID:396259; identified by sequence similarity; cyclic nucleotide-binding protein 553142 1218173 CCA00488 Chlamydophila caviae GPIC cyclic nucleotide-binding protein NP_829354.1 552723 R 227941 CDS NP_829355.1 29840249 1218174 complement(553157..555934) 1 NC_003361.3 similar to GB:X69957, SP:P43148, and PID:396259; identified by sequence similarity; hypothetical protein 555934 1218174 CCA00489 Chlamydophila caviae GPIC hypothetical protein NP_829355.1 553157 R 227941 CDS NP_829356.1 29840250 1218175 complement(556036..556596) 1 NC_003361.3 similar to GB:D10208, SP:P49250, PID:216723, GB:D10208, SP:P49250, and PID:216723; identified by sequence similarity; inclusion membrane protein C 556596 incC 1218175 incC Chlamydophila caviae GPIC inclusion membrane protein C NP_829356.1 556036 R 227941 CDS NP_829357.1 29840251 1218176 complement(556633..557229) 1 NC_003361.3 similar to GB:D10208, SP:P49250, PID:216723, GB:D10208, SP:P49250, and PID:216723; identified by sequence similarity; inclusion membrane protein B 557229 incB 1218176 incB Chlamydophila caviae GPIC inclusion membrane protein B NP_829357.1 556633 R 227941 CDS NP_829358.1 29840252 1218177 complement(557315..558796) 1 NC_003361.3 similar to GB:D21270, and PID:600252; identified by sequence similarity; sodium-dependent transporter 558796 1218177 CCA00492 Chlamydophila caviae GPIC sodium-dependent transporter NP_829358.1 557315 R 227941 CDS NP_829359.1 29840253 1218178 complement(558802..560022) 1 NC_003361.3 similar to GB:M88104, SP:P28617, PID:142447, GB:M88104, SP:P28617, and PID:142447; identified by sequence similarity; sodium:dicarboxylate symporter family protein 560022 aaaT 1218178 aaaT Chlamydophila caviae GPIC sodium:dicarboxylate symporter family protein NP_829359.1 558802 R 227941 CDS NP_829360.1 29840254 1218179 560127..561293 1 NC_003361.3 similar to GB:M25260, SP:P26778, and PID:304172; identified by sequence similarity; hypothetical protein 561293 1218179 CCA00494 Chlamydophila caviae GPIC hypothetical protein NP_829360.1 560127 D 227941 CDS NP_829361.1 29840255 1218180 561576..563708 1 NC_003361.3 similar to GB:M25260, SP:P26778, PID:304172, GB:M25260, SP:P26778, and PID:304172; identified by sequence similarity; hypothetical protein 563708 1218180 CCA00495 Chlamydophila caviae GPIC hypothetical protein NP_829361.1 561576 D 227941 CDS NP_829362.1 29840256 1218181 563735..565147 1 NC_003361.3 identified by match to PFAM protein family HMM PF02466; magnesium transporter 565147 mgtE 1218181 mgtE Chlamydophila caviae GPIC magnesium transporter NP_829362.1 563735 D 227941 CDS NP_829363.1 29840257 1218182 565287..566702 1 NC_003361.3 similar to GB:M25260, SP:P26778, PID:304172, GB:M25260, SP:P26778, and PID:304172; identified by sequence similarity; hypothetical protein 566702 1218182 CCA00497 Chlamydophila caviae GPIC hypothetical protein NP_829363.1 565287 D 227941 CDS NP_829364.1 29840258 1218183 complement(566816..568216) 1 NC_003361.3 similar to GB:M17643, SP:P10728, PID:143614, PID:1303999, and GB:AL009126; identified by sequence similarity; amino acid antiporter 568216 xasA 1218183 xasA Chlamydophila caviae GPIC amino acid antiporter NP_829364.1 566816 R 227941 CDS NP_829365.1 29840259 1218184 complement(568234..569283) 1 NC_003361.3 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 569283 fbaB 1218184 fbaB Chlamydophila caviae GPIC fructose-bisphosphate aldolase NP_829365.1 568234 R 227941 CDS NP_829366.1 29840260 1218185 569450..571327 1 NC_003361.3 similar to GP:7190527, and GP:7190527; identified by sequence similarity; hypothetical protein 571327 1218185 CCA00500 Chlamydophila caviae GPIC hypothetical protein NP_829366.1 569450 D 227941 CDS NP_829367.1 29840261 1218186 571514..572539 1 NC_003361.3 similar to GB:M87483, SP:Q02000, and PID:149518; identified by sequence similarity; ABC transporter ATP-binding protein 572539 1218186 CCA00501 Chlamydophila caviae GPIC ABC transporter ATP-binding protein NP_829367.1 571514 D 227941 CDS NP_829368.1 29840262 1218187 572552..573217 1 NC_003361.3 similar to GB:M87483, SP:Q02000, and PID:149518; identified by sequence similarity; ABC transporter permease 573217 1218187 CCA00502 Chlamydophila caviae GPIC ABC transporter permease NP_829368.1 572552 D 227941 CDS NP_829369.1 29840263 1218188 573214..574017 1 NC_003361.3 similar to GB:M87483, SP:Q02000, and PID:149518; identified by sequence similarity; YaeC family lipoprotein 574017 1218188 CCA00503 Chlamydophila caviae GPIC YaeC family lipoprotein NP_829369.1 573214 D 227941 CDS NP_829370.1 29840264 1218189 574069..574161 1 NC_003361.3 hypothetical protein 574161 1218189 CCA00504 Chlamydophila caviae GPIC hypothetical protein NP_829370.1 574069 D 227941 CDS NP_829371.1 29840265 1218190 574511..574861 1 NC_003361.3 similar to GB:D10483, SP:P31553, GB:X73904, PID:216465, PID:563861, GB:U00096, and PID:1786224; identified by sequence similarity; hypothetical protein 574861 1218190 CCA00505 Chlamydophila caviae GPIC hypothetical protein NP_829371.1 574511 D 227941 CDS NP_829372.1 29840266 1218191 574865..577285 1 NC_003361.3 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 577285 gyrB 1218191 gyrB Chlamydophila caviae GPIC DNA gyrase subunit B NP_829372.1 574865 D 227941 CDS NP_829373.1 29840267 1218192 577301..579793 1 NC_003361.3 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 579793 gyrA 1218192 gyrA Chlamydophila caviae GPIC DNA gyrase subunit A NP_829373.1 577301 D 227941 CDS NP_829374.1 29840268 1218193 579805..580428 1 NC_003361.3 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 580428 tmk 1218193 tmk Chlamydophila caviae GPIC thymidylate kinase NP_829374.1 579805 D 227941 CDS NP_829375.1 29840269 1218194 580419..581285 1 NC_003361.3 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 581285 1218194 CCA00509 Chlamydophila caviae GPIC DNA polymerase III subunit delta' NP_829375.1 580419 D 227941 CDS NP_829376.1 29840270 1218195 complement(581282..582004) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02230; serine esterase 582004 1218195 CCA00510 Chlamydophila caviae GPIC serine esterase NP_829376.1 581282 R 227941 CDS NP_829377.1 29840271 1218196 582317..583174 1 NC_003361.3 identified by match to PFAM protein family HMM PF01300; Sua5/YciO/YrdC family protein 583174 1218196 CCA00511 Chlamydophila caviae GPIC Sua5/YciO/YrdC family protein NP_829377.1 582317 D 227941 CDS NP_829378.1 29840272 1218197 583179..584153 1 NC_003361.3 similar to GB:L06332, SP:P36913, and PID:148696; identified by sequence similarity; dipeptidase 584153 1218197 CCA00512 Chlamydophila caviae GPIC dipeptidase NP_829378.1 583179 D 227941 CDS NP_829379.1 29840273 1218198 complement(584219..585340) 1 NC_003361.3 similar to SP:P35579; identified by sequence similarity; hypothetical protein 585340 1218198 CCA00513 Chlamydophila caviae GPIC hypothetical protein NP_829379.1 584219 R 227941 CDS NP_829380.1 29840274 1218199 complement(585596..586735) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03334; hypothetical protein 586735 1218199 CCA00514 Chlamydophila caviae GPIC hypothetical protein NP_829380.1 585596 R 227941 CDS NP_829381.1 29840275 1218201 587725..588615 1 NC_003361.3 UbiA prenyltransferase catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 588615 ubiA 1218201 ubiA Chlamydophila caviae GPIC prenyltransferase NP_829381.1 587725 D 227941 CDS NP_829382.1 29840276 1218202 588631..589209 1 NC_003361.3 similar to SP:P33751; identified by sequence similarity; aromatic acid decarboxylase 589209 1218202 CCA00517 Chlamydophila caviae GPIC aromatic acid decarboxylase NP_829382.1 588631 D 227941 CDS NP_829383.1 29840277 1218203 complement(589206..590099) 1 NC_003361.3 similar to GB:Z34287, SP:P39781, PID:498813, and GB:AL009126; identified by sequence similarity; hypothetical protein 590099 1218203 CCA00518 Chlamydophila caviae GPIC hypothetical protein NP_829383.1 589206 R 227941 CDS NP_829384.1 29840278 1218204 complement(590502..591449) 1 NC_003361.3 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 591449 surE 1218204 surE Chlamydophila caviae GPIC stationary phase survival protein SurE NP_829384.1 590502 R 227941 CDS NP_829385.1 29840279 1218205 complement(591691..592530) 1 NC_003361.3 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 592530 surE 1218205 surE Chlamydophila caviae GPIC stationary phase survival protein SurE NP_829385.1 591691 R 227941 CDS NP_829386.1 29840280 1218206 complement(592594..593337) 1 NC_003361.3 similar to GB:M97296, SP:Q03417, PID:155583, GB:M97296, SP:Q03417, and PID:155583; identified by sequence similarity; hypothetical protein 593337 1218206 CCA00521 Chlamydophila caviae GPIC hypothetical protein NP_829386.1 592594 R 227941 CDS NP_829387.1 29840281 1218207 593465..593950 1 NC_003361.3 identified by match to PFAM protein family HMM PF02810; protein translocase subunit 593950 1218207 CCA00522 Chlamydophila caviae GPIC protein translocase subunit NP_829387.1 593465 D 227941 CDS NP_829388.1 29840282 1218208 594340..595182 1 NC_003361.3 similar to GB:M83673, and PID:151093; identified by sequence similarity; hypothetical protein 595182 1218208 CCA00523 Chlamydophila caviae GPIC hypothetical protein NP_829388.1 594340 D 227941 CDS NP_829389.1 29840283 1218209 595185..596048 1 NC_003361.3 similar to GB:M58563, SP:P29720, PID:155067, GB:M58563, SP:P29720, and PID:155067; identified by sequence similarity; hypothetical protein 596048 1218209 CCA00524 Chlamydophila caviae GPIC hypothetical protein NP_829389.1 595185 D 227941 CDS NP_829390.1 29840284 1218210 596055..596858 1 NC_003361.3 similar to GB:M83673, and PID:151093; identified by sequence similarity; hypothetical protein 596858 1218210 CCA00525 Chlamydophila caviae GPIC hypothetical protein NP_829390.1 596055 D 227941 CDS NP_829391.1 29840285 1218211 complement(596890..598272) 1 NC_003361.3 identified by match to PFAM protein family HMM PF04055; MiaB-like tRNA modifying enzyme YliG 598272 1218211 CCA00526 Chlamydophila caviae GPIC MiaB-like tRNA modifying enzyme YliG NP_829391.1 596890 R 227941 CDS NP_829392.1 29840286 1218212 598372..598530 1 NC_003361.3 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 598530 rpmG 1218212 rpmG Chlamydophila caviae GPIC 50S ribosomal protein L33 NP_829392.1 598372 D 227941 CDS NP_829393.1 29840287 1218213 598579..600090 1 NC_003361.3 similar to GB:U09530, GB:Z35104, SP:P46359, PID:493076, and PID:510936; identified by sequence similarity; permease 600090 1218213 CCA00528 Chlamydophila caviae GPIC permease NP_829393.1 598579 D 227941 CDS NP_829394.1 29840288 1218214 600093..600764 1 NC_003361.3 similar to GB:U09530, GB:Z35104, SP:P46359, PID:493076, and PID:510936; identified by sequence similarity; ABC transporter ATP-binding protein 600764 1218214 CCA00529 Chlamydophila caviae GPIC ABC transporter ATP-binding protein NP_829394.1 600093 D 227941 CDS NP_829395.1 29840289 1218215 complement(600767..602041) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02673; hypothetical protein 602041 1218215 CCA00530 Chlamydophila caviae GPIC hypothetical protein NP_829395.1 600767 R 227941 CDS NP_829396.1 29840290 1218216 complement(602238..602387) 1 NC_003361.3 hypothetical protein 602387 1218216 CCA00531 Chlamydophila caviae GPIC hypothetical protein NP_829396.1 602238 R 227941 CDS NP_829397.1 29840291 1218217 602542..602994 1 NC_003361.3 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 602994 rplM 1218217 rplM Chlamydophila caviae GPIC 50S ribosomal protein L13 NP_829397.1 602542 D 227941 CDS NP_829398.1 29840292 1218218 603008..603412 1 NC_003361.3 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 603412 rpsI 1218218 rpsI Chlamydophila caviae GPIC 30S ribosomal protein S9 NP_829398.1 603008 D 227941 CDS NP_829399.1 29840293 1218219 complement(603515..604366) 1 NC_003361.3 similar to GB:Z35107, and PID:510938; identified by sequence similarity; NLP/P60 family protein 604366 1218219 CCA00534 Chlamydophila caviae GPIC NLP/P60 family protein NP_829399.1 603515 R 227941 CDS NP_829400.1 29840294 1218220 complement(604400..605044) 1 NC_003361.3 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 605044 adk 1218220 adk Chlamydophila caviae GPIC adenylate kinase NP_829400.1 604400 R 227941 CDS NP_829401.1 29840295 1218221 605339..606463 1 NC_003361.3 identified by match to PFAM protein family HMM PF02673; hypothetical protein 606463 1218221 CCA00536 Chlamydophila caviae GPIC hypothetical protein NP_829401.1 605339 D 227941 CDS NP_829402.1 29840296 1218222 606518..606940 1 NC_003361.3 similar to GB:Z35105, GB:Z35106, GB:Z38064, GB:Z38065, PID:510890, PID:510892, PID:557752, and PID:557754; identified by sequence similarity; hypothetical protein 606940 1218222 CCA00537 Chlamydophila caviae GPIC hypothetical protein NP_829402.1 606518 D 227941 CDS NP_829403.1 29840297 1218223 607059..608180 1 NC_003361.3 similar to GP:8978614, and GP:8978614; identified by sequence similarity; hypothetical protein 608180 1218223 CCA00538 Chlamydophila caviae GPIC hypothetical protein NP_829403.1 607059 D 227941 CDS NP_829404.1 29840298 1218224 complement(608244..609020) 1 NC_003361.3 catalyzes the formation of 6-phospho-D-gluconate from 6-phospho-D-glucono-1,5-lactone; 6-phosphogluconolactonase 609020 pgl 1218224 pgl Chlamydophila caviae GPIC 6-phosphogluconolactonase NP_829404.1 608244 R 227941 CDS NP_829405.1 29840299 1218225 complement(609044..610579) 1 NC_003361.3 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 610579 zwf 1218225 zwf Chlamydophila caviae GPIC glucose-6-phosphate 1-dehydrogenase NP_829405.1 609044 R 227941 CDS NP_829406.1 29840300 1218226 complement(610878..612464) 1 NC_003361.3 similar to GB:U09005, SP:P40608, and PID:507737; identified by sequence similarity; peptide ABC transporter substrate-binding protein 612464 1218226 CCA00541 Chlamydophila caviae GPIC peptide ABC transporter substrate-binding protein NP_829406.1 610878 R 227941 CDS NP_829407.1 29840301 1218227 complement(612410..613444) 1 NC_003361.3 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 613444 gcp_2 1218227 gcp_2 Chlamydophila caviae GPIC DNA-binding/iron metalloprotein/AP endonuclease NP_829407.1 612410 R 227941 CDS NP_829408.1 29840302 1218228 613527..613970 1 NC_003361.3 similar to GB:U09005, SP:P40608, and PID:507737; identified by sequence similarity; arginine repressor ArgR 613970 argR 1218228 argR Chlamydophila caviae GPIC arginine repressor ArgR NP_829408.1 613527 D 227941 CDS NP_829409.1 29840303 1218229 614016..614669 1 NC_003361.3 similar to GP:8978565; identified by sequence similarity; amino acid ABC transporter permease 614669 glnP 1218229 glnP Chlamydophila caviae GPIC amino acid ABC transporter permease NP_829409.1 614016 D 227941 CDS NP_829410.1 29840304 1218230 614659..615339 1 NC_003361.3 similar to GB:L17309, SP:P39064, PID:348049, PID:2293223, and GB:AL009126; identified by sequence similarity; amino acid ABC transporter ATP-binding protein 615339 glnQ 1218230 glnQ Chlamydophila caviae GPIC amino acid ABC transporter ATP-binding protein NP_829410.1 614659 D 227941 CDS NP_829411.1 29840305 1218231 complement(615379..616752) 1 NC_003361.3 similar to GB:L17309, SP:P39064, PID:348049, PID:2293223, GB:AL009126, GB:L17309, SP:P39064, PID:348049, PID:2293223, and GB:AL009126; identified by sequence similarity; hypothetical protein 616752 1218231 CCA00546 Chlamydophila caviae GPIC hypothetical protein NP_829411.1 615379 R 227941 CDS NP_829412.1 29840306 1218232 complement(616837..620286) 1 NC_003361.3 similar to GP:7189490, and GP:7189490; identified by sequence similarity; hypothetical protein 620286 1218232 CCA00547 Chlamydophila caviae GPIC hypothetical protein NP_829412.1 616837 R 227941 CDS NP_829413.1 29840307 1218233 complement(620283..621575) 1 NC_003361.3 similar to GB:M63957, SP:P30720, PID:151242, PID:999193, GB:M63957, SP:P30720, PID:151242, and PID:999193; identified by sequence similarity; ribonuclease BN family protein 621575 1218233 CCA00548 Chlamydophila caviae GPIC ribonuclease BN family protein NP_829413.1 620283 R 227941 CDS NP_829414.1 29840308 1218234 complement(621655..622467) 1 NC_003361.3 similar to GP:5139640, GB:M14777, GB:S76221, GB:S76223, GB:S76225, GB:S76228, GB:S76232, GB:S76235, GB:S49975, GB:M21866, GB:M21758, GB:M15872, GB:M25627, GB:S76219, SP:P08263, SP:P09210, PID:187132, PID:306809, PID:306810, PID:306815, PID:825605, and PID:951352; identified by sequence similarity; methyltransferase 622467 1218234 CCA00549 Chlamydophila caviae GPIC methyltransferase NP_829414.1 621655 R 227941 CDS NP_829415.1 29840309 1218235 complement(622621..623688) 1 NC_003361.3 similar to GB:M28668, GB:M55131, GB:M55106, GB:M55107, GB:M55108, GB:M55109, GB:M55110, GB:M55111, GB:M55112, GB:M55113, GB:M55114, GB:M55115, GB:M55116, GB:M55117, GB:M55118, GB:M55119, GB:M55120, GB:M55121, GB:M55122, GB:M55123, GB:M55124, GB:M55125, GB:M55126, GB:M55127, GB:M55128, GB:M55129, GB:M55130, GB:X53294, GB:M55025, GB:M55026, GB:M55027, GB:M55028, GB:M55029, GB:M55030, GB:M55031, GB:M55032, GB:M55033, GB:M55034, GB:M55035, GB:M55036, GB:M55037, GB:M57509, GB:M65196, GB:M65197, GB:M65198, GB:M65273, GB:M65274, GB:M65276, GB:M65277, GB:M65278, GB:M65279, GB:M65280, GB:M65281, GB:M65282, GB:M65283, GB:M65284, GB:M65285, GB:M65286, GB:M65288, GB:M58478, GB:M26383, GB:D14283, GB:Z11686, GB:Y00787, SP:P13569, PID:1100104, PID:1669377, PID:1669378, PID:180292, PID:180332, PID:1809238, PID:306538, PID:553225, GB:M28668, GB:M55131, GB:M55106, GB:M55107, GB:M55108, GB:M55109, GB:M55110, GB:M55111, GB:M55112, GB:M55113, GB:M55114, GB:M55115, GB:M55116, GB:M55117, GB:M55118, GB:M55119, GB:M55120, GB:M55121; inclusion