-- dump date 20140619_040450 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 138677000001 SEQ_END SEQ_END NC_002491.1 1226565 1226565 DR NC_002491.1; contig end 1226565..1226565 Chlamydophila pneumoniae J138 NP_300060.1 CDS CPj0001 NC_002491.1 1 282 R hypothetical protein complement(1..282) Chlamydophila pneumoniae J138 918766 NP_300061.1 CDS gatC NC_002491.1 573 878 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 573..878 Chlamydophila pneumoniae J138 918790 NP_300062.1 CDS gatA NC_002491.1 895 2373 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 895..2373 Chlamydophila pneumoniae J138 918791 NP_300063.1 CDS gatB NC_002491.1 2370 3836 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 2370..3836 Chlamydophila pneumoniae J138 918792 NP_300064.1 CDS pmp_1 NC_002491.1 4127 6895 D hypothetical protein 4127..6895 Chlamydophila pneumoniae J138 918793 NP_300065.1 CDS CPj0006 NC_002491.1 7138 7293 R hypothetical protein complement(7138..7293) Chlamydophila pneumoniae J138 918794 NP_300066.1 CDS CPj0007 NC_002491.1 7515 10169 D hypothetical protein 7515..10169 Chlamydophila pneumoniae J138 918795 NP_300067.1 CDS CPj0008 NC_002491.1 10645 11358 D hypothetical protein 10645..11358 Chlamydophila pneumoniae J138 918796 NP_300068.1 CDS CPj0009 NC_002491.1 11485 12792 D hypothetical protein 11485..12792 Chlamydophila pneumoniae J138 918797 NP_300069.1 CDS CPj0010 NC_002491.1 13104 15428 D hypothetical protein 13104..15428 Chlamydophila pneumoniae J138 918799 NP_300070.1 CDS CPj0011 NC_002491.1 15571 16296 D hypothetical protein 15571..16296 Chlamydophila pneumoniae J138 918800 NP_300071.1 CDS CPj0012 NC_002491.1 16323 17894 D hypothetical protein 16323..17894 Chlamydophila pneumoniae J138 918801 NP_300072.1 CDS pmp_2_1 NC_002491.1 18263 20401 D hypothetical protein 18263..20401 Chlamydophila pneumoniae J138 918802 NP_300073.1 CDS pmp_2_2 NC_002491.1 20332 20787 D frame-shift with pmp2_1; hypothetical protein 20332..20787 Chlamydophila pneumoniae J138 918803 NP_300074.1 CDS pmp_3_1 NC_002491.1 21043 21603 D hypothetical protein 21043..21603 Chlamydophila pneumoniae J138 918804 NP_300075.1 CDS pmp_3_2 NC_002491.1 21537 23855 D frame-shift with pmp3_1; hypothetical protein 21537..23855 Chlamydophila pneumoniae J138 918805 NP_300076.1 CDS pmp_4_1 NC_002491.1 24094 25377 D hypothetical protein 24094..25377 Chlamydophila pneumoniae J138 918806 NP_300077.1 CDS pmp_4_1_2 NC_002491.1 25374 25862 D frame-shift with pmp_4_1; hypothetical protein 25374..25862 Chlamydophila pneumoniae J138 918807 NP_300078.1 CDS pmp_4_2 NC_002491.1 25765 26844 D frame-shift with pmp_4_1_2; hypothetical protein 25765..26844 Chlamydophila pneumoniae J138 918808 NP_300079.1 CDS pmp_5_1 NC_002491.1 27193 28677 D hypothetical protein 27193..28677 Chlamydophila pneumoniae J138 918809 NP_300080.1 CDS pmp_5_2 NC_002491.1 28693 30030 D frame-shift with pmp_5_1; hypothetical protein 28693..30030 Chlamydophila pneumoniae J138 918810 NP_300081.1 CDS CPj0020 NC_002491.1 30271 32358 R leader peptide: outer membrane; hypothetical protein complement(30271..32358) Chlamydophila pneumoniae J138 918811 NP_300082.1 CDS CPj0021 NC_002491.1 32375 34081 R leader peptide; hypothetical protein complement(32375..34081) Chlamydophila pneumoniae J138 918812 NP_300083.1 CDS maf NC_002491.1 34063 34653 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(34063..34653) Chlamydophila pneumoniae J138 918813 NP_300084.1 CDS yjjK NC_002491.1 34682 36274 R ABC transporter protein ATPase complement(34682..36274) Chlamydophila pneumoniae J138 918814 NP_300085.1 CDS xerC NC_002491.1 36329 37267 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(36329..37267) Chlamydophila pneumoniae J138 918815 NP_300086.1 CDS atsA NC_002491.1 37352 38275 R member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(37352..38275) Chlamydophila pneumoniae J138 918816 NP_300087.1 CDS CPj0026 NC_002491.1 38430 39296 R hypothetical protein complement(38430..39296) Chlamydophila pneumoniae J138 918817 NP_300088.1 CDS lon NC_002491.1 39446 41905 R Lon ATP-dependent protease complement(39446..41905) Chlamydophila pneumoniae J138 918819 NP_300089.1 CDS CPj0028 NC_002491.1 42211 42996 R hypothetical protein complement(42211..42996) Chlamydophila pneumoniae J138 918820 NP_300090.1 CDS CPj0029 NC_002491.1 43058 43426 R hypothetical protein complement(43058..43426) Chlamydophila pneumoniae J138 918821 NP_300091.1 CDS gcp_1 NC_002491.1 43562 44203 D O-sialoglycoprotein endopeptidase 43562..44203 Chlamydophila pneumoniae J138 918822 NP_300092.1 CDS rpsU NC_002491.1 44382 44558 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 44382..44558 Chlamydophila pneumoniae J138 918823 NP_300093.1 CDS dnaJ NC_002491.1 44594 45772 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 44594..45772 Chlamydophila pneumoniae J138 918824 NP_300094.1 CDS pdhA_pdhB NC_002491.1 45809 47845 D (pyruvate) oxoisovalerate dehydrogenase alpha and beta fusion 45809..47845 Chlamydophila pneumoniae J138 918825 NP_300095.1 CDS CPj0034 NC_002491.1 47878 49128 R hypothetical protein complement(47878..49128) Chlamydophila pneumoniae J138 918826 NP_300096.1 CDS CPj0035 NC_002491.1 49237 50700 R hypothetical protein complement(49237..50700) Chlamydophila pneumoniae J138 918827 NP_300097.1 CDS CPj0036 NC_002491.1 50673 51470 D hypothetical protein 50673..51470 Chlamydophila pneumoniae J138 918828 NP_300098.1 CDS ptsH NC_002491.1 51463 51789 D Pts phosphocarrier protein HPr 51463..51789 Chlamydophila pneumoniae J138 918829 NP_300099.1 CDS ptsI NC_002491.1 51790 53505 D Pts PEP phosphotransferase 51790..53505 Chlamydophila pneumoniae J138 918830 NP_300100.1 CDS ybaB NC_002491.1 53631 53921 R hypothetical protein complement(53631..53921) Chlamydophila pneumoniae J138 918831 NP_300101.1 CDS dnaX_1 NC_002491.1 53986 55314 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(53986..55314) Chlamydophila pneumoniae J138 918818 NP_300102.1 CDS CPj0041 NC_002491.1 55667 57016 D hypothetical protein 55667..57016 Chlamydophila pneumoniae J138 918798 NP_300103.1 CDS CPj0042 NC_002491.1 57074 57856 D hypothetical protein 57074..57856 Chlamydophila pneumoniae J138 918832 NP_300104.1 CDS CPj0043 NC_002491.1 58118 60046 D hypothetical protein 58118..60046 Chlamydophila pneumoniae J138 919253 NP_300105.1 CDS CPj0044 NC_002491.1 60090 60452 D hypothetical protein 60090..60452 Chlamydophila pneumoniae J138 918833 NP_300106.1 CDS CPj0045 NC_002491.1 60740 62947 D hypothetical protein 60740..62947 Chlamydophila pneumoniae J138 918834 NP_300107.1 CDS CPj0047 NC_002491.1 63136 63336 D hypothetical protein 63136..63336 Chlamydophila pneumoniae J138 918835 NP_300108.1 CDS yqfF NC_002491.1 63368 65485 D hypothetical protein 63368..65485 Chlamydophila pneumoniae J138 918836 NP_300109.1 CDS CPj0049 NC_002491.1 65495 65977 R hypothetical protein complement(65495..65977) Chlamydophila pneumoniae J138 918837 NP_300110.1 CDS CPj0050 NC_002491.1 66220 66489 R hypothetical protein complement(66220..66489) Chlamydophila pneumoniae J138 918838 NP_300111.1 CDS CPj0051 NC_002491.1 66509 66790 D hypothetical protein 66509..66790 Chlamydophila pneumoniae J138 918840 NP_300112.1 CDS hemC NC_002491.1 66977 67681 R transformation of prophobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(66977..67681) Chlamydophila pneumoniae J138 918841 NP_300113.1 CDS sms NC_002491.1 67659 69020 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(67659..69020) Chlamydophila pneumoniae J138 918842 NP_300114.1 CDS rnc NC_002491.1 68986 69699 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(68986..69699) Chlamydophila pneumoniae J138 918843 NP_300115.1 CDS CPj0055 NC_002491.1 69805 70269 D hypothetical protein 69805..70269 Chlamydophila pneumoniae J138 918844 NP_300116.1 CDS mrsA NC_002491.1 70629 72425 D phosphomannomutase 70629..72425 Chlamydophila pneumoniae J138 918845 NP_300117.1 CDS sodM NC_002491.1 72610 73233 D superoxide dismutase (Mn) 72610..73233 Chlamydophila pneumoniae J138 918846 NP_300118.1 CDS accD NC_002491.1 73315 74241 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 73315..74241 Chlamydophila pneumoniae J138 918847 NP_300119.1 CDS dut NC_002491.1 74292 74729 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 74292..74729 Chlamydophila pneumoniae J138 918848 NP_300120.1 CDS ptsN_1 NC_002491.1 74731 75207 D Pts IIA protein 74731..75207 Chlamydophila pneumoniae J138 918849 NP_300121.1 CDS ptsN_2 NC_002491.1 75210 75887 D PTS system IIA protein 75210..75887 Chlamydophila pneumoniae J138 918850 NP_300122.1 CDS CPj0062 NC_002491.1 75984 77369 D hypothetical protein 75984..77369 Chlamydophila pneumoniae J138 918851 NP_300123.1 CDS CPj0063 NC_002491.1 77788 77946 D hypothetical protein 77788..77946 Chlamydophila pneumoniae J138 918852 NP_300124.1 CDS CPj0064 NC_002491.1 78022 78255 D hypothetical protein 78022..78255 Chlamydophila pneumoniae J138 918853 NP_300125.1 CDS CPj0065 NC_002491.1 78600 80330 D hypothetical protein 78600..80330 Chlamydophila pneumoniae J138 918854 NP_300126.1 CDS CPj0066 NC_002491.1 80601 82334 D hypothetical protein 80601..82334 Chlamydophila pneumoniae J138 918855 NP_300127.1 CDS CPj0067 NC_002491.1 82629 83732 D hypothetical protein 82629..83732 Chlamydophila pneumoniae J138 918856 NP_300128.1 CDS CPj0068 NC_002491.1 84004 84579 R hypothetical protein complement(84004..84579) Chlamydophila pneumoniae J138 918857 NP_300129.1 CDS CPj0069 NC_002491.1 84976 86760 D hypothetical protein 84976..86760 Chlamydophila pneumoniae J138 918858 NP_300130.1 CDS CPj0071 NC_002491.1 87266 87715 R hypothetical protein complement(87266..87715) Chlamydophila pneumoniae J138 918860 NP_300131.1 CDS CPj0072 NC_002491.1 87724 88731 R hypothetical protein complement(87724..88731) Chlamydophila pneumoniae J138 918861 NP_300132.1 CDS infA NC_002491.1 89026 89247 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 89026..89247 Chlamydophila pneumoniae J138 918862 NP_300133.1 CDS tuf NC_002491.1 89444 90628 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 89444..90628 Chlamydophila pneumoniae J138 918864 NP_300134.1 CDS secE NC_002491.1 90772 91023 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 90772..91023 Chlamydophila pneumoniae J138 918866 NP_300135.1 CDS nusG NC_002491.1 91028 91576 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 91028..91576 Chlamydophila pneumoniae J138 918867 NP_300136.1 CDS rplK NC_002491.1 91683 92108 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 91683..92108 Chlamydophila pneumoniae J138 918868 NP_300137.1 CDS rplA NC_002491.1 92135 92833 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 92135..92833 Chlamydophila pneumoniae J138 918870 NP_300138.1 CDS rplJ NC_002491.1 92849 93361 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 92849..93361 Chlamydophila pneumoniae J138 918871 NP_300139.1 CDS rplL NC_002491.1 93405 93794 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 93405..93794 Chlamydophila pneumoniae J138 918872 NP_300140.1 CDS rpoB NC_002491.1 93931 97689 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 93931..97689 Chlamydophila pneumoniae J138 918873 NP_300141.1 CDS rpoC NC_002491.1 97713 101894 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 97713..101894 Chlamydophila pneumoniae J138 918874 NP_300142.1 CDS tal NC_002491.1 102003 102986 D Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 102003..102986 Chlamydophila pneumoniae J138 918875 NP_300143.1 CDS CPj0084 NC_002491.1 103033 103425 D ferredoxin 103033..103425 Chlamydophila pneumoniae J138 918876 NP_300144.1 CDS CPj0085 NC_002491.1 103434 104177 R hypothetical protein complement(103434..104177) Chlamydophila pneumoniae J138 918877 NP_300145.1 CDS atpE NC_002491.1 104575 105201 D produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit E 104575..105201 Chlamydophila pneumoniae J138 918878 NP_300146.1 CDS CPj0087 NC_002491.1 105250 106050 D hypothetical protein 105250..106050 Chlamydophila pneumoniae J138 918879 NP_300147.1 CDS atpA NC_002491.1 106044 107819 D produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 106044..107819 Chlamydophila pneumoniae J138 918880 NP_300148.1 CDS atpB NC_002491.1 107824 109140 D produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 107824..109140 Chlamydophila pneumoniae J138 918881 NP_300149.1 CDS atpD NC_002491.1 109125 109754 D produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 109125..109754 Chlamydophila pneumoniae J138 918882 NP_300150.1 CDS atpI NC_002491.1 109745 111727 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 109745..111727 Chlamydophila pneumoniae J138 918883 NP_300151.1 CDS atpK NC_002491.1 111822 112247 D produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 111822..112247 Chlamydophila pneumoniae J138 918884 NP_300152.1 CDS CPj0093 NC_002491.1 112180 112689 D hypothetical protein 112180..112689 Chlamydophila pneumoniae J138 918885 NP_300153.1 CDS valS NC_002491.1 112823 115645 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 112823..115645 Chlamydophila pneumoniae J138 918869 NP_300154.2 CDS pknD NC_002491.1 115666 118464 D PknD; responsible for phosphorylation of proteins on serine and threonine residues; similar to eukaryotic Ser/Thr kinases; in Chlamydia trachomatis itseems to interact with Pkn1, another serine/threonine-protein kinase; serine/threonine-protein kinase 115666..118464 Chlamydophila pneumoniae J138 918839 NP_300155.1 CDS uvrA NC_002491.1 118505 123985 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(118505..123985) Chlamydophila pneumoniae J138 918887 NP_300156.1 CDS pyk NC_002491.1 124226 125680 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 124226..125680 Chlamydophila pneumoniae J138 918888 NP_300157.1 CDS htrB_2 NC_002491.1 125774 126799 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(125774..126799) Chlamydophila pneumoniae J138 918889 NP_300158.1 CDS htrB_1 NC_002491.1 126681 127202 R acyltransferase complement(126681..127202) Chlamydophila pneumoniae J138 918890 NP_300159.1 CDS CPj0099 NC_002491.1 127304 127579 D hypothetical protein 127304..127579 Chlamydophila pneumoniae J138 918891 NP_300160.1 CDS CPj0100 NC_002491.1 127590 128852 R hypothetical protein complement(127590..128852) Chlamydophila pneumoniae J138 918892 NP_300161.1 CDS ybbP NC_002491.1 128849 129643 R hypothetical protein complement(128849..129643) Chlamydophila pneumoniae J138 918893 NP_300162.1 CDS cydA NC_002491.1 129834 131180 D cytochrome oxidase subunit I 129834..131180 Chlamydophila pneumoniae J138 918894 NP_300163.1 CDS cydB NC_002491.1 131191 132225 D cytochrome oxidase subunit II 131191..132225 Chlamydophila pneumoniae J138 918895 NP_300164.1 CDS CPj0104 NC_002491.1 132384 133586 R hypothetical protein complement(132384..133586) Chlamydophila pneumoniae J138 918896 NP_300165.1 CDS CPj0105 NC_002491.1 133737 134558 R hypothetical protein complement(133737..134558) Chlamydophila pneumoniae J138 918897 NP_300166.1 CDS phoH NC_002491.1 134802 136088 D ATPase 134802..136088 Chlamydophila pneumoniae J138 918898 NP_300167.1 CDS CPj0107 NC_002491.1 136100 136873 R hypothetical protein complement(136100..136873) Chlamydophila pneumoniae J138 918899 NP_300168.1 CDS CPj0108 NC_002491.1 137011 137568 R hypothetical protein complement(137011..137568) Chlamydophila pneumoniae J138 918900 NP_300169.1 CDS ileS NC_002491.1 138366 141497 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 138366..141497 Chlamydophila pneumoniae J138 918769 NP_300170.1 CDS lepB NC_002491.1 141535 143445 R signal peptidase I complement(141535..143445) Chlamydophila pneumoniae J138 918774 NP_300171.1 CDS CPj0111 NC_002491.1 143642 144397 R hypothetical protein complement(143642..144397) Chlamydophila pneumoniae J138 918773 NP_300172.1 CDS rpmE2 NC_002491.1 144478 144807 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 144478..144807 Chlamydophila pneumoniae J138 918772 NP_300173.1 CDS prfA NC_002491.1 145046 146119 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 145046..146119 Chlamydophila pneumoniae J138 918901 NP_300174.1 CDS hemK NC_002491.1 146109 146975 D HemK; PrmC; transfers a methyl group from S-adenosyl-methionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB possibly stimulating release of completed polypeptide chains; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 146109..146975 Chlamydophila pneumoniae J138 918902 NP_300175.1 CDS ffh NC_002491.1 146990 148336 D signal recognition particle GTPase 146990..148336 Chlamydophila pneumoniae J138 918903 NP_300176.1 CDS rpsP NC_002491.1 148327 148686 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 148327..148686 Chlamydophila pneumoniae J138 918904 NP_300177.1 CDS trmD NC_002491.1 148700 149785 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; Chlamydial proteins show a C-terminal extension of unknown function; tRNA (guanine-N(1)-)-methyltransferase 148700..149785 Chlamydophila pneumoniae J138 918905 NP_300178.1 CDS rplS NC_002491.1 149813 150178 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 149813..150178 Chlamydophila pneumoniae J138 918906 NP_300179.1 CDS rnhB NC_002491.1 150234 150878 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 150234..150878 Chlamydophila pneumoniae J138 918907 NP_300180.1 CDS gmk NC_002491.1 150875 151492 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 150875..151492 Chlamydophila pneumoniae J138 918908 NP_300181.1 CDS CPj0121 NC_002491.1 151489 151782 D hypothetical protein 151489..151782 Chlamydophila pneumoniae J138 918909 NP_300182.1 CDS metG NC_002491.1 151782 153437 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 151782..153437 Chlamydophila pneumoniae J138 918910 NP_300183.1 CDS recD_1 NC_002491.1 153482 155680 R exodeoxyribonuclease V subunit alpha complement(153482..155680) Chlamydophila pneumoniae J138 918911 NP_300184.1 CDS CPj0124 NC_002491.1 156325 157782 D hypothetical protein 156325..157782 Chlamydophila pneumoniae J138 918912 NP_300185.1 CDS CPj0125 NC_002491.1 157807 158319 D hypothetical protein 157807..158319 Chlamydophila pneumoniae J138 918913 NP_300186.1 CDS CPj0126 NC_002491.1 158520 160799 D hypothetical protein 158520..160799 Chlamydophila pneumoniae J138 918914 NP_300187.1 CDS ytfF NC_002491.1 160838 161854 R cationic amino acid transporter complement(160838..161854) Chlamydophila pneumoniae J138 918915 NP_300188.1 CDS CPj0128 NC_002491.1 161988 162767 D biotin--protein ligase 161988..162767 Chlamydophila pneumoniae J138 918916 NP_300189.1 CDS CPj0130 NC_002491.1 162772 163956 R hypothetical protein complement(162772..163956) Chlamydophila pneumoniae J138 918917 NP_300190.1 CDS CPj0131 NC_002491.1 164260 165294 D hypothetical protein 164260..165294 Chlamydophila pneumoniae J138 918787 NP_300191.1 CDS CPj0132 NC_002491.1 165298 166275 D hypothetical protein 165298..166275 Chlamydophila pneumoniae J138 918918 NP_300192.1 CDS CPj0133 NC_002491.1 166272 167045 R hypothetical protein complement(166272..167045) Chlamydophila pneumoniae J138 918919 NP_300193.1 CDS groEL NC_002491.1 167175 168809 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL complement(167175..168809) Chlamydophila pneumoniae J138 918921 NP_300194.1 CDS groES NC_002491.1 168851 169159 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(168851..169159) Chlamydophila pneumoniae J138 918922 NP_300195.1 CDS pepF NC_002491.1 169277 171112 R oligopeptidase complement(169277..171112) Chlamydophila pneumoniae J138 918924 NP_300196.1 CDS ybgI NC_002491.1 171210 171965 R Acr family transporter complement(171210..171965) Chlamydophila pneumoniae J138 918925 NP_300197.1 