-- dump date 20140619_040257 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 227941000001 SEQ_END SEQ_END NC_003361.3 1173390 1173390 DR NC_003361.3; contig end 1173390..1173390 Chlamydophila caviae GPIC 227941000002 SEQ_END SEQ_END NC_004720.1 7966 7966 DR NC_004720.1; contig end 7966..7966 Chlamydophila caviae GPIC NP_828876.1 CDS hemB NC_003361.3 57 1052 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 57..1052 Chlamydophila caviae GPIC 1217750 NP_828877.1 CDS nqrA NC_003361.3 1068 2480 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(1068..2480) Chlamydophila caviae GPIC 1217751 NP_828878.1 CDS CCA00003 NC_003361.3 2502 2936 R hypothetical protein complement(2502..2936) Chlamydophila caviae GPIC 1217752 NP_828879.1 CDS greA NC_003361.3 3048 5201 D contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation; transcript cleavage factor/unknown domain fusion protein 3048..5201 Chlamydophila caviae GPIC 1217753 NP_828880.1 CDS CCA00005 NC_003361.3 5353 6543 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 5353..6543 Chlamydophila caviae GPIC 1217754 NP_828881.1 CDS CCA00006 NC_003361.3 6839 7861 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 6839..7861 Chlamydophila caviae GPIC 1217755 NP_828882.1 CDS recB NC_003361.3 7821 10958 R identified by match to TIGR protein family HMM TIGR01866; exodeoxyribonuclease V subunit beta complement(7821..10958) Chlamydophila caviae GPIC 1217756 NP_828883.1 CDS recC NC_003361.3 10945 14010 R similar to GB:L25079, SP:P42822, and PID:529423; identified by sequence similarity; exodeoxyribonuclease V subunit gamma complement(10945..14010) Chlamydophila caviae GPIC 1217757 NP_828884.1 CDS CCA00009 NC_003361.3 14009 15721 D identified by match to PFAM protein family HMM PF02405; efflux protein 14009..15721 Chlamydophila caviae GPIC 1217758 NP_828885.1 CDS CCA00010 NC_003361.3 15743 16738 R similar to SP:P13128, GB:X15127, and GB:X60035; identified by sequence similarity; hypothetical protein complement(15743..16738) Chlamydophila caviae GPIC 1217759 NP_828886.1 CDS rpsD NC_003361.3 16965 17594 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 16965..17594 Chlamydophila caviae GPIC 1217760 NP_828887.1 CDS nfo NC_003361.3 17659 18528 R Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV complement(17659..18528) Chlamydophila caviae GPIC 1217761 NP_828888.1 CDS CCA00013 NC_003361.3 18594 20237 D similar to GP:7190941; identified by sequence similarity; hypothetical protein 18594..20237 Chlamydophila caviae GPIC 1217762 NP_828889.1 CDS CCA00014 NC_003361.3 20346 21614 D similar to SP:P14916, GB:X17079, PID:149010, PID:43634, PID:1567116, PID:2313154, SP:P14916, GB:X17079, PID:149010, PID:43634, PID:1567116, and PID:2313154; identified by sequence similarity; hypothetical protein 20346..21614 Chlamydophila caviae GPIC 1217763 NP_828890.1 CDS CCA00015 NC_003361.3 21725 23635 D similar to SP:P14916, GB:X17079, PID:149010, PID:43634, PID:1567116, PID:2313154, SP:P14916, GB:X17079, PID:149010, PID:43634, PID:1567116, and PID:2313154; identified by sequence similarity; hypothetical protein 21725..23635 Chlamydophila caviae GPIC 1217764 NP_828891.1 CDS CCA00016 NC_003361.3 23820 26432 R similar to SP:Q03523, GB:Z25865, and GB:Z15056; identified by sequence similarity; hypothetical protein complement(23820..26432) Chlamydophila caviae GPIC 1217765 NP_828892.1 CDS CCA00017 NC_003361.3 26634 29150 D similar to GP:8979098; identified by sequence similarity; hypothetical protein 26634..29150 Chlamydophila caviae GPIC 1217686 NP_828893.1 CDS CCA00018 NC_003361.3 29189 29419 D similar to SP:Q03523, GB:Z25865, and GB:Z15056; identified by sequence similarity; hypothetical protein 29189..29419 Chlamydophila caviae GPIC 1217687 NP_828894.1 CDS CCA00019 NC_003361.3 29416 30138 R similar to SP:Q03523, GB:Z25865, and GB:Z15056; identified by sequence similarity; ABC transporter ATP-binding protein complement(29416..30138) Chlamydophila caviae GPIC 1217688 NP_828895.1 CDS CCA00020 NC_003361.3 30144 30629 R similar to GB:D26185, SP:P23261, GB:M58592, PID:143664, PID:467338, and GB:AL009126; identified by sequence similarity; hypothetical protein complement(30144..30629) Chlamydophila caviae GPIC 1217689 NP_828896.1 CDS kdsA NC_003361.3 30626 31435 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(30626..31435) Chlamydophila caviae GPIC 1217690 NP_828897.1 CDS CCA00022 NC_003361.3 31875 32111 R similar to GB:L07795, and PID:148862; identified by sequence similarity; hypothetical protein complement(31875..32111) Chlamydophila caviae GPIC 1217691 NP_828898.1 CDS CCA00024 NC_003361.3 33445 33753 R hypothetical protein complement(33445..33753) Chlamydophila caviae GPIC 1217693 NP_828899.1 CDS CCA00025 NC_003361.3 33755 34048 R hypothetical protein complement(33755..34048) Chlamydophila caviae GPIC 1217694 NP_828900.1 CDS CCA00026 NC_003361.3 34161 35600 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(34161..35600) Chlamydophila caviae GPIC 1217695 NP_828901.1 CDS CCA00027 NC_003361.3 35604 37412 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(35604..37412) Chlamydophila caviae GPIC 1217696 NP_828902.1 CDS hemA NC_003361.3 37967 38983 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 37967..38983 Chlamydophila caviae GPIC 1217697 NP_828903.1 CDS CCA00029 NC_003361.3 39330 39734 D identified by match to PFAM protein family HMM PF02639; hypothetical protein 39330..39734 Chlamydophila caviae GPIC 1217698 NP_828904.1 CDS CCA00030 NC_003361.3 39754 42231 D identified by match to PFAM protein family HMM PF04203; FHA domain-containing protein 39754..42231 Chlamydophila caviae GPIC 1217699 NP_828905.1 CDS CCA00031 NC_003361.3 42278 42529 D hypothetical protein 42278..42529 Chlamydophila caviae GPIC 1217700 NP_828906.1 CDS CCA00032 NC_003361.3 42553 42813 D hypothetical protein 42553..42813 Chlamydophila caviae GPIC 1217701 NP_828907.1 CDS CCA00033 NC_003361.3 42832 43281 D hypothetical protein 42832..43281 Chlamydophila caviae GPIC 1217702 NP_828908.1 CDS CCA00034 NC_003361.3 43325 43993 D hypothetical protein 43325..43993 Chlamydophila caviae GPIC 1217703 NP_828909.1 CDS sctN NC_003361.3 43995 45323 D similar to GB:Z33880, and PID:535939; identified by sequence similarity; type III secretion system ATPase 43995..45323 Chlamydophila caviae GPIC 1217704 NP_828910.1 CDS CCA00036 NC_003361.3 45344 45862 D similar to GB:Z33880, and PID:535939; identified by sequence similarity; hypothetical protein 45344..45862 Chlamydophila caviae GPIC 1217705 NP_828911.1 CDS CCA00037 NC_003361.3 45853 46701 D identified by match to PFAM protein family HMM PF02563; hypothetical protein 45853..46701 Chlamydophila caviae GPIC 1217706 NP_828912.1 CDS sctQ NC_003361.3 46714 47829 D identified by match to PFAM protein family HMM PF01052; type III secretion system protein 46714..47829 Chlamydophila caviae GPIC 1217707 NP_828913.1 CDS pkn5 NC_003361.3 47847 49352 D identified by match to PFAM protein family HMM PF02958; serine/threonine-protein kinase 47847..49352 Chlamydophila caviae GPIC 1217708 NP_828914.1 CDS sctC NC_003361.3 49349 52078 D identified by match to PFAM protein family HMM PF02484; type III secretion protein SctC 49349..52078 Chlamydophila caviae GPIC 1217709 NP_828915.1 CDS CCA00041 NC_003361.3 52707 53783 R identified by match to PFAM protein family HMM PF04122; ATP:guanido phosphotransferase complement(52707..53783) Chlamydophila caviae GPIC 1217710 NP_828916.1 CDS CCA00042 NC_003361.3 53767 54285 R identified by match to PFAM protein family HMM PF02151; hypothetical protein complement(53767..54285) Chlamydophila caviae GPIC 1217711 NP_828917.1 CDS frr NC_003361.3 54691 55233 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(54691..55233) Chlamydophila caviae GPIC 1217712 NP_828918.1 CDS pyrH NC_003361.3 55235 55957 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(55235..55957) Chlamydophila caviae GPIC 1217713 NP_828919.1 CDS tsf NC_003361.3 55973 56821 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(55973..56821) Chlamydophila caviae GPIC 1217714 NP_828920.1 CDS rpsB NC_003361.3 56821 57651 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(56821..57651) Chlamydophila caviae GPIC 1217715 NP_828921.1 CDS ompA NC_003361.3 58028 59197 R similar to PIR:A60109; identified by sequence similarity; major outer membrane protein, porin complement(58028..59197) Chlamydophila caviae GPIC 1217716 NP_828922.1 CDS pbp2 NC_003361.3 59801 63076 D similar to GB:S85353, PID:246437, GB:J02938, GB:U13680, GB:X15954, GB:X15957, SP:P07864, PID:187074, PID:307120, and PID:535360; identified by sequence similarity; PBP2-transglycosylase/transpeptidase 59801..63076 Chlamydophila caviae GPIC 1217717 NP_828923.1 CDS CCA00049 NC_003361.3 63144 64151 D similar to GB:D28770, PID:523232, PID:523234, and PID:2335043; identified by sequence similarity; type III secretion chaperone 63144..64151 Chlamydophila caviae GPIC 1217718 NP_828924.1 CDS CCA00050 NC_003361.3 64506 65960 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase 64506..65960 Chlamydophila caviae GPIC 1217719 NP_828925.1 CDS CCA00051 NC_003361.3 65964 66731 D similar to GB:D28770, PID:523232, PID:523234, and PID:2335043; identified by sequence similarity; ABC transporter ATP-binding protein 65964..66731 Chlamydophila caviae GPIC 1217720 NP_828926.1 CDS CCA00052 NC_003361.3 66733 68007 D identified by match to PFAM protein family HMM PF01458; hypothetical protein 66733..68007 Chlamydophila caviae GPIC 1217721 NP_828927.1 CDS b1680 NC_003361.3 67997 69217 D similar to GB:X77864, PID:951038, and PID:1333728; identified by sequence similarity; class V aminotransferase 67997..69217 Chlamydophila caviae GPIC 1217722 NP_828928.1 CDS CCA00054 NC_003361.3 69220 69999 R similar to GB:X77864, PID:951038, and PID:1333728; identified by sequence similarity; hypothetical protein complement(69220..69999) Chlamydophila caviae GPIC 1217723 NP_828929.1 CDS CCA00055 NC_003361.3 70193 70846 R similar to GB:X77864, PID:951038, and PID:1333728; identified by sequence similarity; hypothetical protein complement(70193..70846) Chlamydophila caviae GPIC 1217724 NP_828930.1 CDS parB NC_003361.3 71087 71920 D similar to GB:X77864, PID:951038, and PID:1333728; identified by sequence similarity; ParB family chromosome partioning protein 71087..71920 Chlamydophila caviae GPIC 1217725 NP_828931.1 CDS dppF NC_003361.3 71959 72927 R similar to GB:M21161, SP:P13421, and PID:152864; identified by sequence similarity; peptide ABC transporter ATP-binding protein complement(71959..72927) Chlamydophila caviae GPIC 1217726 NP_828932.1 CDS CCA00058 NC_003361.3 72920 73882 R identified by match to TIGR protein family HMM TIGR01842; peptide ABC transporter ATP-binding protein complement(72920..73882) Chlamydophila caviae GPIC 1217727 NP_828933.1 CDS CCA00059 NC_003361.3 73936 74610 D similar to GB:M21161, SP:P13421, and PID:152864; identified by sequence similarity; hypothetical protein 73936..74610 Chlamydophila caviae GPIC 1217728 NP_828934.1 CDS CCA00060 NC_003361.3 74617 75897 D similar to GB:M21161, SP:P13421, and PID:152864; identified by sequence similarity; phosphate permease 74617..75897 Chlamydophila caviae GPIC 1217729 NP_828935.1 CDS pgk NC_003361.3 75935 77146 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 75935..77146 Chlamydophila caviae GPIC 1217730 NP_828936.1 CDS CCA00062 NC_003361.3 77599 78990 D similar to GB:M88334, SP:P25526, PID:147901, GB:U00096, PID:1789015, GB:M88334, SP:P25526, PID:147901, GB:U00096, and PID:1789015; identified by sequence similarity; hypothetical protein 77599..78990 Chlamydophila caviae GPIC 1217731 NP_828937.1 CDS CCA00063 NC_003361.3 79009 80226 D similar to GB:M88334, SP:P25526, PID:147901, GB:U00096, and PID:1789015; identified by sequence similarity; hypothetical protein 79009..80226 Chlamydophila caviae GPIC 1217732 NP_828938.1 CDS CCA00064 NC_003361.3 80322 81476 D similar to GB:M88334, SP:P25526, PID:147901, GB:U00096, and PID:1789015; identified by sequence similarity; hypothetical protein 80322..81476 Chlamydophila caviae GPIC 1217733 NP_828939.1 CDS CCA00065 NC_003361.3 81600 82715 D identified by match to TIGR protein family HMM TIGR00563; Nol1/Nop2/Sun family protein 81600..82715 Chlamydophila caviae GPIC 1217734 NP_828940.1 CDS CCA00066 NC_003361.3 82721 83110 R hypothetical protein complement(82721..83110) Chlamydophila caviae GPIC 1217735 NP_828941.1 CDS CCA00067 NC_003361.3 83161 84462 R similar to GB:M57961, and PID:149570; identified by sequence similarity; D-alanyl-D-alanine carboxypeptidase complement(83161..84462) Chlamydophila caviae GPIC 1217736 NP_828942.1 CDS CCA00068 NC_003361.3 84573 84995 D similar to GB:M57961, and PID:149570; identified by sequence similarity; hypothetical protein 84573..84995 Chlamydophila caviae GPIC 1217737 NP_828943.1 CDS CCA00069 NC_003361.3 84982 85440 R identified by match to PFAM protein family HMM PF02518; rsbW protein complement(84982..85440) Chlamydophila caviae GPIC 1217738 NP_828944.1 CDS CCA00070 NC_003361.3 85409 86008 R similar to GB:L13940, PID:295432, and SP:P54297; identified by sequence similarity; hypothetical protein complement(85409..86008) Chlamydophila caviae GPIC 1217739 NP_828945.1 CDS CCA00071 NC_003361.3 86025 86981 R similar to GB:L13940, PID:295432, and SP:P54297; identified by sequence similarity; hypothetical protein complement(86025..86981) Chlamydophila caviae GPIC 1217740 NP_828946.1 CDS CCA00072 NC_003361.3 87134 88018 D hypothetical protein 87134..88018 Chlamydophila caviae GPIC 1217741 NP_828947.1 CDS dnaE NC_003361.3 88015 91743 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(88015..91743) Chlamydophila caviae GPIC 1217742 NP_828948.1 CDS uhpC NC_003361.3 91769 93136 R similar to SP:P09836; identified by sequence similarity; sugar phosphate sensor protein UhpC complement(91769..93136) Chlamydophila caviae GPIC 1217743 NP_828949.1 CDS CCA00075 NC_003361.3 93368 93586 D hypothetical protein 93368..93586 Chlamydophila caviae GPIC 1217744 NP_828950.1 CDS hisS NC_003361.3 93655 94947 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 93655..94947 Chlamydophila caviae GPIC 1217745 NP_828951.1 CDS aspS NC_003361.3 94922 96676 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 94922..96676 Chlamydophila caviae GPIC 1217746 NP_828952.1 CDS mip NC_003361.3 96752 97519 D similar to GB:U08377, and PID:508231; identified by sequence similarity; peptidyl-prolyl cis-trans isomerase Mip 96752..97519 Chlamydophila caviae GPIC 1217747 NP_828953.1 CDS CCA00079 NC_003361.3 97516 97986 D similar to GB:X78992, SP:P47974, PID:509778, and PID:984509; identified by sequence similarity; RNA methyltransferase 97516..97986 Chlamydophila caviae GPIC 1217748 NP_828954.1 CDS trx NC_003361.3 97983 98291 R identified by match to TIGR protein family HMM TIGR00411; thioredoxin complement(97983..98291) Chlamydophila caviae GPIC 1217749 NP_828955.1 CDS CCA00081 NC_003361.3 98417 98515 D hypothetical protein 98417..98515 Chlamydophila caviae GPIC 1217766 NP_828956.1 CDS CCA00082 NC_003361.3 98701 98856 D hypothetical protein 98701..98856 Chlamydophila caviae GPIC 1217767 NP_828957.1 CDS CCA00083 NC_003361.3 99311 100027 D similar to GB:M34239, SP:P33119, GB:M80338, PID:144973, PID:144977, GB:M34239, SP:P33119, GB:M80338, PID:144973, and PID:144977; identified by sequence similarity; hypothetical protein 99311..100027 Chlamydophila caviae GPIC 1217768 NP_828958.1 CDS CCA00084 NC_003361.3 100006 100467 D similar to GB:M34239, SP:P33119, GB:M80338, PID:144973, PID:144977, GB:M34239, SP:P33119, GB:M80338, PID:144973, and PID:144977; identified by sequence similarity; hypothetical protein 100006..100467 Chlamydophila caviae GPIC 1217769 NP_828959.1 CDS dnaQ-1 NC_003361.3 100477 101226 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 100477..101226 Chlamydophila caviae GPIC 1217770 NP_828960.1 CDS CCA00086 NC_003361.3 101387 101857 D similar to GB:L05176, SP:Q02540, and PID:151181; identified by sequence similarity; cytosolic acyl-CoA thioester hydrolase 101387..101857 Chlamydophila caviae GPIC 1217771 NP_828961.1 CDS lnt NC_003361.3 101865 103490 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 101865..103490 Chlamydophila caviae GPIC 1217772 NP_828962.1 CDS lpxC NC_003361.3 103505 104362 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 103505..104362 Chlamydophila caviae GPIC 1217773 NP_828963.1 CDS fabZ NC_003361.3 104377 104841 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 104377..104841 Chlamydophila caviae GPIC 1217774 NP_828964.1 CDS lpxA NC_003361.3 104851 105690 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 104851..105690 Chlamydophila caviae GPIC 1217775 NP_828965.1 CDS fmt NC_003361.3 105677 106642 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 105677..106642 Chlamydophila caviae GPIC 1217776 NP_828966.1 CDS CCA00092 NC_003361.3 106758 107732 D similar to GB:X57326, and PID:48151; identified by sequence similarity; hypothetical protein 106758..107732 Chlamydophila caviae GPIC 1217777 NP_828967.1 CDS rplC NC_003361.3 108028 108693 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 108028..108693 Chlamydophila caviae GPIC 1217778 NP_828968.1 CDS rplD NC_003361.3 108710 109384 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 108710..109384 Chlamydophila caviae GPIC 1217779 NP_828969.1 CDS rplW NC_003361.3 109401 109736 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 109401..109736 Chlamydophila caviae GPIC 1217780 NP_828970.1 CDS rplB NC_003361.3 109758 110612 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 109758..110612 Chlamydophila caviae GPIC 1217781 NP_828971.1 CDS rpsS NC_003361.3 110618 110884 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 110618..110884 Chlamydophila caviae GPIC 1217782 NP_828972.1 CDS rplV NC_003361.3 110903 111238 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 110903..111238 Chlamydophila caviae GPIC 1217783 NP_828973.1 CDS rpsC NC_003361.3 111247 111918 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 111247..111918 Chlamydophila caviae GPIC 1217784 NP_828974.1 CDS rplP NC_003361.3 111945 112361 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 111945..112361 Chlamydophila caviae GPIC 1217785 NP_828975.1 CDS rpmC NC_003361.3 112367 112585 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 112367..112585 Chlamydophila caviae GPIC 1217786 NP_828976.1 CDS rpsQ NC_003361.3 112578 112829 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 112578..112829 Chlamydophila caviae GPIC 1217787 NP_828977.1 CDS rplN NC_003361.3 112864 113232 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 112864..113232 Chlamydophila caviae GPIC 1217788 NP_828978.1 CDS rplX NC_003361.3 113247 113588 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 113247..113588 Chlamydophila caviae GPIC 1217789 NP_828979.1 CDS rplE NC_003361.3 113590 114132 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 113590..114132 Chlamydophila caviae GPIC 1217790 NP_828980.1 CDS rpsH NC_003361.3 114151 114552 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 114151..114552 Chlamydophila caviae GPIC 1217791 NP_828981.1 CDS rplF NC_003361.3 114584 115135 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 114584..115135 Chlamydophila caviae GPIC 1217792 NP_828982.1 CDS rplR NC_003361.3 115158 115529 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 115158..115529 Chlamydophila caviae GPIC 1217793 NP_828983.1 CDS rpsE NC_003361.3 115545 116042 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 115545..116042 Chlamydophila caviae GPIC 1217794 NP_828984.1 CDS rplO NC_003361.3 116035 116469 D late assembly protein; 50S ribosomal protein L15 116035..116469 Chlamydophila caviae GPIC 1217795 NP_828985.1 CDS secY NC_003361.3 116494 117867 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 116494..117867 Chlamydophila caviae GPIC 1217796 NP_828986.1 CDS rpsM NC_003361.3 117923 118291 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 117923..118291 Chlamydophila caviae GPIC 1217797 NP_828987.1 CDS rpsK NC_003361.3 118312 118710 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 118312..118710 Chlamydophila caviae GPIC 1217798 NP_828988.1 CDS rpoA NC_003361.3 118680 119861 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 118680..119861 Chlamydophila caviae GPIC 1217799 NP_828989.1 CDS rplQ NC_003361.3 119870 120298 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 119870..120298 Chlamydophila caviae GPIC 1217800 NP_828990.1 CDS gap NC_003361.3 120337 121344 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 120337..121344 Chlamydophila caviae GPIC 1217801 NP_828991.1 CDS CCA00117 NC_003361.3 121357 122199 D similar to GB:L14017, and PID:295162; identified by sequence similarity; hypothetical protein 121357..122199 Chlamydophila caviae GPIC 1217802 NP_828992.1 CDS CCA00118 NC_003361.3 122709 123674 D similar to GB:L14017, and PID:295162; identified by sequence similarity; hypothetical protein 122709..123674 Chlamydophila caviae GPIC 1217803 NP_828993.1 CDS ruvC NC_003361.3 123780 124286 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 123780..124286 Chlamydophila caviae GPIC 1217804 NP_828994.1 CDS ruvA NC_003361.3 124286 124909 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 124286..124909 Chlamydophila caviae GPIC 1217805 NP_828995.1 CDS ndk NC_003361.3 124974 125399 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 124974..125399 Chlamydophila caviae GPIC 1217806 NP_828996.1 CDS CCA00122 NC_003361.3 125413 126117 R similar to SP:P32099, GB:X69957, SP:P43148, and PID:396259; identified by sequence similarity; lipoate-protein ligase A complement(125413..126117) Chlamydophila caviae GPIC 1217807 NP_828997.1 CDS gidA NC_003361.3 126104 127939 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(126104..127939) Chlamydophila caviae GPIC 1217808 NP_828998.1 CDS dnaB NC_003361.3 128334 129752 R unwinds double stranded DNA; replicative DNA helicase complement(128334..129752) Chlamydophila caviae GPIC 1217809 NP_828999.1 CDS CCA00125 NC_003361.3 130414 130920 D similar to GB:D21270, and PID:600252; identified by sequence similarity; CDP-alcohol phosphatidyltransferase 130414..130920 Chlamydophila caviae GPIC 1217810 NP_829000.1 CDS tlc-1 NC_003361.3 131156 132796 D similar to GB:D21270, and PID:600252; identified by sequence similarity; ADP, ATP carrier protein 131156..132796 Chlamydophila caviae GPIC 1217811 NP_829001.1 CDS CCA00127 NC_003361.3 132894 133892 D similar to GB:D21270, and PID:600252; identified by sequence similarity; endopeptidase IV 132894..133892 Chlamydophila caviae GPIC 1217812 NP_829002.1 CDS polA NC_003361.3 133923 136532 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 133923..136532 Chlamydophila caviae GPIC 1217813 NP_829003.1 CDS coaE NC_003361.3 136526 137134 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 136526..137134 Chlamydophila caviae GPIC 1217814 NP_829004.1 CDS rho NC_003361.3 137131 138525 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 137131..138525 Chlamydophila caviae GPIC 1217815 NP_829005.1 CDS CCA00131 NC_003361.3 138785 139045 R similar to GB:M25260, SP:P26778, and PID:304172; identified by sequence similarity; hypothetical protein complement(138785..139045) Chlamydophila caviae GPIC 1217816 NP_829006.1 CDS pyrE NC_003361.3 139107 139727 D catalyzes the formation of orotidine monophosphate from 5-phosphoribosyl-1-pyrophosphate and orotate; orotate phosphoribosyltransferase 139107..139727 Chlamydophila caviae GPIC 1217817 NP_829007.1 CDS glgC NC_003361.3 139864 141192 D similar to GB:M17643, SP:P10728, PID:143614, PID:1303999, and GB:AL009126; identified by sequence similarity; glucose-1-phosphate adenylyltransferase 139864..141192 Chlamydophila caviae GPIC 1217818 NP_829008.1 CDS CCA00134 NC_003361.3 141307 142050 D identified by match to PFAM protein family HMM PF00149; hypothetical protein 141307..142050 Chlamydophila caviae GPIC 1217819 NP_829009.1 CDS CCA00135 NC_003361.3 142047 142616 D similar to GP:7190800; identified by sequence similarity; hypothetical protein 142047..142616 Chlamydophila caviae GPIC 1217820 NP_829010.1 CDS CCA00136 NC_003361.3 142809 143561 D similar to GB:M87483, SP:Q02000, PID:149518, GB:J04088, SP:P11388, and PID:292830; identified by sequence similarity; amino acid-binding protein 142809..143561 Chlamydophila caviae GPIC 1217821 NP_829011.1 CDS hemH NC_003361.3 143566 144522 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(143566..144522) Chlamydophila caviae GPIC 1217822 NP_829012.1 CDS CCA00138 NC_003361.3 144619 145626 D similar to GB:M87483, SP:Q02000, and PID:149518; identified by sequence similarity; hypothetical protein 144619..145626 Chlamydophila caviae GPIC 1217823 NP_829013.1 CDS