membrane protein A 623688 incA 1218235 incA Chlamydophila caviae GPIC inclusion membrane protein A NP_829415.1 622621 R 227941 CDS NP_829416.1 29840310 1218236 624086..624781 1 NC_003361.3 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 624781 rpe 1218236 rpe Chlamydophila caviae GPIC ribulose-phosphate 3-epimerase NP_829416.1 624086 D 227941 CDS NP_829417.1 29840311 1218237 624768..625325 1 NC_003361.3 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 625325 1218237 CCA00552 Chlamydophila caviae GPIC elongation factor P NP_829417.1 624768 D 227941 CDS NP_829418.1 29840312 1218238 625356..625856 1 NC_003361.3 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 625856 accB 1218238 accB Chlamydophila caviae GPIC acetyl-CoA carboxylase biotin carboxyl carrier protein subunit NP_829418.1 625356 D 227941 CDS NP_829419.1 29840313 1218239 625856..627211 1 NC_003361.3 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 627211 accC 1218239 accC Chlamydophila caviae GPIC acetyl-CoA carboxylase biotin carboxylase subunit NP_829419.1 625856 D 227941 CDS NP_829420.1 29840314 1218240 627383..628837 1 NC_003361.3 hypothetical protein 628837 1218240 CCA00555 Chlamydophila caviae GPIC hypothetical protein NP_829420.1 627383 D 227941 CDS NP_829421.1 29840315 1218241 629042..630688 1 NC_003361.3 identified by match to PFAM protein family HMM PF02686; hypothetical protein 630688 1218241 CCA00556 Chlamydophila caviae GPIC hypothetical protein NP_829421.1 629042 D 227941 CDS NP_829422.1 29840316 1218242 complement(630802..631788) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03334; hypothetical protein 631788 1218242 CCA00557 Chlamydophila caviae GPIC hypothetical protein NP_829422.1 630802 R 227941 CDS NP_829423.1 29840317 1218243 632204..642244 1 NC_003361.3 This protein has a UDP-glucose binding domain and a glycosyltransferase domain. See PMID: 9677381 and PMID: 10788427.; similar to GP:7190483; identified by sequence similarity; cytotoxin 642244 1218243 CCA00558 Chlamydophila caviae GPIC cytotoxin NP_829423.1 632204 D 227941 CDS NP_829424.1 29840318 1218244 642703..643941 1 NC_003361.3 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 643941 trpB-1 1218244 trpB-1 Chlamydophila caviae GPIC tryptophan synthase subunit beta NP_829424.1 642703 D 227941 CDS NP_829425.1 29840319 1218246 645812..647533 1 NC_003361.3 similar to GB:X73124, SP:P39577, PID:413925, GB:AL009126, GB:X73124, SP:P39577, PID:413925, and GB:AL009126; identified by sequence similarity; hypothetical protein 647533 1218246 CCA00561 Chlamydophila caviae GPIC hypothetical protein NP_829425.1 645812 D 227941 CDS NP_829426.1 29840320 1218247 647589..647894 1 NC_003361.3 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 647894 trpR 1218247 trpR Chlamydophila caviae GPIC Trp operon repressor NP_829426.1 647589 D 227941 CDS NP_829427.1 29840321 1218248 648125..649156 1 NC_003361.3 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 649156 trpD 1218248 trpD Chlamydophila caviae GPIC anthranilate phosphoribosyltransferase NP_829427.1 648125 D 227941 CDS NP_829428.1 29840322 1218249 649147..649968 1 NC_003361.3 similar to GP:5579054; identified by sequence similarity; indole-3-glycerol phosphate synthase 649968 trpC 1218249 trpC Chlamydophila caviae GPIC indole-3-glycerol phosphate synthase NP_829428.1 649147 D 227941 CDS NP_829429.1 29840323 1218250 649958..650578 1 NC_003361.3 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 650578 trpF 1218250 trpF Chlamydophila caviae GPIC N-(5'-phosphoribosyl)anthranilate isomerase NP_829429.1 649958 D 227941 CDS NP_829430.1 29840324 1218251 650575..651750 1 NC_003361.3 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 651750 trpB-2 1218251 trpB-2 Chlamydophila caviae GPIC tryptophan synthase subunit beta NP_829430.1 650575 D 227941 CDS NP_829431.1 29840325 1218252 651743..652516 1 NC_003361.3 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 652516 trpA 1218252 trpA Chlamydophila caviae GPIC tryptophan synthase subunit alpha NP_829431.1 651743 D 227941 CDS NP_829432.1 29840326 1218253 652528..653805 1 NC_003361.3 similar to GB:L04569, GB:M57971, GB:Z34811, GB:Z34812, GB:Z34821, GB:Z34822, GB:Z34809, GB:Z34810, GB:Z34813, GB:Z34814, GB:Z34815, GB:Z34816, GB:Z34817, GB:Z34818, GB:Z34819, GB:Z34820, GB:M57972, GB:M91370, GB:Z26294, GB:Z26295, PID:291895, PID:501073, PID:508183, PID:508185, PID:508187, PID:508189, PID:508191, PID:508193, PID:508195, PID:508197, PID:508199, PID:508201, PID:509048, PID:509068, PID:509168, PID:509178, PID:509341, PID:509344, GB:L04569, GB:M57971, GB:Z34811, GB:Z34812, GB:Z34821, GB:Z34822, GB:Z34809, GB:Z34810, GB:Z34813, GB:Z34814, GB:Z34815, GB:Z34816, GB:Z34817, GB:Z34818, GB:Z34819, GB:Z34820, GB:M57972, GB:M91370, GB:Z26294, GB:Z26295, PID:291895, PID:501073, PID:508183, PID:508185, PID:508187, PID:508189, PID:508191, PID:508193, PID:508195, PID:508197, PID:508199, PID:508201, PID:509048, PID:509068, PID:509168, PID:509178, PID:509341, and PID:509344; identified by sequence similarity; kynureninase 653805 kynU 1218253 kynU Chlamydophila caviae GPIC kynureninase NP_829432.1 652528 D 227941 CDS NP_829433.1 29840327 1218254 653802..654707 1 NC_003361.3 similar to GP:6968355, and SP:P08330; identified by sequence similarity; ribose-phosphate pyrophosphokinase 654707 prsA 1218254 prsA Chlamydophila caviae GPIC ribose-phosphate pyrophosphokinase NP_829433.1 653802 D 227941 CDS NP_829434.1 29840328 1218255 complement(654997..655821) 1 NC_003361.3 hypothetical protein 655821 1218255 CCA00570 Chlamydophila caviae GPIC hypothetical protein NP_829434.1 654997 R 227941 CDS NP_829435.1 29840329 1218256 655845..655997 1 NC_003361.3 hypothetical protein 655997 1218256 CCA00571 Chlamydophila caviae GPIC hypothetical protein NP_829435.1 655845 D 227941 CDS NP_829436.1 29840330 1218257 complement(656084..657451) 1 NC_003361.3 similar to GP:7190486; identified by sequence similarity; adenosine/AMP deaminase 657451 1218257 CCA00572 Chlamydophila caviae GPIC adenosine/AMP deaminase NP_829436.1 656084 R 227941 CDS NP_829437.1 29840331 1218258 complement(657481..659019) 1 NC_003361.3 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 659019 guaA 1218258 guaA Chlamydophila caviae GPIC GMP synthase NP_829437.1 657481 R 227941 CDS NP_829438.1 29840332 1218259 complement(659035..660108) 1 NC_003361.3 similar to GP:7190488, GB:U10906, SP:P46527, and PID:516559; identified by sequence similarity; inosine-5'-monophosphate dehydrogenase 660108 1218259 CCA00574 Chlamydophila caviae GPIC inosine-5'-monophosphate dehydrogenase NP_829438.1 659035 R 227941 CDS NP_829439.1 29840333 1218260 complement(660435..661319) 1 NC_003361.3 hypothetical protein 661319 1218260 CCA00575 Chlamydophila caviae GPIC hypothetical protein NP_829439.1 660435 R 227941 CDS NP_829440.1 29840334 1218261 661718..662230 1 NC_003361.3 similar to GP:7189507; identified by sequence similarity; hypothetical protein 662230 1218261 CCA00576 Chlamydophila caviae GPIC hypothetical protein NP_829440.1 661718 D 227941 CDS NP_829441.1 29840335 1218262 662231..662323 1 NC_003361.3 hypothetical protein 662323 1218262 CCA00577 Chlamydophila caviae GPIC hypothetical protein NP_829441.1 662231 D 227941 CDS NP_829442.1 29840336 1218263 662455..663297 1 NC_003361.3 hypothetical protein 663297 1218263 CCA00578 Chlamydophila caviae GPIC hypothetical protein NP_829442.1 662455 D 227941 CDS NP_829443.1 29840337 1218264 663541..663987 1 NC_003361.3 similar to GB:S61968, GB:X76688, SP:P46738, GB:S61968, GB:X76688, and SP:P46738; identified by sequence similarity; hypothetical protein 663987 1218264 CCA00579 Chlamydophila caviae GPIC hypothetical protein NP_829443.1 663541 D 227941 CDS NP_829444.1 29840338 1218265 664251..664922 1 NC_003361.3 similar to GB:L01055, SP:P31715, GB:S65052, PID:295156, and PID:410007; identified by sequence similarity; hypothetical protein 664922 1218265 CCA00580 Chlamydophila caviae GPIC hypothetical protein NP_829444.1 664251 D 227941 CDS NP_829445.1 29840339 1218266 665038..666156 1 NC_003361.3 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4, 5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7- deazaguanosine); queuine tRNA-ribosyltransferase 666156 tgt 1218266 tgt Chlamydophila caviae GPIC queuine tRNA-ribosyltransferase NP_829445.1 665038 D 227941 CDS NP_829446.1 29840340 1218267 666407..666853 1 NC_003361.3 similar to GB:X05678, SP:P07788, GB:X07512, PID:39855, PID:39857, PID:1708638, GB:AL009126, GB:X05678, SP:P07788, GB:X07512, PID:39855, PID:39857, PID:1708638, and GB:AL009126; identified by sequence similarity; hypothetical protein 666853 1218267 CCA00582 Chlamydophila caviae GPIC hypothetical protein NP_829446.1 666407 D 227941 CDS NP_829447.1 29840341 1218268 667360..667827 1 NC_003361.3 similar to GB:X05678, SP:P07788, GB:X07512, PID:39855, PID:39857, PID:1708638, GB:AL009126, GB:X05678, SP:P07788, GB:X07512, PID:39855, PID:39857, PID:1708638, and GB:AL009126; identified by sequence similarity; hypothetical protein 667827 1218268 CCA00583 Chlamydophila caviae GPIC hypothetical protein NP_829447.1 667360 D 227941 CDS NP_829448.1 29840342 1218269 668009..668836 1 NC_003361.3 identified by match to PFAM protein family HMM PF00541; hypothetical protein 668836 1218269 CCA00584 Chlamydophila caviae GPIC hypothetical protein NP_829448.1 668009 D 227941 CDS NP_829449.1 29840343 1218270 complement(668961..669071) 1 NC_003361.3 hypothetical protein 669071 1218270 CCA00585 Chlamydophila caviae GPIC hypothetical protein NP_829449.1 668961 R 227941 CDS NP_829450.1 29840344 1218271 669190..669741 1 NC_003361.3 similar to GB:S61968, GB:X76688, SP:P46738, GB:S61968, GB:X76688, and SP:P46738; identified by sequence similarity; hypothetical protein 669741 1218271 CCA00586 Chlamydophila caviae GPIC hypothetical protein NP_829450.1 669190 D 227941 CDS NP_829451.1 29840345 1218272 complement(669924..670334) 1 NC_003361.3 similar to GB:Z28353, and PID:431949; identified by sequence similarity; disulfide oxidoreductase 670334 dsbB 1218272 dsbB Chlamydophila caviae GPIC disulfide oxidoreductase NP_829451.1 669924 R 227941 CDS NP_829452.1 29840346 1218273 complement(670327..671025) 1 NC_003361.3 similar to GB:X73124, SP:P39577, PID:413925, GB:AL009126, GB:X73124, SP:P39577, PID:413925, and GB:AL009126; identified by sequence similarity; hypothetical protein 671025 1218273 CCA00588 Chlamydophila caviae GPIC hypothetical protein NP_829452.1 670327 R 227941 CDS NP_829453.1 29840347 1218274 671130..671252 1 NC_003361.3 hypothetical protein 671252 1218274 CCA00589 Chlamydophila caviae GPIC hypothetical protein NP_829453.1 671130 D 227941 CDS NP_829454.1 29840348 1218275 671234..672460 1 NC_003361.3 identified by match to PFAM protein family HMM PF02497; hypothetical protein 672460 1218275 CCA00590 Chlamydophila caviae GPIC hypothetical protein NP_829454.1 671234 D 227941 CDS NP_829455.1 29840349 1218276 complement(672469..673176) 1 NC_003361.3 similar to GB:X73124, SP:P39577, PID:413925, and GB:AL009126; identified by sequence similarity; hypothetical protein 673176 1218276 CCA00591 Chlamydophila caviae GPIC hypothetical protein NP_829455.1 672469 R 227941 CDS NP_829456.1 29840350 1218277 complement(673161..673868) 1 NC_003361.3 similar to GB:X73124, SP:P39577, PID:413925, and GB:AL009126; identified by sequence similarity; ABC transporter ATP-binding protein 673868 1218277 CCA00592 Chlamydophila caviae GPIC ABC transporter ATP-binding protein NP_829456.1 673161 R 227941 CDS NP_829457.1 29840351 1218278 complement(674146..675039) 1 NC_003361.3 similar to GB:X73124, SP:P39577, PID:413925, GB:AL009126, GB:X73124, SP:P39577, PID:413925, and GB:AL009126; identified by sequence similarity; 5'-methylthioadenosine nucleosidase 675039 1218278 CCA00593 Chlamydophila caviae GPIC 5'-methylthioadenosine nucleosidase NP_829457.1 674146 R 227941 CDS NP_829458.1 29840352 1218279 675011..675235 1 NC_003361.3 hypothetical protein 675235 1218279 CCA00594 Chlamydophila caviae GPIC hypothetical protein NP_829458.1 675011 D 227941 CDS NP_829459.1 29840353 1218280 complement(675212..675901) 1 NC_003361.3 similar to GB:M68877, and PID:152867; identified by sequence similarity; hypothetical protein 675901 1218280 CCA00595 Chlamydophila caviae GPIC hypothetical protein NP_829459.1 675212 R 227941 CDS NP_829460.1 29840354 1218281 676068..676832 1 NC_003361.3 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 676832 kdsB 1218281 kdsB Chlamydophila caviae GPIC 3-deoxy-manno-octulosonate cytidylyltransferase NP_829460.1 676068 D 227941 CDS NP_829461.1 29840355 1218282 676808..678421 1 NC_003361.3 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 678421 pyrG 1218282 pyrG Chlamydophila caviae GPIC CTP synthetase NP_829461.1 676808 D 227941 CDS NP_829462.1 29840356 1218283 678414..678905 1 NC_003361.3 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 678905 1218283 CCA00598 Chlamydophila caviae GPIC Holliday junction resolvase-like protein NP_829462.1 678414 D 227941 CDS NP_829463.1 29840357 1218284 679139..680476 1 NC_003361.3 similar to SP:P24141, GB:L24960, and PID:407009; identified by sequence similarity; peptide ABC transporter periplasmic binding protein 680476 1218284 CCA00599 Chlamydophila caviae GPIC peptide ABC transporter periplasmic binding protein NP_829463.1 679139 D 227941 CDS NP_829464.1 29840358 1218285 680595..682202 1 NC_003361.3 similar to SP:P24141; identified by sequence similarity; peptide ABC transporter periplasmic binding protein 682202 1218285 CCA00600 Chlamydophila caviae GPIC peptide ABC transporter periplasmic binding protein NP_829464.1 680595 D 227941 CDS NP_829465.1 29840359 1218286 682338..683975 1 NC_003361.3 similar to SP:P24141, GB:Z28353, and PID:431949; identified by sequence similarity; peptide ABC transporter periplasmic binding protein 683975 oppA 1218286 oppA Chlamydophila caviae GPIC peptide ABC transporter periplasmic binding protein NP_829465.1 682338 D 227941 CDS NP_829466.1 29840360 1218287 684202..685185 1 NC_003361.3 similar to GP:8978572; identified by sequence similarity; peptide ABC transporter permease 685185 1218287 CCA00602 Chlamydophila caviae GPIC peptide ABC transporter permease NP_829466.1 684202 D 227941 CDS NP_829467.1 29840361 1218288 685193..686101 1 NC_003361.3 similar to SP:P00800, GB:X76986, PID:441267, and PID:512558; identified by sequence similarity; peptide ABC transporter permease 686101 oppC_1 1218288 oppC_1 Chlamydophila caviae GPIC peptide ABC transporter permease NP_829467.1 685193 D 227941 CDS NP_829468.1 29840362 1218289 686094..686960 1 NC_003361.3 similar to SP:P00800, GB:X76986, PID:441267, and PID:512558; identified by sequence similarity; peptide ABC transporter ATP-binding protein 686960 oppD 1218289 oppD Chlamydophila caviae GPIC peptide ABC transporter ATP-binding protein NP_829468.1 686094 D 227941 CDS NP_829469.1 29840363 1218290 686953..687738 1 NC_003361.3 similar to SP:P00800, GB:X76986, PID:441267, and PID:512558; identified by sequence similarity; peptide ABC transporter ATP-binding protein 687738 1218290 CCA00605 Chlamydophila caviae GPIC peptide ABC transporter ATP-binding protein NP_829469.1 686953 D 227941 CDS NP_829470.1 29840364 1218291 688027..688782 1 NC_003361.3 similar to GB:M37842, SP:P11000, and PID:153858; identified by sequence similarity; hypothetical protein 688782 1218291 CCA00606 Chlamydophila caviae GPIC hypothetical protein NP_829470.1 688027 D 227941 CDS NP_829471.1 29840365 1218292 688829..690241 1 NC_003361.3 similar to GP:8978580; identified by sequence similarity; sodium:sulfate symporter family protein 690241 1218292 CCA00607 Chlamydophila caviae GPIC sodium:sulfate symporter family protein NP_829471.1 688829 D 227941 CDS NP_829472.1 29840366 1218293 690350..692005 1 NC_003361.3 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 692005 1218293 CCA00608 Chlamydophila caviae GPIC diphosphate--fructose-6-phosphate 1-phosphotransferase NP_829472.1 690350 D 227941 CDS NP_829473.1 29840367 1218294 692128..692940 1 NC_003361.3 similar to GB:X78729, SP:P45600, and PID:511012; identified by sequence similarity; dienelactone hydrolase 692940 1218294 CCA00609 Chlamydophila caviae GPIC dienelactone hydrolase NP_829473.1 692128 D 227941 CDS NP_829474.1 29840368 1218295 692950..694569 1 NC_003361.3 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 694569 1218295 CCA00610 Chlamydophila caviae GPIC diphosphate--fructose-6-phosphate 1-phosphotransferase NP_829474.1 692950 D 227941 CDS NP_829475.1 29840369 1218296 complement(694839..696143) 1 NC_003361.3 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 696143 kdtA 1218296 kdtA Chlamydophila caviae GPIC 3-deoxy-D-manno-octulosonic-acid transferase NP_829475.1 694839 R 227941 CDS NP_829476.1 29840370 1218297 complement(696140..698602) 1 NC_003361.3 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 698602 leuS 1218297 leuS Chlamydophila caviae GPIC leucyl-tRNA synthetase NP_829476.1 696140 R 227941 CDS NP_829477.1 29840371 1218298 698658..698783 1 NC_003361.3 hypothetical protein 698783 1218298 CCA00613 Chlamydophila caviae GPIC hypothetical protein NP_829477.1 698658 D 227941 CDS NP_829478.1 29840372 1218299 698834..699781 1 NC_003361.3 similar to SP:P11895, GB:M35124, SP:P16077, GB:X05813, GB:X13521, PID:14584, PID:147886, PID:148608, PID:42375, and PID:42645; identified by