CDS hemL NC_002491.1 172408 173730 R catalyzes the formation of 5-aminolevulinate from (S)-4-amino-5-oxopentanoate; glutamate-1-semialdehyde aminotransferase complement(172408..173730) Chlamydophila pneumoniae J138 918926 NP_300198.1 CDS yqgE NC_002491.1 173801 174367 R hypothetical protein complement(173801..174367) Chlamydophila pneumoniae J138 918928 NP_300199.1 CDS yqdE NC_002491.1 174381 174821 R hypothetical protein complement(174381..174821) Chlamydophila pneumoniae J138 918929 NP_300200.1 CDS rpiA NC_002491.1 174818 175513 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(174818..175513) Chlamydophila pneumoniae J138 918930 NP_300201.1 CDS CPj0142 NC_002491.1 175524 175802 R hypothetical protein complement(175524..175802) Chlamydophila pneumoniae J138 918931 NP_300202.1 CDS yxjG_1 NC_002491.1 175922 177046 R hypothetical protein complement(175922..177046) Chlamydophila pneumoniae J138 918933 NP_300203.1 CDS clpB NC_002491.1 177674 180274 D Clp protease ATPase 177674..180274 Chlamydophila pneumoniae J138 918934 NP_300204.1 CDS CPj0145 NC_002491.1 180488 182083 D hypothetical protein 180488..182083 Chlamydophila pneumoniae J138 918936 NP_300205.1 CDS CPj0146 NC_002491.1 182324 182809 D hypothetical protein 182324..182809 Chlamydophila pneumoniae J138 918937 NP_300206.1 CDS CPj0147 NC_002491.1 182936 183385 D hypothetical protein 182936..183385 Chlamydophila pneumoniae J138 918938 NP_300207.1 CDS CPj0148 NC_002491.1 183557 185416 D S/T protein kinase 183557..185416 Chlamydophila pneumoniae J138 918939 NP_300208.1 CDS ligA NC_002491.1 185426 187414 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 185426..187414 Chlamydophila pneumoniae J138 918940 NP_300209.1 CDS CPj0150 NC_002491.1 187545 192158 D hypothetical protein 187545..192158 Chlamydophila pneumoniae J138 918941 NP_300210.1 CDS mhpA NC_002491.1 192333 193853 R monooxygenase complement(192333..193853) Chlamydophila pneumoniae J138 918942 NP_300211.1 CDS CPj0152 NC_002491.1 194026 194976 R hypothetical protein complement(194026..194976) Chlamydophila pneumoniae J138 918943 NP_300212.1 CDS leuS NC_002491.1 195144 197606 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 195144..197606 Chlamydophila pneumoniae J138 918944 NP_300213.1 CDS gseA NC_002491.1 197603 198916 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 197603..198916 Chlamydophila pneumoniae J138 918945 NP_300214.1 CDS CPj0155 NC_002491.1 199196 199402 R hypothetical protein complement(199196..199402) Chlamydophila pneumoniae J138 918949 NP_300215.1 CDS CPj0156 NC_002491.1 199478 199828 R hypothetical protein complement(199478..199828) Chlamydophila pneumoniae J138 918950 NP_300216.1 CDS CPj0157 NC_002491.1 200007 200435 R hypothetical protein complement(200007..200435) Chlamydophila pneumoniae J138 918951 NP_300217.1 CDS CPj0158 NC_002491.1 200603 201142 R hypothetical protein complement(200603..201142) Chlamydophila pneumoniae J138 918952 NP_300218.1 CDS CPj0159 NC_002491.1 201176 201484 R hypothetical protein complement(201176..201484) Chlamydophila pneumoniae J138 918953 NP_300219.1 CDS pfkA_1 NC_002491.1 201780 203414 R catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase complement(201780..203414) Chlamydophila pneumoniae J138 918955 NP_300220.1 CDS CPj0161 NC_002491.1 203418 204245 R acyltransferase complement(203418..204245) Chlamydophila pneumoniae J138 918956 NP_300221.1 CDS CPj0162 NC_002491.1 204423 205451 R hypothetical protein complement(204423..205451) Chlamydophila pneumoniae J138 918948 NP_300222.1 CDS CPj0163 NC_002491.1 205649 206020 D hypothetical protein 205649..206020 Chlamydophila pneumoniae J138 918920 NP_300223.1 CDS CPj0164 NC_002491.1 206121 206624 D hypothetical protein 206121..206624 Chlamydophila pneumoniae J138 918957 NP_300224.1 CDS CPj0165 NC_002491.1 206621 207208 D hypothetical protein 206621..207208 Chlamydophila pneumoniae J138 918958 NP_300225.1 CDS CPj0166 NC_002491.1 207253 207588 D hypothetical protein 207253..207588 Chlamydophila pneumoniae J138 918959 NP_300226.1 CDS CPj0167 NC_002491.1 207597 207929 R hypothetical protein complement(207597..207929) Chlamydophila pneumoniae J138 918960 NP_300227.1 CDS CPj0168 NC_002491.1 208037 208264 R hypothetical protein complement(208037..208264) Chlamydophila pneumoniae J138 918961 NP_300228.1 CDS CPj0169 NC_002491.1 208330 209124 R hypothetical protein complement(208330..209124) Chlamydophila pneumoniae J138 918962 NP_300229.1 CDS CPj0170 NC_002491.1 209645 210649 R hypothetical protein complement(209645..210649) Chlamydophila pneumoniae J138 918964 NP_300230.1 CDS guaA NC_002491.1 210769 212058 R GMP synthase complement(210769..212058) Chlamydophila pneumoniae J138 918965 NP_300231.1 CDS guaB NC_002491.1 212060 212800 R inosine 5'-monophosphase dehydrogenase complement(212060..212800) Chlamydophila pneumoniae J138 918966 NP_300232.1 CDS CPj0173 NC_002491.1 213335 213610 R hypothetical protein complement(213335..213610) Chlamydophila pneumoniae J138 918967 NP_300233.1 CDS CPj0174 NC_002491.1 213880 214350 D hypothetical protein 213880..214350 Chlamydophila pneumoniae J138 918968 NP_300234.1 CDS CPj0175 NC_002491.1 214521 214901 D hypothetical protein 214521..214901 Chlamydophila pneumoniae J138 918969 NP_300235.1 CDS CPj0176 NC_002491.1 214909 216144 D hypothetical protein 214909..216144 Chlamydophila pneumoniae J138 918970 NP_300236.1 CDS CPj0177 NC_002491.1 216228 217082 R hypothetical protein complement(216228..217082) Chlamydophila pneumoniae J138 918971 NP_300237.1 CDS CPj0178 NC_002491.1 217409 217675 R hypothetical protein complement(217409..217675) Chlamydophila pneumoniae J138 918972 NP_300238.1 CDS CPj0179 NC_002491.1 217676 218026 R hypothetical protein complement(217676..218026) Chlamydophila pneumoniae J138 918973 NP_300239.1 CDS CPj0180 NC_002491.1 217975 218529 R hypothetical protein complement(217975..218529) Chlamydophila pneumoniae J138 918974 NP_300240.1 CDS CPj0181 NC_002491.1 218397 218798 R hypothetical protein complement(218397..218798) Chlamydophila pneumoniae J138 918975 NP_300241.1 CDS accC NC_002491.1 218954 220318 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(218954..220318) Chlamydophila pneumoniae J138 918976 NP_300242.1 CDS accB NC_002491.1 220315 220818 R composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit complement(220315..220818) Chlamydophila pneumoniae J138 918978 NP_300243.1 CDS efp_1 NC_002491.1 220841 221398 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(220841..221398) Chlamydophila pneumoniae J138 918980 NP_300244.1 CDS rpe NC_002491.1 221385 222074 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(221385..222074) Chlamydophila pneumoniae J138 918981 NP_300245.1 CDS CPj0186 NC_002491.1 222522 223694 D hypothetical protein 222522..223694 Chlamydophila pneumoniae J138 918982 NP_300246.1 CDS CPj0187 NC_002491.1 223871 224671 D methylase 223871..224671 Chlamydophila pneumoniae J138 918983 NP_300247.1 CDS CPj0188 NC_002491.1 224734 226026 D hypothetical protein 224734..226026 Chlamydophila pneumoniae J138 918984 NP_300248.1 CDS CPj0189 NC_002491.1 226696 229443 D possible transmembrane protein; hypothetical protein 226696..229443 Chlamydophila pneumoniae J138 918985 NP_300249.1 CDS CPj0190 NC_002491.1 229534 230892 D hypothetical protein 229534..230892 Chlamydophila pneumoniae J138 918986 NP_300250.1 CDS glnQ NC_002491.1 230926 231606 R amino acid ABC transporter ATPase complement(230926..231606) Chlamydophila pneumoniae J138 918987 NP_300251.1 CDS glnP NC_002491.1 231596 232249 R amino acid ABC transporter permease complement(231596..232249) Chlamydophila pneumoniae J138 918988 NP_300252.1 CDS argR NC_002491.1 232298 232741 R arginine repressor ArgR complement(232298..232741) Chlamydophila pneumoniae J138 918989 NP_300253.1 CDS gcp_2 NC_002491.1 232825 233859 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 232825..233859 Chlamydophila pneumoniae J138 918990 NP_300254.1 CDS oppA_1 NC_002491.1 233805 235403 D oligopeptide binding protein 233805..235403 Chlamydophila pneumoniae J138 918991 NP_300255.1 CDS oppA_2 NC_002491.1 235554 237137 D oligopeptide binding protein 235554..237137 Chlamydophila pneumoniae J138 918993 NP_300256.1 CDS oppA_3 NC_002491.1 237193 238500 D oligopeptide binding protein 237193..238500 Chlamydophila pneumoniae J138 918994 NP_300257.1 CDS oppA_4 NC_002491.1 238784 240364 D oligopeptide binding protein 238784..240364 Chlamydophila pneumoniae J138 918995 NP_300258.1 CDS oppB_1 NC_002491.1 240657 241601 D oligopeptide permease 240657..241601 Chlamydophila pneumoniae J138 918786 NP_300259.1 CDS oppC_1 NC_002491.1 241632 242486 D oligopeptide permease 241632..242486 Chlamydophila pneumoniae J138 918932 NP_300260.1 CDS oppD NC_002491.1 242479 243333 D peptide ABC transporter ATPase 242479..243333 Chlamydophila pneumoniae J138 918979 NP_300261.1 CDS oppF NC_002491.1 243330 244118 D peptide ABC transporter ATPase 243330..244118 Chlamydophila pneumoniae J138 918935 NP_300262.1 CDS CPj0203 NC_002491.1 244623 245420 D hypothetical protein 244623..245420 Chlamydophila pneumoniae J138 918789 NP_300263.1 CDS CPj0204 NC_002491.1 245432 245620 D hypothetical protein 245432..245620 Chlamydophila pneumoniae J138 918923 NP_300264.1 CDS CPj0205 NC_002491.1 245748 245945 D hypothetical protein 245748..245945 Chlamydophila pneumoniae J138 918996 NP_300265.1 CDS CPj0206 NC_002491.1 246024 246779 D hypothetical protein 246024..246779 Chlamydophila pneumoniae J138 918998 NP_300266.1 CDS ybhI NC_002491.1 246823 248235 D dicarboxylase translocator 246823..248235 Chlamydophila pneumoniae J138 919000 NP_300267.1 CDS pfkA_2 NC_002491.1 248568 250220 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 248568..250220 Chlamydophila pneumoniae J138 919001 NP_300268.1 CDS CPj0209 NC_002491.1 250651 250890 D hypothetical protein 250651..250890 Chlamydophila pneumoniae J138 919002 NP_300269.1 CDS CPj0210 NC_002491.1 251052 251999 R hypothetical protein complement(251052..251999) Chlamydophila pneumoniae J138 919003 NP_300270.1 CDS CPj0211 NC_002491.1 252075 252371 R hypothetical protein complement(252075..252371) Chlamydophila pneumoniae J138 919004 NP_300271.1 CDS CPj0212 NC_002491.1 252500 253681 R hypothetical protein complement(252500..253681) Chlamydophila pneumoniae J138 919005 NP_300272.1 CDS CPj0213 NC_002491.1 253729 253908 R hypothetical protein complement(253729..253908) Chlamydophila pneumoniae J138 919006 NP_300273.1 CDS CPj0214 NC_002491.1 254065 255279 R hypothetical protein complement(254065..255279) Chlamydophila pneumoniae J138 919007 NP_300274.1 CDS CPj0215 NC_002491.1 255378 256637 R hypothetical protein complement(255378..256637) Chlamydophila pneumoniae J138 919008 NP_300275.1 CDS CPj0216 NC_002491.1 256793 257230 R hypothetical protein complement(256793..257230) Chlamydophila pneumoniae J138 919009 NP_300276.1 CDS ypdP NC_002491.1 257518 258204 D hypothetical protein 257518..258204 Chlamydophila pneumoniae J138 919010 NP_300277.1 CDS CPj0218 NC_002491.1 258201 258680 R hypothetical protein complement(258201..258680) Chlamydophila pneumoniae J138 919012 NP_300278.1 CDS tgt NC_002491.1 258979 260097 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4, 5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7- deazaguanosine); queuine tRNA-ribosyltransferase 258979..260097 Chlamydophila pneumoniae J138 919013 NP_300279.1 CDS CPj0220 NC_002491.1 260318 260863 D hypothetical protein 260318..260863 Chlamydophila pneumoniae J138 919791 NP_300280.1 CDS CPj0221 NC_002491.1 261279 261689 D hypothetical protein 261279..261689 Chlamydophila pneumoniae J138 919789 NP_300281.1 CDS CPj0222 NC_002491.1 262126 262467 D hypothetical protein 262126..262467 Chlamydophila pneumoniae J138 919786 NP_300282.1 CDS CPj0223 NC_002491.1 262578 262958 D hypothetical protein 262578..262958 Chlamydophila pneumoniae J138 919785 NP_300283.1 CDS CPj0224 NC_002491.1 263057 263299 D hypothetical protein 263057..263299 Chlamydophila pneumoniae J138 919784 NP_300284.1 CDS CPj0225 NC_002491.1 263495 264166 D hypothetical protein 263495..264166 Chlamydophila pneumoniae J138 919794 NP_300285.1 CDS CPj0226 NC_002491.1 264188 264592 D hypothetical protein 264188..264592 Chlamydophila pneumoniae J138 919788 NP_300286.1 CDS dsbB NC_002491.1 264628 265038 R disulfide oxidoreductase complement(264628..265038) Chlamydophila pneumoniae J138 919777 NP_300287.1 CDS dsbG NC_002491.1 265031 265732 R disulfide bond chaperone complement(265031..265732) Chlamydophila pneumoniae J138 919779 NP_300288.1 CDS CPj0229 NC_002491.1 265950 267185 D hypothetical protein 265950..267185 Chlamydophila pneumoniae J138 919751 NP_300289.1 CDS CPj0230 NC_002491.1 267195 267875 R hypothetical protein complement(267195..267875) Chlamydophila pneumoniae J138 919756 NP_300290.1 CDS tauB NC_002491.1 267872 268579 R nitrate/iron ABC transporter ATPase complement(267872..268579) Chlamydophila pneumoniae J138 919015 NP_300291.1 CDS CPj0232 NC_002491.1 268851 269744 R 5'-methylthioadenosine nucleosidase complement(268851..269744) Chlamydophila pneumoniae J138 918785 NP_300292.1 CDS CPj0233 NC_002491.1 269867 270046 R hypothetical protein complement(269867..270046) Chlamydophila pneumoniae J138 918784 NP_300293.1 CDS CPj0234 NC_002491.1 270167 270862 R hypothetical protein complement(270167..270862) Chlamydophila pneumoniae J138 919017 NP_300294.1 CDS kdsB NC_002491.1 271038 271802 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 271038..271802 Chlamydophila pneumoniae J138 919018 NP_300295.1 CDS pyrG NC_002491.1 271778 273391 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 271778..273391 Chlamydophila pneumoniae J138 919011 NP_300296.1 CDS yggF NC_002491.1 273384 273839 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase 273384..273839 Chlamydophila pneumoniae J138 918886 NP_300297.1 CDS zwf NC_002491.1 273925 275463 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 273925..275463 Chlamydophila pneumoniae J138 918927 NP_300298.1 CDS devB NC_002491.1 275689 276297 D catalyzes the formation of 6-phospho-D-gluconate from 6-phospho-D-glucono-1,5-lactone; 6-phosphogluconolactonase 275689..276297 Chlamydophila pneumoniae J138 918768 NP_300299.1 CDS CPj0240 NC_002491.1 276317 277483 R hypothetical protein complement(276317..277483) Chlamydophila pneumoniae J138 919019 NP_300300.1 CDS CPj0241 NC_002491.1 277822 278976 R hypothetical protein complement(277822..278976) Chlamydophila pneumoniae J138 919020 NP_300301.1 CDS CPj0242 NC_002491.1 279106 279540 R hypothetical protein complement(279106..279540) Chlamydophila pneumoniae J138 919021 NP_300302.1 CDS CPj0243 NC_002491.1 279752 280177 R hypothetical protein complement(279752..280177) Chlamydophila pneumoniae J138 919022 NP_300303.1 CDS adk NC_002491.1 280540 281181 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 280540..281181 Chlamydophila pneumoniae J138 919023 NP_300304.1 CDS ydhO NC_002491.1 281267 282124 D polysaccharide hydrolase-invasin repeat-containing protein 281267..282124 Chlamydophila pneumoniae J138 919024 NP_300305.1 CDS rpsI NC_002491.1 282170 282574 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(282170..282574) Chlamydophila pneumoniae J138 919025 NP_300306.1 CDS rplM NC_002491.1 282588 283037 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(282588..283037) Chlamydophila pneumoniae J138 919026 NP_300307.1 CDS ycfV NC_002491.1 283269 283949 R ABC transporter ATPase complement(283269..283949) Chlamydophila pneumoniae J138 919027 NP_300308.1 CDS CPj0249 NC_002491.1 283952 285463 R hypothetical protein complement(283952..285463) Chlamydophila pneumoniae J138 919028 NP_300309.1 CDS rpmG NC_002491.1 285521 285679 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(285521..285679) Chlamydophila pneumoniae J138 919029 NP_300310.1 CDS CPj0251 NC_002491.1 285682 287184 D hypothetical protein 285682..287184 Chlamydophila pneumoniae J138 919030 NP_300311.1 CDS CPj0252 NC_002491.1 287195 287707 R frame-shift with CPj0253; hypothetical protein complement(287195..287707) Chlamydophila pneumoniae J138 919031 NP_300312.1 CDS CPj0253 NC_002491.1 287569 288078 R hypothetical protein complement(287569..288078) Chlamydophila pneumoniae J138 919032 NP_300313.1 CDS CPj0254 NC_002491.1 288078 288884 R hypothetical protein complement(288078..288884) Chlamydophila pneumoniae J138 919033 NP_300314.1 CDS CPj0255 NC_002491.1 288948 289787 R hypothetical protein complement(288948..289787) Chlamydophila pneumoniae J138 919035 NP_300315.1 CDS CPj0256 NC_002491.1 290017 290886 R hypothetical protein complement(290017..290886) Chlamydophila pneumoniae J138 919036 NP_300316.1 CDS CPj0257 NC_002491.1 290886 291749 R hypothetical protein complement(290886..291749) Chlamydophila pneumoniae J138 919037 NP_300317.1 CDS CPj0258 NC_002491.1 291752 292138 R frame-shift with CPj0259; hypothetical protein complement(291752..292138) Chlamydophila pneumoniae J138 919038 NP_300318.1 CDS CPj0259 NC_002491.1 292060 292653 R hypothetical protein complement(292060..292653) Chlamydophila pneumoniae J138 919039 NP_300319.1 CDS secA_1 NC_002491.1 293167 293667 R protein translocase subunit complement(293167..293667) Chlamydophila pneumoniae J138 919042 NP_300320.1 CDS ydaO NC_002491.1 293924 294658 D PP-loop superfamily ATPase 293924..294658 Chlamydophila pneumoniae J138 919043 NP_300321.1 CDS surE NC_002491.1 294713 295558 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 294713..295558 Chlamydophila pneumoniae J138 919034 NP_300322.1 CDS yqfU NC_002491.1 295871 296761 D hypothetical protein 295871..296761 Chlamydophila pneumoniae J138 919045 NP_300323.1 CDS ubiD NC_002491.1 296774 297352 R aromatic acid decarboxylase complement(296774..297352) Chlamydophila pneumoniae J138 919046 NP_300324.1 CDS ubiA NC_002491.1 297349 298242 R UbiA prenyltransferase catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase complement(297349..298242) Chlamydophila pneumoniae J138 919047 NP_300325.1 CDS CPj0266 NC_002491.1 298806 299501 D hypothetical protein 298806..299501 Chlamydophila pneumoniae J138 919048 NP_300326.1 CDS CPj0267 NC_002491.1 299744 300535 D hypothetical protein 299744..300535 Chlamydophila pneumoniae J138 919049 NP_300327.1 CDS CPj0268 NC_002491.1 300557 300943 D hypothetical protein 300557..300943 Chlamydophila pneumoniae J138 919050 NP_300328.1 CDS CPj0269 NC_002491.1 301095 302072 R dipeptidase complement(301095..302072) Chlamydophila pneumoniae J138 919051 NP_300329.1 CDS ywlC NC_002491.1 302087 302947 R SuA5 superfamily-related protein complement(302087..302947) Chlamydophila pneumoniae J138 919052 NP_300330.1 CDS CPj0271 NC_002491.1 303256 303987 D lysophospholipase esterase 303256..303987 Chlamydophila pneumoniae J138 919054 NP_300331.1 CDS dnaX_2 NC_002491.1 303959 304855 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(303959..304855) Chlamydophila pneumoniae J138 919055 NP_300332.1 CDS tmk NC_002491.1 304846 305466 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(304846..305466) Chlamydophila pneumoniae J138 919056 NP_300333.1 CDS gyrA_1 NC_002491.1 305471 307975 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(305471..307975) Chlamydophila pneumoniae J138 919058 NP_300334.1 CDS gyrB NC_002491.1 307991 310408 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(307991..310408) Chlamydophila pneumoniae J138 919057 NP_300335.1 CDS CPj0276 NC_002491.1 310412 310759 R hypothetical protein complement(310412..310759) Chlamydophila pneumoniae J138 919870 NP_300336.1 CDS CPj0277 NC_002491.1 311023 311532 R hypothetical protein complement(311023..311532) Chlamydophila