CCA00139 NC_003361.3 145681 146022 D similar to GB:M87483, SP:Q02000, and PID:149518; identified by sequence similarity; hypothetical protein 145681..146022 Chlamydophila caviae GPIC 1217824 NP_829014.1 CDS CCA00140 NC_003361.3 146094 146300 D hypothetical protein 146094..146300 Chlamydophila caviae GPIC 1217825 NP_829015.1 CDS CCA00141 NC_003361.3 146811 146975 D hypothetical protein 146811..146975 Chlamydophila caviae GPIC 1217826 NP_829016.1 CDS CCA00142 NC_003361.3 147733 149850 D similar to SP:P00808, GB:X05798, and GB:V00093; identified by sequence similarity; peptide ABC transporter substrate-binding protein 147733..149850 Chlamydophila caviae GPIC 1217827 NP_829017.1 CDS CCA00143 NC_003361.3 149832 151313 D similar to SP:P00808, GB:X05798, and GB:V00093; identified by sequence similarity; peptide ABC transporter permease 149832..151313 Chlamydophila caviae GPIC 1217828 NP_829018.1 CDS CCA00144 NC_003361.3 151318 153051 D similar to SP:P00808, GB:X05798, and GB:V00093; identified by sequence similarity; peptide ABC transporter permease 151318..153051 Chlamydophila caviae GPIC 1217829 NP_829019.1 CDS ada NC_003361.3 153048 153575 R identified by match to PFAM protein family HMM PF01035; DNA methyltransferase complement(153048..153575) Chlamydophila caviae GPIC 1217830 NP_829020.1 CDS CCA00146 NC_003361.3 153590 154561 R hypothetical protein complement(153590..154561) Chlamydophila caviae GPIC 1217831 NP_829021.1 CDS pheT NC_003361.3 154561 156942 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(154561..156942) Chlamydophila caviae GPIC 1217832 NP_829022.1 CDS CCA00148 NC_003361.3 157050 158141 D similar to GB:M22916, GB:L10505, SP:P39790, PID:143210, PID:143702, and GB:AL009126; identified by sequence similarity; LysM domain-containing protein 157050..158141 Chlamydophila caviae GPIC 1217833 NP_829023.1 CDS CCA00149 NC_003361.3 158065 158376 R identified by match to TIGR protein family HMM TIGR00278; hypothetical protein complement(158065..158376) Chlamydophila caviae GPIC 1217834 NP_829024.1 CDS CCA00150 NC_003361.3 158366 159160 R similar to GP:7190783, and GP:7190783; identified by sequence similarity; hypothetical protein complement(158366..159160) Chlamydophila caviae GPIC 1217835 NP_829025.1 CDS CCA00151 NC_003361.3 159440 160030 D hypothetical protein 159440..160030 Chlamydophila caviae GPIC 1217836 NP_829026.1 CDS recO NC_003361.3 160022 160729 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(160022..160729) Chlamydophila caviae GPIC 1217837 NP_829027.1 CDS CCA00153 NC_003361.3 160734 161309 R hypothetical protein complement(160734..161309) Chlamydophila caviae GPIC 1217838 NP_829028.1 CDS CCA00154 NC_003361.3 161263 161946 R identified by match to PFAM protein family HMM PF02482; hypothetical protein complement(161263..161946) Chlamydophila caviae GPIC 1217839 NP_829029.1 CDS CCA00155 NC_003361.3 162248 163408 R identified by match to PFAM protein family HMM PF02889; Fis family transcriptional regulator complement(162248..163408) Chlamydophila caviae GPIC 1217840 NP_829030.1 CDS CCA00156 NC_003361.3 163591 166611 D identified by match to PFAM protein family HMM PF02486; hypothetical protein 163591..166611 Chlamydophila caviae GPIC 1217841 NP_829031.1 CDS CCA00157 NC_003361.3 166621 167679 R identified by match to PFAM protein family HMM PF02518; sensor histidine kinase complement(166621..167679) Chlamydophila caviae GPIC 1217842 NP_829032.1 CDS CCA00158 NC_003361.3 167660 167986 R identified by match to PFAM protein family HMM PF03902; hypothetical protein complement(167660..167986) Chlamydophila caviae GPIC 1217843 NP_829033.1 CDS CCA00159 NC_003361.3 168215 168922 R hypothetical protein complement(168215..168922) Chlamydophila caviae GPIC 1217844 NP_829034.1 CDS CCA00160 NC_003361.3 169049 169741 D identified by match to TIGR protein family HMM TIGR01548; HAD family hydrolase 169049..169741 Chlamydophila caviae GPIC 1217845 NP_829035.1 CDS ispD NC_003361.3 170487 171131 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(170487..171131) Chlamydophila caviae GPIC 1217847 NP_829036.1 CDS CCA00163 NC_003361.3 171115 172089 R similar to GB:L10328, SP:P04846, GB:M12163, PID:146649, PID:290510, GB:U00096, PID:1790093, GB:L10328, SP:P04846, GB:M12163, PID:146649, PID:290510, GB:U00096, and PID:1790093; identified by sequence similarity; hypothetical protein complement(171115..172089) Chlamydophila caviae GPIC 1217848 NP_829037.1 CDS CCA00164 NC_003361.3 172161 172424 R similar to GB:L10328, SP:P04846, GB:M12163, PID:146649, PID:290510, GB:U00096, and PID:1790093; identified by sequence similarity; BAF60b domain-containing protein complement(172161..172424) Chlamydophila caviae GPIC 1217849 NP_829038.1 CDS CCA00165 NC_003361.3 172424 172555 D hypothetical protein 172424..172555 Chlamydophila caviae GPIC 1217850 NP_829039.1 CDS prfB NC_003361.3 172781 173794 D recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 172781..173794 Chlamydophila caviae GPIC 1217851 NP_829040.1 CDS yhhY NC_003361.3 173791 174303 D similar to GB:L25079, SP:P42822, and PID:529423; identified by sequence similarity; acetyltransferase 173791..174303 Chlamydophila caviae GPIC 1217852 NP_829041.1 CDS CCA00168 NC_003361.3 174344 174898 D similar to GB:L25079, SP:P42822, PID:529423, GB:L25079, SP:P42822, and PID:529423; identified by sequence similarity; hypothetical protein 174344..174898 Chlamydophila caviae GPIC 1217853 NP_829042.1 CDS CCA00169 NC_003361.3 174882 175598 D similar to GP:7190771, and GP:7190771; identified by sequence similarity; hypothetical protein 174882..175598 Chlamydophila caviae GPIC 1217854 NP_829043.1 CDS CCA00170 NC_003361.3 175636 178278 R similar to GB:L25079, SP:P42822, and PID:529423; identified by sequence similarity; hypothetical protein complement(175636..178278) Chlamydophila caviae GPIC 1217855 NP_829044.1 CDS murA NC_003361.3 178511 179845 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 178511..179845 Chlamydophila caviae GPIC 1217856 NP_829045.1 CDS argS NC_003361.3 179848 181542 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(179848..181542) Chlamydophila caviae GPIC 1217857 NP_829046.1 CDS CCA00173 NC_003361.3 181542 182189 R similar to SP:P14916, GB:X17079, PID:149010, PID:43634, PID:1567116, and PID:2313154; identified by sequence similarity; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(181542..182189) Chlamydophila caviae GPIC 1217858 NP_829047.1 CDS cmk NC_003361.3 182186 182836 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(182186..182836) Chlamydophila caviae GPIC 1217859 NP_829048.1 CDS CCA00175 NC_003361.3 182833 183753 R similar to SP:Q9Z7Y6; identified by sequence similarity; phosphatidate cytidylyltransferase complement(182833..183753) Chlamydophila caviae GPIC 1217860 NP_829049.1 CDS uppS NC_003361.3 183756 184508 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(183756..184508) Chlamydophila caviae GPIC 1217861 NP_829050.1 CDS CCA00177 NC_003361.3 185126 186229 D similar to SP:Q03523, GB:Z25865, and GB:Z15056; identified by sequence similarity; hypothetical protein 185126..186229 Chlamydophila caviae GPIC 1217862 NP_829051.1 CDS CCA00178 NC_003361.3 186476 190690 D part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; in these organisms there is an unknown N-terminal domain; bifunctional preprotein translocase subunit SecD/SecF 186476..190690 Chlamydophila caviae GPIC 1217863 NP_829052.1 CDS recJ NC_003361.3 190778 192550 D similar to GP:3063673; identified by sequence similarity; single-stranded-DNA-specific exonuclease RecJ 190778..192550 Chlamydophila caviae GPIC 1217864 NP_829053.1 CDS CCA00180 NC_003361.3 192991 194145 D similar to GP:1783378, and GP:1783378; identified by sequence similarity; hypothetical protein 192991..194145 Chlamydophila caviae GPIC 1217865 NP_829054.1 CDS CCA00181 NC_003361.3 194760 195305 D similar to SP:P94661, and SP:P94661; identified by sequence similarity; DNA binding domain-containing protein 194760..195305 Chlamydophila caviae GPIC 1217866 NP_829055.1 CDS gltX NC_003361.3 195577 197094 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 195577..197094 Chlamydophila caviae GPIC 1217867 NP_829056.1 CDS CCA00183 NC_003361.3 197137 197325 R similar to GB:L07795, and PID:148862; identified by sequence similarity; hypothetical protein complement(197137..197325) Chlamydophila caviae GPIC 1217868 NP_829057.1 CDS omcA NC_003361.3 197747 198013 D similar to GB:X79980, and PID:510454; identified by sequence similarity; small CRP; small cysteine-rich protein; OmcA 197747..198013 Chlamydophila caviae GPIC 1217869 NP_829058.1 CDS omcB NC_003361.3 198178 199854 D similar to GB:X79980, and PID:510454; identified by sequence similarity; OmcB; 60 kDa outer membrane protein 198178..199854 Chlamydophila caviae GPIC 1217870 NP_829059.1 CDS srp NC_003361.3 200065 200547 D similar to GB:M81087, SP:P41171, and PID:154675; identified by sequence similarity; hypothetical protein 200065..200547 Chlamydophila caviae GPIC 1217871 NP_829060.1 CDS CCA00187 NC_003361.3 200600 202555 R identified by match to PFAM protein family HMM PF02692; tail-specific protease complement(200600..202555) Chlamydophila caviae GPIC 1217872 NP_829061.1 CDS CCA00188 NC_003361.3 202683 202961 R hypothetical protein complement(202683..202961) Chlamydophila caviae GPIC 1217873 NP_829062.1 CDS CCA00189 NC_003361.3 203065 204015 D hypothetical protein 203065..204015 Chlamydophila caviae GPIC 1217874 NP_829063.1 CDS rpsL NC_003361.3 204212 204583 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 204212..204583 Chlamydophila caviae GPIC 1217875 NP_829064.1 CDS rpsG NC_003361.3 204627 205100 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 204627..205100 Chlamydophila caviae GPIC 1217876 NP_829065.1 CDS fusA NC_003361.3 205142 207226 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 205142..207226 Chlamydophila caviae GPIC 1217877 NP_829066.1 CDS rpsJ NC_003361.3 207234 207551 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 207234..207551 Chlamydophila caviae GPIC 1217878 NP_829067.1 CDS CCA00194 NC_003361.3 207563 208618 D similar to SP:P38038; identified by sequence similarity; oxidoreductase 207563..208618 Chlamydophila caviae GPIC 1217879 NP_829068.1 CDS ispF NC_003361.3 208615 209145 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(208615..209145) Chlamydophila caviae GPIC 1217880 NP_829069.1 CDS CCA00196 NC_003361.3 209465 209917 D similar to GB:X05678, SP:P07788, GB:X07512, PID:39855, PID:39857, PID:1708638, GB:AL009126, GB:X05678, SP:P07788, GB:X07512, PID:39855, PID:39857, PID:1708638, and GB:AL009126; identified by sequence similarity; hypothetical protein 209465..209917 Chlamydophila caviae GPIC 1217881 NP_829070.1 CDS rplU NC_003361.3 210216 210536 D identified by match to PFAM protein family HMM PF00829; 50S ribosomal protein L21 210216..210536 Chlamydophila caviae GPIC 1217882 NP_829071.1 CDS rpmA NC_003361.3 210564 210812 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 210564..210812 Chlamydophila caviae GPIC 1217883 NP_829072.1 CDS obgE NC_003361.3 210929 211936 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 210929..211936 Chlamydophila caviae GPIC 1217884 NP_829073.1 CDS CCA00200 NC_003361.3 211834 212727 R identified by match to PFAM protein family HMM PF02653; metal ABC transporter permease complement(211834..212727) Chlamydophila caviae GPIC 1217885 NP_829074.1 CDS CCA00201 NC_003361.3 212724 213443 R identified by match to TIGR protein family HMM TIGR01186; ABC transporter ATP-binding protein complement(212724..213443) Chlamydophila caviae GPIC 1217886 NP_829075.1 CDS CCA00202 NC_003361.3 213440 214276 R identified by match to PFAM protein family HMM PF01297; ABC transporter periplasmic solute-binding protein complement(213440..214276) Chlamydophila caviae GPIC 1217887 NP_829076.1 CDS thiE NC_003361.3 214863 215501 D identified by match to PFAM protein family HMM PF02581; thiamine-phosphate pyrophosphorylase 214863..215501 Chlamydophila caviae GPIC 1217888 NP_829077.1 CDS thiM NC_003361.3 215495 216283 D similar to SP:P76423; identified by sequence similarity; hydroxyethylthiazole kinase 215495..216283 Chlamydophila caviae GPIC 1217889 NP_829078.1 CDS CCA00205 NC_003361.3 216409 221796 R identified by match to PFAM protein family HMM PF02415; hypothetical protein complement(216409..221796) Chlamydophila caviae GPIC 1217890 NP_829079.1 CDS CCA00206 NC_003361.3 221997 224801 R similar to GP:8978910; identified by sequence similarity; hypothetical protein complement(221997..224801) Chlamydophila caviae GPIC 1217891 NP_829080.1 CDS CCA00207 NC_003361.3 225024 225326 R hypothetical protein complement(225024..225326) Chlamydophila caviae GPIC 1217892 NP_829081.1 CDS CCA00208 NC_003361.3 225351 225704 R hypothetical protein complement(225351..225704) Chlamydophila caviae GPIC 1217893 NP_829082.1 CDS CCA00209 NC_003361.3 225903 227258 R similar to GB:M16753, and PID:143529; identified by sequence similarity; sodium/alanine symporter family protein complement(225903..227258) Chlamydophila caviae GPIC 1217894 NP_829083.1 CDS lspA NC_003361.3 227329 227826 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(227329..227826) Chlamydophila caviae GPIC 1217895 NP_829084.1 CDS CCA00211 NC_003361.3 227832 228206 R identified by match to PFAM protein family HMM PF01258; transcriptional regulator complement(227832..228206) Chlamydophila caviae GPIC 1217896 NP_829085.1 CDS nrdR NC_003361.3 228237 228695 R similar to GB:M16753, PID:143529, GB:M16753, and PID:143529; identified by sequence similarity; transcriptional regulator NrdR complement(228237..228695) Chlamydophila caviae GPIC 1217897 NP_829086.1 CDS ribE NC_003361.3 228915 229520 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 228915..229520 Chlamydophila caviae GPIC 1217898 NP_829087.1 CDS CCA00214 NC_003361.3 229522 230346 D identified by match to PFAM protein family HMM PF03602; hypothetical protein 229522..230346 Chlamydophila caviae GPIC 1217899 NP_829088.1 CDS CCA00215 NC_003361.3 230334 231131 D identified by match to PFAM protein family HMM PF03236; spoU rRNA methylase 230334..231131 Chlamydophila caviae GPIC 1217900 NP_829089.1 CDS lpxK NC_003361.3 231383 232486 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 231383..232486 Chlamydophila caviae GPIC 1217901 NP_829090.1 CDS CCA00217 NC_003361.3 232490 233737 D identified by match to PFAM protein family HMM PF02447; sodium:dicarboxylate symporter family protein 232490..233737 Chlamydophila caviae GPIC 1217902 NP_829091.1 CDS CCA00218 NC_003361.3 233750 234922 D Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 233750..234922 Chlamydophila caviae GPIC 1217903 NP_829092.1 CDS CCA00219 NC_003361.3 234953 235942 D identified by match to PFAM protein family HMM PF00571; carbohydrate isomerase KpsF/GutQ family protein 234953..235942 Chlamydophila caviae GPIC 1217904 NP_829093.1 CDS CCA00220 NC_003361.3 236357 237121 R similar to GB:U02462, and PID:407294; identified by sequence similarity; hypothetical protein complement(236357..237121) Chlamydophila caviae GPIC 1217905 NP_829094.1 CDS CCA00221 NC_003361.3 237601 238695 R similar to GP:7189157, and GP:7189157; identified by sequence similarity; hypothetical protein complement(237601..238695) Chlamydophila caviae GPIC 1217906 NP_829095.1 CDS CCA00222 NC_003361.3 238767 239138 R similar to GB:U02462, PID:407294, GB:U02462, and PID:407294; identified by sequence similarity; hypothetical protein complement(238767..239138) Chlamydophila caviae GPIC 1217907 NP_829096.1 CDS hemD NC_003361.3 239193 239834 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(239193..239834) Chlamydophila caviae GPIC 1217908 NP_829097.1 CDS glyA NC_003361.3 240163 241656 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 240163..241656 Chlamydophila caviae GPIC 1217909 NP_829098.1 CDS clpP-2 NC_003361.3 241676 242251 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 241676..242251 Chlamydophila caviae GPIC 1217910 NP_829099.1 CDS dapF NC_003361.3 242220 243002 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 242220..243002 Chlamydophila caviae GPIC 1217911 NP_829100.1 CDS CCA00227 NC_003361.3 243153 244142 D similar to SP:Q9Z834, GB:U09005, SP:P40608, and PID:507737; identified by sequence similarity; hypothetical protein 243153..244142 Chlamydophila caviae GPIC 1217912 NP_829101.1 CDS ubiE NC_003361.3 244148 244840 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(244148..244840) Chlamydophila caviae GPIC 1217913 NP_829102.1 CDS CCA00229 NC_003361.3 244815 245597 R similar to GB:L17309, SP:P39064, PID:348049, PID:2293223, and GB:AL009126; identified by sequence similarity; hypothetical protein complement(244815..245597) Chlamydophila caviae GPIC 1217914 NP_829103.1 CDS CCA00230 NC_003361.3 245570 246685 R identified by match to PFAM protein family HMM PF04055; hypothetical protein complement(245570..246685) Chlamydophila caviae GPIC 1217915 NP_829104.1 CDS CCA00231 NC_003361.3 246651 246872 R similar to GP:7189168, and GP:7189168; identified by sequence similarity; hypothetical protein complement(246651..246872) Chlamydophila caviae GPIC 1217916 NP_829105.1 CDS CCA00232 NC_003361.3 246903 248765 R similar to GB:L17309, SP:P39064, PID:348049, PID:2293223, and GB:AL009126; identified by sequence similarity; hypothetical protein complement(246903..248765) Chlamydophila caviae GPIC 1217917 NP_829106.1 CDS rsbV_1 NC_003361.3 248826 249176 R similar to GB:M63957, SP:P30720, PID:151242, and PID:999193; identified by sequence similarity; anti-anti-sigma factor complement(248826..249176) Chlamydophila caviae GPIC 1217918 NP_829107.1 CDS CCA00234 NC_003361.3 249292 250404 R similar to GB:M63957, SP:P30720, PID:151242, and PID:999193; identified by sequence similarity; hypothetical protein complement(249292..250404) Chlamydophila caviae GPIC 1217919 NP_829108.1 CDS CCA00235 NC_003361.3 250406 250882 R similar to GP:8978879, and GP:8978879; identified by sequence similarity; hypothetical protein complement(250406..250882) Chlamydophila caviae GPIC 1217920 NP_829109.1 CDS CCA00236 NC_003361.3 250902 251063 R similar to GP:7190735; identified by sequence similarity; hypothetical protein complement(250902..251063) Chlamydophila caviae GPIC 1217921 NP_829110.1 CDS CCA00237 NC_003361.3 251081 251242 R similar to GP:7190734, GB:X78435, SP:P48226, and PID:468559; identified by sequence similarity; hypothetical protein complement(251081..251242) Chlamydophila caviae GPIC 1217922 NP_829111.1 CDS CCA00238 NC_003361.3 251363 252025 R identified by match to PFAM protein family HMM PF04148; hypothetical protein complement(251363..252025) Chlamydophila caviae GPIC 1217923 NP_829112.1 CDS CCA00239 NC_003361.3 252211 252783 R similar to GP:8978875, and SP:Q39147; identified by sequence similarity; DNA-3-methyladenine glycosylase complement(252211..252783) Chlamydophila caviae GPIC 1217924 NP_829113.1 CDS CCA00240 NC_003361.3 252783 254819 R identified by match to PFAM protein family HMM PF02672; VacB/Rnb family exoribonuclease complement(252783..254819) Chlamydophila caviae GPIC 1217925 NP_829114.1 CDS dnaK NC_003361.3 254973 256967 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(254973..256967) Chlamydophila caviae GPIC 1217926 NP_829115.1 CDS grpE NC_003361.3 256998 257561 R similar to GB:M88112, and PID:155306; identified by sequence similarity; heat shock protein GrpE complement(256998..257561) Chlamydophila caviae GPIC 1217927 NP_829116.1 CDS hrcA NC_003361.3 257558 258718 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(257558..258718) Chlamydophila caviae GPIC 1217928 NP_829117.1 CDS proS NC_003361.3 258827 260560 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(258827..260560) Chlamydophila caviae GPIC 1217929 NP_829118.1 CDS CCA00245 NC_003361.3 260829 262043 D similar to GP:8978869; identified by sequence similarity; hypothetical protein 260829..262043 Chlamydophila caviae GPIC 1217930 NP_829119.1 CDS CCA00246 NC_003361.3 262152 263093 D similar to GB:M34239, SP:P33119, GB:M80338, PID:144973, PID:144977, GB:M34239, SP:P33119, GB:M80338, PID:144973, and PID:144977; identified by sequence similarity; hypothetical protein 262152..263093 Chlamydophila caviae GPIC 1217931 NP_829120.1 CDS CCA00247 NC_003361.3 263097 263375 D similar to GB:M34239, SP:P33119, GB:M80338, PID:144973, and PID:144977; identified by sequence similarity; hypothetical protein 263097..263375 Chlamydophila caviae GPIC 1217932 NP_829121.1 CDS CCA00248 NC_003361.3 263372 264415 R similar to GB:M34239, SP:P33119, GB:M80338, PID:144973, and PID:144977; identified by sequence similarity; hypothetical protein complement(263372..264415) Chlamydophila caviae GPIC 1217933 NP_829122.1 CDS CCA00249 NC_003361.3 264421 265608 R catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase complement(264421..265608) Chlamydophila caviae GPIC 1217934 NP_829123.1 CDS CCA00250 NC_003361.3 265877 266767 D identified by match to PFAM protein family HMM PF02987; hypothetical protein 265877..266767 Chlamydophila caviae GPIC 1217935 NP_829124.1 CDS CCA00251 NC_003361.3 266873 266971 D hypothetical protein 266873..266971 Chlamydophila caviae GPIC 1217936 NP_829125.1 CDS CCA00252 NC_003361.3 267287 268528 D hypothetical protein 267287..268528 Chlamydophila caviae GPIC 1217937 NP_829126.1 CDS CCA00253 NC_003361.3 268530 270614 R identified by match to PFAM protein family HMM PF02404; hypothetical protein complement(268530..270614) Chlamydophila caviae GPIC 1217938 NP_829127.1 CDS CCA00254 NC_003361.3 270755 271633 D similar to GP:7189191; identified by sequence similarity; hypothetical protein 270755..271633 Chlamydophila caviae GPIC 1217939 NP_829128.1 CDS CCA00255 NC_003361.3 271630 271962 D identified by match to PFAM protein family HMM PF04126; HIT family protein 271630..271962 Chlamydophila caviae GPIC 1217940 NP_829129.1 CDS CCA00256 NC_003361.3 271986 273623 D similar to GB:X57326, and PID:48151; identified by sequence similarity; hypothetical protein 271986..273623 Chlamydophila caviae GPIC 1217941 NP_829130.1 CDS CCA00257 NC_003361.3 273612 273875 R hypothetical protein complement(273612..273875) Chlamydophila caviae GPIC 1217942 NP_829131.1 CDS CCA00258 NC_003361.3 274233 275567 D similar to SP:P16256, GB:X57326, and PID:48151; identified by sequence similarity; sodium/pantothenate symporter 274233..275567 Chlamydophila caviae GPIC 1217943 NP_829132.1 CDS CCA00259 NC_003361.3 275668 275862 R similar to GB:X57326, PID:48151, GB:X57326, and PID:48151; identified by sequence similarity; hypothetical protein complement(275668..275862) Chlamydophila caviae GPIC 1217944 NP_829133.1 CDS aroG NC_003361.3 276074 276925 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase complement(276074..276925) Chlamydophila caviae GPIC 1217945 NP_829134.1 CDS CCA00261 NC_003361.3 276941 280075 R identified by match to PFAM protein family HMM PF02638; hypothetical protein complement(276941..280075) Chlamydophila caviae GPIC 1217946 NP_829135.1 CDS artJ NC_003361.3 280211 280990 D similar to GP:8978852; identified by sequence similarity; amino acid ABC transporter substrate-binding protein 280211..280990 Chlamydophila caviae GPIC 1217947 NP_829136.1 CDS CCA00263 NC_003361.3 281198 281902 D similar to GB:M99391, and PID:152478; identified by sequence similarity; hypothetical protein 281198..281902 Chlamydophila caviae GPIC 1217948 NP_829137.1 CDS CCA00264 NC_003361.3 281935 282768 D identified by match to PFAM protein family HMM PF00753; metal-dependent hydrolase 281935..282768 Chlamydophila caviae GPIC 1217949 NP_829138.1 CDS CCA00265 NC_003361.3 282778 284154 D similar to GP:7190694; identified by sequence similarity; GTP-binding protein HflX 282778..284154 Chlamydophila caviae GPIC 1217950 NP_829139.1 CDS CCA00266 NC_003361.3 284277 285542 D similar to GP:8978847; identified by sequence similarity; MiaB-like tRNA modifying enzyme 284277..285542 Chlamydophila caviae GPIC 1217951 NP_829140.1 CDS CCA00267 NC_003361.3 285539 286537 D identified by match to PFAM protein family HMM PF02814; hypothetical protein 285539..286537 Chlamydophila caviae GPIC 1217952 NP_829141.1 CDS glgB NC_003361.3 286550 288709 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 286550..288709 Chlamydophila caviae GPIC 1217953 NP_829142.1 CDS CCA00269 NC_003361.3 288857 290617 D similar to GB:X75069, SP:P41028, and PID:414099; identified by sequence similarity; hypothetical protein 288857..290617 Chlamydophila caviae GPIC 1217954 NP_829143.1 CDS CCA00270 NC_003361.3 290822 293167 D identified by match to PFAM protein family HMM PF03421; hypothetical protein 290822..293167 Chlamydophila caviae GPIC 1217955 NP_829144.1 CDS CCA00271 NC_003361.3 293211 296021 R identified by match to PFAM protein