sequence similarity; hypothetical protein 699781 1218299 CCA00614 Chlamydophila caviae GPIC hypothetical protein NP_829478.1 698834 D 227941 CDS NP_829479.1 29840373 1218300 699929..701449 1 NC_003361.3 similar to SP:P11895, GB:M35124, SP:P16077, GB:X05813, GB:X13521, PID:14584, PID:147886, PID:148608, PID:42375, PID:42645, SP:P11895, GB:M35124, SP:P16077, GB:X05813, GB:X13521, PID:14584, PID:147886, PID:148608, PID:42375, and PID:42645; identified by sequence similarity; hypothetical protein 701449 1218300 CCA00615 Chlamydophila caviae GPIC hypothetical protein NP_829479.1 699929 D 227941 CDS NP_829480.1 29840374 1218301 complement(701508..705884) 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR01870; hypothetical protein 705884 1218301 CCA00616 Chlamydophila caviae GPIC hypothetical protein NP_829480.1 701508 R 227941 CDS NP_829481.1 29840375 1218302 complement(706045..708033) 1 NC_003361.3 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 708033 ligA 1218302 ligA Chlamydophila caviae GPIC NAD-dependent DNA ligase LigA NP_829481.1 706045 R 227941 CDS NP_829482.1 29840376 1218303 complement(708041..709897) 1 NC_003361.3 similar to GP:7189538; identified by sequence similarity; protein kinase 709897 1218303 CCA00618 Chlamydophila caviae GPIC protein kinase NP_829482.1 708041 R 227941 CDS NP_829483.1 29840377 1218304 complement(710150..710515) 1 NC_003361.3 similar to GB:D38405, PID:551625, SP:Q59536, GB:D38405, PID:551625, and SP:Q59536; identified by sequence similarity; hypothetical protein 710515 1218304 CCA00619 Chlamydophila caviae GPIC hypothetical protein NP_829483.1 710150 R 227941 CDS NP_829484.1 29840378 1218305 complement(710789..711157) 1 NC_003361.3 similar to GB:D38405, PID:551625, and SP:Q59536; identified by sequence similarity; hypothetical protein 711157 1218305 CCA00620 Chlamydophila caviae GPIC hypothetical protein NP_829484.1 710789 R 227941 CDS NP_829485.1 29840379 1218306 complement(711509..711835) 1 NC_003361.3 similar to GB:D38405, PID:551625, SP:Q59536, GB:D38405, PID:551625, and SP:Q59536; identified by sequence similarity; hypothetical protein 711835 1218306 CCA00621 Chlamydophila caviae GPIC hypothetical protein NP_829485.1 711509 R 227941 CDS NP_829486.1 29840380 1218307 complement(711925..712356) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03334; hypothetical protein 712356 1218307 CCA00622 Chlamydophila caviae GPIC hypothetical protein NP_829486.1 711925 R 227941 CDS NP_829487.1 29840381 1218308 complement(712436..713944) 1 NC_003361.3 similar to GB:D38405, PID:551625, and SP:Q59536; identified by sequence similarity; hypothetical protein 713944 1218308 CCA00623 Chlamydophila caviae GPIC hypothetical protein NP_829487.1 712436 R 227941 CDS NP_829488.1 29840382 1218309 714234..716759 1 NC_003361.3 similar to GB:L09228, SP:P17616, GB:X51510, PID:40084, PID:410123, and GB:AL009126; identified by sequence similarity; hypothetical protein 716759 1218309 CCA00624 Chlamydophila caviae GPIC hypothetical protein NP_829488.1 714234 D 227941 CDS NP_829489.1 29840383 1218310 complement(716895..719489) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02381; ATP-dependent Clp protease, subunit B 719489 clpB 1218310 clpB Chlamydophila caviae GPIC ATP-dependent Clp protease, subunit B NP_829489.1 716895 R 227941 CDS NP_829490.1 29840384 1218311 complement(719541..720341) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02470; ABC transporter periplasmic substrate-binding protein 720341 1218311 CCA00626 Chlamydophila caviae GPIC ABC transporter periplasmic substrate-binding protein NP_829490.1 719541 R 227941 CDS NP_829491.1 29840385 1218312 complement(720371..721117) 1 NC_003361.3 similar to GB:Z12296, and PID:43338; identified by sequence similarity; ABC transporter ATP-binding protein 721117 1218312 CCA00627 Chlamydophila caviae GPIC ABC transporter ATP-binding protein NP_829491.1 720371 R 227941 CDS NP_829492.1 29840386 1218313 complement(721126..721917) 1 NC_003361.3 similar to GB:Z12296, PID:43338, GB:Z12296, and PID:43338; identified by sequence similarity; ABC transporter permease 721917 1218313 CCA00628 Chlamydophila caviae GPIC ABC transporter permease NP_829492.1 721126 R 227941 CDS NP_829493.1 29840387 1218314 complement(721948..723261) 1 NC_003361.3 catalyzes the formation of 5-aminolevulinate from (S)-4-amino-5-oxopentanoate; glutamate-1-semialdehyde aminotransferase 723261 hemL 1218314 hemL Chlamydophila caviae GPIC glutamate-1-semialdehyde aminotransferase NP_829493.1 721948 R 227941 CDS NP_829494.1 29840388 1218315 complement(723353..723922) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02622; hypothetical protein 723922 1218315 CCA00630 Chlamydophila caviae GPIC hypothetical protein NP_829494.1 723353 R 227941 CDS NP_829495.1 29840389 1218316 complement(723939..724379) 1 NC_003361.3 similar to GB:M99391, and PID:152478; identified by sequence similarity; hypothetical protein 724379 1218316 CCA00631 Chlamydophila caviae GPIC hypothetical protein NP_829495.1 723939 R 227941 CDS NP_829496.1 29840390 1218317 complement(724376..725077) 1 NC_003361.3 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 725077 rpiA 1218317 rpiA Chlamydophila caviae GPIC ribose-5-phosphate isomerase A NP_829496.1 724376 R 227941 CDS NP_829497.1 29840391 1218318 complement(725268..726362) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03334; hypothetical protein 726362 1218318 CCA00633 Chlamydophila caviae GPIC hypothetical protein NP_829497.1 725268 R 227941 CDS NP_829498.1 29840392 1218319 complement(726526..727776) 1 NC_003361.3 hypothetical protein 727776 1218319 CCA00634 Chlamydophila caviae GPIC hypothetical protein NP_829498.1 726526 R 227941 CDS NP_829499.1 29840393 1218320 727793..727885 1 NC_003361.3 hypothetical protein 727885 1218320 CCA00635 Chlamydophila caviae GPIC hypothetical protein NP_829499.1 727793 D 227941 CDS NP_829500.1 29840394 1218321 complement(727991..729226) 1 NC_003361.3 similar to GP:7189329; identified by sequence similarity; hypothetical protein 729226 1218321 CCA00636 Chlamydophila caviae GPIC hypothetical protein NP_829500.1 727991 R 227941 CDS NP_829501.1 29840395 1218322 complement(729329..729451) 1 NC_003361.3 hypothetical protein 729451 1218322 CCA00637 Chlamydophila caviae GPIC hypothetical protein NP_829501.1 729329 R 227941 CDS NP_829502.1 29840396 1218323 complement(729643..729924) 1 NC_003361.3 hypothetical protein 729924 1218323 CCA00638 Chlamydophila caviae GPIC hypothetical protein NP_829502.1 729643 R 227941 CDS NP_829503.1 29840397 1218324 complement(730349..732019) 1 NC_003361.3 similar to GB:L17309, SP:P39064, PID:348049, PID:2293223, GB:AL009126, GB:L17309, SP:P39064, PID:348049, PID:2293223, and GB:AL009126; identified by sequence similarity; hypothetical protein 732019 1218324 CCA00639 Chlamydophila caviae GPIC hypothetical protein NP_829503.1 730349 R 227941 CDS NP_829504.1 29840398 1218325 732383..733138 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR00486; hypothetical protein 733138 1218325 CCA00640 Chlamydophila caviae GPIC hypothetical protein NP_829504.1 732383 D 227941 CDS NP_829505.1 29840399 1218326 733232..735061 1 NC_003361.3 identified by match to PFAM protein family HMM PF04063; oligoendopeptidase F 735061 pepF 1218326 pepF Chlamydophila caviae GPIC oligoendopeptidase F NP_829505.1 733232 D 227941 CDS NP_829506.1 29840400 1218327 735193..735501 1 NC_003361.3 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 735501 groES 1218327 groES Chlamydophila caviae GPIC co-chaperonin GroES NP_829506.1 735193 D 227941 CDS NP_829507.1 29840401 1218328 735552..737186 1 NC_003361.3 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 737186 groEL 1218328 groEL Chlamydophila caviae GPIC molecular chaperone GroEL NP_829507.1 735552 D 227941 CDS NP_829508.1 29840402 1218329 737328..738131 1 NC_003361.3 similar to GB:U11013, PID:506777, and SP:P50927; identified by sequence similarity; hypothetical protein 738131 1218329 CCA00644 Chlamydophila caviae GPIC hypothetical protein NP_829508.1 737328 D 227941 CDS NP_829509.1 29840403 1218330 738381..738779 1 NC_003361.3 identified by match to PFAM protein family HMM PF03083; hypothetical protein 738779 1218330 CCA00645 Chlamydophila caviae GPIC hypothetical protein NP_829509.1 738381 D 227941 CDS NP_829510.1 29840404 1218331 complement(738595..738714) 1 NC_003361.3 hypothetical protein 738714 1218331 CCA00646 Chlamydophila caviae GPIC hypothetical protein NP_829510.1 738595 R 227941 CDS NP_829511.1 29840405 1218332 738878..739687 1 NC_003361.3 similar to GP:8978503; identified by sequence similarity; hypothetical protein 739687 1218332 CCA00647 Chlamydophila caviae GPIC hypothetical protein NP_829511.1 738878 D 227941 CDS NP_829512.1 29840406 1218333 complement(739842..740615) 1 NC_003361.3 biotin apo-protein ligase-like protein 740615 1218333 CCA00648 Chlamydophila caviae GPIC biotin apo-protein ligase-like protein NP_829512.1 739842 R 227941 CDS NP_829513.1 29840407 1218334 740749..741765 1 NC_003361.3 similar to GB:L34167, PID:508600, GB:L34167, and PID:508600; identified by sequence similarity; hypothetical protein 741765 1218334 CCA00649 Chlamydophila caviae GPIC hypothetical protein NP_829513.1 740749 D 227941 CDS NP_829514.1 29840408 1218335 742283..744490 1 NC_003361.3 similar to GB:U11017, PID:506782, and SP:P50929; identified by sequence similarity; recombinase D 744490 1218335 CCA00650 Chlamydophila caviae GPIC recombinase D NP_829514.1 742283 D 227941 CDS NP_829515.1 29840409 1218336 complement(744504..746156) 1 NC_003361.3 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 746156 metG 1218336 metG Chlamydophila caviae GPIC methionyl-tRNA synthetase NP_829515.1 744504 R 227941 CDS NP_829516.1 29840410 1218337 complement(746156..746452) 1 NC_003361.3 similar to GB:U11017, PID:506782, and SP:P50929; identified by sequence similarity; hypothetical protein 746452 1218337 CCA00652 Chlamydophila caviae GPIC hypothetical protein NP_829516.1 746156 R 227941 CDS NP_829517.1 29840411 1218338 complement(746449..747063) 1 NC_003361.3 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 747063 gmk 1218338 gmk Chlamydophila caviae GPIC guanylate kinase NP_829517.1 746449 R 227941 CDS NP_829518.1 29840412 1218339 complement(747070..747708) 1 NC_003361.3 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 747708 rnhB 1218339 rnhB Chlamydophila caviae GPIC ribonuclease HII NP_829518.1 747070 R 227941 CDS NP_829519.1 29840413 1218340 complement(747766..748131) 1 NC_003361.3 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 748131 rplS 1218340 rplS Chlamydophila caviae GPIC 50S ribosomal protein L19 NP_829519.1 747766 R 227941 CDS NP_829520.1 29840414 1218341 complement(748155..749222) 1 NC_003361.3 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; Chlamydial proteins show a C-terminal extension of unknown function; tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein 749222 trmD 1218341 trmD Chlamydophila caviae GPIC tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein NP_829520.1 748155 R 227941 CDS NP_829521.1 29840415 1218342 complement(749237..749596) 1 NC_003361.3 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 749596 rpsP 1218342 rpsP Chlamydophila caviae GPIC 30S ribosomal protein S16 NP_829521.1 749237 R 227941 CDS NP_829522.1 29840416 1218343 complement(749587..750930) 1 NC_003361.3 similar to GB:U11020, PID:506786, and SP:P50931; identified by sequence similarity; signal recognition particle protein 750930 ffh 1218343 ffh Chlamydophila caviae GPIC signal recognition particle protein NP_829522.1 749587 R 227941 CDS NP_829523.1 29840417 1218344 complement(750957..751808) 1 NC_003361.3 HemK; PrmC; transfers a methyl group from S-adenosyl-methionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB possibly stimulating release of completed polypeptide chains; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 751808 hemK 1218344 hemK Chlamydophila caviae GPIC N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase NP_829523.1 750957 R 227941 CDS NP_829524.1 29840418 1218345 complement(751786..752871) 1 NC_003361.3 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 752871 prfA 1218345 prfA Chlamydophila caviae GPIC peptide chain release factor 1 NP_829524.1 751786 R 227941 CDS NP_829525.1 29840419 1218346 complement(753293..753619) 1 NC_003361.3 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 753619 rpmE2 1218346 rpmE2 Chlamydophila caviae GPIC 50S ribosomal protein L31 NP_829525.1 753293 R 227941 CDS NP_829526.1 29840420 1218347 753703..754452 1 NC_003361.3 hypothetical protein 754452 1218347 CCA00662 Chlamydophila caviae GPIC hypothetical protein NP_829526.1 753703 D 227941 CDS NP_829527.1 29840421 1218348 754762..756651 1 NC_003361.3 similar to SP:P07024, GB:X03895, PID:1773162, and PID:1786687; identified by sequence similarity; signal peptidase I 756651 1218348 CCA00663 Chlamydophila caviae GPIC signal peptidase I NP_829527.1 754762 D 227941 CDS NP_829528.1 29840422 1218349 complement(756707..759838) 1 NC_003361.3 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 759838 ileS 1218349 ileS Chlamydophila caviae GPIC isoleucyl-tRNA synthetase NP_829528.1 756707 R 227941 CDS NP_829529.1 29840423 1218350 760599..761096 1 NC_003361.3 similar to GB:L04979, SP:P28307, PID:290425, PID:1147564, GB:U00096, PID:1651511, PID:1651514, and PID:1787279; identified by sequence similarity; hypothetical protein 761096 1218350 CCA00665 Chlamydophila caviae GPIC hypothetical protein NP_829529.1 760599 D 227941 CDS NP_829530.1 29840424 1218351 complement(761100..762392) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02562; phoH family protein 762392 1218351 CCA00666 Chlamydophila caviae GPIC phoH family protein NP_829530.1 761100 R 227941 CDS NP_829531.1 29840425 1218352 762619..763440 1 NC_003361.3 hypothetical protein 763440 1218352 CCA00667 Chlamydophila caviae GPIC hypothetical protein NP_829531.1 762619 D 227941 CDS NP_829532.1 29840426 1218353 763587..764816 1 NC_003361.3 similar to GB:L04979, SP:P28307, PID:290425, PID:1147564, GB:U00096, PID:1651511, PID:1651514, and PID:1787279; identified by sequence similarity; hypothetical protein 764816 1218353 CCA00668 Chlamydophila caviae GPIC hypothetical protein NP_829532.1 763587 D 227941 CDS NP_829533.1 29840427 1218354 complement(765130..766191) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02652; cytochrome d oxidase, subunit II 766191 cydB 1218354 cydB Chlamydophila caviae GPIC cytochrome d oxidase, subunit II NP_829533.1 765130 R 227941 CDS NP_829534.1 29840428 1218355 complement(766194..767534) 1 NC_003361.3 similar to GB:L04979, SP:P28307, PID:290425, PID:1147564, GB:U00096, PID:1651511, PID:1651514, and PID:1787279; identified by sequence similarity; cytochrome d oxidase subunit I 767534 cydA 1218355 cydA Chlamydophila caviae GPIC cytochrome d oxidase subunit I NP_829534.1 766194 R 227941 CDS NP_829535.1 29840429 1218356 767734..768528 1 NC_003361.3 identified by match to PFAM protein family HMM PF02457; hypothetical protein 768528 1218356 CCA00671 Chlamydophila caviae GPIC hypothetical protein NP_829535.1 767734 D 227941 CDS NP_829536.1 29840430 1218357 768510..769793 1 NC_003361.3 similar to GP:7189588; identified by sequence similarity; hypothetical protein 769793 1218357 CCA00672 Chlamydophila caviae GPIC hypothetical protein NP_829536.1 768510 D 227941 CDS NP_829537.1 29840431 1218358 769998..771344 1 NC_003361.3 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 771344 1218358 CCA00673 Chlamydophila caviae GPIC lipid A biosynthesis lauroyl acyltransferase NP_829537.1 769998 D 227941 CDS NP_829538.1 29840432 1218359 771398..771727 1 NC_003361.3 hypothetical protein 771727 1218359 CCA00674 Chlamydophila caviae GPIC hypothetical protein NP_829538.1 771398 D 227941 CDS NP_829539.1 29840433 1218360 complement(771744..773189) 1 NC_003361.3 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 773189 pyk 1218360 pyk Chlamydophila caviae GPIC pyruvate kinase NP_829539.1 771744 R 227941 CDS NP_829540.1 29840434 1218361 773526..778946 1 NC_003361.3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 778946 uvrA 1218361 uvrA Chlamydophila caviae GPIC excinuclease ABC subunit A NP_829540.1 773526 D 227941 CDS NP_829541.1 29840435 1218362 complement(778941..781733) 1 NC_003361.3 PknD; responsible for phosphorylation of proteins on serine and threonine residues; similar to eukaryotic Ser/Thr kinases; in Chlamydia trachomatis itseems to interact with Pkn1, another serine/threonine-protein kinase; serine/threonine-protein kinase 781733 pknD 1218362 pknD Chlamydophila caviae GPIC serine/threonine-protein kinase NP_829541.1 778941 R 227941 CDS NP_829542.1 29840436 1218363 complement(781754..784576) 1 NC_003361.3 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 784576 valS 1218363 valS Chlamydophila caviae GPIC valyl-tRNA synthetase NP_829542.1 781754 R 227941 CDS NP_829543.1 29840437 1218364 complement(784635..785123) 1 NC_003361.3 hypothetical protein 785123 1218364 CCA00679 Chlamydophila caviae GPIC hypothetical protein NP_829543.1 784635 R 227941 CDS NP_829544.1 29840438 1218365 complement(785074..785499) 1 NC_003361.3 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 785499 atpK 1218365 atpK Chlamydophila caviae GPIC V-type ATP synthase subunit K NP_829544.1 785074 R 227941 CDS NP_829545.1 29840439 1218366 complement(785630..787585) 1 NC_003361.3 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 