pneumoniae J138 919868 NP_300337.1 CDS CPj0278 NC_002491.1 311679 312497 R hypothetical protein complement(311679..312497) Chlamydophila pneumoniae J138 919059 NP_300338.1 CDS CPj0279 NC_002491.1 312494 313159 R ABC transporter permease complement(312494..313159) Chlamydophila pneumoniae J138 919863 NP_300339.1 CDS dppF_1 NC_002491.1 313169 314194 R dipeptide transporter ATPase complement(313169..314194) Chlamydophila pneumoniae J138 918767 NP_300340.1 CDS dhnA NC_002491.1 314679 315728 D catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 314679..315728 Chlamydophila pneumoniae J138 919064 NP_300341.1 CDS xasA NC_002491.1 315748 317154 D amino acid transporter 315748..317154 Chlamydophila pneumoniae J138 919065 NP_300342.1 CDS CPj0283 NC_002491.1 317151 317981 R hypothetical protein complement(317151..317981) Chlamydophila pneumoniae J138 919063 NP_300343.1 CDS CPj0284 NC_002491.1 318170 318667 R hypothetical protein complement(318170..318667) Chlamydophila pneumoniae J138 919061 NP_300344.1 CDS CPj0285 NC_002491.1 318670 320217 R hypothetical protein complement(318670..320217) Chlamydophila pneumoniae J138 919062 NP_300345.1 CDS mgtE NC_002491.1 320269 321681 R CBS domain; Mg++ transporter complement(320269..321681) Chlamydophila pneumoniae J138 919060 NP_300346.1 CDS CPj0287 NC_002491.1 321708 323843 R hypothetical protein complement(321708..323843) Chlamydophila pneumoniae J138 919068 NP_300347.1 CDS CPj0288 NC_002491.1 324190 325338 R hypothetical protein complement(324190..325338) Chlamydophila pneumoniae J138 919069 NP_300348.1 CDS aaaT NC_002491.1 325434 326621 D neutral amino acid (glutamate) transporter 325434..326621 Chlamydophila pneumoniae J138 919072 NP_300349.1 CDS CPj0290 NC_002491.1 326664 328148 D Na-dependent transporter 326664..328148 Chlamydophila pneumoniae J138 919850 NP_300350.1 CDS incB NC_002491.1 328289 328819 D inclusion membrane protein B 328289..328819 Chlamydophila pneumoniae J138 919073 NP_300351.1 CDS incC NC_002491.1 328850 329461 D inclusion membrane protein C 328850..329461 Chlamydophila pneumoniae J138 919074 NP_300352.1 CDS CPj0293 NC_002491.1 329571 332348 D hypothetical protein 329571..332348 Chlamydophila pneumoniae J138 919071 NP_300353.1 CDS CPj0294 NC_002491.1 332714 333127 D cAMP-dependent protein kinase regulatory subunit 332714..333127 Chlamydophila pneumoniae J138 919070 NP_300354.1 CDS acpP NC_002491.1 333246 333485 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(333246..333485) Chlamydophila pneumoniae J138 919067 NP_300355.1 CDS fabG NC_002491.1 333641 334387 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(333641..334387) Chlamydophila pneumoniae J138 919066 NP_300356.1 CDS fabD NC_002491.1 334393 335319 R ACP S-malonyltransferase complement(334393..335319) Chlamydophila pneumoniae J138 919078 NP_300357.1 CDS fabH NC_002491.1 335336 336343 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(335336..336343) Chlamydophila pneumoniae J138 919081 NP_300358.1 CDS recR NC_002491.1 336438 337040 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 336438..337040 Chlamydophila pneumoniae J138 919082 NP_300359.1 CDS yaeT NC_002491.1 337405 339777 D hypothetical protein 337405..339777 Chlamydophila pneumoniae J138 919083 NP_300360.1 CDS CPj0301 NC_002491.1 339872 340387 D hypothetical protein 339872..340387 Chlamydophila pneumoniae J138 919084 NP_300361.1 CDS lpxD NC_002491.1 340409 341491 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 340409..341491 Chlamydophila pneumoniae J138 919085 NP_300362.1 CDS CPj0303 NC_002491.1 341540 342580 R hypothetical protein complement(341540..342580) Chlamydophila pneumoniae J138 919086 NP_300363.1 CDS pdhA NC_002491.1 342755 343783 D pyruvate dehydrogenase alpha 342755..343783 Chlamydophila pneumoniae J138 919080 NP_300364.1 CDS pdhB NC_002491.1 343776 344762 D pyruvate dehydrogenase beta 343776..344762 Chlamydophila pneumoniae J138 919079 NP_300365.1 CDS pdhC NC_002491.1 344767 346056 D Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 344767..346056 Chlamydophila pneumoniae J138 919077 NP_300366.1 CDS glgP NC_002491.1 346134 348608 R glycogen phosphorylase complement(346134..348608) Chlamydophila pneumoniae J138 919076 NP_300367.1 CDS CPj0308 NC_002491.1 348856 349221 D hypothetical protein 348856..349221 Chlamydophila pneumoniae J138 919075 NP_300368.1 CDS dnaA NC_002491.1 349214 350596 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA complement(349214..350596) Chlamydophila pneumoniae J138 919087 NP_300369.1 CDS 60IM NC_002491.1 350668 353055 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(350668..353055) Chlamydophila pneumoniae J138 919088 NP_300370.1 CDS lgt NC_002491.1 353194 354060 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(353194..354060) Chlamydophila pneumoniae J138 919089 NP_300371.1 CDS CPj0312 NC_002491.1 354146 354601 D hypothetical protein 354146..354601 Chlamydophila pneumoniae J138 919859 NP_300372.1 CDS acpS NC_002491.1 354612 354980 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 354612..354980 Chlamydophila pneumoniae J138 919853 NP_300373.1 CDS trxB NC_002491.1 354972 355907 R thioredoxin reductase complement(354972..355907) Chlamydophila pneumoniae J138 919090 NP_300374.1 CDS rpsA NC_002491.1 356599 358341 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 356599..358341 Chlamydophila pneumoniae J138 919091 NP_300375.1 CDS nusA NC_002491.1 358442 359746 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 358442..359746 Chlamydophila pneumoniae J138 919092 NP_300376.1 CDS infB NC_002491.1 359703 362375 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 359703..362375 Chlamydophila pneumoniae J138 919093 NP_300377.1 CDS rbfA NC_002491.1 362389 362751 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 362389..362751 Chlamydophila pneumoniae J138 919094 NP_300378.1 CDS truB NC_002491.1 362797 363504 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 362797..363504 Chlamydophila pneumoniae J138 919095 NP_300379.1 CDS ribF NC_002491.1 363482 364408 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 363482..364408 Chlamydophila pneumoniae J138 919096 NP_300380.1 CDS ychF NC_002491.1 364386 365480 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(364386..365480) Chlamydophila pneumoniae J138 919097 NP_300381.1 CDS yscU NC_002491.1 365871 366953 D type III secretion system protein 365871..366953 Chlamydophila pneumoniae J138 919098 NP_300382.1 CDS lcrD NC_002491.1 366953 369085 D low calcium response D 366953..369085 Chlamydophila pneumoniae J138 919099 NP_300383.1 CDS lcrE NC_002491.1 369114 370313 D low calcium response E 369114..370313 Chlamydophila pneumoniae J138 919100 NP_300384.1 CDS sycE NC_002491.1 370330 370773 D secretion chaperone 370330..370773 Chlamydophila pneumoniae J138 919101 NP_300385.1 CDS malQ NC_002491.1 370770 372350 D amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 370770..372350 Chlamydophila pneumoniae J138 919102 NP_300386.1 CDS rpmB NC_002491.1 372567 372836 D required for 70S ribosome assembly; 50S ribosomal protein L28 372567..372836 Chlamydophila pneumoniae J138 919103 NP_300387.1 CDS CPj0328 NC_002491.1 372863 374617 D hypothetical protein 372863..374617 Chlamydophila pneumoniae J138 919104 NP_300388.1 CDS CPj0329 NC_002491.1 374710 375771 D phopholipase D superfamily protein 374710..375771 Chlamydophila pneumoniae J138 919105 NP_300389.1 CDS CPj0330 NC_002491.1 375821 376297 R hypothetical protein complement(375821..376297) Chlamydophila pneumoniae J138 919106 NP_300390.1 CDS CPj0331 NC_002491.1 376320 378059 R hypothetical protein complement(376320..378059) Chlamydophila pneumoniae J138 919299 NP_300391.1 CDS CPj0332 NC_002491.1 378155 378277 R hypothetical protein complement(378155..378277) Chlamydophila pneumoniae J138 919296 NP_300392.1 CDS CPj0333 NC_002491.1 378419 378712 R LtuB protein complement(378419..378712) Chlamydophila pneumoniae J138 919107 NP_300393.1 CDS CPj0334 NC_002491.1 378933 379448 D hypothetical protein 378933..379448 Chlamydophila pneumoniae J138 919108 NP_300394.1 CDS folD NC_002491.1 379439 380299 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 379439..380299 Chlamydophila pneumoniae J138 919109 NP_300395.1 CDS yojL NC_002491.1 380272 381216 D hypothetical protein 380272..381216 Chlamydophila pneumoniae J138 919110 NP_300396.1 CDS smpB NC_002491.1 381194 381649 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(381194..381649) Chlamydophila pneumoniae J138 919111 NP_300397.1 CDS dnaN NC_002491.1 381900 383000 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 381900..383000 Chlamydophila pneumoniae J138 919112 NP_300398.1 CDS CPj0339 NC_002491.1 383036 383659 D ATPase 383036..383659 Chlamydophila pneumoniae J138 919113 NP_300399.1 CDS CPj0340 NC_002491.1 383476 384120 D hypothetical protein 383476..384120 Chlamydophila pneumoniae J138 919114 NP_300400.1 CDS CPj0342 NC_002491.1 384244 385221 D leader 19 peptide; hypothetical protein 384244..385221 Chlamydophila pneumoniae J138 919115 NP_300401.1 CDS yaeL NC_002491.1 385178 387043 R metalloprotease complement(385178..387043) Chlamydophila pneumoniae J138 919116 NP_300402.1 CDS yaeM NC_002491.1 387056 388195 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(387056..388195) Chlamydophila pneumoniae J138 919117 NP_300403.1 CDS ytgD NC_002491.1 388324 389298 R hypothetical protein complement(388324..389298) Chlamydophila pneumoniae J138 919118 NP_300404.1 CDS ytgC NC_002491.1 389298 390644 R hypothetical protein complement(389298..390644) Chlamydophila pneumoniae J138 919119 NP_300405.1 CDS ytgB_1 NC_002491.1 390647 391426 R rRNA methylase complement(390647..391426) Chlamydophila pneumoniae J138 919120 NP_300406.1 CDS ytgA NC_002491.1 391410 392393 R solute-binding family protein complement(391410..392393) Chlamydophila pneumoniae J138 919121 NP_300407.1 CDS CPj0350 NC_002491.1 392889 393395 D hypothetical protein 392889..393395 Chlamydophila pneumoniae J138 919123 NP_300408.1 CDS adt_1 NC_002491.1 393596 395143 D ADP/ATP translocase 393596..395143 Chlamydophila pneumoniae J138 919124 NP_300409.1 CDS CPj0352 NC_002491.1 395282 396541 D hypothetical protein 395282..396541 Chlamydophila pneumoniae J138 919125 NP_300410.1 CDS CPj0353 NC_002491.1 396601 396846 D hypothetical protein 396601..396846 Chlamydophila pneumoniae J138 919126 NP_300411.1 CDS CPj0354 NC_002491.1 396875 398218 D hypothetical protein 396875..398218 Chlamydophila pneumoniae J138 919127 NP_300412.1 CDS CPj0355 NC_002491.1 398296 399597 R hypothetical protein complement(398296..399597) Chlamydophila pneumoniae J138 919274 NP_300413.1 CDS CPj0356 NC_002491.1 399815 400168 R hypothetical protein complement(399815..400168) Chlamydophila pneumoniae J138 919128 NP_300414.1 CDS CPj0357 NC_002491.1 400175 401026 R hypothetical protein complement(400175..401026) Chlamydophila pneumoniae J138 919129 NP_300415.1 CDS CPj0358 NC_002491.1 401284 401460 R hypothetical protein complement(401284..401460) Chlamydophila pneumoniae J138 919862 NP_300416.1 CDS lepA NC_002491.1 401721 403529 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 401721..403529 Chlamydophila pneumoniae J138 919861 NP_300417.1 CDS gnd NC_002491.1 403628 405067 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(403628..405067) Chlamydophila pneumoniae J138 919866 NP_300418.1 CDS tyrS NC_002491.1 405088 406356 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(405088..406356) Chlamydophila pneumoniae J138 919130 NP_300419.1 CDS rpsD NC_002491.1 406761 407534 R expressed in response to temperature increase; may be involved in expression of genes involved in the developmental cycle of Chlamydia; RNA polymerase sigma factor sigma-28 complement(406761..407534) Chlamydophila pneumoniae J138 919288 NP_300420.1 CDS flhA NC_002491.1 407649 409397 R type III secretion system protein complement(407649..409397) Chlamydophila pneumoniae J138 919283 NP_300421.1 CDS fer4 NC_002491.1 409675 409950 D ferredoxin IV 409675..409950 Chlamydophila pneumoniae J138 919132 NP_300422.1 CDS CPj0365 NC_002491.1 410237 411256 D hypothetical protein 410237..411256 Chlamydophila pneumoniae J138 919844 NP_300423.1 CDS CPj0366 NC_002491.1 411685 412152 D hypothetical protein 411685..412152 Chlamydophila pneumoniae J138 919845 NP_300424.1 CDS CPj0367 NC_002491.1 412811 413548 D hypothetical protein 412811..413548 Chlamydophila pneumoniae J138 919872 NP_300425.1 CDS CPj0368 NC_002491.1 413499 413819 D hypothetical protein 413499..413819 Chlamydophila pneumoniae J138 919871 NP_300426.1 CDS CPj0369 NC_002491.1 414060 415274 D hypothetical protein 414060..415274 Chlamydophila pneumoniae J138 919869 NP_300427.1 CDS CPj0370 NC_002491.1 415509 416624 D hypothetical protein 415509..416624 Chlamydophila pneumoniae J138 919268 NP_300428.1 CDS CPj0371 NC_002491.1 416856 417215 D hypothetical protein 416856..417215 Chlamydophila pneumoniae J138 919265 NP_300429.1 CDS CPj0372 NC_002491.1 417396 417713 D hypothetical protein 417396..417713 Chlamydophila pneumoniae J138 919259 NP_300430.1 CDS gcpE NC_002491.1 418089 419930 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-clclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; these proteins appear to consist of duplicate domains as compared to Escherichia coli IspG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 418089..419930 Chlamydophila pneumoniae J138 919262 NP_300431.1 CDS CPj0374 NC_002491.1 419927 420673 D hypothetical protein 419927..420673 Chlamydophila pneumoniae J138 919249 NP_300432.1 CDS CPj0375 NC_002491.1 420830 421327 D hypothetical protein 420830..421327 Chlamydophila pneumoniae J138 919246 NP_300433.1 CDS CPj0376 NC_002491.1 421563 422006 D hypothetical protein 421563..422006 Chlamydophila pneumoniae J138 919192 NP_300434.1 CDS sucB_1 NC_002491.1 422053 423147 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(422053..423147) Chlamydophila pneumoniae J138 919191 NP_300435.1 CDS sucA NC_002491.1 423151 425877 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 complement(423151..425877) Chlamydophila pneumoniae J138 919185 NP_300436.1 CDS CPj0379 NC_002491.1 426031 426477 D hypothetical protein 426031..426477 Chlamydophila pneumoniae J138 919740 NP_300437.1 CDS hemN_1 NC_002491.1 426467 427588 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 426467..427588 Chlamydophila pneumoniae J138 919729 NP_300438.1 CDS CPj0381 NC_002491.1 427743 429518 R hypothetical protein complement(427743..429518) Chlamydophila pneumoniae J138 919198 NP_300439.1 CDS yabC_1 NC_002491.1 429742 430458 R SAM-dependent methytransferase complement(429742..430458) Chlamydophila pneumoniae J138 919205 NP_300440.1 CDS CPj0383 NC_002491.1 430455 431402 R hypothetical protein complement(430455..431402) Chlamydophila pneumoniae J138 919202 NP_300441.1 CDS hctB NC_002491.1 431568 432086 R histone-like protein 2 complement(431568..432086) Chlamydophila pneumoniae J138 919233 NP_300442.1 CDS pepA NC_002491.1 432228 433727 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(432228..433727) Chlamydophila pneumoniae J138 919228 NP_300443.1 CDS ssb NC_002491.1 433752 434234 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(433752..434234) Chlamydophila pneumoniae J138 919225 NP_300444.1 CDS CPj0387 NC_002491.1 434405 434905 R hypothetical protein complement(434405..434905) Chlamydophila pneumoniae J138 919222 NP_300445.1 CDS glgX NC_002491.1 435038 437032 D debranching; glycogen hydrolase 435038..437032 Chlamydophila pneumoniae J138 919236 NP_300446.1 CDS CPj0389 NC_002491.1 437025 437843 R hypothetical protein complement(437025..437843) Chlamydophila pneumoniae J138 919213 NP_300447.1 CDS ruvB NC_002491.1 437840 438853 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(437840..438853) Chlamydophila pneumoniae J138 919210 NP_300448.1 CDS CPj0391 NC_002491.1 439216 439401 R hypothetical protein complement(439216..439401) Chlamydophila pneumoniae J138 919242 NP_300449.1 CDS dcd NC_002491.1 439523 440095 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 439523..440095 Chlamydophila pneumoniae J138 919239 NP_300450.1 CDS CPj0393 NC_002491.1 440088 440435 D hypothetical protein 440088..440435 Chlamydophila pneumoniae J138 919134 NP_300451.1 CDS tlyC_1 NC_002491.1 440445 441680 D hemolysin homolog; hypothetical protein 440445..441680 Chlamydophila pneumoniae J138 919133 NP_300452.1 CDS CPj0395 NC_002491.1 441673 442887 D hypothetical protein 441673..442887 Chlamydophila pneumoniae J138 919122 NP_300453.1 CDS yhfO NC_002491.1 442947 444062 R NifS-related aminotransferase complement(442947..444062) Chlamydophila pneumoniae J138 919138 NP_300454.1 CDS CPj0397 NC_002491.1 444087 444824 R PP2C phosphatase complement(444087..444824) Chlamydophila pneumoniae J138 919137 NP_300455.1 CDS CPj0398 NC_002491.1 445242 445412 D hypothetical protein 445242..445412 Chlamydophila pneumoniae J138 919136 NP_300456.1 CDS CPj0399 NC_002491.1 445588 446235 D hypothetical protein 445588..446235 Chlamydophila pneumoniae J138 919135 NP_300457.1 CDS CPj0400 NC_002491.1 446245 447018 D hypothetical protein 446245..447018 Chlamydophila pneumoniae J138 919143 NP_300458.1 CDS CPj0401 NC_002491.1 447201 447593 R hypothetical protein complement(447201..447593) Chlamydophila pneumoniae J138 919142 NP_300459.1 CDS mutY NC_002491.1 447594 448703 R adenine glycosylase complement(447594..448703) Chlamydophila pneumoniae J138 919141 NP_300460.1 CDS yceC NC_002491.1 448724 449422 D pseudouridine synthase 448724..449422 Chlamydophila pneumoniae J138 919140 NP_300461.1 CDS CPj0404 NC_002491.1 449577 450596 R hypothetical protein complement(449577..450596) Chlamydophila pneumoniae J138 919139 NP_300462.1 CDS CPj0405 NC_002491.1 450672 451448 R hypothetical protein complement(450672..451448) Chlamydophila pneumoniae J138 919147 NP_300463.1 CDS fabI NC_002491.1 451678 452577 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 451678..452577 Chlamydophila pneumoniae J138 919146 NP_300464.1 CDS CPj0407 NC_002491.1 452564 453451 R HAD family phosphatase complement(452564..453451) Chlamydophila pneumoniae J138 919145 NP_300465.1 CDS CPj0408 NC_002491.1 453814 454293 D hypothetical protein 453814..454293 Chlamydophila pneumoniae J138 919144 NP_300466.1 CDS CPj0409 NC_002491.1 454354 454839 D hypothetical protein 454354..454839 Chlamydophila pneumoniae J138 919151 NP_300467.1 CDS dnaQ_1 NC_002491.1 454832 455545 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 454832..455545 Chlamydophila pneumoniae J138 919150 NP_300468.1 CDS CPj0411 NC_002491.1 455542 456321 D hypothetical protein 455542..456321 Chlamydophila pneumoniae J138 919149 NP_300469.1 CDS CPj0412 NC_002491.1 456299 456958 D hypothetical protein 456299..456958 Chlamydophila pneumoniae J138 919148 NP_300470.1 CDS msbA NC_002491.1 456933 458912 R ABC transporter ATP-binding protein complement(456933..458912) Chlamydophila pneumoniae J138 919156 NP_300471.1 CDS accA NC_002491.1 458878 459852 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(458878..459852) Chlamydophila pneumoniae J138 919155 NP_300472.1 CDS CPj0415 NC_002491.1 459927 461207 R hypothetical protein complement(459927..461207) Chlamydophila pneumoniae J138 919154 NP_300473.1 CDS himD NC_002491.1 461263 461565 R integration host factor alpha complement(461263..461565) Chlamydophila pneumoniae J138 919153 NP_300474.1 CDS amiA NC_002491.1 461950 462744 R N-acetylmuramoyl alanine amidase complement(461950..462744) Chlamydophila pneumoniae J138 919162 NP_300475.1 CDS murE NC_002491.1 462659 464110 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(462659..464110) Chlamydophila