-- dump date 20140619_040938 -- class Genbank::CDS -- table cds_note -- id note YP_001997630.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001997631.1 KEGG: cte:CT0001 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain YP_001997632.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: cte:CT2288 recombination/replication protein RecF YP_001997633.1 KEGG: cte:CT2287 hypothetical protein YP_001997634.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: cte:CT2285 rubredoxin:oxygen oxidoreductase YP_001997635.1 PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B; KEGG: cte:CT2284 DNA polymerase family B protein YP_001997636.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001997637.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pvi:Cvib_1136 protein tyrosine phosphatase YP_001997638.1 PFAM: cytochrome c class I; KEGG: cte:CT2080 sulfide dehydrogenase, cytochrome subunit YP_001997639.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: cte:CT2081 sulfide dehydrogenase, flavoprotein subunit YP_001997640.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_001997641.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_001997642.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cte:CT2264 peptidyl-prolyl cis-trans isomerase SurA YP_001997643.1 KEGG: cte:CT2263 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II YP_001997644.1 PFAM: protein of unknown function UPF0102; KEGG: cte:CT2262 predicted endonuclease YP_001997645.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001997646.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cte:CT2260 ribonuclease G YP_001997647.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_001997648.1 KEGG: cte:CT2258 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001997649.1 KEGG: cte:CT2257 hypothetical protein YP_001997650.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cte:CT2256 geranylgeranyl hydrogenase YP_001997651.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001997652.1 KEGG: sde:Sde_2333 hypothetical protein YP_001997653.1 PFAM: Rhodanese domain protein; KEGG: cph:Cpha266_0124 rhodanese domain protein YP_001997654.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: cte:CT2251 DsrN protein YP_001997655.1 TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: cte:CT2250 sulfite reductase, dissimilatory-type, gamma subunit YP_001997656.1 KEGG: cte:CT2249 sulfite reductase, dissimilatory-type, alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region YP_001997657.1 KEGG: cte:CT0853 sulfite reductase, dissimilatory-type, beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region YP_001997658.1 unknown function YP_001997659.1 KEGG: cte:CT2246 hypothetical protein YP_001997660.1 KEGG: cte:CT2245 hypothetical protein YP_001997661.1 PFAM: Nitrate reductase gamma subunit; KEGG: cte:CT2244 DsrM protein YP_001997662.1 KEGG: cte:CT2243 DsrK protein YP_001997663.1 KEGG: cte:CT2242 cytochrome DsrJ YP_001997664.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT2241 polysulfide reductase, subunit B YP_001997665.1 PFAM: Polysulphide reductase NrfD; KEGG: cte:CT2240 polysulfide reductase, subunit C YP_001997666.1 TIGRFAM: siroheme synthase; KEGG: cte:CT2239 porphyrin biosynthesis protein YP_001997667.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT2238 siroheme synthetase YP_001997668.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: pvi:Cvib_0054 phosphoribulokinase/uridine kinase YP_001997669.1 KEGG: rca:Rcas_0128 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001997670.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: cte:CT2237 hypothetical protein YP_001997671.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: cte:CT2236 muramoyltetrapeptide carboxypeptidase YP_001997672.1 PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: cte:CT2235 ATP synthase F1, epsilon subunit YP_001997673.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001997674.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: cte:CT2233 thiol:disulfide interchange protein, thioredoxin family protein YP_001997675.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_001997676.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: cte:CT2230 toluene transport protein YP_001997677.1 PFAM: protein of unknown function DUF1458; KEGG: cte:CT2229 hypothetical protein YP_001997678.1 PFAM: protein of unknown function DUF81; KEGG: cte:CT0859 hypothetical protein YP_001997679.1 KEGG: cte:CT0860 hypothetical protein YP_001997680.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: cte:CT0102 transporter YP_001997681.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: cte:CT0103 PilB-related protein YP_001997682.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cte:CT0104 multidrug resistance protein YP_001997683.1 PFAM: secretion protein HlyD family protein; KEGG: cte:CT0105 multidrug resistance protein A YP_001997684.1 PFAM: UspA domain protein; KEGG: cte:CT0106 universal stress protein family YP_001997685.1 PFAM: outer membrane efflux protein; KEGG: cte:CT0107 outer membrane protein YP_001997686.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cte:CT0108 sigma-54-dependent transcriptional regulator YP_001997687.1 KEGG: cte:CT0109 hypothetical protein YP_001997688.1 KEGG: cte:CT0116 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001997689.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cte:CT0117 sulfide-quinone reductase YP_001997690.1 KEGG: cte:CT0118 hypothetical protein YP_001997691.1 KEGG: cph:Cpha266_1345 hypothetical protein YP_001997692.1 KEGG: acr:Acry_2613 hypothetical protein YP_001997693.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: nar:Saro_1585 dienelactone hydrolase YP_001997694.1 PFAM: nitroreductase; KEGG: cte:CT0120 nitroreductase family protein YP_001997695.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: cte:CT0121 potassium channel protein YP_001997696.1 KEGG: cte:CT0122 hypothetical protein YP_001997697.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001997698.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: cte:CT0124 membrane-associated zinc metalloprotease YP_001997699.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001997700.1 catalyzes the hydrolysis of acylphosphate YP_001997701.1 KEGG: cte:CT0127 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001997702.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: cte:CT0129 orotidine-5'-phosphate decarboxylase YP_001997703.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_001997704.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: cph:Cpha266_2054 CRISPR-associated protein Cas1 YP_001997705.1 KEGG: cph:Cpha266_2052 hypothetical protein YP_001997706.1 TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: cph:Cpha266_2050 CRISPR-associated protein, Csm1 family YP_001997707.1 TIGRFAM: CRISPR-associated protein, Csm2 family; KEGG: cph:Cpha266_2049 CRISPR-associated protein, Csm2 family YP_001997708.1 TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: cph:Cpha266_2048 CRISPR-associated RAMP protein, Csm3 family YP_001997709.1 TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; KEGG: cph:Cpha266_2047 CRISPR-associated RAMP protein, Csm4 family YP_001997710.1 KEGG: cph:Cpha266_2046 CRISPR-associated RAMP protein, Csm5 family YP_001997711.1 KEGG: cph:Cpha266_2046 CRISPR-associated RAMP protein, Csm5 family YP_001997712.1 KEGG: cph:Cpha266_2045 hypothetical protein YP_001997713.1 TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57; KEGG: cph:Cpha266_2044 CRISPR-associated protein Cas6 YP_001997714.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; domain of unknown function DUF1731; KEGG: cte:CT0131 hypothetical protein YP_001997715.1 PFAM: RNP-1 like RNA-binding protein; KEGG: cte:CT0132 RNA-binding protein YP_001997716.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cte:CT0133 ammonium transporter YP_001997717.1 PFAM: nitrogen regulatory protein P-II; KEGG: cte:CT0134 P-II family protein YP_001997718.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: plt:Plut_0092 TPR repeat YP_001997719.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: cte:CT0136 segregation and condensation protein A YP_001997720.1 PFAM: conserved hypothetical protein; KEGG: cte:CT0137 hypothetical protein YP_001997721.1 PFAM: protein of unknown function UPF0079; KEGG: cte:CT0138 nucleotide-binding protein YP_001997722.1 PFAM: peptidase M22 glycoprotease; KEGG: cte:CT0139 protease YP_001997723.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: cte:CT0140 iojap-related protein YP_001997724.1 KEGG: cte:CT0141 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_001997725.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001997726.1 KEGG: pvi:Cvib_0175 hypothetical protein YP_001997727.1 KEGG: cte:CT2147 hypothetical protein YP_001997728.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: cte:CT2146 iron-sulfur cluster-binding protein YP_001997729.1 PFAM: creatinase; peptidase M24; KEGG: cte:CT2145 peptidase, M24 family protein YP_001997730.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: cte:CT2142 electron transfer flavoprotein, beta subunit YP_001997731.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: cte:CT2141 electron transfer flavoprotein, alpha subunit YP_001997732.1 PFAM: thioesterase superfamily protein; KEGG: cte:CT2140 hypothetical protein YP_001997733.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: cte:CT2139 hypothetical protein YP_001997734.1 KEGG: cte:CT2138 hypothetical protein YP_001997735.1 PFAM: glycosyl transferase family 9; KEGG: cte:CT2137 heptosyltransferase YP_001997736.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cte:CT2136 AP (apurinic or apyrimidinic) endonuclease, Xth family YP_001997737.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001997738.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cte:CT2134 single-strand binding protein YP_001997739.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001997740.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001997741.1 KEGG: cte:CT2131 hypothetical protein YP_001997742.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001997743.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001997744.1 PFAM: ribosomal protein L35; KEGG: cte:CT2128 50S ribosomal protein L35 YP_001997745.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_001997746.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001997747.1 TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197; KEGG: cte:CT2125 chlorophyllide reductase, BchZ subunit YP_001997748.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cte:CT2124 beta-N-acetylglucosaminidase YP_001997749.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_001997754.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: cte:CT2119 ribonuclease III YP_001997755.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: cte:CT2118 3-oxoacyl-(acyl-carrier-protein) synthase II YP_001997756.1 carries the fatty acid chain in fatty acid biosynthesis YP_001997757.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cte:CT2116 3-oxoacyl-[acyl-carrier protein] reductase YP_001997758.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cte:CT2115 malonyl CoA-acyl carrier protein transacylase YP_001997759.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001997760.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_001997761.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001997762.1 PFAM: protein of unknown function DUF177; KEGG: cte:CT2111 hypothetical protein YP_001997763.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: cph:Cpha266_2479 excinuclease ABC, C subunit domain protein YP_001997764.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: pvi:Cvib_0204 protein of unknown function DUF306, MetA and HslJ YP_001997765.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cte:CT2107 2-isopropylmalate synthase YP_001997766.1 PFAM: periplasmic solute binding protein; KEGG: cte:CT2106 adhesion protein YP_001997767.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT2105 ABC transporter, ATP-binding protein YP_001997768.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: cte:CT2104 ABC 3 transport family protein YP_001997769.1 KEGG: cte:CT2103 hypothetical protein YP_001997770.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_001997771.1 PFAM: protein of unknown function DUF190; KEGG: cte:CT2101 hypothetical protein YP_001997772.1 PFAM: protein of unknown function DUF114; KEGG: gvi:glr2268 hypothetical protein YP_001997773.1 TIGRFAM: transcriptional regulator, y4mF family; PFAM: helix-turn-helix domain protein; KEGG: pvi:Cvib_0662 transcriptional regulator, XRE family YP_001997774.1 TIGRFAM: HipA N-terminal domain protein; KEGG: cph:Cpha266_0248 hypothetical protein YP_001997775.1 PFAM: HipA domain protein; KEGG: cph:Cpha266_0247 HipA domain protein YP_001997776.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_001997777.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: cte:CT2098 recombination/replication protein RecO YP_001997778.1 TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: cte:CT2097 hypothetical protein YP_001997779.1 KEGG: cte:CT2216 hypothetical protein YP_001997780.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001997781.1 PFAM: Exonuclease VII small subunit; KEGG: cte:CT2214 exodeoxyribonuclease, small subunit YP_001997782.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001997783.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate YP_001997784.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: cte:CT2211 phosphocarrier protein HPr YP_001997785.1 PFAM: glycosyl transferase group 1; KEGG: cte:CT2210 glycosyl transferase YP_001997786.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT2209 glycosyl transferase YP_001997787.1 KEGG: cch:Cag_1865 hypothetical protein YP_001997788.1 PFAM: glycosyl transferase group 1; KEGG: cte:CT2207 glycosyl transferase, group 1 family protein YP_001997789.1 PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: cte:CT2206 polysaccharide efflux transporter YP_001997790.1 KEGG: cte:CT2205 hypothetical protein YP_001997791.1 KEGG: cte:CT2204 hypothetical protein YP_001997792.1 PFAM: protein of unknown function DUF302; KEGG: ppd:Ppro_3686 protein of unknown function DUF302 YP_001997793.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: cph:Cpha266_1912 magnesium and cobalt transport protein CorA YP_001997794.1 PFAM: conserved hypothetical protein; KEGG: cte:CT2200 hypothetical protein YP_001997795.1 KEGG: dps:DP0174 hypothetical protein YP_001997796.1 KEGG: cph:Cpha266_0751 hypothetical protein YP_001997797.1 PFAM: PASTA domain containing protein; KEGG: mma:MM_2122 serine/threonine protein kinase YP_001997798.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: cte:CT2196 EntD/Gsp/HetI/Sfp family protein YP_001997799.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001997800.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001997801.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001997802.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001997803.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001997804.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001997805.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001997806.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001997807.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001997808.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001997809.1 PFAM: ribosomal protein L22/L17; KEGG: cte:CT2184 50S ribosomal protein L22 YP_001997810.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001997811.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001997812.1 one of the stabilizing components for the large ribosomal subunit YP_001997813.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001997814.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001997815.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001997816.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001997817.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_001997818.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001997819.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001997820.1 binds 5S rRNA along with protein L5 and L25 YP_001997821.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001997822.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001997823.1 late assembly protein YP_001997824.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001997825.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: cte:CT2168 methionine aminopeptidase YP_001997826.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001997827.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_001997828.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001997829.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001997830.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001997831.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001997832.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001997833.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001997834.1 PFAM: Nucleotidyl transferase; KEGG: cte:CT2159 mannose-1-phosphate guanylyltransferase YP_001997835.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001997837.1 KEGG: mgm:Mmc1_0772 hypothetical protein YP_001997838.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pla:Plav_0452 MscS mechanosensitive ion channel YP_001997839.1 PFAM: extracellular solute-binding protein family 3; Ion transport 2 domain protein; KEGG: cch:Cag_0243 extracellular solute-binding protein, family 3 YP_001997840.1 PFAM: ferredoxin-dependent glutamate synthase; Rieske [2Fe-2S] domain protein; KEGG: jan:Jann_3121 ferredoxin-dependent glutamate synthase YP_001997841.1 KEGG: hch:HCH_04190 hypothetical protein YP_001997842.1 KEGG: eba:ebA2161 hypothetical protein YP_001997843.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001997844.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001997845.1 PFAM: protein of unknown function DUF77; KEGG: cte:CT2153 hypothetical protein YP_001997846.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_001997847.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_001997848.1 light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production YP_001997849.1 KEGG: sfr:Sfri_0885 hypothetical protein YP_001997850.1 PFAM: MscS Mechanosensitive ion channel; KEGG: cte:CT2016 conserved hypothetical protein, AefA YP_001997851.1 PFAM: Radical SAM domain protein; KEGG: ote:Oter_0373 radical SAM domain protein YP_001997852.1 TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cte:CT2014 bacteriochlorophyll synthase, 23 kDa subunit YP_001997853.1 KEGG: cte:CT2013 hypothetical protein YP_001997854.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_001997855.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: cte:CT2011 histidinol phosphatase-related protein YP_001997856.1 KEGG: cte:CT2010 oxygen-independent coproporphyrinogen III oxidase, TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001997857.1 KEGG: cte:CT2009 hypothetical protein YP_001997858.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_001997859.1 PFAM: ROK family protein; KEGG: cte:CT2007 glucokinase YP_001997860.1 PFAM: phosphoribosyltransferase; KEGG: cte:CT2006 competence protein YP_001997861.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_001997862.1 PFAM: protein of unknown function UPF0118; KEGG: cte:CT2004 hypothetical protein YP_001997863.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_001997864.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cte:CT2001 bacterioferritin comigratory protein, thiol peroxidase YP_001997865.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cte:CT2000 CBS domain protein YP_001997866.1 KEGG: cte:CT1998 hypothetical protein YP_001997867.1 KEGG: cte:CT1997 hypothetical protein YP_001997868.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cte:CT1995 IscS protein YP_001997869.1 PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cte:CT1994 IscU protein YP_001997870.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001997871.1 catalyzes the synthesis of bacteriochlorophyll c which is the primary pigment in the chlorosomes of the photosynthetic green bacteria YP_001997872.1 PFAM: phosphatidate cytidylyltransferase; KEGG: cte:CT1990 hypothetical protein YP_001997873.1 PFAM: metallophosphoesterase; KEGG: cte:CT1989 hypothetical protein YP_001997874.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_001997875.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT1987 glycosyl transferase YP_001997876.1 PFAM: WD-40 repeat protein; KEGG: cph:Cpha266_2355 WD-40 repeat protein YP_001997877.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_1892 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_001997878.1 PFAM: Class I peptide chain release factor; KEGG: cte:CT1983 hypothetical protein YP_001997879.1 PFAM: Peptidase M23; KEGG: pvi:Cvib_0313 peptidase M23B YP_001997880.1 KEGG: cte:CT1979 hypothetical protein YP_001997881.1 PFAM: histidine triad (HIT) protein; KEGG: pub:SAR11_0834 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase YP_001997882.1 PFAM: heat shock protein Hsp20; KEGG: cte:CT1970 heat shock protein, HSP20 family YP_001997883.