787585 atpI 1218366 atpI Chlamydophila caviae GPIC V-type ATP synthase subunit I NP_829545.1 785630 R 227941 CDS NP_829546.1 29840440 1218367 complement(787576..788202) 1 NC_003361.3 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 788202 1218367 CCA00682 Chlamydophila caviae GPIC V-type ATP synthase subunit D NP_829546.1 787576 R 227941 CDS NP_829547.1 29840441 1218368 complement(788187..789503) 1 NC_003361.3 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 789503 atpB 1218368 atpB Chlamydophila caviae GPIC V-type ATP synthase subunit B NP_829547.1 788187 R 227941 CDS NP_829548.1 29840442 1218369 complement(789508..791283) 1 NC_003361.3 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 791283 atpA 1218369 atpA Chlamydophila caviae GPIC V-type ATP synthase subunit A NP_829548.1 789508 R 227941 CDS NP_829549.1 29840443 1218370 complement(791277..792077) 1 NC_003361.3 similar to GP:7190621; identified by sequence similarity; hypothetical protein 792077 1218370 CCA00685 Chlamydophila caviae GPIC hypothetical protein NP_829549.1 791277 R 227941 CDS NP_829550.1 29840444 1218371 complement(792125..792751) 1 NC_003361.3 produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit E 792751 1218371 CCA00686 Chlamydophila caviae GPIC V-type ATP synthase subunit E NP_829550.1 792125 R 227941 CDS NP_829551.1 29840445 1218372 792868..793626 1 NC_003361.3 similar to GB:Z35107, and PID:510938; identified by sequence similarity; hypothetical protein 793626 1218372 CCA00687 Chlamydophila caviae GPIC hypothetical protein NP_829551.1 792868 D 227941 CDS NP_829552.1 29840446 1218373 complement(793639..794049) 1 NC_003361.3 similar to GB:Z35107, PID:510938, GB:Z35107, and PID:510938; identified by sequence similarity; hypothetical protein 794049 1218373 CCA00688 Chlamydophila caviae GPIC hypothetical protein NP_829552.1 793639 R 227941 CDS NP_829553.1 29840447 1218374 complement(794071..795054) 1 NC_003361.3 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 795054 tal 1218374 tal Chlamydophila caviae GPIC transaldolase B NP_829553.1 794071 R 227941 CDS NP_829554.1 29840448 1218375 complement(795174..799355) 1 NC_003361.3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 799355 rpoC 1218375 rpoC Chlamydophila caviae GPIC DNA-directed RNA polymerase subunit beta' NP_829554.1 795174 R 227941 CDS NP_829555.1 29840449 1218376 complement(799383..803141) 1 NC_003361.3 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 803141 rpoB 1218376 rpoB Chlamydophila caviae GPIC DNA-directed RNA polymerase subunit beta NP_829555.1 799383 R 227941 CDS NP_829556.1 29840450 1218377 complement(803279..803671) 1 NC_003361.3 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 803671 rplL 1218377 rplL Chlamydophila caviae GPIC 50S ribosomal protein L7/L12 NP_829556.1 803279 R 227941 CDS NP_829557.1 29840451 1218378 complement(803713..804225) 1 NC_003361.3 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 804225 rplJ 1218378 rplJ Chlamydophila caviae GPIC 50S ribosomal protein L10 NP_829557.1 803713 R 227941 CDS NP_829558.1 29840452 1218379 complement(804239..804937) 1 NC_003361.3 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 804937 rplA 1218379 rplA Chlamydophila caviae GPIC 50S ribosomal protein L1 NP_829558.1 804239 R 227941 CDS NP_829559.1 29840453 1218380 complement(804960..805385) 1 NC_003361.3 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 805385 rplK 1218380 rplK Chlamydophila caviae GPIC 50S ribosomal protein L11 NP_829559.1 804960 R 227941 CDS NP_829560.1 29840454 1218381 complement(805492..806040) 1 NC_003361.3 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 806040 nusG 1218381 nusG Chlamydophila caviae GPIC transcription antitermination protein NusG NP_829560.1 805492 R 227941 CDS NP_829561.1 29840455 1218382 complement(806045..806290) 1 NC_003361.3 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 806290 secE 1218382 secE Chlamydophila caviae GPIC preprotein translocase subunit SecE NP_829561.1 806045 R 227941 CDS NP_829562.1 29840456 1218383 complement(806451..807635) 1 NC_003361.3 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 807635 tuf 1218383 tuf Chlamydophila caviae GPIC elongation factor Tu NP_829562.1 806451 R 227941 CDS NP_829563.1 29840457 1218384 complement(807828..808049) 1 NC_003361.3 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 808049 infA 1218384 infA Chlamydophila caviae GPIC translation initiation factor IF-1 NP_829563.1 807828 R 227941 CDS NP_829564.1 29840458 1218385 808350..809336 1 NC_003361.3 identified by match to PFAM protein family HMM PF02517; hypothetical protein 809336 1218385 CCA00700 Chlamydophila caviae GPIC hypothetical protein NP_829564.1 808350 D 227941 CDS NP_829565.1 29840459 1218386 809339..809788 1 NC_003361.3 similar to GP:7189619; identified by sequence similarity; hypothetical protein 809788 1218386 CCA00701 Chlamydophila caviae GPIC hypothetical protein NP_829565.1 809339 D 227941 CDS NP_829566.1 29840460 1218387 810214..811950 1 NC_003361.3 similar to GP:1236759; identified by sequence similarity; hypothetical protein 811950 1218387 CCA00702 Chlamydophila caviae GPIC hypothetical protein NP_829566.1 810214 D 227941 CDS NP_829567.1 29840461 1218388 complement(812129..812350) 1 NC_003361.3 hypothetical protein 812350 1218388 CCA00703 Chlamydophila caviae GPIC hypothetical protein NP_829567.1 812129 R 227941 CDS NP_829568.1 29840462 1218389 complement(812397..812576) 1 NC_003361.3 hypothetical protein 812576 1218389 CCA00704 Chlamydophila caviae GPIC hypothetical protein NP_829568.1 812397 R 227941 CDS NP_829569.1 29840463 1218390 812747..812896 1 NC_003361.3 hypothetical protein 812896 1218390 CCA00705 Chlamydophila caviae GPIC hypothetical protein NP_829569.1 812747 D 227941 CDS NP_829570.1 29840464 1218391 complement(812882..813481) 1 NC_003361.3 similar to GB:L19895, SP:P43877, PID:469174, GB:L19895, SP:P43877, and PID:469174; identified by sequence similarity; hypothetical protein 813481 1218391 CCA00706 Chlamydophila caviae GPIC hypothetical protein NP_829570.1 812882 R 227941 CDS NP_829571.1 29840465 1218392 813864..815729 1 NC_003361.3 identified by match to PFAM protein family HMM PF02984; hypothetical protein 815729 1218392 CCA00707 Chlamydophila caviae GPIC hypothetical protein NP_829571.1 813864 D 227941 CDS NP_829572.1 29840466 1218393 complement(815883..816233) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03025; hypothetical protein 816233 1218393 CCA00708 Chlamydophila caviae GPIC hypothetical protein NP_829572.1 815883 R 227941 CDS NP_829573.1 29840467 1218394 complement(816306..817976) 1 NC_003361.3 similar to GB:X73124, SP:P39577, PID:413925, GB:AL009126, GB:X73124, SP:P39577, PID:413925, and GB:AL009126; identified by sequence similarity; hypothetical protein 817976 1218394 CCA00709 Chlamydophila caviae GPIC hypothetical protein NP_829573.1 816306 R 227941 CDS NP_829574.1 29840468 1218395 complement(818318..818848) 1 NC_003361.3 similar to GB:L25276, SP:P35641, PID:408488, GB:L25276, SP:P35641, and PID:408488; identified by sequence similarity; hypothetical protein 818848 1218395 CCA00710 Chlamydophila caviae GPIC hypothetical protein NP_829574.1 818318 R 227941 CDS NP_829575.1 29840469 1218396 complement(819152..819466) 1 NC_003361.3 hypothetical protein 819466 1218396 CCA00711 Chlamydophila caviae GPIC hypothetical protein NP_829575.1 819152 R 227941 CDS NP_829576.1 29840470 1218397 complement(819598..820467) 1 NC_003361.3 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 820467 dapA 1218397 dapA Chlamydophila caviae GPIC dihydrodipicolinate synthase NP_829576.1 819598 R 227941 CDS NP_829577.1 29840471 1218398 complement(820478..821800) 1 NC_003361.3 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 821800 lysC 1218398 lysC Chlamydophila caviae GPIC aspartate kinase NP_829577.1 820478 R 227941 CDS NP_829578.1 29840472 1218399 complement(821788..822792) 1 NC_003361.3 catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase 822792 asd 1218399 asd Chlamydophila caviae GPIC aspartate-semialdehyde dehydrogenase NP_829578.1 821788 R 227941 CDS NP_829579.1 29840473 1218400 complement(822978..823718) 1 NC_003361.3 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 823718 dapB 1218400 dapB Chlamydophila caviae GPIC dihydrodipicolinate reductase NP_829579.1 822978 R 227941 CDS NP_829580.1 29840474 1218401 823928..824761 1 NC_003361.3 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 824761 phhA 1218401 phhA Chlamydophila caviae GPIC phenylalanine 4-monooxygenase NP_829580.1 823928 D 227941 CDS NP_829581.1 29840475 1218402 824742..825413 1 NC_003361.3 identified by match to PFAM protein family HMM PF02592; hypothetical protein 825413 1218402 CCA00717 Chlamydophila caviae GPIC hypothetical protein NP_829581.1 824742 D 227941 CDS NP_829582.1 29840476 1218403 825501..826580 1 NC_003361.3 similar to GP:7190297, and GP:7190297; identified by sequence similarity; hypothetical protein 826580 1218403 CCA00718 Chlamydophila caviae GPIC hypothetical protein NP_829582.1 825501 D 227941 CDS NP_829583.1 29840477 1218404 826588..827436 1 NC_003361.3 similar to GP:6117874; identified by sequence similarity; short chain dehydrogenase 827436 1218404 CCA00719 Chlamydophila caviae GPIC short chain dehydrogenase NP_829583.1 826588 D 227941 CDS NP_829584.1 29840478 1218406 complement(827692..828081) 1 NC_003361.3 A segment of this protein has high similarity to a Chlamydia phage protein.; similar to GP:7406593, and GP:7406593; identified by sequence similarity; hypothetical protein 828081 1218406 CCA00721 Chlamydophila caviae GPIC hypothetical protein NP_829584.1 827692 R 227941 CDS NP_829585.1 29840479 1218407 complement(828196..828549) 1 NC_003361.3 This protein contains two segments highly homologous to Chlamydia phage proteins.; similar to GP:7406595, GP:7406595, and GP:7406589; identified by sequence similarity; hypothetical protein 828549 1218407 CCA00722 Chlamydophila caviae GPIC hypothetical protein NP_829585.1 828196 R 227941 CDS NP_829586.1 29840480 1218408 828613..829953 1 NC_003361.3 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 829953 aroA 1218408 aroA Chlamydophila caviae GPIC 3-phosphoshikimate 1-carboxyvinyltransferase NP_829586.1 828613 D 227941 CDS NP_829587.1 29840481 1218409 829889..830410 1 NC_003361.3 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 830410 aroK 1218409 aroK Chlamydophila caviae GPIC shikimate kinase NP_829587.1 829889 D 227941 CDS NP_829588.1 29840482 1218410 830407..831486 1 NC_003361.3 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 831486 aroC 1218410 aroC Chlamydophila caviae GPIC chorismate synthase NP_829588.1 830407 D 227941 CDS NP_829589.1 29840483 1218411 831483..832622 1 NC_003361.3 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 832622 aroB 1218411 aroB Chlamydophila caviae GPIC 3-dehydroquinate synthase NP_829589.1 831483 D 227941 CDS NP_829590.1 29840484 1218412 832603..834036 1 NC_003361.3 AroDE; bifunctional enzyme; can convert 3-dehydroquinate to 3-dehydroshkimate and then to shikimate; involved in the synthesis of aromatic amino acids and other metabolites; type I 3-DHQase; bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase 834036 aroDE 1218412 aroDE Chlamydophila caviae GPIC bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase NP_829590.1 832603 D 227941 CDS NP_829591.1 29840485 1218413 834088..834879 1 NC_003361.3 similar to GB:M17642, SP:P11469, PID:142968, and GB:AL009126; identified by sequence similarity; hypothetical protein 834879 1218413 CCA00728 Chlamydophila caviae GPIC hypothetical protein NP_829591.1 834088 D 227941 CDS NP_829592.1 29840486 1218414 834984..836339 1 NC_003361.3 identified by match to PFAM protein family HMM PF00089; hypothetical protein 836339 1218414 CCA00729 Chlamydophila caviae GPIC hypothetical protein NP_829592.1 834984 D 227941 CDS NP_829593.1 29840487 1218415 836367..836954 1 NC_003361.3 similar to GB:M99391, and PID:152478; identified by sequence similarity; hypothetical protein 836954 1218415 CCA00730 Chlamydophila caviae GPIC hypothetical protein NP_829593.1 836367 D 227941 CDS NP_829594.1 29840488 1218416 836964..838424 1 NC_003361.3 similar to GP:8163506; identified by sequence similarity; amino acid permease 838424 arcD 1218416 arcD Chlamydophila caviae GPIC amino acid permease NP_829594.1 836964 D 227941 CDS NP_829595.1 29840489 1218417 838589..839629 1 NC_003361.3 identified by match to PFAM protein family HMM PF01266; DadA family oxidoreductase 839629 1218417 CCA00732 Chlamydophila caviae GPIC DadA family oxidoreductase NP_829595.1 838589 D 227941 CDS NP_829596.1 29840490 1218418 complement(839619..840443) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02588; hypothetical protein 840443 1218418 CCA00733 Chlamydophila caviae GPIC hypothetical protein NP_829596.1 839619 R 227941 CDS NP_829597.1 29840491 1218419 complement(840466..841458) 1 NC_003361.3 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 841458 mdh 1218419 mdh Chlamydophila caviae GPIC malate dehydrogenase NP_829597.1 840466 R 227941 CDS NP_829598.1 29840492 1218420 complement(841810..841953) 1 NC_003361.3 similar to GB:U11013, PID:506777, and SP:P50927; identified by sequence similarity; hypothetical protein 841953 1218420 CCA00735 Chlamydophila caviae GPIC hypothetical protein NP_829598.1 841810 R 227941 CDS NP_829599.1 29840493 1218421 complement(842059..843642) 1 NC_003361.3 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 843642 pgi 1218421 pgi Chlamydophila caviae GPIC glucose-6-phosphate isomerase NP_829599.1 842059 R 227941 CDS NP_829600.1 29840494 1218422 843715..844611 1 NC_003361.3 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 844611 xerD 1218422 xerD Chlamydophila caviae GPIC site-specific tyrosine recombinase XerD NP_829600.1 843715 D 227941 CDS NP_829601.1 29840495 1218423 complement(844608..844895) 1 NC_003361.3 similar to GB:U11013, PID:506777, SP:P50927, GB:U11013, PID:506777, and SP:P50927; identified by sequence similarity; hypothetical protein 844895 1218423 CCA00738 Chlamydophila caviae GPIC hypothetical protein NP_829601.1 844608 R 227941 CDS NP_829602.1 29840496 1218424 845259..846701 1 NC_003361.3 similar to GB:U11013, PID:506777, and SP:P50927; identified by sequence similarity; hypothetical protein 846701 1218424 CCA00739 Chlamydophila caviae GPIC hypothetical protein NP_829602.1 845259 D 227941 CDS NP_829603.1 29840497 1218425 846701..847219 1 NC_003361.3 similar to GB:M74042, PID:454843, and SP:P50928; identified by sequence similarity; type III secretion chaperone 847219 1218425 CCA00740 Chlamydophila caviae GPIC type III secretion chaperone NP_829603.1 846701 D 227941 CDS NP_829604.1 29840498 1218426 847244..848758 1 NC_003361.3 similar to GB:M74042, PID:454843, and SP:P50928; identified by sequence similarity; hypothetical protein 848758 1218426 CCA00741 Chlamydophila caviae GPIC hypothetical protein NP_829604.1 847244 D 227941 CDS NP_829605.1 29840499 1218427 848778..850262 1 NC_003361.3 similar to GB:M74042, PID:454843, and SP:P50928; identified by sequence similarity; hypothetical protein 850262 1218427 CCA00742 Chlamydophila caviae GPIC hypothetical protein NP_829605.1 848778 D 227941 CDS NP_829606.1 29840500 1218428 complement(850270..850992) 1 NC_003361.3 similar to GB:M74042, PID:454843, SP:P50928, GB:M74042, PID:454843, and SP:P50928; identified by sequence similarity; hypothetical protein 850992 1218428 CCA00743 Chlamydophila caviae GPIC hypothetical protein NP_829606.1 850270 R 227941 CDS NP_829607.1 29840501 1218429 complement(850955..851884) 1 NC_003361.3 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 851884 ispH 1218429 ispH Chlamydophila caviae GPIC 4-hydroxy-3-methylbut-2-enyl diphosphate reductase NP_829607.1 850955 R 227941 CDS NP_829608.1 29840502 1218430 complement(851994..853775) 1 NC_003361.3 similar to GB:M74042, PID:454843, and SP:P50928; identified by sequence similarity; hypothetical protein 853775 1218430 CCA00745 Chlamydophila caviae GPIC hypothetical protein NP_829608.1 851994 R 227941 CDS NP_829609.1 29840503 1218431 complement(853890..855152) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02447; Na+/H+ antiporter 855152 1218431 CCA00746 Chlamydophila caviae GPIC Na+/H+ antiporter NP_829609.1 853890 R 227941 CDS NP_829610.1 29840504 1218432 855428..857128 1 NC_003361.3 similar to GB:U11017, PID:506782, and SP:P50929; identified by sequence similarity; sulfate transporter family protein 857128 1218432 CCA00747 Chlamydophila caviae GPIC sulfate transporter family protein NP_829610.1 855428 D 227941 CDS NP_829611.1 29840505 1218433 complement(857125..858507) 1 NC_003361.3 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 858507 fumC 1218433 fumC Chlamydophila caviae GPIC fumarate hydratase NP_829611.1 857125 R 227941 CDS NP_829612.1 29840506 1218434 858560..860392 1 NC_003361.3 similar to GB:U11017, PID:506782, and SP:P50929; identified by sequence similarity; ABC transporter permease 860392 1218434 CCA00749 Chlamydophila caviae GPIC ABC transporter permease NP_829612.1 858560 D 227941 CDS NP_829613.1 29840507 1218435 861051..861659 1 NC_003361.3 similar to GP:7190282; identified by sequence similarity; hypothetical protein 861659 1218435 CCA00750 Chlamydophila caviae GPIC hypothetical protein NP_829613.1 861051 D 227941 CDS NP_829614.1 29840508 1218436 861672..862280 1 NC_003361.3 similar to GB:U11020, PID:506786, SP:P50931, GB:U11020, PID:506786, and SP:P50931; identified