pneumoniae J138 919161 NP_300476.1 CDS pbp3 NC_002491.1 464583 466544 R transglycosylase/transpeptidase complement(464583..466544) Chlamydophila pneumoniae J138 919160 NP_300477.1 CDS CPj0420 NC_002491.1 466531 466818 R hypothetical protein complement(466531..466818) Chlamydophila pneumoniae J138 919159 NP_300478.1 CDS mraW NC_002491.1 466815 467708 R S-adenosyl-methyltransferase MraW complement(466815..467708) Chlamydophila pneumoniae J138 919158 NP_300479.1 CDS CPj0422 NC_002491.1 467952 468497 D hypothetical protein 467952..468497 Chlamydophila pneumoniae J138 919157 NP_300480.1 CDS CPj0423 NC_002491.1 468501 468929 D hypothetical protein 468501..468929 Chlamydophila pneumoniae J138 919865 NP_300481.1 CDS dnaA NC_002491.1 469322 470674 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 469322..470674 Chlamydophila pneumoniae J138 919867 NP_300482.1 CDS CPj0425 NC_002491.1 470690 471277 D hypothetical protein 470690..471277 Chlamydophila pneumoniae J138 919848 NP_300483.1 CDS CPj0426 NC_002491.1 471243 471821 R hypothetical protein complement(471243..471821) Chlamydophila pneumoniae J138 919167 NP_300484.1 CDS nqr2 NC_002491.1 471917 473428 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 471917..473428 Chlamydophila pneumoniae J138 919427 NP_300485.1 CDS nqr3 NC_002491.1 473432 474394 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 473432..474394 Chlamydophila pneumoniae J138 919168 NP_300486.1 CDS nqr4 NC_002491.1 474391 475032 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 474391..475032 Chlamydophila pneumoniae J138 919166 NP_300487.1 CDS nqr5 NC_002491.1 475036 475806 D Na(+)-translocating NADH-quinone reductase subunit E 475036..475806 Chlamydophila pneumoniae J138 919165 NP_300488.1 CDS CPj0431 NC_002491.1 475858 476193 R hypothetical protein complement(475858..476193) Chlamydophila pneumoniae J138 919164 NP_300489.1 CDS CPj0432 NC_002491.1 476221 476526 R hypothetical protein complement(476221..476526) Chlamydophila pneumoniae J138 919163 NP_300490.1 CDS gcsH NC_002491.1 476636 476983 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(476636..476983) Chlamydophila pneumoniae J138 919169 NP_300491.1 CDS CPj0434 NC_002491.1 476983 479172 R hypothetical protein complement(476983..479172) Chlamydophila pneumoniae J138 919855 NP_300492.1 CDS CPj0435 NC_002491.1 479182 480612 R phospholipase D complement(479182..480612) Chlamydophila pneumoniae J138 919852 NP_300493.1 CDS lplA_1 NC_002491.1 480609 481328 R lipoate protein ligase-like protein complement(480609..481328) Chlamydophila pneumoniae J138 919725 NP_300494.1 CDS clpC NC_002491.1 481526 484063 D ClpC protease 481526..484063 Chlamydophila pneumoniae J138 919174 NP_300495.1 CDS mnmA NC_002491.1 484041 485126 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(484041..485126) Chlamydophila pneumoniae J138 919172 NP_300496.1 CDS CPj0439 NC_002491.1 485263 485790 D hypothetical protein 485263..485790 Chlamydophila pneumoniae J138 919171 NP_300497.1 CDS CPj0440 NC_002491.1 485815 486453 D hypothetical protein 485815..486453 Chlamydophila pneumoniae J138 919170 NP_300498.1 CDS CPj0441 NC_002491.1 486601 487551 D hypothetical protein 486601..487551 Chlamydophila pneumoniae J138 919179 NP_300499.1 CDS CPj0442 NC_002491.1 487723 488241 D hypothetical protein 487723..488241 Chlamydophila pneumoniae J138 919178 NP_300500.1 CDS CPj0443 NC_002491.1 488439 489692 D hypothetical protein 488439..489692 Chlamydophila pneumoniae J138 919177 NP_300501.1 CDS pmp_6 NC_002491.1 489997 493827 D hypothetical protein 489997..493827 Chlamydophila pneumoniae J138 919176 NP_300502.1 CDS pmp_7 NC_002491.1 494089 496899 D hypothetical protein 494089..496899 Chlamydophila pneumoniae J138 919175 NP_300503.1 CDS pmp_8 NC_002491.1 496943 499735 D hypothetical protein 496943..499735 Chlamydophila pneumoniae J138 919173 NP_300504.1 CDS pmp_9 NC_002491.1 499885 502671 D hypothetical protein 499885..502671 Chlamydophila pneumoniae J138 919184 NP_300505.1 CDS yxjG_2 NC_002491.1 503012 504127 R hypothetical protein complement(503012..504127) Chlamydophila pneumoniae J138 919182 NP_300506.1 CDS pmp_10 NC_002491.1 504644 507430 R hypothetical protein complement(504644..507430) Chlamydophila pneumoniae J138 919183 NP_300507.1 CDS pmp_11 NC_002491.1 507593 510379 D hypothetical protein 507593..510379 Chlamydophila pneumoniae J138 919180 NP_300508.1 CDS pmp_12 NC_002491.1 510637 512181 D hypothetical protein 510637..512181 Chlamydophila pneumoniae J138 919181 NP_300509.1 CDS pmp_13 NC_002491.1 512552 515473 D hypothetical protein 512552..515473 Chlamydophila pneumoniae J138 919193 NP_300510.1 CDS pmp_14 NC_002491.1 515500 518436 D hypothetical protein 515500..518436 Chlamydophila pneumoniae J138 919190 NP_300511.1 CDS CPj0456 NC_002491.1 518773 520851 R hypothetical protein complement(518773..520851) Chlamydophila pneumoniae J138 919188 NP_300512.1 CDS CPj0457 NC_002491.1 521295 523184 R hypothetical protein complement(521295..523184) Chlamydophila pneumoniae J138 919189 NP_300513.1 CDS CPj0458 NC_002491.1 523552 525639 R hypothetical protein complement(523552..525639) Chlamydophila pneumoniae J138 919186 NP_300514.1 CDS CPj0459 NC_002491.1 525935 526324 R hypothetical protein complement(525935..526324) Chlamydophila pneumoniae J138 919187 NP_300515.1 CDS CPj0460 NC_002491.1 526308 527159 R hypothetical protein complement(526308..527159) Chlamydophila pneumoniae J138 919200 NP_300516.1 CDS CPj0461 NC_002491.1 527160 527957 R hypothetical protein complement(527160..527957) Chlamydophila pneumoniae J138 919199 NP_300517.1 CDS CPj0462 NC_002491.1 528353 530371 R hypothetical protein complement(528353..530371) Chlamydophila pneumoniae J138 919197 NP_300518.1 CDS CPj0463 NC_002491.1 530507 531676 R hypothetical protein complement(530507..531676) Chlamydophila pneumoniae J138 919194 NP_300519.1 CDS CPj0464 NC_002491.1 531682 532161 R hypothetical protein complement(531682..532161) Chlamydophila pneumoniae J138 919195 NP_300520.1 CDS CPj0465 NC_002491.1 532187 532531 R hypothetical protein complement(532187..532531) Chlamydophila pneumoniae J138 919204 NP_300521.1 CDS pmp_15 NC_002491.1 533043 535859 D hypothetical protein 533043..535859 Chlamydophila pneumoniae J138 919203 NP_300522.1 CDS pmp_16 NC_002491.1 535952 538756 D hypothetical protein 535952..538756 Chlamydophila pneumoniae J138 919201 NP_300523.1 CDS pmp_17.1 NC_002491.1 538951 539754 D hypothetical protein 538951..539754 Chlamydophila pneumoniae J138 919849 NP_300524.1 CDS pmp_17.2 NC_002491.1 539739 540782 D frame-shift with pmp_17.1; hypothetical protein 539739..540782 Chlamydophila pneumoniae J138 919212 NP_300525.1 CDS pmp_17.3 NC_002491.1 540676 541854 D Frame-shift with pmp_17.2; hypothetical protein 540676..541854 Chlamydophila pneumoniae J138 919211 NP_300526.1 CDS pmp_18 NC_002491.1 541883 544723 D hypothetical protein 541883..544723 Chlamydophila pneumoniae J138 919209 NP_300527.1 CDS CPj0472 NC_002491.1 544897 547224 R hypothetical protein complement(544897..547224) Chlamydophila pneumoniae J138 919208 NP_300528.1 CDS CPj0473 NC_002491.1 547386 548912 R hypothetical protein complement(547386..548912) Chlamydophila pneumoniae J138 919207 NP_300529.1 CDS CPj0474 NC_002491.1 549123 550892 R hypothetical protein complement(549123..550892) Chlamydophila pneumoniae J138 919206 NP_300530.1 CDS glgB NC_002491.1 551001 553163 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(551001..553163) Chlamydophila pneumoniae J138 919217 NP_300531.1 CDS CPj0476 NC_002491.1 553174 554163 R hypothetical protein complement(553174..554163) Chlamydophila pneumoniae J138 919216 NP_300532.1 CDS yqeV NC_002491.1 554160 555425 R hypothetical protein complement(554160..555425) Chlamydophila pneumoniae J138 919215 NP_300533.1 CDS hflX NC_002491.1 555526 556944 R GTP binding protein complement(555526..556944) Chlamydophila pneumoniae J138 919214 NP_300534.1 CDS phnP NC_002491.1 556932 557744 R metal dependent hydrolase complement(556932..557744) Chlamydophila pneumoniae J138 919221 NP_300535.1 CDS CPj0480 NC_002491.1 557966 558622 R hypothetical protein complement(557966..558622) Chlamydophila pneumoniae J138 919220 NP_300536.1 CDS CPj0481 NC_002491.1 558655 560265 R hypothetical protein complement(558655..560265) Chlamydophila pneumoniae J138 919219 NP_300537.1 CDS artJ NC_002491.1 560277 561056 R arginine periplasmic binding protein complement(560277..561056) Chlamydophila pneumoniae J138 919218 NP_300538.1 CDS CPj0483 NC_002491.1 561155 564286 D hypothetical protein 561155..564286 Chlamydophila pneumoniae J138 919227 NP_300539.1 CDS aroG NC_002491.1 564289 565146 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 564289..565146 Chlamydophila pneumoniae J138 919226 NP_300540.1 CDS CPj0485 NC_002491.1 565357 565551 D hypothetical protein 565357..565551 Chlamydophila pneumoniae J138 919224 NP_300541.1 CDS CPj0486 NC_002491.1 565721 567103 R hypothetical protein complement(565721..567103) Chlamydophila pneumoniae J138 919223 NP_300542.1 CDS CPj0487 NC_002491.1 567428 569059 R hypothetical protein complement(567428..569059) Chlamydophila pneumoniae J138 919235 NP_300543.1 CDS ycfF NC_002491.1 569083 569415 R HIT family hydrolase complement(569083..569415) Chlamydophila pneumoniae J138 919234 NP_300544.1 CDS CPj0489 NC_002491.1 569412 570284 R hypothetical protein complement(569412..570284) Chlamydophila pneumoniae J138 919232 NP_300545.1 CDS CPj0490 NC_002491.1 570598 572655 D hypothetical protein 570598..572655 Chlamydophila pneumoniae J138 919231 NP_300546.1 CDS CPj0491 NC_002491.1 572652 573671 R hypothetical protein complement(572652..573671) Chlamydophila pneumoniae J138 919229 NP_300547.1 CDS CPj0492 NC_002491.1 573971 574126 D hypothetical protein 573971..574126 Chlamydophila pneumoniae J138 919241 NP_300548.1 CDS CPj0493 NC_002491.1 574171 574323 R hypothetical protein complement(574171..574323) Chlamydophila pneumoniae J138 919240 NP_300549.1 CDS CPj0494 NC_002491.1 574462 574683 R hypothetical protein complement(574462..574683) Chlamydophila pneumoniae J138 919238 NP_300550.1 CDS aspC NC_002491.1 574922 576115 D catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase 574922..576115 Chlamydophila pneumoniae J138 919237 NP_300551.1 CDS CPj0496 NC_002491.1 576112 577134 D hypothetical protein 576112..577134 Chlamydophila pneumoniae J138 919248 NP_300552.1 CDS CPj0497 NC_002491.1 577136 577408 R hypothetical protein complement(577136..577408) Chlamydophila pneumoniae J138 919247 NP_300553.1 CDS CPj0498 NC_002491.1 577401 578354 R hypothetical protein complement(577401..578354) Chlamydophila pneumoniae J138 919245 NP_300554.1 CDS CPj0499 NC_002491.1 578522 579679 R hypothetical protein complement(578522..579679) Chlamydophila pneumoniae J138 919244 NP_300555.1 CDS proS NC_002491.1 579979 581685 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 579979..581685 Chlamydophila pneumoniae J138 919243 NP_300556.1 CDS hrcA NC_002491.1 581777 582973 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 581777..582973 Chlamydophila pneumoniae J138 919255 NP_300557.1 CDS grpE NC_002491.1 582970 583524 D HSP-70 cofactor 582970..583524 Chlamydophila pneumoniae J138 919254 NP_300558.1 CDS dnaK NC_002491.1 583554 585536 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 583554..585536 Chlamydophila pneumoniae J138 919252 NP_300559.1 CDS vacB NC_002491.1 585807 587837 D ribonuclease 585807..587837 Chlamydophila pneumoniae J138 919251 NP_300560.1 CDS CPj0505 NC_002491.1 587839 588429 D 3-methyladenine DNA glycosylase 587839..588429 Chlamydophila pneumoniae J138 919250 NP_300561.1 CDS CPj0506 NC_002491.1 588492 589163 D hypothetical protein 588492..589163 Chlamydophila pneumoniae J138 919261 NP_300562.1 CDS CPj0507 NC_002491.1 589281 589445 D hypothetical protein 589281..589445 Chlamydophila pneumoniae J138 919260 NP_300563.1 CDS CPj0508 NC_002491.1 589462 589623 D hypothetical protein 589462..589623 Chlamydophila pneumoniae J138 919258 NP_300564.1 CDS CPj0509 NC_002491.1 589655 590131 D metalloprotein 589655..590131 Chlamydophila pneumoniae J138 919257 NP_300565.1 CDS tlyC_2 NC_002491.1 590133 591296 D hypothetical protein 590133..591296 Chlamydophila pneumoniae J138 919256 NP_300566.1 CDS rsbV_1 NC_002491.1 591461 591811 D sigma regulatory factor 591461..591811 Chlamydophila pneumoniae J138 919267 NP_300567.1 CDS CPj0512 NC_002491.1 591873 593735 D hypothetical protein 591873..593735 Chlamydophila pneumoniae J138 919266 NP_300568.1 CDS CPj0513 NC_002491.1 593967 595076 D hypothetical protein 593967..595076 Chlamydophila pneumoniae J138 919264 NP_300569.1 CDS CPj0514 NC_002491.1 595049 595843 D hypothetical protein 595049..595843 Chlamydophila pneumoniae J138 919263 NP_300570.2 CDS ubiE NC_002491.1 595791 596504 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 595791..596504 Chlamydophila pneumoniae J138 919272 NP_300571.1 CDS CPj0516 NC_002491.1 596572 598134 R hypothetical protein complement(596572..598134) Chlamydophila pneumoniae J138 919271 NP_300572.1 CDS CPj0517 NC_002491.1 598112 598951 R hypothetical protein complement(598112..598951) Chlamydophila pneumoniae J138 919270 NP_300573.1 CDS CPj0518 NC_002491.1 599149 600123 R hypothetical protein complement(599149..600123) Chlamydophila pneumoniae J138 919269 NP_300574.1 CDS dapF NC_002491.1 600221 600994 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(600221..600994) Chlamydophila pneumoniae J138 919276 NP_300575.1 CDS clpP_1 NC_002491.1 600963 601538 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(600963..601538) Chlamydophila pneumoniae J138 919275 NP_300576.1 CDS glyA NC_002491.1 601558 603117 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(601558..603117) Chlamydophila pneumoniae J138 919273 NP_300577.1 CDS hemD NC_002491.1 603307 603978 D catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 603307..603978 Chlamydophila pneumoniae J138 919282 NP_300578.1 CDS CPj0523 NC_002491.1 604043 604375 D hypothetical protein 604043..604375 Chlamydophila pneumoniae J138 919281 NP_300579.1 CDS CPj0524 NC_002491.1 604423 605502 D hypothetical protein 604423..605502 Chlamydophila pneumoniae J138 919280 NP_300580.1 CDS CPj0525 NC_002491.1 605842 606606 D hypothetical protein 605842..606606 Chlamydophila pneumoniae J138 919279 NP_300581.1 CDS kpsF NC_002491.1 607027 608016 R GutQ/KpsF family sugar-P isomerase complement(607027..608016) Chlamydophila pneumoniae J138 919278 NP_300582.1 CDS sucB_2 NC_002491.1 608043 609224 R Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(608043..609224) Chlamydophila pneumoniae J138 919277 NP_300583.1 CDS gltT NC_002491.1 609238 610482 R glutamate symporter complement(609238..610482) Chlamydophila pneumoniae J138 919290 NP_300584.1 CDS lpxK NC_002491.1 610482 611579 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(610482..611579) Chlamydophila pneumoniae J138 919289 NP_300585.1 CDS spoU_1 NC_002491.1 611777 612574 R rRNA methylase complement(611777..612574) Chlamydophila pneumoniae J138 919286 NP_300586.1 CDS CPj0531 NC_002491.1 612562 613389 R SAM dependent methyltransferase complement(612562..613389) Chlamydophila pneumoniae J138 919285 NP_300587.1 CDS ribC NC_002491.1 613392 613994 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(613392..613994) Chlamydophila pneumoniae J138 919295 NP_300588.1 CDS nrdR NC_002491.1 614250 614708 D NrdR family transcriptional regulator 614250..614708 Chlamydophila pneumoniae J138 919294 NP_300589.1 CDS dksA NC_002491.1 614733 615107 D DnaK suppressor 614733..615107 Chlamydophila pneumoniae J138 919293 NP_300590.1 CDS lspA NC_002491.1 615113 615619 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 615113..615619 Chlamydophila pneumoniae J138 919291 NP_300591.1 CDS dagA_1 NC_002491.1 615665 617014 D D-Ala/Gly permease 615665..617014 Chlamydophila pneumoniae J138 919292 NP_300592.1 CDS CPj0537 NC_002491.1 617153 617512 D hypothetical protein 617153..617512 Chlamydophila pneumoniae J138 919300 NP_300593.1 CDS CPj0538 NC_002491.1 617532 617834 D hypothetical protein 617532..617834 Chlamydophila pneumoniae J138 919302 NP_300594.1 CDS pmp_19 NC_002491.1 618025 620868 D hypothetical protein 618025..620868 Chlamydophila pneumoniae J138 919301 NP_300595.1 CDS pmp_20 NC_002491.1 621014 626185 D hypothetical protein 621014..626185 Chlamydophila pneumoniae J138 919298 NP_300596.1 CDS CPj0541 NC_002491.1 626490 627326 D solute binding protein 626490..627326 Chlamydophila pneumoniae J138 919305 NP_300597.1 CDS CPj0542 NC_002491.1 627323 628060 D ABC transporter ATPase 627323..628060 Chlamydophila pneumoniae J138 919303 NP_300598.1 CDS CPj0543 NC_002491.1 628045 628926 D metal transport protein 628045..628926 Chlamydophila pneumoniae J138 919287 NP_300599.1 CDS obgE NC_002491.1 628842 629849 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(628842..629849) Chlamydophila pneumoniae J138 919230 NP_300600.1 CDS rpmA NC_002491.1 629950 630204 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(629950..630204) Chlamydophila pneumoniae J138 919284 NP_300601.1 CDS rplU NC_002491.1 630229 630549 R 50S ribosomal protein L21 complement(630229..630549) Chlamydophila pneumoniae J138 919196 NP_300602.1 CDS ispF NC_002491.1 630981 631511 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 630981..631511 Chlamydophila pneumoniae J138 919308 NP_300603.1 CDS cysJ NC_002491.1 631508 632551 R sulfite reductase complement(631508..632551) Chlamydophila pneumoniae J138 919307 NP_300604.1 CDS rpsJ NC_002491.1 632572 632889 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(632572..632889) Chlamydophila pneumoniae J138 919306 NP_300605.1 CDS fusA NC_002491.1 632897 634981 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(632897..634981) Chlamydophila pneumoniae J138 919304 NP_300606.2 CDS rs7 NC_002491.1 <635019 635489 R partial; insertion of G in polyrun G2 in the last codon, leading to elongation by 9 aa; binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(<635019..635489) Chlamydophila pneumoniae J138 919310 NP_300607.1 CDS rpsL NC_002491.1 635537 635908 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(635537..635908) Chlamydophila pneumoniae J138 919313 NP_300608.1 CDS CPj0553 NC_002491.1 636130 637068 R hypothetical protein complement(636130..637068) Chlamydophila pneumoniae J138 919312 NP_300609.1 CDS CPj0554 NC_002491.1 637175 637465 D hypothetical protein 637175..637465 Chlamydophila pneumoniae J138 919311 NP_300610.1 CDS tsp NC_002491.1 637619 639565 D tail-specific protease 637619..639565 Chlamydophila pneumoniae J138 919309 NP_300611.1 CDS crpA NC_002491.1 639643 640233 R hypothetical protein complement(639643..640233) Chlamydophila pneumoniae J138 919317 NP_300612.1 CDS omcB NC_002491.1 640512 642182 R hypothetical protein complement(640512..642182) Chlamydophila pneumoniae J138 919316 NP_300613.1 CDS omcA NC_002491.1 642349 642621 R hypothetical protein complement(642349..642621) Chlamydophila pneumoniae J138 919315 NP_300614.1 CDS CPj0559 NC_002491.1 643063 643251 D hypothetical protein 643063..643251 Chlamydophila pneumoniae J138 919314 NP_300615.1 CDS gltX NC_002491.1 643416 644933 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(643416..644933) Chlamydophila pneumoniae J138 919322 NP_300616.1 CDS euo NC_002491.1 645189 645725 R hypothetical protein complement(645189..645725) Chlamydophila pneumoniae J138 919323 NP_300617.1 CDS CPj0562 NC_002491.1 646236 647357 R hypothetical protein complement(646236..647357) Chlamydophila pneumoniae J138 919321 NP_300618.1 CDS recJ NC_002491.1 647611 649377 