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge YP_001997884.1 PFAM: aldo/keto reductase; KEGG: cph:Cpha266_1920 aldo/keto reductase YP_001997885.1 KEGG: cte:CT1959 magnesium-protoporphyrin IX monomethyl ester oxidative cyclase, 66 kDa subunit; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001997886.1 catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine YP_001997887.1 catalyzes the formation of Mg-protoporphyrin IX from protoporphyrin IX and Mg(2+); first committed step of chlorophyll biosynthesis YP_001997888.1 KEGG: cte:CT1956 hypothetical protein YP_001997889.1 KEGG: cte:CT1955 magnesium-chelatase, bacteriochlorophyll c-specific subunit; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase YP_001997890.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cte:CT1953 ferric siderophore receptor, , TonB receptor family YP_001997891.1 PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; KEGG: cte:CT1951 8-amino-7-oxononanoate synthase YP_001997892.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cte:CT1949 NAD-dependent epimerase/dehydratase family protein/3-beta hydroxysteroid dehydrogenase/isomerase family protein YP_001997893.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: cte:CT1948 DNA polymerase III, delta subunit YP_001997894.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cte:CT1947 single-strand binding protein YP_001997895.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cte:CT1946 dihydroorotate dehydrogenase, electron transfer subunit YP_001997896.1 KEGG: cte:CT1945 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001997897.1 KEGG: cte:CT1943 chlorosome envelope protein C YP_001997898.1 PFAM: bacteriochlorophyll C binding protein; KEGG: cte:CT1942 chlorosome envelope protein A YP_001997899.1 KEGG: cte:CT1940 hypothetical protein YP_001997900.1 KEGG: cte:CT1939 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001997901.1 KEGG: cte:CT1938 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_001997902.1 TIGRFAM: dihydroneopterin aldolase; KEGG: cte:CT1937 dihydroneopterin aldolase YP_001997903.1 KEGG: cte:CT1936 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_001997904.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_001997905.1 TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: cte:CT1934 trigger factor YP_001997906.1 PFAM: peptidase M16 domain protein; KEGG: cte:CT1932 peptidase, M16 family YP_001997907.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: cte:CT1931 dihydroflavonol 4-reductase family YP_001997908.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_001997909.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: cte:CT1929 TIM-barrel protein, NifR3 family YP_001997910.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: cte:CT1928 aspartate-semialdehyde dehydrogenase YP_001997911.1 KEGG: cte:CT1924 hypothetical protein YP_001997912.1 SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: cte:CT1923 ComEA-related protein YP_001997913.1 KEGG: cte:CT1922 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_001997914.1 PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cte:CT1921 cysteine synthase/cystathionine beta-synthase family protein YP_001997915.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001997916.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001997917.1 KEGG: bbt:BBta_7695 hypothetical protein YP_001997918.1 PFAM: thymidylate synthase; KEGG: cbh:CLC_0824 thymidylate synthase YP_001997919.1 KEGG: spm:spyM18_1285 hypothetical protein YP_001997920.1 PFAM: Domain of unknown function DUF1863; KEGG: ajs:Ajs_2628 hypothetical protein YP_001997921.1 KEGG: ajs:Ajs_2629 hypothetical protein YP_001997922.1 KEGG: mmq:MmarC5_1164 hypothetical protein YP_001997923.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT1908 3-oxoadipate enol-lactonase YP_001997924.1 KEGG: cte:CT1907 hypothetical protein YP_001997925.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: cte:CT1906 hypothetical protein YP_001997926.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1901 ABC transporter, ATP-binding protein YP_001997927.1 PFAM: TM2 domain containing protein?; KEGG: plt:Plut_0289 hypothetical protein YP_001997928.1 KEGG: cph:Cpha266_2146 hypothetical protein YP_001997929.1 KEGG: cte:CT1899 acetyltransferase, CysE/LacA/LpxA/NodL family YP_001997930.1 PFAM: FAD dependent oxidoreductase; KEGG: cte:CT1898 protoporphyrinogen oxidase YP_001997931.1 PFAM: MscS Mechanosensitive ion channel; KEGG: plt:Plut_0292 hypothetical protein YP_001997932.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: cte:CT1896 peptidyl-prolyl cis-trans isomerase, FKBP-type YP_001997933.1 PFAM: sodium:neurotransmitter symporter; KEGG: pvi:Cvib_1274 sodium:neurotransmitter symporter YP_001997934.1 KEGG: rme:Rmet_3459 transmembrane protein YP_001997935.1 KEGG: mxa:MXAN_3756 hypothetical protein YP_001997936.1 KEGG: tde:TDE2679 hypothetical protein YP_001997937.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cph:Cpha266_2266 short-chain dehydrogenase/reductase SDR YP_001997938.1 KEGG: cch:Cag_0613 SapC-related protein YP_001997940.1 PFAM: Haemagluttinin domain protein; KEGG: dol:Dole_2286 YadA domain protein YP_001997941.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: cte:CT1894 hydrogenase/sulfur reductase, alpha subunit YP_001997942.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cte:CT1893 hydrogenase/sulfur reductase, delta subunit YP_001997943.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cte:CT1892 hydrogenase/sulfur reductase, gamma subunit YP_001997944.1 KEGG: cte:CT1891 hydrogenase/sulfur reductase, beta subunit YP_001997945.1 PFAM: peptidase U32; KEGG: cte:CT1890 collagenase YP_001997946.1 KEGG: cte:CT1889 hypothetical protein YP_001997947.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cte:CT1888 SpoU rRNA methylase family protein YP_001997948.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: stp:Strop_2703 alkylhydroperoxidase like protein, AhpD family YP_001997949.1 KEGG: plt:Plut_0297 hypothetical protein YP_001997950.1 PFAM: peptidase S16 lon domain protein; KEGG: plt:Plut_0298 ATP-dependent protease YP_001997951.1 PFAM: Integral membrane protein TerC; KEGG: cte:CT1887 hypothetical protein YP_001997952.1 PFAM: acyl-CoA reductase; Aldehyde Dehydrogenase_; KEGG: cte:CT1886 aldehyde dehydrogenase YP_001997953.1 PFAM: Patatin; KEGG: cte:CT1885 hypothetical protein YP_001997954.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: cte:CT1883 hypothetical protein YP_001997955.1 PFAM: glycosyl transferase group 1; KEGG: cte:CT1882 glycosyl transferase YP_001997956.1 KEGG: cph:Cpha266_1229 succinylglutamate desuccinylase/aspartoacylase YP_001997957.1 KEGG: cph:Cpha266_1230 hypothetical protein YP_001997958.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_001997959.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_001997960.1 PFAM: transposase IS200-family protein; KEGG: fjo:Fjoh_0088 hypothetical protein YP_001997961.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: cte:CT1871 oxidoreductase, Sol/DevB family YP_001997962.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: cte:CT1870 transketolase YP_001997963.1 KEGG: cte:CT1868 hypothetical protein YP_001997964.1 PFAM: protein of unknown function DUF541; KEGG: cte:CT1867 hypothetical protein YP_001997965.1 KEGG: cte:CT1866 hypothetical protein YP_001997966.1 KEGG: cte:CT1863 hypothetical protein YP_001997967.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cte:CT1862 hypothetical protein YP_001997968.1 KEGG: plt:Plut_0314 hypothetical protein YP_001997969.1 KEGG: nmu:Nmul_A1697 hypothetical protein YP_001997970.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_001997971.1 PFAM: phospholipase/Carboxylesterase; KEGG: cte:CT1856 serine esterase YP_001997972.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001997973.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: cte:CT1854 Mg2+ transporter MgtE YP_001997974.1 KEGG: cte:CT1853 DNA-3-methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG) YP_001997975.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cte:CT1852 ATPase, ParA family YP_001997976.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cte:CT1851 partitioning protein, ParB family YP_001997977.1 PFAM: dihydrodipicolinate reductase; KEGG: cte:CT1850 dihydrodipicolinate reductase YP_001997978.1 KEGG: cte:CT1849 hypothetical protein YP_001997979.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: cte:CT1848 O-succinylbenzoic acid--CoA ligase YP_001997980.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: cte:CT1847 O-succinylbenzoate-CoA synthase YP_001997981.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_001997982.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT1845 thioesterase, menaquinone synthesis protein YP_001997983.1 KEGG: cph:Cpha266_0655 hypothetical protein YP_001997984.1 PFAM: DinB family protein; KEGG: cte:CT1840 hypothetical protein YP_001997985.1 KEGG: cph:Cpha266_1222 superfamily I DNA and RNA helicase and helicase subunit YP_001997986.1 PFAM: N-acetyltransferase; KEGG: cph:Cpha266_1973 N-acetyltransferase YP_001997987.1 SMART: Rhodanese domain protein; KEGG: cch:Cag_0955 rhodanese-like YP_001997988.1 TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein; KEGG: cte:CT1839 2-oxoglutarate decarboxylase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase YP_001997989.1 TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: cte:CT1838 menaquinone-specific isochorismate synthase YP_001997990.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cte:CT1837 TPR domain protein YP_001997991.1 KEGG: cte:CT1835 heavy-metal-associated domain family protein YP_001997992.1 KEGG: cte:CT1834 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_001997993.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_001997994.1 PFAM: protein of unknown function DUF167; KEGG: cte:CT1832 hypothetical protein YP_001997995.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_001997996.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_001997997.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_001997998.1 PFAM: Sporulation domain protein; KEGG: cte:CT1827 hypothetical protein YP_001997999.1 TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase component 1; KEGG: cte:CT1826 chlorophyllide reductase, BchY subunit YP_001998000.1 KEGG: cph:Cpha266_0092 virulence associated protein B YP_001998001.1 PFAM: PilT protein domain protein; KEGG: cph:Cpha266_0091 PilT protein domain protein YP_001998002.1 TIGRFAM: DGQHR domain protein; KEGG: csa:Csal_1367 hypothetical protein YP_001998004.1 KEGG: mja:MJ0598 modification methylase, type II R/M system 2; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_001998005.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001998006.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_001998007.1 catalyzes branch migration in Holliday junction intermediates YP_001998008.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: cte:CT1574 hypothetical protein YP_001998009.1 PFAM: Aldehyde Dehydrogenase_; KEGG: cte:CT1573 aldehyde dehydrogenase family protein YP_001998010.1 PFAM: Domain of unknown function DUF1848; KEGG: cte:CT1572 hypothetical protein YP_001998011.1 KEGG: cte:CT1571 hypothetical protein YP_001998012.1 KEGG: cte:CT1569 hypothetical protein YP_001998013.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cte:CT1568 protein-tyrosine-phosphatase YP_001998014.1 PFAM: diacylglycerol kinase catalytic region; KEGG: cte:CT1567 BmrU protein YP_001998015.1 KEGG: cte:CT1566 hypothetical protein YP_001998016.1 KEGG: sco:SCO5332 hypothetical protein YP_001998017.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_001998018.1 PFAM: conserved hypothetical protein; KEGG: cte:CT1564 hypothetical protein YP_001998019.1 KEGG: cte:CT1563 hypothetical protein YP_001998020.1 KEGG: cte:CT1561 hypothetical protein YP_001998021.1 KEGG: cte:CT1560 hypothetical protein YP_001998022.1 PFAM: cytochrome c assembly protein; KEGG: cte:CT1559 cytochrome c biogenesis protein YP_001998023.1 KEGG: cte:CT1558 hypothetical protein YP_001998024.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001998025.1 PFAM: surface antigen (D15); Patatin; KEGG: cte:CT1556 hypothetical protein YP_001998026.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: cte:CT1555 acetyl-CoA carboxylase carboxyl transferase subunit beta YP_001998027.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_001998028.1 KEGG: cte:CT1553 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_001998029.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001998030.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pvi:Cvib_0443 RNA polymerase, sigma 32 subunit, RpoH YP_001998031.1 PFAM: protein of unknown function DUF62; KEGG: cte:CT1550 hypothetical protein YP_001998032.1 PFAM: permease YjgP/YjgQ family protein; KEGG: cte:CT1549 hypothetical protein YP_001998033.1 PFAM: peptidase M16 domain protein; KEGG: cte:CT1548 peptidase, M16 family YP_001998034.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001998035.1 KEGG: cte:CT1545 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_001998036.1 PFAM: fructose-bisphosphate aldolase class-I; KEGG: tbd:Tbd_1513 fructose-bisphosphate aldolase YP_001998037.1 KEGG: sru:SRU_1533 hypothetical protein YP_001998038.1 PFAM: LemA family protein; KEGG: cph:Cpha266_2022 LemA family protein YP_001998039.1 PFAM: protein of unknown function DUF477; KEGG: cch:Cag_1773 hypothetical protein YP_001998040.1 PFAM: protein of unknown function DUF477; KEGG: cph:Cpha266_2020 protein of unknown function DUF477 YP_001998041.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_001998042.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: plt:Plut_0398 NifU protein YP_001998043.1 PFAM: protein of unknown function DUF59; KEGG: cte:CT1785 ATP-binding protein, Mrp/Nbp35 family YP_001998044.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001998045.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001998046.1 forms a direct contact with the tRNA during translation YP_001998047.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001998048.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001998049.1 Catalyzes the phosphorylation of UMP to UDP YP_001998050.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_001998051.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT1777 bacteriochlorophyll c8 methyltransferase YP_001998052.1 PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: cte:CT1776 bacteriochlorophyll c3(1) hydratase YP_001998053.1 KEGG: cte:CT1775 hypothetical protein YP_001998054.1 PFAM: class II aldolase/adducin family protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: cte:CT1774 short chain dehydrogenase YP_001998055.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cte:CT1773 hypothetical protein YP_001998056.1 PFAM: ribulose bisphosphate carboxylase large chain; KEGG: cte:CT1772 ribulose-bisphosphate carboxylase large chain YP_001998057.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cte:CT1771 oxidoreductase, short-chain dehydrogenase/reductase family YP_001998058.1 KEGG: cte:CT1770 hypothetical protein YP_001998059.1 KEGG: cte:CT1769 hypothetical protein YP_001998060.1 KEGG: cte:CT1768 hypothetical protein YP_001998061.1 KEGG: cte:CT1767 hypothetical protein YP_001998062.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cte:CT1766 3-oxoacyl-(acyl-carrier-protein) reductase YP_001998063.1 PFAM: TOBE domain protein; KEGG: cte:CT1765 molybdenum-pterin-binding protein YP_001998064.1 PFAM: major intrinsic protein; KEGG: rba:RB4879 nodulin-26 YP_001998065.1 KEGG: cte:CT0450 molybdenum ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase YP_001998066.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cte:CT0451 molybdenum ABC transporter, permease protein YP_001998067.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cch:Cag_0413 molybdenum ABC transporter, periplasmic binding protein YP_001998068.1 TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: cte:CT0453 molybdenum transport system protein ModD YP_001998069.1 PFAM: regulatory protein ArsR; KEGG: cte:CT1728 transcriptional regulator, ArsR family YP_001998070.1 TIGRFAM: redox-active disulfide protein 2; KEGG: cte:CT1727 glutaredoxin family protein YP_001998071.1 PFAM: permease; KEGG: cte:CT1726 hypothetical protein YP_001998072.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cph:Cpha266_0465 protein tyrosine phosphatase YP_001998073.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0455 ABC transporter, ATP-binding protein YP_001998074.1 KEGG: cte:CT0456 hypothetical protein YP_001998075.1 KEGG: cte:CT0457 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase YP_001998076.1 KEGG: cph:Cpha266_0277 hypothetical protein YP_001998077.1 PFAM: conserved hypothetical protein; KEGG: cte:CT0458 hypothetical protein YP_001998078.1 KEGG: sfu:Sfum_2080 hypothetical protein YP_001998079.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT0462 ubiquinone/menaquinone biosynthesis methyltransferase YP_001998080.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_001998081.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cte:CT0464 membrane fusion protein YP_001998082.1 PFAM: ferrochelatase; KEGG: cph:Cpha266_0481 ferrochelatase YP_001998083.1 PFAM: protein of unknown function DUF88; KEGG: cte:CT0467 hypothetical protein YP_001998084.1 PFAM: Auxin Efflux Carrier; KEGG: cte:CT0468 hypothetical protein YP_001998085.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0484 ABC transporter related YP_001998086.1 PFAM: cobalt transport protein; KEGG: cph:Cpha266_0485 cobalt transport protein YP_001998087.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cph:Cpha266_0486 cobalamin (vitamin B12) biosynthesis CbiM protein YP_001998088.1 KEGG: cte:CT0471 hypothetical protein YP_001998089.1 PFAM: CopG domain protein DNA-binding domain protein; NikR nickel binding; KEGG: cte:CT0472 CopG family transcriptional regulator, nickel-responsive regulator YP_001998090.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_001998091.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cte:CT0474 hydrogenase gamma subunit YP_001998092.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001998093.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_001998094.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: cte:CT0478 segregation and condensation protein B YP_001998095.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cte:CT0479 ribosomal small subunit pseudouridine synthase A YP_001998096.1 KEGG: cte:CT0480 hypothetical protein YP_001998097.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: cte:CT0481 multiple antibiotic resistance protein YP_001998098.1 KEGG: bpd:BURPS668_3039 hypothetical protein YP_001998099.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: cte:CT1715 SUA5/YciO/YrdC family protein YP_001998100.1 PFAM: phosphatidate cytidylyltransferase; KEGG: cte:CT1714 membrane protein YP_001998101.1 PFAM: Ppx/GppA phosphatase; KEGG: cte:CT1713 exopolyphosphatase YP_001998102.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; KEGG: cte:CT1712 para-aminobenzoate synthetase YP_001998103.1 KEGG: cte:CT1711 hypothetical protein YP_001998104.1 KEGG: cte:CT1710 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein YP_001998105.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: cte:CT1709 N utilization substance protein B YP_001998106.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cte:CT1708 hydrolase, haloacid dehalogenase-like family YP_001998107.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: cte:CT1707 Smc family protein YP_001998108.1 KEGG: cte:CT1706 dihydropteroate pyrophosphorylase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_001998109.1 PFAM: peptidase M50; KEGG: cte:CT1705 zinc protease YP_001998110.1 KEGG: cte:CT1704 cytochrome c YP_001998111.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0508 methyltransferase type 12 YP_001998112.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cte:CT1702 hypothetical protein YP_001998113.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1701 iron-sulfur cluster-binding protein YP_001998114.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cte:CT1700 hypothetical protein YP_001998115.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_001998116.1 KEGG: mmw:Mmwyl1_1511 ATP-binding region, ATPase-like protein YP_001998117.1 PFAM: Bile acid:sodium symporter; KEGG: mvn:Mevan_1540 bile acid:sodium symporter YP_001998118.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT1697 BchE/P-methylase family protein YP_001998119.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cte:CT1696 hydrolase, haloacid dehalogenase-like family YP_001998120.1 KEGG: cte:CT1695 sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein YP_001998121.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cph:Cpha266_0514 major facilitator superfamily MFS_1 YP_001998122.1 KEGG: cte:CT1692 hypothetical protein YP_001998123.1 PFAM: protein of unknown function DUF1003; KEGG: plt:Plut_1664 hypothetical protein YP_001998124.1 KEGG: cte:CT1689 excinuclease ABC, subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001998127.1 KEGG: cte:CT1685 hypothetical protein YP_001998128.