by sequence similarity; hypothetical protein 862280 1218436 CCA00751 Chlamydophila caviae GPIC hypothetical protein NP_829614.1 861672 D 227941 CDS NP_829615.1 29840509 1218437 862290..863165 1 NC_003361.3 catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase 863165 map 1218437 map Chlamydophila caviae GPIC methionine aminopeptidase NP_829615.1 862290 D 227941 CDS NP_829616.1 29840510 1218438 complement(863122..864399) 1 NC_003361.3 similar to GB:U11020, PID:506786, and SP:P50931; identified by sequence similarity; hypothetical protein 864399 1218438 CCA00753 Chlamydophila caviae GPIC hypothetical protein NP_829616.1 863122 R 227941 CDS NP_829617.1 29840511 1218439 complement(864412..864597) 1 NC_003361.3 similar to GB:U11020, PID:506786, and SP:P50931; identified by sequence similarity; hypothetical protein 864597 1218439 CCA00754 Chlamydophila caviae GPIC hypothetical protein NP_829617.1 864412 R 227941 CDS NP_829618.1 29840512 1218440 864851..865354 1 NC_003361.3 similar to SP:P07024, GB:X03895, PID:1773162, and PID:1786687; identified by sequence similarity; hypothetical protein 865354 1218440 CCA00755 Chlamydophila caviae GPIC hypothetical protein NP_829618.1 864851 D 227941 CDS NP_829619.1 29840513 1218441 865405..865923 1 NC_003361.3 hypothetical protein 865923 1218441 CCA00756 Chlamydophila caviae GPIC hypothetical protein NP_829619.1 865405 D 227941 CDS NP_829620.1 29840514 1218442 865943..866473 1 NC_003361.3 similar to SP:P07024, GB:X03895, PID:1773162, and PID:1786687; identified by sequence similarity; hypothetical protein 866473 1218442 CCA00757 Chlamydophila caviae GPIC hypothetical protein NP_829620.1 865943 D 227941 CDS NP_829621.1 29840515 1218443 866557..867264 1 NC_003361.3 similar to SP:P07024, GB:X03895, PID:1773162, and PID:1786687; identified by sequence similarity; hypothetical protein 867264 1218443 CCA00758 Chlamydophila caviae GPIC hypothetical protein NP_829621.1 866557 D 227941 CDS NP_829622.1 29840516 1218444 complement(867261..867491) 1 NC_003361.3 similar to GP:8979375; identified by sequence similarity; hypothetical protein 867491 1218444 CCA00759 Chlamydophila caviae GPIC hypothetical protein NP_829622.1 867261 R 227941 CDS NP_829623.1 29840517 1218445 complement(867481..867954) 1 NC_003361.3 identified by match to PFAM protein family HMM PF00383; cytidine/deoxycytidylate deaminase 867954 1218445 CCA00760 Chlamydophila caviae GPIC cytidine/deoxycytidylate deaminase NP_829623.1 867481 R 227941 CDS NP_829624.1 29840518 1218446 868198..868467 1 NC_003361.3 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 868467 rpsO 1218446 rpsO Chlamydophila caviae GPIC 30S ribosomal protein S15 NP_829624.1 868198 D 227941 CDS NP_829625.1 29840519 1218447 868515..870599 1 NC_003361.3 identified by match to PFAM protein family HMM PF02548; polynucleotide phosphorylase 870599 pnpA 1218447 pnpA Chlamydophila caviae GPIC polynucleotide phosphorylase NP_829625.1 868515 D 227941 CDS NP_829626.1 29840520 1218448 complement(870688..873429) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02642; cell division protein FtsH 873429 1218448 CCA00763 Chlamydophila caviae GPIC cell division protein FtsH NP_829626.1 870688 R 227941 CDS NP_829627.1 29840521 1218449 complement(873603..874556) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02629; MesJ/Ycf62 family protein 874556 1218449 CCA00764 Chlamydophila caviae GPIC MesJ/Ycf62 family protein NP_829627.1 873603 R 227941 CDS NP_829628.1 29840522 1218450 874671..875744 1 NC_003361.3 similar to SP:P13979, GB:X52553, SP:P15177, SP:P32885, and GB:J01769; identified by sequence similarity; hypothetical protein 875744 1218450 CCA00765 Chlamydophila caviae GPIC hypothetical protein NP_829628.1 874671 D 227941 CDS NP_829629.1 29840523 1218451 875748..876851 1 NC_003361.3 similar to SP:P13979, GB:X52553, SP:P15177, SP:P32885, and GB:J01769; identified by sequence similarity; hypothetical protein 876851 1218451 CCA00766 Chlamydophila caviae GPIC hypothetical protein NP_829629.1 875748 D 227941 CDS NP_829630.1 29840524 1218452 complement(876838..878865) 1 NC_003361.3 similar to SP:P13979, GB:X52553, SP:P15177, SP:P32885, and GB:J01769; identified by sequence similarity; hypothetical protein 878865 1218452 CCA00767 Chlamydophila caviae GPIC hypothetical protein NP_829630.1 876838 R 227941 CDS NP_829631.1 29840525 1218453 complement(879185..880210) 1 NC_003361.3 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 880210 pheS 1218453 pheS Chlamydophila caviae GPIC phenylalanyl-tRNA synthetase subunit alpha NP_829631.1 879185 R 227941 CDS NP_829632.1 29840526 1218454 complement(880223..880588) 1 NC_003361.3 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 880588 rplT 1218454 rplT Chlamydophila caviae GPIC 50S ribosomal protein L20 NP_829632.1 880223 R 227941 CDS NP_829633.1 29840527 1218455 complement(880607..880801) 1 NC_003361.3 identified by match to PFAM protein family HMM PF01632; 50S ribosomal protein L35 880801 rpmI 1218455 rpmI Chlamydophila caviae GPIC 50S ribosomal protein L35 NP_829633.1 880607 R 227941 CDS NP_829634.1 29840528 1218456 complement(880779..881339) 1 NC_003361.3 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 881339 infC 1218456 infC Chlamydophila caviae GPIC translation initiation factor IF-3 NP_829634.1 880779 R 227941 CDS NP_829635.1 29840529 1218457 881761..882258 1 NC_003361.3 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 882258 nusB 1218457 nusB Chlamydophila caviae GPIC transcription antitermination protein NusB NP_829635.1 881761 D 227941 CDS NP_829636.1 29840530 1218458 882290..883180 1 NC_003361.3 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 883180 murB 1218458 murB Chlamydophila caviae GPIC UDP-N-acetylenolpyruvoylglucosamine reductase NP_829636.1 882290 D 227941 CDS NP_829637.1 29840531 1218459 complement(883158..883754) 1 NC_003361.3 similar to GP:7190256; identified by sequence similarity; hypothetical protein 883754 1218459 CCA00774 Chlamydophila caviae GPIC hypothetical protein NP_829637.1 883158 R 227941 CDS NP_829638.1 29840532 1218460 complement(883869..884543) 1 NC_003361.3 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 884543 trmB 1218460 trmB Chlamydophila caviae GPIC tRNA (guanine-N(7)-)-methyltransferase NP_829638.1 883869 R 227941 CDS NP_829639.1 29840533 1218461 complement(884721..885761) 1 NC_003361.3 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 885761 nrdB 1218461 nrdB Chlamydophila caviae GPIC ribonucleotide-diphosphate reductase subunit beta NP_829639.1 884721 R 227941 CDS NP_829640.1 29840534 1218462 complement(885785..888919) 1 NC_003361.3 catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 888919 nrdA 1218462 nrdA Chlamydophila caviae GPIC ribonucleotide-diphosphate reductase subunit alpha NP_829640.1 885785 R 227941 CDS NP_829641.1 29840535 1218463 889295..890101 1 NC_003361.3 similar to GB:D14982, GB:Z33123, SP:P43044, PID:416242, and SP:P35879; identified by sequence similarity; glycerol-serine phosphatidyltransferase 890101 1218463 CCA00778 Chlamydophila caviae GPIC glycerol-serine phosphatidyltransferase NP_829641.1 889295 D 227941 CDS NP_829642.1 29840536 1218464 890098..891336 1 NC_003361.3 similar to GB:D14982, GB:Z33123, SP:P43044, PID:416242, GB:D14982, GB:Z33123, SP:P43044, and PID:416242; identified by sequence similarity; RmuC domain-containing protein 891336 1218464 CCA00779 Chlamydophila caviae GPIC RmuC domain-containing protein NP_829642.1 890098 D 227941 CDS NP_829643.1 29840537 1218465 complement(891341..894265) 1 NC_003361.3 similar to GB:D14982, GB:Z33123, SP:P43044, and PID:416242; identified by sequence similarity; insulinase metalloprotease 894265 1218465 CCA00780 Chlamydophila caviae GPIC insulinase metalloprotease NP_829643.1 891341 R 227941 CDS NP_829644.1 29840538 1218466 894414..895778 1 NC_003361.3 similar to GB:D14982, GB:Z33123, SP:P43044, and PID:416242; identified by sequence similarity; M20/M25/M40 family peptidase 895778 1218466 CCA00781 Chlamydophila caviae GPIC M20/M25/M40 family peptidase NP_829644.1 894414 D 227941 CDS NP_829645.1 29840539 1218467 complement(895834..897300) 1 NC_003361.3 similar to GB:D14982, GB:Z33123, SP:P43044, and PID:416242; identified by sequence similarity; serine protease 897300 htrA 1218467 htrA Chlamydophila caviae GPIC serine protease NP_829645.1 895834 R 227941 CDS NP_829646.1 29840540 1218468 complement(897636..898511) 1 NC_003361.3 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 898511 sucD 1218468 sucD Chlamydophila caviae GPIC succinyl-CoA synthetase subunit alpha NP_829646.1 897636 R 227941 CDS NP_829647.1 29840541 1218469 complement(898520..899686) 1 NC_003361.3 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 899686 sucC 1218469 sucC Chlamydophila caviae GPIC succinyl-CoA synthetase subunit beta NP_829647.1 898520 R 227941 CDS NP_829648.1 29840542 1218470 899757..900614 1 NC_003361.3 identified by match to PFAM protein family HMM PF02881; signal recognition particle-docking protein FtsY 900614 ftsY 1218470 ftsY Chlamydophila caviae GPIC signal recognition particle-docking protein FtsY NP_829648.1 899757 D 227941 CDS NP_829649.1 29840543 1218471 complement(900626..901342) 1 NC_003361.3 similar to GP:7190243, and GP:7190243; identified by sequence similarity; hypothetical protein 901342 1218471 CCA00786 Chlamydophila caviae GPIC hypothetical protein NP_829649.1 900626 R 227941 CDS NP_829650.1 29840544 1218472 complement(901398..902585) 1 NC_003361.3 similar to GB:M86713, SP:P31522, PID:155488, and PID:1322009; identified by sequence similarity; aromatic amino acid transport protein 902585 1218472 CCA00787 Chlamydophila caviae GPIC aromatic amino acid transport protein NP_829650.1 901398 R 227941 CDS NP_829651.1 29840545 1218473 complement(902654..904483) 1 NC_003361.3 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 904483 glmS 1218473 glmS Chlamydophila caviae GPIC glucosamine--fructose-6-phosphate aminotransferase NP_829651.1 902654 R 227941 CDS NP_829652.1 29840546 1218474 complement(904491..905867) 1 NC_003361.3 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 905867 glmM 1218474 glmM Chlamydophila caviae GPIC phosphoglucosamine mutase NP_829652.1 904491 R 227941 CDS NP_829653.1 29840547 1218475 complement(906307..906477) 1 NC_003361.3 hypothetical protein 906477 1218475 CCA00790 Chlamydophila caviae GPIC hypothetical protein NP_829653.1 906307 R 227941 CDS NP_829654.1 29840548 1218476 906507..907793 1 NC_003361.3 similar to GB:X69464, PID:398210, and PID:398211; identified by sequence similarity; poly(A) polymerase 907793 1218476 CCA00791 Chlamydophila caviae GPIC poly(A) polymerase NP_829654.1 906507 D 227941 CDS NP_829655.1 29840549 1218477 907807..909687 1 NC_003361.3 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate; lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 909687 lpxB 1218477 lpxB Chlamydophila caviae GPIC lipid-A-disaccharide synthase NP_829655.1 907807 D 227941 CDS NP_829656.1 29840550 1218478 complement(909998..910756) 1 NC_003361.3 similar to GP:6382503; identified by sequence similarity; hypothetical protein 910756 1218478 CCA00793 Chlamydophila caviae GPIC hypothetical protein NP_829656.1 909998 R 227941 CDS NP_829657.1 29840551 1218479 complement(910784..911905) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02646; hypothetical protein 911905 1218479 CCA00794 Chlamydophila caviae GPIC hypothetical protein NP_829657.1 910784 R 227941 CDS NP_829658.1 29840552 1218480 complement(912085..912816) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03597; hypothetical protein 912816 1218480 CCA00795 Chlamydophila caviae GPIC hypothetical protein NP_829658.1 912085 R 227941 CDS NP_829659.1 29840553 1218481 complement(912990..913085) 1 NC_003361.3 hypothetical protein 913085 1218481 CCA00796 Chlamydophila caviae GPIC hypothetical protein NP_829659.1 912990 R 227941 CDS NP_829660.1 29840554 1218482 complement(913288..914112) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02470; hypothetical protein 914112 1218482 CCA00797 Chlamydophila caviae GPIC hypothetical protein NP_829660.1 913288 R 227941 CDS NP_829661.1 29840555 1218483 complement(914207..914302) 1 NC_003361.3 hypothetical protein 914302 1218483 CCA00798 Chlamydophila caviae GPIC hypothetical protein NP_829661.1 914207 R 227941 CDS NP_829662.1 29840556 1218484 complement(914459..917077) 1 NC_003361.3 similar to GP:6899664; identified by sequence similarity; hypothetical protein 917077 1218484 CCA00799 Chlamydophila caviae GPIC hypothetical protein NP_829662.1 914459 R 227941 CDS NP_829663.1 29840557 1218485 complement(917262..918329) 1 NC_003361.3 similar to GP:2246532; identified by sequence similarity; hypothetical protein 918329 1218485 CCA00800 Chlamydophila caviae GPIC hypothetical protein NP_829663.1 917262 R 227941 CDS NP_829664.1 29840558 1218486 complement(918601..919587) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02912; hypothetical protein 919587 1218486 CCA00801 Chlamydophila caviae GPIC hypothetical protein NP_829664.1 918601 R 227941 CDS NP_829665.1 29840559 1218487 919810..919920 1 NC_003361.3 hypothetical protein 919920 1218487 CCA00802 Chlamydophila caviae GPIC hypothetical protein NP_829665.1 919810 D 227941 CDS NP_829666.1 29840560 1218488 920130..921410 1 NC_003361.3 similar to GB:X69464, PID:398210, PID:398211, GB:X69464, PID:398210, and PID:398211; identified by sequence similarity; hypothetical protein 921410 1218488 CCA00803 Chlamydophila caviae GPIC hypothetical protein NP_829666.1 920130 D 227941 CDS NP_829667.1 29840561 1218489 921608..924373 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR01609; hypothetical protein 924373 1218489 CCA00804 Chlamydophila caviae GPIC hypothetical protein NP_829667.1 921608 D 227941 CDS NP_829668.1 29840562 1218490 924751..926055 1 NC_003361.3 similar to GB:X69464, PID:398210, PID:398211, GB:X69464, PID:398210, and PID:398211; identified by sequence similarity; hypothetical protein 926055 1218490 CCA00805 Chlamydophila caviae GPIC hypothetical protein NP_829668.1 924751 D 227941 CDS NP_829669.1 29840563 1218491 complement(926134..930747) 1 NC_003361.3 similar to GP:6172401; identified by sequence similarity; hypothetical protein 930747 1218491 CCA00806 Chlamydophila caviae GPIC hypothetical protein NP_829669.1 926134 R 227941 CDS NP_829670.1 29840564 1218492 complement(930853..931803) 1 NC_003361.3 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 931803 plsX 1218492 plsX Chlamydophila caviae GPIC glycerol-3-phosphate acyltransferase PlsX NP_829670.1 930853 R 227941 CDS NP_829671.1 29840565 1218493 complement(931819..932001) 1 NC_003361.3 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 932001 rpmF 1218493 rpmF Chlamydophila caviae GPIC 50S ribosomal protein L32 NP_829671.1 931819 R 227941 CDS NP_829672.1 29840566 1218494 complement(932014..932475) 1 NC_003361.3 hypothetical protein 932475 1218494 CCA00809 Chlamydophila caviae GPIC hypothetical protein NP_829672.1 932014 R 227941 CDS NP_829673.1 29840567 1218495 932779..934311 1 NC_003361.3 similar to GB:X69464, PID:398210, and PID:398211; identified by sequence similarity; ribonuclease G 934311 cafA 1218495 cafA Chlamydophila caviae GPIC ribonuclease G NP_829673.1 932779 D 227941 CDS NP_829674.1 29840568 1218496 934320..935315 1 NC_003361.3 similar to GB:U00006, SP:P16528, GB:M31761, PID:146438, PID:146441, PID:396353, GB:U00096, and PID:1790449; identified by sequence similarity; glycerol-3-phosphate acyltransferase 935315 1218496 CCA00811 Chlamydophila caviae GPIC glycerol-3-phosphate acyltransferase NP_829674.1 934320 D 227941 CDS NP_829675.1 29840569 1218497 935318..938131 1 NC_003361.3 similar to GB:U00006, SP:P16528, GB:M31761, PID:146438, PID:146441, PID:396353, GB:U00096, and PID:1790449; identified by sequence similarity; insulinase metalloprotease 938131 ide 1218497 ide Chlamydophila caviae GPIC insulinase metalloprotease NP_829675.1 935318 D 227941 CDS NP_829676.1 29840570 1218498 complement(938139..939491) 1 NC_003361.3 similar to GB:U00006, SP:P16528, GB:M31761, PID:146438, PID:146441, PID:396353, GB:U00096, and PID:1790449; identified by sequence similarity; hypothetical protein 939491 1218498 CCA00813 Chlamydophila caviae GPIC hypothetical protein NP_829676.1 938139 R 227941 CDS NP_829677.1 29840571 1218499 939687..939914 1 NC_003361.3 hypothetical protein 939914 1218499 CCA00814 Chlamydophila caviae GPIC hypothetical protein NP_829677.1 939687 D 227941 CDS NP_829678.1 29840572 1218500 complement(939894..940769) 1 NC_003361.3 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 940769 ispE 1218500 ispE Chlamydophila caviae GPIC 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase NP_829678.1 939894 R 227941 CDS NP_829679.1 29840573 1218501 complement(940818..941336) 1 NC_003361.3 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 941336 rplI 1218501 rplI Chlamydophila caviae GPIC 50S ribosomal protein L9 NP_829679.1 940818 R 227941 CDS NP_829680.1 29840574 1218502 complement(941357..941605) 1 NC_003361.3 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 941605 rpsR 1218502 rpsR Chlamydophila caviae GPIC 30S ribosomal protein S18 NP_829680.1 941357 R 227941 CDS NP_829681.1 29840575 1218503 complement(941623..941961) 1 NC_003361.3 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 941961 rpsF 1218503 rpsF Chlamydophila caviae GPIC 30S ribosomal protein S6 NP_829681.1 941623 R 227941 CDS NP_829682.1 29840576 1218504 complement(942040..942591) 