R ssDNA exonuclease RecJ complement(647611..649377) Chlamydophila pneumoniae J138 919320 NP_300619.1 CDS secD_secF NC_002491.1 649463 653671 R part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; in these organisms there is an unknown N-terminal domain; preprotein translocase subunits SecD/SecF complement(649463..653671) Chlamydophila pneumoniae J138 919319 NP_300620.1 CDS CPj0565 NC_002491.1 653851 654951 R hypothetical protein complement(653851..654951) Chlamydophila pneumoniae J138 919327 NP_300621.1 CDS yaeS NC_002491.1 655462 656214 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 655462..656214 Chlamydophila pneumoniae J138 919326 NP_300622.1 CDS cdsA NC_002491.1 656215 657141 D phosphatidate cytidylyltransferase 656215..657141 Chlamydophila pneumoniae J138 919325 NP_300623.1 CDS cmk NC_002491.1 657138 657788 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 657138..657788 Chlamydophila pneumoniae J138 919324 NP_300624.1 CDS plsC NC_002491.1 657785 658423 D glycerol-3-P acyltransferase 657785..658423 Chlamydophila pneumoniae J138 919334 NP_300625.1 CDS argS NC_002491.1 658428 660113 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 658428..660113 Chlamydophila pneumoniae J138 919329 NP_300626.1 CDS murA NC_002491.1 660067 661443 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(660067..661443) Chlamydophila pneumoniae J138 919328 NP_300627.1 CDS CPj0572 NC_002491.1 661673 663940 D hypothetical protein 661673..663940 Chlamydophila pneumoniae J138 919332 NP_300628.1 CDS yebC NC_002491.1 664009 664725 R hypothetical protein complement(664009..664725) Chlamydophila pneumoniae J138 919318 NP_300629.1 CDS CPj0574 NC_002491.1 664712 665266 R hypothetical protein complement(664712..665266) Chlamydophila pneumoniae J138 919851 NP_300630.1 CDS yhhY NC_002491.1 665300 665815 R amino group acetyl transferase complement(665300..665815) Chlamydophila pneumoniae J138 919337 NP_300631.1 CDS prfB NC_002491.1 665812 666864 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(665812..666864) Chlamydophila pneumoniae J138 919336 NP_300632.1 CDS CPj0576B NC_002491.1 666708 666956 D natural UGA frame-shift 666708..666956 Chlamydophila pneumoniae J138 919333 NP_300633.1 CDS CPj0577 NC_002491.1 667216 667479 D SWIB (YM74) complex protein 667216..667479 Chlamydophila pneumoniae J138 919331 NP_300634.1 CDS yaeI NC_002491.1 667727 668689 D phosphohydrolase 667727..668689 Chlamydophila pneumoniae J138 919339 NP_300635.1 CDS ispD NC_002491.1 668682 669317 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 668682..669317 Chlamydophila pneumoniae J138 919340 NP_300636.1 CDS truA NC_002491.1 669314 670117 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 669314..670117 Chlamydophila pneumoniae J138 919338 NP_300637.1 CDS CPj0581 NC_002491.1 670063 670755 R phosphoglycolate phosphatase complement(670063..670755) Chlamydophila pneumoniae J138 919335 NP_300638.1 CDS CPj0582 NC_002491.1 670824 671501 D hypothetical protein 670824..671501 Chlamydophila pneumoniae J138 919330 NP_300639.1 CDS CPj0583 NC_002491.1 671721 672041 D hypothetical protein 671721..672041 Chlamydophila pneumoniae J138 919342 NP_300640.1 CDS atoS NC_002491.1 672028 673122 D 2-component sensor 672028..673122 Chlamydophila pneumoniae J138 919343 NP_300641.1 CDS CPj0585 NC_002491.1 673183 675138 R hypothetical protein complement(673183..675138) Chlamydophila pneumoniae J138 919344 NP_300642.1 CDS atoC NC_002491.1 675347 676507 D 2-component regulator 675347..676507 Chlamydophila pneumoniae J138 919345 NP_300643.1 CDS yvyD NC_002491.1 676762 677448 D hypothetical protein 676762..677448 Chlamydophila pneumoniae J138 919347 NP_300644.1 CDS CPj0588 NC_002491.1 677405 677950 D hypothetical protein 677405..677950 Chlamydophila pneumoniae J138 919348 NP_300645.1 CDS recO NC_002491.1 677961 678719 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 677961..678719 Chlamydophila pneumoniae J138 919350 NP_300646.1 CDS CPj0590 NC_002491.1 678834 679433 R hypothetical protein complement(678834..679433) Chlamydophila pneumoniae J138 919351 NP_300647.1 CDS yagE NC_002491.1 679694 680344 D YagE family protein 679694..680344 Chlamydophila pneumoniae J138 919353 NP_300648.1 CDS yidD NC_002491.1 680474 680785 D hypothetical protein 680474..680785 Chlamydophila pneumoniae J138 919355 NP_300649.1 CDS CPj0593 NC_002491.1 680709 681797 R hypothetical protein complement(680709..681797) Chlamydophila pneumoniae J138 919349 NP_300650.1 CDS pheT NC_002491.1 681904 684282 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 681904..684282 Chlamydophila pneumoniae J138 919356 NP_300651.1 CDS CPj0595 NC_002491.1 684279 685250 D hypothetical protein 684279..685250 Chlamydophila pneumoniae J138 919357 NP_300652.1 CDS ada NC_002491.1 685260 685781 D methyltransferase 685260..685781 Chlamydophila pneumoniae J138 919358 NP_300653.1 CDS oppC_2 NC_002491.1 685797 687536 R oligopeptide permease complement(685797..687536) Chlamydophila pneumoniae J138 919359 NP_300654.1 CDS oppB_2 NC_002491.1 687537 689018 R oligopeptide permease complement(687537..689018) Chlamydophila pneumoniae J138 919360 NP_300655.1 CDS oppA_5 NC_002491.1 689000 691123 R oligopeptide binding lipoprotein complement(689000..691123) Chlamydophila pneumoniae J138 919361 NP_300656.1 CDS CPj0600 NC_002491.1 691145 691468 R hypothetical protein complement(691145..691468) Chlamydophila pneumoniae J138 919362 NP_300657.1 CDS CPj0601 NC_002491.1 692054 692374 R hypothetical protein complement(692054..692374) Chlamydophila pneumoniae J138 919363 NP_300658.1 CDS CPj0602 NC_002491.1 692422 693426 R hypothetical protein complement(692422..693426) Chlamydophila pneumoniae J138 919364 NP_300659.1 CDS hemH NC_002491.1 693526 694509 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 693526..694509 Chlamydophila pneumoniae J138 919365 NP_300660.1 CDS fliY NC_002491.1 694514 695266 R glutamine binding protein complement(694514..695266) Chlamydophila pneumoniae J138 919366 NP_300661.1 CDS yhhF NC_002491.1 695468 696028 R methylase complement(695468..696028) Chlamydophila pneumoniae J138 919367 NP_300662.1 CDS CPj0606 NC_002491.1 696025 696765 R hypothetical protein complement(696025..696765) Chlamydophila pneumoniae J138 919368 NP_300663.1 CDS glgC NC_002491.1 696891 698216 R glucose-1-P adenyltransferase complement(696891..698216) Chlamydophila pneumoniae J138 919369 NP_300664.1 CDS CPj0608 NC_002491.1 698334 698966 R catalyzes the formation of orotidine monophosphate from 5-phosphoribosyl-1-pyrophosphate and orotate; orotate phosphoribosyltransferase complement(698334..698966) Chlamydophila pneumoniae J138 919370 NP_300665.1 CDS CPj0609 NC_002491.1 699026 699310 D hypothetical protein 699026..699310 Chlamydophila pneumoniae J138 919846 NP_300666.1 CDS rho NC_002491.1 699347 700741 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(699347..700741) Chlamydophila pneumoniae J138 919372 NP_300667.1 CDS coaE NC_002491.1 700738 701346 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(700738..701346) Chlamydophila pneumoniae J138 919373 NP_300668.1 CDS polA NC_002491.1 701340 703952 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(701340..703952) Chlamydophila pneumoniae J138 919374 NP_300669.1 CDS sohB NC_002491.1 703976 704977 R protease complement(703976..704977) Chlamydophila pneumoniae J138 919375 NP_300670.1 CDS adt_2 NC_002491.1 705101 706723 R ADP/ATP translocase complement(705101..706723) Chlamydophila pneumoniae J138 919376 NP_300671.1 CDS pgsA_1 NC_002491.1 706952 707458 R glycerol-3-P phosphatidyltransferase complement(706952..707458) Chlamydophila pneumoniae J138 919378 NP_300672.1 CDS dnaB NC_002491.1 708112 709461 D unwinds double stranded DNA; replicative DNA helicase 708112..709461 Chlamydophila pneumoniae J138 919380 NP_300673.1 CDS gidA NC_002491.1 709805 711640 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 709805..711640 Chlamydophila pneumoniae J138 919381 NP_300674.1 CDS lplA_2 NC_002491.1 711627 712334 D lipoate-protein ligase A 711627..712334 Chlamydophila pneumoniae J138 919382 NP_300675.1 CDS ndk NC_002491.1 712331 712765 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(712331..712765) Chlamydophila pneumoniae J138 919383 NP_300676.1 CDS ruvA NC_002491.1 712837 713460 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(712837..713460) Chlamydophila pneumoniae J138 919384 NP_300677.1 CDS ruvC NC_002491.1 713462 713968 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(713462..713968) Chlamydophila pneumoniae J138 919385 NP_300678.1 CDS CPj0622 NC_002491.1 714111 715073 R hypothetical protein complement(714111..715073) Chlamydophila pneumoniae J138 919386 NP_300679.1 CDS CPj0623 NC_002491.1 715481 716314 R hypothetical protein complement(715481..716314) Chlamydophila pneumoniae J138 919388 NP_300680.1 CDS gapA NC_002491.1 716329 717336 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase complement(716329..717336) Chlamydophila pneumoniae J138 919389 NP_300681.1 CDS rplQ NC_002491.1 717378 717806 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(717378..717806) Chlamydophila pneumoniae J138 919390 NP_300682.1 CDS rpoA NC_002491.1 717813 718937 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(717813..718937) Chlamydophila pneumoniae J138 919391 NP_300683.1 CDS rs11 NC_002491.1 718958 719359 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(718958..719359) Chlamydophila pneumoniae J138 919392 NP_300684.1 CDS rpsM NC_002491.1 719381 719749 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(719381..719749) Chlamydophila pneumoniae J138 919393 NP_300685.1 CDS secY NC_002491.1 719805 721178 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(719805..721178) Chlamydophila pneumoniae J138 919394 NP_300686.1 CDS rplO NC_002491.1 721203 721637 R late assembly protein; 50S ribosomal protein L15 complement(721203..721637) Chlamydophila pneumoniae J138 919395 NP_300687.1 CDS rpsE NC_002491.1 721630 722127 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(721630..722127) Chlamydophila pneumoniae J138 919396 NP_300688.1 CDS rplR NC_002491.1 722145 722516 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(722145..722516) Chlamydophila pneumoniae J138 919460 NP_300689.1 CDS rplF NC_002491.1 722527 723078 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(722527..723078) Chlamydophila pneumoniae J138 919488 NP_300690.1 CDS rpsH NC_002491.1 723105 723506 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(723105..723506) Chlamydophila pneumoniae J138 919398 NP_300691.1 CDS rplE NC_002491.1 723524 724066 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(723524..724066) Chlamydophila pneumoniae J138 919400 NP_300692.1 CDS rplX NC_002491.1 724068 724403 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(724068..724403) Chlamydophila pneumoniae J138 919402 NP_300693.1 CDS rplN NC_002491.1 724417 724785 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(724417..724785) Chlamydophila pneumoniae J138 919403 NP_300694.1 CDS rpsQ NC_002491.1 724808 725068 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(724808..725068) Chlamydophila pneumoniae J138 919476 NP_300695.1 CDS rpmC NC_002491.1 725061 725279 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(725061..725279) Chlamydophila pneumoniae J138 918771 NP_300696.1 CDS rplP NC_002491.1 725282 725698 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(725282..725698) Chlamydophila pneumoniae J138 918770 NP_300697.1 CDS rpsC NC_002491.1 725727 726398 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(725727..726398) Chlamydophila pneumoniae J138 919404 NP_300698.1 CDS rplV NC_002491.1 726414 726749 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(726414..726749) Chlamydophila pneumoniae J138 919405 NP_300699.1 CDS rpsS NC_002491.1 726768 727034 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(726768..727034) Chlamydophila pneumoniae J138 919408 NP_300700.1 CDS rplB NC_002491.1 727040 727894 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(727040..727894) Chlamydophila pneumoniae J138 919409 NP_300701.1 CDS rplW NC_002491.1 727916 728251 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(727916..728251) Chlamydophila pneumoniae J138 919410 NP_300702.1 CDS rplD NC_002491.1 728268 728942 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(728268..728942) Chlamydophila pneumoniae J138 919407 NP_300703.2 CDS rplC NC_002491.1 728975 729634 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(728975..729634) Chlamydophila pneumoniae J138 919406 NP_300704.1 CDS CPj0648 NC_002491.1 729923 730924 R hypothetical protein complement(729923..730924) Chlamydophila pneumoniae J138 919401 NP_300705.1 CDS fmt NC_002491.1 731028 731993 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(731028..731993) Chlamydophila pneumoniae J138 919399 NP_300706.1 CDS lpxA NC_002491.1 731983 732822 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(731983..732822) Chlamydophila pneumoniae J138 919411 NP_300707.1 CDS fabZ NC_002491.1 732835 733296 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(732835..733296) Chlamydophila pneumoniae J138 919412 NP_300708.1 CDS lpxC NC_002491.1 733308 734156 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(733308..734156) Chlamydophila pneumoniae J138 919413 NP_300709.1 CDS lnt NC_002491.1 734186 735811 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(734186..735811) Chlamydophila pneumoniae J138 919414 NP_300710.1 CDS yciA NC_002491.1 735821 736288 R acyl-CoA thioesterase complement(735821..736288) Chlamydophila pneumoniae J138 919415 NP_300711.1 CDS dnaQ_2 NC_002491.1 736419 737168 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(736419..737168) Chlamydophila pneumoniae J138 919416 NP_300712.1 CDS CPj0656 NC_002491.1 737193 737372 D hypothetical protein 737193..737372 Chlamydophila pneumoniae J138 919417 NP_300713.1 CDS yjeE NC_002491.1 737369 737794 R hypothetical protein complement(737369..737794) Chlamydophila pneumoniae J138 919418 NP_300714.1 CDS CPj0658 NC_002491.1 737773 738489 R hypothetical protein complement(737773..738489) Chlamydophila pneumoniae J138 919419 NP_300715.1 CDS trxA NC_002491.1 738854 739162 D thioredoxin 738854..739162 Chlamydophila pneumoniae J138 919421 NP_300716.1 CDS spoU_2 NC_002491.1 739178 739648 R rRNA methylase complement(739178..739648) Chlamydophila pneumoniae J138 919422 NP_300717.1 CDS mip NC_002491.1 739645 740421 R FKBP-type peptidylprolyl isomerase complement(739645..740421) Chlamydophila pneumoniae J138 919423 NP_300718.1 CDS aspS NC_002491.1 740490 742244 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(740490..742244) Chlamydophila pneumoniae J138 919397 NP_300719.1 CDS hisS NC_002491.1 742219 743511 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(742219..743511) Chlamydophila pneumoniae J138 919377 NP_300720.1 CDS CPj0664 NC_002491.1 743875 744078 R hypothetical protein complement(743875..744078) Chlamydophila pneumoniae J138 919354 NP_300721.1 CDS uhpC NC_002491.1 744322 745689 D hexosphosphate transport 744322..745689 Chlamydophila pneumoniae J138 919371 NP_300722.1 CDS dnaE NC_002491.1 745709 749431 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 745709..749431 Chlamydophila pneumoniae J138 919424 NP_300723.1 CDS CPj0667 NC_002491.1 749495 750379 R hypothetical protein complement(749495..750379) Chlamydophila pneumoniae J138 919425 NP_300724.1 CDS CPj0668 NC_002491.1 750531 751487 D hypothetical protein 750531..751487 Chlamydophila pneumoniae J138 919426 NP_300725.1 CDS CPj0669 NC_002491.1 751501 752100 D hypothetical protein 751501..752100 Chlamydophila pneumoniae J138 919428 NP_300726.1 CDS rsbW NC_002491.1 752087 752521 D sigma regulatory factor-histidine kinase 752087..752521 Chlamydophila pneumoniae J138 919429 NP_300727.1 CDS CPj0671 NC_002491.1 752524 752952 R hypothetical protein complement(752524..752952) Chlamydophila pneumoniae J138 919430 NP_300728.1 CDS dacF NC_002491.1 753063 754373 D D-Ala-D-Ala carboxypeptidase 753063..754373 Chlamydophila pneumoniae J138 919431 NP_300729.1 CDS CPj0673 NC_002491.1 754609 754788 D hypothetical protein 754609..754788 Chlamydophila pneumoniae J138 919432 NP_300730.1 CDS fmu NC_002491.1 754896 755990 R RNA methyltransferase complement(754896..755990) Chlamydophila pneumoniae J138 919433 NP_300731.1 CDS CPj0675 NC_002491.1 756087 757241 R hypothetical protein complement(756087..757241) Chlamydophila pneumoniae J138 919434 NP_300732.1 CDS CPj0676 NC_002491.1 757370 758539 R hypothetical protein complement(757370..758539) Chlamydophila pneumoniae J138 919435 NP_300733.1 CDS CPj0677 NC_002491.1 758575 759723 R hypothetical protein complement(758575..759723) Chlamydophila pneumoniae J138 919436 NP_300734.1 CDS CPj0678 NC_002491.1 760001 760642 R hypothetical protein complement(760001..760642) Chlamydophila pneumoniae J138 919437 NP_300735.1 CDS pgk NC_002491.1 761044 762252 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(761044..762252) Chlamydophila pneumoniae J138 919438 NP_300736.1 CDS ygo4 NC_002491.1 762290 763570 R phosphate permease complement(762290..763570) Chlamydophila pneumoniae J138 919439 NP_300737.1 CDS CPj0681 NC_002491.1 763577 764251 R hypothetical protein complement(763577..764251) Chlamydophila pneumoniae J138 919440 NP_300738.1 CDS dppD NC_002491.1 764306 765280 D peptide ABC transporter ATPase 764306..765280 Chlamydophila pneumoniae J138 919441 NP_300739.1 CDS dppF_2 NC_002491.1 765270 766244 D peptide ABC transporter ATPase 765270..766244 Chlamydophila pneumoniae J138 919442 NP_300740.1 CDS parB NC_002491.1 766500 767360 R chromosome partitioning protein complement(766500..767360) Chlamydophila pneumoniae J138 919443 NP_300741.1 CDS CPj0685 NC_002491.1 767390 767542 D hypothetical protein 767390..767542 Chlamydophila pneumoniae J138 919444 NP_300742.1 CDS CPj0686 NC_002491.1 767495 767683 R hypothetical protein complement(767495..767683) Chlamydophila pneumoniae J138 919445 NP_300743.1 CDS CPj0687 NC_002491.1 767886 768539 D hypothetical protein 767886..768539 Chlamydophila pneumoniae J138 919446 NP_300744.1 CDS CPj0688 NC_002491.1 768704 769462 D hypothetical protein 768704..769462 Chlamydophila pneumoniae J138 919447 NP_300745.1 CDS yfhO_1 NC_002491.1 769506 770726 R NifS-related aminotransferase complement(769506..770726) Chlamydophila pneumoniae J138 919449 NP_300746.1 CDS CPj0690 NC_002491.1 770755 772002 R ABC transporter membrane protein complement(770755..772002) Chlamydophila pneumoniae J138 919450 NP_300747.1 CDS abcX NC_002491.1 772004 772774 R ABC transporter ATPase complement(772004..772774) Chlamydophila pneumoniae J138 919451 NP_300748.1 CDS CPj0692 NC_002491.1 772780 774234 R with SufCD activates cysteine desulfurase SufS; cysteine desulfurase complement(772780..774234) Chlamydophila pneumoniae J138 919452 NP_300749.1 CDS CPj0693 NC_002491.1 774559 775578 R hypothetical protein complement(774559..775578) Chlamydophila pneumoniae J138 919456 NP_300750.1 CDS pbp2 NC_002491.1 775649 778921 R PBP2-transglycosylase/transpeptidase complement(775649..778921) Chlamydophila pneumoniae J138 919457 NP_300751.1 CDS ompA NC_002491.1 779537 780706 D major outer membrane protein 779537..780706 Chlamydophila pneumoniae J138 919458 NP_300752.1 CDS rpsB NC_002491.1 781090 781923 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 781090..781923 Chlamydophila pneumoniae J138 919462 NP_300753.1 CDS tsf NC_002491.1 781923 782771 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 781923..782771 Chlamydophila pneumoniae J138 919464 NP_300754.1 CDS pyrH NC_002491.1 782779 