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; plasma-membrane proton-efflux P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cte:CT1683 proton transporting ATPase, E1-E2 family YP_001998129.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001998130.1 PFAM: inner-membrane translocator; KEGG: cte:CT1681 ABC transporter, permease protein YP_001998131.1 PFAM: ThiJ/PfpI domain protein; KEGG: cte:CT1680 es1 family protein YP_001998132.1 KEGG: cte:CT1679 hypothetical protein YP_001998133.1 KEGG: cte:CT1678 hypothetical protein YP_001998134.1 PFAM: isochorismatase hydrolase; KEGG: cte:CT1677 hydrolase, isochorismatase family YP_001998135.1 KEGG: cte:CT1676 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_001998136.1 PFAM: protein of unknown function DUF374; KEGG: cte:CT1675 hypothetical protein YP_001998137.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001998138.1 PFAM: Mov34/MPN/PAD-1 family protein; KEGG: cte:CT1673 hypothetical protein YP_001998139.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: cte:CT1672 carbamoyl-phosphate synthase, medium subunit YP_001998140.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_001998141.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: cte:CT1670 ribulose-phosphate 3-epimerase YP_001998142.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: cte:CT1669 hypothetical protein YP_001998143.1 KEGG: cte:CT1668 hypothetical protein YP_001998145.1 KEGG: cte:CT1667 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2 YP_001998146.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: cte:CT1666 prephenate dehydratase YP_001998147.1 PFAM: protein of unknown function DUF28; KEGG: cte:CT1665 hypothetical protein YP_001998148.1 KEGG: cte:CT1664 holliday junction resolvase; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_001998149.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cte:CT1663 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001998150.1 catalyzes the zinc dependent deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis and catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP in fatty acid biosynthesis YP_001998151.1 PFAM: inositol monophosphatase; KEGG: cte:CT1661 extragenic suppressor protein SuhB YP_001998152.1 PFAM: TspO/MBR family protein; KEGG: cte:CT1660 CrtK protein YP_001998153.1 KEGG: cte:CT1659 hypothetical protein YP_001998154.1 KEGG: cte:CT1658 hypothetical protein YP_001998155.1 KEGG: cch:Cag_1751 prevent-host-death protein YP_001998156.1 PFAM: plasmid stabilization system; KEGG: cch:Cag_0273 hypothetical protein YP_001998157.1 KEGG: cte:CT1655 ferredoxin, 2Fe-2S YP_001998158.1 PFAM: regulatory protein ArsR; KEGG: cte:CT1654 transcriptional regulator, ArsR family YP_001998159.1 KEGG: cte:CT1653 hypothetical protein YP_001998160.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_001998161.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001998162.1 KEGG: cte:CT1649 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein YP_001998163.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001998164.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT1646 tetrapyrrole methylase family protein YP_001998165.1 KEGG: cte:CT1645 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001998166.1 KEGG: cte:CT1644 protease IV; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_001998167.1 KEGG: cte:CT1641 magnesium-chelatase, subunit D/I family; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001998168.1 KEGG: noc:Noc_1094 hypothetical protein YP_001998169.1 KEGG: lbl:LBL_4255 OmpA-family protein YP_001998170.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: cte:CT1640 phosphoenolpyruvate carboxylase YP_001998171.1 KEGG: cte:CT1639 photosystem P840 reaction center cytochrome c-551 YP_001998172.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_001998173.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1637 hypothetical protein YP_001998174.1 KEGG: cte:CT1636 hypothetical protein YP_001998175.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cte:CT1635 site-specific recombinase, phage/XerD family YP_001998176.1 KEGG: cte:CT1634 hypothetical protein YP_001998177.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_001998178.1 PFAM: extracellular solute-binding protein family 5; KEGG: cte:CT1632 peptide ABC transporter, periplasmic peptide-binding protein YP_001998179.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cte:CT1631 peptide ABC transporter, permease protein YP_001998180.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001998181.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cte:CT1629 TPR domain protein YP_001998182.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cte:CT1628 pyruvate flavodoxin/ferrodoxin oxidoreductase YP_001998183.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cte:CT1627 SpoU rRNA methylase family protein YP_001998184.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_001998185.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_001998186.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001998187.1 PFAM: penicillin-binding protein transpeptidase; KEGG: psa:PST_2699 probable beta-lactamase YP_001998188.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: cte:CT1618 recombination/replication protein RecN YP_001998189.1 KEGG: sru:SRU_1396 hypothetical protein YP_001998190.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: cte:CT1616 Sec-independent protein translocase protein TatE YP_001998191.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001998192.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: cte:CT1614 MesJ protein YP_001998193.1 KEGG: cte:CT1613 hypothetical protein YP_001998194.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_001998195.1 required for 70S ribosome assembly YP_001998196.1 TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cte:CT1610 bacteriochlorophyll a synthase YP_001998197.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001998198.1 PFAM: creatinase; peptidase M24; KEGG: cte:CT1608 aminopeptidase P YP_001998199.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: cte:CT1607 periplasmic divalent cation tolerance protein CutA YP_001998200.1 KEGG: cte:CT0517 tia invasion determinant-related protein YP_001998201.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001998202.1 PFAM: Peptidase M23; KEGG: cph:Cpha266_0808 peptidase M23B YP_001998203.1 KEGG: cte:CT0559 hypothetical protein YP_001998204.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001998205.1 KEGG: cte:CT0561 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_001998206.1 PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex YP_001998207.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001998208.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001998209.1 PFAM: FAD linked oxidase domain protein; KEGG: cte:CT0565 oxidoreductase, FAD-binding YP_001998210.1 KEGG: cte:CT0566 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_001998211.1 TIGRFAM: rod shape-determining protein MreD; KEGG: cte:CT0567 hypothetical protein YP_001998212.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001998213.1 PFAM: chaperonin Cpn10; KEGG: cte:CT0569 chaperonin, 10 kDa YP_001998214.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_001998215.1 KEGG: cte:CT0571 hypothetical protein YP_001998216.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cte:CT0576 NAD(P)-dependent cholesterol dehydrogenase YP_001998218.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001998219.1 KEGG: rme:Rmet_6064 hypothetical protein YP_001998220.1 KEGG: rme:Rmet_6065 hypothetical protein YP_001998221.1 PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_1375 transcriptional regulator, XRE family YP_001998222.1 KEGG: ppf:Pput_1648 hypothetical protein YP_001998223.1 KEGG: cte:CT0589 hypothetical protein YP_001998224.1 KEGG: cte:CT0587 hypothetical protein YP_001998225.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cte:CT0588 cytosine deaminase YP_001998226.1 PFAM: protein of unknown function DUF1105; KEGG: pgi:PG0424 hypothetical protein YP_001998227.1 KEGG: cju:C8J_0191 hypothetical protein YP_001998228.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0590 cell division ATP-binding protein FtsE YP_001998229.1 KEGG: cte:CT0591 pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_001998230.1 KEGG: cte:CT0592 hypothetical protein YP_001998231.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: cte:CT0593 3-deoxy-D-manno-octulosonic-acid transferase YP_001998232.1 PFAM: protein of unknown function DUF101; KEGG: cte:CT0594 hypothetical protein YP_001998233.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: cte:CT0595 hypothetical protein YP_001998234.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cte:CT0597 ATP-dependent RNA helicase DeaD YP_001998235.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: cte:CT0598 metallo-beta-lactamase family protein YP_001998236.1 KEGG: cte:CT0599 hypothetical protein YP_001998237.1 PFAM: PEBP family protein; KEGG: cte:CT0600 hypothetical protein YP_001998238.1 PFAM: protein of unknown function UPF0027; KEGG: cte:CT0601 hypothetical protein YP_001998239.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cte:CT0602 integrase/recombinase XerD YP_001998240.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: cte:CT0603 Sun protein YP_001998241.1 KEGG: cte:CT0604 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001998242.1 KEGG: cte:CT0605 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_001998243.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001998244.1 PFAM: GatB/Yqey domain protein; KEGG: cte:CT0607 hypothetical protein YP_001998245.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cte:CT0609 sepiapterin reductase YP_001998246.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: cte:CT0610 cold shock-like protein CspG YP_001998247.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_001998248.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cte:CT0612 2-isopropylmalate synthase YP_001998249.1 PFAM: aconitate hydratase domain protein; KEGG: cte:CT0613 3-isopropylmalate dehydratase small subunit YP_001998250.1 KEGG: cte:CT0614 3-isopropylmalate dehydratase large subunit; TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein YP_001998251.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001998252.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001998253.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_001998254.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cte:CT0618 acetolactate synthase large subunit YP_001998255.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001998256.1 PFAM: phosphatidate cytidylyltransferase; protein of unknown function DUF92 transmembrane; KEGG: cte:CT0632 membrane protein YP_001998257.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: cte:CT0633 ExbB/TolQ family protein YP_001998258.1 TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cte:CT0634 ExbD/TolR family protein YP_001998259.1 KEGG: cte:CT0635 hypothetical protein YP_001998260.1 TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: WD40 domain protein beta Propeller; KEGG: cte:CT0636 TolB protein YP_001998261.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: cte:CT0638 peptidoglycan-associated lipoprotein YP_001998262.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: cte:CT0638 peptidoglycan-associated lipoprotein YP_001998263.1 TIGRFAM: tol-pal system protein YbgF; KEGG: cte:CT0640 hypothetical protein YP_001998264.1 KEGG: cte:CT0641 photosystem P840 reaction center protein PscD YP_001998265.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001998266.1 PFAM: heat shock protein Hsp20; KEGG: cte:CT0644 heat shock protein, HSP20 family YP_001998267.1 PFAM: regulatory protein ArsR; KEGG: cte:CT0646 transcriptional regulator, ArsR family YP_001998268.1 KEGG: cte:CT0647 hypothetical protein YP_001998269.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_001998270.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cte:CT0649 carotenoid isomerase YP_001998271.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: cph:Cpha266_0875 L-alanine dehydrogenase YP_001998272.1 PFAM: ferredoxin; KEGG: cte:CT0651 chlorosome envelope protein J YP_001998273.1 PFAM: ferredoxin; KEGG: cte:CT0652 chlorosome envelope protein X YP_001998274.1 KEGG: cte:CT0653 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001998275.1 PFAM: Domain of unknown function DUF1883; SMART: TIR protein; KEGG: maq:Maqu_1263 TIR protein YP_001998276.1 KEGG: cte:CT0655 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001998277.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cte:CT0656 DNA-binding response regulator YP_001998278.1 KEGG: cph:Cpha266_0881 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_001998279.1 PFAM: MscS Mechanosensitive ion channel; KEGG: cte:CT0659 hypothetical protein YP_001998280.1 PFAM: NUDIX hydrolase; KEGG: cte:CT0660 NUDIX/MutT family protein YP_001998281.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cte:CT0662 bacterioferritin comigratory protein, thiol peroxidase YP_001998282.1 PFAM: protein of unknown function DUF179; KEGG: cte:CT0663 transcriptional regulator YP_001998283.1 KEGG: cte:CT0686 hypothetical protein YP_001998284.1 PFAM: NUDIX hydrolase; KEGG: cte:CT0687 Nudix family protein, MutT subfamily YP_001998285.1 KEGG: cph:Cpha266_0053 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases YP_001998286.1 KEGG: gfo:GFO_0896 hypothetical protein YP_001998288.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: cte:CT0696 thiamine biosynthesis protein ThiF YP_001998289.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center YP_001998290.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_001998291.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: cte:CT0699 ThiS protein YP_001998292.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cte:CT0700 cysteine synthase YP_001998293.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cte:CT0701 trans-sulfuration enzyme family protein YP_001998294.1 KEGG: plt:Plut_1546 hypothetical protein YP_001998295.1 PFAM: protein of unknown function DUF45; KEGG: cte:CT0704 zinc protease YP_001998296.1 KEGG: cte:CT0705 hypothetical protein YP_001998297.1 KEGG: cte:CT0706 alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein YP_001998298.1 PFAM: protein of unknown function DUF296; KEGG: cte:CT0707 hypothetical protein YP_001998299.1 PFAM: TspO/MBR family protein; KEGG: cte:CT0708 CrtK protein YP_001998300.1 KEGG: cte:CT0709 hypothetical protein YP_001998301.1 KEGG: cte:CT0710 hypothetical protein YP_001998302.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: cte:CT0714 sulfate transporter family protein YP_001998303.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: cte:CT0716 glutathione-regulated potassium-efflux system protein KefC YP_001998304.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT0717 epoxide hydrolase YP_001998305.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: cte:CT0718 N-(5'-phosphoribosyl)-anthranilate isomerase YP_001998306.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: cte:CT0719 methylenetetrahydrofolate dehydrogenase YP_001998307.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: cte:CT0720 serine cycle enzyme YP_001998308.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_001998309.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001998310.1 PFAM: metallophosphoesterase; KEGG: cte:CT0725 hypothetical protein YP_001998311.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: cte:CT0726 HNH endonuclease family protein YP_001998312.1 PFAM: Nucleotidyl transferase; KEGG: cte:CT0727 glucose-1-phosphate thymidylyltransferase YP_001998313.1 PFAM: NUDIX hydrolase; KEGG: cte:CT0729 NUDIX/MutT family protein YP_001998314.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pvi:Cvib_1118 efflux transporter, RND family, MFP subunit YP_001998315.1 PFAM: acriflavin resistance protein; KEGG: plt:Plut_0709 RND family efflux transporter YP_001998316.1 PFAM: outer membrane efflux protein; KEGG: pvi:Cvib_1116 outer membrane efflux protein YP_001998317.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001998318.1 KEGG: cte:CT0731 hypothetical protein YP_001998319.1 KEGG: cte:CT0732 hypothetical protein YP_001998320.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_001998321.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001998322.1 KEGG: cte:CT0736 hypothetical protein YP_001998323.1 TIGRFAM: preprotein translocase, SecG subunit; KEGG: cte:CT0737 preprotein translocase SecG subunit YP_001998324.1 PFAM: ribonuclease II; KEGG: cte:CT1000 ribonuclease II family protein YP_001998325.1 PFAM: protein of unknown function DUF975; KEGG: cph:Cpha266_2146 hypothetical protein YP_001998326.1 PFAM: permease YjgP/YjgQ family protein; KEGG: cte:CT0740 hypothetical protein YP_001998327.1 PFAM: thioesterase superfamily protein; KEGG: cte:CT0744 cytosolic long-chain acyl-CoA thioester hydrolase family protein YP_001998328.1 PFAM: protein of unknown function DUF814; KEGG: cte:CT0745 fibronectin-binding protein YP_001998329.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cte:CT0746 deoxycytidylate deaminase YP_001998330.1 KEGG: cte:CT0747 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein YP_001998331.1 PFAM: DoxX family protein; KEGG: cte:CT0748 hypothetical protein YP_001998332.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1303 ABC transporter, ATP-binding protein YP_001998333.1 PFAM: DNA alkylation repair enzyme; KEGG: cte:CT1302 hypothetical protein YP_001998334.1 KEGG: cph:Cpha266_0794 hypothetical protein YP_001998335.1 KEGG: cch:Cag_1038 hypothetical protein YP_001998336.1 KEGG: cte:CT1257 hypothetical protein YP_001998337.1 KEGG: plt:Plut_0890 hypothetical protein YP_001998338.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT1903 BchE/P-methylase family protein YP_001998339.1 PFAM: cyclase/dehydrase; KEGG: pvi:Cvib_1584 cyclase/dehydrase YP_001998340.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: cte:CT1301 prolyl oligopeptidase family protein YP_001998341.1 PFAM: NADPH-dependent FMN reductase; KEGG: cte:CT1300 hypothetical protein YP_001998342.1 KEGG: cte:CT1299 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001998343.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; KEGG: cte:CT1298 dihydrolipoamide dehydrogenase YP_001998344.1 KEGG: cte:CT1297 magnesium-chelatase, subunit I; TIGRFAM: magnesium chelatase ATPase subunit I; SMART: AAA ATPase YP_001998345.1 KEGG: cte:CT1296 magnesium-chelatase, subunit D; TIGRFAM: magnesium chelatase ATPase subunit D; PFAM: magnesium chelatase ChlI subunit; von Willebrand factor type A; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001998347.1 KEGG: cte:CT1295 magnesium-protoporphyrin methyltransferase; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase YP_001998348.1 PFAM: protein of unknown function DUF1615; KEGG: cte:CT1294 hypothetical protein YP_001998349.1 KEGG: cte:CT1293 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_001998350.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001998351.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001998352.1 KEGG: cte:CT1429 hypothetical protein YP_001998353.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: cte:CT1428 uroporphyrinogen-III synthase YP_001998354.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001998355.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_001998356.1 PFAM: cytochrome c assembly protein; KEGG: cte:CT1425 HemX protein YP_001998357.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cte:CT1424 GTP-binding elongation factor family protein, TypA subfamily YP_001998358.1 KEGG: cte:CT1423 chlorophyllide reductase, BchX subunit; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; Sigma-70 region 4 type 2 YP_001998359.1 TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cte:CT1422 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase YP_001998360.1 PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: cte:CT1421 2-vinyl bacteriochlorophyllide hydratase YP_001998361.1 KEGG: mbn:Mboo_0912 hypothetical protein YP_001998362.1 PFAM: extracellular solute-binding protein family 5; KEGG: cte:CT1420 peptide ABC transporter, periplasmic peptide-binding protein YP_001998363.1 PFAM: LmbE family protein; KEGG: cte:CT1419 hypothetical protein YP_001998364.1 KEGG: cte:CT1418 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_001998365.1 TIGRFAM: chlorosome envelope protein H; KEGG: cte:CT1417 chlorosome envelope protein H YP_001998366.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT1416 glycosyl transferase YP_001998367.1 KEGG: cte:CT1415 hypothetical protein YP_001998368.1 PFAM: amine oxidase; KEGG: cte:CT1414 zeta-carotene desaturase YP_001998369.1 KEGG: cte:CT1413 hypothetical protein YP_001998370.1 PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; regulatory protein Crp; KEGG: cte:CT1412 transcriptional regulator, AsnC family YP_001998371.1 PFAM: glutamine synthetase catalytic region; KEGG: cte:CT1411 glutamine synthetase YP_001998372.1 PFAM: protein of unknown function UPF0047; KEGG: cte:CT1410 hypothetical protein YP_001998373.1 KEGG: cte:CT1409 hypothetical protein YP_001998374.