family HMM PF02415; hypothetical protein complement(293211..296021) Chlamydophila caviae GPIC 1217956 NP_829145.1 CDS CCA00272 NC_003361.3 296044 298869 R similar to GB:M19395, SP:P10655, GB:M28336, PID:143130, and PID:143134; identified by sequence similarity; hypothetical protein complement(296044..298869) Chlamydophila caviae GPIC 1217957 NP_829146.1 CDS CCA00273 NC_003361.3 299033 301825 R similar to GB:M19395, SP:P10655, GB:M28336, PID:143130, PID:143134, GB:X75069, SP:P41028, and PID:414099; identified by sequence similarity; hypothetical protein complement(299033..301825) Chlamydophila caviae GPIC 1217958 NP_829147.1 CDS CCA00274 NC_003361.3 301852 304635 R similar to GB:M19395, SP:P10655, GB:M28336, PID:143130, and PID:143134; identified by sequence similarity; hypothetical protein complement(301852..304635) Chlamydophila caviae GPIC 1217959 NP_829148.1 CDS CCA00275 NC_003361.3 304845 305981 R similar to GB:M19395, SP:P10655, GB:M28336, PID:143130, and PID:143134; identified by sequence similarity; hypothetical protein complement(304845..305981) Chlamydophila caviae GPIC 1217960 NP_829149.1 CDS CCA00276 NC_003361.3 306052 306147 D hypothetical protein 306052..306147 Chlamydophila caviae GPIC 1217961 NP_829150.1 CDS CCA00277 NC_003361.3 306379 309324 R similar to GB:X69957, SP:P43148, and PID:396259; identified by sequence similarity; hypothetical protein complement(306379..309324) Chlamydophila caviae GPIC 1217962 NP_829151.1 CDS CCA00278 NC_003361.3 309350 312385 R identified by match to PFAM protein family HMM PF02415; hypothetical protein complement(309350..312385) Chlamydophila caviae GPIC 1217963 NP_829152.1 CDS CCA00279 NC_003361.3 312634 315240 R similar to GB:M25260, SP:P26778, and PID:304172; identified by sequence similarity; hypothetical protein complement(312634..315240) Chlamydophila caviae GPIC 1217964 NP_829153.1 CDS CCA00280 NC_003361.3 315525 318056 R similar to GB:S70840, and PID:546752; identified by sequence similarity; hypothetical protein complement(315525..318056) Chlamydophila caviae GPIC 1217965 NP_829154.1 CDS CCA00281 NC_003361.3 318210 320741 R similar to GB:S70840, and PID:546752; identified by sequence similarity; hypothetical protein complement(318210..320741) Chlamydophila caviae GPIC 1217966 NP_829155.1 CDS CCA00282 NC_003361.3 320877 323705 R similar to GB:L09228, SP:P17616, GB:X51510, PID:40084, PID:410123, and GB:AL009126; identified by sequence similarity; hypothetical protein complement(320877..323705) Chlamydophila caviae GPIC 1217967 NP_829156.1 CDS CCA00283 NC_003361.3 323820 326420 R identified by match to PFAM protein family HMM PF02415; hypothetical protein complement(323820..326420) Chlamydophila caviae GPIC 1217968 NP_829157.1 CDS CCA00284 NC_003361.3 326543 329323 R similar to GB:S70840, PID:546752, GB:L09228, SP:P17616, GB:X51510, PID:40084, PID:410123, and GB:AL009126; identified by sequence similarity; hypothetical protein complement(326543..329323) Chlamydophila caviae GPIC 1217969 NP_829158.1 CDS CCA00286 NC_003361.3 333958 334233 R identified by match to PFAM protein family HMM PF04070; hypothetical protein complement(333958..334233) Chlamydophila caviae GPIC 1217971 NP_829159.1 CDS gatC NC_003361.3 334432 334734 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 334432..334734 Chlamydophila caviae GPIC 1217972 NP_829160.1 CDS gatB NC_003361.3 336230 337693 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 336230..337693 Chlamydophila caviae GPIC 1217974 NP_829161.1 CDS CCA00290 NC_003361.3 337820 338965 R similar to GB:M17643, SP:P10728, PID:143614, PID:1303999, and GB:AL009126; identified by sequence similarity; hypothetical protein complement(337820..338965) Chlamydophila caviae GPIC 1217975 NP_829162.1 CDS CCA00291 NC_003361.3 339246 339764 R similar to GP:8978814; identified by sequence similarity; hypothetical protein complement(339246..339764) Chlamydophila caviae GPIC 1217976 NP_829163.1 CDS CCA00292 NC_003361.3 339892 340842 R similar to GB:M87483, SP:Q02000, and PID:149518; identified by sequence similarity; hypothetical protein complement(339892..340842) Chlamydophila caviae GPIC 1217977 NP_829164.1 CDS rnhC NC_003361.3 341067 341969 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII complement(341067..341969) Chlamydophila caviae GPIC 1217978 NP_829165.1 CDS CCA00294 NC_003361.3 342124 342249 R hypothetical protein complement(342124..342249) Chlamydophila caviae GPIC 1217979 NP_829166.1 CDS CCA00295 NC_003361.3 342232 342663 D hypothetical protein 342232..342663 Chlamydophila caviae GPIC 1217980 NP_829167.1 CDS CCA00296 NC_003361.3 342733 344079 R similar to GB:M88112, PID:155306, GB:M88112, and PID:155306; identified by sequence similarity; hypothetical protein complement(342733..344079) Chlamydophila caviae GPIC 1217981 NP_829168.1 CDS CCA00297 NC_003361.3 344368 345705 R similar to GB:M88112, PID:155306, GB:M88112, and PID:155306; identified by sequence similarity; hypothetical protein complement(344368..345705) Chlamydophila caviae GPIC 1217982 NP_829169.1 CDS CCA00298 NC_003361.3 346028 347629 R similar to GB:M88112, PID:155306, GB:M88112, and PID:155306; identified by sequence similarity; hypothetical protein complement(346028..347629) Chlamydophila caviae GPIC 1217983 NP_829170.1 CDS CCA00299 NC_003361.3 348049 348915 D similar to GB:M88112, PID:155306, GB:M88112, and PID:155306; identified by sequence similarity; hypothetical protein 348049..348915 Chlamydophila caviae GPIC 1217984 NP_829171.1 CDS CCA00300 NC_003361.3 349093 349911 D similar to GB:M88112, PID:155306, GB:M88112, and PID:155306; identified by sequence similarity; hypothetical protein 349093..349911 Chlamydophila caviae GPIC 1217985 NP_829172.1 CDS CCA00301 NC_003361.3 350419 352521 D similar to GB:D14607, PID:540502, GB:D14607, and PID:540502; identified by sequence similarity; hypothetical protein 350419..352521 Chlamydophila caviae GPIC 1217986 NP_829173.1 CDS CCA00302 NC_003361.3 352633 353715 D similar to GB:D14607, and PID:540502; identified by sequence similarity; hypothetical protein 352633..353715 Chlamydophila caviae GPIC 1217987 NP_829174.1 CDS ksgA NC_003361.3 353724 354560 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 353724..354560 Chlamydophila caviae GPIC 1217988 NP_829175.1 CDS dxs NC_003361.3 355005 356939 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(355005..356939) Chlamydophila caviae GPIC 1217989 NP_829176.1 CDS CCA00305 NC_003361.3 356936 357187 R similar to GB:U14003, SP:P39303, PID:537036, GB:U00096, and PID:2367359; identified by sequence similarity; hypothetical protein complement(356936..357187) Chlamydophila caviae GPIC 1217990 NP_829177.1 CDS xseB NC_003361.3 357202 357429 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(357202..357429) Chlamydophila caviae GPIC 1217991 NP_829178.1 CDS xseA NC_003361.3 357433 359100 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(357433..359100) Chlamydophila caviae GPIC 1217992 NP_829179.1 CDS tpiA NC_003361.3 359233 359997 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 359233..359997 Chlamydophila caviae GPIC 1217993 NP_829180.1 CDS secG NC_003361.3 360287 360601 D similar to GB:M33815, SP:P21408, and PID:152860; identified by sequence similarity; preprotein translocase subunit SecG 360287..360601 Chlamydophila caviae GPIC 1217994 NP_829181.1 CDS CCA00310 NC_003361.3 360659 360805 D hypothetical protein 360659..360805 Chlamydophila caviae GPIC 1217995 NP_829182.1 CDS def NC_003361.3 360830 361390 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 360830..361390 Chlamydophila caviae GPIC 1217996 NP_829183.1 CDS CCA00312 NC_003361.3 361452 363548 R identified by match to PFAM protein family HMM PF03859; hypothetical protein complement(361452..363548) Chlamydophila caviae GPIC 1217997 NP_829184.1 CDS CCA00313 NC_003361.3 363559 365265 R similar to GB:X75568; identified by sequence similarity; hypothetical protein complement(363559..365265) Chlamydophila caviae GPIC 1217998 NP_829185.1 CDS maf NC_003361.3 365247 365837 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(365247..365837) Chlamydophila caviae GPIC 1217999 NP_829186.1 CDS CCA00315 NC_003361.3 365882 367507 R identified by match to PFAM protein family HMM PF02483; ABC transporter ATP-binding protein complement(365882..367507) Chlamydophila caviae GPIC 1218000 NP_829187.1 CDS xerC NC_003361.3 367524 368462 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(367524..368462) Chlamydophila caviae GPIC 1218001 NP_829188.1 CDS CCA00317 NC_003361.3 368505 369425 R member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(368505..369425) Chlamydophila caviae GPIC 1218002 NP_829189.1 CDS CCA00318 NC_003361.3 369529 370230 R hypothetical protein complement(369529..370230) Chlamydophila caviae GPIC 1218003 NP_829190.1 CDS lon NC_003361.3 370370 372826 R identified by match to PFAM protein family HMM PF02414; ATP-dependent protease La complement(370370..372826) Chlamydophila caviae GPIC 1218004 NP_829191.1 CDS CCA00320 NC_003361.3 372994 373128 D hypothetical protein 372994..373128 Chlamydophila caviae GPIC 1218005 NP_829192.1 CDS CCA00321 NC_003361.3 373479 374120 D similar to GP:7190660; identified by sequence similarity; hypothetical protein 373479..374120 Chlamydophila caviae GPIC 1218006 NP_829193.1 CDS rpsU NC_003361.3 374317 374493 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 374317..374493 Chlamydophila caviae GPIC 1218007 NP_829194.1 CDS dnaJ NC_003361.3 374523 375701 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 374523..375701 Chlamydophila caviae GPIC 1218008 NP_829195.1 CDS pdhA/pdhB NC_003361.3 375736 377772 D identified by match to PFAM protein family HMM PF02745; 2-oxoisovalerate dehydrogenase E1 375736..377772 Chlamydophila caviae GPIC 1218009 NP_829196.1 CDS CCA00325 NC_003361.3 377769 378806 R similar to GP:7189658, and GP:7189658; identified by sequence similarity; hypothetical protein complement(377769..378806) Chlamydophila caviae GPIC 1218010 NP_829197.1 CDS CCA00327 NC_003361.3 380447 381238 D similar to SP:P00800, GB:X76986, PID:441267, PID:512558, SP:P00800, GB:X76986, PID:441267, and PID:512558; identified by sequence similarity; hypothetical protein 380447..381238 Chlamydophila caviae GPIC 1218012 NP_829198.1 CDS ptsH NC_003361.3 381228 381566 D similar to SP:P00800, GB:X76986, PID:441267, and PID:512558; identified by sequence similarity; phosphocarrier protein HPr 381228..381566 Chlamydophila caviae GPIC 1218013 NP_829199.1 CDS ptsI NC_003361.3 381567 383267 D similar to SP:P00800, GB:X76986, PID:441267, and PID:512558; identified by sequence similarity; phosphoenolpyruvate-protein phosphotransferase 381567..383267 Chlamydophila caviae GPIC 1218014 NP_829200.1 CDS CCA00330 NC_003361.3 383264 383554 R similar to SP:P00800, GB:X76986, PID:441267, PID:512558, SP:P00800, GB:X76986, PID:441267, and PID:512558; identified by sequence similarity; hypothetical protein complement(383264..383554) Chlamydophila caviae GPIC 1218015 NP_829201.1 CDS dnaZ NC_003361.3 383557 384897 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(383557..384897) Chlamydophila caviae GPIC 1218016 NP_829202.1 CDS CCA00332 NC_003361.3 385236 385361 D hypothetical protein 385236..385361 Chlamydophila caviae GPIC 1218017 NP_829203.1 CDS CCA00333 NC_003361.3 385392 387488 D similar to GB:M82881, SP:P33385, PID:149647, GB:M82881, SP:P33385, and PID:149647; identified by sequence similarity; hypothetical protein 385392..387488 Chlamydophila caviae GPIC 1218018 NP_829204.1 CDS CCA00334 NC_003361.3 387507 387971 R identified by match to PFAM protein family HMM PF03675; hypothetical protein complement(387507..387971) Chlamydophila caviae GPIC 1218019 NP_829205.1 CDS CCA00335 NC_003361.3 388218 388655 R similar to GB:M82881, SP:P33385, PID:149647, GB:M82881, SP:P33385, and PID:149647; identified by sequence similarity; hypothetical protein complement(388218..388655) Chlamydophila caviae GPIC 1218020 NP_829206.1 CDS CCA00336 NC_003361.3 389048 389488 R hypothetical protein complement(389048..389488) Chlamydophila caviae GPIC 1218021 NP_829207.1 CDS CCA00337 NC_003361.3 389842 390294 R identified by match to PFAM protein family HMM PF03132; hypothetical protein complement(389842..390294) Chlamydophila caviae GPIC 1218022 NP_829208.1 CDS CCA00338 NC_003361.3 390676 391092 R hypothetical protein complement(390676..391092) Chlamydophila caviae GPIC 1218023 NP_829209.1 CDS CCA00339 NC_003361.3 391167 391631 R identified by match to PFAM protein family HMM PF04276; hypothetical protein complement(391167..391631) Chlamydophila caviae GPIC 1218024 NP_829210.1 CDS CCA00340 NC_003361.3 391760 392488 R transformation of prophobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(391760..392488) Chlamydophila caviae GPIC 1218025 NP_829211.1 CDS radA NC_003361.3 392466 393827 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(392466..393827) Chlamydophila caviae GPIC 1218026 NP_829212.1 CDS rnc NC_003361.3 393793 394506 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(393793..394506) Chlamydophila caviae GPIC 1218027 NP_829213.1 CDS CCA00343 NC_003361.3 394626 395090 D similar to GB:L01055, SP:P31715, GB:S65052, PID:295156, and PID:410007; identified by sequence similarity; hypothetical protein 394626..395090 Chlamydophila caviae GPIC 1218028 NP_829214.1 CDS CCA00344 NC_003361.3 395188 396990 D similar to GB:S61968, GB:X76688, and SP:P46738; identified by sequence similarity; phosphoglucomutase/phosphomannomutase 395188..396990 Chlamydophila caviae GPIC 1218029 NP_829215.1 CDS sod NC_003361.3 397180 397797 D similar to GB:S61968, GB:X76688, and SP:P46738; identified by sequence similarity; superoxide dismutase 397180..397797 Chlamydophila caviae GPIC 1218030 NP_829216.1 CDS accD NC_003361.3 397874 398800 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 397874..398800 Chlamydophila caviae GPIC 1218031 NP_829217.1 CDS dut NC_003361.3 398843 399286 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 398843..399286 Chlamydophila caviae GPIC 1218032 NP_829218.1 CDS ptsN_1 NC_003361.3 399288 399764 D similar to GB:S61968, GB:X76688, and SP:P46738; identified by sequence similarity; PTS system,IIA component 399288..399764 Chlamydophila caviae GPIC 1218033 NP_829219.1 CDS CCA00349 NC_003361.3 399770 400450 D identified by match to TIGR protein family HMM TIGR01764; DNA binding protein/PTS system, IIA component 399770..400450 Chlamydophila caviae GPIC 1218034 NP_829220.1 CDS CCA00350 NC_003361.3 400549 401805 D similar to GB:X05678, SP:P07788, GB:X07512, PID:39855, PID:39857, PID:1708638, and GB:AL009126; identified by sequence similarity; hypothetical protein 400549..401805 Chlamydophila caviae GPIC 1218035 NP_829221.1 CDS CCA00351 NC_003361.3 401993 403744 D identified by match to PFAM protein family HMM PF02683; hypothetical protein 401993..403744 Chlamydophila caviae GPIC 1218036 NP_829222.1 CDS CCA00352 NC_003361.3 403764 404357 R similar to GB:M87483, SP:Q02000, PID:149518, GB:M87483, SP:Q02000, and PID:149518; identified by sequence similarity; hypothetical protein complement(403764..404357) Chlamydophila caviae GPIC 1218037 NP_829223.1 CDS CCA00353 NC_003361.3 404369 404929 R similar to GB:D10483, SP:P31553, GB:X73904, PID:216465, PID:563861, GB:U00096, PID:1786224, GB:D10483, SP:P31553, GB:X73904, PID:216465, PID:563861, GB:U00096, and PID:1786224; identified by sequence similarity; hypothetical protein complement(404369..404929) Chlamydophila caviae GPIC 1218038 NP_829224.1 CDS mnmA NC_003361.3 405034 406116 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 405034..406116 Chlamydophila caviae GPIC 1218039 NP_829225.1 CDS clpC NC_003361.3 406100 408640 R similar to GP:7189244; identified by sequence similarity; ATP-dependent Clp protease, ATP-binding subunit complement(406100..408640) Chlamydophila caviae GPIC 1218040 NP_829226.1 CDS CCA00356 NC_003361.3 408844 409560 D similar to GB:D10483, SP:P31553, GB:X73904, PID:216465, PID:563861, GB:U00096, PID:1786224, GB:D10483, SP:P31553, GB:X73904, PID:216465, PID:563861, GB:U00096, and PID:1786224; identified by sequence similarity; hypothetical protein 408844..409560 Chlamydophila caviae GPIC 1218041 NP_829227.1 CDS CCA00357 NC_003361.3 409557 410981 D similar to GP:7190598; identified by sequence similarity; phospholipase D 409557..410981 Chlamydophila caviae GPIC 1218042 NP_829228.1 CDS CCA00358 NC_003361.3 411111 413180 D similar to GP:8163246; identified by sequence similarity; hypothetical protein 411111..413180 Chlamydophila caviae GPIC 1218043 NP_829229.1 CDS CCA00359 NC_003361.3 413180 413521 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 413180..413521 Chlamydophila caviae GPIC 1218044 NP_829230.1 CDS CCA00360 NC_003361.3 413645 413938 D identified by match to PFAM protein family HMM PF03248; hypothetical protein 413645..413938 Chlamydophila caviae GPIC 1218045 NP_829231.1 CDS CCA00361 NC_003361.3 413960 414292 D identified by match to PFAM protein family HMM PF03376; hypothetical protein 413960..414292 Chlamydophila caviae GPIC 1218046 NP_829232.1 CDS nqrE NC_003361.3 414294 415088 R similar to SP:Q56589; identified by sequence similarity; Na(+)-translocating NADH-quinone reductase subunit E complement(414294..415088) Chlamydophila caviae GPIC 1218047 NP_829233.1 CDS nqrD NC_003361.3 415093 415734 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(415093..415734) Chlamydophila caviae GPIC 1218048 NP_829234.1 CDS nqrC NC_003361.3 415721 416680 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(415721..416680) Chlamydophila caviae GPIC 1218049 NP_829235.1 CDS nqrB NC_003361.3 416685 418196 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(416685..418196) Chlamydophila caviae GPIC 1218050 NP_829236.1 CDS CCA00367 NC_003361.3 418843 419433 R similar to GB:Z34287, SP:P39781, PID:498813, and GB:AL009126; identified by sequence similarity; hypothetical protein complement(418843..419433) Chlamydophila caviae GPIC 1218052 NP_829237.1 CDS dnaA NC_003361.3 419450 420802 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA complement(419450..420802) Chlamydophila caviae GPIC 1218053 NP_829238.1 CDS CCA00369 NC_003361.3 420818 420982 D hypothetical protein 420818..420982 Chlamydophila caviae GPIC 1218054 NP_829239.1 CDS CCA00370 NC_003361.3 420999 421430 R similar to GP:8163245; identified by sequence similarity; type III secretion chaperone complement(420999..421430) Chlamydophila caviae GPIC 1218055 NP_829240.1 CDS CCA00371 NC_003361.3 421434 421982 R similar to GB:M97296, SP:Q03417, and PID:155583; identified by sequence similarity; hypothetical protein complement(421434..421982) Chlamydophila caviae GPIC 1218056 NP_829241.1 CDS mraW NC_003361.3 422155 423048 D identified by match to PFAM protein family HMM PF03109; S-adenosyl-methyltransferase MraW 422155..423048 Chlamydophila caviae GPIC 1218057 NP_829242.1 CDS CCA00373 NC_003361.3 423048 423335 D similar to GP:7190583; identified by sequence similarity; hypothetical protein 423048..423335 Chlamydophila caviae GPIC 1218058 NP_829243.1 CDS pbp3 NC_003361.3 423322 425271 D similar to GB:M83673, and PID:151093; identified by sequence similarity; penicillin-binding protein 423322..425271 Chlamydophila caviae GPIC 1218059 NP_829244.1 CDS CCA00375 NC_003361.3 425274 425717 R similar to GB:S61968, GB:X76688, SP:P46738, GB:S61968, GB:X76688, and SP:P46738; identified by sequence similarity; hypothetical protein complement(425274..425717) Chlamydophila caviae GPIC 1218060 NP_829245.1 CDS murE NC_003361.3 426032 427483 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 426032..427483 Chlamydophila caviae GPIC 1218061 NP_829246.1 CDS CCA00377 NC_003361.3 427398 428195 D similar to GB:M37202, SP:P37716, and PID:141733; identified by sequence similarity; N-acetylmuramoyl-L-alanine amidase 427398..428195 Chlamydophila caviae GPIC 1218062 NP_829247.1 CDS CCA00378 NC_003361.3 428599 428901 D identified by match to TIGR protein family HMM TIGR00987; integration host factor beta-subunit 428599..428901 Chlamydophila caviae GPIC 1218063 NP_829248.1 CDS CCA00379 NC_003361.3 429029 430210 D similar to GB:M37202, SP:P37716, and PID:141733; identified by sequence similarity; hypothetical protein 429029..430210 Chlamydophila caviae GPIC 1218064 NP_829249.1 CDS accA NC_003361.3 430316 431290 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 430316..431290 Chlamydophila caviae GPIC 1218065 NP_829250.1 CDS CCA00381 NC_003361.3 431256 433217 D similar to GB:M37202, SP:P37716, and PID:141733; identified by sequence similarity; ABC transporter ATP-binding protein 431256..433217 Chlamydophila caviae GPIC 1218066 NP_829251.1 CDS CCA00382 NC_003361.3 433226 433879 R similar to GB:M90761, SP:Q02137, and PID:149432; identified by sequence similarity; hypothetical protein complement(433226..433879) Chlamydophila caviae GPIC 1218067 NP_829252.1 CDS CCA00383 NC_003361.3 433860 434633 R similar to GB:U09530, GB:Z35104, SP:P46359, PID:493076, and PID:510936; identified by sequence similarity; hypothetical protein complement(433860..434633) Chlamydophila caviae GPIC 1218068 NP_829253.1 CDS dnaQ-2 NC_003361.3 434630 435316 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(434630..435316) Chlamydophila caviae GPIC 1218069 NP_829254.1 CDS CCA00385 NC_003361.3 435331 435804 R similar to GB:Z35107, and PID:510938; identified by sequence similarity; hypothetical protein complement(435331..435804) Chlamydophila caviae GPIC 1218070 NP_829255.1 CDS CCA00386 NC_003361.3 435836 436342 R similar to GB:Z35107, and PID:510938; identified by sequence similarity; hypothetical protein complement(435836..436342) Chlamydophila caviae GPIC 1218071 NP_829256.1 CDS CCA00387 NC_003361.3 436707 437594 D similar to GB:Z35107, and PID:510938; identified by sequence similarity; HAD family phosphatase 436707..437594 Chlamydophila caviae GPIC 1218072 NP_829257.1 CDS fabI NC_003361.3 437581 438480 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase complement(437581..438480) Chlamydophila caviae GPIC 1218073 NP_829258.1 CDS CCA00389 NC_003361.3 438745 440925 D similar to GP:7190422, GB:M64978, and PID:150554; identified by sequence similarity; hypothetical protein 438745..440925 Chlamydophila caviae GPIC 1218074 NP_829259.1 CDS CCA00390 NC_003361.3 441052 443748 D identified by match to PFAM protein family HMM PF02952; hypothetical protein 441052..443748 Chlamydophila caviae GPIC 1218075 NP_829260.1 CDS mutY NC_003361.3 444619 445728 D similar to GB:Z29675, GB:Z35485, GB:Z35486, GB:Z35487, GB:Z35496, SP:P46360, PID:474835, PID:517232, PID:517234, PID:517236, and PID:517386; identified by sequence similarity; adenine glycosylase 444619..445728 Chlamydophila caviae GPIC 1218077 NP_829261.1 CDS CCA00393 NC_003361.3 445733 446119 D similar to GB:Z29675, GB:Z35485, GB:Z35486, GB:Z35487, GB:Z35496, SP:P46360, PID:474835, PID:517232, PID:517234, PID:517236, and PID:517386; identified by sequence similarity; nucleotide pyrophosphohydrolase 445733..446119 Chlamydophila caviae GPIC 1218078 NP_829262.1 CDS CCA00394 NC_003361.3 446303 447079 R similar to GB:Z29675, GB:Z35485, GB:Z35486, GB:Z35487, GB:Z35496, SP:P46360, PID:474835, PID:517232, PID:517234, PID:517236, and PID:517386; identified by sequence similarity; hypothetical protein complement(446303..447079) Chlamydophila caviae GPIC 1218079 NP_829263.1 CDS CCA00395 NC_003361.3 447083 447727 R similar to GB:L07795, and PID:148862; identified by sequence similarity; hypothetical protein complement(447083..447727) Chlamydophila caviae GPIC 1218080 NP_829264.1 CDS CCA00396 NC_003361.3 447932 448063 R similar to GP:7190581; identified by sequence similarity; hypothetical protein complement(447932..448063) Chlamydophila caviae GPIC 1218081 NP_829265.1 CDS CCA00397 NC_003361.3 448468 448833 R identified by match to PFAM protein family HMM PF04143; hypothetical protein complement(448468..448833) Chlamydophila caviae GPIC 1218082 NP_829266.1 CDS CCA00398 NC_003361.3 448899 450029 R identified by match to PFAM protein family HMM PF04143; hypothetical protein complement(448899..450029) Chlamydophila caviae GPIC 1218083 NP_829267.1 CDS CCA00399 NC_003361.3 450320 451069 D similar to GP:8978769; identified by sequence similarity; serine/threonine protein phosphatase 450320..451069 Chlamydophila caviae GPIC 1218084 NP_829268.1 CDS CCA00400 NC_003361.3 451093 452208 D similar to GB:L07795, and PID:148862; identified by sequence similarity; nifS protein 451093..452208 Chlamydophila caviae GPIC 1218085 NP_829269.1 CDS hly3 NC_003361.3 452211 453425 R identified by match to PFAM protein family HMM PF03471; hypothetical protein complement(452211..453425) Chlamydophila caviae GPIC 1218086 NP_829270.1 CDS tlyC_1 NC_003361.3 453418 454653 R similar to