783525 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 782779..783525 Chlamydophila pneumoniae J138 919465 NP_300755.1 CDS frr NC_002491.1 783503 784045 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 783503..784045 Chlamydophila pneumoniae J138 919466 NP_300756.1 CDS CPj0700 NC_002491.1 784418 784933 D hypothetical protein 784418..784933 Chlamydophila pneumoniae J138 919461 NP_300757.1 CDS karG NC_002491.1 784920 785996 D ATP:guanido phosphotransferase 784920..785996 Chlamydophila pneumoniae J138 919468 NP_300758.1 CDS yscC NC_002491.1 786247 789006 R YopC/Gen secretion protein D complement(786247..789006) Chlamydophila pneumoniae J138 919471 NP_300759.1 CDS CPj0703 NC_002491.1 789003 790511 R S/T protein kinase complement(789003..790511) Chlamydophila pneumoniae J138 919474 NP_300760.1 CDS fliN NC_002491.1 790527 791642 R type III secretion system protein complement(790527..791642) Chlamydophila pneumoniae J138 919472 NP_300761.1 CDS CPj0705 NC_002491.1 791652 792494 R hypothetical protein complement(791652..792494) Chlamydophila pneumoniae J138 919467 NP_300762.1 CDS CPj0706 NC_002491.1 792498 793004 R hypothetical protein complement(792498..793004) Chlamydophila pneumoniae J138 919463 NP_300763.1 CDS yscN NC_002491.1 793022 794350 R flagellar-type ATPase; type III secretion system ATPase complement(793022..794350) Chlamydophila pneumoniae J138 919477 NP_300764.1 CDS CPj0708 NC_002491.1 794352 795026 R hypothetical protein complement(794352..795026) Chlamydophila pneumoniae J138 919478 NP_300765.1 CDS CPj0709 NC_002491.1 795060 795509 R hypothetical protein complement(795060..795509) Chlamydophila pneumoniae J138 919475 NP_300766.1 CDS CPj0710 NC_002491.1 795528 795782 R hypothetical protein complement(795528..795782) Chlamydophila pneumoniae J138 919473 NP_300767.1 CDS CPj0711 NC_002491.1 795804 796052 R hypothetical protein complement(795804..796052) Chlamydophila pneumoniae J138 919470 NP_300768.1 CDS CPj0712 NC_002491.1 796099 798636 R adenylate cyclase homolog; FHA domain-containing protein complement(796099..798636) Chlamydophila pneumoniae J138 919479 NP_300769.1 CDS CPj0713 NC_002491.1 798650 799042 R hypothetical protein complement(798650..799042) Chlamydophila pneumoniae J138 919484 NP_300770.1 CDS hemA NC_002491.1 799409 800428 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(799409..800428) Chlamydophila pneumoniae J138 919483 NP_300771.1 CDS gyrB_2 NC_002491.1 800978 802786 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 800978..802786 Chlamydophila pneumoniae J138 919482 NP_300772.1 CDS gyrA_2 NC_002491.1 802790 804226 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 802790..804226 Chlamydophila pneumoniae J138 919481 NP_300773.1 CDS CPj0717 NC_002491.1 804331 804630 D hypothetical protein 804331..804630 Chlamydophila pneumoniae J138 919480 NP_300774.1 CDS CPj0718 NC_002491.1 804630 804950 D hypothetical protein 804630..804950 Chlamydophila pneumoniae J138 918781 NP_300775.1 CDS sfhB NC_002491.1 805237 806214 D pseudouridine synthase 805237..806214 Chlamydophila pneumoniae J138 919485 NP_300776.1 CDS CPj0720 NC_002491.1 806324 806560 D hypothetical protein 806324..806560 Chlamydophila pneumoniae J138 919489 NP_300777.1 CDS kdsA NC_002491.1 807004 807813 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 807004..807813 Chlamydophila pneumoniae J138 919487 NP_300778.1 CDS CPj0722 NC_002491.1 807810 808298 D hypothetical protein 807810..808298 Chlamydophila pneumoniae J138 919486 NP_300779.1 CDS yhbG NC_002491.1 808305 809027 D ABC transporter ATPase 808305..809027 Chlamydophila pneumoniae J138 919493 NP_300780.1 CDS CPj0724 NC_002491.1 809024 809848 R hypothetical protein complement(809024..809848) Chlamydophila pneumoniae J138 919494 NP_300781.1 CDS CPj0725 NC_002491.1 809905 810132 R hypothetical protein complement(809905..810132) Chlamydophila pneumoniae J138 919496 NP_300782.1 CDS CPj0726 NC_002491.1 810198 812693 R hypothetical protein complement(810198..812693) Chlamydophila pneumoniae J138 919500 NP_300783.1 CDS CPj0727 NC_002491.1 812898 815516 D hypothetical protein 812898..815516 Chlamydophila pneumoniae J138 919501 NP_300784.1 CDS CPj0728 NC_002491.1 815843 817798 R hypothetical protein complement(815843..817798) Chlamydophila pneumoniae J138 919499 NP_300785.1 CDS CPj0729 NC_002491.1 817910 819178 R hypothetical protein complement(817910..819178) Chlamydophila pneumoniae J138 919498 NP_300786.1 CDS mviN NC_002491.1 819281 820924 R hypothetical protein complement(819281..820924) Chlamydophila pneumoniae J138 919497 NP_300787.1 CDS CPj0731 NC_002491.1 820908 821084 D hypothetical protein 820908..821084 Chlamydophila pneumoniae J138 919492 NP_300788.1 CDS nfo NC_002491.1 821419 822300 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 821419..822300 Chlamydophila pneumoniae J138 919495 NP_300789.1 CDS rpsD NC_002491.1 822419 823048 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(822419..823048) Chlamydophila pneumoniae J138 919503 NP_300790.1 CDS yceA NC_002491.1 823265 824239 D hypothetical protein 823265..824239 Chlamydophila pneumoniae J138 919505 NP_300791.1 CDS CPj0735 NC_002491.1 824321 824989 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(824321..824989) Chlamydophila pneumoniae J138 919506 NP_300792.1 CDS ygeD NC_002491.1 825310 827007 R efflux protein complement(825310..827007) Chlamydophila pneumoniae J138 919507 NP_300793.1 CDS recC NC_002491.1 827006 830080 D exodeoxyribonuclease V subunit gamma 827006..830080 Chlamydophila pneumoniae J138 919508 NP_300794.1 CDS recB NC_002491.1 830067 833219 D exodeoxyribonuclease V subunit beta 830067..833219 Chlamydophila pneumoniae J138 919511 NP_300795.1 CDS CPj0739 NC_002491.1 833179 834192 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(833179..834192) Chlamydophila pneumoniae J138 919512 NP_300796.1 CDS tyrB NC_002491.1 834182 835369 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(834182..835369) Chlamydophila pneumoniae J138 919513 NP_300797.1 CDS greA NC_002491.1 835503 837671 R contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation; transcript cleavage factor complement(835503..837671) Chlamydophila pneumoniae J138 919509 NP_300798.1 CDS CPj0742 NC_002491.1 837784 838212 D hypothetical protein 837784..838212 Chlamydophila pneumoniae J138 919504 NP_300799.1 CDS nqrA NC_002491.1 838283 839686 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 838283..839686 Chlamydophila pneumoniae J138 919502 NP_300800.1 CDS hemB NC_002491.1 839707 840705 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(839707..840705) Chlamydophila pneumoniae J138 919514 NP_300801.1 CDS CPj0745 NC_002491.1 841060 841224 R hypothetical protein complement(841060..841224) Chlamydophila pneumoniae J138 919516 NP_300802.1 CDS CPj0746 NC_002491.1 841296 842891 D hypothetical protein 841296..842891 Chlamydophila pneumoniae J138 919517 NP_300803.1 CDS CPj0747A NC_002491.1 843003 843188 D hypothetical protein 843003..843188 Chlamydophila pneumoniae J138 919518 NP_300804.1 CDS CPj0747B NC_002491.1 843127 843438 R hypothetical protein complement(843127..843438) Chlamydophila pneumoniae J138 919519 NP_300805.1 CDS ispA NC_002491.1 843439 844308 R geranyl transtransferase complement(843439..844308) Chlamydophila pneumoniae J138 919522 NP_300806.1 CDS glmU NC_002491.1 844324 844950 R UDP-GlcNAc pyrophosphorylase complement(844324..844950) Chlamydophila pneumoniae J138 919524 NP_300807.1 CDS tctD NC_002491.1 845025 845732 R probable; HTH DNA-binding domain-containing protein complement(845025..845732) Chlamydophila pneumoniae J138 919520 NP_300808.1 CDS CPj0751 NC_002491.1 845929 847758 D hypothetical protein 845929..847758 Chlamydophila pneumoniae J138 918776 NP_300809.1 CDS recD_2 NC_002491.1 847925 849406 D exodeoxyribonuclease V subunit alpha 847925..849406 Chlamydophila pneumoniae J138 919515 NP_300810.1 CDS CPj0753 NC_002491.1 849479 850327 R hypothetical protein complement(849479..850327) Chlamydophila pneumoniae J138 919523 NP_300811.1 CDS rpsT NC_002491.1 850358 850657 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(850358..850657) Chlamydophila pneumoniae J138 919525 NP_300812.1 CDS CPj0755 NC_002491.1 850918 852123 D hypothetical protein 850918..852123 Chlamydophila pneumoniae J138 919526 NP_300813.1 CDS rpoD NC_002491.1 852282 854000 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor 852282..854000 Chlamydophila pneumoniae J138 919527 NP_300814.1 CDS folX NC_002491.1 854054 854458 D dihydroneopterin aldolase 854054..854458 Chlamydophila pneumoniae J138 919528 NP_300815.1 CDS folP NC_002491.1 854431 855783 D dihydropteroate synthase 854431..855783 Chlamydophila pneumoniae J138 919529 NP_300816.1 CDS folA NC_002491.1 855809 856321 D dihydrofolate reductase 855809..856321 Chlamydophila pneumoniae J138 919530 NP_300817.1 CDS CPj0760 NC_002491.1 856278 857018 D hypothetical protein 856278..857018 Chlamydophila pneumoniae J138 919531 NP_300818.1 CDS CPj0761 NC_002491.1 857025 857699 D hypothetical protein 857025..857699 Chlamydophila pneumoniae J138 919532 NP_300819.1 CDS recA NC_002491.1 857857 858918 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(857857..858918) Chlamydophila pneumoniae J138 919533 NP_300820.1 CDS ygfA NC_002491.1 859290 859832 R formyltetrahydrofolate cycloligase complement(859290..859832) Chlamydophila pneumoniae J138 919535 NP_300821.1 CDS CPj0764 NC_002491.1 859842 861128 R hypothetical protein complement(859842..861128) Chlamydophila pneumoniae J138 919536 NP_300822.1 CDS CPj0765 NC_002491.1 861119 861703 R hypothetical protein complement(861119..861703) Chlamydophila pneumoniae J138 919537 NP_300823.1 CDS CPj0766 NC_002491.1 861712 863103 R hypothetical protein complement(861712..863103) Chlamydophila pneumoniae J138 919539 NP_300824.1 CDS CPj0767 NC_002491.1 863205 863501 D hypothetical protein 863205..863501 Chlamydophila pneumoniae J138 919534 NP_300825.1 CDS yohI NC_002491.1 863480 864487 D oxidoreductase 863480..864487 Chlamydophila pneumoniae J138 918778 NP_300826.1 CDS topA NC_002491.1 864439 867054 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I/SWI domain fusion protein complement(864439..867054) Chlamydophila pneumoniae J138 918777 NP_300827.1 CDS CPj0770 NC_002491.1 867661 868455 D hypothetical protein 867661..868455 Chlamydophila pneumoniae J138 919538 NP_300828.1 CDS rpoN NC_002491.1 868462 869784 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(868462..869784) Chlamydophila pneumoniae J138 919540 NP_300829.1 CDS uvrD NC_002491.1 869787 871706 R DNA helicase complement(869787..871706) Chlamydophila pneumoniae J138 919541 NP_300830.1 CDS ung NC_002491.1 871809 872519 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 871809..872519 Chlamydophila pneumoniae J138 919542 NP_300831.1 CDS CPj0774 NC_002491.1 872516 872749 D hypothetical protein 872516..872749 Chlamydophila pneumoniae J138 919543 NP_300832.1 CDS yggV NC_002491.1 872732 873352 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(872732..873352) Chlamydophila pneumoniae J138 919544 NP_300833.1 CDS CPj0776 NC_002491.1 873567 874811 D hypothetical protein 873567..874811 Chlamydophila pneumoniae J138 919545 NP_300834.1 CDS groEL NC_002491.1 874922 876502 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; molecular chaperone GroEL 874922..876502 Chlamydophila pneumoniae J138 919546 NP_300835.1 CDS ahpC NC_002491.1 876826 877416 D thio-specific antioxidant (TSA) peroxidase 876826..877416 Chlamydophila pneumoniae J138 919548 NP_300836.1 CDS CPj0779 NC_002491.1 877413 877802 R hypothetical protein complement(877413..877802) Chlamydophila pneumoniae J138 919549 NP_300837.1 CDS amiB NC_002491.1 877909 878526 R N-acetylmuramoyl-L-Ala amidase complement(877909..878526) Chlamydophila pneumoniae J138 919550 NP_300838.1 CDS pal NC_002491.1 878516 879094 R peptidoglycan-associated lipoprotein complement(878516..879094) Chlamydophila pneumoniae J138 919552 NP_300839.1 CDS tolB NC_002491.1 879091 880386 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(879091..880386) Chlamydophila pneumoniae J138 919553 NP_300840.1 CDS CPj0783 NC_002491.1 880418 881206 R hypothetical protein complement(880418..881206) Chlamydophila pneumoniae J138 919554 NP_300841.1 CDS exbD NC_002491.1 881210 881617 R biopolymer transport protein complement(881210..881617) Chlamydophila pneumoniae J138 919555 NP_300842.1 CDS exbB NC_002491.1 881614 882312 R macromolecule transporter complement(881614..882312) Chlamydophila pneumoniae J138 919556 NP_300843.1 CDS dsbD NC_002491.1 882506 884617 D thio:disulfide interchange protein 882506..884617 Chlamydophila pneumoniae J138 918783 NP_300844.1 CDS yabD NC_002491.1 884940 885725 D hydrolase 884940..885725 Chlamydophila pneumoniae J138 918782 NP_300845.1 CDS sdhC NC_002491.1 885863 886756 D succinate dehydrogenase 885863..886756 Chlamydophila pneumoniae J138 918780 NP_300846.1 CDS sdhA NC_002491.1 886760 888640 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 886760..888640 Chlamydophila pneumoniae J138 918779 NP_300847.1 CDS sdhB NC_002491.1 888651 889427 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 888651..889427 Chlamydophila pneumoniae J138 919551 NP_300848.1 CDS CPj0791 NC_002491.1 889429 892371 R hypothetical protein complement(889429..892371) Chlamydophila pneumoniae J138 919557 NP_300849.1 CDS CPj0792 NC_002491.1 892426 894240 R hypothetical protein complement(892426..894240) Chlamydophila pneumoniae J138 919558 NP_300850.1 CDS rbsU NC_002491.1 894237 896144 R RsbW antagonist; sigma regulatory family protein - PP2C phosphatase complement(894237..896144) Chlamydophila pneumoniae J138 919560 NP_300851.1 CDS CPj0794 NC_002491.1 896495 897328 D hypothetical protein 896495..897328 Chlamydophila pneumoniae J138 919561 NP_300852.1 CDS CPj0795 NC_002491.1 897449 898519 D hypothetical protein 897449..898519 Chlamydophila pneumoniae J138 919562 NP_300853.1 CDS CPj0796 NC_002491.1 898622 900664 D hypothetical protein 898622..900664 Chlamydophila pneumoniae J138 919564 NP_300854.1 CDS CPj0797 NC_002491.1 900921 902018 D hypothetical protein 900921..902018 Chlamydophila pneumoniae J138 919565 NP_300855.1 CDS CPj0798 NC_002491.1 902167 903180 D hypothetical protein 902167..903180 Chlamydophila pneumoniae J138 919567 NP_300856.1 CDS CPj0799 NC_002491.1 903258 904307 R hypothetical protein complement(903258..904307) Chlamydophila pneumoniae J138 919566 NP_300857.1 CDS eno NC_002491.1 904567 905853 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(904567..905853) Chlamydophila pneumoniae J138 919579 NP_300858.1 CDS uvrB NC_002491.1 906045 908018 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(906045..908018) Chlamydophila pneumoniae J138 919563 NP_300859.1 CDS trpS NC_002491.1 908027 909061 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(908027..909061) Chlamydophila pneumoniae J138 919559 NP_300860.1 CDS CPj0803 NC_002491.1 909070 909624 R hypothetical protein complement(909070..909624) Chlamydophila pneumoniae J138 919568 NP_300861.1 CDS gp6D NC_002491.1 909628 910380 R hypothetical protein complement(909628..910380) Chlamydophila pneumoniae J138 919569 NP_300862.1 CDS minD NC_002491.1 910385 911152 R chromosome partitioning ATPase complement(910385..911152) Chlamydophila pneumoniae J138 919572 NP_300863.1 CDS thrS NC_002491.1 911185 913092 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(911185..913092) Chlamydophila pneumoniae J138 919573 NP_300864.1 CDS CPj0807 NC_002491.1 913292 914203 D hypothetical protein 913292..914203 Chlamydophila pneumoniae J138 919575 NP_300865.1 CDS CPj0808 NC_002491.1 914274 915608 R hypothetical protein complement(914274..915608) Chlamydophila pneumoniae J138 919577 NP_300866.1 CDS CPj0809 NC_002491.1 915641 917107 R hypothetical protein complement(915641..917107) Chlamydophila pneumoniae J138 919581 NP_300867.1 CDS CPj0810 NC_002491.1 917144 917506 R hypothetical protein complement(917144..917506) Chlamydophila pneumoniae J138 919582 NP_300868.1 CDS lcrH_1 NC_002491.1 917527 918222 R low calcium response protein H complement(917527..918222) Chlamydophila pneumoniae J138 919583 NP_300869.1 CDS mutL NC_002491.1 918445 920187 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 918445..920187 Chlamydophila pneumoniae J138 919584 NP_300870.1 CDS pepP NC_002491.1 920192 921259 D aminopeptidase 920192..921259 Chlamydophila pneumoniae J138 919580 NP_300871.1 CDS CPj0814 NC_002491.1 921429 922682 D hypothetical protein 921429..922682 Chlamydophila pneumoniae J138 919578 NP_300872.1 CDS gspD NC_002491.1 922683 924947 D general secretion protein D 922683..924947 Chlamydophila pneumoniae J138 919576 NP_300873.1 CDS gspE NC_002491.1 924937 926427 D general secretion protein E 924937..926427 Chlamydophila pneumoniae J138 919574 NP_300874.1 CDS gspF NC_002491.1 926437 927612 D general secretion protein F 926437..927612 Chlamydophila pneumoniae J138 919571 NP_300875.1 CDS CPj0818 NC_002491.1 927636 928007 D leader peptide; hypothetical protein 927636..928007 Chlamydophila pneumoniae J138 919570 NP_300876.1 CDS CPj0819 NC_002491.1 928011 928457 D hypothetical protein 928011..928457 Chlamydophila pneumoniae J138 919586 NP_300877.1 CDS CPj0820 NC_002491.1 928442 928849 D hypothetical protein 928442..928849 Chlamydophila pneumoniae J138 919589 NP_300878.1 CDS CPj0821 NC_002491.1 928988 929992 D hypothetical protein 928988..929992 Chlamydophila pneumoniae J138 919591 NP_300879.1 CDS CPj0822 NC_002491.1 930077 930553 D hypothetical protein 930077..930553 Chlamydophila pneumoniae J138 919592 NP_300880.1 CDS yscT NC_002491.1 930819 931688 R YopT tranlocation T complement(930819..931688) Chlamydophila pneumoniae J138 919590 NP_300881.1 CDS yscS NC_002491.1 931696 931983 R YopS translocation protein complement(931696..931983) Chlamydophila pneumoniae J138 919588 NP_300882.1 CDS yscR NC_002491.1 931995 932915 R type III secretion system protein complement(931995..932915) Chlamydophila pneumoniae J138 919587 NP_300883.1 CDS yscL NC_002491.1 932930 933631 R type III secretion system protein complement(932930..933631) Chlamydophila pneumoniae J138 919585 NP_300884.1 CDS CPj0827 NC_002491.1 933752 934585 R hypothetical protein complement(933752..934585) Chlamydophila pneumoniae J138 919593 NP_300885.1 CDS yscJ NC_002491.1 934585 935592 R Yop translocation J complement(934585..935592) Chlamydophila pneumoniae J138 919594 NP_300886.1 CDS CPj0829 NC_002491.1 936065 936622 D hypothetical protein 936065..936622 Chlamydophila pneumoniae J138 919595 NP_300887.1 CDS CPj0830 NC_002491.1 936765 937283 D hypothetical protein 936765..937283 Chlamydophila pneumoniae J138 919596 NP_300888.1 CDS CPj0831 NC_002491.1 937588 937758 D hypothetical protein 937588..937758 Chlamydophila pneumoniae J138 919597 NP_300889.1 CDS lipA NC_002491.1 938145 939068 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(938145..939068) Chlamydophila pneumoniae J138 919598 NP_300890.1 CDS lpdA NC_002491.1 939065 940450 R E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(939065..940450) Chlamydophila pneumoniae J138 919599 NP_300891.1 CDS CPj0834 NC_002491.1 940874 941338 D hypothetical protein 940874..941338 Chlamydophila pneumoniae J138 919455 NP_300892.1 CDS CPj0835 NC_002491.1 941363 945010 R SWI/SNF family helicase_1 complement(941363..945010) Chlamydophila pneumoniae J138 919454 NP_300893.1 CDS brnQ NC_002491.1 945040 946200 R branched-chain amino acid ABC transporter complement(945040..946200) Chlamydophila pneumoniae J138 919448 NP_300894.1 CDS nth NC_002491.1 946463 947092 R endonuclease III