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_001998375.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_001998376.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_001998377.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_001998378.1 TIGRFAM: helicase, RecD/TraA family; KEGG: cte:CT1402 exodeoxyribonuclease V, alpha subunit YP_001998379.1 KEGG: cte:CT1401 hypothetical protein YP_001998380.1 KEGG: cte:CT1400 hypothetical protein YP_001998381.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rsq:Rsph17025_2416 hypothetical protein YP_001998383.1 KEGG: cte:CT1398 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001998384.1 KEGG: cte:CT1397 tRNA-guanine transglycosylase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_001998385.1 KEGG: cte:CT1396 sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001998386.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: cch:Cag_1185 transglutaminase-like YP_001998387.1 PFAM: protein of unknown function DUF403; KEGG: cch:Cag_1184 hypothetical protein YP_001998388.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: cph:Cpha266_1742 protein of unknown function DUF404 YP_001998389.1 PFAM: AAA-4 family protein; KEGG: cph:Cpha266_1740 transcriptional regulator YP_001998390.1 PFAM: CBS domain containing protein; Chloride channel core; KEGG: cte:CT1391 chloride channel YP_001998391.1 KEGG: cte:CT1389 hypothetical protein YP_001998392.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_001998393.1 PFAM: Squalene/phytoene synthase; KEGG: cte:CT1386 phytoene desaturase YP_001998394.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: cte:CT1384 GTP-binding protein HflX YP_001998395.1 PFAM: protein of unknown function UPF0054; KEGG: cte:CT1383 hypothetical protein YP_001998396.1 PFAM: ferredoxin; KEGG: cte:CT1382 chlorosome envelope protein I YP_001998397.1 KEGG: cph:Cpha266_1731 hypothetical protein YP_001998398.1 PFAM: aminotransferase class I and II; KEGG: cte:CT1381 aspartate aminotransferase YP_001998399.1 KEGG: cte:CT1379 hypothetical protein YP_001998400.1 KEGG: plt:Plut_1351 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001998401.1 PFAM: protein of unknown function DUF164; KEGG: cte:CT1375 hypothetical protein YP_001998402.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001998403.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cte:CT1371 diaminopimelate decarboxylase YP_001998404.1 PFAM: protein of unknown function DUF52; KEGG: cte:CT1369 hypothetical protein YP_001998406.1 KEGG: cte:CT1368 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_001998407.1 PFAM: ComEC/Rec2-related protein; KEGG: cte:CT1367 ComEC/Rec2 family protein YP_001998408.1 KEGG: cte:CT1366 hypothetical protein YP_001998409.1 PFAM: NUDIX hydrolase; KEGG: cte:CT1365 NUDIX/MutT family protein YP_001998410.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cte:CT1364 peptide ABC transporter, permease protein YP_001998411.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001998412.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_001998413.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: cte:CT1360 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase YP_001998414.1 PFAM: protein of unknown function DUF547; glycoside hydrolase 15-related; KEGG: gbe:GbCGDNIH1_1316 glucoamylase YP_001998415.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: cte:CT1358 sensor histidine kinase/response regulator YP_001998416.1 PFAM: amine oxidase; KEGG: cte:CT1357 hypothetical protein YP_001998417.1 KEGG: cte:CT1356 hypothetical protein YP_001998418.1 KEGG: cte:CT1354 hypothetical protein YP_001998419.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: cte:CT1353 OmpA family protein YP_001998420.1 KEGG: cte:CT1352 hypothetical protein YP_001998421.1 PFAM: protein of unknown function DUF214; KEGG: cte:CT1351 ABC transporter efflux protein YP_001998422.1 PFAM: protein of unknown function DUF214; KEGG: cte:CT1350 ABC transporter efflux protein YP_001998423.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1349 ABC transporter, ATP-binding protein YP_001998424.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cte:CT1348 membrane fusion efflux protein YP_001998425.1 PFAM: outer membrane efflux protein; KEGG: cte:CT1347 outer membrane efflux protein YP_001998426.1 SMART: Tetratricopeptide domain protein; KEGG: cte:CT1346 hypothetical protein YP_001998427.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001998428.1 PFAM: CoA-binding domain protein; KEGG: cte:CT1344 hypothetical protein YP_001998429.1 PFAM: Alkaline phosphatase; SMART: Dystroglycan-type cadherin domain protein; KEGG: cch:Cag_0406 alkaline phosphatase YP_001998430.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: cte:CT1342 lipoate-protein ligase A YP_001998431.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_001998432.1 TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cte:CT1340 CDP-diacylglycerol-serine O-phosphatidyltransferase YP_001998433.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: cte:CT1339 hypothetical protein YP_001998434.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001998435.1 PFAM: major facilitator superfamily MFS_1; KEGG: cte:CT1337 MFS transporter family protein YP_001998436.1 PFAM: Protein of unknown function DUF1847; KEGG: cte:CT1336 hypothetical protein YP_001998437.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mgm:Mmc1_1218 GCN5-related N-acetyltransferase YP_001998438.1 PFAM: UbiE/COQ5 methyltransferase; Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: mtp:Mthe_1530 methyltransferase type 11 YP_001998439.1 PFAM: peptidase S14 ClpP; protein of unknown function DUF107; KEGG: cte:CT0795 NfeD protein YP_001998440.1 PFAM: band 7 protein; KEGG: cte:CT0796 band 7 family protein YP_001998441.1 PFAM: UspA domain protein; KEGG: cte:CT0797 universal stress protein family YP_001998442.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins YP_001998443.1 MDM; functions in conversion of succinate to propionate YP_001998444.1 PFAM: methylmalonyl-CoA mutase; KEGG: cph:Cpha266_1165 methylmalonyl-CoA mutase YP_001998445.1 KEGG: cph:Cpha266_1166 acetyl-CoA carboxylase alpha subunit-like YP_001998446.1 TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cph:Cpha266_1167 methylmalonyl-CoA epimerase YP_001998447.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cph:Cpha266_1168 AMP-dependent synthetase and ligase YP_001998448.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001998449.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: cte:CT0804 transketolase, C-terminal subunit YP_001998450.1 PFAM: conserved hypothetical protein; KEGG: cte:CT0805 hypothetical protein YP_001998451.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001998452.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cte:CT0807 phytoene desaturase YP_001998453.1 KEGG: cch:Cag_0740 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase YP_001998454.1 KEGG: cph:Cpha266_1748 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase YP_001998455.1 PFAM: secretion protein HlyD family protein; KEGG: cch:Cag_0743 metalloprotease secretion protein YP_001998456.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1746 type I secretion outer membrane protein, TolC family YP_001998457.1 KEGG: cte:CT0811 hypothetical protein YP_001998458.1 PFAM: permease; KEGG: cte:CT0813 hypothetical protein YP_001998459.1 KEGG: cte:CT0814 hypothetical protein YP_001998460.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: cte:CT0815 copper-transporting ATPase, E1-E2 family YP_001998461.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; KEGG: cte:CT0818 peptide chain release factor 3 YP_001998462.1 PFAM: protein of unknown function DUF849; KEGG: cch:Cag_0981 hypothetical protein YP_001998463.1 KEGG: pca:Pcar_1368 hypothetical protein YP_001998464.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: cte:CT0822 sodium:alanine symporter family protein YP_001998465.1 PFAM: Inorganic pyrophosphatase; KEGG: pvi:Cvib_1028 inorganic diphosphatase YP_001998466.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: cte:CT0824 hypothetical protein YP_001998467.1 PFAM: N-acetylneuraminic acid synthase domain; KEGG: cte:CT0825 sialic acid synthase YP_001998468.1 molecular chaperone YP_001998469.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: cte:CT0830 hypothetical protein YP_001998470.1 KEGG: cte:CT0831 hypothetical protein YP_001998471.1 PFAM: UspA domain protein; KEGG: pvi:Cvib_1021 UspA domain protein YP_001998472.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: cte:CT0833 fumarate hydratase, class I YP_001998473.1 PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; KEGG: cte:CT0834 oxaloacetate decarboxylase, alpha subunit YP_001998474.1 PFAM: Radical SAM domain protein; KEGG: cth:Cthe_2551 radical SAM YP_001998475.1 KEGG: cph:Cpha266_0290 hypothetical protein YP_001998476.1 KEGG: cph:Cpha266_0289 hypothetical protein YP_001998477.1 KEGG: cte:CT0836 internalin-related protein YP_001998478.1 PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: cte:CT0838 glycosyl hydrolase, family 65 YP_001998479.1 PFAM: glycosyl transferase group 1; KEGG: cte:CT0839 glycosyl transferase, group 1 family protein YP_001998480.1 KEGG: cte:CT0840 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_001998481.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cte:CT0841 thioredoxin YP_001998482.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cte:CT0842 thioredoxin reductase YP_001998483.1 KEGG: plt:Plut_1143 anthranilate phosphoribosyl transferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like YP_001998484.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pvi:Cvib_0810 alcohol dehydrogenase GroES domain protein YP_001998485.1 KEGG: amr:AM1_0066 hypothetical protein YP_001998487.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: cte:CT0874 hypothetical protein YP_001998488.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cte:CT0876 sulfide-quinone reductase YP_001998489.1 TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: sus:Acid_4382 protoheme IX farnesyltransferase YP_001998490.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: eca:ECA1143 cytochrome o ubiquinol oxidase subunit II YP_001998491.1 KEGG: mes:Meso_3535 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_001998492.1 TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: aha:AHA_2944 cytochrome o ubiquinol oxidase subunit III YP_001998493.1 TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: reu:Reut_A0985 prokaryotic cytochrome c oxidase subunit IV YP_001998496.1 PFAM: UspA domain protein; KEGG: gsu:GSU1118 universal stress protein family YP_001998497.1 PFAM: conserved hypothetical protein; KEGG: ppd:Ppro_2179 conserved hypothetical protein 698 YP_001998498.1 KEGG: plt:Plut_1256 hypothetical protein YP_001998499.1 PFAM: NUDIX hydrolase; KEGG: plt:Plut_1259 hypothetical protein YP_001998500.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: ana:all3141 AAA superfamily ATPase YP_001998501.1 KEGG: sde:Sde_1050 hypothetical protein YP_001998502.1 KEGG: ana:all3313 unknown protein YP_001998504.1 KEGG: fjo:Fjoh_3160 hypothetical protein YP_001998505.1 KEGG: ana:all3315 unknown protein YP_001998506.1 KEGG: ana:all3317 unknown protein YP_001998507.1 PFAM: GPW/gp25 family protein; KEGG: fjo:Fjoh_3157 gpW/GP25 family protein YP_001998508.1 PFAM: PAAR repeat-containing protein; KEGG: mfa:Mfla_1039 PaaR YP_001998509.1 PFAM: Rhs element Vgr protein; KEGG: fjo:Fjoh_3155 rhs element Vgr protein YP_001998510.1 KEGG: fjo:Fjoh_3154 hypothetical protein YP_001998511.1 KEGG: fjo:Fjoh_3153 hypothetical protein YP_001998512.1 TIGRFAM: conserved hypothetical phage tail protein; PFAM: conserved hypothetical protein; KEGG: fjo:Fjoh_3152 conserved hypothetical phage tail protein YP_001998513.1 TIGRFAM: conserved hypothetical phage tail protein; PFAM: conserved hypothetical protein; KEGG: ana:all3324 hypothetical protein YP_001998514.1 KEGG: dar:Daro_3614 phage tail sheath protein FI YP_001998515.1 KEGG: fjo:Fjoh_3149 hypothetical protein YP_001998516.1 KEGG: ana:all3327 unknown protein YP_001998517.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cte:CT0879 tRNA methyltransferase SpoU YP_001998518.1 KEGG: cte:CT0880 hypothetical protein YP_001998519.1 PFAM: metallophosphoesterase; KEGG: plt:Plut_1253 hypothetical protein YP_001998520.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cte:CT0883 ATPase, ParA family YP_001998521.1 PFAM: CHAD domain containing protein; KEGG: cte:CT0884 hypothetical protein YP_001998522.1 KEGG: cte:CT0885 hypothetical protein YP_001998523.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_001998524.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cte:CT0889 phosphoglycolate phosphatase YP_001998525.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pvi:Cvib_1002 phospholipid/glycerol acyltransferase YP_001998526.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pvi:Cvib_1001 hypothetical protein YP_001998527.1 KEGG: plt:Plut_1247 hypothetical protein YP_001998528.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pvi:Cvib_0998 phosphate binding protein YP_001998530.1 TIGRFAM: phosphate binding protein; KEGG: cph:Cpha266_1038 phosphate binding protein YP_001998531.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pvi:Cvib_0996 phosphate ABC transporter, inner membrane subunit PstC YP_001998532.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: plt:Plut_1243 phosphate transport system permease protein 2 YP_001998533.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_001998534.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: cte:CT0900 phosphate transport system regulatory protein YP_001998535.1 KEGG: cte:CT0902 hypothetical protein YP_001998536.1 KEGG: cte:CT0903 transcriptional regulator YP_001998537.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1044 efflux transporter, RND family, MFP subunit YP_001998538.1 PFAM: acriflavin resistance protein; KEGG: cph:Cpha266_1045 acriflavin resistance protein YP_001998539.1 KEGG: cte:CT0916 hypothetical protein YP_001998540.1 KEGG: cte:CT0917 hypothetical protein YP_001998541.1 PFAM: pentapeptide repeat protein; KEGG: cte:CT0918 pentapeptide repeat family protein YP_001998542.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT0919 glycosyl transferase YP_001998544.1 KEGG: cph:Cpha266_1051 hypothetical protein YP_001998545.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; calcium-translocating P-type ATPase, PMCA-type; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cph:Cpha266_0173 ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_001998546.1 KEGG: cte:CT0924 hypothetical protein YP_001998547.1 KEGG: cte:CT1228 UDP-N-acetylenolpyruvoylglucosamine reductase, TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_001998548.1 KEGG: cre:CHLREDRAFT_196816 glyoxal or galactose oxidase Pfam: Glyoxal_oxid_N DUF1929 PROSITE: PRO_RICH SER_RICH YP_001998549.1 KEGG: tel:tll1020 unknown protein YP_001998553.1 KEGG: bur:Bcep18194_C6770 hypothetical protein YP_001998554.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cte:CT1250 hydrogenase/sulfur reductase, gamma subunit YP_001998555.1 KEGG: cte:CT1249 hydrogenase/sulfur reductase, beta subunit YP_001998556.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1248 hydrogenase, iron-sulfur binding protein YP_001998557.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: cte:CT1247 hydrogenase, methyl-violgen-reducing type, delta subunit YP_001998558.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: cte:CT1246 heterodisulfide reductase, subunit A YP_001998559.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: cte:CT1245 heterodisulfide reductase, subunit C/succinate dehydrogenase, subunit C YP_001998560.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_001998561.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001998562.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: cte:CT1241 YjeF family protein YP_001998563.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001998564.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_001998565.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: cte:CT0995 hypothetical protein YP_001998566.1 PFAM: HhH-GPD family protein; 8-oxoguanine DNA glycosylase domain protein; KEGG: cte:CT0996 8-oxoguanine DNA glycosylase YP_001998567.1 PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: dde:Dde_2499 DEAD/DEAH box helicase-like YP_001998568.1 PFAM: N-6 DNA methylase; KEGG: dde:Dde_2498 type I restriction-modification system, M subunit YP_001998569.1 PFAM: restriction modification system DNA specificity domain; KEGG: noc:Noc_3030 restriction modification system DNA specificity domain YP_001998570.1 KEGG: dde:Dde_2495 hypothetical protein YP_001998571.1 KEGG: azo:azo3704 hypothetical membrane protein YP_001998572.1 PFAM: Abortive infection protein; KEGG: plt:Plut_0757 abortive infection protein-like YP_001998573.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: pvi:Cvib_1294 alkylphosphonate utilization operon protein PhnA YP_001998574.1 KEGG: cte:CT1002 hypothetical protein YP_001998575.1 KEGG: cph:Cpha266_1686 hypothetical protein YP_001998576.1 KEGG: cte:CT1035 hypothetical protein YP_001998577.1 PFAM: basic membrane lipoprotein; KEGG: cte:CT1036 basic membrane protein A YP_001998578.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cte:CT1037 3-beta hydroxysteroid dehydrogenase/isomerase family protein YP_001998579.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase KEGG: cte:CT1038 CBS domain protein YP_001998580.1 KEGG: cte:CT1039 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_001998581.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1040 methyltransferase YP_001998582.1 KEGG: cte:CT1041 hypothetical protein YP_001998583.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_001998584.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: cte:CT1043 fumarylacetoacetate hydrolase family protein YP_001998585.1 KEGG: cte:CT1046 chlorosome envelope protein F YP_001998586.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cte:CT1048 5-formyltetrahydrofolate cyclo-ligase YP_001998587.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_001998588.1 KEGG: cte:CT1050 ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase YP_001998589.1 PFAM: CBS domain containing protein; KEGG: cte:CT1051 hypothetical protein YP_001998590.1 KEGG: cte:CT1052 peptidase, M20/M25/M40 family; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001998591.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_001998592.1 KEGG: cte:CT1054 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001998593.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001998594.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_001998595.1 PFAM: arginine repressor; KEGG: cte:CT1113 arginine repressor YP_001998596.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_001998597.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_001998598.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_001998599.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_001998600.1 KEGG: cte:CT1106 phosphate-binding protein YP_001998601.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cte:CT1105 GGDEF domain protein YP_001998602.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pin:Ping_1734 MscS mechanosensitive ion channel YP_001998603.1 PFAM: protein of unknown function DUF214; KEGG: cte:CT1103 conserved hypothetical protein YP_001998604.1 PFAM: protein of unknown function DUF214; KEGG: cte:CT1102 probable ABC transporter permease protein YP_001998606.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cte:CT1101 rubredoxin YP_001998607.1 PFAM: GCN5-related N-acetyltransferase; Rubredoxin-type Fe(Cys)4 protein; KEGG: cte:CT1099 acetyltransferase, GNAT family YP_001998608.1 PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: cte:CT1096 outer membrane lipoprotein Blc YP_001998609.1 PFAM: protein of unknown function UPF0016; KEGG: cte:CT1095 hypothetical protein YP_001998610.1 KEGG: cte:CT1094 hypothetical protein YP_001998611.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1092 ABC transporter, ATP-binding protein YP_001998612.1 PFAM: conserved hypothetical protein; KEGG: cte:CT1091 conserved hypothetical protein YP_001998613.1 KEGG: ppd:Ppro_2572 hypothetical protein YP_001998614.1 KEGG: ppd:Ppro_2573 hypothetical protein YP_001998615.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001998616.1 PFAM: ATP-grasp domain protein; KEGG: cte:CT1089 citrate lyase, subunit 1 YP_001998617.1 PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: cte:CT1088 citrate lyase, subunit 2 YP_001998618.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cte:CT1087 sulfide-quinone reductase YP_001998619.1 catalyzes the formation of acetyl phosphate from acetyl-CoA and phosphate; can also act with other short-chain acyl-CoAs YP_001998620.