GP:8978766; identified by sequence similarity; hypothetical protein complement(453418..454653) Chlamydophila caviae GPIC 1218087 NP_829271.1 CDS CCA00403 NC_003361.3 454663 454992 R identified by match to PFAM protein family HMM PF01713; hypothetical protein complement(454663..454992) Chlamydophila caviae GPIC 1218088 NP_829272.1 CDS dcd NC_003361.3 455002 455574 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(455002..455574) Chlamydophila caviae GPIC 1218089 NP_829273.1 CDS CCA00405 NC_003361.3 455671 455826 R hypothetical protein complement(455671..455826) Chlamydophila caviae GPIC 1218090 NP_829274.1 CDS ruvB NC_003361.3 456177 457190 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 456177..457190 Chlamydophila caviae GPIC 1218091 NP_829275.1 CDS CCA00407 NC_003361.3 457187 458002 D hypothetical protein 457187..458002 Chlamydophila caviae GPIC 1218092 NP_829276.1 CDS CCA00408 NC_003361.3 457995 459983 R identified by match to PFAM protein family HMM PF02922; glycosyl hydrolase complement(457995..459983) Chlamydophila caviae GPIC 1218093 NP_829277.1 CDS CCA00409 NC_003361.3 460116 460622 D hypothetical protein 460116..460622 Chlamydophila caviae GPIC 1218094 NP_829278.1 CDS ssb NC_003361.3 461294 461779 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 461294..461779 Chlamydophila caviae GPIC 1218095 NP_829279.1 CDS pepA NC_003361.3 461817 463316 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 461817..463316 Chlamydophila caviae GPIC 1218096 NP_829280.1 CDS hctB NC_003361.3 463458 463916 D similar to GB:Z33880, and PID:535939; identified by sequence similarity; Hc2 nucleoprotein 463458..463916 Chlamydophila caviae GPIC 1218097 NP_829281.1 CDS CCA00413 NC_003361.3 464066 465001 D similar to GB:Z33880, and PID:535939; identified by sequence similarity; hypothetical protein 464066..465001 Chlamydophila caviae GPIC 1218098 NP_829282.1 CDS CCA00414 NC_003361.3 464998 465708 D similar to GP:7190360; identified by sequence similarity; tetrapyrrole methylase 464998..465708 Chlamydophila caviae GPIC 1218099 NP_829283.1 CDS CCA00415 NC_003361.3 465728 465961 R hypothetical protein complement(465728..465961) Chlamydophila caviae GPIC 1218100 NP_829284.1 CDS CCA00416 NC_003361.3 466367 467674 D similar to GP:7190361, and GP:7190361; identified by sequence similarity; hypothetical protein 466367..467674 Chlamydophila caviae GPIC 1218101 NP_829285.1 CDS CCA00417 NC_003361.3 467723 469258 R identified by match to PFAM protein family HMM PF03634; hypothetical protein complement(467723..469258) Chlamydophila caviae GPIC 1218102 NP_829286.1 CDS CCA00418 NC_003361.3 469320 470447 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(469320..470447) Chlamydophila caviae GPIC 1218103 NP_829287.1 CDS CCA00419 NC_003361.3 470437 470883 R hypothetical protein complement(470437..470883) Chlamydophila caviae GPIC 1218104 NP_829288.1 CDS sucA NC_003361.3 471038 473764 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 471038..473764 Chlamydophila caviae GPIC 1218105 NP_829289.1 CDS sucB NC_003361.3 473761 474858 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 473761..474858 Chlamydophila caviae GPIC 1218106 NP_829290.1 CDS CCA00422 NC_003361.3 474863 475603 R similar to GB:M16753, PID:143529, GB:M16753, and PID:143529; identified by sequence similarity; hypothetical protein complement(474863..475603) Chlamydophila caviae GPIC 1218107 NP_829291.1 CDS gcpE NC_003361.3 475619 477439 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-clclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; these proteins appear to consist of duplicate domains as compared to Escherichia coli IspG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(475619..477439) Chlamydophila caviae GPIC 1218108 NP_829292.1 CDS CCA00424 NC_003361.3 477772 478974 R hypothetical protein complement(477772..478974) Chlamydophila caviae GPIC 1218109 NP_829293.1 CDS CCA00425 NC_003361.3 479074 480048 R hypothetical protein complement(479074..480048) Chlamydophila caviae GPIC 1218110 NP_829294.1 CDS CCA00426 NC_003361.3 480422 481561 R identified by match to PFAM protein family HMM PF01661; hypothetical protein complement(480422..481561) Chlamydophila caviae GPIC 1218111 NP_829295.1 CDS fer4 NC_003361.3 481785 482060 R similar to GB:U02462, and PID:407294; identified by sequence similarity; ferredoxin complement(481785..482060) Chlamydophila caviae GPIC 1218112 NP_829296.1 CDS flhA NC_003361.3 482340 484097 D similar to GB:U02462, and PID:407294; identified by sequence similarity; type III secretion system protein 482340..484097 Chlamydophila caviae GPIC 1218113 NP_829297.1 CDS CCA00429 NC_003361.3 484199 484972 D expressed in response to temperature increase; may be involved in expression of genes involved in the developmental cycle of Chlamydia; RNA polymerase sigma factor sigma-28 484199..484972 Chlamydophila caviae GPIC 1218114 NP_829298.1 CDS CCA00430 NC_003361.3 484969 485247 R hypothetical protein complement(484969..485247) Chlamydophila caviae GPIC 1218115 NP_829299.1 CDS tyrS NC_003361.3 485409 486647 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 485409..486647 Chlamydophila caviae GPIC 1218116 NP_829300.1 CDS gnd NC_003361.3 486664 488109 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 486664..488109 Chlamydophila caviae GPIC 1218117 NP_829301.1 CDS lepA NC_003361.3 488331 490139 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(488331..490139) Chlamydophila caviae GPIC 1218118 NP_829302.1 CDS CCA00434 NC_003361.3 490384 491739 D similar to GP:7189329, and GP:7189329; identified by sequence similarity; hypothetical protein 490384..491739 Chlamydophila caviae GPIC 1218119 NP_829303.1 CDS tlc-2 NC_003361.3 491803 493404 R similar to GP:7190377; identified by sequence similarity; ADP, ATP carrier protein complement(491803..493404) Chlamydophila caviae GPIC 1218120 NP_829304.1 CDS CCA00436 NC_003361.3 493628 494131 R hypothetical protein complement(493628..494131) Chlamydophila caviae GPIC 1218121 NP_829305.1 CDS CCA00437 NC_003361.3 494620 495585 D similar to GB:M63957, SP:P30720, PID:151242, and PID:999193; identified by sequence similarity; ABC transporter periplasmic substrate-binding protein 494620..495585 Chlamydophila caviae GPIC 1218122 NP_829306.1 CDS CCA00438 NC_003361.3 495582 496361 D identified by match to TIGR protein family HMM TIGR01662; ABC transporter ATP-binding protein 495582..496361 Chlamydophila caviae GPIC 1218123 NP_829307.1 CDS CCA00439 NC_003361.3 496362 497711 D identified by match to PFAM protein family HMM PF02653; ABC transporter permease 496362..497711 Chlamydophila caviae GPIC 1218124 NP_829308.1 CDS CCA00440 NC_003361.3 497708 498691 D similar to GB:X78435, SP:P48226, and PID:468559; identified by sequence similarity; ABC transporter permease 497708..498691 Chlamydophila caviae GPIC 1218125 NP_829309.1 CDS dxr NC_003361.3 498732 499871 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 498732..499871 Chlamydophila caviae GPIC 1218126 NP_829310.1 CDS CCA00442 NC_003361.3 499884 501752 D similar to GB:X78435, SP:P48226, and PID:468559; identified by sequence similarity; zinc protease 499884..501752 Chlamydophila caviae GPIC 1218127 NP_829311.1 CDS CCA00443 NC_003361.3 501703 502683 R identified by match to PFAM protein family HMM PF02684; hypothetical protein complement(501703..502683) Chlamydophila caviae GPIC 1218128 NP_829312.1 CDS recF NC_003361.3 502792 503895 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(502792..503895) Chlamydophila caviae GPIC 1218129 NP_829313.1 CDS dnaN NC_003361.3 503895 504995 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(503895..504995) Chlamydophila caviae GPIC 1218130 NP_829314.1 CDS smpB NC_003361.3 505234 505686 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 505234..505686 Chlamydophila caviae GPIC 1218131 NP_829315.1 CDS apbE NC_003361.3 505667 506614 R identified by match to PFAM protein family HMM PF02424; thiamine biosynthesis lipoprotein complement(505667..506614) Chlamydophila caviae GPIC 1218132 NP_829316.1 CDS folD NC_003361.3 506584 507447 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(506584..507447) Chlamydophila caviae GPIC 1218133 NP_829317.1 CDS CCA00449 NC_003361.3 507438 507953 R similar to GP:7190393; identified by sequence similarity; hypothetical protein complement(507438..507953) Chlamydophila caviae GPIC 1218134 NP_829318.1 CDS ltuB NC_003361.3 508155 508445 D similar to GB:U14003, SP:P39303, PID:537036, GB:U00096, PID:2367359, GB:U14003, SP:P39303, PID:537036, GB:U00096, and PID:2367359; identified by sequence similarity; LtuB protein 508155..508445 Chlamydophila caviae GPIC 1218135 NP_829319.1 CDS CCA00451 NC_003361.3 508818 510557 D similar to GB:U14003, SP:P39303, PID:537036, GB:U00096, and PID:2367359; identified by sequence similarity; hypothetical protein 508818..510557 Chlamydophila caviae GPIC 1218136 NP_829320.1 CDS CCA00452 NC_003361.3 510568 511053 D hypothetical protein 510568..511053 Chlamydophila caviae GPIC 1218137 NP_829321.1 CDS CCA00453 NC_003361.3 511050 512105 R similar to GP:2444077; identified by sequence similarity; phospholipase D complement(511050..512105) Chlamydophila caviae GPIC 1218138 NP_829322.1 CDS CCA00454 NC_003361.3 512211 513956 R similar to SP:O34023, GB:D14607, and PID:540502; identified by sequence similarity; hypothetical protein complement(512211..513956) Chlamydophila caviae GPIC 1218139 NP_829323.1 CDS rpmB NC_003361.3 513975 514244 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(513975..514244) Chlamydophila caviae GPIC 1218140 NP_829324.1 CDS malQ NC_003361.3 514414 516006 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(514414..516006) Chlamydophila caviae GPIC 1218141 NP_829325.1 CDS sycE NC_003361.3 516063 516503 R similar to GP:2444074; identified by sequence similarity; type III secretion chaperone complement(516063..516503) Chlamydophila caviae GPIC 1218142 NP_829326.1 CDS copN NC_003361.3 516519 517712 R similar to GB:M63957, SP:P30718, GB:U17072, PID:151243, PID:999194, GB:M63957, SP:P30718, GB:U17072, PID:151243, and PID:999194; identified by sequence similarity; copN protein complement(516519..517712) Chlamydophila caviae GPIC 1218143 NP_829327.1 CDS sctV NC_003361.3 517743 519872 R similar to GB:L27528, SP:P38098, PID:440837, PID:451651, and PID:1750385; identified by sequence similarity; type III secretion inner membrane protein SctV complement(517743..519872) Chlamydophila caviae GPIC 1218144 NP_829328.1 CDS CCA00460 NC_003361.3 519872 520954 R identified by match to PFAM protein family HMM PF02695; type III secretion system protein complement(519872..520954) Chlamydophila caviae GPIC 1218145 NP_829329.1 CDS CCA00461 NC_003361.3 521317 522411 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 521317..522411 Chlamydophila caviae GPIC 1218146 NP_829330.1 CDS ribF NC_003361.3 522389 523303 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(522389..523303) Chlamydophila caviae GPIC 1218147 NP_829331.1 CDS rbfA NC_003361.3 524035 524397 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(524035..524397) Chlamydophila caviae GPIC 1218149 NP_829332.1 CDS infB NC_003361.3 524404 527067 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(524404..527067) Chlamydophila caviae GPIC 1218150 NP_829333.1 CDS nusA NC_003361.3 527024 528328 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(527024..528328) Chlamydophila caviae GPIC 1218151 NP_829334.1 CDS rpsA NC_003361.3 528421 530166 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(528421..530166) Chlamydophila caviae GPIC 1218152 NP_829335.1 CDS trxB NC_003361.3 530335 531270 D similar to GB:L19685, and PID:404771; identified by sequence similarity; thioredoxin reductase 530335..531270 Chlamydophila caviae GPIC 1218153 NP_829336.1 CDS acpS NC_003361.3 531262 531630 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(531262..531630) Chlamydophila caviae GPIC 1218154 NP_829337.1 CDS CCA00470 NC_003361.3 531646 532092 R similar to SP:P11895, GB:M35124, SP:P16077, GB:X05813, GB:X13521, PID:14584, PID:147886, PID:148608, PID:42375, PID:42645, SP:P11895, GB:M35124, SP:P16077, GB:X05813, GB:X13521, PID:14584, PID:147886, PID:148608, PID:42375, and PID:42645; identified by sequence similarity; hypothetical protein complement(531646..532092) Chlamydophila caviae GPIC 1218155 NP_829338.1 CDS lgt NC_003361.3 532162 533052 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 532162..533052 Chlamydophila caviae GPIC 1218156 NP_829339.1 CDS CCA00472 NC_003361.3 533148 535532 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 533148..535532 Chlamydophila caviae GPIC 1218157 NP_829340.1 CDS dnaA NC_003361.3 535600 536982 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 535600..536982 Chlamydophila caviae GPIC 1218158 NP_829341.1 CDS CCA00474 NC_003361.3 536979 537374 R identified by match to PFAM protein family HMM PF03376; hypothetical protein complement(536979..537374) Chlamydophila caviae GPIC 1218159 NP_829342.1 CDS glgP NC_003361.3 537530 539980 D similar to GB:M17642, SP:P11469, PID:142968, and GB:AL009126; identified by sequence similarity; glycogen phosphorylase 537530..539980 Chlamydophila caviae GPIC 1218160 NP_829343.1 CDS pdhC NC_003361.3 540054 541340 R Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(540054..541340) Chlamydophila caviae GPIC 1218161 NP_829344.1 CDS pdhB NC_003361.3 541345 542331 R similar to GB:M17642, SP:P11469, PID:142968, and GB:AL009126; identified by sequence similarity; pyruvate dehydrogenase, E1 component subunit beta complement(541345..542331) Chlamydophila caviae GPIC 1218162 NP_829345.1 CDS pdhA NC_003361.3 542324 543349 R similar to GB:M17642, SP:P11469, PID:142968, and GB:AL009126; identified by sequence similarity; pyruvate dehydrogenase, E1 component subunit alpha complement(542324..543349) Chlamydophila caviae GPIC 1218163 NP_829346.1 CDS lpxD NC_003361.3 544549 545628 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(544549..545628) Chlamydophila caviae GPIC 1218165 NP_829347.1 CDS CCA00481 NC_003361.3 545656 546195 R identified by match to PFAM protein family HMM PF04102; cationic outer membrane protein OmpH complement(545656..546195) Chlamydophila caviae GPIC 1218166 NP_829348.1 CDS CCA00482 NC_003361.3 546304 548676 R identified by match to PFAM protein family HMM PF03072; hypothetical protein complement(546304..548676) Chlamydophila caviae GPIC 1218167 NP_829349.1 CDS recR NC_003361.3 548848 549450 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(548848..549450) Chlamydophila caviae GPIC 1218168 NP_829350.1 CDS fabH NC_003361.3 549571 550578 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 549571..550578 Chlamydophila caviae GPIC 1218169 NP_829351.1 CDS fabD NC_003361.3 550582 551508 D identified by match to PFAM protein family HMM PF03861; ACP S-malonyltransferase 550582..551508 Chlamydophila caviae GPIC 1218170 NP_829352.1 CDS fabG NC_003361.3 551513 552259 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 551513..552259 Chlamydophila caviae GPIC 1218171 NP_829353.1 CDS acpP NC_003361.3 552371 552604 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 552371..552604 Chlamydophila caviae GPIC 1218172 NP_829354.1 CDS CCA00488 NC_003361.3 552723 553142 R similar to GB:X69957, SP:P43148, and PID:396259; identified by sequence similarity; cyclic nucleotide-binding protein complement(552723..553142) Chlamydophila caviae GPIC 1218173 NP_829355.1 CDS CCA00489 NC_003361.3 553157 555934 R similar to GB:X69957, SP:P43148, and PID:396259; identified by sequence similarity; hypothetical protein complement(553157..555934) Chlamydophila caviae GPIC 1218174 NP_829356.1 CDS incC NC_003361.3 556036 556596 R similar to GB:D10208, SP:P49250, PID:216723, GB:D10208, SP:P49250, and PID:216723; identified by sequence similarity; inclusion membrane protein C complement(556036..556596) Chlamydophila caviae GPIC 1218175 NP_829357.1 CDS incB NC_003361.3 556633 557229 R similar to GB:D10208, SP:P49250, PID:216723, GB:D10208, SP:P49250, and PID:216723; identified by sequence similarity; inclusion membrane protein B complement(556633..557229) Chlamydophila caviae GPIC 1218176 NP_829358.1 CDS CCA00492 NC_003361.3 557315 558796 R similar to GB:D21270, and PID:600252; identified by sequence similarity; sodium-dependent transporter complement(557315..558796) Chlamydophila caviae GPIC 1218177 NP_829359.1 CDS aaaT NC_003361.3 558802 560022 R similar to GB:M88104, SP:P28617, PID:142447, GB:M88104, SP:P28617, and PID:142447; identified by sequence similarity; sodium:dicarboxylate symporter family protein complement(558802..560022) Chlamydophila caviae GPIC 1218178 NP_829360.1 CDS CCA00494 NC_003361.3 560127 561293 D similar to GB:M25260, SP:P26778, and PID:304172; identified by sequence similarity; hypothetical protein 560127..561293 Chlamydophila caviae GPIC 1218179 NP_829361.1 CDS CCA00495 NC_003361.3 561576 563708 D similar to GB:M25260, SP:P26778, PID:304172, GB:M25260, SP:P26778, and PID:304172; identified by sequence similarity; hypothetical protein 561576..563708 Chlamydophila caviae GPIC 1218180 NP_829362.1 CDS mgtE NC_003361.3 563735 565147 D identified by match to PFAM protein family HMM PF02466; magnesium transporter 563735..565147 Chlamydophila caviae GPIC 1218181 NP_829363.1 CDS CCA00497 NC_003361.3 565287 566702 D similar to GB:M25260, SP:P26778, PID:304172, GB:M25260, SP:P26778, and PID:304172; identified by sequence similarity; hypothetical protein 565287..566702 Chlamydophila caviae GPIC 1218182 NP_829364.1 CDS xasA NC_003361.3 566816 568216 R similar to GB:M17643, SP:P10728, PID:143614, PID:1303999, and GB:AL009126; identified by sequence similarity; amino acid antiporter complement(566816..568216) Chlamydophila caviae GPIC 1218183 NP_829365.1 CDS fbaB NC_003361.3 568234 569283 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase complement(568234..569283) Chlamydophila caviae GPIC 1218184 NP_829366.1 CDS CCA00500 NC_003361.3 569450 571327 D similar to GP:7190527, and GP:7190527; identified by sequence similarity; hypothetical protein 569450..571327 Chlamydophila caviae GPIC 1218185 NP_829367.1 CDS CCA00501 NC_003361.3 571514 572539 D similar to GB:M87483, SP:Q02000, and PID:149518; identified by sequence similarity; ABC transporter ATP-binding protein 571514..572539 Chlamydophila caviae GPIC 1218186 NP_829368.1 CDS CCA00502 NC_003361.3 572552 573217 D similar to GB:M87483, SP:Q02000, and PID:149518; identified by sequence similarity; ABC transporter permease 572552..573217 Chlamydophila caviae GPIC 1218187 NP_829369.1 CDS CCA00503 NC_003361.3 573214 574017 D similar to GB:M87483, SP:Q02000, and PID:149518; identified by sequence similarity; YaeC family lipoprotein 573214..574017 Chlamydophila caviae GPIC 1218188 NP_829370.1 CDS CCA00504 NC_003361.3 574069 574161 D hypothetical protein 574069..574161 Chlamydophila caviae GPIC 1218189 NP_829371.1 CDS CCA00505 NC_003361.3 574511 574861 D similar to GB:D10483, SP:P31553, GB:X73904, PID:216465, PID:563861, GB:U00096, and PID:1786224; identified by sequence similarity; hypothetical protein 574511..574861 Chlamydophila caviae GPIC 1218190 NP_829372.1 CDS gyrB NC_003361.3 574865 577285 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 574865..577285 Chlamydophila caviae GPIC 1218191 NP_829373.1 CDS gyrA NC_003361.3 577301 579793 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 577301..579793 Chlamydophila caviae GPIC 1218192 NP_829374.1 CDS tmk NC_003361.3 579805 580428 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 579805..580428 Chlamydophila caviae GPIC 1218193 NP_829375.1 CDS CCA00509 NC_003361.3 580419 581285 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 580419..581285 Chlamydophila caviae GPIC 1218194 NP_829376.1 CDS CCA00510 NC_003361.3 581282 582004 R identified by match to PFAM protein family HMM PF02230; serine esterase complement(581282..582004) Chlamydophila caviae GPIC 1218195 NP_829377.1 CDS CCA00511 NC_003361.3 582317 583174 D identified by match to PFAM protein family HMM PF01300; Sua5/YciO/YrdC family protein 582317..583174 Chlamydophila caviae GPIC 1218196 NP_829378.1 CDS CCA00512 NC_003361.3 583179 584153 D similar to GB:L06332, SP:P36913, and PID:148696; identified by sequence similarity; dipeptidase 583179..584153 Chlamydophila caviae GPIC 1218197 NP_829379.1 CDS CCA00513 NC_003361.3 584219 585340 R similar to SP:P35579; identified by sequence similarity; hypothetical protein complement(584219..585340) Chlamydophila caviae GPIC 1218198 NP_829380.1 CDS CCA00514 NC_003361.3 585596 586735 R identified by match to PFAM protein family HMM PF03334; hypothetical protein complement(585596..586735) Chlamydophila caviae GPIC 1218199 NP_829381.1 CDS ubiA NC_003361.3 587725 588615 D UbiA prenyltransferase catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 587725..588615 Chlamydophila caviae GPIC 1218201 NP_829382.1 CDS CCA00517 NC_003361.3 588631 589209 D similar to SP:P33751; identified by sequence similarity; aromatic acid decarboxylase 588631..589209 Chlamydophila caviae GPIC 1218202 NP_829383.1 CDS CCA00518 NC_003361.3 589206 590099 R similar to GB:Z34287, SP:P39781, PID:498813, and GB:AL009126; identified by sequence similarity; hypothetical protein complement(589206..590099) Chlamydophila caviae GPIC 1218203 NP_829384.1 CDS surE NC_003361.3 590502 591449 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(590502..591449) Chlamydophila caviae GPIC 1218204 NP_829385.1 CDS surE NC_003361.3 591691 592530 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(591691..592530) Chlamydophila caviae GPIC 1218205 NP_829386.1 CDS CCA00521 NC_003361.3 592594 593337 R similar to GB:M97296, SP:Q03417, PID:155583, GB:M97296, SP:Q03417, and PID:155583; identified by sequence similarity; hypothetical protein complement(592594..593337) Chlamydophila caviae GPIC 1218206 NP_829387.1 CDS CCA00522 NC_003361.3 593465 593950 D identified by match to PFAM protein family HMM PF02810; protein translocase subunit 593465..593950 Chlamydophila caviae GPIC 1218207 NP_829388.1 CDS CCA00523 NC_003361.3 594340 595182 D similar to GB:M83673, and PID:151093; identified by sequence similarity; hypothetical protein 594340..595182 Chlamydophila caviae GPIC 1218208 NP_829389.1 CDS CCA00524 NC_003361.3 595185 596048 D similar to GB:M58563, SP:P29720, PID:155067, GB:M58563, SP:P29720, and PID:155067; identified by sequence similarity; hypothetical protein 595185..596048 Chlamydophila caviae GPIC 1218209 NP_829390.1 CDS CCA00525 NC_003361.3 596055 596858 D similar to GB:M83673, and PID:151093; identified by sequence similarity; hypothetical protein 596055..596858 Chlamydophila caviae GPIC 1218210 NP_829391.1 CDS CCA00526 NC_003361.3 596890 598272 R identified by match to PFAM protein family HMM PF04055; MiaB-like tRNA modifying enzyme YliG complement(596890..598272) Chlamydophila caviae GPIC 1218211 NP_829392.1 CDS rpmG NC_003361.3 598372 598530 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 598372..598530 Chlamydophila caviae GPIC 1218212 NP_829393.1 CDS CCA00528 NC_003361.3 598579 600090 D similar to GB:U09530, GB:Z35104, SP:P46359, PID:493076, and PID:510936; identified by sequence similarity; permease 598579..600090 Chlamydophila caviae GPIC 1218213 NP_829394.1 CDS CCA00529 NC_003361.3 600093 600764 D similar to GB:U09530, GB:Z35104, SP:P46359, PID:493076, and PID:510936; identified by sequence similarity; ABC transporter ATP-binding protein 600093..600764 Chlamydophila caviae GPIC 1218214 NP_829395.1 CDS CCA00530 NC_003361.3 600767 602041 R identified by match to PFAM protein family HMM PF02673; hypothetical protein complement(600767..602041) Chlamydophila caviae GPIC 1218215 NP_829396.1 CDS CCA00531 NC_003361.3 602238 602387 R hypothetical protein complement(602238..602387) Chlamydophila caviae GPIC 1218216 NP_829397.1 CDS rplM NC_003361.3 602542 602994 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 602542..602994 Chlamydophila caviae GPIC 1218217 NP_829398.1 CDS rpsI NC_003361.3 603008 603412 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 603008..603412 Chlamydophila caviae GPIC 1218218 NP_829399.1 CDS CCA00534 NC_003361.3 603515 604366 R similar to GB:Z35107, and PID:510938; identified by sequence similarity; NLP/P60 family protein complement(603515..604366) Chlamydophila caviae GPIC 1218219 NP_829400.1 CDS adk NC_003361.3 604400 605044 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(604400..605044) Chlamydophila caviae GPIC 1218220 NP_829401.1 CDS CCA00536 NC_003361.3 605339 606463 D identified by match to PFAM protein family HMM PF02673; hypothetical protein 605339..606463 Chlamydophila caviae GPIC 1218221 NP_829402.1 CDS CCA00537 NC_003361.3 606518 606940 D similar to