complement(946463..947092) Chlamydophila pneumoniae J138 919453 NP_300895.1 CDS trmE NC_002491.1 947099 948427 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(947099..948427) Chlamydophila pneumoniae J138 919600 NP_300896.1 CDS psdD NC_002491.1 948578 949483 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 948578..949483 Chlamydophila pneumoniae J138 919601 NP_300897.1 CDS CPj0840 NC_002491.1 949543 950868 D hypothetical protein 949543..950868 Chlamydophila pneumoniae J138 919602 NP_300898.1 CDS secA NC_002491.1 951052 953964 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 951052..953964 Chlamydophila pneumoniae J138 919603 NP_300899.1 CDS CPj0842 NC_002491.1 954028 954204 R frame-shift with CPj0843; hypothetical protein complement(954028..954204) Chlamydophila pneumoniae J138 919604 NP_300900.1 CDS CPj0843 NC_002491.1 954312 954512 R hypothetical protein complement(954312..954512) Chlamydophila pneumoniae J138 919605 NP_300901.1 CDS engA NC_002491.1 954588 956051 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(954588..956051) Chlamydophila pneumoniae J138 919606 NP_300902.1 CDS pcnB_1 NC_002491.1 956168 957400 R poly A polymerase complement(956168..957400) Chlamydophila pneumoniae J138 919607 NP_300903.1 CDS clpX NC_002491.1 957430 958695 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(957430..958695) Chlamydophila pneumoniae J138 919608 NP_300904.1 CDS clpP NC_002491.1 958705 959316 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(958705..959316) Chlamydophila pneumoniae J138 919609 NP_300905.1 CDS tig NC_002491.1 959495 960823 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(959495..960823) Chlamydophila pneumoniae J138 919610 NP_300906.1 CDS CPj0849 NC_002491.1 961109 964609 D SWI/SNF family helicase_2 961109..964609 Chlamydophila pneumoniae J138 919612 NP_300907.1 CDS mreB NC_002491.1 964614 965714 D rod shape-determining protein MreB 964614..965714 Chlamydophila pneumoniae J138 919613 NP_300908.1 CDS pckA NC_002491.1 965717 967519 D catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 965717..967519 Chlamydophila pneumoniae J138 919614 NP_300909.1 CDS CPj0852 NC_002491.1 967637 969937 D hypothetical protein 967637..969937 Chlamydophila pneumoniae J138 919615 NP_300910.1 CDS CPj0853 NC_002491.1 969958 971127 D hypothetical protein 969958..971127 Chlamydophila pneumoniae J138 919616 NP_300911.1 CDS ompB NC_002491.1 971124 972158 R hypothetical protein complement(971124..972158) Chlamydophila pneumoniae J138 919617 NP_300912.1 CDS gpsA NC_002491.1 972312 973316 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(972312..973316) Chlamydophila pneumoniae J138 919618 NP_300913.1 CDS CPj0856 NC_002491.1 973313 974698 R UDP-glucose pyrophosphorylase complement(973313..974698) Chlamydophila pneumoniae J138 919619 NP_300914.1 CDS CPj0857 NC_002491.1 974710 975078 R hypothetical protein complement(974710..975078) Chlamydophila pneumoniae J138 919620 NP_300915.1 CDS fliI NC_002491.1 975075 976376 R involved in type III protein export; type III secretion system ATPase complement(975075..976376) Chlamydophila pneumoniae J138 919621 NP_300916.1 CDS CPj0859 NC_002491.1 976373 976909 R hypothetical protein complement(976373..976909) Chlamydophila pneumoniae J138 919622 NP_300917.1 CDS fliF NC_002491.1 976926 977951 R type III secretion system protein complement(976926..977951) Chlamydophila pneumoniae J138 919623 NP_300918.1 CDS CPj0861 NC_002491.1 978243 979043 R NifU-like protein complement(978243..979043) Chlamydophila pneumoniae J138 919624 NP_300919.1 CDS yfhO_2 NC_002491.1 979040 980194 R NifS-related aminotransferase complement(979040..980194) Chlamydophila pneumoniae J138 919625 NP_300920.1 CDS pgmA NC_002491.1 980149 980835 R catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(980149..980835) Chlamydophila pneumoniae J138 919626 NP_300921.1 CDS yjbC NC_002491.1 980991 981698 D pseudouridine synthase 980991..981698 Chlamydophila pneumoniae J138 919627 NP_300922.1 CDS CPj0865 NC_002491.1 981739 982266 D hypothetical protein 981739..982266 Chlamydophila pneumoniae J138 919628 NP_300923.1 CDS birA NC_002491.1 982234 982812 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase complement(982234..982812) Chlamydophila pneumoniae J138 919629 NP_300924.1 CDS rodA NC_002491.1 982744 983991 D rod shape protein 982744..983991 Chlamydophila pneumoniae J138 919630 NP_300925.1 CDS zntA NC_002491.1 983988 985964 R metal transport P-type ATPase complement(983988..985964) Chlamydophila pneumoniae J138 919631 NP_300926.1 CDS CPj0869 NC_002491.1 985976 986722 R hypothetical protein complement(985976..986722) Chlamydophila pneumoniae J138 919632 NP_300927.1 CDS serS NC_002491.1 986766 988049 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(986766..988049) Chlamydophila pneumoniae J138 919633 NP_300928.1 CDS ribD NC_002491.1 988093 989223 D riboflavin deaminase 988093..989223 Chlamydophila pneumoniae J138 919634 NP_300929.1 CDS ribA_ribB NC_002491.1 989284 990540 D bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 989284..990540 Chlamydophila pneumoniae J138 919635 NP_300930.1 CDS ribH NC_002491.1 990554 991018 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 990554..991018 Chlamydophila pneumoniae J138 919636 NP_300931.1 CDS CPj0874 NC_002491.1 991067 992428 R hypothetical protein complement(991067..992428) Chlamydophila pneumoniae J138 919637 NP_300932.1 CDS CPj0875 NC_002491.1 992693 993346 D hypothetical protein 992693..993346 Chlamydophila pneumoniae J138 919638 NP_300933.1 CDS dagA_2 NC_002491.1 993465 994841 D D-alanine/glycine permease 993465..994841 Chlamydophila pneumoniae J138 919639 NP_300934.1 CDS ybcL NC_002491.1 994854 995306 D hypothetical protein 994854..995306 Chlamydophila pneumoniae J138 919640 NP_300935.1 CDS CPj0878 NC_002491.1 995310 995975 R SET domain-containing protein complement(995310..995975) Chlamydophila pneumoniae J138 919641 NP_300936.1 CDS yycJ NC_002491.1 995963 996760 R metal dependent hydrolase complement(995963..996760) Chlamydophila pneumoniae J138 919642 NP_300937.1 CDS ftsK NC_002491.1 996762 999182 R DNA translocase FtsK complement(996762..999182) Chlamydophila pneumoniae J138 919643 NP_300938.1 CDS CPj0881 NC_002491.1 1004988 1005533 D hypothetical protein 1004988..1005533 Chlamydophila pneumoniae J138 919645 NP_300939.1 CDS CPj0882 NC_002491.1 1005589 1006728 D hypothetical protein 1005589..1006728 Chlamydophila pneumoniae J138 919646 NP_300940.1 CDS nqr6 NC_002491.1 1006891 1008186 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(1006891..1008186) Chlamydophila pneumoniae J138 919647 NP_300941.1 CDS yajC NC_002491.1 1008327 1008680 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(1008327..1008680) Chlamydophila pneumoniae J138 919648 NP_300942.1 CDS ygcA NC_002491.1 1008751 1009956 R rRNA methyltransferse complement(1008751..1009956) Chlamydophila pneumoniae J138 919649 NP_300943.1 CDS hctA NC_002491.1 1010226 1010597 R histone-like developmental protein complement(1010226..1010597) Chlamydophila pneumoniae J138 919650 NP_300944.1 CDS CPj0887 NC_002491.1 1011013 1013481 D hypothetical protein 1011013..1013481 Chlamydophila pneumoniae J138 919651 NP_300945.1 CDS hemG NC_002491.1 1013437 1014744 R catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase complement(1013437..1014744) Chlamydophila pneumoniae J138 919652 NP_300946.1 CDS hemN_2 NC_002491.1 1014780 1016156 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1014780..1016156) Chlamydophila pneumoniae J138 919653 NP_300947.1 CDS hemE NC_002491.1 1016137 1017126 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1016137..1017126) Chlamydophila pneumoniae J138 919654 NP_300948.1 CDS mfd NC_002491.1 1017137 1020394 R transcription-repair coupling factor complement(1017137..1020394) Chlamydophila pneumoniae J138 919655 NP_300949.1 CDS alaS NC_002491.1 1020364 1022982 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1020364..1022982) Chlamydophila pneumoniae J138 919656 NP_300950.1 CDS tktB_1 NC_002491.1 1023215 1025212 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1023215..1025212 Chlamydophila pneumoniae J138 919657 NP_300951.1 CDS amn NC_002491.1 1025206 1026087 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(1025206..1026087) Chlamydophila pneumoniae J138 919658 NP_300952.1 CDS efp_2 NC_002491.1 1026309 1026881 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1026309..1026881 Chlamydophila pneumoniae J138 919659 NP_300953.1 CDS CPj0896 NC_002491.1 1026916 1027146 D hypothetical protein 1026916..1027146 Chlamydophila pneumoniae J138 919660 NP_300954.1 CDS CPj0897 NC_002491.1 1027171 1028058 R phosphohydrolase complement(1027171..1028058) Chlamydophila pneumoniae J138 919661 NP_300955.1 CDS groEL_3 NC_002491.1 1028222 1029781 R heat shock protein-60 complement(1028222..1029781) Chlamydophila pneumoniae J138 919662 NP_300956.1 CDS murF NC_002491.1 1030196 1031539 D muramoyl-DAP ligase 1030196..1031539 Chlamydophila pneumoniae J138 919664 NP_300957.1 CDS mraY NC_002491.1 1031556 1032605 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1031556..1032605 Chlamydophila pneumoniae J138 919665 NP_300958.1 CDS murD NC_002491.1 1032608 1033861 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1032608..1033861 Chlamydophila pneumoniae J138 919666 NP_300959.1 CDS nlpD NC_002491.1 1033864 1034565 D invasin repeat family; muramidase 1033864..1034565 Chlamydophila pneumoniae J138 919667 NP_300960.1 CDS ftsW NC_002491.1 1034584 1035741 D cell division protein ftsW 1034584..1035741 Chlamydophila pneumoniae J138 919668 NP_300961.1 CDS murG NC_002491.1 1035647 1036720 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1035647..1036720 Chlamydophila pneumoniae J138 919669 NP_300962.1 CDS murC_ddlA NC_002491.1 1036730 1039159 D catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine and catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase 1036730..1039159 Chlamydophila pneumoniae J138 919670 NP_300963.1 CDS CPj0906 NC_002491.1 1039233 1039661 R hypothetical protein complement(1039233..1039661) Chlamydophila pneumoniae J138 919671 NP_300964.1 CDS cutA NC_002491.1 1039763 1040101 R divalent cation tolerance protein complement(1039763..1040101) Chlamydophila pneumoniae J138 919672 NP_300965.1 CDS CPj0908 NC_002491.1 1040098 1040910 R hypothetical protein complement(1040098..1040910) Chlamydophila pneumoniae J138 919673 NP_300966.1 CDS rsbV_2 NC_002491.1 1040958 1041290 D sigma regulatory factor 1040958..1041290 Chlamydophila pneumoniae J138 919674 NP_300967.1 CDS miaA NC_002491.1 1041300 1042328 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1041300..1042328 Chlamydophila pneumoniae J138 919675 NP_300968.1 CDS CPj0911 NC_002491.1 1042303 1043364 R hypothetical protein complement(1042303..1043364) Chlamydophila pneumoniae J138 919676 NP_300969.1 CDS CPj0912 NC_002491.1 1043450 1045111 D hypothetical protein 1043450..1045111 Chlamydophila pneumoniae J138 919677 NP_300970.1 CDS CPj0913 NC_002491.1 1045108 1045296 D hypothetical protein 1045108..1045296 Chlamydophila pneumoniae J138 919678 NP_300971.1 CDS CPj0914 NC_002491.1 1045347 1045748 D hypothetical protein 1045347..1045748 Chlamydophila pneumoniae J138 919679 NP_300972.1 CDS ybeB NC_002491.1 1045809 1046168 D iojap superfamily protein 1045809..1046168 Chlamydophila pneumoniae J138 919680 NP_300973.1 CDS fabF NC_002491.1 1046185 1047435 D FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase 1046185..1047435 Chlamydophila pneumoniae J138 919681 NP_300974.1 CDS CPj0917 NC_002491.1 1047438 1047890 D hydrolase/phosphatase-like protein 1047438..1047890 Chlamydophila pneumoniae J138 919682 NP_300975.1 CDS ppa NC_002491.1 1047924 1048571 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(1047924..1048571) Chlamydophila pneumoniae J138 919683 NP_300976.1 CDS ldh NC_002491.1 1048726 1049781 D leucine dehydrogenase 1048726..1049781 Chlamydophila pneumoniae J138 919684 NP_300977.1 CDS cysQ NC_002491.1 1049776 1050753 R sulfite synthesis/biphosphate phosphatase complement(1049776..1050753) Chlamydophila pneumoniae J138 919685 NP_300978.1 CDS CPj0921 NC_002491.1 1050883 1051644 D snglycerol-3-P acyltransferase 1050883..1051644 Chlamydophila pneumoniae J138 919686 NP_300979.1 CDS aas NC_002491.1 1051662 1053278 D Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; long chain fatty acid--ACP ligase 1051662..1053278 Chlamydophila pneumoniae J138 919687 NP_300980.1 CDS bioF_1 NC_002491.1 1053332 1054444 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 1053332..1054444 Chlamydophila pneumoniae J138 919843 NP_300981.1 CDS priA NC_002491.1 1054373 1056622 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(1054373..1056622) Chlamydophila pneumoniae J138 919842 NP_300982.1 CDS CPj0925 NC_002491.1 1056571 1057248 R hypothetical protein complement(1056571..1057248) Chlamydophila pneumoniae J138 919841 NP_300983.1 CDS CPj0926 NC_002491.1 1057408 1057908 D thioredoxin 1057408..1057908 Chlamydophila pneumoniae J138 919688 NP_300984.1 CDS CPj0927 NC_002491.1 1058015 1059157 R hypothetical protein complement(1058015..1059157) Chlamydophila pneumoniae J138 919689 NP_300985.1 CDS CPj0928 NC_002491.1 1059229 1060356 R hypothetical protein complement(1059229..1060356) Chlamydophila pneumoniae J138 919690 NP_300986.1 CDS CPj0929 NC_002491.1 1060531 1061640 R hypothetical protein complement(1060531..1061640) Chlamydophila pneumoniae J138 919691 NP_300987.1 CDS CPj0930 NC_002491.1 1062206 1062682 D hypothetical protein 1062206..1062682 Chlamydophila pneumoniae J138 919692 NP_300988.1 CDS lysS NC_002491.1 1063487 1065070 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1063487..1065070 Chlamydophila pneumoniae J138 919693 NP_300989.1 CDS cysS NC_002491.1 1065067 1066491 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(1065067..1066491) Chlamydophila pneumoniae J138 919694 NP_300990.1 CDS CPj0933 NC_002491.1 1066884 1067930 D disulfide bond isomerase 1066884..1067930 Chlamydophila pneumoniae J138 919695 NP_300991.1 CDS rnpA NC_002491.1 1067872 1068291 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(1067872..1068291) Chlamydophila pneumoniae J138 919696 NP_300992.1 CDS rpmH NC_002491.1 1068303 1068440 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(1068303..1068440) Chlamydophila pneumoniae J138 919697 NP_300993.1 CDS rpmJ NC_002491.1 1068685 1068822 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 1068685..1068822 Chlamydophila pneumoniae J138 919698 NP_300994.1 CDS rpsN NC_002491.1 1068845 1069150 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 1068845..1069150 Chlamydophila pneumoniae J138 919699 NP_300995.1 CDS CPj0938 NC_002491.1 1069195 1069671 R leader peptide-periplasmic; hypothetical protein complement(1069195..1069671) Chlamydophila pneumoniae J138 919700 NP_300996.1 CDS CPj0939 NC_002491.1 1070077 1070547 D hypothetical protein 1070077..1070547 Chlamydophila pneumoniae J138 919701 NP_300997.1 CDS uvrC NC_002491.1 1070550 1072361 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(1070550..1072361) Chlamydophila pneumoniae J138 919702 NP_300998.1 CDS mutS NC_002491.1 1072364 1074850 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1072364..1074850) Chlamydophila pneumoniae J138 919703 NP_300999.1 CDS dnaG NC_002491.1 1075334 1077106 D synthesizes RNA primers at the replication forks; DNA primase 1075334..1077106 Chlamydophila pneumoniae J138 919704 NP_301000.1 CDS CPj0943 NC_002491.1 1077327 1077590 D hypothetical protein 1077327..1077590 Chlamydophila pneumoniae J138 919705 NP_301001.1 CDS CPj0944 NC_002491.1 1077861 1078349 D hypothetical protein 1077861..1078349 Chlamydophila pneumoniae J138 919706 NP_301002.1 CDS CPj0945 NC_002491.1 1078419 1079012 D hypothetical protein 1078419..1079012 Chlamydophila pneumoniae J138 919707 NP_301003.1 CDS glyQ NC_002491.1 1079091 1082135 R glycyl tRNA synthetase complement(1079091..1082135) Chlamydophila pneumoniae J138 919708 NP_301004.1 CDS pgsA_2 NC_002491.1 1082791 1083411 D glycerol-3-P phosphatydyltransferase 1082791..1083411 Chlamydophila pneumoniae J138 919709 NP_301005.1 CDS glgA NC_002491.1 1083393 1084823 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(1083393..1084823) Chlamydophila pneumoniae J138 919710 NP_301006.1 CDS ctc NC_002491.1 1085278 1085835 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1085278..1085835 Chlamydophila pneumoniae J138 919714 NP_301007.1 CDS pth NC_002491.1 1085837 1086379 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1085837..1086379 Chlamydophila pneumoniae J138 919713 NP_301008.1 CDS rpsF NC_002491.1 1086471 1086809 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1086471..1086809 Chlamydophila pneumoniae J138 919712 NP_301009.1 CDS rpsR NC_002491.1 1086827 1087075 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1086827..1087075 Chlamydophila pneumoniae J138 919053 NP_301010.1 CDS rplI NC_002491.1 1087091 1087600 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1087091..1087600 Chlamydophila pneumoniae J138 919715 NP_301011.1 CDS CPj0954 NC_002491.1 1087635 1088060 D catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1087635..1088060 Chlamydophila pneumoniae J138 919718 NP_301012.1 CDS CPj0955 NC_002491.1 1087994 1088527 D hypothetical protein 1087994..1088527 Chlamydophila pneumoniae J138 919720 NP_301013.1 CDS CPj0956 NC_002491.1 1088909 1090261 D hypothetical protein 1088909..1090261 Chlamydophila pneumoniae J138 919719 NP_301014.1 CDS ide NC_002491.1 1090309 1093137 R insulinase/protease III complement(1090309..1093137) Chlamydophila pneumoniae J138 919717 NP_301015.1 CDS plsB NC_002491.1 1093139 1094134 R glycerol-3-P acyltransferase complement(1093139..1094134) Chlamydophila pneumoniae J138 919716 NP_301016.1 CDS cafE NC_002491.1 1094145 1095692 R axial filament protein complement(1094145..1095692) Chlamydophila pneumoniae J138 919724 NP_301017.1 CDS CPj0960 NC_002491.1 1096113 1096454 D hypothetical protein 1096113..1096454 Chlamydophila pneumoniae J138 919723 NP_301018.1 CDS rpmF NC_002491.1 1096467 1096649 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1096467..1096649 Chlamydophila pneumoniae J138 919722 NP_301019.1 CDS plsX NC_002491.1 1096665 1097627 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1096665..1097627 Chlamydophila pneumoniae J138 919721 NP_301020.1 CDS pmp_21 NC_002491.1 1097747 1102576 D hypothetical protein 1097747..1102576 Chlamydophila pneumoniae J138 919728 NP_301021.1 CDS CPj0964 NC_002491.1 1102647 1104107 R hypothetical protein complement(1102647..1104107) Chlamydophila pneumoniae J138 919727 NP_301022.1 CDS lpxB NC_002491.1 1104271 1106085 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate; lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(1104271..1106085) Chlamydophila pneumoniae J138 919726 NP_301023.1 CDS pcnB_2 NC_002491.1 1106094 1107386 R poly A polymerase complement(1106094..1107386) Chlamydophila pneumoniae J138 919733 NP_301024.1 CDS glmM NC_002491.1 1107861 1109237 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1107861..1109237 Chlamydophila pneumoniae J138 919732 NP_301025.1 CDS glmS NC_002491.1 1109244 1111073 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1109244..1111073 Chlamydophila pneumoniae J138 919731 NP_301026.1 CDS tyrP_1 NC_002491.1 1111161 1112351 D tyrosine transport 1111161..1112351 Chlamydophila pneumoniae J138 919730 NP_301027.1 CDS yccA_2 NC_002491.1 1112402 1113118 D transport permease 1112402..1113118 Chlamydophila pneumoniae J138 919737 NP_301028.1 CDS ftsY NC_002491.1 1113127 1113999 R cell division protein