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: fjo:Fjoh_2885 transcriptional regulator, LysR family YP_001998621.1 KEGG: cph:Cpha266_1680 Pep581 peptidase. Metallo peptidase. MEROPS family M20C; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001998622.1 KEGG: cte:CT1059 hypothetical protein YP_001998623.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_001998624.1 PFAM: cyclase/dehydrase; KEGG: cte:CT1061 hypothetical protein YP_001998625.1 PFAM: protein of unknown function DUF1634; KEGG: cte:CT0743 hypothetical protein YP_001998626.1 PFAM: protein of unknown function DUF81; KEGG: cte:CT0742 hypothetical protein YP_001998627.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cph:Cpha266_1072 GCN5-related N-acetyltransferase YP_001998628.1 PFAM: MscS Mechanosensitive ion channel; KEGG: syp:SYNPCC7002_A2163 small-conductance mechanosensitive channel YP_001998629.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: cte:CT1063 hypothetical protein YP_001998630.1 PFAM: conserved hypothetical protein; KEGG: cte:CT1064 hypothetical protein YP_001998631.1 KEGG: cch:Cag_0867 hypothetical protein YP_001998632.1 KEGG: cph:Cpha266_1359 hypothetical protein YP_001998633.1 TIGRFAM: yecA family protein; KEGG: cte:CT1066 hypothetical protein YP_001998634.1 KEGG: plt:Plut_1000 hypothetical protein YP_001998635.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: cte:CT1068 exodeoxyribonuclease V, gamma subunit YP_001998636.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: cte:CT1069 exodeoxyribonuclease V, beta subunit YP_001998637.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: cte:CT1070 exodeoxyribonuclease V, alpha subunit YP_001998638.1 KEGG: cph:Cpha266_1139 hypothetical protein YP_001998639.1 PFAM: HNH endonuclease; KEGG: rfr:Rfer_1191 HNH endonuclease YP_001998640.1 KEGG: neu:NE0165 hypothetical protein YP_001998641.1 KEGG: amr:AM1_0080 hypothetical protein YP_001998642.1 PFAM: RNP-1 like RNA-binding protein; KEGG: cch:Cag_1551 RNA-binding region RNP-1 (RNA recognition motif) YP_001998643.1 KEGG: pin:Ping_1761 hypothetical protein YP_001998644.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: cte:CT1072 thiol:disulfide interchange protein DsbE YP_001998645.1 KEGG: plt:Plut_1571 lipoprotein YP_001998646.1 KEGG: cte:CT1073 hypothetical protein YP_001998647.1 PFAM: ApbE family lipoprotein; KEGG: cte:CT1074 ApbE family protein YP_001998648.1 PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: cte:CT1075 thiol:disulfide interchange protein DsbD YP_001998650.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: cte:CT1076 hypothetical protein YP_001998651.1 KEGG: cte:CT1077 hypothetical protein YP_001998652.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001998653.1 KEGG: cte:CT1080 hypothetical protein YP_001998654.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: cph:Cpha266_1350 cupin 2, conserved barrel domain protein YP_001998655.1 KEGG: pvi:Cvib_0859 ABC transport system, lipoprotein YP_001998656.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_1081 ATPase YP_001998657.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_0861 ABC transporter related YP_001998658.1 PFAM: ABC-2 type transporter; KEGG: pvi:Cvib_0862 ABC-2 type transporter YP_001998659.1 PFAM: ABC-2 type transporter; KEGG: pvi:Cvib_0863 ABC-2 type transporter YP_001998660.1 KEGG: hne:HNE_0284 hypothetical protein YP_001998661.1 KEGG: bth:BT_2244 hypothetical protein YP_001998662.1 KEGG: plt:Plut_0935 hypothetical protein YP_001998663.1 KEGG: pvi:Cvib_0760 cytochrome c family protein YP_001998664.1 PFAM: cytochrome B561; KEGG: plt:Plut_1198 hydrogenase, b-type cytochrome subunit YP_001998665.1 PFAM: protein of unknown function DUF344; KEGG: cte:CT1082 hypothetical protein YP_001998666.1 PFAM: NmrA family protein; KEGG: cte:CT1084 hypothetical protein YP_001998667.1 KEGG: cte:CT1009 hypothetical protein YP_001998668.1 PFAM: Silent information regulator protein Sir2; KEGG: pcl:Pcal_1963 NAD-dependent deacetylase YP_001998669.1 KEGG: cte:CT1007 hypothetical protein YP_001998670.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: plt:Plut_1991 potassium channel protein YP_001998671.1 PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: tma:TM0423 glycerol dehydrogenase YP_001998672.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001998673.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_001998674.1 TIGRFAM: F0F1-ATPase subunit; PFAM: F0F1-ATPase subunit KEGG: cte:CT1031 ATP synthase YP_001998675.1 TIGRFAM: F1/F0 ATPase, Methanosarcina type, subunit 2; KEGG: cte:CT1030 hypothetical protein YP_001998676.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_001998677.1 TIGRFAM: ATP synthase F0, C subunit; alternate F1F0 ATPase, F0 subunit C; PFAM: H+transporting two-sector ATPase C subunit; KEGG: mmw:Mmwyl1_1959 ATP synthase F0, C subunit YP_001998678.1 TIGRFAM: ATP synthase F0, B subunit; alternate F1F0 ATPase, F0 subunit B; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: mac:MA2435 H(+)-transporting ATP synthase, subunit B YP_001998679.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001998680.1 TIGRFAM: alternate F1F0 ATPase, F1 subunit gamma; PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: rfr:Rfer_1169 H+-transporting two-sector ATPase, gamma subunit YP_001998681.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cte:CT1034 ATP-dependent RNA helicase DeaD YP_001998682.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cte:CT1025 sulfide dehydrogenase, flavoprotein subunit YP_001998683.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pvi:Cvib_0142 redoxin domain protein YP_001998684.1 PFAM: 5'-Nucleotidase domain protein; KEGG: pvi:Cvib_0143 sulfate thiol esterase SoxB YP_001998685.1 KEGG: cte:CT1020 hypothetical protein YP_001998686.1 KEGG: pvi:Cvib_0145 diheme cytochrome SoxA (sulfur oxidation) YP_001998687.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: pvi:Cvib_0146 sulfur oxidation protein SoxZ YP_001998688.1 KEGG: pvi:Cvib_0147 thiosulfate-binding protein SoxY YP_001998689.1 KEGG: pvi:Cvib_0148 monoheme cytochrome SoxX (sulfur oxidation) YP_001998690.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: pvi:Cvib_0149 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit YP_001998691.1 KEGG: pvi:Cvib_0150 hypothetical protein YP_001998692.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cph:Cpha266_1977 NADH:flavin oxidoreductase/NADH oxidase YP_001998693.1 PFAM: FAD linked oxidase domain protein; KEGG: cte:CT1139 oxidoreductase, FAD-binding YP_001998694.1 KEGG: cte:CT1142 hypothetical protein YP_001998695.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cte:CT1143 oxidoreductase, short-chain dehydrogenase/reductase family YP_001998696.1 PFAM: UspA domain protein; sodium/hydrogen exchanger; KEGG: cte:CT1144 Na+/H+ antiporter YP_001998697.1 PFAM: NLP/P60 protein; KEGG: cte:CT1145 NLP/P60 family protein YP_001998698.1 PFAM: protein of unknown function DUF218; KEGG: cte:CT1146 hypothetical protein YP_001998699.1 PFAM: SMC domain protein; KEGG: cte:CT1147 exonuclease SbcC YP_001998700.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: cte:CT1148 exonuclease SbcD YP_001998701.1 PFAM: protein of unknown function DUF195; KEGG: cte:CT1149 hypothetical protein YP_001998702.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: TIR protein; Tetratricopeptide domain protein; KEGG: scl:sce3803 ATP/GTP-binding protein YP_001998703.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1150 nitroreductase family protein YP_001998704.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cte:CT1151 DegT/DnrJ/EryC1/StrS family protein YP_001998705.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cte:CT1152 alcohol dehydrogenase, iron-containing YP_001998706.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: cte:CT1153 acylneuraminate cytidylyltransferase YP_001998707.1 KEGG: cte:CT1154 hypothetical protein YP_001998708.1 KEGG: cte:CT1155 hypothetical protein YP_001998709.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cte:CT1156 long-chain fatty-acid-CoA ligase YP_001998710.1 KEGG: net:Neut_1367 hypothetical protein YP_001998713.1 PFAM: HhH-GPD family protein; KEGG: cte:CT1162 A/G-specific adenine glycosylase YP_001998714.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001998715.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001998716.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: cte:CT1165 16S rRNA processing protein RimM YP_001998717.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001998718.1 KEGG: cte:CT1167 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001998719.1 TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: cte:CT1168 carbohydrate kinase, PfkB family YP_001998720.1 KEGG: cte:CT1169 hypothetical protein YP_001998721.1 PFAM: cyclase/dehydrase; KEGG: cte:CT1170 hypothetical protein YP_001998722.1 KEGG: cte:CT1171 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001998723.1 PFAM: Endoribonuclease L-PSP; KEGG: cte:CT1173 hypothetical protein YP_001998724.1 PFAM: thiamine monophosphate synthase; KEGG: cte:CT1174 thiamine-phosphate pyrophosphorylase YP_001998725.1 KEGG: cte:CT1175 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_001998726.1 KEGG: cte:CT1176 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_001998727.1 KEGG: cph:Cpha266_1536 hypothetical protein YP_001998728.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_001998729.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cte:CT1181 Dhh family protein YP_001998730.1 KEGG: cte:CT1182 hypothetical protein YP_001998731.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_001998732.1 KEGG: cte:CT1184 hypothetical protein YP_001998733.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001998734.1 KEGG: cte:CT1187 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001998735.1 PFAM: DoxX family protein; KEGG: cte:CT1188 hypothetical protein YP_001998736.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001998737.1 heat shock protein involved in degradation of misfolded proteins YP_001998738.1 heat shock protein involved in degradation of misfolded proteins YP_001998739.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: cte:CT1193 RNA polymerase sigma-54 factor YP_001998740.1 KEGG: cte:CT1194 hypothetical protein YP_001998741.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001998742.1 PFAM: membrane protein of unknown function; KEGG: cte:CT1196 hypothetical protein YP_001998743.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: cte:CT1197 chlorobiumquinone synthase BchC related protein YP_001998744.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1498 ATPase YP_001998745.1 PFAM: inner-membrane translocator; KEGG: cte:CT1199 membrane protein YP_001998746.1 KEGG: cte:CT1201 hypothetical protein YP_001998747.1 KEGG: cte:CT1202 hypothetical protein YP_001998748.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1203 hypothetical protein YP_001998749.1 KEGG: gfo:GFO_0344 secreted protein YP_001998750.1 PFAM: sodium/calcium exchanger membrane region; KEGG: cph:Cpha266_1207 Na+/Ca+ antiporter, CaCA family YP_001998751.1 PFAM: PASTA domain containing protein; KEGG: cte:CT1205 hypothetical protein YP_001998752.1 PFAM: Polyprenyl synthetase; KEGG: cte:CT1206 polyprenyl synthetase YP_001998753.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: cte:CT1207 Sec-independent protein translocase protein TatC YP_001998754.1 PFAM: esterase; KEGG: cte:CT1208 enterochelin esterase and related enzymes YP_001998755.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_001998756.1 KEGG: cte:CT1210 hypothetical protein YP_001998757.1 PFAM: manganese and iron superoxide dismutase; KEGG: cte:CT1211 superoxide dismutase YP_001998758.1 KEGG: cte:CT1212 hypothetical protein YP_001998759.1 SMART: PUA domain containing protein; KEGG: cte:CT1213 hypothetical protein YP_001998760.1 PFAM: 5 nucleotidase deoxy cytosolic type C; KEGG: cte:CT1214 hypothetical protein YP_001998761.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cte:CT1215 thioredoxin YP_001998762.1 KEGG: aeh:Mlg_2858 uncharacterized protein with a C-terminal OMP (outer membrane protein) domain YP_001998763.1 KEGG: cte:CT1217 hypothetical protein YP_001998764.1 KEGG: cte:CT1218 hypothetical protein YP_001998765.1 KEGG: cte:CT1219 hypothetical protein YP_001998766.1 PFAM: HI0933 family protein; KEGG: cte:CT1220 hypothetical protein YP_001998767.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cte:CT1221 HlyD family secretion protein YP_001998768.1 PFAM: protein of unknown function DUF214; KEGG: cte:CT1222 conserved hypothetical protein YP_001998769.1 KEGG: ote:Oter_1836 hypothetical protein YP_001998770.1 KEGG: cch:Cag_0710 hypothetical protein YP_001998771.1 KEGG: sfr:Sfri_3962 hypothetical protein YP_001998772.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0953 ABC transporter, ATP-binding protein YP_001998773.1 PFAM: nuclear protein SET; KEGG: cte:CT0952 hypothetical protein YP_001998774.1 PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: cte:CT0951 alcohol dehydrogenase, iron-containing YP_001998775.1 PFAM: protein of unknown function DUF134; KEGG: cte:CT0950 hypothetical protein YP_001998776.1 PFAM: OsmC family protein; KEGG: cte:CT0949 hypothetical protein YP_001998777.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cte:CT0948 cobalamin 5'-phosphate synthase YP_001998778.1 PFAM: alpha/beta hydrolase fold; Ndr family protein; KEGG: cte:CT0947 hydrolase, alpha/beta hydrolase fold family YP_001998779.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_001998780.1 PFAM: cobalbumin biosynthesis protein; KEGG: cte:CT0945 cobalamin biosynthesis protein CobP YP_001998781.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cte:CT0944 hypothetical protein YP_001998782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0943 iron compound ABC transporter, ATP-binding protein YP_001998783.1 PFAM: transport system permease protein; KEGG: cte:CT0942 FecCD transport family protein YP_001998784.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cte:CT0941 cob(I)alamin adenosyltransferase YP_001998785.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_001998786.1 TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: cte:CT0939 aminotransferase, class II YP_001998787.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_001998788.1 TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: cte:CT0937 nitroreductase family protein YP_001998789.1 PFAM: periplasmic binding protein; KEGG: pvi:Cvib_0813 hypothetical protein YP_001998790.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pvi:Cvib_0812 TonB-dependent receptor YP_001998791.1 PFAM: Na+/Picotransporter; KEGG: cte:CT0934 transporter YP_001998792.1 PFAM: cyclase/dehydrase; KEGG: cte:CT0933 hypothetical protein YP_001998795.1 PFAM: NUDIX hydrolase; KEGG: cte:CT0931 NUDIX/MutT family protein YP_001998796.1 PFAM: periplasmic binding protein; KEGG: cte:CT0930 ABC transporter, periplasmic substrate-binding protein YP_001998797.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: cte:CT0929 cobyrinic acid a,c-diamide synthase YP_001998798.1 PFAM: Methyltransferase type 12; KEGG: rle:RL2803 hypothetical protein YP_001998799.1 PFAM: Prismane; KEGG: cph:Cpha266_0149 carbon-monoxide dehydrogenase (acceptor) YP_001998800.1 KEGG: cph:Cpha266_0148 cytochrome c, class I YP_001998801.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0147 ABC transporter related YP_001998802.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0146 ABC transporter related YP_001998803.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_0145 binding-protein-dependent transport systems inner membrane component YP_001998804.1 KEGG: cph:Cpha266_0144 twin-arginine translocation pathway signal YP_001998805.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cph:Cpha266_0143 cobyrinic acid a,c-diamide synthase YP_001998806.1 KEGG: cte:CT0928 hypothetical protein YP_001998807.1 KEGG: rso:RS05060 signal peptide protein YP_001998808.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cte:CT1232 geranylgeranyl hydrogenase BchP YP_001998810.1 PFAM: protein of unknown function DUF477; KEGG: lbi:LEPBI_I3031 hypothetical protein YP_001998811.1 PFAM: protein of unknown function DUF477; KEGG: tde:TDE2528 hypothetical protein YP_001998813.1 KEGG: cph:Cpha266_1576 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_001998814.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_1144 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_001998815.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: plt:Plut_1439 cation efflux protein YP_001998816.1 KEGG: sat:SYN_01315 hypothetical cytosolic protein YP_001998817.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cch:Cag_0439 periplasmic sensor signal transduction histidine kinase YP_001998818.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cph:Cpha266_1205 two component transcriptional regulator, winged helix family YP_001998819.1 KEGG: plt:Plut_1211 hypothetical protein YP_001998820.1 PFAM: protein of unknown function DUF1648; KEGG: cte:CT1237 hypothetical protein YP_001998821.1 KEGG: cph:Cpha266_1775 hypothetical protein YP_001998822.1 KEGG: scl:sce2775 hypothetical protein YP_001998823.1 KEGG: aba:Acid345_1764 membrane protein YP_001998824.1 PFAM: major facilitator superfamily MFS_1; KEGG: cte:CT0992 drug resistance protein YP_001998825.1 PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; Oxidoreductase domain; KEGG: cte:CT0991 oxidoreductase, Gfo/Idh/MocA family YP_001998826.1 TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: cte:CT0990 polyA polymerase family protein YP_001998827.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001998828.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_001998829.1 KEGG: cte:CT0987 anti-sigma factor YP_001998830.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cte:CT0986 ammonium transporter YP_001998831.1 PFAM: nitrogen regulatory protein P-II; KEGG: cte:CT0985 P-II family protein YP_001998832.1 KEGG: cte:CT0984 hypothetical protein YP_001998833.1 KEGG: cte:CT0983 hypothetical protein YP_001998834.1 KEGG: cte:CT0982 hypothetical protein YP_001998835.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_001998836.1 KEGG: cte:CT0980 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001998837.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: cte:CT0979 membrane-bound lytic murein transglycosylase YP_001998838.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001998839.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cte:CT0977 alpha-amylase family protein YP_001998840.1 PFAM: PfkB domain protein; KEGG: cte:CT0976 carbohydrate kinase, PfkB family YP_001998841.1 PFAM: Na+/solute symporter; KEGG: cte:CT0975 sodium:solute symporter family protein YP_001998842.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: cte:CT0974 Maf protein YP_001998843.1 KEGG: cte:CT0973 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_001998844.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cte:CT0972 anti-anti-sigma factor YP_001998846.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge YP_001998847.1 PFAM: conserved hypothetical protein; KEGG: cte:CT0970 hypothetical protein YP_001998848.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001998849.1 PFAM: PSP1 domain protein; KEGG: cte:CT0968 hypothetical protein YP_001998850.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: cte:CT0967 hypothetical protein YP_001998851.1 PFAM: aminotransferase class I and II; KEGG: cte:CT0966 aspartate aminotransferase YP_001998852.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001998853.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase KEGG: cte:CT0964 methylase YP_001998854.1 PFAM: SNARE associated Golgi protein; KEGG: cte:CT0961 DedA family protein YP_001998855.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001998856.1 KEGG: cte:CT0959 hypothetical protein YP_001998857.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: cte:CT0958 hypothetical protein YP_001998859.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cte:CT0957 hypothetical protein YP_001998860.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001998861.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001998862.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT1253 hydrolase, alpha/beta hydrolase fold family YP_001998863.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cte:CT1255 SpoU rRNA methylase family protein YP_001998864.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: cte:CT1256 histidinol-phosphate aminotransferase YP_001998865.1 KEGG: cte:CT1257 hypothetical protein YP_001998866.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: cte:CT1258 ADP-L-glycero-D-mannoheptose-6-epimerase YP_001998867.1 PFAM: PhoH family protein; KEGG: cte:CT1259 PhoH family protein YP_001998868.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1260 ferredoxin, 4Fe-4S YP_001998869.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pvi:Cvib_0749 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001998870.1 PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: cte:CT1263 hypothetical protein YP_001998871.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: cte:CT1265 D-alanyl-D-alanine carboxypeptidase YP_001998872.