GB:Z35105, GB:Z35106, GB:Z38064, GB:Z38065, PID:510890, PID:510892, PID:557752, and PID:557754; identified by sequence similarity; hypothetical protein 606518..606940 Chlamydophila caviae GPIC 1218222 NP_829403.1 CDS CCA00538 NC_003361.3 607059 608180 D similar to GP:8978614, and GP:8978614; identified by sequence similarity; hypothetical protein 607059..608180 Chlamydophila caviae GPIC 1218223 NP_829404.1 CDS pgl NC_003361.3 608244 609020 R catalyzes the formation of 6-phospho-D-gluconate from 6-phospho-D-glucono-1,5-lactone; 6-phosphogluconolactonase complement(608244..609020) Chlamydophila caviae GPIC 1218224 NP_829405.1 CDS zwf NC_003361.3 609044 610579 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(609044..610579) Chlamydophila caviae GPIC 1218225 NP_829406.1 CDS CCA00541 NC_003361.3 610878 612464 R similar to GB:U09005, SP:P40608, and PID:507737; identified by sequence similarity; peptide ABC transporter substrate-binding protein complement(610878..612464) Chlamydophila caviae GPIC 1218226 NP_829407.1 CDS gcp_2 NC_003361.3 612410 613444 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(612410..613444) Chlamydophila caviae GPIC 1218227 NP_829408.1 CDS argR NC_003361.3 613527 613970 D similar to GB:U09005, SP:P40608, and PID:507737; identified by sequence similarity; arginine repressor ArgR 613527..613970 Chlamydophila caviae GPIC 1218228 NP_829409.1 CDS glnP NC_003361.3 614016 614669 D similar to GP:8978565; identified by sequence similarity; amino acid ABC transporter permease 614016..614669 Chlamydophila caviae GPIC 1218229 NP_829410.1 CDS glnQ NC_003361.3 614659 615339 D similar to GB:L17309, SP:P39064, PID:348049, PID:2293223, and GB:AL009126; identified by sequence similarity; amino acid ABC transporter ATP-binding protein 614659..615339 Chlamydophila caviae GPIC 1218230 NP_829411.1 CDS CCA00546 NC_003361.3 615379 616752 R similar to GB:L17309, SP:P39064, PID:348049, PID:2293223, GB:AL009126, GB:L17309, SP:P39064, PID:348049, PID:2293223, and GB:AL009126; identified by sequence similarity; hypothetical protein complement(615379..616752) Chlamydophila caviae GPIC 1218231 NP_829412.1 CDS CCA00547 NC_003361.3 616837 620286 R similar to GP:7189490, and GP:7189490; identified by sequence similarity; hypothetical protein complement(616837..620286) Chlamydophila caviae GPIC 1218232 NP_829413.1 CDS CCA00548 NC_003361.3 620283 621575 R similar to GB:M63957, SP:P30720, PID:151242, PID:999193, GB:M63957, SP:P30720, PID:151242, and PID:999193; identified by sequence similarity; ribonuclease BN family protein complement(620283..621575) Chlamydophila caviae GPIC 1218233 NP_829414.1 CDS CCA00549 NC_003361.3 621655 622467 R similar to GP:5139640, GB:M14777, GB:S76221, GB:S76223, GB:S76225, GB:S76228, GB:S76232, GB:S76235, GB:S49975, GB:M21866, GB:M21758, GB:M15872, GB:M25627, GB:S76219, SP:P08263, SP:P09210, PID:187132, PID:306809, PID:306810, PID:306815, PID:825605, and PID:951352; identified by sequence similarity; methyltransferase complement(621655..622467) Chlamydophila caviae GPIC 1218234 NP_829415.1 CDS incA NC_003361.3 622621 623688 R similar to GB:M28668, GB:M55131, GB:M55106, GB:M55107, GB:M55108, GB:M55109, GB:M55110, GB:M55111, GB:M55112, GB:M55113, GB:M55114, GB:M55115, GB:M55116, GB:M55117, GB:M55118, GB:M55119, GB:M55120, GB:M55121, GB:M55122, GB:M55123, GB:M55124, GB:M55125, GB:M55126, GB:M55127, GB:M55128, GB:M55129, GB:M55130, GB:X53294, GB:M55025, GB:M55026, GB:M55027, GB:M55028, GB:M55029, GB:M55030, GB:M55031, GB:M55032, GB:M55033, GB:M55034, GB:M55035, GB:M55036, GB:M55037, GB:M57509, GB:M65196, GB:M65197, GB:M65198, GB:M65273, GB:M65274, GB:M65276, GB:M65277, GB:M65278, GB:M65279, GB:M65280, GB:M65281, GB:M65282, GB:M65283, GB:M65284, GB:M65285, GB:M65286, GB:M65288, GB:M58478, GB:M26383, GB:D14283, GB:Z11686, GB:Y00787, SP:P13569, PID:1100104, PID:1669377, PID:1669378, PID:180292, PID:180332, PID:1809238, PID:306538, PID:553225, GB:M28668, GB:M55131, GB:M55106, GB:M55107, GB:M55108, GB:M55109, GB:M55110, GB:M55111, GB:M55112, GB:M55113, GB:M55114, GB:M55115, GB:M55116, GB:M55117, GB:M55118, GB:M55119, GB:M55120, GB:M55121; inclusion membrane protein A complement(622621..623688) Chlamydophila caviae GPIC 1218235 NP_829416.1 CDS rpe NC_003361.3 624086 624781 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 624086..624781 Chlamydophila caviae GPIC 1218236 NP_829417.1 CDS CCA00552 NC_003361.3 624768 625325 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 624768..625325 Chlamydophila caviae GPIC 1218237 NP_829418.1 CDS accB NC_003361.3 625356 625856 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 625356..625856 Chlamydophila caviae GPIC 1218238 NP_829419.1 CDS accC NC_003361.3 625856 627211 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 625856..627211 Chlamydophila caviae GPIC 1218239 NP_829420.1 CDS CCA00555 NC_003361.3 627383 628837 D hypothetical protein 627383..628837 Chlamydophila caviae GPIC 1218240 NP_829421.1 CDS CCA00556 NC_003361.3 629042 630688 D identified by match to PFAM protein family HMM PF02686; hypothetical protein 629042..630688 Chlamydophila caviae GPIC 1218241 NP_829422.1 CDS CCA00557 NC_003361.3 630802 631788 R identified by match to PFAM protein family HMM PF03334; hypothetical protein complement(630802..631788) Chlamydophila caviae GPIC 1218242 NP_829423.1 CDS CCA00558 NC_003361.3 632204 642244 D This protein has a UDP-glucose binding domain and a glycosyltransferase domain. See PMID: 9677381 and PMID: 10788427.; similar to GP:7190483; identified by sequence similarity; cytotoxin 632204..642244 Chlamydophila caviae GPIC 1218243 NP_829424.1 CDS trpB-1 NC_003361.3 642703 643941 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 642703..643941 Chlamydophila caviae GPIC 1218244 NP_829425.1 CDS CCA00561 NC_003361.3 645812 647533 D similar to GB:X73124, SP:P39577, PID:413925, GB:AL009126, GB:X73124, SP:P39577, PID:413925, and GB:AL009126; identified by sequence similarity; hypothetical protein 645812..647533 Chlamydophila caviae GPIC 1218246 NP_829426.1 CDS trpR NC_003361.3 647589 647894 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 647589..647894 Chlamydophila caviae GPIC 1218247 NP_829427.1 CDS trpD NC_003361.3 648125 649156 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 648125..649156 Chlamydophila caviae GPIC 1218248 NP_829428.1 CDS trpC NC_003361.3 649147 649968 D similar to GP:5579054; identified by sequence similarity; indole-3-glycerol phosphate synthase 649147..649968 Chlamydophila caviae GPIC 1218249 NP_829429.1 CDS trpF NC_003361.3 649958 650578 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 649958..650578 Chlamydophila caviae GPIC 1218250 NP_829430.1 CDS trpB-2 NC_003361.3 650575 651750 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 650575..651750 Chlamydophila caviae GPIC 1218251 NP_829431.1 CDS trpA NC_003361.3 651743 652516 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 651743..652516 Chlamydophila caviae GPIC 1218252 NP_829432.1 CDS kynU NC_003361.3 652528 653805 D similar to GB:L04569, GB:M57971, GB:Z34811, GB:Z34812, GB:Z34821, GB:Z34822, GB:Z34809, GB:Z34810, GB:Z34813, GB:Z34814, GB:Z34815, GB:Z34816, GB:Z34817, GB:Z34818, GB:Z34819, GB:Z34820, GB:M57972, GB:M91370, GB:Z26294, GB:Z26295, PID:291895, PID:501073, PID:508183, PID:508185, PID:508187, PID:508189, PID:508191, PID:508193, PID:508195, PID:508197, PID:508199, PID:508201, PID:509048, PID:509068, PID:509168, PID:509178, PID:509341, PID:509344, GB:L04569, GB:M57971, GB:Z34811, GB:Z34812, GB:Z34821, GB:Z34822, GB:Z34809, GB:Z34810, GB:Z34813, GB:Z34814, GB:Z34815, GB:Z34816, GB:Z34817, GB:Z34818, GB:Z34819, GB:Z34820, GB:M57972, GB:M91370, GB:Z26294, GB:Z26295, PID:291895, PID:501073, PID:508183, PID:508185, PID:508187, PID:508189, PID:508191, PID:508193, PID:508195, PID:508197, PID:508199, PID:508201, PID:509048, PID:509068, PID:509168, PID:509178, PID:509341, and PID:509344; identified by sequence similarity; kynureninase 652528..653805 Chlamydophila caviae GPIC 1218253 NP_829433.1 CDS prsA NC_003361.3 653802 654707 D similar to GP:6968355, and SP:P08330; identified by sequence similarity; ribose-phosphate pyrophosphokinase 653802..654707 Chlamydophila caviae GPIC 1218254 NP_829434.1 CDS CCA00570 NC_003361.3 654997 655821 R hypothetical protein complement(654997..655821) Chlamydophila caviae GPIC 1218255 NP_829435.1 CDS CCA00571 NC_003361.3 655845 655997 D hypothetical protein 655845..655997 Chlamydophila caviae GPIC 1218256 NP_829436.1 CDS CCA00572 NC_003361.3 656084 657451 R similar to GP:7190486; identified by sequence similarity; adenosine/AMP deaminase complement(656084..657451) Chlamydophila caviae GPIC 1218257 NP_829437.1 CDS guaA NC_003361.3 657481 659019 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(657481..659019) Chlamydophila caviae GPIC 1218258 NP_829438.1 CDS CCA00574 NC_003361.3 659035 660108 R similar to GP:7190488, GB:U10906, SP:P46527, and PID:516559; identified by sequence similarity; inosine-5'-monophosphate dehydrogenase complement(659035..660108) Chlamydophila caviae GPIC 1218259 NP_829439.1 CDS CCA00575 NC_003361.3 660435 661319 R hypothetical protein complement(660435..661319) Chlamydophila caviae GPIC 1218260 NP_829440.1 CDS CCA00576 NC_003361.3 661718 662230 D similar to GP:7189507; identified by sequence similarity; hypothetical protein 661718..662230 Chlamydophila caviae GPIC 1218261 NP_829441.1 CDS CCA00577 NC_003361.3 662231 662323 D hypothetical protein 662231..662323 Chlamydophila caviae GPIC 1218262 NP_829442.1 CDS CCA00578 NC_003361.3 662455 663297 D hypothetical protein 662455..663297 Chlamydophila caviae GPIC 1218263 NP_829443.1 CDS CCA00579 NC_003361.3 663541 663987 D similar to GB:S61968, GB:X76688, SP:P46738, GB:S61968, GB:X76688, and SP:P46738; identified by sequence similarity; hypothetical protein 663541..663987 Chlamydophila caviae GPIC 1218264 NP_829444.1 CDS CCA00580 NC_003361.3 664251 664922 D similar to GB:L01055, SP:P31715, GB:S65052, PID:295156, and PID:410007; identified by sequence similarity; hypothetical protein 664251..664922 Chlamydophila caviae GPIC 1218265 NP_829445.1 CDS tgt NC_003361.3 665038 666156 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4, 5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7- deazaguanosine); queuine tRNA-ribosyltransferase 665038..666156 Chlamydophila caviae GPIC 1218266 NP_829446.1 CDS CCA00582 NC_003361.3 666407 666853 D similar to GB:X05678, SP:P07788, GB:X07512, PID:39855, PID:39857, PID:1708638, GB:AL009126, GB:X05678, SP:P07788, GB:X07512, PID:39855, PID:39857, PID:1708638, and GB:AL009126; identified by sequence similarity; hypothetical protein 666407..666853 Chlamydophila caviae GPIC 1218267 NP_829447.1 CDS CCA00583 NC_003361.3 667360 667827 D similar to GB:X05678, SP:P07788, GB:X07512, PID:39855, PID:39857, PID:1708638, GB:AL009126, GB:X05678, SP:P07788, GB:X07512, PID:39855, PID:39857, PID:1708638, and GB:AL009126; identified by sequence similarity; hypothetical protein 667360..667827 Chlamydophila caviae GPIC 1218268 NP_829448.1 CDS CCA00584 NC_003361.3 668009 668836 D identified by match to PFAM protein family HMM PF00541; hypothetical protein 668009..668836 Chlamydophila caviae GPIC 1218269 NP_829449.1 CDS CCA00585 NC_003361.3 668961 669071 R hypothetical protein complement(668961..669071) Chlamydophila caviae GPIC 1218270 NP_829450.1 CDS CCA00586 NC_003361.3 669190 669741 D similar to GB:S61968, GB:X76688, SP:P46738, GB:S61968, GB:X76688, and SP:P46738; identified by sequence similarity; hypothetical protein 669190..669741 Chlamydophila caviae GPIC 1218271 NP_829451.1 CDS dsbB NC_003361.3 669924 670334 R similar to GB:Z28353, and PID:431949; identified by sequence similarity; disulfide oxidoreductase complement(669924..670334) Chlamydophila caviae GPIC 1218272 NP_829452.1 CDS CCA00588 NC_003361.3 670327 671025 R similar to GB:X73124, SP:P39577, PID:413925, GB:AL009126, GB:X73124, SP:P39577, PID:413925, and GB:AL009126; identified by sequence similarity; hypothetical protein complement(670327..671025) Chlamydophila caviae GPIC 1218273 NP_829453.1 CDS CCA00589 NC_003361.3 671130 671252 D hypothetical protein 671130..671252 Chlamydophila caviae GPIC 1218274 NP_829454.1 CDS CCA00590 NC_003361.3 671234 672460 D identified by match to PFAM protein family HMM PF02497; hypothetical protein 671234..672460 Chlamydophila caviae GPIC 1218275 NP_829455.1 CDS CCA00591 NC_003361.3 672469 673176 R similar to GB:X73124, SP:P39577, PID:413925, and GB:AL009126; identified by sequence similarity; hypothetical protein complement(672469..673176) Chlamydophila caviae GPIC 1218276 NP_829456.1 CDS CCA00592 NC_003361.3 673161 673868 R similar to GB:X73124, SP:P39577, PID:413925, and GB:AL009126; identified by sequence similarity; ABC transporter ATP-binding protein complement(673161..673868) Chlamydophila caviae GPIC 1218277 NP_829457.1 CDS CCA00593 NC_003361.3 674146 675039 R similar to GB:X73124, SP:P39577, PID:413925, GB:AL009126, GB:X73124, SP:P39577, PID:413925, and GB:AL009126; identified by sequence similarity; 5'-methylthioadenosine nucleosidase complement(674146..675039) Chlamydophila caviae GPIC 1218278 NP_829458.1 CDS CCA00594 NC_003361.3 675011 675235 D hypothetical protein 675011..675235 Chlamydophila caviae GPIC 1218279 NP_829459.1 CDS CCA00595 NC_003361.3 675212 675901 R similar to GB:M68877, and PID:152867; identified by sequence similarity; hypothetical protein complement(675212..675901) Chlamydophila caviae GPIC 1218280 NP_829460.1 CDS kdsB NC_003361.3 676068 676832 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 676068..676832 Chlamydophila caviae GPIC 1218281 NP_829461.1 CDS pyrG NC_003361.3 676808 678421 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 676808..678421 Chlamydophila caviae GPIC 1218282 NP_829462.1 CDS CCA00598 NC_003361.3 678414 678905 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 678414..678905 Chlamydophila caviae GPIC 1218283 NP_829463.1 CDS CCA00599 NC_003361.3 679139 680476 D similar to SP:P24141, GB:L24960, and PID:407009; identified by sequence similarity; peptide ABC transporter periplasmic binding protein 679139..680476 Chlamydophila caviae GPIC 1218284 NP_829464.1 CDS CCA00600 NC_003361.3 680595 682202 D similar to SP:P24141; identified by sequence similarity; peptide ABC transporter periplasmic binding protein 680595..682202 Chlamydophila caviae GPIC 1218285 NP_829465.1 CDS oppA NC_003361.3 682338 683975 D similar to SP:P24141, GB:Z28353, and PID:431949; identified by sequence similarity; peptide ABC transporter periplasmic binding protein 682338..683975 Chlamydophila caviae GPIC 1218286 NP_829466.1 CDS CCA00602 NC_003361.3 684202 685185 D similar to GP:8978572; identified by sequence similarity; peptide ABC transporter permease 684202..685185 Chlamydophila caviae GPIC 1218287 NP_829467.1 CDS oppC_1 NC_003361.3 685193 686101 D similar to SP:P00800, GB:X76986, PID:441267, and PID:512558; identified by sequence similarity; peptide ABC transporter permease 685193..686101 Chlamydophila caviae GPIC 1218288 NP_829468.1 CDS oppD NC_003361.3 686094 686960 D similar to SP:P00800, GB:X76986, PID:441267, and PID:512558; identified by sequence similarity; peptide ABC transporter ATP-binding protein 686094..686960 Chlamydophila caviae GPIC 1218289 NP_829469.1 CDS CCA00605 NC_003361.3 686953 687738 D similar to SP:P00800, GB:X76986, PID:441267, and PID:512558; identified by sequence similarity; peptide ABC transporter ATP-binding protein 686953..687738 Chlamydophila caviae GPIC 1218290 NP_829470.1 CDS CCA00606 NC_003361.3 688027 688782 D similar to GB:M37842, SP:P11000, and PID:153858; identified by sequence similarity; hypothetical protein 688027..688782 Chlamydophila caviae GPIC 1218291 NP_829471.1 CDS CCA00607 NC_003361.3 688829 690241 D similar to GP:8978580; identified by sequence similarity; sodium:sulfate symporter family protein 688829..690241 Chlamydophila caviae GPIC 1218292 NP_829472.1 CDS CCA00608 NC_003361.3 690350 692005 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 690350..692005 Chlamydophila caviae GPIC 1218293 NP_829473.1 CDS CCA00609 NC_003361.3 692128 692940 D similar to GB:X78729, SP:P45600, and PID:511012; identified by sequence similarity; dienelactone hydrolase 692128..692940 Chlamydophila caviae GPIC 1218294 NP_829474.1 CDS CCA00610 NC_003361.3 692950 694569 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 692950..694569 Chlamydophila caviae GPIC 1218295 NP_829475.1 CDS kdtA NC_003361.3 694839 696143 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(694839..696143) Chlamydophila caviae GPIC 1218296 NP_829476.1 CDS leuS NC_003361.3 696140 698602 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(696140..698602) Chlamydophila caviae GPIC 1218297 NP_829477.1 CDS CCA00613 NC_003361.3 698658 698783 D hypothetical protein 698658..698783 Chlamydophila caviae GPIC 1218298 NP_829478.1 CDS CCA00614 NC_003361.3 698834 699781 D similar to SP:P11895, GB:M35124, SP:P16077, GB:X05813, GB:X13521, PID:14584, PID:147886, PID:148608, PID:42375, and PID:42645; identified by sequence similarity; hypothetical protein 698834..699781 Chlamydophila caviae GPIC 1218299 NP_829479.1 CDS CCA00615 NC_003361.3 699929 701449 D similar to SP:P11895, GB:M35124, SP:P16077, GB:X05813, GB:X13521, PID:14584, PID:147886, PID:148608, PID:42375, PID:42645, SP:P11895, GB:M35124, SP:P16077, GB:X05813, GB:X13521, PID:14584, PID:147886, PID:148608, PID:42375, and PID:42645; identified by sequence similarity; hypothetical protein 699929..701449 Chlamydophila caviae GPIC 1218300 NP_829480.1 CDS CCA00616 NC_003361.3 701508 705884 R identified by match to TIGR protein family HMM TIGR01870; hypothetical protein complement(701508..705884) Chlamydophila caviae GPIC 1218301 NP_829481.1 CDS ligA NC_003361.3 706045 708033 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(706045..708033) Chlamydophila caviae GPIC 1218302 NP_829482.1 CDS CCA00618 NC_003361.3 708041 709897 R similar to GP:7189538; identified by sequence similarity; protein kinase complement(708041..709897) Chlamydophila caviae GPIC 1218303 NP_829483.1 CDS CCA00619 NC_003361.3 710150 710515 R similar to GB:D38405, PID:551625, SP:Q59536, GB:D38405, PID:551625, and SP:Q59536; identified by sequence similarity; hypothetical protein complement(710150..710515) Chlamydophila caviae GPIC 1218304 NP_829484.1 CDS CCA00620 NC_003361.3 710789 711157 R similar to GB:D38405, PID:551625, and SP:Q59536; identified by sequence similarity; hypothetical protein complement(710789..711157) Chlamydophila caviae GPIC 1218305 NP_829485.1 CDS CCA00621 NC_003361.3 711509 711835 R similar to GB:D38405, PID:551625, SP:Q59536, GB:D38405, PID:551625, and SP:Q59536; identified by sequence similarity; hypothetical protein complement(711509..711835) Chlamydophila caviae GPIC 1218306 NP_829486.1 CDS CCA00622 NC_003361.3 711925 712356 R identified by match to PFAM protein family HMM PF03334; hypothetical protein complement(711925..712356) Chlamydophila caviae GPIC 1218307 NP_829487.1 CDS CCA00623 NC_003361.3 712436 713944 R similar to GB:D38405, PID:551625, and SP:Q59536; identified by sequence similarity; hypothetical protein complement(712436..713944) Chlamydophila caviae GPIC 1218308 NP_829488.1 CDS CCA00624 NC_003361.3 714234 716759 D similar to GB:L09228, SP:P17616, GB:X51510, PID:40084, PID:410123, and GB:AL009126; identified by sequence similarity; hypothetical protein 714234..716759 Chlamydophila caviae GPIC 1218309 NP_829489.1 CDS clpB NC_003361.3 716895 719489 R identified by match to PFAM protein family HMM PF02381; ATP-dependent Clp protease, subunit B complement(716895..719489) Chlamydophila caviae GPIC 1218310 NP_829490.1 CDS CCA00626 NC_003361.3 719541 720341 R identified by match to PFAM protein family HMM PF02470; ABC transporter periplasmic substrate-binding protein complement(719541..720341) Chlamydophila caviae GPIC 1218311 NP_829491.1 CDS CCA00627 NC_003361.3 720371 721117 R similar to GB:Z12296, and PID:43338; identified by sequence similarity; ABC transporter ATP-binding protein complement(720371..721117) Chlamydophila caviae GPIC 1218312 NP_829492.1 CDS CCA00628 NC_003361.3 721126 721917 R similar to GB:Z12296, PID:43338, GB:Z12296, and PID:43338; identified by sequence similarity; ABC transporter permease complement(721126..721917) Chlamydophila caviae GPIC 1218313 NP_829493.1 CDS hemL NC_003361.3 721948 723261 R catalyzes the formation of 5-aminolevulinate from (S)-4-amino-5-oxopentanoate; glutamate-1-semialdehyde aminotransferase complement(721948..723261) Chlamydophila caviae GPIC 1218314 NP_829494.1 CDS CCA00630 NC_003361.3 723353 723922 R identified by match to PFAM protein family HMM PF02622; hypothetical protein complement(723353..723922) Chlamydophila caviae GPIC 1218315 NP_829495.1 CDS CCA00631 NC_003361.3 723939 724379 R similar to GB:M99391, and PID:152478; identified by sequence similarity; hypothetical protein complement(723939..724379) Chlamydophila caviae GPIC 1218316 NP_829496.1 CDS rpiA NC_003361.3 724376 725077 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(724376..725077) Chlamydophila caviae GPIC 1218317 NP_829497.1 CDS CCA00633 NC_003361.3 725268 726362 R identified by match to PFAM protein family HMM PF03334; hypothetical protein complement(725268..726362) Chlamydophila caviae GPIC 1218318 NP_829498.1 CDS CCA00634 NC_003361.3 726526 727776 R hypothetical protein complement(726526..727776) Chlamydophila caviae GPIC 1218319 NP_829499.1 CDS CCA00635 NC_003361.3 727793 727885 D hypothetical protein 727793..727885 Chlamydophila caviae GPIC 1218320 NP_829500.1 CDS CCA00636 NC_003361.3 727991 729226 R similar to GP:7189329; identified by sequence similarity; hypothetical protein complement(727991..729226) Chlamydophila caviae GPIC 1218321 NP_829501.1 CDS CCA00637 NC_003361.3 729329 729451 R hypothetical protein complement(729329..729451) Chlamydophila caviae GPIC 1218322 NP_829502.1 CDS CCA00638 NC_003361.3 729643 729924 R hypothetical protein complement(729643..729924) Chlamydophila caviae GPIC 1218323 NP_829503.1 CDS CCA00639 NC_003361.3 730349 732019 R similar to GB:L17309, SP:P39064, PID:348049, PID:2293223, GB:AL009126, GB:L17309, SP:P39064, PID:348049, PID:2293223, and GB:AL009126; identified by sequence similarity; hypothetical protein complement(730349..732019) Chlamydophila caviae GPIC 1218324 NP_829504.1 CDS CCA00640 NC_003361.3 732383 733138 D identified by match to TIGR protein family HMM TIGR00486; hypothetical protein 732383..733138 Chlamydophila caviae GPIC 1218325 NP_829505.1 CDS pepF NC_003361.3 733232 735061 D identified by match to PFAM protein family HMM PF04063; oligoendopeptidase F 733232..735061 Chlamydophila caviae GPIC 1218326 NP_829506.1 CDS groES NC_003361.3 735193 735501 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 735193..735501 Chlamydophila caviae GPIC 1218327 NP_829507.1 CDS groEL NC_003361.3 735552 737186 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 735552..737186 Chlamydophila caviae GPIC 1218328 NP_829508.1 CDS CCA00644 NC_003361.3 737328 738131 D similar to GB:U11013, PID:506777, and SP:P50927; identified by sequence similarity; hypothetical protein 737328..738131 Chlamydophila caviae GPIC 1218329 NP_829509.1 CDS CCA00645 NC_003361.3 738381 738779 D identified by match to PFAM protein family HMM PF03083; hypothetical protein 738381..738779 Chlamydophila caviae GPIC 1218330 NP_829510.1 CDS CCA00646 NC_003361.3 738595 738714 R hypothetical protein complement(738595..738714) Chlamydophila caviae GPIC 1218331 NP_829511.1 CDS CCA00647 NC_003361.3 738878 739687 D similar to GP:8978503; identified by sequence similarity; hypothetical protein 738878..739687 Chlamydophila caviae GPIC 1218332 NP_829512.1 CDS CCA00648 NC_003361.3 739842 740615 R biotin apo-protein ligase-like protein complement(739842..740615) Chlamydophila caviae GPIC 1218333 NP_829513.1 CDS CCA00649 NC_003361.3 740749 741765 D similar to GB:L34167, PID:508600, GB:L34167, and PID:508600; identified by sequence similarity; hypothetical protein 740749..741765 Chlamydophila caviae GPIC 1218334 NP_829514.1 CDS CCA00650 NC_003361.3 742283 744490 D similar to GB:U11017, PID:506782, and SP:P50929; identified by sequence similarity; recombinase D 742283..744490 Chlamydophila caviae GPIC 1218335 NP_829515.1 CDS metG NC_003361.3 744504 746156 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(744504..746156) Chlamydophila caviae GPIC 1218336 NP_829516.1 CDS CCA00652 NC_003361.3 746156 746452 R similar to GB:U11017, PID:506782, and SP:P50929; identified by sequence similarity; hypothetical protein complement(746156..746452) Chlamydophila caviae GPIC 1218337 NP_829517.1 CDS gmk NC_003361.3 746449 747063 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(746449..747063) Chlamydophila caviae