1 NC_003361.3 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 942591 pth 1218504 pth Chlamydophila caviae GPIC peptidyl-tRNA hydrolase NP_829682.1 942040 R 227941 CDS NP_829683.1 29840577 1218505 complement(942600..943157) 1 NC_003361.3 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 943157 1218505 CCA00820 Chlamydophila caviae GPIC 50S ribosomal protein L25 NP_829683.1 942600 R 227941 CDS NP_829684.1 29840578 1218506 943644..945071 1 NC_003361.3 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 945071 glgA 1218506 glgA Chlamydophila caviae GPIC glycogen synthase NP_829684.1 943644 D 227941 CDS NP_829685.1 29840579 1218507 complement(945053..945661) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02466; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 945661 pgsA 1218507 pgsA Chlamydophila caviae GPIC CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase NP_829685.1 945053 R 227941 CDS NP_829686.1 29840580 1218508 945963..948983 1 NC_003361.3 similar to GP:8979320; identified by sequence similarity; glycyl-tRNA synthetase, tetrameric type, alpha/beta subunits 948983 glyQS 1218508 glyQS Chlamydophila caviae GPIC glycyl-tRNA synthetase, tetrameric type, alpha/beta subunits NP_829686.1 945963 D 227941 CDS NP_829687.1 29840581 1218509 complement(949070..949516) 1 NC_003361.3 hypothetical protein 949516 1218509 CCA00824 Chlamydophila caviae GPIC hypothetical protein NP_829687.1 949070 R 227941 CDS NP_829688.1 29840582 1218510 complement(949628..950143) 1 NC_003361.3 similar to GP:7190214; identified by sequence similarity; hypothetical protein 950143 1218510 CCA00825 Chlamydophila caviae GPIC hypothetical protein NP_829688.1 949628 R 227941 CDS NP_829689.1 29840583 1218511 complement(950340..950849) 1 NC_003361.3 similar to GB:M59466, SP:P24153, PID:155308, GB:M59466, SP:P24153, and PID:155308; identified by sequence similarity; hypothetical protein 950849 1218511 CCA00826 Chlamydophila caviae GPIC hypothetical protein NP_829689.1 950340 R 227941 CDS NP_829690.1 29840584 1218512 complement(951006..951272) 1 NC_003361.3 similar to GB:M59466, SP:P24153, and PID:155308; identified by sequence similarity; hypothetical protein 951272 1218512 CCA00827 Chlamydophila caviae GPIC hypothetical protein NP_829690.1 951006 R 227941 CDS NP_829691.1 29840585 1218513 complement(951380..953155) 1 NC_003361.3 synthesizes RNA primers at the replication forks; DNA primase 953155 dnaG 1218513 dnaG Chlamydophila caviae GPIC DNA primase NP_829691.1 951380 R 227941 CDS NP_829692.1 29840586 1218514 953458..955938 1 NC_003361.3 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 955938 mutS 1218514 mutS Chlamydophila caviae GPIC DNA mismatch repair protein MutS NP_829692.1 953458 D 227941 CDS NP_829693.1 29840587 1218515 955942..957759 1 NC_003361.3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 957759 uvrC 1218515 uvrC Chlamydophila caviae GPIC excinuclease ABC subunit C NP_829693.1 955942 D 227941 CDS NP_829694.1 29840588 1218516 complement(957768..958250) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03780; hypothetical protein 958250 1218516 CCA00831 Chlamydophila caviae GPIC hypothetical protein NP_829694.1 957768 R 227941 CDS NP_829695.1 29840589 1218517 958341..958844 1 NC_003361.3 similar to GB:X72700, and PID:288292; identified by sequence similarity; hypothetical protein 958844 1218517 CCA00832 Chlamydophila caviae GPIC hypothetical protein NP_829695.1 958341 D 227941 CDS NP_829696.1 29840590 1218518 complement(958903..959208) 1 NC_003361.3 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 959208 rpsN 1218518 rpsN Chlamydophila caviae GPIC 30S ribosomal protein S14 NP_829696.1 958903 R 227941 CDS NP_829697.1 29840591 1218519 complement(959234..959371) 1 NC_003361.3 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 959371 rpmJ 1218519 rpmJ Chlamydophila caviae GPIC 50S ribosomal protein L36 NP_829697.1 959234 R 227941 CDS NP_829698.1 29840592 1218520 959785..960204 1 NC_003361.3 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 960204 rnpA 1218520 rnpA Chlamydophila caviae GPIC ribonuclease P NP_829698.1 959785 D 227941 CDS NP_829699.1 29840593 1218521 complement(960146..961192) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02834; hypothetical protein 961192 1218521 CCA00836 Chlamydophila caviae GPIC hypothetical protein NP_829699.1 960146 R 227941 CDS NP_829700.1 29840594 1218522 961214..961378 1 NC_003361.3 hypothetical protein 961378 1218522 CCA00837 Chlamydophila caviae GPIC hypothetical protein NP_829700.1 961214 D 227941 CDS NP_829701.1 29840595 1218523 961625..963055 1 NC_003361.3 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 963055 cysS 1218523 cysS Chlamydophila caviae GPIC cysteinyl-tRNA synthetase NP_829701.1 961625 D 227941 CDS NP_829702.1 29840596 1218524 complement(963052..964629) 1 NC_003361.3 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 964629 lysS 1218524 lysS Chlamydophila caviae GPIC lysyl-tRNA synthetase NP_829702.1 963052 R 227941 CDS NP_829703.1 29840597 1218525 964605..964751 1 NC_003361.3 hypothetical protein 964751 1218525 CCA00840 Chlamydophila caviae GPIC hypothetical protein NP_829703.1 964605 D 227941 CDS NP_829704.1 29840598 1218526 964645..964794 1 NC_003361.3 hypothetical protein 964794 1218526 CCA00841 Chlamydophila caviae GPIC hypothetical protein NP_829704.1 964645 D 227941 CDS NP_829705.1 29840599 1218527 complement(964859..965368) 1 NC_003361.3 similar to GB:L12145, SP:Q08633, PID:470687, PID:558154, GB:L12145, SP:Q08633, PID:470687, and PID:558154; identified by sequence similarity; hypothetical protein 965368 1218527 CCA00842 Chlamydophila caviae GPIC hypothetical protein NP_829705.1 964859 R 227941 CDS NP_829706.1 29840600 1218528 complement(965455..965562) 1 NC_003361.3 hypothetical protein 965562 1218528 CCA00843 Chlamydophila caviae GPIC hypothetical protein NP_829706.1 965455 R 227941 CDS NP_829707.1 29840601 1218529 965541..966263 1 NC_003361.3 similar to GB:L12145, SP:Q08633, PID:470687, and PID:558154; identified by sequence similarity; hypothetical protein 966263 1218529 CCA00844 Chlamydophila caviae GPIC hypothetical protein NP_829707.1 965541 D 227941 CDS NP_829708.1 29840602 1218530 966215..968464 1 NC_003361.3 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 968464 priA 1218530 priA Chlamydophila caviae GPIC primosome assembly protein PriA NP_829708.1 966215 D 227941 CDS NP_829709.1 29840603 1218531 complement(968408..969502) 1 NC_003361.3 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 969502 1218531 CCA00846 Chlamydophila caviae GPIC 8-amino-7-oxononanoate synthase NP_829709.1 968408 R 227941 CDS NP_829710.1 29840604 1218532 complement(969553..971172) 1 NC_003361.3 Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; long chain fatty acid--ACP ligase 971172 1218532 CCA00847 Chlamydophila caviae GPIC long chain fatty acid--ACP ligase NP_829710.1 969553 R 227941 CDS NP_829711.1 29840605 1218533 complement(971190..971951) 1 NC_003361.3 similar to SP:P00808, GB:X05798, GB:V00093, SP:P00808, GB:X05798, and GB:V00093; identified by sequence similarity; hypothetical protein 971951 1218533 CCA00848 Chlamydophila caviae GPIC hypothetical protein NP_829711.1 971190 R 227941 CDS NP_829712.1 29840606 1218534 972059..973039 1 NC_003361.3 similar to GP:8698799, SP:P00808, GB:X05798, and GB:V00093; identified by sequence similarity; 3'(2'),5'-bisphosphate nucleotidase 973039 1218534 CCA00849 Chlamydophila caviae GPIC 3'(2'),5'-bisphosphate nucleotidase NP_829712.1 972059 D 227941 CDS NP_829713.1 29840607 1218535 complement(973036..974085) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02812; Glu/Leu/Phe/Val dehydrogenase 974085 1218535 CCA00850 Chlamydophila caviae GPIC Glu/Leu/Phe/Val dehydrogenase NP_829713.1 973036 R 227941 CDS NP_829714.1 29840608 1218536 974252..974902 1 NC_003361.3 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 974902 ppa 1218536 ppa Chlamydophila caviae GPIC inorganic pyrophosphatase NP_829714.1 974252 D 227941 CDS NP_829715.1 29840609 1218537 complement(974943..975392) 1 NC_003361.3 identified by match to PFAM protein family HMM PF00293; mutT/Nudix family protein 975392 1218537 CCA00852 Chlamydophila caviae GPIC mutT/Nudix family protein NP_829715.1 974943 R 227941 CDS NP_829716.1 29840610 1218538 complement(975395..976645) 1 NC_003361.3 FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase 976645 fabF 1218538 fabF Chlamydophila caviae GPIC 3-oxoacyl-ACP synthase NP_829716.1 975395 R 227941 CDS NP_829717.1 29840611 1218539 complement(976663..977022) 1 NC_003361.3 similar to SP:P06565, GB:Z33876, and PID:493469; identified by sequence similarity; iojap-like protein 977022 1218539 CCA00854 Chlamydophila caviae GPIC iojap-like protein NP_829717.1 976663 R 227941 CDS NP_829718.1 29840612 1218540 complement(977081..977722) 1 NC_003361.3 similar to GB:M22916, GB:L10505, SP:P39790, PID:143210, PID:143702, GB:AL009126, GB:M22916, GB:L10505, SP:P39790, PID:143210, PID:143702, and GB:AL009126; identified by sequence similarity; hypothetical protein 977722 1218540 CCA00855 Chlamydophila caviae GPIC hypothetical protein NP_829718.1 977081 R 227941 CDS NP_829719.1 29840613 1218541 complement(977719..979383) 1 NC_003361.3 similar to GP:8547445; identified by sequence similarity; hypothetical protein 979383 1218541 CCA00856 Chlamydophila caviae GPIC hypothetical protein NP_829719.1 977719 R 227941 CDS NP_829720.1 29840614 1218542 979473..980534 1 NC_003361.3 similar to GP:7190185; identified by sequence similarity; hypothetical protein 980534 1218542 CCA00857 Chlamydophila caviae GPIC hypothetical protein NP_829720.1 979473 D 227941 CDS NP_829721.1 29840615 1218543 complement(980525..981553) 1 NC_003361.3 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 981553 miaA 1218543 miaA Chlamydophila caviae GPIC tRNA delta(2)-isopentenylpyrophosphate transferase NP_829721.1 980525 R 227941 CDS NP_829722.1 29840616 1218544 complement(981565..981897) 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR00377; anti-anti-sigma factor 981897 1218544 CCA00859 Chlamydophila caviae GPIC anti-anti-sigma factor NP_829722.1 981565 R 227941 CDS NP_829723.1 29840617 1218545 981973..982761 1 NC_003361.3 similar to GB:X72832; identified by sequence similarity; hypothetical protein 982761 1218545 CCA00860 Chlamydophila caviae GPIC hypothetical protein NP_829723.1 981973 D 227941 CDS NP_829724.1 29840618 1218546 982758..983090 1 NC_003361.3 similar to GB:X72832, GB:J05175, SP:P16442, PID:1783208, PID:1783212, PID:1783214, PID:1783218, PID:1783226, PID:2352626, PID:340078, and PID:992596; identified by sequence similarity; divalent cation tolerance protein 983090 cutA 1218546 cutA Chlamydophila caviae GPIC divalent cation tolerance protein NP_829724.1 982758 D 227941 CDS NP_829725.1 29840619 1218547 983198..983626 1 NC_003361.3 identified by match to PFAM protein family HMM PF00013; KH domain-containing protein 983626 1218547 CCA00862 Chlamydophila caviae GPIC KH domain-containing protein NP_829725.1 983198 D 227941 CDS NP_829726.1 29840620 1218548 complement(983695..986130) 1 NC_003361.3 catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine and catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase 986130 murC/ddlA 1218548 murC/ddlA Chlamydophila caviae GPIC bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase NP_829726.1 983695 R 227941 CDS NP_829727.1 29840621 1218549 complement(986138..987214) 1 NC_003361.3 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 987214 murG 1218549 murG Chlamydophila caviae GPIC undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase NP_829727.1 986138 R 227941 CDS NP_829728.1 29840622 1218550 complement(987123..988277) 1 NC_003361.3 similar to GB:L16784, SP:P33395, and PID:290384; identified by sequence similarity; cell division protein FtsW 988277 ftsW 1218550 ftsW Chlamydophila caviae GPIC cell division protein FtsW NP_829728.1 987123 R 227941 CDS NP_829729.1 29840623 1218551 complement(988296..989024) 1 NC_003361.3 similar to GB:L10328, SP:P04846, GB:M12163, PID:146649, PID:290510, GB:U00096, and PID:1790093; identified by sequence similarity; LysM domain-containing protein 989024 1218551 CCA00866 Chlamydophila caviae GPIC LysM domain-containing protein NP_829729.1 988296 R 227941 CDS NP_829730.1 29840624 1218552 complement(989021..990280) 1 NC_003361.3 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 990280 murD 1218552 murD Chlamydophila caviae GPIC UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase NP_829730.1 989021 R 227941 CDS NP_829731.1 29840625 1218553 complement(990284..991330) 1 NC_003361.3 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 991330 mraY 1218553 mraY Chlamydophila caviae GPIC phospho-N-acetylmuramoyl-pentapeptide- transferase NP_829731.1 990284 R 227941 CDS NP_829732.1 29840626 1218554 complement(991348..992694) 1 NC_003361.3 similar to GB:L21902, SP:P38945, and PID:347073; identified by sequence similarity; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 992694 murF 1218554 murF Chlamydophila caviae GPIC UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase NP_829732.1 991348 R 227941 CDS NP_829733.1 29840627 1218555 993075..994595 1 NC_003361.3 similar to GB:L21902, SP:P38945, and PID:347073; identified by sequence similarity; molecular chaperone GroEL 994595 1218555 CCA00870 Chlamydophila caviae GPIC molecular chaperone GroEL NP_829733.1 993075 D 227941 CDS NP_829734.1 29840628 1218556 994981..995862 1 NC_003361.3 similar to GB:L21902, SP:P38945, PID:347073, GB:L21902, SP:P38945, and PID:347073; identified by sequence similarity; hypothetical protein 995862 1218556 CCA00871 Chlamydophila caviae GPIC hypothetical protein NP_829734.1 994981 D 227941 CDS NP_829735.1 29840629 1218557 complement(995912..996133) 1 NC_003361.3 similar to GB:L21902, SP:P38945, and PID:347073; identified by sequence similarity; hypothetical protein 996133 1218557 CCA00872 Chlamydophila caviae GPIC hypothetical protein NP_829735.1 995912 R 227941 CDS NP_829736.1 29840630 1218558 complement(996192..996764) 1 NC_003361.3 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 996764 efp-1 1218558 efp-1 Chlamydophila caviae GPIC elongation factor P NP_829736.1 996192 R 227941 CDS NP_829737.1 29840631 1218559 996964..997839 1 NC_003361.3 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 997839 1218559 CCA00874 Chlamydophila caviae GPIC AMP nucleosidase NP_829737.1 996964 D 227941 CDS NP_829738.1 29840632 1218560 complement(997833..999830) 1 NC_003361.3 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 999830 tkt 1218560 tkt Chlamydophila caviae GPIC transketolase NP_829738.1 997833 R 227941 CDS NP_829739.1 29840633 1218561 1000094..1002721 1 NC_003361.3 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1002721 alaS 1218561 alaS Chlamydophila caviae GPIC alanyl-tRNA synthetase NP_829739.1 1000094 D 227941 CDS NP_829740.1 29840634 1218562 1002691..1005948 1 NC_003361.3 identified by match to PFAM protein family HMM PF03158; transcription-repair coupling factor 1005948 mfd 1218562 mfd Chlamydophila caviae GPIC transcription-repair coupling factor NP_829740.1 1002691 D 227941 CDS NP_829741.1 29840635 1218563 1005958..1006959 1 NC_003361.3 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1006959 hemE 1218563 hemE Chlamydophila caviae GPIC uroporphyrinogen decarboxylase NP_829741.1 1005958 D 227941 CDS NP_829742.1 29840636 1218564 1006932..1008308 1 NC_003361.3 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1008308 hemN 1218564 hemN Chlamydophila caviae GPIC coproporphyrinogen III oxidase NP_829742.1 1006932 D 227941 CDS NP_829743.1 29840637 1218565 1008305..1009573 1 NC_003361.3 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase 1009573 1218565 CCA00880 Chlamydophila caviae GPIC protoporphyrinogen oxidase NP_829743.1 1008305 D 227941 CDS NP_829744.1 29840638 1218566 complement(1009544..1012045) 1 NC_003361.3 similar to GP:7189892; identified by sequence similarity; hypothetical protein 1012045 1218566 CCA00881 Chlamydophila caviae GPIC hypothetical protein NP_829744.1 1009544 R 227941 CDS NP_829745.1 29840639 1218567 1012462..1012839 1 NC_003361.3 histone H1-like protein HC1 1012839 hctA 1218567 hctA Chlamydophila caviae GPIC histone H1-like protein HC1 NP_829745.1 1012462 D 227941 CDS NP_829746.1 29840640 1218568 1013066..1014271 1 NC_003361.3 similar to GP:8979259; identified by sequence similarity; RNA methyltransferase 1014271 1218568 CCA00883 Chlamydophila caviae GPIC RNA methyltransferase NP_829746.1 1013066 D 227941 CDS NP_829747.1 29840641 1218569 1014342..1014695 1 NC_003361.3 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1014695 yajC 1218569 yajC Chlamydophila caviae GPIC preprotein translocase subunit YajC NP_829747.1 1014342 D 227941 CDS NP_829748.1 29840642 1218570 1014815..1016110 1 NC_003361.3 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1016110 nqrF 1218570 nqrF Chlamydophila caviae GPIC Na(+)-translocating NADH-quinone reductase subunit F NP_829748.1 1014815 D 227941 CDS NP_829749.1 29840643 1218575 1026516..1028933 1 NC_003361.3 similar to GB:L25079, SP:P42823, and PID:529424; identified by sequence similarity; DNA translocase FtsK 1028933 1218575 CCA00887 Chlamydophila caviae GPIC DNA translocase FtsK NP_829749.1 1026516 D 227941 CDS NP_829750.1 29840644 1218576 1028938..1029726 1 NC_003361.3 similar to GB:X75338, and PID:406607; identified by sequence similarity; metal dependent hydrolase 1029726 