ftsY complement(1113127..1113999) Chlamydophila pneumoniae J138 919735 NP_301029.1 CDS sucC NC_002491.1 1114070 1115230 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1114070..1115230 Chlamydophila pneumoniae J138 919739 NP_301030.1 CDS sucD NC_002491.1 1115244 1116125 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 1115244..1116125 Chlamydophila pneumoniae J138 919738 NP_301031.1 CDS CPj0975 NC_002491.1 1116804 1117340 D hypothetical protein 1116804..1117340 Chlamydophila pneumoniae J138 919734 NP_301032.1 CDS CPj0976 NC_002491.1 1117784 1118890 D hypothetical protein 1117784..1118890 Chlamydophila pneumoniae J138 919736 NP_301033.1 CDS CPj0977 NC_002491.1 1119073 1120107 D hypothetical protein 1119073..1120107 Chlamydophila pneumoniae J138 919741 NP_301034.1 CDS htrA NC_002491.1 1120385 1121851 D DO serine protease 1120385..1121851 Chlamydophila pneumoniae J138 919746 NP_301035.1 CDS CPj0980 NC_002491.1 1121906 1123387 R hypothetical protein complement(1121906..1123387) Chlamydophila pneumoniae J138 919745 NP_301036.1 CDS CPj0981 NC_002491.1 1123436 1126360 D insulinase; zinc metalloprotease 1123436..1126360 Chlamydophila pneumoniae J138 919744 NP_301037.1 CDS yigN NC_002491.1 1126364 1127599 R hypothetical protein complement(1126364..1127599) Chlamydophila pneumoniae J138 919742 NP_301038.1 CDS pssA NC_002491.1 1127608 1128405 R glycerol-serine phosphatidyltransferase complement(1127608..1128405) Chlamydophila pneumoniae J138 919743 NP_301039.1 CDS nrdA NC_002491.1 1128784 1131918 D catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1128784..1131918 Chlamydophila pneumoniae J138 919750 NP_301040.1 CDS nrdB NC_002491.1 1131939 1132979 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 1131939..1132979 Chlamydophila pneumoniae J138 919749 NP_301041.1 CDS trmB NC_002491.1 1133129 1133803 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1133129..1133803 Chlamydophila pneumoniae J138 919748 NP_301042.1 CDS ytgB_2 NC_002491.1 1133921 1134523 D rRNA methylase 1133921..1134523 Chlamydophila pneumoniae J138 919754 NP_301043.1 CDS murB NC_002491.1 1134477 1135391 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(1134477..1135391) Chlamydophila pneumoniae J138 919755 NP_301044.1 CDS nusB NC_002491.1 1135418 1135900 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(1135418..1135900) Chlamydophila pneumoniae J138 919757 NP_301045.1 CDS infC NC_002491.1 1136289 1136849 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1136289..1136849 Chlamydophila pneumoniae J138 919758 NP_301046.1 CDS rpmI NC_002491.1 1136827 1137021 D 50S ribosomal protein L35 1136827..1137021 Chlamydophila pneumoniae J138 919759 NP_301047.1 CDS rplT NC_002491.1 1137040 1137405 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1137040..1137405 Chlamydophila pneumoniae J138 919760 NP_301048.1 CDS pheS NC_002491.1 1137420 1138439 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1137420..1138439 Chlamydophila pneumoniae J138 919761 NP_301049.1 CDS CPj0994 NC_002491.1 1138804 1140849 D hypothetical protein 1138804..1140849 Chlamydophila pneumoniae J138 919763 NP_301050.1 CDS CPj0995 NC_002491.1 1140818 1141918 R hypothetical protein complement(1140818..1141918) Chlamydophila pneumoniae J138 919764 NP_301051.1 CDS CPj0996 NC_002491.1 1141922 1142995 R hypothetical protein complement(1141922..1142995) Chlamydophila pneumoniae J138 919765 NP_301052.1 CDS mesJ NC_002491.1 1143114 1144073 D PP-loop superfamily ATPase 1143114..1144073 Chlamydophila pneumoniae J138 919766 NP_301053.1 CDS ftsH NC_002491.1 1144261 1146993 D ATP-dependent zinc protease 1144261..1146993 Chlamydophila pneumoniae J138 919767 NP_301054.1 CDS pnp NC_002491.1 1147169 1149253 R polynucleotide phosphorylase complement(1147169..1149253) Chlamydophila pneumoniae J138 919768 NP_301055.1 CDS rpsO NC_002491.1 1149294 1149563 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(1149294..1149563) Chlamydophila pneumoniae J138 919769 NP_301056.1 CDS yfhC NC_002491.1 1149832 1150278 D cytosine deaminase 1149832..1150278 Chlamydophila pneumoniae J138 919770 NP_301057.1 CDS CPj1002 NC_002491.1 1150268 1150498 D hypothetical protein 1150268..1150498 Chlamydophila pneumoniae J138 919771 NP_301058.1 CDS CPj1003 NC_002491.1 1150495 1151202 R hypothetical protein complement(1150495..1151202) Chlamydophila pneumoniae J138 919772 NP_301059.1 CDS CPj1004 NC_002491.1 1151282 1151803 R hypothetical protein complement(1151282..1151803) Chlamydophila pneumoniae J138 919773 NP_301060.1 CDS CPj1005 NC_002491.1 1151818 1152339 R hypothetical protein complement(1151818..1152339) Chlamydophila pneumoniae J138 919774 NP_301061.1 CDS CPj1006 NC_002491.1 1152393 1152878 R hypothetical protein complement(1152393..1152878) Chlamydophila pneumoniae J138 919775 NP_301062.1 CDS CPj1007 NC_002491.1 1153095 1153316 D hypothetical protein 1153095..1153316 Chlamydophila pneumoniae J138 919753 NP_301063.1 CDS CPj1008 NC_002491.1 1153334 1154632 D hypothetical protein 1153334..1154632 Chlamydophila pneumoniae J138 919752 NP_301064.1 CDS map NC_002491.1 1154589 1155464 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase complement(1154589..1155464) Chlamydophila pneumoniae J138 919776 NP_301065.1 CDS CPj1010 NC_002491.1 1155470 1156078 R hypothetical protein complement(1155470..1156078) Chlamydophila pneumoniae J138 919780 NP_301066.1 CDS CPj1011 NC_002491.1 1156305 1156712 R hypothetical protein complement(1156305..1156712) Chlamydophila pneumoniae J138 919787 NP_301067.1 CDS yzeB NC_002491.1 1156824 1158599 R ABC transporter permease complement(1156824..1158599) Chlamydophila pneumoniae J138 919790 NP_301068.1 CDS fumC NC_002491.1 1158651 1160033 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1158651..1160033 Chlamydophila pneumoniae J138 919783 NP_301069.1 CDS ychM NC_002491.1 1160135 1161832 R sulfate transporter complement(1160135..1161832) Chlamydophila pneumoniae J138 919014 NP_301070.1 CDS CPj1015 NC_002491.1 1162040 1163302 D possible IM protein; hypothetical protein 1162040..1163302 Chlamydophila pneumoniae J138 919781 NP_301071.1 CDS CPj1016 NC_002491.1 1163448 1165307 D hypothetical protein 1163448..1165307 Chlamydophila pneumoniae J138 919778 NP_301072.1 CDS ispH NC_002491.1 1165412 1166344 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1165412..1166344 Chlamydophila pneumoniae J138 919793 NP_301073.1 CDS CPj1018 NC_002491.1 1166304 1167038 D hypothetical protein 1166304..1167038 Chlamydophila pneumoniae J138 919782 NP_301074.1 CDS CPj1019 NC_002491.1 1167041 1168534 R hypothetical protein complement(1167041..1168534) Chlamydophila pneumoniae J138 918977 NP_301075.1 CDS CPj1020 NC_002491.1 1168553 1170085 R hypothetical protein complement(1168553..1170085) Chlamydophila pneumoniae J138 918997 NP_301076.1 CDS lcrH_2 NC_002491.1 1170101 1170619 R low calcium response protein H complement(1170101..1170619) Chlamydophila pneumoniae J138 919792 NP_301077.1 CDS CPj1022 NC_002491.1 1170619 1172079 R hypothetical protein complement(1170619..1172079) Chlamydophila pneumoniae J138 919795 NP_301078.1 CDS CPj1023 NC_002491.1 1172441 1172740 D hypothetical protein 1172441..1172740 Chlamydophila pneumoniae J138 919798 NP_301079.1 CDS xerD NC_002491.1 1172737 1173642 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(1172737..1173642) Chlamydophila pneumoniae J138 918963 NP_301080.1 CDS pgi NC_002491.1 1173708 1175288 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1173708..1175288 Chlamydophila pneumoniae J138 918954 NP_301081.1 CDS CPj1026 NC_002491.1 1175403 1175546 D LtuA protein 1175403..1175546 Chlamydophila pneumoniae J138 919797 NP_301082.1 CDS CPj1027 NC_002491.1 1175581 1177161 D hypothetical protein 1175581..1177161 Chlamydophila pneumoniae J138 919801 NP_301083.1 CDS mdhC NC_002491.1 1177419 1178405 D catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 1177419..1178405 Chlamydophila pneumoniae J138 919802 NP_301084.1 CDS CPj1029 NC_002491.1 1178411 1179250 D hypothetical protein 1178411..1179250 Chlamydophila pneumoniae J138 919803 NP_301085.1 CDS CPj1030 NC_002491.1 1179243 1180289 R D-amino acid dehyrogenase complement(1179243..1180289) Chlamydophila pneumoniae J138 919804 NP_301086.1 CDS arcD NC_002491.1 1180510 1181955 R arginine/ornithine antiporter complement(1180510..1181955) Chlamydophila pneumoniae J138 919805 NP_301087.1 CDS CPj1032 NC_002491.1 1181966 1182553 R hypothetical protein complement(1181966..1182553) Chlamydophila pneumoniae J138 919806 NP_301088.1 CDS CPj1033 NC_002491.1 1182587 1183903 R hypothetical protein complement(1182587..1183903) Chlamydophila pneumoniae J138 919807 NP_301089.1 CDS CPj1034 NC_002491.1 1184132 1184920 R hypothetical protein complement(1184132..1184920) Chlamydophila pneumoniae J138 919808 NP_301090.1 CDS aroDE NC_002491.1 1184970 1186403 R AroDE; bifunctional enzyme; can convert 3-dehydroquinate to 3-dehydroshkimate and then to shikimate; involved in the synthesis of aromatic amino acids and other metabolites; type I 3-DHQase; bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase complement(1184970..1186403) Chlamydophila pneumoniae J138 919809 NP_301091.1 CDS aroB NC_002491.1 1186384 1187538 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(1186384..1187538) Chlamydophila pneumoniae J138 919811 NP_301092.1 CDS aroC NC_002491.1 1187523 1188602 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1187523..1188602) Chlamydophila pneumoniae J138 919812 NP_301093.1 CDS aroL NC_002491.1 1188599 1189129 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(1188599..1189129) Chlamydophila pneumoniae J138 919810 NP_301094.1 CDS aroA NC_002491.1 1189065 1190402 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1189065..1190402) Chlamydophila pneumoniae J138 919800 NP_301095.1 CDS CPj1040 NC_002491.1 1190473 1191144 R hypothetical protein complement(1190473..1191144) Chlamydophila pneumoniae J138 919799 NP_301096.1 CDS bioA NC_002491.1 1191126 1192397 R adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(1191126..1192397) Chlamydophila pneumoniae J138 919813 NP_301097.1 CDS bioD NC_002491.1 1192334 1192993 R dethiobiotin synthetase complement(1192334..1192993) Chlamydophila pneumoniae J138 919814 NP_301098.1 CDS bioF_2 NC_002491.1 1192972 1194120 R oxononanoate synthase complement(1192972..1194120) Chlamydophila pneumoniae J138 919817 NP_301099.1 CDS bioB NC_002491.1 1194099 1195094 R biotin synthase complement(1194099..1195094) Chlamydophila pneumoniae J138 919818 NP_301100.1 CDS CPj1045 NC_002491.1 1195301 1195993 R hypothetical protein complement(1195301..1195993) Chlamydophila pneumoniae J138 919819 NP_301101.1 CDS phhA NC_002491.1 1195990 1197078 R catalyzes the formation of tyrosine, dihydroxyphenylalanine, and 5-hydroxytryptophan from phenylalanine, tyrosine, and tryptophan respectively; aromatic amino acid hydroxylase complement(1195990..1197078) Chlamydophila pneumoniae J138 919820 NP_301102.1 CDS dapB NC_002491.1 1196955 1197749 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1196955..1197749 Chlamydophila pneumoniae J138 919816 NP_301103.1 CDS asd NC_002491.1 1198009 1199010 D catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase 1198009..1199010 Chlamydophila pneumoniae J138 919864 NP_301104.1 CDS lysC NC_002491.1 1198998 1200320 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 1198998..1200320 Chlamydophila pneumoniae J138 919815 NP_301105.1 CDS dapA NC_002491.1 1200329 1201204 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1200329..1201204 Chlamydophila pneumoniae J138 919821 NP_301106.1 CDS CPj1051 NC_002491.1 1201365 1201676 D hypothetical protein 1201365..1201676 Chlamydophila pneumoniae J138 919822 NP_301107.1 CDS CPj1052 NC_002491.1 1201820 1202575 D hypothetical protein 1201820..1202575 Chlamydophila pneumoniae J138 919824 NP_301108.1 CDS CPj1053 NC_002491.1 1202556 1203107 D hypothetical protein 1202556..1203107 Chlamydophila pneumoniae J138 919860 NP_301109.1 CDS CPj1054 NC_002491.1 1203437 1203730 D hypothetical protein 1203437..1203730 Chlamydophila pneumoniae J138 919858 NP_301110.1 CDS CPj1055 NC_002491.1 1206028 1206858 D hypothetical protein 1206028..1206858 Chlamydophila pneumoniae J138 919857 NP_301111.1 CDS CPj1056 NC_002491.1 1206861 1207565 D hypothetical protein 1206861..1207565 Chlamydophila pneumoniae J138 919854 NP_301112.1 CDS CPj1057 NC_002491.1 1207831 1209933 D hypothetical protein 1207831..1209933 Chlamydophila pneumoniae J138 919856 NP_301113.1 CDS CPj1058 NC_002491.1 1210082 1211173 D hypothetical protein 1210082..1211173 Chlamydophila pneumoniae J138 919825 NP_301114.1 CDS ksgA NC_002491.1 1211182 1212015 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1211182..1212015 Chlamydophila pneumoniae J138 919826 NP_301115.1 CDS tktB_2 NC_002491.1 1212058 1213992 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(1212058..1213992) Chlamydophila pneumoniae J138 919827 NP_301116.1 CDS CPj1061 NC_002491.1 1213997 1214254 R hypothetical protein complement(1213997..1214254) Chlamydophila pneumoniae J138 919828 NP_301117.1 CDS xseA NC_002491.1 1214490 1216154 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1214490..1216154) Chlamydophila pneumoniae J138 919829 NP_301118.1 CDS tpiA NC_002491.1 1216285 1217049 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1216285..1217049 Chlamydophila pneumoniae J138 919830 NP_301119.1 CDS CPj1064 NC_002491.1 1217053 1217232 D hypothetical protein 1217053..1217232 Chlamydophila pneumoniae J138 919832 NP_301120.1 CDS CPj1065 NC_002491.1 1217259 1217429 R hypothetical protein complement(1217259..1217429) Chlamydophila pneumoniae J138 919834 NP_301121.1 CDS secG NC_002491.1 1217469 1217825 D preprotein translocase subunit SecG 1217469..1217825 Chlamydophila pneumoniae J138 919833 NP_301122.1 CDS def NC_002491.1 1218069 1218629 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1218069..1218629 Chlamydophila pneumoniae J138 919831 NP_301123.1 CDS rnhB_2 NC_002491.1 1218696 1219592 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII complement(1218696..1219592) Chlamydophila pneumoniae J138 919823 NP_301124.1 CDS yfgA NC_002491.1 1219847 1220278 D HTH transcriptional regulator 1219847..1220278 Chlamydophila pneumoniae J138 919835 NP_301125.1 CDS CPj1070 NC_002491.1 1220475 1221845 R hypothetical protein complement(1220475..1221845) Chlamydophila pneumoniae J138 919836 NP_301126.1 CDS CPj1071 NC_002491.1 1222217 1223659 R hypothetical protein complement(1222217..1223659) Chlamydophila pneumoniae J138 919837 NP_301127.1 CDS CPj1072 NC_002491.1 1224304 1225173 D hypothetical protein 1224304..1225173 Chlamydophila pneumoniae J138 919838 NP_301128.1 CDS CPj1073 NC_002491.1 1225346 1226170 D outer membrane protein 1225346..1226170 Chlamydophila pneumoniae J138 919839 CPjt01 tRNA tRNA-Met NC_002491.1 87120 87192 R tRNA-Met complement(87120..87192) Chlamydophila pneumoniae J138 918859 CPjt02 tRNA tRNA-Thr NC_002491.1 89327 89398 R tRNA-Thr complement(89327..89398) Chlamydophila pneumoniae J138 918863 CPjt03 tRNA tRNA-Trp NC_002491.1 90669 90740 R tRNA-Trp complement(90669..90740) Chlamydophila pneumoniae J138 918865 CPjt04 tRNA tRNA-Asn NC_002491.1 164029 164100 D tRNA-Asn 164029..164100 Chlamydophila pneumoniae J138 918788 CPjt05 tRNA tRNA-Met NC_002491.1 198940 199012 R tRNA-Met complement(198940..199012) Chlamydophila pneumoniae J138 918946 CPjt06 tRNA tRNA-Met NC_002491.1 199028 199101 R tRNA-Met complement(199028..199101) Chlamydophila pneumoniae J138 918947 CPjt07 tRNA tRNA-Ile NC_002491.1 268614 268687 D tRNA-Ile 268614..268687 Chlamydophila pneumoniae J138 919016 CPjt08 tRNA tRNA-Ala NC_002491.1 268692 268764 D tRNA-Ala 268692..268764 Chlamydophila pneumoniae J138 918999 CPjt09 tRNA tRNA-Tyr NC_002491.1 292939 293021 R tRNA-Tyr complement(292939..293021) Chlamydophila pneumoniae J138 919040 CPjt10 tRNA tRNA-Thr NC_002491.1 293027 293099 R tRNA-Thr complement(293027..293099) Chlamydophila pneumoniae J138 919041 CPjt11 tRNA tRNA-Val NC_002491.1 295697 295769 R tRNA-Val complement(295697..295769) Chlamydophila pneumoniae J138 918992 CPjt12 tRNA tRNA-Asp NC_002491.1 295773 295846 R tRNA-Asp complement(295773..295846) Chlamydophila pneumoniae J138 919044 CPjt13 tRNA tRNA-Pro NC_002491.1 409557 409631 R tRNA-Pro complement(409557..409631) Chlamydophila pneumoniae J138 919131 CPjt14 tRNA tRNA-Arg NC_002491.1 461850 461923 D tRNA-Arg 461850..461923 Chlamydophila pneumoniae J138 919152 CPjt15 tRNA tRNA-Ser NC_002491.1 626224 626307 D tRNA-Ser 626224..626307 Chlamydophila pneumoniae J138 919297 CPjt16 tRNA tRNA-Phe NC_002491.1 630693 630765 D tRNA-Phe 630693..630765 Chlamydophila pneumoniae J138 919847 CPjt17 tRNA tRNA-Leu NC_002491.1 671557 671639 D tRNA-Leu 671557..671639 Chlamydophila pneumoniae J138 919341 CPjt18 tRNA tRNA-Arg NC_002491.1 676585 676658 R tRNA-Arg complement(676585..676658) Chlamydophila pneumoniae J138 919346 CPjt19 tRNA tRNA-Leu NC_002491.1 679499 679578 D tRNA-Leu 679499..679578 Chlamydophila pneumoniae J138 919352 CPjt20 tRNA tRNA-Ser NC_002491.1 707680 707761 D tRNA-Ser 707680..707761 Chlamydophila pneumoniae J138 919379 CPjt21 tRNA tRNA-Leu NC_002491.1 715210 715292 D tRNA-Leu 715210..715292 Chlamydophila pneumoniae J138 919387 CPjt22 tRNA tRNA-Leu NC_002491.1 738724 738807 D tRNA-Leu 738724..738807 Chlamydophila pneumoniae J138 919420 CPjt23 tRNA tRNA-Gly NC_002491.1 780931 781001 R tRNA-Gly complement(780931..781001) Chlamydophila pneumoniae J138 919459 CPjt24 tRNA tRNA-Glu NC_002491.1 784143 784217 R tRNA-Glu complement(784143..784217) Chlamydophila pneumoniae J138 918775 CPjt25 tRNA tRNA-Lys NC_002491.1 784243 784315 R tRNA-Lys complement(784243..784315) Chlamydophila pneumoniae J138 919491 CPjt26 tRNA tRNA-Thr NC_002491.1 786029 786101 R tRNA-Thr complement(786029..786101) Chlamydophila pneumoniae J138 919469 CPjt27 tRNA tRNA-Arg NC_002491.1 806662 806734 R tRNA-Arg complement(806662..806734) Chlamydophila pneumoniae J138 919490 CPjt28 tRNA tRNA-Ala NC_002491.1 835440 835512 R tRNA-Ala complement(835440..835512) Chlamydophila pneumoniae J138 919510 CPjt29 tRNA tRNA-Pro NC_002491.1 843247 843320 D tRNA-Pro 843247..843320 Chlamydophila pneumoniae J138 919521 CPjt30 tRNA tRNA-Arg NC_002491.1 876721 876794 R tRNA-Arg complement(876721..876794) Chlamydophila pneumoniae J138 919547 CPjt31 tRNA tRNA-Gly NC_002491.1 960857 960928 D tRNA-Gly 960857..960928 Chlamydophila pneumoniae J138 919611 CPjt32 tRNA tRNA-His NC_002491.1 999270 999344 D tRNA-His 999270..999344 Chlamydophila pneumoniae J138 919644 CPjt33 tRNA tRNA-Cys NC_002491.1 1029854 1029924 D tRNA-Cys 1029854..1029924 Chlamydophila pneumoniae J138 919663 CPjt34 tRNA tRNA-Gln NC_002491.1 1084954 1085025 D tRNA-Gln 1084954..1085025 Chlamydophila pneumoniae J138 919711 CPjt35 tRNA tRNA-Val NC_002491.1 1133794 1133867 D tRNA-Val 1133794..1133867 Chlamydophila pneumoniae J138 919747 CPjt36 tRNA tRNA-Ser NC_002491.1 1138440 1138523 D tRNA-Ser 1138440..1138523 Chlamydophila pneumoniae J138 919762 CPjt37 tRNA tRNA-Leu NC_002491.1 1172269 1172350 D tRNA-Leu 1172269..1172350 Chlamydophila pneumoniae J138 919796 CPjt38 tRNA tRNA-Ser NC_002491.1 1226280 1226363 R tRNA-Ser complement(1226280..1226363) Chlamydophila pneumoniae J138 919840 CPjr01 rRNA CPjr01 NC_002491.1 999883 1001438 D 16S ribosomal RNA 999883..1001438 Chlamydophila pneumoniae J138 5204452 CPjr02 rRNA CPjr02 NC_002491.1 1001658 1004600 D 23S ribosomal RNA 1001658..1004600 Chlamydophila pneumoniae J138 5204453 CPjr03 rRNA CPjr03 NC_002491.1 1004712 1004831 D 5S ribosomal RNA 1004712..1004831 Chlamydophila pneumoniae J138 5204454