GPIC 1218338 NP_829518.1 CDS rnhB NC_003361.3 747070 747708 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(747070..747708) Chlamydophila caviae GPIC 1218339 NP_829519.1 CDS rplS NC_003361.3 747766 748131 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(747766..748131) Chlamydophila caviae GPIC 1218340 NP_829520.1 CDS trmD NC_003361.3 748155 749222 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; Chlamydial proteins show a C-terminal extension of unknown function; tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein complement(748155..749222) Chlamydophila caviae GPIC 1218341 NP_829521.1 CDS rpsP NC_003361.3 749237 749596 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(749237..749596) Chlamydophila caviae GPIC 1218342 NP_829522.1 CDS ffh NC_003361.3 749587 750930 R similar to GB:U11020, PID:506786, and SP:P50931; identified by sequence similarity; signal recognition particle protein complement(749587..750930) Chlamydophila caviae GPIC 1218343 NP_829523.1 CDS hemK NC_003361.3 750957 751808 R HemK; PrmC; transfers a methyl group from S-adenosyl-methionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB possibly stimulating release of completed polypeptide chains; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(750957..751808) Chlamydophila caviae GPIC 1218344 NP_829524.1 CDS prfA NC_003361.3 751786 752871 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(751786..752871) Chlamydophila caviae GPIC 1218345 NP_829525.1 CDS rpmE2 NC_003361.3 753293 753619 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(753293..753619) Chlamydophila caviae GPIC 1218346 NP_829526.1 CDS CCA00662 NC_003361.3 753703 754452 D hypothetical protein 753703..754452 Chlamydophila caviae GPIC 1218347 NP_829527.1 CDS CCA00663 NC_003361.3 754762 756651 D similar to SP:P07024, GB:X03895, PID:1773162, and PID:1786687; identified by sequence similarity; signal peptidase I 754762..756651 Chlamydophila caviae GPIC 1218348 NP_829528.1 CDS ileS NC_003361.3 756707 759838 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase complement(756707..759838) Chlamydophila caviae GPIC 1218349 NP_829529.1 CDS CCA00665 NC_003361.3 760599 761096 D similar to GB:L04979, SP:P28307, PID:290425, PID:1147564, GB:U00096, PID:1651511, PID:1651514, and PID:1787279; identified by sequence similarity; hypothetical protein 760599..761096 Chlamydophila caviae GPIC 1218350 NP_829530.1 CDS CCA00666 NC_003361.3 761100 762392 R identified by match to PFAM protein family HMM PF02562; phoH family protein complement(761100..762392) Chlamydophila caviae GPIC 1218351 NP_829531.1 CDS CCA00667 NC_003361.3 762619 763440 D hypothetical protein 762619..763440 Chlamydophila caviae GPIC 1218352 NP_829532.1 CDS CCA00668 NC_003361.3 763587 764816 D similar to GB:L04979, SP:P28307, PID:290425, PID:1147564, GB:U00096, PID:1651511, PID:1651514, and PID:1787279; identified by sequence similarity; hypothetical protein 763587..764816 Chlamydophila caviae GPIC 1218353 NP_829533.1 CDS cydB NC_003361.3 765130 766191 R identified by match to PFAM protein family HMM PF02652; cytochrome d oxidase, subunit II complement(765130..766191) Chlamydophila caviae GPIC 1218354 NP_829534.1 CDS cydA NC_003361.3 766194 767534 R similar to GB:L04979, SP:P28307, PID:290425, PID:1147564, GB:U00096, PID:1651511, PID:1651514, and PID:1787279; identified by sequence similarity; cytochrome d oxidase subunit I complement(766194..767534) Chlamydophila caviae GPIC 1218355 NP_829535.1 CDS CCA00671 NC_003361.3 767734 768528 D identified by match to PFAM protein family HMM PF02457; hypothetical protein 767734..768528 Chlamydophila caviae GPIC 1218356 NP_829536.1 CDS CCA00672 NC_003361.3 768510 769793 D similar to GP:7189588; identified by sequence similarity; hypothetical protein 768510..769793 Chlamydophila caviae GPIC 1218357 NP_829537.1 CDS CCA00673 NC_003361.3 769998 771344 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 769998..771344 Chlamydophila caviae GPIC 1218358 NP_829538.1 CDS CCA00674 NC_003361.3 771398 771727 D hypothetical protein 771398..771727 Chlamydophila caviae GPIC 1218359 NP_829539.1 CDS pyk NC_003361.3 771744 773189 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(771744..773189) Chlamydophila caviae GPIC 1218360 NP_829540.1 CDS uvrA NC_003361.3 773526 778946 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 773526..778946 Chlamydophila caviae GPIC 1218361 NP_829541.1 CDS pknD NC_003361.3 778941 781733 R PknD; responsible for phosphorylation of proteins on serine and threonine residues; similar to eukaryotic Ser/Thr kinases; in Chlamydia trachomatis itseems to interact with Pkn1, another serine/threonine-protein kinase; serine/threonine-protein kinase complement(778941..781733) Chlamydophila caviae GPIC 1218362 NP_829542.1 CDS valS NC_003361.3 781754 784576 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(781754..784576) Chlamydophila caviae GPIC 1218363 NP_829543.1 CDS CCA00679 NC_003361.3 784635 785123 R hypothetical protein complement(784635..785123) Chlamydophila caviae GPIC 1218364 NP_829544.1 CDS atpK NC_003361.3 785074 785499 R produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K complement(785074..785499) Chlamydophila caviae GPIC 1218365 NP_829545.1 CDS atpI NC_003361.3 785630 787585 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I complement(785630..787585) Chlamydophila caviae GPIC 1218366 NP_829546.1 CDS CCA00682 NC_003361.3 787576 788202 R produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D complement(787576..788202) Chlamydophila caviae GPIC 1218367 NP_829547.1 CDS atpB NC_003361.3 788187 789503 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(788187..789503) Chlamydophila caviae GPIC 1218368 NP_829548.1 CDS atpA NC_003361.3 789508 791283 R produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A complement(789508..791283) Chlamydophila caviae GPIC 1218369 NP_829549.1 CDS CCA00685 NC_003361.3 791277 792077 R similar to GP:7190621; identified by sequence similarity; hypothetical protein complement(791277..792077) Chlamydophila caviae GPIC 1218370 NP_829550.1 CDS CCA00686 NC_003361.3 792125 792751 R produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit E complement(792125..792751) Chlamydophila caviae GPIC 1218371 NP_829551.1 CDS CCA00687 NC_003361.3 792868 793626 D similar to GB:Z35107, and PID:510938; identified by sequence similarity; hypothetical protein 792868..793626 Chlamydophila caviae GPIC 1218372 NP_829552.1 CDS CCA00688 NC_003361.3 793639 794049 R similar to GB:Z35107, PID:510938, GB:Z35107, and PID:510938; identified by sequence similarity; hypothetical protein complement(793639..794049) Chlamydophila caviae GPIC 1218373 NP_829553.1 CDS tal NC_003361.3 794071 795054 R Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B complement(794071..795054) Chlamydophila caviae GPIC 1218374 NP_829554.1 CDS rpoC NC_003361.3 795174 799355 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(795174..799355) Chlamydophila caviae GPIC 1218375 NP_829555.1 CDS rpoB NC_003361.3 799383 803141 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(799383..803141) Chlamydophila caviae GPIC 1218376 NP_829556.1 CDS rplL NC_003361.3 803279 803671 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(803279..803671) Chlamydophila caviae GPIC 1218377 NP_829557.1 CDS rplJ NC_003361.3 803713 804225 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(803713..804225) Chlamydophila caviae GPIC 1218378 NP_829558.1 CDS rplA NC_003361.3 804239 804937 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(804239..804937) Chlamydophila caviae GPIC 1218379 NP_829559.1 CDS rplK NC_003361.3 804960 805385 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(804960..805385) Chlamydophila caviae GPIC 1218380 NP_829560.1 CDS nusG NC_003361.3 805492 806040 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(805492..806040) Chlamydophila caviae GPIC 1218381 NP_829561.1 CDS secE NC_003361.3 806045 806290 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(806045..806290) Chlamydophila caviae GPIC 1218382 NP_829562.1 CDS tuf NC_003361.3 806451 807635 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(806451..807635) Chlamydophila caviae GPIC 1218383 NP_829563.1 CDS infA NC_003361.3 807828 808049 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(807828..808049) Chlamydophila caviae GPIC 1218384 NP_829564.1 CDS CCA00700 NC_003361.3 808350 809336 D identified by match to PFAM protein family HMM PF02517; hypothetical protein 808350..809336 Chlamydophila caviae GPIC 1218385 NP_829565.1 CDS CCA00701 NC_003361.3 809339 809788 D similar to GP:7189619; identified by sequence similarity; hypothetical protein 809339..809788 Chlamydophila caviae GPIC 1218386 NP_829566.1 CDS CCA00702 NC_003361.3 810214 811950 D similar to GP:1236759; identified by sequence similarity; hypothetical protein 810214..811950 Chlamydophila caviae GPIC 1218387 NP_829567.1 CDS CCA00703 NC_003361.3 812129 812350 R hypothetical protein complement(812129..812350) Chlamydophila caviae GPIC 1218388 NP_829568.1 CDS CCA00704 NC_003361.3 812397 812576 R hypothetical protein complement(812397..812576) Chlamydophila caviae GPIC 1218389 NP_829569.1 CDS CCA00705 NC_003361.3 812747 812896 D hypothetical protein 812747..812896 Chlamydophila caviae GPIC 1218390 NP_829570.1 CDS CCA00706 NC_003361.3 812882 813481 R similar to GB:L19895, SP:P43877, PID:469174, GB:L19895, SP:P43877, and PID:469174; identified by sequence similarity; hypothetical protein complement(812882..813481) Chlamydophila caviae GPIC 1218391 NP_829571.1 CDS CCA00707 NC_003361.3 813864 815729 D identified by match to PFAM protein family HMM PF02984; hypothetical protein 813864..815729 Chlamydophila caviae GPIC 1218392 NP_829572.1 CDS CCA00708 NC_003361.3 815883 816233 R identified by match to PFAM protein family HMM PF03025; hypothetical protein complement(815883..816233) Chlamydophila caviae GPIC 1218393 NP_829573.1 CDS CCA00709 NC_003361.3 816306 817976 R similar to GB:X73124, SP:P39577, PID:413925, GB:AL009126, GB:X73124, SP:P39577, PID:413925, and GB:AL009126; identified by sequence similarity; hypothetical protein complement(816306..817976) Chlamydophila caviae GPIC 1218394 NP_829574.1 CDS CCA00710 NC_003361.3 818318 818848 R similar to GB:L25276, SP:P35641, PID:408488, GB:L25276, SP:P35641, and PID:408488; identified by sequence similarity; hypothetical protein complement(818318..818848) Chlamydophila caviae GPIC 1218395 NP_829575.1 CDS CCA00711 NC_003361.3 819152 819466 R hypothetical protein complement(819152..819466) Chlamydophila caviae GPIC 1218396 NP_829576.1 CDS dapA NC_003361.3 819598 820467 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(819598..820467) Chlamydophila caviae GPIC 1218397 NP_829577.1 CDS lysC NC_003361.3 820478 821800 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase complement(820478..821800) Chlamydophila caviae GPIC 1218398 NP_829578.1 CDS asd NC_003361.3 821788 822792 R catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase complement(821788..822792) Chlamydophila caviae GPIC 1218399 NP_829579.1 CDS dapB NC_003361.3 822978 823718 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(822978..823718) Chlamydophila caviae GPIC 1218400 NP_829580.1 CDS phhA NC_003361.3 823928 824761 D phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 823928..824761 Chlamydophila caviae GPIC 1218401 NP_829581.1 CDS CCA00717 NC_003361.3 824742 825413 D identified by match to PFAM protein family HMM PF02592; hypothetical protein 824742..825413 Chlamydophila caviae GPIC 1218402 NP_829582.1 CDS CCA00718 NC_003361.3 825501 826580 D similar to GP:7190297, and GP:7190297; identified by sequence similarity; hypothetical protein 825501..826580 Chlamydophila caviae GPIC 1218403 NP_829583.1 CDS CCA00719 NC_003361.3 826588 827436 D similar to GP:6117874; identified by sequence similarity; short chain dehydrogenase 826588..827436 Chlamydophila caviae GPIC 1218404 NP_829584.1 CDS CCA00721 NC_003361.3 827692 828081 R A segment of this protein has high similarity to a Chlamydia phage protein.; similar to GP:7406593, and GP:7406593; identified by sequence similarity; hypothetical protein complement(827692..828081) Chlamydophila caviae GPIC 1218406 NP_829585.1 CDS CCA00722 NC_003361.3 828196 828549 R This protein contains two segments highly homologous to Chlamydia phage proteins.; similar to GP:7406595, GP:7406595, and GP:7406589; identified by sequence similarity; hypothetical protein complement(828196..828549) Chlamydophila caviae GPIC 1218407 NP_829586.1 CDS aroA NC_003361.3 828613 829953 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 828613..829953 Chlamydophila caviae GPIC 1218408 NP_829587.1 CDS aroK NC_003361.3 829889 830410 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 829889..830410 Chlamydophila caviae GPIC 1218409 NP_829588.1 CDS aroC NC_003361.3 830407 831486 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 830407..831486 Chlamydophila caviae GPIC 1218410 NP_829589.1 CDS aroB NC_003361.3 831483 832622 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 831483..832622 Chlamydophila caviae GPIC 1218411 NP_829590.1 CDS aroDE NC_003361.3 832603 834036 D AroDE; bifunctional enzyme; can convert 3-dehydroquinate to 3-dehydroshkimate and then to shikimate; involved in the synthesis of aromatic amino acids and other metabolites; type I 3-DHQase; bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase 832603..834036 Chlamydophila caviae GPIC 1218412 NP_829591.1 CDS CCA00728 NC_003361.3 834088 834879 D similar to GB:M17642, SP:P11469, PID:142968, and GB:AL009126; identified by sequence similarity; hypothetical protein 834088..834879 Chlamydophila caviae GPIC 1218413 NP_829592.1 CDS CCA00729 NC_003361.3 834984 836339 D identified by match to PFAM protein family HMM PF00089; hypothetical protein 834984..836339 Chlamydophila caviae GPIC 1218414 NP_829593.1 CDS CCA00730 NC_003361.3 836367 836954 D similar to GB:M99391, and PID:152478; identified by sequence similarity; hypothetical protein 836367..836954 Chlamydophila caviae GPIC 1218415 NP_829594.1 CDS arcD NC_003361.3 836964 838424 D similar to GP:8163506; identified by sequence similarity; amino acid permease 836964..838424 Chlamydophila caviae GPIC 1218416 NP_829595.1 CDS CCA00732 NC_003361.3 838589 839629 D identified by match to PFAM protein family HMM PF01266; DadA family oxidoreductase 838589..839629 Chlamydophila caviae GPIC 1218417 NP_829596.1 CDS CCA00733 NC_003361.3 839619 840443 R identified by match to PFAM protein family HMM PF02588; hypothetical protein complement(839619..840443) Chlamydophila caviae GPIC 1218418 NP_829597.1 CDS mdh NC_003361.3 840466 841458 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(840466..841458) Chlamydophila caviae GPIC 1218419 NP_829598.1 CDS CCA00735 NC_003361.3 841810 841953 R similar to GB:U11013, PID:506777, and SP:P50927; identified by sequence similarity; hypothetical protein complement(841810..841953) Chlamydophila caviae GPIC 1218420 NP_829599.1 CDS pgi NC_003361.3 842059 843642 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(842059..843642) Chlamydophila caviae GPIC 1218421 NP_829600.1 CDS xerD NC_003361.3 843715 844611 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 843715..844611 Chlamydophila caviae GPIC 1218422 NP_829601.1 CDS CCA00738 NC_003361.3 844608 844895 R similar to GB:U11013, PID:506777, SP:P50927, GB:U11013, PID:506777, and SP:P50927; identified by sequence similarity; hypothetical protein complement(844608..844895) Chlamydophila caviae GPIC 1218423 NP_829602.1 CDS CCA00739 NC_003361.3 845259 846701 D similar to GB:U11013, PID:506777, and SP:P50927; identified by sequence similarity; hypothetical protein 845259..846701 Chlamydophila caviae GPIC 1218424 NP_829603.1 CDS CCA00740 NC_003361.3 846701 847219 D similar to GB:M74042, PID:454843, and SP:P50928; identified by sequence similarity; type III secretion chaperone 846701..847219 Chlamydophila caviae GPIC 1218425 NP_829604.1 CDS CCA00741 NC_003361.3 847244 848758 D similar to GB:M74042, PID:454843, and SP:P50928; identified by sequence similarity; hypothetical protein 847244..848758 Chlamydophila caviae GPIC 1218426 NP_829605.1 CDS CCA00742 NC_003361.3 848778 850262 D similar to GB:M74042, PID:454843, and SP:P50928; identified by sequence similarity; hypothetical protein 848778..850262 Chlamydophila caviae GPIC 1218427 NP_829606.1 CDS CCA00743 NC_003361.3 850270 850992 R similar to GB:M74042, PID:454843, SP:P50928, GB:M74042, PID:454843, and SP:P50928; identified by sequence similarity; hypothetical protein complement(850270..850992) Chlamydophila caviae GPIC 1218428 NP_829607.1 CDS ispH NC_003361.3 850955 851884 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(850955..851884) Chlamydophila caviae GPIC 1218429 NP_829608.1 CDS CCA00745 NC_003361.3 851994 853775 R similar to GB:M74042, PID:454843, and SP:P50928; identified by sequence similarity; hypothetical protein complement(851994..853775) Chlamydophila caviae GPIC 1218430 NP_829609.1 CDS CCA00746 NC_003361.3 853890 855152 R identified by match to PFAM protein family HMM PF02447; Na+/H+ antiporter complement(853890..855152) Chlamydophila caviae GPIC 1218431 NP_829610.1 CDS CCA00747 NC_003361.3 855428 857128 D similar to GB:U11017, PID:506782, and SP:P50929; identified by sequence similarity; sulfate transporter family protein 855428..857128 Chlamydophila caviae GPIC 1218432 NP_829611.1 CDS fumC NC_003361.3 857125 858507 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(857125..858507) Chlamydophila caviae GPIC 1218433 NP_829612.1 CDS CCA00749 NC_003361.3 858560 860392 D similar to GB:U11017, PID:506782, and SP:P50929; identified by sequence similarity; ABC transporter permease 858560..860392 Chlamydophila caviae GPIC 1218434 NP_829613.1 CDS CCA00750 NC_003361.3 861051 861659 D similar to GP:7190282; identified by sequence similarity; hypothetical protein 861051..861659 Chlamydophila caviae GPIC 1218435 NP_829614.1 CDS CCA00751 NC_003361.3 861672 862280 D similar to GB:U11020, PID:506786, SP:P50931, GB:U11020, PID:506786, and SP:P50931; identified by sequence similarity; hypothetical protein 861672..862280 Chlamydophila caviae GPIC 1218436 NP_829615.1 CDS map NC_003361.3 862290 863165 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase 862290..863165 Chlamydophila caviae GPIC 1218437 NP_829616.1 CDS CCA00753 NC_003361.3 863122 864399 R similar to GB:U11020, PID:506786, and SP:P50931; identified by sequence similarity; hypothetical protein complement(863122..864399) Chlamydophila caviae GPIC 1218438 NP_829617.1 CDS CCA00754 NC_003361.3 864412 864597 R similar to GB:U11020, PID:506786, and SP:P50931; identified by sequence similarity; hypothetical protein complement(864412..864597) Chlamydophila caviae GPIC 1218439 NP_829618.1 CDS CCA00755 NC_003361.3 864851 865354 D similar to SP:P07024, GB:X03895, PID:1773162, and PID:1786687; identified by sequence similarity; hypothetical protein 864851..865354 Chlamydophila caviae GPIC 1218440 NP_829619.1 CDS CCA00756 NC_003361.3 865405 865923 D hypothetical protein 865405..865923 Chlamydophila caviae GPIC 1218441 NP_829620.1 CDS CCA00757 NC_003361.3 865943 866473 D similar to SP:P07024, GB:X03895, PID:1773162, and PID:1786687; identified by sequence similarity; hypothetical protein 865943..866473 Chlamydophila caviae GPIC 1218442 NP_829621.1 CDS CCA00758 NC_003361.3 866557 867264 D similar to SP:P07024, GB:X03895, PID:1773162, and PID:1786687; identified by sequence similarity; hypothetical protein 866557..867264 Chlamydophila caviae GPIC 1218443 NP_829622.1 CDS CCA00759 NC_003361.3 867261 867491 R similar to GP:8979375; identified by sequence similarity; hypothetical protein complement(867261..867491) Chlamydophila caviae GPIC 1218444 NP_829623.1 CDS CCA00760 NC_003361.3 867481 867954 R identified by match to PFAM protein family HMM PF00383; cytidine/deoxycytidylate deaminase complement(867481..867954) Chlamydophila caviae GPIC 1218445 NP_829624.1 CDS rpsO NC_003361.3 868198 868467 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 868198..868467 Chlamydophila caviae GPIC 1218446 NP_829625.1 CDS pnpA NC_003361.3 868515 870599 D identified by match to PFAM protein family HMM PF02548; polynucleotide phosphorylase 868515..870599 Chlamydophila caviae GPIC 1218447 NP_829626.1 CDS CCA00763 NC_003361.3 870688 873429 R identified by match to PFAM protein family HMM PF02642; cell division protein FtsH complement(870688..873429) Chlamydophila caviae GPIC 1218448 NP_829627.1 CDS CCA00764 NC_003361.3 873603 874556 R identified by match to PFAM protein family HMM PF02629; MesJ/Ycf62 family protein complement(873603..874556) Chlamydophila caviae GPIC 1218449 NP_829628.1 CDS CCA00765 NC_003361.3 874671 875744 D similar to SP:P13979, GB:X52553, SP:P15177, SP:P32885, and GB:J01769; identified by sequence similarity; hypothetical protein 874671..875744 Chlamydophila caviae GPIC 1218450 NP_829629.1 CDS CCA00766 NC_003361.3 875748 876851 D similar to SP:P13979, GB:X52553, SP:P15177, SP:P32885, and GB:J01769; identified by sequence similarity; hypothetical protein 875748..876851 Chlamydophila caviae GPIC 1218451 NP_829630.1 CDS CCA00767 NC_003361.3 876838 878865 R similar to SP:P13979, GB:X52553, SP:P15177, SP:P32885, and GB:J01769; identified by sequence similarity; hypothetical protein complement(876838..878865) Chlamydophila caviae GPIC 1218452 NP_829631.1 CDS pheS NC_003361.3 879185 880210 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(879185..880210) Chlamydophila caviae GPIC 1218453 NP_829632.1 CDS rplT NC_003361.3 880223 880588 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(880223..880588) Chlamydophila caviae GPIC 1218454 NP_829633.1 CDS rpmI NC_003361.3 880607 880801 R identified by match to PFAM protein family HMM PF01632; 50S ribosomal protein L35 complement(880607..880801) Chlamydophila caviae GPIC 1218455 NP_829634.1 CDS infC NC_003361.3 880779 881339 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(880779..881339) Chlamydophila caviae GPIC 1218456 NP_829635.1 CDS nusB NC_003361.3 881761 882258 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 881761..882258 Chlamydophila caviae GPIC 1218457 NP_829636.1 CDS murB NC_003361.3 882290 883180 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 882290..883180 Chlamydophila caviae GPIC 1218458 NP_829637.1 CDS CCA00774 NC_003361.3 883158 883754 R similar to GP:7190256; identified by sequence similarity; hypothetical protein complement(883158..883754) Chlamydophila caviae GPIC 1218459 NP_829638.1 CDS trmB NC_003361.3 883869 884543 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(883869..884543) Chlamydophila caviae GPIC 1218460 NP_829639.1 CDS nrdB NC_003361.3 884721 885761 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta complement(884721..885761) Chlamydophila caviae GPIC 1218461 NP_829640.1 CDS nrdA NC_003361.3 885785 888919 R catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(885785..888919) Chlamydophila caviae GPIC 1218462 NP_829641.1 CDS CCA00778 NC_003361.3 889295 890101 D similar to GB:D14982, GB:Z33123, SP:P43044, PID:416242, and SP:P35879; identified by sequence similarity; glycerol-serine phosphatidyltransferase 889295..890101 Chlamydophila caviae GPIC 1218463 NP_829642.1 CDS CCA00779 NC_003361.3 890098 891336 D similar to GB:D14982, GB:Z33123, SP:P43044, PID:416242, GB:D14982, GB:Z33123, SP:P43044, and PID:416242; identified by sequence similarity; RmuC domain-containing protein 890098..891336 Chlamydophila caviae GPIC 1218464 NP_829643.1 CDS CCA00780 NC_003361.3 891341 894265 R similar to GB:D14982, GB:Z33123, SP:P43044, and PID:416242; identified by sequence similarity; insulinase metalloprotease complement(891341..894265) Chlamydophila caviae GPIC 1218465 NP_829644.1 CDS CCA00781 NC_003361.3 894414 895778 D similar to GB:D14982, GB:Z33123, SP:P43044, and PID:416242; identified by sequence similarity; M20/M25/M40 family peptidase 894414..895778 Chlamydophila caviae GPIC 1218466 NP_829645.1 CDS htrA NC_003361.3 895834 897300 R similar to GB:D14982, GB:Z33123, SP:P43044, and PID:416242; identified by sequence similarity; serine protease complement(895834..897300) Chlamydophila caviae GPIC 1218467 NP_829646.1 CDS sucD NC_003361.3 897636 898511 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(897636..898511) Chlamydophila caviae GPIC 1218468 NP_829647.1 CDS sucC NC_003361.3 898520 899686 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(898520..899686) Chlamydophila caviae GPIC 1218469 NP_829648.1 CDS ftsY NC_003361.3 899757 900614 D identified by match to PFAM protein family HMM PF02881; signal recognition particle-docking protein FtsY 899757..900614 Chlamydophila caviae GPIC 1218470 NP_829649.1 CDS CCA00786 NC_003361.3 