1218576 CCA00888 Chlamydophila caviae GPIC metal dependent hydrolase NP_829750.1 1028938 D 227941 CDS NP_829751.1 29840645 1218577 1029723..1030385 1 NC_003361.3 similar to GP:8979252; identified by sequence similarity; SET domain-containing protein 1030385 1218577 CCA00889 Chlamydophila caviae GPIC SET domain-containing protein NP_829751.1 1029723 D 227941 CDS NP_829752.1 29840646 1218578 complement(1030390..1030842) 1 NC_003361.3 similar to GB:X75338, PID:406607, GB:X75338, and PID:406607; identified by sequence similarity; hypothetical protein 1030842 1218578 CCA00890 Chlamydophila caviae GPIC hypothetical protein NP_829752.1 1030390 R 227941 CDS NP_829753.1 29840647 1218579 complement(1030856..1032229) 1 NC_003361.3 similar to GB:X75338, and PID:406607; identified by sequence similarity; sodium/alanine symporter family protein 1032229 1218579 CCA00891 Chlamydophila caviae GPIC sodium/alanine symporter family protein NP_829753.1 1030856 R 227941 CDS NP_829754.1 29840648 1218580 complement(1032342..1032986) 1 NC_003361.3 similar to GB:X75338, and PID:406607; identified by sequence similarity; hypothetical protein 1032986 1218580 CCA00892 Chlamydophila caviae GPIC hypothetical protein NP_829754.1 1032342 R 227941 CDS NP_829755.1 29840649 1218581 1033243..1034610 1 NC_003361.3 similar to GB:X75338, and PID:406607; identified by sequence similarity; hypothetical protein 1034610 1218581 CCA00893 Chlamydophila caviae GPIC hypothetical protein NP_829755.1 1033243 D 227941 CDS NP_829756.1 29840650 1218582 complement(1034628..1035092) 1 NC_003361.3 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1035092 ribH 1218582 ribH Chlamydophila caviae GPIC 6,7-dimethyl-8-ribityllumazine synthase NP_829756.1 1034628 R 227941 CDS NP_829757.1 29840651 1218583 complement(1035105..1036364) 1 NC_003361.3 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 1036364 ribA/B 1218583 ribA/B Chlamydophila caviae GPIC bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein NP_829757.1 1035105 R 227941 CDS NP_829758.1 29840652 1218584 complement(1036450..1037556) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02579; riboflavin biosynthesis protein RibD 1037556 ribD 1218584 ribD Chlamydophila caviae GPIC riboflavin biosynthesis protein RibD NP_829758.1 1036450 R 227941 CDS NP_829759.1 29840653 1218585 1037600..1038880 1 NC_003361.3 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1038880 serS 1218585 serS Chlamydophila caviae GPIC seryl-tRNA synthetase NP_829759.1 1037600 D 227941 CDS NP_829760.1 29840654 1218586 1038945..1039688 1 NC_003361.3 similar to GB:L20805, and PID:305386; identified by sequence similarity; hypothetical protein 1039688 1218586 CCA00898 Chlamydophila caviae GPIC hypothetical protein NP_829760.1 1038945 D 227941 CDS NP_829761.1 29840655 1218587 1039704..1041677 1 NC_003361.3 identified by match to PFAM protein family HMM PF02442; cadmium-translocating P-type ATPase 1041677 cadA 1218587 cadA Chlamydophila caviae GPIC cadmium-translocating P-type ATPase NP_829761.1 1039704 D 227941 CDS NP_829762.1 29840656 1218588 complement(1041680..1042819) 1 NC_003361.3 similar to GB:L20805, and PID:305386; identified by sequence similarity; cell shape-determining protein MrdB 1042819 rodA 1218588 rodA Chlamydophila caviae GPIC cell shape-determining protein MrdB NP_829762.1 1041680 R 227941 CDS NP_829763.1 29840657 1218589 1042855..1043445 1 NC_003361.3 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 1043445 1218589 CCA00901 Chlamydophila caviae GPIC biotin--protein ligase NP_829763.1 1042855 D 227941 CDS NP_829764.1 29840658 1218590 complement(1043401..1043937) 1 NC_003361.3 similar to GB:L20805, and PID:305386; identified by sequence similarity; hypothetical protein 1043937 1218590 CCA00902 Chlamydophila caviae GPIC hypothetical protein NP_829764.1 1043401 R 227941 CDS NP_829765.1 29840659 1218592 1044828..1045511 1 NC_003361.3 catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1045511 gpmA 1218592 gpmA Chlamydophila caviae GPIC phosphoglyceromutase NP_829765.1 1044828 D 227941 CDS NP_829766.1 29840660 1218593 1045466..1046623 1 NC_003361.3 similar to GB:L20805, and PID:305386; identified by sequence similarity; nifS protein 1046623 1218593 CCA00905 Chlamydophila caviae GPIC nifS protein NP_829766.1 1045466 D 227941 CDS NP_829767.1 29840661 1218594 1046620..1047441 1 NC_003361.3 similar to GB:L20805, and PID:305386; identified by sequence similarity; NifU protein 1047441 1218594 CCA00906 Chlamydophila caviae GPIC NifU protein NP_829767.1 1046620 D 227941 CDS NP_829768.1 29840662 1218595 1047545..1048558 1 NC_003361.3 similar to GB:S85353, and PID:246437; identified by sequence similarity; type III secretion system protein 1048558 1218595 CCA00907 Chlamydophila caviae GPIC type III secretion system protein NP_829768.1 1047545 D 227941 CDS NP_829769.1 29840663 1218596 1048582..1049133 1 NC_003361.3 similar to GB:S85353, and PID:246437; identified by sequence similarity; hypothetical protein 1049133 1218596 CCA00908 Chlamydophila caviae GPIC hypothetical protein NP_829769.1 1048582 D 227941 CDS NP_829770.1 29840664 1218597 1049130..1050434 1 NC_003361.3 involved in type III protein export; type III secretion system ATPase 1050434 1218597 CCA00909 Chlamydophila caviae GPIC type III secretion system ATPase NP_829770.1 1049130 D 227941 CDS NP_829771.1 29840665 1218598 1050427..1050786 1 NC_003361.3 similar to GB:S85353, and PID:246437; identified by sequence similarity; hypothetical protein 1050786 1218598 CCA00910 Chlamydophila caviae GPIC hypothetical protein NP_829771.1 1050427 D 227941 CDS NP_829772.1 29840666 1218599 1050806..1052188 1 NC_003361.3 similar to GB:D28770, PID:523232, PID:523234, and PID:2335043; identified by sequence similarity; UTP-glucose-1-phosphate uridylyltransferase 1052188 1218599 CCA00911 Chlamydophila caviae GPIC UTP-glucose-1-phosphate uridylyltransferase NP_829772.1 1050806 D 227941 CDS NP_829773.1 29840667 1218600 1052185..1053189 1 NC_003361.3 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1053189 gpsA 1218600 gpsA Chlamydophila caviae GPIC NAD(P)H-dependent glycerol-3-phosphate dehydrogenase NP_829773.1 1052185 D 227941 CDS NP_829774.1 29840668 1218601 1053322..1054356 1 NC_003361.3 similar to GB:D28770, PID:523232, PID:523234, and PID:2335043; identified by sequence similarity; major outer membrane protein 1054356 1218601 CCA00913 Chlamydophila caviae GPIC major outer membrane protein NP_829774.1 1053322 D 227941 CDS NP_829775.1 29840669 1218602 complement(1054353..1055519) 1 NC_003361.3 similar to GB:M35514, SP:P13380, GB:M97156, GB:M97157, GB:U02559, GB:U02560, and PID:153821; identified by sequence similarity; hypothetical protein 1055519 1218602 CCA00914 Chlamydophila caviae GPIC hypothetical protein NP_829775.1 1054353 R 227941 CDS NP_829776.1 29840670 1218603 complement(1055528..1057771) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03081; hypothetical protein 1057771 1218603 CCA00915 Chlamydophila caviae GPIC hypothetical protein NP_829776.1 1055528 R 227941 CDS NP_829777.1 29840671 1218604 complement(1057894..1059696) 1 NC_003361.3 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 1059696 pckA 1218604 pckA Chlamydophila caviae GPIC phosphoenolpyruvate carboxykinase NP_829777.1 1057894 R 227941 CDS NP_829778.1 29840672 1218605 complement(1059693..1060793) 1 NC_003361.3 similar to GB:X77864, PID:951038, and PID:1333728; identified by sequence similarity; rod shape-determining protein MreB 1060793 mreB 1218605 mreB Chlamydophila caviae GPIC rod shape-determining protein MreB NP_829778.1 1059693 R 227941 CDS NP_829779.1 29840673 1218606 complement(1060798..1064298) 1 NC_003361.3 similar to GB:X77864, PID:951038, and PID:1333728; identified by sequence similarity; SNF2 family helicase 1064298 helZ 1218606 helZ Chlamydophila caviae GPIC SNF2 family helicase NP_829779.1 1060798 R 227941 CDS NP_829780.1 29840674 1218607 1064594..1065919 1 NC_003361.3 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1065919 tig 1218607 tig Chlamydophila caviae GPIC trigger factor NP_829780.1 1064594 D 227941 CDS NP_829781.1 29840675 1218608 1066098..1066709 1 NC_003361.3 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1066709 clpP 1218608 clpP Chlamydophila caviae GPIC ATP-dependent Clp protease proteolytic subunit NP_829781.1 1066098 D 227941 CDS NP_829782.1 29840676 1218609 1066719..1067984 1 NC_003361.3 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1067984 clpX 1218609 clpX Chlamydophila caviae GPIC ATP-dependent protease ATP-binding subunit ClpX NP_829782.1 1066719 D 227941 CDS NP_829783.1 29840677 1218610 1068014..1069246 1 NC_003361.3 similar to GB:M21161, SP:P13421, and PID:152864; identified by sequence similarity; poly(A) polymerase 1069246 1218610 CCA00922 Chlamydophila caviae GPIC poly(A) polymerase NP_829783.1 1068014 D 227941 CDS NP_829784.1 29840678 1218611 1069368..1070792 1 NC_003361.3 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1070792 engA 1218611 engA Chlamydophila caviae GPIC GTP-binding protein EngA NP_829784.1 1069368 D 227941 CDS NP_829785.1 29840679 1218612 1070867..1071397 1 NC_003361.3 hypothetical protein 1071397 1218612 CCA00924 Chlamydophila caviae GPIC hypothetical protein NP_829785.1 1070867 D 227941 CDS NP_829786.1 29840680 1218613 complement(1071456..1074368) 1 NC_003361.3 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 1074368 secA 1218613 secA Chlamydophila caviae GPIC preprotein translocase subunit SecA NP_829786.1 1071456 R 227941 CDS NP_829787.1 29840681 1218614 complement(1074556..1075881) 1 NC_003361.3 similar to GB:M88334, SP:P25526, PID:147901, GB:U00096, and PID:1789015; identified by sequence similarity; hypothetical protein 1075881 1218614 CCA00926 Chlamydophila caviae GPIC hypothetical protein NP_829787.1 1074556 R 227941 CDS NP_829788.1 29840682 1218615 complement(1075947..1076846) 1 NC_003361.3 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 1076846 psd 1218615 psd Chlamydophila caviae GPIC phosphatidylserine decarboxylase NP_829788.1 1075947 R 227941 CDS NP_829789.1 29840683 1218616 1077003..1078334 1 NC_003361.3 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1078334 trmE 1218616 trmE Chlamydophila caviae GPIC tRNA modification GTPase TrmE NP_829789.1 1077003 D 227941 CDS NP_829790.1 29840684 1218617 1078324..1078968 1 NC_003361.3 similar to SP:P39788; identified by sequence similarity; endonuclease III 1078968 nth 1218617 nth Chlamydophila caviae GPIC endonuclease III NP_829790.1 1078324 D 227941 CDS NP_829791.1 29840685 1218618 1079131..1080360 1 NC_003361.3 identified by match to PFAM protein family HMM PF02665; branched-chain amino acid transport system carrier protein BrnQ 1080360 brnQ 1218618 brnQ Chlamydophila caviae GPIC branched-chain amino acid transport system carrier protein BrnQ NP_829791.1 1079131 D 227941 CDS NP_829792.1 29840686 1218619 1080395..1084012 1 NC_003361.3 similar to GB:M57961, and PID:149570; identified by sequence similarity; Snf2/Rad54 family helicase 1084012 1218619 CCA00931 Chlamydophila caviae GPIC Snf2/Rad54 family helicase NP_829792.1 1080395 D 227941 CDS NP_829793.1 29840687 1218620 complement(1084035..1084502) 1 NC_003361.3 similar to GB:M57961, and PID:149570; identified by sequence similarity; hypothetical protein 1084502 1218620 CCA00932 Chlamydophila caviae GPIC hypothetical protein NP_829793.1 1084035 R 227941 CDS NP_829794.1 29840688 1218621 1084766..1086154 1 NC_003361.3 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1086154 1218621 CCA00933 Chlamydophila caviae GPIC dihydrolipoamide dehydrogenase NP_829794.1 1084766 D 227941 CDS NP_829795.1 29840689 1218622 1086151..1087089 1 NC_003361.3 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1087089 lipA 1218622 lipA Chlamydophila caviae GPIC lipoyl synthase NP_829795.1 1086151 D 227941 CDS NP_829796.1 29840690 1218623 1087271..1088263 1 NC_003361.3 similar to GB:L13940, PID:295432, and SP:P54297; identified by sequence similarity; type III secretion protein SctJ 1088263 sctJ 1218623 sctJ Chlamydophila caviae GPIC type III secretion protein SctJ NP_829796.1 1087271 D 227941 CDS NP_829797.1 29840691 1218624 1088263..1089096 1 NC_003361.3 similar to GB:L13940, PID:295432, SP:P54297, GB:L13940, PID:295432, and SP:P54297; identified by sequence similarity; hypothetical protein 1089096 1218624 CCA00936 Chlamydophila caviae GPIC hypothetical protein NP_829797.1 1088263 D 227941 CDS NP_829798.1 29840692 1218625 1089263..1089952 1 NC_003361.3 similar to GB:X05302; identified by sequence similarity; type III secretion system protein 1089952 sctL 1218625 sctL Chlamydophila caviae GPIC type III secretion system protein NP_829798.1 1089263 D 227941 CDS NP_829799.1 29840693 1218626 1089967..1090878 1 NC_003361.3 similar to GB:X05302; identified by sequence similarity; type III secretion system protein 1090878 sctR 1218626 sctR Chlamydophila caviae GPIC type III secretion system protein NP_829799.1 1089967 D 227941 CDS NP_829800.1 29840694 1218627 1090888..1091172 1 NC_003361.3 similar to GB:X05302; identified by sequence similarity; type III secretion inner membrane protein SctS 1091172 sctS 1218627 sctS Chlamydophila caviae GPIC type III secretion inner membrane protein SctS NP_829800.1 1090888 D 227941 CDS NP_829801.1 29840695 1218628 1091179..1092048 1 NC_003361.3 identified by match to PFAM protein family HMM PF02537; type III secretion inner membrane protein SctT 1092048 sctT 1218628 sctT Chlamydophila caviae GPIC type III secretion inner membrane protein SctT NP_829801.1 1091179 D 227941 CDS NP_829802.1 29840696 1218629 complement(1092148..1092597) 1 NC_003361.3 identified by match to PFAM protein family HMM PF03208; hypothetical protein 1092597 1218629 CCA00941 Chlamydophila caviae GPIC hypothetical protein NP_829802.1 1092148 R 227941 CDS NP_829803.1 29840697 1218630 complement(1092691..1093695) 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR01529; hypothetical protein 1093695 1218630 CCA00942 Chlamydophila caviae GPIC hypothetical protein NP_829803.1 1092691 R 227941 CDS NP_829804.1 29840698 1218631 complement(1093698..1094240) 1 NC_003361.3 hypothetical protein 1094240 1218631 CCA00943 Chlamydophila caviae GPIC hypothetical protein NP_829804.1 1093698 R 227941 CDS NP_829805.1 29840699 1218632 complement(1094225..1094662) 1 NC_003361.3 similar to GB:M34239, SP:P33119, GB:M80338, PID:144973, and PID:144977; identified by sequence similarity; hypothetical protein 1094662 1218632 CCA00944 Chlamydophila caviae GPIC hypothetical protein NP_829805.1 1094225 R 227941 CDS NP_829806.1 29840700 1218633 complement(1094671..1095048) 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR01710; hypothetical protein 1095048 1218633 CCA00945 Chlamydophila caviae GPIC hypothetical protein NP_829806.1 1094671 R 227941 CDS NP_829807.1 29840701 1218634 complement(1095068..1096243) 1 NC_003361.3 similar to GB:L05176, SP:Q02540, and PID:151181; identified by sequence similarity; general secretion pathway protein F 1096243 gspF 1218634 gspF Chlamydophila caviae GPIC general secretion pathway protein F NP_829807.1 1095068 R 227941 CDS NP_829808.1 29840702 1218635 complement(1096258..1097751) 1 NC_003361.3 similar to GB:L05176, SP:Q02540, and PID:151181; identified by sequence similarity; general secretion pathway protein E 1097751 gspE 1218635 gspE Chlamydophila caviae GPIC general secretion pathway protein E NP_829808.1 1096258 R 227941 CDS NP_829809.1 29840703 1218636 complement(1097741..1100002) 1 NC_003361.3 similar to GB:X73124, SP:P39587, PID:413943, and GB:AL009126; identified by sequence similarity; general secretion pathway protein D 1100002 gspD 1218636 gspD Chlamydophila caviae GPIC general secretion pathway protein D NP_829809.1 1097741 R 227941 CDS NP_829810.1 29840704 1218637 complement(1100003..1101316) 1 NC_003361.3 hypothetical protein 1101316 1218637 CCA00949 Chlamydophila caviae GPIC hypothetical protein NP_829810.1 1100003 R 227941 CDS NP_829811.1 29840705 1218638 complement(1101437..1102507) 1 NC_003361.3 similar to GB:X73124, SP:P39587, PID:413943, and GB:AL009126; identified by sequence similarity; proline dipeptidase 1102507 1218638 CCA00950 Chlamydophila caviae GPIC proline dipeptidase NP_829811.1 1101437 R 227941 CDS NP_829812.1 29840706 1218639 complement(1102511..1104253) 1 NC_003361.3 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1104253 mutL 1218639 mutL Chlamydophila caviae GPIC DNA mismatch repair protein NP_829812.1 1102511 R 227941 CDS NP_829813.1 29840707 1218640 1104481..1105164 1 NC_003361.3 similar to GP:7190892; identified by sequence similarity; type III secretion chaperone SycD 1105164 sycD 1218640 sycD Chlamydophila caviae GPIC type III secretion chaperone SycD NP_829813.1 1104481 D 227941 CDS NP_829814.1 29840708 1218641 1105188..1105586 1 NC_003361.3 similar to GB:L25079, SP:P42823, and PID:529424; identified by sequence similarity; hypothetical protein 1105586 1218641 CCA00953 Chlamydophila caviae GPIC hypothetical protein NP_829814.1 1105188 D 227941 CDS NP_829815.1 29840709 1218642 1105624..1107108 1 NC_003361.3 similar to GP:7190894; identified by sequence similarity; hypothetical protein 1107108 1218642 CCA00954 Chlamydophila caviae GPIC hypothetical protein NP_829815.1 1105624 D 227941 CDS NP_829816.1 29840710 1218643 1107138..1108454 1 NC_003361.3 similar to GP:7190895; identified by sequence similarity; hypothetical protein 1108454 1218643 CCA00955 Chlamydophila caviae GPIC hypothetical