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cte:CT1268 acetyltransferase, GNAT family YP_001998873.1 KEGG: cte:CT1269 hypothetical protein YP_001998874.1 TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cte:CT1270 bacteriochlorophyll synthase, 34 kDa subunit YP_001998875.1 PFAM: protein of unknown function UPF0047; KEGG: mtp:Mthe_1649 protein of unknown function UPF0047 YP_001998876.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT1271 glycosyl transferase YP_001998877.1 PFAM: conserved hypothetical protein; KEGG: cte:CT1272 hypothetical protein YP_001998878.1 KEGG: cte:CT1273 hypothetical protein YP_001998879.1 KEGG: cph:Cpha266_1455 hypothetical protein YP_001998880.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: cte:CT1275 alcohol dehydrogenase, zinc-containing YP_001998881.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: cph:Cpha266_1457 dinitrogenase iron-molybdenum cofactor biosynthesis YP_001998882.1 PFAM: protein of unknown function DUF134; KEGG: cte:CT1277 hypothetical protein YP_001998883.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae YP_001998884.1 PFAM: protein of unknown function DUF255; KEGG: cte:CT1279 hypothetical protein YP_001998885.1 KEGG: cte:CT1280 hypothetical protein YP_001998886.1 KEGG: cte:CT1284 hypothetical protein YP_001998887.1 KEGG: cte:CT1285 hypothetical protein YP_001998888.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cte:CT1286 multidrug resistance protein, FusA/NodT family YP_001998889.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cte:CT1287 multidrug resistance protein, AcrB/AcrD family YP_001998890.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cte:CT1288 multidrug resistance protein, AcrA/AcrE family YP_001998891.1 KEGG: cte:CT1289 methylated-DNA-protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding YP_001998892.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: afw:Anae109_3601 short-chain dehydrogenase/reductase SDR YP_001998893.1 PFAM: peptidase membrane zinc metallopeptidase KEGG: cte:CT0786 hypothetical protein YP_001998894.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cte:CT0785 thioredoxin YP_001998895.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cte:CT0782 6-pyruvoyltetrahydropterin synthase YP_001998896.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_001998897.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: cte:CT0780 hydrogenase expression/formation protein HupD YP_001998898.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: cte:CT0778 nickel-dependent hydrogenase b-type cytochrome subunit YP_001998899.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: plt:Plut_1447 hydrogenase large chain YP_001998900.1 KEGG: cph:Cpha266_0972 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein YP_001998901.1 KEGG: cte:CT0776 NADH dehydrogenase I subunit 2; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001998902.1 KEGG: cte:CT0775 NADH dehydrogenase I subunit 4; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001998903.1 KEGG: cte:CT0774 NADH dehydrogenase I subunit 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_001998904.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: cte:CT0773 NADH dehydrogenase I subunit 4L YP_001998905.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: cte:CT0772 NADH dehydrogenase I subunit 6 YP_001998906.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT0771 NADH dehydrogenase I, 23 kDa subunit YP_001998907.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: cte:CT0770 NADH dehydrogenase I chain H YP_001998908.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: cph:Cpha266_0964 NADH dehydrogenase (ubiquinone) YP_001998909.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: cte:CT0768 NADH dehydrogenase I, 30 kDa subunit YP_001998910.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_001998911.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: cte:CT0766 NADH dehydrogenase I, subunit 3 YP_001998912.1 KEGG: cte:CT0765 hypothetical protein YP_001998913.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cte:CT0764 TPR domain protein YP_001998914.1 PFAM: ferrochelatase; KEGG: cte:CT0763 ferrochelatase YP_001998915.1 KEGG: cte:CT0762 hypothetical protein YP_001998916.1 PFAM: histidine triad (HIT) protein; KEGG: cte:CT0760 Hit family protein YP_001998917.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT0759 hypothetical protein YP_001998918.1 PFAM: outer membrane efflux protein; KEGG: cte:CT0758 outer membrane efflux protein YP_001998919.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cte:CT0757 ATPase, AAA family YP_001998920.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_001998921.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_001998922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0753 ABC transporter, ATP-binding protein YP_001998923.1 KEGG: cte:CT0749 hypothetical protein YP_001998924.1 KEGG: pvi:Cvib_0837 hypothetical protein YP_001998925.1 KEGG: cte:CT1304 hypothetical protein YP_001998926.1 KEGG: cte:CT1305 hypothetical protein YP_001998927.1 KEGG: cte:CT1306 hypothetical protein YP_001998928.1 KEGG: plt:Plut_2011 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001998929.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cte:CT1308 oxidoreductase, short-chain dehydrogenase/reductase family YP_001998930.1 KEGG: cte:CT1309 hypothetical protein YP_001998931.1 KEGG: cte:CT1311 hypothetical protein YP_001998933.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT1312 lipase YP_001998934.1 PFAM: thymidylate kinase; KEGG: cte:CT1313 thymidylate kinase YP_001998935.1 KEGG: cte:CT1314 hypothetical protein YP_001998936.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: cte:CT1315 hydrolase, haloacid dehalogenase-like family YP_001998937.1 TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: cte:CT1316 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_001998938.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: cte:CT1317 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_001998939.1 PFAM: thioesterase superfamily protein; KEGG: cte:CT1318 ComA2 protein YP_001998940.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT1320 BchE/P-methylase family protein YP_001998941.1 KEGG: cte:CT1305 hypothetical protein YP_001998942.1 PFAM: zinc/iron permease; KEGG: cch:Cag_0157 zinc transporter ZupT YP_001998943.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001998944.1 KEGG: cte:CT1324 DNA polymerase III, gamma/tau subunit YP_001998945.1 KEGG: cte:CT1324 DNA polymerase III, gamma/tau subunit; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_001998946.1 PFAM: ribonuclease BN; KEGG: cte:CT1325 ribonuclease BN YP_001998947.1 PFAM: Rubrerythrin; KEGG: cte:CT1327 rubrerythrin YP_001998948.1 PFAM: Ferritin Dps family protein; KEGG: cte:CT1328 bacterioferritin YP_001998949.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_001998950.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: cte:CT1331 molybdopterin biosynthesis protein MoeA YP_001998951.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; MobB is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway YP_001998952.1 KEGG: cte:CT1333 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001998953.1 PFAM: MOSC domain containing protein; KEGG: cte:CT1334 hypothetical protein YP_001998954.1 KEGG: cte:CT1335 hypothetical protein YP_001998955.1 PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_1984 pentapeptide repeat protein YP_001998956.1 PFAM: SCP-like extracellular; KEGG: tde:TDE0824 lipoprotein YP_001998957.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cte:CT1434 hypothetical protein YP_001998958.1 KEGG: cte:CT1436 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein YP_001998959.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cte:CT1437 6-pyruvoyl tetrahydrobiopterin synthase YP_001998960.1 KEGG: ote:Oter_1096 hypothetical protein YP_001998962.1 KEGG: cte:CT1438 hypothetical protein YP_001998963.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT0536 glycosyl transferase YP_001998964.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_001998965.1 PFAM: Abortive infection protein; KEGG: cte:CT0534 hypothetical protein YP_001998966.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: cte:CT0532 ExsB protein YP_001998967.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cte:CT0531 sensor histidine kinase/response regulator YP_001998968.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001998969.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001998970.1 KEGG: cte:CT0528 hypothetical protein YP_001998971.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: cte:CT0527 excinuclease ABC, subunit A YP_001998972.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cte:CT0525 hypothetical protein YP_001998973.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT0524 dihydrolipoamide acetyltransferase YP_001998974.1 KEGG: cte:CT0523 hypothetical protein YP_001998975.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001998976.1 KEGG: bca:BCE_5388 hypothetical protein YP_001998977.1 SMART: Rhodanese domain protein; KEGG: cte:CT0514 hypothetical protein YP_001998979.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: plt:Plut_0843 Sel1-like repeat YP_001998980.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; autotransporter-associated beta strand repeat protein; PFAM: filamentous haemagglutinin domain protein; KEGG: mmw:Mmwyl1_0481 filamentous haemagglutinin family outer membrane protein YP_001998981.1 PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: cch:Cag_1054 probable activation/secretion signal peptide protein YP_001998982.1 PFAM: glutamine amidotransferase class-I; KEGG: cte:CT0512 glutamine amidotransferase, class I YP_001998983.1 KEGG: cte:CT0511 DNA deoxyribodipyrimidine photolyase, class II; TIGRFAM: deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein YP_001998984.1 TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: cph:Cpha266_0253 addiction module component, TIGR02574 family YP_001998986.1 KEGG: cte:CT0509 ribonuclease II family protein; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain YP_001998987.1 KEGG: cak:Caul_2970 hypothetical protein YP_001998988.1 KEGG: cte:CT0501 hypothetical protein YP_001998989.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cte:CT0496 polysulfide reductase, subunit A YP_001998990.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT0495 polysulfide reductase, subunit B YP_001998991.1 PFAM: Polysulphide reductase NrfD; KEGG: cte:CT0494 polysulfide reductase, subunit C YP_001998992.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: cte:CT0493 hypothetical protein YP_001998993.1 KEGG: sde:Sde_3690 hypothetical protein YP_001998995.1 PFAM: conserved hypothetical protein; KEGG: cte:CT0488 hypothetical protein YP_001998996.1 KEGG: cte:CT0487 hypothetical protein YP_001998997.1 KEGG: plt:Plut_1726 hypothetical protein YP_001998998.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pvi:Cvib_1365 GCN5-related N-acetyltransferase YP_001998999.1 PFAM: Na+/solute symporter; KEGG: pvi:Cvib_1366 SSS sodium solute transporter superfamily YP_001999000.1 KEGG: plt:Plut_1576 protein of unknown function DUF160; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_001999001.1 PFAM: regulatory protein MarR; KEGG: plt:Plut_1577 transcriptional regulator, MarR family YP_001999002.1 KEGG: plt:Plut_1182 hypothetical protein YP_001999003.1 PFAM: sodium:dicarboxylate symporter; KEGG: rno:25550 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 YP_001999004.1 PFAM: pentapeptide repeat protein; WD-40 repeat protein; KEGG: cph:Cpha266_0840 ribosome assembly protein 4 (RSA4) YP_001999005.1 PFAM: WD-40 repeat protein; KEGG: cph:Cpha266_0840 ribosome assembly protein 4 (RSA4) YP_001999006.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: pvi:Cvib_1263 monovalent cation/proton antiporter, MnhG/PhaG subunit YP_001999007.1 PFAM: multiple resistance and pH regulation protein F; KEGG: pvi:Cvib_1262 multiple resistance and pH regulation protein F YP_001999008.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_001999009.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pvi:Cvib_1260 NADH dehydrogenase (quinone) YP_001999010.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_001999011.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_001999012.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+ YP_001999013.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: cte:CT0483 hypothetical protein YP_001999014.1 alkyl hydroperoxidase; catalyze the reduction of hydrogen peroxide to water and the reduction of alkyl hydroperoxides to the corresponding alcohols YP_001999015.1 KEGG: cph:Cpha266_2262 hypothetical protein YP_001999016.1 KEGG: cyt:cce_2701 hypothetical protein YP_001999017.1 KEGG: cph:Cpha266_2261 DnaK like protein YP_001999018.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_2260 AAA ATPase, central domain protein YP_001999019.1 PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_2259 protein of unknown function DUF323 YP_001999020.1 KEGG: vco:VC0395_0904 hypothetical protein YP_001999021.1 KEGG: gur:Gura_0315 hypothetical protein YP_001999022.1 PFAM: UspA domain protein; KEGG: spc:Sputcn32_1227 UspA domain protein YP_001999023.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sfr:Sfri_0790 sulphate transporter YP_001999024.1 KEGG: met:M446_2680 asparagine synthase family amidotransferase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); asparagine synthase family amidotransferase; PFAM: glutamine amidotransferase class-II; asparagine synthase YP_001999025.1 KEGG: eba:ebA5272 acetyltransferase; TIGRFAM: GNAT-family acetyltransferase TIGR03103; PFAM: phosphoribosylglycinamide synthetase; GCN5-related N-acetyltransferase; RimK domain protein ATP-grasp YP_001999026.1 TIGRFAM: hydrolase, peptidase M42 family; PFAM: peptidase M42 family protein; KEGG: met:M446_2678 hydrolase, peptidase M42 family YP_001999027.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cte:CT0994 cytidine and deoxycytidylate deaminase family protein YP_001999028.1 KEGG: cph:Cpha266_0316 hypothetical protein YP_001999029.1 PFAM: FeoA family protein; KEGG: cte:CT1744 hypothetical protein YP_001999030.1 PFAM: FeoA family protein; KEGG: cte:CT1743 ferrous iron transport protein A YP_001999031.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: cte:CT1742 ferrous iron transport protein B YP_001999032.1 KEGG: cte:CT1741 hypothetical protein YP_001999033.1 KEGG: cte:CT1735 hypothetical protein YP_001999034.1 PFAM: conserved hypothetical protein; KEGG: cte:CT1722 hypothetical protein YP_001999035.1 KEGG: cte:CT1723 hypothetical protein YP_001999037.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_001999038.1 TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: cte:CT0545 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_001999039.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_001999040.1 KEGG: cte:CT0547 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; SMART: actin/actin family protein YP_001999041.1 PFAM: glycosyl transferase group 1; KEGG: cte:CT0548 glycosyl transferase YP_001999043.1 KEGG: mba:Mbar_A3539 hypothetical protein YP_001999044.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT0443 glycosyl transferase YP_001999045.1 KEGG: zmo:ZMO0500 hypothetical protein YP_001999046.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_4009 nucleotidyl transferase YP_001999047.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: ppd:Ppro_3349 CDP-glucose 4,6-dehydratase YP_001999048.1 KEGG: sat:SYN_01022 seceted metal-dependent hydrolase of the beta-lactamase superfamily III YP_001999049.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: gur:Gura_3788 DegT/DnrJ/EryC1/StrS aminotransferase YP_001999050.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sun:SUN_2139 hypothetical protein YP_001999051.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sun:SUN_2140 acetolactate synthase, large subunit YP_001999052.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: mmi:MMAR_2330 short chain dehydrogenase YP_001999053.1 PFAM: 3-dehydroquinate synthase; KEGG: rfr:Rfer_1247 3-dehydroquinate synthase YP_001999054.1 KEGG: mmi:MMAR_2331 hypothetical protein YP_001999055.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: ppf:Pput_1486 NAD-dependent epimerase/dehydratase YP_001999056.1 KEGG: lci:LCK_00918 GtrA-like protein YP_001999057.1 PFAM: glycosyl transferase family 2; KEGG: sun:SUN_2146 glycosyl transferase YP_001999058.1 KEGG: rca:Rcas_0658 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein YP_001999060.1 KEGG: cte:CT0439 hypothetical protein YP_001999061.1 PFAM: peptidase A24A prepilin type IV; KEGG: pvi:Cvib_0562 peptidase A24A, prepilin type IV YP_001999062.1 PFAM: type II secretion system protein; KEGG: cte:CT0436 TadC protein YP_001999063.1 PFAM: type II secretion system protein; KEGG: cte:CT0435 TadB protein YP_001999064.1 PFAM: type II secretion system protein E; KEGG: cte:CT0434 type II secretion system protein YP_001999065.1 KEGG: plt:Plut_0656 Flp pilus assembly protein ATPase CpaE-like YP_001999066.1 KEGG: plt:Plut_0657 hypothetical protein YP_001999067.1 PFAM: TadE family protein; KEGG: pvi:Cvib_0568 TadE family protein YP_001999068.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: plt:Plut_0659 type II secretion system protein YP_001999069.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: plt:Plut_0660 pilus assembly protein CpaB YP_001999070.1 PFAM: Flp/Fap pilin component; KEGG: cte:CT0428 pilus assembly protein PilA YP_001999072.1 TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; Precorrin-6x reductase CbiJ/CobK; KEGG: cte:CT0384 precorrin-6X reductase/cobalamin biosynthesis protein CbiD YP_001999073.1 KEGG: cte:CT0385 precorrin-4 C11-methyltransferase/cobalamin biosynthesis protein; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein YP_001999074.1 KEGG: cte:CT0386 precorrin-6y C5,15-methyltransferase, decarboxylating; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_001999075.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Precorrin-8X methylmutase CbiC/CobH; KEGG: cte:CT0387 precorrin-3B C17-methyltransferase/precorrin-8X methylmutase YP_001999076.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT0388 precorrin-2 C20-methyltransferase YP_001999077.1 PFAM: anaerobic cobalt chelatase; KEGG: cte:CT0389 cobalt chelatase CbiK YP_001999078.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT0390 uroporphyrin-III C-methyltransferase YP_001999079.1 KEGG: cte:CT0391 cobalt transport protein; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001999080.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cte:CT0392 cobalt transport protein YP_001999081.1 periplasmic cobalt binding component of the cobalt transport system YP_001999082.1 catalyzes the ATP-dependent transport of cobalt YP_001999083.1 KEGG: cte:CT0395 hypothetical protein YP_001999084.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: cph:Cpha266_2114 thiol-disulphide oxidoreductase DCC YP_001999085.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT0383 methlytransferase YP_001999087.1 binds and unfolds substrates as part of the ClpXP protease YP_001999088.1 KEGG: cte:CT0403 hypothetical protein YP_001999089.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_001999090.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: cte:CT0401 glutamate synthase, large subunit YP_001999091.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_001999092.1 PFAM: dihydroorotate dehydrogenase; 2-nitropropane dioxygenase NPD; KEGG: cte:CT0398 hypothetical protein YP_001999093.1 KEGG: cte:CT0397 hypothetical protein YP_001999094.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cte:CT0381 cytosine deaminase YP_001999095.1 catalyzes the interconversion of succinyl-CoA and succinate YP_001999096.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: cte:CT0378 ABC transporter, ATP-binding protein YP_001999097.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cte:CT0377 hypothetical protein YP_001999098.1 PFAM: outer membrane efflux protein; KEGG: cte:CT0376 FusA/NodT family protein YP_001999099.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0375 ABC transporter, ATP-binding protein YP_001999100.1 KEGG: cte:CT0375 ABC transporter, ATP-binding protein YP_001999101.1 PFAM: small multidrug resistance protein; KEGG: cte:CT0374 SugE protein YP_001999102.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cte:CT0373 oxidoreductase, Gfo/Idh/MocA family YP_001999103.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001999104.1 KEGG: cte:CT0371 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_001999105.1 PFAM: protein of unknown function DUF985; KEGG: cte:CT0370 hypothetical protein YP_001999106.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: cte:CT0369 NADH dehydrogenase YP_001999107.1 KEGG: cte:CT0368 hypothetical protein YP_001999108.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_001999109.1 KEGG: cte:CT0366 hypothetical protein YP_001999110.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: cte:CT1583 hypothetical protein YP_001999111.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cte:CT1584 hypothetical protein YP_001999112.