900626 901342 R similar to GP:7190243, and GP:7190243; identified by sequence similarity; hypothetical protein complement(900626..901342) Chlamydophila caviae GPIC 1218471 NP_829650.1 CDS CCA00787 NC_003361.3 901398 902585 R similar to GB:M86713, SP:P31522, PID:155488, and PID:1322009; identified by sequence similarity; aromatic amino acid transport protein complement(901398..902585) Chlamydophila caviae GPIC 1218472 NP_829651.1 CDS glmS NC_003361.3 902654 904483 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(902654..904483) Chlamydophila caviae GPIC 1218473 NP_829652.1 CDS glmM NC_003361.3 904491 905867 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(904491..905867) Chlamydophila caviae GPIC 1218474 NP_829653.1 CDS CCA00790 NC_003361.3 906307 906477 R hypothetical protein complement(906307..906477) Chlamydophila caviae GPIC 1218475 NP_829654.1 CDS CCA00791 NC_003361.3 906507 907793 D similar to GB:X69464, PID:398210, and PID:398211; identified by sequence similarity; poly(A) polymerase 906507..907793 Chlamydophila caviae GPIC 1218476 NP_829655.1 CDS lpxB NC_003361.3 907807 909687 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate; lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 907807..909687 Chlamydophila caviae GPIC 1218477 NP_829656.1 CDS CCA00793 NC_003361.3 909998 910756 R similar to GP:6382503; identified by sequence similarity; hypothetical protein complement(909998..910756) Chlamydophila caviae GPIC 1218478 NP_829657.1 CDS CCA00794 NC_003361.3 910784 911905 R identified by match to PFAM protein family HMM PF02646; hypothetical protein complement(910784..911905) Chlamydophila caviae GPIC 1218479 NP_829658.1 CDS CCA00795 NC_003361.3 912085 912816 R identified by match to PFAM protein family HMM PF03597; hypothetical protein complement(912085..912816) Chlamydophila caviae GPIC 1218480 NP_829659.1 CDS CCA00796 NC_003361.3 912990 913085 R hypothetical protein complement(912990..913085) Chlamydophila caviae GPIC 1218481 NP_829660.1 CDS CCA00797 NC_003361.3 913288 914112 R identified by match to PFAM protein family HMM PF02470; hypothetical protein complement(913288..914112) Chlamydophila caviae GPIC 1218482 NP_829661.1 CDS CCA00798 NC_003361.3 914207 914302 R hypothetical protein complement(914207..914302) Chlamydophila caviae GPIC 1218483 NP_829662.1 CDS CCA00799 NC_003361.3 914459 917077 R similar to GP:6899664; identified by sequence similarity; hypothetical protein complement(914459..917077) Chlamydophila caviae GPIC 1218484 NP_829663.1 CDS CCA00800 NC_003361.3 917262 918329 R similar to GP:2246532; identified by sequence similarity; hypothetical protein complement(917262..918329) Chlamydophila caviae GPIC 1218485 NP_829664.1 CDS CCA00801 NC_003361.3 918601 919587 R identified by match to PFAM protein family HMM PF02912; hypothetical protein complement(918601..919587) Chlamydophila caviae GPIC 1218486 NP_829665.1 CDS CCA00802 NC_003361.3 919810 919920 D hypothetical protein 919810..919920 Chlamydophila caviae GPIC 1218487 NP_829666.1 CDS CCA00803 NC_003361.3 920130 921410 D similar to GB:X69464, PID:398210, PID:398211, GB:X69464, PID:398210, and PID:398211; identified by sequence similarity; hypothetical protein 920130..921410 Chlamydophila caviae GPIC 1218488 NP_829667.1 CDS CCA00804 NC_003361.3 921608 924373 D identified by match to TIGR protein family HMM TIGR01609; hypothetical protein 921608..924373 Chlamydophila caviae GPIC 1218489 NP_829668.1 CDS CCA00805 NC_003361.3 924751 926055 D similar to GB:X69464, PID:398210, PID:398211, GB:X69464, PID:398210, and PID:398211; identified by sequence similarity; hypothetical protein 924751..926055 Chlamydophila caviae GPIC 1218490 NP_829669.1 CDS CCA00806 NC_003361.3 926134 930747 R similar to GP:6172401; identified by sequence similarity; hypothetical protein complement(926134..930747) Chlamydophila caviae GPIC 1218491 NP_829670.1 CDS plsX NC_003361.3 930853 931803 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(930853..931803) Chlamydophila caviae GPIC 1218492 NP_829671.1 CDS rpmF NC_003361.3 931819 932001 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(931819..932001) Chlamydophila caviae GPIC 1218493 NP_829672.1 CDS CCA00809 NC_003361.3 932014 932475 R hypothetical protein complement(932014..932475) Chlamydophila caviae GPIC 1218494 NP_829673.1 CDS cafA NC_003361.3 932779 934311 D similar to GB:X69464, PID:398210, and PID:398211; identified by sequence similarity; ribonuclease G 932779..934311 Chlamydophila caviae GPIC 1218495 NP_829674.1 CDS CCA00811 NC_003361.3 934320 935315 D similar to GB:U00006, SP:P16528, GB:M31761, PID:146438, PID:146441, PID:396353, GB:U00096, and PID:1790449; identified by sequence similarity; glycerol-3-phosphate acyltransferase 934320..935315 Chlamydophila caviae GPIC 1218496 NP_829675.1 CDS ide NC_003361.3 935318 938131 D similar to GB:U00006, SP:P16528, GB:M31761, PID:146438, PID:146441, PID:396353, GB:U00096, and PID:1790449; identified by sequence similarity; insulinase metalloprotease 935318..938131 Chlamydophila caviae GPIC 1218497 NP_829676.1 CDS CCA00813 NC_003361.3 938139 939491 R similar to GB:U00006, SP:P16528, GB:M31761, PID:146438, PID:146441, PID:396353, GB:U00096, and PID:1790449; identified by sequence similarity; hypothetical protein complement(938139..939491) Chlamydophila caviae GPIC 1218498 NP_829677.1 CDS CCA00814 NC_003361.3 939687 939914 D hypothetical protein 939687..939914 Chlamydophila caviae GPIC 1218499 NP_829678.1 CDS ispE NC_003361.3 939894 940769 R catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(939894..940769) Chlamydophila caviae GPIC 1218500 NP_829679.1 CDS rplI NC_003361.3 940818 941336 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(940818..941336) Chlamydophila caviae GPIC 1218501 NP_829680.1 CDS rpsR NC_003361.3 941357 941605 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(941357..941605) Chlamydophila caviae GPIC 1218502 NP_829681.1 CDS rpsF NC_003361.3 941623 941961 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(941623..941961) Chlamydophila caviae GPIC 1218503 NP_829682.1 CDS pth NC_003361.3 942040 942591 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(942040..942591) Chlamydophila caviae GPIC 1218504 NP_829683.1 CDS CCA00820 NC_003361.3 942600 943157 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(942600..943157) Chlamydophila caviae GPIC 1218505 NP_829684.1 CDS glgA NC_003361.3 943644 945071 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 943644..945071 Chlamydophila caviae GPIC 1218506 NP_829685.1 CDS pgsA NC_003361.3 945053 945661 R identified by match to PFAM protein family HMM PF02466; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(945053..945661) Chlamydophila caviae GPIC 1218507 NP_829686.1 CDS glyQS NC_003361.3 945963 948983 D similar to GP:8979320; identified by sequence similarity; glycyl-tRNA synthetase, tetrameric type, alpha/beta subunits 945963..948983 Chlamydophila caviae GPIC 1218508 NP_829687.1 CDS CCA00824 NC_003361.3 949070 949516 R hypothetical protein complement(949070..949516) Chlamydophila caviae GPIC 1218509 NP_829688.1 CDS CCA00825 NC_003361.3 949628 950143 R similar to GP:7190214; identified by sequence similarity; hypothetical protein complement(949628..950143) Chlamydophila caviae GPIC 1218510 NP_829689.1 CDS CCA00826 NC_003361.3 950340 950849 R similar to GB:M59466, SP:P24153, PID:155308, GB:M59466, SP:P24153, and PID:155308; identified by sequence similarity; hypothetical protein complement(950340..950849) Chlamydophila caviae GPIC 1218511 NP_829690.1 CDS CCA00827 NC_003361.3 951006 951272 R similar to GB:M59466, SP:P24153, and PID:155308; identified by sequence similarity; hypothetical protein complement(951006..951272) Chlamydophila caviae GPIC 1218512 NP_829691.1 CDS dnaG NC_003361.3 951380 953155 R synthesizes RNA primers at the replication forks; DNA primase complement(951380..953155) Chlamydophila caviae GPIC 1218513 NP_829692.1 CDS mutS NC_003361.3 953458 955938 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 953458..955938 Chlamydophila caviae GPIC 1218514 NP_829693.1 CDS uvrC NC_003361.3 955942 957759 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 955942..957759 Chlamydophila caviae GPIC 1218515 NP_829694.1 CDS CCA00831 NC_003361.3 957768 958250 R identified by match to PFAM protein family HMM PF03780; hypothetical protein complement(957768..958250) Chlamydophila caviae GPIC 1218516 NP_829695.1 CDS CCA00832 NC_003361.3 958341 958844 D similar to GB:X72700, and PID:288292; identified by sequence similarity; hypothetical protein 958341..958844 Chlamydophila caviae GPIC 1218517 NP_829696.1 CDS rpsN NC_003361.3 958903 959208 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(958903..959208) Chlamydophila caviae GPIC 1218518 NP_829697.1 CDS rpmJ NC_003361.3 959234 959371 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(959234..959371) Chlamydophila caviae GPIC 1218519 NP_829698.1 CDS rnpA NC_003361.3 959785 960204 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 959785..960204 Chlamydophila caviae GPIC 1218520 NP_829699.1 CDS CCA00836 NC_003361.3 960146 961192 R identified by match to PFAM protein family HMM PF02834; hypothetical protein complement(960146..961192) Chlamydophila caviae GPIC 1218521 NP_829700.1 CDS CCA00837 NC_003361.3 961214 961378 D hypothetical protein 961214..961378 Chlamydophila caviae GPIC 1218522 NP_829701.1 CDS cysS NC_003361.3 961625 963055 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 961625..963055 Chlamydophila caviae GPIC 1218523 NP_829702.1 CDS lysS NC_003361.3 963052 964629 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(963052..964629) Chlamydophila caviae GPIC 1218524 NP_829703.1 CDS CCA00840 NC_003361.3 964605 964751 D hypothetical protein 964605..964751 Chlamydophila caviae GPIC 1218525 NP_829704.1 CDS CCA00841 NC_003361.3 964645 964794 D hypothetical protein 964645..964794 Chlamydophila caviae GPIC 1218526 NP_829705.1 CDS CCA00842 NC_003361.3 964859 965368 R similar to GB:L12145, SP:Q08633, PID:470687, PID:558154, GB:L12145, SP:Q08633, PID:470687, and PID:558154; identified by sequence similarity; hypothetical protein complement(964859..965368) Chlamydophila caviae GPIC 1218527 NP_829706.1 CDS CCA00843 NC_003361.3 965455 965562 R hypothetical protein complement(965455..965562) Chlamydophila caviae GPIC 1218528 NP_829707.1 CDS CCA00844 NC_003361.3 965541 966263 D similar to GB:L12145, SP:Q08633, PID:470687, and PID:558154; identified by sequence similarity; hypothetical protein 965541..966263 Chlamydophila caviae GPIC 1218529 NP_829708.1 CDS priA NC_003361.3 966215 968464 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 966215..968464 Chlamydophila caviae GPIC 1218530 NP_829709.1 CDS CCA00846 NC_003361.3 968408 969502 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(968408..969502) Chlamydophila caviae GPIC 1218531 NP_829710.1 CDS CCA00847 NC_003361.3 969553 971172 R Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; long chain fatty acid--ACP ligase complement(969553..971172) Chlamydophila caviae GPIC 1218532 NP_829711.1 CDS CCA00848 NC_003361.3 971190 971951 R similar to SP:P00808, GB:X05798, GB:V00093, SP:P00808, GB:X05798, and GB:V00093; identified by sequence similarity; hypothetical protein complement(971190..971951) Chlamydophila caviae GPIC 1218533 NP_829712.1 CDS CCA00849 NC_003361.3 972059 973039 D similar to GP:8698799, SP:P00808, GB:X05798, and GB:V00093; identified by sequence similarity; 3'(2'),5'-bisphosphate nucleotidase 972059..973039 Chlamydophila caviae GPIC 1218534 NP_829713.1 CDS CCA00850 NC_003361.3 973036 974085 R identified by match to PFAM protein family HMM PF02812; Glu/Leu/Phe/Val dehydrogenase complement(973036..974085) Chlamydophila caviae GPIC 1218535 NP_829714.1 CDS ppa NC_003361.3 974252 974902 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 974252..974902 Chlamydophila caviae GPIC 1218536 NP_829715.1 CDS CCA00852 NC_003361.3 974943 975392 R identified by match to PFAM protein family HMM PF00293; mutT/Nudix family protein complement(974943..975392) Chlamydophila caviae GPIC 1218537 NP_829716.1 CDS fabF NC_003361.3 975395 976645 R FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase complement(975395..976645) Chlamydophila caviae GPIC 1218538 NP_829717.1 CDS CCA00854 NC_003361.3 976663 977022 R similar to SP:P06565, GB:Z33876, and PID:493469; identified by sequence similarity; iojap-like protein complement(976663..977022) Chlamydophila caviae GPIC 1218539 NP_829718.1 CDS CCA00855 NC_003361.3 977081 977722 R similar to GB:M22916, GB:L10505, SP:P39790, PID:143210, PID:143702, GB:AL009126, GB:M22916, GB:L10505, SP:P39790, PID:143210, PID:143702, and GB:AL009126; identified by sequence similarity; hypothetical protein complement(977081..977722) Chlamydophila caviae GPIC 1218540 NP_829719.1 CDS CCA00856 NC_003361.3 977719 979383 R similar to GP:8547445; identified by sequence similarity; hypothetical protein complement(977719..979383) Chlamydophila caviae GPIC 1218541 NP_829720.1 CDS CCA00857 NC_003361.3 979473 980534 D similar to GP:7190185; identified by sequence similarity; hypothetical protein 979473..980534 Chlamydophila caviae GPIC 1218542 NP_829721.1 CDS miaA NC_003361.3 980525 981553 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(980525..981553) Chlamydophila caviae GPIC 1218543 NP_829722.1 CDS CCA00859 NC_003361.3 981565 981897 R identified by match to TIGR protein family HMM TIGR00377; anti-anti-sigma factor complement(981565..981897) Chlamydophila caviae GPIC 1218544 NP_829723.1 CDS CCA00860 NC_003361.3 981973 982761 D similar to GB:X72832; identified by sequence similarity; hypothetical protein 981973..982761 Chlamydophila caviae GPIC 1218545 NP_829724.1 CDS cutA NC_003361.3 982758 983090 D similar to GB:X72832, GB:J05175, SP:P16442, PID:1783208, PID:1783212, PID:1783214, PID:1783218, PID:1783226, PID:2352626, PID:340078, and PID:992596; identified by sequence similarity; divalent cation tolerance protein 982758..983090 Chlamydophila caviae GPIC 1218546 NP_829725.1 CDS CCA00862 NC_003361.3 983198 983626 D identified by match to PFAM protein family HMM PF00013; KH domain-containing protein 983198..983626 Chlamydophila caviae GPIC 1218547 NP_829726.1 CDS murC/ddlA NC_003361.3 983695 986130 R catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine and catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase complement(983695..986130) Chlamydophila caviae GPIC 1218548 NP_829727.1 CDS murG NC_003361.3 986138 987214 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(986138..987214) Chlamydophila caviae GPIC 1218549 NP_829728.1 CDS ftsW NC_003361.3 987123 988277 R similar to GB:L16784, SP:P33395, and PID:290384; identified by sequence similarity; cell division protein FtsW complement(987123..988277) Chlamydophila caviae GPIC 1218550 NP_829729.1 CDS CCA00866 NC_003361.3 988296 989024 R similar to GB:L10328, SP:P04846, GB:M12163, PID:146649, PID:290510, GB:U00096, and PID:1790093; identified by sequence similarity; LysM domain-containing protein complement(988296..989024) Chlamydophila caviae GPIC 1218551 NP_829730.1 CDS murD NC_003361.3 989021 990280 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(989021..990280) Chlamydophila caviae GPIC 1218552 NP_829731.1 CDS mraY NC_003361.3 990284 991330 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(990284..991330) Chlamydophila caviae GPIC 1218553 NP_829732.1 CDS murF NC_003361.3 991348 992694 R similar to GB:L21902, SP:P38945, and PID:347073; identified by sequence similarity; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase complement(991348..992694) Chlamydophila caviae GPIC 1218554 NP_829733.1 CDS CCA00870 NC_003361.3 993075 994595 D similar to GB:L21902, SP:P38945, and PID:347073; identified by sequence similarity; molecular chaperone GroEL 993075..994595 Chlamydophila caviae GPIC 1218555 NP_829734.1 CDS CCA00871 NC_003361.3 994981 995862 D similar to GB:L21902, SP:P38945, PID:347073, GB:L21902, SP:P38945, and PID:347073; identified by sequence similarity; hypothetical protein 994981..995862 Chlamydophila caviae GPIC 1218556 NP_829735.1 CDS CCA00872 NC_003361.3 995912 996133 R similar to GB:L21902, SP:P38945, and PID:347073; identified by sequence similarity; hypothetical protein complement(995912..996133) Chlamydophila caviae GPIC 1218557 NP_829736.1 CDS efp-1 NC_003361.3 996192 996764 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(996192..996764) Chlamydophila caviae GPIC 1218558 NP_829737.1 CDS CCA00874 NC_003361.3 996964 997839 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 996964..997839 Chlamydophila caviae GPIC 1218559 NP_829738.1 CDS tkt NC_003361.3 997833 999830 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(997833..999830) Chlamydophila caviae GPIC 1218560 NP_829739.1 CDS alaS NC_003361.3 1000094 1002721 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1000094..1002721 Chlamydophila caviae GPIC 1218561 NP_829740.1 CDS mfd NC_003361.3 1002691 1005948 D identified by match to PFAM protein family HMM PF03158; transcription-repair coupling factor 1002691..1005948 Chlamydophila caviae GPIC 1218562 NP_829741.1 CDS hemE NC_003361.3 1005958 1006959 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1005958..1006959 Chlamydophila caviae GPIC 1218563 NP_829742.1 CDS hemN NC_003361.3 1006932 1008308 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1006932..1008308 Chlamydophila caviae GPIC 1218564 NP_829743.1 CDS CCA00880 NC_003361.3 1008305 1009573 D catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase 1008305..1009573 Chlamydophila caviae GPIC 1218565 NP_829744.1 CDS CCA00881 NC_003361.3 1009544 1012045 R similar to GP:7189892; identified by sequence similarity; hypothetical protein complement(1009544..1012045) Chlamydophila caviae GPIC 1218566 NP_829745.1 CDS hctA NC_003361.3 1012462 1012839 D histone H1-like protein HC1 1012462..1012839 Chlamydophila caviae GPIC 1218567 NP_829746.1 CDS CCA00883 NC_003361.3 1013066 1014271 D similar to GP:8979259; identified by sequence similarity; RNA methyltransferase 1013066..1014271 Chlamydophila caviae GPIC 1218568 NP_829747.1 CDS yajC NC_003361.3 1014342 1014695 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1014342..1014695 Chlamydophila caviae GPIC 1218569 NP_829748.1 CDS nqrF NC_003361.3 1014815 1016110 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1014815..1016110 Chlamydophila caviae GPIC 1218570 NP_829749.1 CDS CCA00887 NC_003361.3 1026516 1028933 D similar to GB:L25079, SP:P42823, and PID:529424; identified by sequence similarity; DNA translocase FtsK 1026516..1028933 Chlamydophila caviae GPIC 1218575 NP_829750.1 CDS CCA00888 NC_003361.3 1028938 1029726 D similar to GB:X75338, and PID:406607; identified by sequence similarity; metal dependent hydrolase 1028938..1029726 Chlamydophila caviae GPIC 1218576 NP_829751.1 CDS CCA00889 NC_003361.3 1029723 1030385 D similar to GP:8979252; identified by sequence similarity; SET domain-containing protein 1029723..1030385 Chlamydophila caviae GPIC 1218577 NP_829752.1 CDS CCA00890 NC_003361.3 1030390 1030842 R similar to GB:X75338, PID:406607, GB:X75338, and PID:406607; identified by sequence similarity; hypothetical protein complement(1030390..1030842) Chlamydophila caviae GPIC 1218578 NP_829753.1 CDS CCA00891 NC_003361.3 1030856 1032229 R similar to GB:X75338, and PID:406607; identified by sequence similarity; sodium/alanine symporter family protein complement(1030856..1032229) Chlamydophila caviae GPIC 1218579 NP_829754.1 CDS CCA00892 NC_003361.3 1032342 1032986 R similar to GB:X75338, and PID:406607; identified by sequence similarity; hypothetical protein complement(1032342..1032986) Chlamydophila caviae GPIC 1218580 NP_829755.1 CDS CCA00893 NC_003361.3 1033243 1034610 D similar to GB:X75338, and PID:406607; identified by sequence similarity; hypothetical protein 1033243..1034610 Chlamydophila caviae GPIC 1218581 NP_829756.1 CDS ribH NC_003361.3 1034628 1035092 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(1034628..1035092) Chlamydophila caviae GPIC 1218582 NP_829757.1 CDS ribA/B NC_003361.3 1035105 1036364 R bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein complement(1035105..1036364) Chlamydophila caviae GPIC 1218583 NP_829758.1 CDS ribD NC_003361.3 1036450 1037556 R identified by match to PFAM protein family HMM PF02579; riboflavin biosynthesis protein RibD complement(1036450..1037556) Chlamydophila caviae GPIC 1218584 NP_829759.1 CDS serS NC_003361.3 1037600 1038880 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1037600..1038880 Chlamydophila caviae GPIC 1218585 NP_829760.1 CDS CCA00898 NC_003361.3 1038945 1039688 D similar to GB:L20805, and PID:305386; identified by sequence similarity; hypothetical protein 1038945..1039688 Chlamydophila caviae GPIC 1218586 NP_829761.1 CDS cadA NC_003361.3 1039704 1041677 D identified by match to PFAM protein family HMM PF02442; cadmium-translocating P-type ATPase 1039704..1041677 Chlamydophila caviae GPIC 1218587 NP_829762.1 CDS rodA NC_003361.3 1041680 1042819 R similar to GB:L20805, and PID:305386; identified by sequence similarity; cell shape-determining protein MrdB complement(1041680..1042819) Chlamydophila caviae GPIC 1218588 NP_829763.1 CDS CCA00901 NC_003361.3 1042855 1043445 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 1042855..1043445 Chlamydophila caviae GPIC 1218589 NP_829764.1 CDS CCA00902 NC_003361.3 1043401 1043937 R similar to GB:L20805, and PID:305386; identified by sequence similarity; hypothetical protein complement(1043401..1043937) Chlamydophila caviae GPIC 1218590 NP_829765.1 CDS gpmA NC_003361.3 1044828 1045511 D catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1044828..1045511 Chlamydophila caviae GPIC 1218592 NP_829766.1 CDS CCA00905 NC_003361.3 1045466 1046623 D similar to GB:L20805, and PID:305386; identified by sequence similarity; nifS protein 1045466..1046623 Chlamydophila caviae GPIC 1218593 NP_829767.1 CDS CCA00906 NC_003361.3 1046620 1047441 D similar to GB:L20805, and PID:305386; identified by sequence similarity; NifU protein 1046620..1047441 Chlamydophila caviae GPIC 1218594 NP_829768.1 CDS CCA00907 NC_003361.3 1047545 1048558 D similar to GB:S85353, and PID:246437; identified by sequence similarity; type III secretion system protein 1047545..1048558 Chlamydophila caviae GPIC 1218595 NP_829769.1 CDS CCA00908 NC_003361.3 1048582 1049133 D similar to GB:S85353, and PID:246437; identified by sequence similarity; hypothetical protein 1048582..1049133 Chlamydophila caviae GPIC 1218596 NP_829770.1 CDS CCA00909 NC_003361.3 1049130 1050434 D involved in type III protein export; type III secretion system ATPase 1049130..1050434 Chlamydophila caviae GPIC 1218597 NP_829771.1 CDS CCA00910 NC_003361.3 1050427 1050786 D similar to GB:S85353, and PID:246437; identified by sequence similarity; hypothetical protein 1050427..1050786 Chlamydophila caviae GPIC 1218598 NP_829772.1 CDS CCA00911 NC_003361.3 1050806 1052188 D similar to GB:D28770, PID:523232, PID:523234, and PID:2335043; identified by sequence similarity; UTP-glucose-1-phosphate uridylyltransferase 1050806..1052188 Chlamydophila caviae GPIC 1218599 NP_829773.1 CDS gpsA NC_003361.3 1052185 1053189 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1052185..1053189 Chlamydophila caviae GPIC 1218600 NP_829774.1 CDS CCA00913 NC_003361.3 1053322 1054356 D similar to GB:D28770, PID:523232, PID:523234, and PID:2335043; identified by sequence similarity; major outer membrane protein 1053322..1054356 Chlamydophila caviae GPIC 1218601 NP_829775.1 CDS CCA00914 NC_003361.3 1054353 1055519 R similar to GB:M35514, SP:P13380, GB:M97156, GB:M97157, GB:U02559, GB:U02560, and PID:153821; identified by sequence similarity; hypothetical protein complement(1054353..1055519) Chlamydophila caviae GPIC 1218602 NP_829776.1 CDS CCA00915 NC_003361.3 1055528 1057771 R identified by match to PFAM protein family HMM PF03081; hypothetical protein complement(1055528..1057771) Chlamydophila caviae GPIC 1218603 NP_829777.1 CDS pckA NC_003361.3 1057894 1059696 R catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase complement(1057894..1059696) Chlamydophila caviae GPIC 1218604 NP_829778.1 CDS mreB NC_003361.3 1059693 1060793 R similar to GB:X77864, PID:951038, and PID:1333728; identified by sequence similarity; rod shape-determining protein MreB complement(1059693..1060793) Chlamydophila caviae GPIC 1218605 NP_829779.1 CDS helZ NC_003361.3 1060798 1064298 R similar to GB:X77864, PID:951038, and PID:1333728; identified by sequence similarity; SNF2 family helicase complement(1060798..1064298) Chlamydophila caviae GPIC 1218606 NP_829780.1 CDS tig NC_003361.3 1064594 1065919 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1064594..1065919 