protein NP_829816.1 1107138 D 227941 CDS NP_829817.1 29840711 1218644 complement(1108533..1109438) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02592; hypothetical protein 1109438 1218644 CCA00956 Chlamydophila caviae GPIC hypothetical protein NP_829817.1 1108533 R 227941 CDS NP_829818.1 29840712 1218645 1109660..1111567 1 NC_003361.3 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1111567 thrS 1218645 thrS Chlamydophila caviae GPIC threonyl-tRNA synthetase NP_829818.1 1109660 D 227941 CDS NP_829819.1 29840713 1218646 1111598..1112365 1 NC_003361.3 similar to GB:M99391, and PID:152478; identified by sequence similarity; chromosome partitioning ATPase ParA 1112365 1218646 CCA00958 Chlamydophila caviae GPIC chromosome partitioning ATPase ParA NP_829819.1 1111598 D 227941 CDS NP_829820.1 29840714 1218647 1112370..1113122 1 NC_003361.3 similar to GB:M55546, SP:P23988, PID:154233, GB:L04791, SP:Q03468, and PID:182181; identified by sequence similarity; hypothetical protein 1113122 1218647 CCA00959 Chlamydophila caviae GPIC hypothetical protein NP_829820.1 1112370 D 227941 CDS NP_829821.1 29840715 1218648 1113126..1113680 1 NC_003361.3 similar to GB:M55546, SP:P23988, and PID:154233; identified by sequence similarity; hypothetical protein 1113680 1218648 CCA00960 Chlamydophila caviae GPIC hypothetical protein NP_829821.1 1113126 D 227941 CDS NP_829822.1 29840716 1218649 1113691..1114728 1 NC_003361.3 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1114728 trpS 1218649 trpS Chlamydophila caviae GPIC tryptophanyl-tRNA synthetase NP_829822.1 1113691 D 227941 CDS NP_829823.1 29840717 1218650 1114741..1116711 1 NC_003361.3 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1116711 uvrB 1218650 uvrB Chlamydophila caviae GPIC excinuclease ABC subunit B NP_829823.1 1114741 D 227941 CDS NP_829824.1 29840718 1218651 1116890..1118164 1 NC_003361.3 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1118164 eno 1218651 eno Chlamydophila caviae GPIC phosphopyruvate hydratase NP_829824.1 1116890 D 227941 CDS NP_829825.1 29840719 1218652 1118413..1120320 1 NC_003361.3 similar to GB:U00006, SP:P16528, GB:M31761, PID:146438, PID:146441, PID:396353, GB:U00096, and PID:1790449; identified by sequence similarity; regulatory protein 1120320 1218652 CCA00964 Chlamydophila caviae GPIC regulatory protein NP_829825.1 1118413 D 227941 CDS NP_829826.1 29840720 1218653 1120317..1122140 1 NC_003361.3 similar to GB:U00006, SP:P16528, GB:M31761, PID:146438, PID:146441, PID:396353, GB:U00096, and PID:1790449; identified by sequence similarity; hypothetical protein 1122140 1218653 CCA00965 Chlamydophila caviae GPIC hypothetical protein NP_829826.1 1120317 D 227941 CDS NP_829827.1 29840721 1218654 1122718..1125609 1 NC_003361.3 identified by match to PFAM protein family HMM PF02889; hypothetical protein 1125609 1218654 CCA00966 Chlamydophila caviae GPIC hypothetical protein NP_829827.1 1122718 D 227941 CDS NP_829828.1 29840722 1218655 complement(1125606..1126397) 1 NC_003361.3 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1126397 sdhB 1218655 sdhB Chlamydophila caviae GPIC succinate dehydrogenase iron-sulfur subunit NP_829828.1 1125606 R 227941 CDS NP_829829.1 29840723 1218656 complement(1126412..1128295) 1 NC_003361.3 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1128295 sdhA 1218656 sdhA Chlamydophila caviae GPIC succinate dehydrogenase flavoprotein subunit NP_829829.1 1126412 R 227941 CDS NP_829830.1 29840724 1218657 complement(1128300..1129193) 1 NC_003361.3 similar to GB:X56071, PID:507063, and SP:P51603; identified by sequence similarity; succinate dehydrogenase, cytochrome b558 subunit 1129193 1218657 CCA00969 Chlamydophila caviae GPIC succinate dehydrogenase, cytochrome b558 subunit NP_829830.1 1128300 R 227941 CDS NP_829831.1 29840725 1218658 complement(1129289..1130089) 1 NC_003361.3 identified by match to PFAM protein family HMM PF01026; TatD family deoxyribonuclease 1130089 1218658 CCA00970 Chlamydophila caviae GPIC TatD family deoxyribonuclease NP_829831.1 1129289 R 227941 CDS NP_829832.1 29840726 1218659 complement(1130257..1132395) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02411; thiol:disulfide interchange protein DsbD 1132395 1218659 CCA00971 Chlamydophila caviae GPIC thiol:disulfide interchange protein DsbD NP_829832.1 1130257 R 227941 CDS NP_829833.1 29840727 1218660 1132565..1133263 1 NC_003361.3 similar to GB:M59466, SP:P24153, and PID:155308; identified by sequence similarity; MotA/TolQ/ExbB proton channel family protein 1133263 1218660 CCA00972 Chlamydophila caviae GPIC MotA/TolQ/ExbB proton channel family protein NP_829833.1 1132565 D 227941 CDS NP_829834.1 29840728 1218661 1133260..1133667 1 NC_003361.3 similar to GP:7190914; identified by sequence similarity; ExbD/TolR family protein 1133667 1218661 CCA00973 Chlamydophila caviae GPIC ExbD/TolR family protein NP_829834.1 1133260 D 227941 CDS NP_829835.1 29840729 1218662 1133670..1134431 1 NC_003361.3 similar to GP:8979156; identified by sequence similarity; hypothetical protein 1134431 1218662 CCA00974 Chlamydophila caviae GPIC hypothetical protein NP_829835.1 1133670 D 227941 CDS NP_829836.1 29840730 1218663 1134451..1135734 1 NC_003361.3 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1135734 tolB 1218663 tolB Chlamydophila caviae GPIC translocation protein TolB NP_829836.1 1134451 D 227941 CDS NP_829837.1 29840731 1218664 1135745..1136320 1 NC_003361.3 identified by match to PFAM protein family HMM PF00691; peptidoglycan-associated lipoprotein 1136320 1218664 CCA00976 Chlamydophila caviae GPIC peptidoglycan-associated lipoprotein NP_829837.1 1135745 D 227941 CDS NP_829838.1 29840732 1218665 1136310..1136927 1 NC_003361.3 similar to GB:X76500, and PID:520921; identified by sequence similarity; LysM domain-containing protein 1136927 1218665 CCA00977 Chlamydophila caviae GPIC LysM domain-containing protein NP_829838.1 1136310 D 227941 CDS NP_829839.1 29840733 1218666 1137026..1137424 1 NC_003361.3 similar to GB:X76500, and PID:520921; identified by sequence similarity; hypothetical protein 1137424 1218666 CCA00978 Chlamydophila caviae GPIC hypothetical protein NP_829839.1 1137026 D 227941 CDS NP_829840.1 29840734 1218667 complement(1137421..1138011) 1 NC_003361.3 similar to GP:5457310; identified by sequence similarity; anti-oxidant AhpCTSA family protein 1138011 1218667 CCA00979 Chlamydophila caviae GPIC anti-oxidant AhpCTSA family protein NP_829840.1 1137421 R 227941 CDS NP_829841.1 29840735 1218668 complement(1138273..1139883) 1 NC_003361.3 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; molecular chaperone GroEL 1139883 groEL 1218668 groEL Chlamydophila caviae GPIC molecular chaperone GroEL NP_829841.1 1138273 R 227941 CDS NP_829842.1 29840736 1218669 complement(1139994..1141226) 1 NC_003361.3 similar to GP:7190922, and GP:7190922; identified by sequence similarity; hypothetical protein 1141226 1218669 CCA00981 Chlamydophila caviae GPIC hypothetical protein NP_829842.1 1139994 R 227941 CDS NP_829843.1 29840737 1218670 1141462..1142082 1 NC_003361.3 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 1142082 1218670 CCA00982 Chlamydophila caviae GPIC deoxyribonucleotide triphosphate pyrophosphatase NP_829843.1 1141462 D 227941 CDS NP_829844.1 29840738 1218671 complement(1142065..1142298) 1 NC_003361.3 similar to GB:D10387, SP:P27735, PID:216968, and PID:47275; identified by sequence similarity; hypothetical protein 1142298 1218671 CCA00983 Chlamydophila caviae GPIC hypothetical protein NP_829844.1 1142065 R 227941 CDS NP_829845.1 29840739 1218672 complement(1142295..1142984) 1 NC_003361.3 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1142984 ung 1218672 ung Chlamydophila caviae GPIC uracil-DNA glycosylase NP_829845.1 1142295 R 227941 CDS NP_829846.1 29840740 1218673 1143095..1145008 1 NC_003361.3 similar to GB:D10387, SP:P27735, PID:216968, and PID:47275; identified by sequence similarity; ATP-dependent helicase PcrA 1145008 pcrA 1218673 pcrA Chlamydophila caviae GPIC ATP-dependent helicase PcrA NP_829846.1 1143095 D 227941 CDS NP_829847.1 29840741 1218674 1145011..1146282 1 NC_003361.3 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 1146282 1218674 CCA00986 Chlamydophila caviae GPIC RNA polymerase factor sigma-54 NP_829847.1 1145011 D 227941 CDS NP_829848.1 29840742 1218675 complement(1146304..1147101) 1 NC_003361.3 similar to GB:M94110, SP:Q04441, and PID:142786; identified by sequence similarity; hypothetical protein 1147101 1218675 CCA00987 Chlamydophila caviae GPIC hypothetical protein NP_829848.1 1146304 R 227941 CDS NP_829849.1 29840743 1218676 1147744..1150329 1 NC_003361.3 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I/SWI domain fusion protein 1150329 topA 1218676 topA Chlamydophila caviae GPIC DNA topoisomerase I/SWI domain fusion protein NP_829849.1 1147744 D 227941 CDS NP_829850.1 29840744 1218677 complement(1150305..1151324) 1 NC_003361.3 similar to GB:M20181, GB:M13239, SP:P08407, GB:M20146, and PID:147094; identified by sequence similarity; nifR3 family TIM-barrel protein 1151324 1218677 CCA00989 Chlamydophila caviae GPIC nifR3 family TIM-barrel protein NP_829850.1 1150305 R 227941 CDS NP_829851.1 29840745 1218678 complement(1151303..1151599) 1 NC_003361.3 similar to GB:M20181, GB:M13239, SP:P08407, GB:M20146, and PID:147094; identified by sequence similarity; hypothetical protein 1151599 1218678 CCA00990 Chlamydophila caviae GPIC hypothetical protein NP_829851.1 1151303 R 227941 CDS NP_829852.1 29840746 1218679 1151696..1153096 1 NC_003361.3 similar to GB:L12145, SP:Q08633, PID:470687, and PID:558154; identified by sequence similarity; hypothetical protein 1153096 1218679 CCA00991 Chlamydophila caviae GPIC hypothetical protein NP_829852.1 1151696 D 227941 CDS NP_829853.1 29840747 1218680 1153093..1153677 1 NC_003361.3 similar to GB:L12145, SP:Q08633, PID:470687, and PID:558154; identified by sequence similarity; hypothetical protein 1153677 1218680 CCA00992 Chlamydophila caviae GPIC hypothetical protein NP_829853.1 1153093 D 227941 CDS NP_829854.1 29840748 1218681 1153668..1154945 1 NC_003361.3 similar to GB:L12145, SP:Q08633, PID:470687, and PID:558154; identified by sequence similarity; hypothetical protein 1154945 1218681 CCA00993 Chlamydophila caviae GPIC hypothetical protein NP_829854.1 1153668 D 227941 CDS NP_829855.1 29840749 1218682 1154948..1155490 1 NC_003361.3 similar to GB:L12145, SP:Q08633, PID:470687, and PID:558154; identified by sequence similarity; 5-formyltetrahydrofolate cyclo-ligase 1155490 1218682 CCA00994 Chlamydophila caviae GPIC 5-formyltetrahydrofolate cyclo-ligase NP_829855.1 1154948 D 227941 CDS NP_829856.1 29840750 1218683 1155893..1156945 1 NC_003361.3 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1156945 recA 1218683 recA Chlamydophila caviae GPIC recombinase A NP_829856.1 1155893 D 227941 CDS NP_829857.1 29840751 1218684 complement(1157003..1157731) 1 NC_003361.3 similar to GP:7190927; identified by sequence similarity; coenzyme PQQ synthesis protein c 1157731 1218684 CCA00996 Chlamydophila caviae GPIC coenzyme PQQ synthesis protein c NP_829857.1 1157003 R 227941 CDS NP_829858.1 29840752 1218685 complement(1157748..1158482) 1 NC_003361.3 similar to GP:8979133; identified by sequence similarity; hypothetical protein 1158482 1218685 CCA00997 Chlamydophila caviae GPIC hypothetical protein NP_829858.1 1157748 R 227941 CDS NP_829859.1 29840753 1218686 complement(1158454..1158942) 1 NC_003361.3 identified by match to PFAM protein family HMM PF00186; dihydrofolate reductase 1158942 folA 1218686 folA Chlamydophila caviae GPIC dihydrofolate reductase NP_829859.1 1158454 R 227941 CDS NP_829860.1 29840754 1218687 complement(1158935..1160278) 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1160278 folKP 1218687 folKP Chlamydophila caviae GPIC 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase NP_829860.1 1158935 R 227941 CDS NP_829861.1 29840755 1218688 complement(1160275..1160616) 1 NC_003361.3 similar to EGAD|163839; identified by sequence similarity; dihydroneopterin aldolase 1160616 folB 1218688 folB Chlamydophila caviae GPIC dihydroneopterin aldolase NP_829861.1 1160275 R 227941 CDS NP_829862.1 29840756 1218689 complement(1160685..1162403) 1 NC_003361.3 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor 1162403 rpoD 1218689 rpoD Chlamydophila caviae GPIC RNA polymerase sigma factor NP_829862.1 1160685 R 227941 CDS NP_829863.1 29840757 1218690 complement(1162514..1163719) 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR01000; hypothetical protein 1163719 1218690 CCA01002 Chlamydophila caviae GPIC hypothetical protein NP_829863.1 1162514 R 227941 CDS NP_829864.1 29840758 1218691 1164009..1164305 1 NC_003361.3 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1164305 rpsT 1218691 rpsT Chlamydophila caviae GPIC 30S ribosomal protein S20 NP_829864.1 1164009 D 227941 CDS NP_829865.1 29840759 1218692 1164320..1165240 1 NC_003361.3 similar to GB:M22916, GB:L10505, SP:P39790, PID:143210, PID:143702, and GB:AL009126; identified by sequence similarity; hypothetical protein 1165240 1218692 CCA01004 Chlamydophila caviae GPIC hypothetical protein NP_829865.1 1164320 D 227941 CDS NP_829866.1 29840760 1218693 complement(1165264..1166769) 1 NC_003361.3 similar to GP:8979125; identified by sequence similarity; exodeoxyribonuclease V subunit alpha 1166769 recD 1218693 recD Chlamydophila caviae GPIC exodeoxyribonuclease V subunit alpha NP_829866.1 1165264 R 227941 CDS NP_829867.1 29840761 1218694 complement(1166785..1168629) 1 NC_003361.3 identified by match to PFAM protein family HMM PF02616; hypothetical protein 1168629 1218694 CCA01006 Chlamydophila caviae GPIC hypothetical protein NP_829867.1 1166785 R 227941 CDS NP_829868.1 29840762 1218695 1168830..1169531 1 NC_003361.3 identified by match to TIGR protein family HMM TIGR01387; transcriptional regulator 1169531 tctD 1218695 tctD Chlamydophila caviae GPIC transcriptional regulator NP_829868.1 1168830 D 227941 CDS NP_829869.1 29840763 1218696 1169603..1170217 1 NC_003361.3 identified by match to PFAM protein family HMM PF00132; LpxA family transferase 1170217 1218696 CCA01008 Chlamydophila caviae GPIC LpxA family transferase NP_829869.1 1169603 D 227941 CDS NP_829870.1 29840764 1218697 1170233..1171114 1 NC_003361.3 similar to SP:O66126, and GB:X72832; identified by sequence similarity; geranyltranstransferase 1171114 ispA 1218697 ispA Chlamydophila caviae GPIC geranyltranstransferase NP_829870.1 1170233 D 227941 CDS NP_829871.1 29840765 1218698 complement(1171223..1171477) 1 NC_003361.3 similar to GP:7190947, and GP:7190947; identified by sequence similarity; hypothetical protein 1171477 1218698 CCA01010 Chlamydophila caviae GPIC hypothetical protein NP_829871.1 1171223 R 227941 CDS NP_829872.1 29840766 1218699 complement(1171560..1173152) 1 NC_003361.3 similar to GB:M35514, SP:P13380, GB:M97156, GB:M97157, GB:U02559, GB:U02560, and PID:153821; identified by sequence similarity; hypothetical protein 1173152 1218699 CCA01011 Chlamydophila caviae GPIC hypothetical protein NP_829872.1 1171560 R 227941 CDS NP_829873.1 29840767 1218700 1173237..1173386 1 NC_003361.3 hypothetical protein 1173386 1218700 CCA01012 Chlamydophila caviae GPIC hypothetical protein NP_829873.1 1173237 D 227941 CDS NP_829874.1 29839221 1217679 675..1415 1 NC_004720.1 similar to PIR:H39999, GB:L04791, SP:Q03468, and PID:182181; identified by sequence similarity; putative; virulence protein pGP6-D 1415 1217679 CCAA00001 Chlamydophila caviae GPIC virulence protein pGP6-D NP_829874.1 675 D 227941 CDS NP_829875.1 29839222 1217680 1638..2561 1 NC_004720.1 similar to SP:P10561, GB:X64318, GB:U26173, GB:S79880, PID:1237118, and PID:30956; identified by sequence similarity; putative; virulence plasmid integrase pGP7-D 2561 1217680 CCAA00002 Chlamydophila caviae GPIC virulence plasmid integrase pGP7-D NP_829875.1 1638 D 227941 CDS NP_829876.1 29839223 1217681 complement(2622..3629) 1 NC_004720.1 identified by match to PFAM protein family HMM PF00589; virulence plasmid integrase pGP8-D 3629 1217681 CCAA00003 Chlamydophila caviae GPIC virulence plasmid integrase pGP8-D NP_829876.1 2622 R 227941 CDS NP_829877.1 29839224 1217682 3733..5109 1 NC_004720.1 similar to SP:P10555; identified by sequence similarity; putative; virulence plasmid replicative DNA helicase pGP1-D 5109 1217682 CCAA00004 Chlamydophila caviae GPIC virulence plasmid replicative DNA helicase pGP1-D NP_829877.1 3733 D 227941 CDS NP_829878.1 29839225 1217683 5103..6146 1 NC_004720.1 similar to GB:M60502, GB:M24355, GB:M96943, GB:M60500, GB:L01089, GB:M60494, GB:M60499, GB:M60501, GB:M60503, GB:M60495, GB:L01090, SP:P20930, and PID:190394; identified by sequence similarity; putative; virulence protein pGP2-D 6146 1217683 CCAA00005 Chlamydophila caviae GPIC virulence protein pGP2-D NP_829878.1 5103 D 227941 CDS NP_829879.1 29839226 1217684 6201..6995 1 NC_004720.1 similar to SP:P10557, GB:X52947, GB:M65188, SP:P17302, PID:181209, and PID:29917; identified by sequence similarity; putative; virulence protein pGP3-D 6995 1217684 CCAA00006 Chlamydophila caviae GPIC virulence protein pGP3-D NP_829879.1 6201 D 227941 CDS NP_829880.1 29839227 1217685 7093..7401 1 NC_004720.1 similar to GP:1124830, GB:X06869, SP:P08736, PID:157401, and PID:7915; identified by sequence similarity; putative; virulence protein pGP4-D 7401 1217685 CCAA00007 Chlamydophila caviae GPIC virulence protein pGP4-D NP_829880.1 7093 D 227941 CDS