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cte:CT1585 hypothetical protein YP_001999113.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: cte:CT1586 MotA/TolQ/ExbB proton channel family protein YP_001999114.1 KEGG: cte:CT1588 DNA primase, TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein YP_001999115.1 KEGG: cte:CT1589 hypothetical protein YP_001999116.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001999117.1 KEGG: cte:CT1591 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_001999118.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: cte:CT1592 carbamoyl-phosphate synthase, large subunit YP_001999119.1 KEGG: cph:Cpha266_0598 hypothetical protein YP_001999120.1 KEGG: cte:CT1594 hypothetical protein YP_001999121.1 PFAM: Ferritin Dps family protein; KEGG: cph:Cpha266_0596 ferritin, Dps family protein YP_001999122.1 PFAM: metallophosphoesterase; KEGG: cte:CT1595 hypothetical protein YP_001999123.1 KEGG: cte:CT1596 glycogen phosphorylase family protein; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_001999124.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: cte:CT1597 dihydroorotate dehydrogenase YP_001999125.1 KEGG: cph:Cpha266_0592 hypothetical protein YP_001999126.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_001999127.1 PFAM: protein of unknown function DUF214; KEGG: cte:CT1602 lipoprotein releasing system YP_001999128.1 PFAM: phosphofructokinase; KEGG: cte:CT1603 phosphofructokinase YP_001999129.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001999130.1 KEGG: cte:CT1606 DNA polymerase III, delta subunit YP_001999131.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cte:CT0541 CBS domain protein YP_001999132.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP YP_001999133.1 KEGG: tva:TVAG_465350 hypothetical protein Pfam: Vicilin_N PROSITE: GLN_RICH GLU_RICH LYS_RICH NLS_BP YP_001999134.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pin:Ping_2901 L-2-haloalkanoic acid dehalogenase, HAD superfamily protein YP_001999135.1 PFAM: cyclase/dehydrase; KEGG: cte:CT0537 hypothetical protein YP_001999136.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT1440 MoaA/NifB/PqqE family protein YP_001999137.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: cte:CT1441 PucC protein YP_001999138.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_001999139.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001999140.1 KEGG: cte:CT1445 hypothetical protein YP_001999141.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001999142.1 KEGG: cte:CT1447 serine protease; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001999143.1 KEGG: cte:CT1448 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like YP_001999144.1 KEGG: cte:CT1449 hypothetical protein YP_001999145.1 KEGG: cte:CT1450 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_001999146.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001999147.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: cte:CT1453 methionyl-tRNA formyltransferase YP_001999148.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001999149.1 PFAM: ferric-uptake regulator; KEGG: cte:CT1455 ferric uptake regulator family protein YP_001999150.1 PFAM: small multidrug resistance protein; KEGG: cte:CT1456 SMR drug efflux transporter YP_001999151.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001999152.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0166 TPR repeat protein YP_001999153.1 PFAM: NADPH-dependent FMN reductase; KEGG: cte:CT1462 hypothetical protein YP_001999154.1 KEGG: cte:CT1463 hypothetical protein YP_001999155.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: pvi:Cvib_0396 phosphoribulokinase/uridine kinase YP_001999156.1 PFAM: nitroreductase; KEGG: cch:Cag_0586 hypothetical protein YP_001999157.1 PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: cte:CT1470 rod shape-determining protein MreB YP_001999158.1 KEGG: cph:Cpha266_0086 hypothetical protein YP_001999159.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: cte:CT0642 hypothetical protein YP_001999160.1 PFAM: Radical SAM domain protein; KEGG: cbf:CLI_3123 radical SAM domain protein YP_001999162.1 PFAM: major intrinsic protein; KEGG: cte:CT1472 major intrinsic protein YP_001999163.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001999164.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1474 ABC transporter, ATP-binding protein YP_001999165.1 PFAM: major facilitator superfamily MFS_1; KEGG: cte:CT1475 transporter YP_001999166.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cte:CT1477 DegT/DnrJ/EryC1/StrS family protein YP_001999167.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cte:CT1479 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_001999168.1 KEGG: cte:CT1480 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001999169.1 KEGG: cte:CT1482 hypothetical protein YP_001999170.1 PFAM: Proto-chlorophyllide reductase 57 kD subunit; KEGG: cte:CT1483 hypothetical protein YP_001999171.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_001999172.1 PFAM: GrpE protein; KEGG: cte:CT1485 GrpE protein YP_001999173.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: cte:CT1486 heat-inducible transcription repressor HrcA YP_001999174.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: RNA methylase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1487 hemK protein YP_001999175.1 KEGG: cte:CT1489 hypothetical protein YP_001999176.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001999177.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cte:CT1492 thiolredoxin peroxidase YP_001999178.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: cte:CT1493 xanthine/uracil permease family protein YP_001999179.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cte:CT1494 carbon-nitrogen hydrolase family protein YP_001999180.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001999181.1 PFAM: Sporulation domain protein; KEGG: cte:CT1496 hypothetical protein YP_001999182.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cte:CT1497 sigma-54-dependent transcriptional regulator YP_001999183.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cte:CT1498 apolipoprotein N-acyltransferase YP_001999184.1 PFAM: bacteriochlorophyll A protein; KEGG: cte:CT1499 bacteriochlorophyll A protein YP_001999185.1 PFAM: regulatory protein MerR; KEGG: cte:CT1500 transcriptional regulator, MerR family YP_001999186.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1501 ABC transporter, ATP-binding protein YP_001999187.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT1502 BchE/P-methylase family protein YP_001999188.1 This protein performs the mismatch recognition step during the DNA repair process YP_001999189.1 KEGG: cte:CT1504 hypothetical protein YP_001999190.1 PFAM: ribosomal protein L21; KEGG: cte:CT1505 50S ribosomal protein L21 YP_001999191.1 involved in the peptidyltransferase reaction during translation YP_001999192.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_001999193.1 KEGG: mgm:Mmc1_1186 hypothetical protein YP_001999194.1 PFAM: band 7 protein; KEGG: afw:Anae109_0935 band 7 protein YP_001999195.1 PFAM: protein of unknown function DUF107; KEGG: dps:DP1870 hypothetical protein YP_001999197.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: cte:CT1508 hypothetical protein YP_001999198.1 PFAM: peptidase M48 Ste24p; KEGG: cte:CT1509 CAAX prenyl protease 1 YP_001999199.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cte:CT1510 carbon-nitrogen hydrolase family protein YP_001999200.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_001999201.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: cte:CT1512 thioredoxin reductase YP_001999202.1 KEGG: cte:CT1513 hypothetical protein YP_001999203.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001999204.1 PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: cte:CT2083 hypothetical protein YP_001999205.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: cte:CT1516 Sec-independent protein translocase protein TatA YP_001999206.1 KEGG: cte:CT1519 hypothetical protein YP_001999207.1 TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: cte:CT1521 hypothetical protein YP_001999208.1 KEGG: noc:Noc_0544 hypothetical protein YP_001999209.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: cte:CT1524 phosphoketolase YP_001999210.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: cte:CT1525 acetate kinase YP_001999211.1 KEGG: cte:CT1527 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001999212.1 TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: cte:CT1528 homocitrate synthase YP_001999213.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cte:CT1529 nitrogen fixation specific regulatory protein NifA YP_001999214.1 KEGG: cph:Cpha266_1921 hypothetical protein YP_001999215.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex YP_001999216.1 PFAM: nitrogen regulatory protein P-II; KEGG: cte:CT1534 nitrogen regulatory protein, P-II family YP_001999217.1 PFAM: nitrogen regulatory protein P-II; KEGG: cte:CT1535 nitrogen regulatory protein, P-II family YP_001999218.1 KEGG: cte:CT1536 nitrogenase molybdenum-iron protein, alpha subunit; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001999219.1 KEGG: cte:CT1537 nitrogenase molybdenum-iron protein, beta subunit; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001999220.1 KEGG: cte:CT1538 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1 YP_001999221.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: cte:CT1539 nitrogenase iron-molybdenum cofactor biosynthesis protein NifN YP_001999222.1 KEGG: cte:CT1540 NifB protein; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001999223.1 KEGG: cte:CT1541 ferredoxin, 2Fe-2S YP_001999224.1 KEGG: pvi:Cvib_1352 cytochrome c YP_001999225.1 KEGG: cte:CT1542 TonB-dependent receptor YP_001999226.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: cte:CT1543 molybdenum transport protein ModE YP_001999227.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cte:CT1544 molybdenum ABC transporter, periplasmic molybdenum-binding protein YP_001999228.1 PFAM: Radical SAM domain protein; KEGG: cje:Cj1433c hypothetical protein YP_001999229.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cte:CT1792 hydrogenase expression/formation protein HypE YP_001999230.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: mgm:Mmc1_2003 Sel1 domain protein repeat-containing protein YP_001999231.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: cte:CT1794 hydrogenase expression/formation protein HypD YP_001999232.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: cte:CT1795 hydrogenase assembly chaperone HypC/HupF YP_001999233.1 KEGG: cte:CT1796 hypothetical protein YP_001999234.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: cte:CT1797 hydrogenase maturation protein HypF YP_001999235.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cte:CT1798 hydrogenase accessory protein HypB YP_001999236.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: cte:CT1799 hydrogenase expression/formation protein HupA YP_001999237.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001999238.1 KEGG: cte:CT1801 hypothetical protein YP_001999239.1 PFAM: NUDIX hydrolase; KEGG: pvi:Cvib_0546 NUDIX hydrolase YP_001999240.1 KEGG: cte:CT1804 hypothetical protein YP_001999241.1 KEGG: cte:CT1805 hypothetical protein YP_001999242.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001999243.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cte:CT1808 TPR domain protein YP_001999244.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: cte:CT1809 shikimate 5-dehydrogenase YP_001999245.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001999246.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cte:CT1811 Sec-independent protein translocase protein TatD YP_001999247.1 KEGG: cte:CT1812 hypothetical protein YP_001999248.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cte:CT1813 peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_001999249.1 PFAM: alanine racemase domain protein; KEGG: cte:CT1814 hypothetical protein YP_001999250.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_001999251.1 KEGG: cte:CT1816 methylthioribose-1-phosphate isomerase; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_001999252.1 PFAM: cytochrome c oxidase subunit I; KEGG: cch:Cag_1356 cytochrome-cbb3 oxidase, subunit I YP_001999253.1 CcoO; FixO YP_001999254.1 KEGG: afw:Anae109_1221 hypothetical protein YP_001999255.1 PFAM: cytochrome c class I; KEGG: cch:Cag_1358 probable cb-type cytochrome c oxidase subunit III YP_001999256.1 KEGG: cch:Cag_1359 polyferredoxin-like YP_001999257.1 KEGG: cch:Cag_1367 hypothetical protein YP_001999258.1 KEGG: cch:Cag_1368 hypothetical protein YP_001999259.1 KEGG: cch:Cag_1369 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_001999260.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: cch:Cag_1370 cytochrome oxidase maturation protein cbb3-type YP_001999261.1 KEGG: cch:Cag_1371 hypothetical protein YP_001999262.1 PFAM: cytochrome c class I; KEGG: cch:Cag_1358 probable cb-type cytochrome c oxidase subunit III YP_001999263.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: cte:CT1818 cytochrome d ubiquinol oxidase, subunit I YP_001999264.1 KEGG: cte:CT1819 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II YP_001999265.1 KEGG: cte:CT1821 ABC transporter, ATP-binding protein CydD; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001999266.1 KEGG: cte:CT1822 ABC transporter, ATP-binding protein CydC; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase YP_001999267.1 PFAM: Lipocalin family protein; KEGG: cte:CT1823 outer membrane lipoprotein Blc YP_001999268.1 PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_0457 signal transduction protein with NACHT domain YP_001999269.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cte:CT1824 cation efflux family protein YP_001999270.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_001999271.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: plt:Plut_0364 subtilisin-like serine protease-like YP_001999272.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: pvi:Cvib_0514 phosphoesterase, PA-phosphatase related YP_001999273.1 PFAM: glycosyl transferase family 39; KEGG: cte:CT0363 hypothetical protein YP_001999274.1 KEGG: cte:CT0361 hypothetical protein YP_001999275.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cte:CT0360 single-stranded-DNA-specific exonuclease RecJ YP_001999276.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_001999277.1 PFAM: metallophosphoesterase; KEGG: cte:CT0357 hypothetical protein YP_001999278.1 PFAM: Pirin domain protein; KEGG: cph:Cpha266_0684 pirin domain protein domain protein YP_001999279.1 KEGG: cte:CT0352 hypothetical protein YP_001999280.1 KEGG: cte:CT0351 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type YP_001999281.1 KEGG: cte:CT0350 enoyl-[acyl-carrier protein] reductase (NADH) YP_001999282.1 KEGG: cte:CT0348 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001999283.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_001999284.1 PFAM: nitroreductase; KEGG: cte:CT0345 nitroreductase family protein YP_001999285.1 KEGG: cte:CT0344 hypothetical protein YP_001999286.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_001999287.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cte:CT0340 alpha-amylase family protein YP_001999288.1 PFAM: protein of unknown function UPF0047; KEGG: cte:CT0339 hypothetical protein YP_001999289.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001999290.1 PFAM: phosphatidylglycerophosphatase A; KEGG: cte:CT0336 phosphatidylglycerophosphatase A YP_001999291.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cte:CT0335 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001999292.1 PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; KEGG: cte:CT0334 DNA mismatch binding protein MutS2 YP_001999293.1 PFAM: Na+/H+ antiporter NhaA; KEGG: acr:Acry_3123 Na+/H+ antiporter NhaA YP_001999294.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: cte:CT0333 Doc protein YP_001999295.1 KEGG: cte:CT0332 hypothetical protein YP_001999296.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_001999297.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_001999298.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_001999299.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cte:CT0328 hypothetical protein YP_001999300.1 PFAM: protein of unknown function DUF140; KEGG: cte:CT0327 ABC transport system permease protein YP_001999301.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0326 ABC transporter, ATP-binding protein YP_001999302.1 PFAM: Mammalian cell entry related domain protein; KEGG: cte:CT0325 VpsC protein YP_001999303.1 PFAM: beta-lactamase; KEGG: cte:CT0324 D-alanyl-D-alanine carboxypeptidease YP_001999304.1 KEGG: ter:Tery_2635 hypothetical protein YP_001999305.1 PFAM: amine oxidase; Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cte:CT0323 gamma-carotene desaturase YP_001999306.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: cte:CT0322 iron-sulfur cluster-binding protein YP_001999307.1 PFAM: protein of unknown function DUF456; KEGG: cte:CT0321 hypothetical protein YP_001999308.1 involved in de novo purine biosynthesis YP_001999309.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: cte:CT0319 phosphoribosylglycinamide formyltransferase YP_001999310.1 PFAM: Radical SAM domain protein; KEGG: cte:CT0318 radical activating enzyme YP_001999311.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT0317 glycosyl transferase YP_001999312.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_001999313.1 PFAM: protein of unknown function DUF214; KEGG: cte:CT0315 cell division protein YP_001999314.1 KEGG: cte:CT0314 hypothetical protein YP_001999315.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: cte:CT0313 amidophosphoribosyltransferase YP_001999316.1 KEGG: vpa:VP0236 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_001999317.1 KEGG: cte:CT0312 DnaK suppressor protein YP_001999318.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_001999319.1 KEGG: cte:CT0310 hypothetical protein YP_001999320.1 KEGG: cte:CT0309 mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein YP_001999321.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cte:CT0308 dTDP-glucose 4,6-dehydratase YP_001999322.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: cte:CT0307 dTDP-4-dehydrorhamnose reductase YP_001999323.1 KEGG: cte:CT0306 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_001999324.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cte:CT0305 glucose-1-phosphate thymidylyltransferase YP_001999325.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cte:CT0304 alpha-amylase family protein YP_001999326.1 PFAM: Cytochrome b/b6 domain; KEGG: cte:CT0303 cytochrome b-c complex, cytochrome b subunit YP_001999327.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: cte:CT0302 cytochrome b6-f complex, iron-sulfur subunit YP_001999328.1 PFAM: hydroxyneurosporene synthase; KEGG: cte:CT0301 hydroxyneurosporene synthase CrtC YP_001999329.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001999330.1 KEGG: cte:CT0297 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001999331.1 KEGG: cte:CT0296 hypothetical protein YP_001999332.1 PFAM: histone family protein DNA-binding protein; KEGG: cte:CT0295 DNA-binding protein HU-alpha YP_001999333.1 KEGG: cte:CT0294 hypothetical protein YP_001999334.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001999335.1 KEGG: pvi:Cvib_1510 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001999336.1 KEGG: cte:CT0291 hypothetical protein YP_001999337.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: cte:CT0290 rod shape-determining protein RodA YP_001999338.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001999339.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001999340.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_001999341.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001999342.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_001999343.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001999344.1 these proteins belong to a family of oxidoreductases related to the NADPH-dependent glutamate synthase YP_001999345.1 KEGG: cte:CT0281 hypothetical protein YP_001999346.1 KEGG: cte:CT0280 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; protein of unknown function DUF354 YP_001999347.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cte:CT0279 phosphoglucomutase/phosphomannomutase family protein YP_001999348.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cte:CT0278 RNA polymerase sigma-70 factor, ECF subfamily YP_001999349.1 KEGG: cte:CT0277 hypothetical protein YP_001999350.1 KEGG: cte:CT0276 hypothetical protein YP_001999351.1 KEGG: cte:CT0275 hypothetical protein YP_001999352.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cte:CT0274 carbon-nitrogen hydrolase family protein YP_001999353.1 PFAM: polysaccharide biosynthesis protein; KEGG: cte:CT0273 polysaccharide biosynthesis protein YP_001999354.1 KEGG: cte:CT0272 hypothetical protein YP_001999355.1 KEGG: cte:CT0270 carbohydrate isomerase, KpsF/GutQ family; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_001999357.