Chlamydophila caviae GPIC 1218607 NP_829781.1 CDS clpP NC_003361.3 1066098 1066709 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1066098..1066709 Chlamydophila caviae GPIC 1218608 NP_829782.1 CDS clpX NC_003361.3 1066719 1067984 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1066719..1067984 Chlamydophila caviae GPIC 1218609 NP_829783.1 CDS CCA00922 NC_003361.3 1068014 1069246 D similar to GB:M21161, SP:P13421, and PID:152864; identified by sequence similarity; poly(A) polymerase 1068014..1069246 Chlamydophila caviae GPIC 1218610 NP_829784.1 CDS engA NC_003361.3 1069368 1070792 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1069368..1070792 Chlamydophila caviae GPIC 1218611 NP_829785.1 CDS CCA00924 NC_003361.3 1070867 1071397 D hypothetical protein 1070867..1071397 Chlamydophila caviae GPIC 1218612 NP_829786.1 CDS secA NC_003361.3 1071456 1074368 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(1071456..1074368) Chlamydophila caviae GPIC 1218613 NP_829787.1 CDS CCA00926 NC_003361.3 1074556 1075881 R similar to GB:M88334, SP:P25526, PID:147901, GB:U00096, and PID:1789015; identified by sequence similarity; hypothetical protein complement(1074556..1075881) Chlamydophila caviae GPIC 1218614 NP_829788.1 CDS psd NC_003361.3 1075947 1076846 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(1075947..1076846) Chlamydophila caviae GPIC 1218615 NP_829789.1 CDS trmE NC_003361.3 1077003 1078334 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1077003..1078334 Chlamydophila caviae GPIC 1218616 NP_829790.1 CDS nth NC_003361.3 1078324 1078968 D similar to SP:P39788; identified by sequence similarity; endonuclease III 1078324..1078968 Chlamydophila caviae GPIC 1218617 NP_829791.1 CDS brnQ NC_003361.3 1079131 1080360 D identified by match to PFAM protein family HMM PF02665; branched-chain amino acid transport system carrier protein BrnQ 1079131..1080360 Chlamydophila caviae GPIC 1218618 NP_829792.1 CDS CCA00931 NC_003361.3 1080395 1084012 D similar to GB:M57961, and PID:149570; identified by sequence similarity; Snf2/Rad54 family helicase 1080395..1084012 Chlamydophila caviae GPIC 1218619 NP_829793.1 CDS CCA00932 NC_003361.3 1084035 1084502 R similar to GB:M57961, and PID:149570; identified by sequence similarity; hypothetical protein complement(1084035..1084502) Chlamydophila caviae GPIC 1218620 NP_829794.1 CDS CCA00933 NC_003361.3 1084766 1086154 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1084766..1086154 Chlamydophila caviae GPIC 1218621 NP_829795.1 CDS lipA NC_003361.3 1086151 1087089 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1086151..1087089 Chlamydophila caviae GPIC 1218622 NP_829796.1 CDS sctJ NC_003361.3 1087271 1088263 D similar to GB:L13940, PID:295432, and SP:P54297; identified by sequence similarity; type III secretion protein SctJ 1087271..1088263 Chlamydophila caviae GPIC 1218623 NP_829797.1 CDS CCA00936 NC_003361.3 1088263 1089096 D similar to GB:L13940, PID:295432, SP:P54297, GB:L13940, PID:295432, and SP:P54297; identified by sequence similarity; hypothetical protein 1088263..1089096 Chlamydophila caviae GPIC 1218624 NP_829798.1 CDS sctL NC_003361.3 1089263 1089952 D similar to GB:X05302; identified by sequence similarity; type III secretion system protein 1089263..1089952 Chlamydophila caviae GPIC 1218625 NP_829799.1 CDS sctR NC_003361.3 1089967 1090878 D similar to GB:X05302; identified by sequence similarity; type III secretion system protein 1089967..1090878 Chlamydophila caviae GPIC 1218626 NP_829800.1 CDS sctS NC_003361.3 1090888 1091172 D similar to GB:X05302; identified by sequence similarity; type III secretion inner membrane protein SctS 1090888..1091172 Chlamydophila caviae GPIC 1218627 NP_829801.1 CDS sctT NC_003361.3 1091179 1092048 D identified by match to PFAM protein family HMM PF02537; type III secretion inner membrane protein SctT 1091179..1092048 Chlamydophila caviae GPIC 1218628 NP_829802.1 CDS CCA00941 NC_003361.3 1092148 1092597 R identified by match to PFAM protein family HMM PF03208; hypothetical protein complement(1092148..1092597) Chlamydophila caviae GPIC 1218629 NP_829803.1 CDS CCA00942 NC_003361.3 1092691 1093695 R identified by match to TIGR protein family HMM TIGR01529; hypothetical protein complement(1092691..1093695) Chlamydophila caviae GPIC 1218630 NP_829804.1 CDS CCA00943 NC_003361.3 1093698 1094240 R hypothetical protein complement(1093698..1094240) Chlamydophila caviae GPIC 1218631 NP_829805.1 CDS CCA00944 NC_003361.3 1094225 1094662 R similar to GB:M34239, SP:P33119, GB:M80338, PID:144973, and PID:144977; identified by sequence similarity; hypothetical protein complement(1094225..1094662) Chlamydophila caviae GPIC 1218632 NP_829806.1 CDS CCA00945 NC_003361.3 1094671 1095048 R identified by match to TIGR protein family HMM TIGR01710; hypothetical protein complement(1094671..1095048) Chlamydophila caviae GPIC 1218633 NP_829807.1 CDS gspF NC_003361.3 1095068 1096243 R similar to GB:L05176, SP:Q02540, and PID:151181; identified by sequence similarity; general secretion pathway protein F complement(1095068..1096243) Chlamydophila caviae GPIC 1218634 NP_829808.1 CDS gspE NC_003361.3 1096258 1097751 R similar to GB:L05176, SP:Q02540, and PID:151181; identified by sequence similarity; general secretion pathway protein E complement(1096258..1097751) Chlamydophila caviae GPIC 1218635 NP_829809.1 CDS gspD NC_003361.3 1097741 1100002 R similar to GB:X73124, SP:P39587, PID:413943, and GB:AL009126; identified by sequence similarity; general secretion pathway protein D complement(1097741..1100002) Chlamydophila caviae GPIC 1218636 NP_829810.1 CDS CCA00949 NC_003361.3 1100003 1101316 R hypothetical protein complement(1100003..1101316) Chlamydophila caviae GPIC 1218637 NP_829811.1 CDS CCA00950 NC_003361.3 1101437 1102507 R similar to GB:X73124, SP:P39587, PID:413943, and GB:AL009126; identified by sequence similarity; proline dipeptidase complement(1101437..1102507) Chlamydophila caviae GPIC 1218638 NP_829812.1 CDS mutL NC_003361.3 1102511 1104253 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(1102511..1104253) Chlamydophila caviae GPIC 1218639 NP_829813.1 CDS sycD NC_003361.3 1104481 1105164 D similar to GP:7190892; identified by sequence similarity; type III secretion chaperone SycD 1104481..1105164 Chlamydophila caviae GPIC 1218640 NP_829814.1 CDS CCA00953 NC_003361.3 1105188 1105586 D similar to GB:L25079, SP:P42823, and PID:529424; identified by sequence similarity; hypothetical protein 1105188..1105586 Chlamydophila caviae GPIC 1218641 NP_829815.1 CDS CCA00954 NC_003361.3 1105624 1107108 D similar to GP:7190894; identified by sequence similarity; hypothetical protein 1105624..1107108 Chlamydophila caviae GPIC 1218642 NP_829816.1 CDS CCA00955 NC_003361.3 1107138 1108454 D similar to GP:7190895; identified by sequence similarity; hypothetical protein 1107138..1108454 Chlamydophila caviae GPIC 1218643 NP_829817.1 CDS CCA00956 NC_003361.3 1108533 1109438 R identified by match to PFAM protein family HMM PF02592; hypothetical protein complement(1108533..1109438) Chlamydophila caviae GPIC 1218644 NP_829818.1 CDS thrS NC_003361.3 1109660 1111567 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1109660..1111567 Chlamydophila caviae GPIC 1218645 NP_829819.1 CDS CCA00958 NC_003361.3 1111598 1112365 D similar to GB:M99391, and PID:152478; identified by sequence similarity; chromosome partitioning ATPase ParA 1111598..1112365 Chlamydophila caviae GPIC 1218646 NP_829820.1 CDS CCA00959 NC_003361.3 1112370 1113122 D similar to GB:M55546, SP:P23988, PID:154233, GB:L04791, SP:Q03468, and PID:182181; identified by sequence similarity; hypothetical protein 1112370..1113122 Chlamydophila caviae GPIC 1218647 NP_829821.1 CDS CCA00960 NC_003361.3 1113126 1113680 D similar to GB:M55546, SP:P23988, and PID:154233; identified by sequence similarity; hypothetical protein 1113126..1113680 Chlamydophila caviae GPIC 1218648 NP_829822.1 CDS trpS NC_003361.3 1113691 1114728 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1113691..1114728 Chlamydophila caviae GPIC 1218649 NP_829823.1 CDS uvrB NC_003361.3 1114741 1116711 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1114741..1116711 Chlamydophila caviae GPIC 1218650 NP_829824.1 CDS eno NC_003361.3 1116890 1118164 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1116890..1118164 Chlamydophila caviae GPIC 1218651 NP_829825.1 CDS CCA00964 NC_003361.3 1118413 1120320 D similar to GB:U00006, SP:P16528, GB:M31761, PID:146438, PID:146441, PID:396353, GB:U00096, and PID:1790449; identified by sequence similarity; regulatory protein 1118413..1120320 Chlamydophila caviae GPIC 1218652 NP_829826.1 CDS CCA00965 NC_003361.3 1120317 1122140 D similar to GB:U00006, SP:P16528, GB:M31761, PID:146438, PID:146441, PID:396353, GB:U00096, and PID:1790449; identified by sequence similarity; hypothetical protein 1120317..1122140 Chlamydophila caviae GPIC 1218653 NP_829827.1 CDS CCA00966 NC_003361.3 1122718 1125609 D identified by match to PFAM protein family HMM PF02889; hypothetical protein 1122718..1125609 Chlamydophila caviae GPIC 1218654 NP_829828.1 CDS sdhB NC_003361.3 1125606 1126397 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(1125606..1126397) Chlamydophila caviae GPIC 1218655 NP_829829.1 CDS sdhA NC_003361.3 1126412 1128295 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(1126412..1128295) Chlamydophila caviae GPIC 1218656 NP_829830.1 CDS CCA00969 NC_003361.3 1128300 1129193 R similar to GB:X56071, PID:507063, and SP:P51603; identified by sequence similarity; succinate dehydrogenase, cytochrome b558 subunit complement(1128300..1129193) Chlamydophila caviae GPIC 1218657 NP_829831.1 CDS CCA00970 NC_003361.3 1129289 1130089 R identified by match to PFAM protein family HMM PF01026; TatD family deoxyribonuclease complement(1129289..1130089) Chlamydophila caviae GPIC 1218658 NP_829832.1 CDS CCA00971 NC_003361.3 1130257 1132395 R identified by match to PFAM protein family HMM PF02411; thiol:disulfide interchange protein DsbD complement(1130257..1132395) Chlamydophila caviae GPIC 1218659 NP_829833.1 CDS CCA00972 NC_003361.3 1132565 1133263 D similar to GB:M59466, SP:P24153, and PID:155308; identified by sequence similarity; MotA/TolQ/ExbB proton channel family protein 1132565..1133263 Chlamydophila caviae GPIC 1218660 NP_829834.1 CDS CCA00973 NC_003361.3 1133260 1133667 D similar to GP:7190914; identified by sequence similarity; ExbD/TolR family protein 1133260..1133667 Chlamydophila caviae GPIC 1218661 NP_829835.1 CDS CCA00974 NC_003361.3 1133670 1134431 D similar to GP:8979156; identified by sequence similarity; hypothetical protein 1133670..1134431 Chlamydophila caviae GPIC 1218662 NP_829836.1 CDS tolB NC_003361.3 1134451 1135734 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1134451..1135734 Chlamydophila caviae GPIC 1218663 NP_829837.1 CDS CCA00976 NC_003361.3 1135745 1136320 D identified by match to PFAM protein family HMM PF00691; peptidoglycan-associated lipoprotein 1135745..1136320 Chlamydophila caviae GPIC 1218664 NP_829838.1 CDS CCA00977 NC_003361.3 1136310 1136927 D similar to GB:X76500, and PID:520921; identified by sequence similarity; LysM domain-containing protein 1136310..1136927 Chlamydophila caviae GPIC 1218665 NP_829839.1 CDS CCA00978 NC_003361.3 1137026 1137424 D similar to GB:X76500, and PID:520921; identified by sequence similarity; hypothetical protein 1137026..1137424 Chlamydophila caviae GPIC 1218666 NP_829840.1 CDS CCA00979 NC_003361.3 1137421 1138011 R similar to GP:5457310; identified by sequence similarity; anti-oxidant AhpCTSA family protein complement(1137421..1138011) Chlamydophila caviae GPIC 1218667 NP_829841.1 CDS groEL NC_003361.3 1138273 1139883 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; molecular chaperone GroEL complement(1138273..1139883) Chlamydophila caviae GPIC 1218668 NP_829842.1 CDS CCA00981 NC_003361.3 1139994 1141226 R similar to GP:7190922, and GP:7190922; identified by sequence similarity; hypothetical protein complement(1139994..1141226) Chlamydophila caviae GPIC 1218669 NP_829843.1 CDS CCA00982 NC_003361.3 1141462 1142082 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 1141462..1142082 Chlamydophila caviae GPIC 1218670 NP_829844.1 CDS CCA00983 NC_003361.3 1142065 1142298 R similar to GB:D10387, SP:P27735, PID:216968, and PID:47275; identified by sequence similarity; hypothetical protein complement(1142065..1142298) Chlamydophila caviae GPIC 1218671 NP_829845.1 CDS ung NC_003361.3 1142295 1142984 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(1142295..1142984) Chlamydophila caviae GPIC 1218672 NP_829846.1 CDS pcrA NC_003361.3 1143095 1145008 D similar to GB:D10387, SP:P27735, PID:216968, and PID:47275; identified by sequence similarity; ATP-dependent helicase PcrA 1143095..1145008 Chlamydophila caviae GPIC 1218673 NP_829847.1 CDS CCA00986 NC_003361.3 1145011 1146282 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 1145011..1146282 Chlamydophila caviae GPIC 1218674 NP_829848.1 CDS CCA00987 NC_003361.3 1146304 1147101 R similar to GB:M94110, SP:Q04441, and PID:142786; identified by sequence similarity; hypothetical protein complement(1146304..1147101) Chlamydophila caviae GPIC 1218675 NP_829849.1 CDS topA NC_003361.3 1147744 1150329 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I/SWI domain fusion protein 1147744..1150329 Chlamydophila caviae GPIC 1218676 NP_829850.1 CDS CCA00989 NC_003361.3 1150305 1151324 R similar to GB:M20181, GB:M13239, SP:P08407, GB:M20146, and PID:147094; identified by sequence similarity; nifR3 family TIM-barrel protein complement(1150305..1151324) Chlamydophila caviae GPIC 1218677 NP_829851.1 CDS CCA00990 NC_003361.3 1151303 1151599 R similar to GB:M20181, GB:M13239, SP:P08407, GB:M20146, and PID:147094; identified by sequence similarity; hypothetical protein complement(1151303..1151599) Chlamydophila caviae GPIC 1218678 NP_829852.1 CDS CCA00991 NC_003361.3 1151696 1153096 D similar to GB:L12145, SP:Q08633, PID:470687, and PID:558154; identified by sequence similarity; hypothetical protein 1151696..1153096 Chlamydophila caviae GPIC 1218679 NP_829853.1 CDS CCA00992 NC_003361.3 1153093 1153677 D similar to GB:L12145, SP:Q08633, PID:470687, and PID:558154; identified by sequence similarity; hypothetical protein 1153093..1153677 Chlamydophila caviae GPIC 1218680 NP_829854.1 CDS CCA00993 NC_003361.3 1153668 1154945 D similar to GB:L12145, SP:Q08633, PID:470687, and PID:558154; identified by sequence similarity; hypothetical protein 1153668..1154945 Chlamydophila caviae GPIC 1218681 NP_829855.1 CDS CCA00994 NC_003361.3 1154948 1155490 D similar to GB:L12145, SP:Q08633, PID:470687, and PID:558154; identified by sequence similarity; 5-formyltetrahydrofolate cyclo-ligase 1154948..1155490 Chlamydophila caviae GPIC 1218682 NP_829856.1 CDS recA NC_003361.3 1155893 1156945 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1155893..1156945 Chlamydophila caviae GPIC 1218683 NP_829857.1 CDS CCA00996 NC_003361.3 1157003 1157731 R similar to GP:7190927; identified by sequence similarity; coenzyme PQQ synthesis protein c complement(1157003..1157731) Chlamydophila caviae GPIC 1218684 NP_829858.1 CDS CCA00997 NC_003361.3 1157748 1158482 R similar to GP:8979133; identified by sequence similarity; hypothetical protein complement(1157748..1158482) Chlamydophila caviae GPIC 1218685 NP_829859.1 CDS folA NC_003361.3 1158454 1158942 R identified by match to PFAM protein family HMM PF00186; dihydrofolate reductase complement(1158454..1158942) Chlamydophila caviae GPIC 1218686 NP_829860.1 CDS folKP NC_003361.3 1158935 1160278 R identified by match to TIGR protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(1158935..1160278) Chlamydophila caviae GPIC 1218687 NP_829861.1 CDS folB NC_003361.3 1160275 1160616 R similar to EGAD|163839; identified by sequence similarity; dihydroneopterin aldolase complement(1160275..1160616) Chlamydophila caviae GPIC 1218688 NP_829862.1 CDS rpoD NC_003361.3 1160685 1162403 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor complement(1160685..1162403) Chlamydophila caviae GPIC 1218689 NP_829863.1 CDS CCA01002 NC_003361.3 1162514 1163719 R identified by match to TIGR protein family HMM TIGR01000; hypothetical protein complement(1162514..1163719) Chlamydophila caviae GPIC 1218690 NP_829864.1 CDS rpsT NC_003361.3 1164009 1164305 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1164009..1164305 Chlamydophila caviae GPIC 1218691 NP_829865.1 CDS CCA01004 NC_003361.3 1164320 1165240 D similar to GB:M22916, GB:L10505, SP:P39790, PID:143210, PID:143702, and GB:AL009126; identified by sequence similarity; hypothetical protein 1164320..1165240 Chlamydophila caviae GPIC 1218692 NP_829866.1 CDS recD NC_003361.3 1165264 1166769 R similar to GP:8979125; identified by sequence similarity; exodeoxyribonuclease V subunit alpha complement(1165264..1166769) Chlamydophila caviae GPIC 1218693 NP_829867.1 CDS CCA01006 NC_003361.3 1166785 1168629 R identified by match to PFAM protein family HMM PF02616; hypothetical protein complement(1166785..1168629) Chlamydophila caviae GPIC 1218694 NP_829868.1 CDS tctD NC_003361.3 1168830 1169531 D identified by match to TIGR protein family HMM TIGR01387; transcriptional regulator 1168830..1169531 Chlamydophila caviae GPIC 1218695 NP_829869.1 CDS CCA01008 NC_003361.3 1169603 1170217 D identified by match to PFAM protein family HMM PF00132; LpxA family transferase 1169603..1170217 Chlamydophila caviae GPIC 1218696 NP_829870.1 CDS ispA NC_003361.3 1170233 1171114 D similar to SP:O66126, and GB:X72832; identified by sequence similarity; geranyltranstransferase 1170233..1171114 Chlamydophila caviae GPIC 1218697 NP_829871.1 CDS CCA01010 NC_003361.3 1171223 1171477 R similar to GP:7190947, and GP:7190947; identified by sequence similarity; hypothetical protein complement(1171223..1171477) Chlamydophila caviae GPIC 1218698 NP_829872.1 CDS CCA01011 NC_003361.3 1171560 1173152 R similar to GB:M35514, SP:P13380, GB:M97156, GB:M97157, GB:U02559, GB:U02560, and PID:153821; identified by sequence similarity; hypothetical protein complement(1171560..1173152) Chlamydophila caviae GPIC 1218699 NP_829873.1 CDS CCA01012 NC_003361.3 1173237 1173386 D hypothetical protein 1173237..1173386 Chlamydophila caviae GPIC 1218700 NP_829874.1 CDS CCAA00001 NC_004720.1 675 1415 D similar to PIR:H39999, GB:L04791, SP:Q03468, and PID:182181; identified by sequence similarity; putative; virulence protein pGP6-D 675..1415 Chlamydophila caviae GPIC 1217679 NP_829875.1 CDS CCAA00002 NC_004720.1 1638 2561 D similar to SP:P10561, GB:X64318, GB:U26173, GB:S79880, PID:1237118, and PID:30956; identified by sequence similarity; putative; virulence plasmid integrase pGP7-D 1638..2561 Chlamydophila caviae GPIC 1217680 NP_829876.1 CDS CCAA00003 NC_004720.1 2622 3629 R identified by match to PFAM protein family HMM PF00589; virulence plasmid integrase pGP8-D complement(2622..3629) Chlamydophila caviae GPIC 1217681 NP_829877.1 CDS CCAA00004 NC_004720.1 3733 5109 D similar to SP:P10555; identified by sequence similarity; putative; virulence plasmid replicative DNA helicase pGP1-D 3733..5109 Chlamydophila caviae GPIC 1217682 NP_829878.1 CDS CCAA00005 NC_004720.1 5103 6146 D similar to GB:M60502, GB:M24355, GB:M96943, GB:M60500, GB:L01089, GB:M60494, GB:M60499, GB:M60501, GB:M60503, GB:M60495, GB:L01090, SP:P20930, and PID:190394; identified by sequence similarity; putative; virulence protein pGP2-D 5103..6146 Chlamydophila caviae GPIC 1217683 NP_829879.1 CDS CCAA00006 NC_004720.1 6201 6995 D similar to SP:P10557, GB:X52947, GB:M65188, SP:P17302, PID:181209, and PID:29917; identified by sequence similarity; putative; virulence protein pGP3-D 6201..6995 Chlamydophila caviae GPIC 1217684 NP_829880.1 CDS CCAA00007 NC_004720.1 7093 7401 D similar to GP:1124830, GB:X06869, SP:P08736, PID:157401, and PID:7915; identified by sequence similarity; putative; virulence protein pGP4-D 7093..7401 Chlamydophila caviae GPIC 1217685 CCA_t01 tRNA CCA_t01 NC_003361.3 5212 5284 R tRNA-Ala complement(5212..5284) Chlamydophila caviae GPIC 3365471 CCA_t02 tRNA CCA_t02 NC_003361.3 31667 31739 D tRNA-Arg 31667..31739 Chlamydophila caviae GPIC 3365434 CCA_t03 tRNA CCA_t03 NC_003361.3 52238 52310 D tRNA-Thr 52238..52310 Chlamydophila caviae GPIC 3365435 CCA_t04 tRNA CCA_t04 NC_003361.3 54398 54470 R tRNA-Lys complement(54398..54470) Chlamydophila caviae GPIC 3365470 CCA_t05 tRNA CCA_t05 NC_003361.3 54497 54571 R tRNA-Glu complement(54497..54571) Chlamydophila caviae GPIC 3365469 CCA_t06 tRNA CCA_t06 NC_003361.3 57735 57805 R tRNA-Gly complement(57735..57805) Chlamydophila caviae GPIC 3365468 CCA_t07 tRNA CCA_t07 NC_003361.3 98333 98416 R tRNA-Leu complement(98333..98416) Chlamydophila caviae GPIC 3365467 CCA_t08 tRNA CCA_t08 NC_003361.3 122375 122457 D tRNA-Leu 122375..122457 Chlamydophila caviae GPIC 3365436 CCA_t09 tRNA CCA_t09 NC_003361.3 130116 130203 D tRNA-Ser 130116..130203 Chlamydophila caviae GPIC 3365437 CCA_t10 tRNA CCA_t10 NC_003361.3 159272 159353 D tRNA-Leu 159272..159353 Chlamydophila caviae GPIC 3365438 CCA_t11 tRNA CCA_t11 NC_003361.3 162068 162141 R tRNA-Arg complement(162068..162141) Chlamydophila caviae GPIC 3365466 CCA_t12 tRNA CCA_t12 NC_003361.3 168077 168159 R tRNA-Leu complement(168077..168159) Chlamydophila caviae GPIC 3365465 CCA_t13 tRNA CCA_t13 NC_003361.3 209996 210068 D tRNA-Phe 209996..210068 Chlamydophila caviae GPIC 3365439 CCA_t14 tRNA CCA_t14 NC_003361.3 214462 214548 D tRNA-Ser 214462..214548 Chlamydophila caviae GPIC 3365440 CCA_t15 tRNA CCA_t15 NC_003361.3 349998 350084 R tRNA-Ser complement(349998..350084) Chlamydophila caviae GPIC 3365464 CCA_t16 tRNA CCA_t16 NC_003361.3 428232 428305 R tRNA-Arg complement(428232..428305) Chlamydophila caviae GPIC 3365463 CCA_t17 tRNA CCA_t17 NC_003361.3 482104 482178 R tRNA-Pro complement(482104..482178) Chlamydophila caviae GPIC 3365462 CCA_t18 tRNA CCA_t18 NC_003361.3 590122 590195 R tRNA-Asp complement(590122..590195) Chlamydophila caviae GPIC 3365461 CCA_t19 tRNA CCA_t19 NC_003361.3 590199 590271 R tRNA-Val complement(590199..590271) Chlamydophila caviae GPIC 3365460 CCA_t20 tRNA CCA_t20 NC_003361.3 594018 594090 D tRNA-Thr 594018..594090 Chlamydophila caviae GPIC 3365441 CCA_t21 tRNA CCA_t21 NC_003361.3 594097 594179 D tRNA-Tyr 594097..594179 Chlamydophila caviae GPIC 3365442 CCA_t22 tRNA CCA_t22 NC_003361.3 673902 673975 R tRNA-Ile complement(673902..673975) Chlamydophila caviae GPIC 3365459 CCA_t23 tRNA CCA_t23 NC_003361.3 673981 674053 R tRNA-Ala complement(673981..674053) Chlamydophila caviae GPIC 3365458 CCA_t24 tRNA CCA_t24 NC_003361.3 694648 694721 R tRNA-Met complement(694648..694721) Chlamydophila caviae GPIC 3365457 CCA_t25 tRNA CCA_t25 NC_003361.3 694742 694814 R tRNA-Met complement(694742..694814) Chlamydophila caviae GPIC 3365456 CCA_t26 tRNA CCA_t26 NC_003361.3 738275 738346 D tRNA-Asn 738275..738346 Chlamydophila caviae GPIC 3365443 CCA_t27 tRNA CCA_t27 NC_003361.3 806326 806398 R tRNA-Trp complement(806326..806398) Chlamydophila caviae GPIC 3365455 CCA_t28 tRNA CCA_t28 NC_003361.3 807679 807750 R tRNA-Thr complement(807679..807750) Chlamydophila caviae GPIC 3365454 CCA_t29 tRNA CCA_t29 NC_003361.3 809848 809920 D tRNA-Met 809848..809920 Chlamydophila caviae GPIC 3365444 CCA_t30 tRNA CCA_t30 NC_003361.3 844984 845065 R tRNA-Leu complement(844984..845065) Chlamydophila caviae GPIC 3365453 CCA_t31 tRNA CCA_t31 NC_003361.3 879100 879184 R tRNA-Ser complement(879100..879184) Chlamydophila caviae GPIC 3365452 CCA_t32 tRNA CCA_t32 NC_003361.3 883805 883878 D tRNA-Val 883805..883878 Chlamydophila caviae GPIC 3365445 CCA_t33 tRNA CCA_t33 NC_003361.3 943399 943470 R tRNA-Gln complement(943399..943470) Chlamydophila caviae GPIC 3365451 CCA_t34 tRNA CCA_t34 NC_003361.3 992926 992996 D tRNA-Cys 992926..992996 Chlamydophila caviae GPIC 3365446 CCA_t35 tRNA CCA_t35 NC_003361.3 1026352 1026425 D tRNA-His 1026352..1026425 Chlamydophila caviae GPIC 3365447 CCA_t36 tRNA CCA_t36 NC_003361.3 1064489 1064560 D tRNA-Gly 1064489..1064560 Chlamydophila caviae GPIC 3365448 CCA_t37 tRNA CCA_t37 NC_003361.3 1138040 1138112 R tRNA-Arg complement(1138040..1138112) Chlamydophila caviae GPIC 3365450 CCA_t38 tRNA CCA_t38 NC_003361.3 1171136 1171209 R tRNA-Pro complement(1171136..1171209) Chlamydophila caviae GPIC 3365449 CCA_r01 rRNA CCA_r01 NC_003361.3 1020573 1020691 R 5S ribosomal RNA complement(1020573..1020691) Chlamydophila caviae GPIC 3365472 CCA_r02 rRNA CCA_r02 NC_003361.3 1020804 1023753 R 23S ribosomal RNA complement(1020804..1023753) Chlamydophila caviae GPIC 3365474 CCA_r03 rRNA CCA_r03 NC_003361.3 1023977 1025525 R 16S ribosomal RNA complement(1023977..1025525) Chlamydophila caviae GPIC 3365473