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: cte:CT0269 succinyl-CoA synthetase alpha chain YP_001999358.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001999359.1 KEGG: cte:CT0267 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_001999360.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: cte:CT0266 bacterial surface antigen family protein YP_001999361.1 PFAM: UvrB/UvrC protein; protein of unknown function DUF151; KEGG: cte:CT0265 hypothetical protein YP_001999362.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001999363.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cte:CT0263 folylpolyglutamate synthase YP_001999364.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001999365.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001999366.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cte:CT0260 phosphoglucomutase/phosphomannomutase family protein YP_001999367.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0259 ABC transporter, ATP-binding protein YP_001999368.1 PFAM: protein of unknown function DUF214; KEGG: cte:CT0258 ABC transporter, integral membrane protein YP_001999369.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_001999370.1 PFAM: Polyprenyl synthetase; KEGG: cte:CT0256 isoprenyl synthetase YP_001999371.1 KEGG: cte:CT0255 DprA/SMF protein, DNA processing factor; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; SMART: Helix-hairpin-helix DNA-binding class 1 YP_001999372.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: cte:CT0254 outer membrane protein OmpH YP_001999373.1 PFAM: protein of unknown function DUF1239; KEGG: cte:CT0253 hypothetical protein YP_001999374.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_001999375.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Nucleotidyl transferase; KEGG: cte:CT0251 UDP-N-acetylglucosamine pyrophosphorylase YP_001999376.1 PFAM: phosphofructokinase; KEGG: cte:CT0250 6-phosphofructokinase YP_001999377.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cte:CT0249 glutathione S-transferase, fosfomycin resistance protein YP_001999378.1 KEGG: cte:CT0248 hypothetical protein YP_001999379.1 Essential for recycling GMP and indirectly, cGMP YP_001999380.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: cte:CT0246 hypothetical protein YP_001999381.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001999382.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: cte:CT0244 riboflavin biosynthesis protein RibF YP_001999383.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: cte:CT0243 tRNA pseudouridine synthase B YP_001999384.1 PFAM: ribosome-binding factor A; KEGG: cte:CT0242 ribosome-binding factor A YP_001999385.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_001999386.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001999387.1 PFAM: protein of unknown function DUF150; KEGG: cte:CT0239 hypothetical protein YP_001999388.1 KEGG: cch:Cag_1465 hypothetical protein YP_001999389.1 PFAM: glutaredoxin 2; KEGG: cte:CT0237 hypothetical protein YP_001999390.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001999391.1 TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: cte:CT0235 PTS system, IIA component YP_001999392.1 PFAM: phosphatidate cytidylyltransferase; KEGG: cte:CT0233 phosphatidate cytidylyltransferase YP_001999393.1 PFAM: Abortive infection protein; KEGG: cte:CT0232 hypothetical protein YP_001999394.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cte:CT0230 NAD-dependent epimerase/dehydratase family protein YP_001999395.1 PFAM: glycosyl transferase group 1; KEGG: pvi:Cvib_0692 glycosyl transferase, group 1 YP_001999396.1 PFAM: glycosyl transferase group 1; KEGG: cte:CT0225 glycosyl transferase YP_001999397.1 PFAM: glycosyl transferase group 1; KEGG: cte:CT0224 glycosyl transferase YP_001999398.1 PFAM: glycosyl transferase family 9; KEGG: plt:Plut_1791 heptosyltransferase YP_001999399.1 PFAM: glycosyl transferase family 9; KEGG: cte:CT0221 heptosyltransferase YP_001999400.1 KEGG: bca:BCE_5388 hypothetical protein YP_001999403.1 PFAM: glycosyl transferase group 1; KEGG: cte:CT0219 glycosyl transferase YP_001999404.1 KEGG: pvi:Cvib_0691 hypothetical protein YP_001999405.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0353 ABC transporter related YP_001999406.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_2332 glycosyl transferase, family 2 YP_001999407.1 KEGG: mem:Memar_1469 glycosyl transferase, family 39 YP_001999408.1 KEGG: mes:Meso_0083 hypothetical protein YP_001999409.1 PFAM: glycosyl transferase family 2; KEGG: mst:Msp_0493 predicted glycosyltransferase YP_001999410.1 KEGG: xau:Xaut_3927 hypothetical protein YP_001999411.1 KEGG: cte:CT0212 hypothetical protein YP_001999412.1 PFAM: glycosyl transferase family 9; KEGG: sfu:Sfum_0370 lipopolysaccharide heptosyltransferase III YP_001999413.1 PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_0357 glycosyl transferase, group 1 YP_001999414.1 PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_0358 glycosyl transferase, group 1 YP_001999415.1 KEGG: ret:RHE_CH00749 probable hemolysin protein YP_001999416.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: cte:CT0211 acyltransferase, HtrB/MsbB family YP_001999417.1 TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: cte:CT0209 cytidylyltransferase family protein YP_001999418.1 KEGG: cte:CT0208 hypothetical protein YP_001999419.1 KEGG: cte:CT0207 pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_001999420.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: cte:CT0206 DNA polymerase bacteriophage-type YP_001999421.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: cte:CT0205 replicative DNA helicase YP_001999422.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: cte:CT0204 phosphoenolpyruvate-protein phosphotransferase YP_001999423.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cte:CT0203 peptidyl-prolyl cis-trans isomerase, PpiC-type YP_001999424.1 KEGG: cte:CT0202 protein-L-isoaspartate (D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001999425.1 KEGG: cte:CT0201 hypothetical protein YP_001999426.1 KEGG: cte:CT0200 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001999427.1 TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; KEGG: cte:CT0199 thiamine-monophosphate kinase YP_001999428.1 PFAM: regulatory protein MarR; KEGG: gme:Gmet_0359 transcriptional regulator, MarR family YP_001999429.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: gme:Gmet_2060 fusaric acid resistance protein conserved region YP_001999430.1 PFAM: major facilitator superfamily MFS_1; KEGG: cte:CT0198 MFS transporter family protein YP_001999431.1 PFAM: protein of unknown function DUF347; KEGG: cte:CT0197 hypothetical protein YP_001999432.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cte:CT0195 sensor histidine kinase YP_001999433.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cte:CT0194 DNA-binding response regulator YP_001999434.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: cte:CT0193 hypothetical protein YP_001999436.1 KEGG: cph:Cpha266_0265 hypothetical protein YP_001999437.1 KEGG: cph:Cpha266_0264 hypothetical protein YP_001999438.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_001999439.1 PFAM: surface antigen msp4 family protein; KEGG: cph:Cpha266_0396 hypothetical protein YP_001999440.1 PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cte:CT0191 ATP-dependent Clp protease, ATP-binding subunit ClpC YP_001999441.1 KEGG: cte:CT0190 hypothetical protein YP_001999442.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: cte:CT0189 hypothetical protein YP_001999444.1 PFAM: Radical SAM domain protein; KEGG: mja:MJ0907 chondro-6-sulfatase regulatory protein isolog YP_001999445.1 PFAM: protein of unknown function DUF181; KEGG: cpy:Cphy_3580 protein of unknown function DUF181 YP_001999446.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ppd:Ppro_2577 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase YP_001999447.1 KEGG: cte:CT0188 C-type cytochrome YP_001999448.1 PFAM: beta-lactamase domain protein; KEGG: cte:CT0187 hypothetical protein YP_001999449.1 KEGG: cte:CT0186 hypothetical protein YP_001999450.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: cte:CT0185 glycerol kinase YP_001999451.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0184 ABC-type drug export system, ATP-binding protein YP_001999452.1 PFAM: ABC-2 type transporter; KEGG: cte:CT0183 ABC-type drug export system, membrane protein YP_001999453.1 KEGG: cte:CT0182 hypothetical protein YP_001999454.1 PFAM: Radical SAM domain protein; KEGG: cte:CT0181 hypothetical protein YP_001999455.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cte:CT0180 lycopene cyclase YP_001999456.1 PFAM: transcription activator effector binding; KEGG: cte:CT0179 hypothetical protein YP_001999457.1 PFAM: SNARE associated Golgi protein; KEGG: cte:CT0178 DedA protein YP_001999458.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT0177 proline iminopeptidase YP_001999459.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cte:CT0176 penicillin-binding protein 1 YP_001999460.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001999461.1 KEGG: cph:Cpha266_0299 DNA helicase YP_001999462.1 KEGG: cte:CT0173 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3 YP_001999463.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT0168 ferredoxin, 4Fe-4S YP_001999464.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pvi:Cvib_1592 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001999465.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001999466.1 KEGG: cte:CT0164 hypothetical protein YP_001999467.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: pvi:Cvib_1597 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_001999468.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_001999469.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_001999470.1 PFAM: histone family protein DNA-binding protein; KEGG: cte:CT0160 DNA-binding protein HU-beta YP_001999471.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001999472.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cte:CT0158 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001999473.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: cte:CT0157 acetyl-CoA carboxylase, biotin carboxylase YP_001999474.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001999475.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001999476.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001999477.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001999478.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001999479.1 binds directly to 23S ribosomal RNA YP_001999480.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KEGG: cte:CT0150 transcription antitermination protein NusG YP_001999481.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_001999482.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cte:CT0148 oxidoreductase, short-chain dehydrogenase/reductase family YP_001999483.1 KEGG: cte:CT0147 GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein YP_001999484.1 PFAM: Septum formation initiator; KEGG: cte:CT0146 hypothetical protein YP_001999485.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001999486.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001999487.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT2018 dolichol-phosphate mannosyltransferase YP_001999488.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT2019 photosystem P840 reaction center iron-sulfur protein YP_001999489.1 KEGG: cte:CT2020 photosystem P840 reaction center, large subunit YP_001999490.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001999491.1 PFAM: Radical SAM domain protein; KEGG: cte:CT2022 pyruvate-formate-lyase-activating enzyme YP_001999492.1 PFAM: protein of unknown function DUF52; KEGG: lpn:lpg1169 hypothetical protein YP_001999493.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: cte:CT2023 glutamate dehydrogenase YP_001999494.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cte:CT2024 rubredoxin YP_001999495.1 TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: cte:CT2025 monofunctional biosynthetic peptidoglycan transglycosylase YP_001999496.1 PFAM: cytochrome c class I; KEGG: cte:CT2026 C-type cytochrome YP_001999497.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: cte:CT2028 DNA mismatch repair protein MutL YP_001999498.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cte:CT2029 competence/damage-inducible protein CinA YP_001999499.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_001999500.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit YP_001999501.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001999502.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_001999503.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001999504.1 KEGG: cte:CT2036 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase YP_001999505.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001999506.1 TIGRFAM: phosphoheptose isomerase; KEGG: cte:CT2038 phosphoheptose isomerase YP_001999507.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_001999508.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: cte:CT2040 succinate/fumarate oxidoreductase YP_001999509.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: cte:CT2041 succinate/fumarate oxidoreductase, iron-sulfur protein YP_001999510.1 KEGG: cte:CT2042 succinate/fumarate oxidoreductase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001999511.1 PFAM: CBS domain containing protein; KEGG: cte:CT2044 CBS domain protein YP_001999512.1 PFAM: beta-lactamase domain protein; KEGG: cte:CT2045 hydroxyacylglutathione hydrolase YP_001999513.1 KEGG: plt:Plut_1998 hypothetical protein YP_001999514.1 PFAM: acriflavin resistance protein; KEGG: pvi:Cvib_1642 acriflavin resistance protein YP_001999515.1 KEGG: pvi:Cvib_1643 hypothetical protein YP_001999516.1 PFAM: outer membrane efflux protein; KEGG: cte:CT2049 LipD protein YP_001999517.1 PFAM: protein of unknown function DUF156; KEGG: cte:CT2050 hypothetical protein YP_001999518.1 KEGG: cte:CT2051 hypothetical protein YP_001999519.1 KEGG: cte:CT2052 hypothetical protein YP_001999520.1 KEGG: cte:CT2054 chlorosome envelope protein B YP_001999521.1 PFAM: aminoglycoside phosphotransferase; KEGG: cte:CT2055 hypothetical protein YP_001999522.1 PFAM: Nucleotidyl transferase; KEGG: cte:CT2056 mannose-1-phosphate guanylyltransferase YP_001999523.1 PFAM: conserved hypothetical protein; KEGG: cte:CT2057 hypothetical protein YP_001999524.1 PFAM: Na+/solute symporter; KEGG: cte:CT2058 sodium:solute symporter family protein YP_001999525.1 PFAM: response regulator receiver; KEGG: cte:CT2059 response regulator YP_001999526.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; KEGG: cte:CT2060 sensory box histidine kinase/response regulator YP_001999527.1 PFAM: response regulator receiver; KEGG: cte:CT2061 response regulator YP_001999528.1 PFAM: bacteriochlorophyll C binding protein; KEGG: cte:CT2062 chlorosome envelope protein E YP_001999529.1 KEGG: cte:CT2064 chlorosome envelope protein D YP_001999530.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; NmrA family protein; KEGG: cte:CT2065 hypothetical protein YP_001999531.1 PFAM: pentapeptide repeat protein; KEGG: cte:CT2067 pentapeptide repeat family protein YP_001999532.1 KEGG: pvi:Cvib_1657 hypothetical protein YP_001999533.1 KEGG: cte:CT2069 hypothetical protein YP_001999534.1 KEGG: cte:CT2070 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001999535.1 SMART: PAS domain containing protein; KEGG: cte:CT2071 hypothetical protein YP_001999536.1 PFAM: K potassium transporter; KEGG: cte:CT2073 Kup system potassium uptake protein YP_001999537.1 PFAM: K potassium transporter; KEGG: cte:CT2073 Kup system potassium uptake protein YP_001999538.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cte:CT2075 TPR domain protein YP_001999539.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: cte:CT2077 rare lipoprotein A YP_001999540.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cph:Cpha266_0756 PHP C-terminal domain protein YP_001999541.1 KEGG: cph:Cpha266_1071 hypothetical protein YP_001999542.1 KEGG: cch:Cag_0272 hypothetical protein YP_001999543.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nmu:Nmul_A1634 hypothetical protein YP_001999544.1 PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: cte:CT2083 hypothetical protein YP_001999545.1 PFAM: band 7 protein; KEGG: pvi:Cvib_1667 SPFH domain, band 7 family protein YP_001999546.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: cps:CPS_3101 endo/excinuclease amino terminal domain protein YP_001999547.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001999548.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cte:CT2085 oxidoreductase, short-chain dehydrogenase/reductase family YP_001999549.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_001999551.1 PFAM: phospholipase/Carboxylesterase; KEGG: cte:CT2087 esterase/lipase YP_001999552.1 KEGG: cte:CT2088 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001999553.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cte:CT2089 alpha-amylase family protein YP_001999554.1 PFAM: Cache type 2 domain protein; KEGG: gur:Gura_3066 cache, type 2 domain protein YP_001999555.1 PFAM: metallophosphoesterase; KEGG: cte:CT2092 hypothetical protein YP_001999556.1 KEGG: vco:VC0395_0355 hypothetical protein YP_001999557.1 PFAM: response regulator receiver; KEGG: pvi:Cvib_0888 two component transcriptional regulator, winged helix family YP_001999558.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: cte:CT2095 UDP-N-acetylglucosamine 2-epimerase YP_001999559.1 KEGG: cte:CT2096 hypothetical protein YP_001999560.1 PFAM: AAA ATPase central domain protein; Clp domain protein; SMART: AAA ATPase; KEGG: cte:CT2281 ATP-dependent Clp protease, ATP-binding subunit ClpB YP_001999561.1 KEGG: cte:CT2280 hypothetical protein YP_001999562.1 KEGG: cph:Cpha266_2456 hypothetical protein YP_001999563.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001999564.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: cte:CT0065 preprotein translocase YajC subunit YP_001999565.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001999566.1 PFAM: surface antigen msp4 family protein; porin opacity type; KEGG: cte:CT0068 hemagglutinin-related protein YP_001999567.1 PFAM: surface antigen msp4 family protein; porin opacity type; KEGG: cte:CT0068 hemagglutinin-related protein YP_001999568.1 PFAM: surface antigen msp4 family protein; porin opacity type; KEGG: cte:CT0068 hemagglutinin-related protein YP_001999569.1 PFAM: aminotransferase class V; KEGG: cte:CT0070 aminotransferase, class V YP_001999570.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT0072 BchE/P-methylase family protein YP_001999571.1 PFAM: cytochrome c class I; KEGG: plt:Plut_0153 cytochrome c-555, membrane-bound YP_001999572.1 PFAM: cytochrome c class I; KEGG: cte:CT0075 cytochrome c-555 YP_001999573.1 KEGG: cte:CT0076 hypothetical protein YP_001999574.1 KEGG: cte:CT0077 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_001999575.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cte:CT0079 glycerophosphoryl diester phosphodiesterase YP_001999576.1 KEGG: cte:CT0080 hypothetical protein YP_001999577.1 KEGG: cte:CT0081 Ric1 protein YP_001999578.1 KEGG: bvi:Bcep1808_6122 nucleotide-binding protein containing TIR -like domain-like YP_001999579.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: cte:CT0082 Holliday junction resolvase YP_001999580.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001999581.1 PFAM: Prephenate dehydrogenase; KEGG: cte:CT0084 prephenate dehydrogenase YP_001999582.1 PFAM: ATP-NAD/AcoX kinase; KEGG: cte:CT0085 NAD+ kinase YP_001999583.1 KEGG: cte:CT0086 hypothetical protein YP_001999584.1 KEGG: cte:CT0087 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_001999585.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_001999586.1 PFAM: ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cte:CT0089 ATP-dependent Clp protease, ATP-binding subunit ClpB YP_001999587.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cte:CT0090 glycosyl hydrolase, family 3 YP_001999588.1 PFAM: Phosphoglycerate mutase; KEGG: cte:CT0091 phosphohistidine phosphatase SixA YP_001999589.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001999590.1 PFAM: protein of unknown function DUF205; KEGG: cte:CT0093 hypothetical protein YP_001999591.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001999592.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive YP_001999593.1 PFAM: NLP/P60 protein; KEGG: cte:CT0097 NLP/P60 family protein YP_001999594.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_001999595.1 PFAM: Ppx/GppA phosphatase; KEGG: cte:CT0099 exopolyphosphatase YP_001999596.1 KEGG: deh:cbdb_A1644 hypothetical protein YP_001999597.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cte:CT0046 long-chain fatty-acid-CoA ligase YP_001999598.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: cte:CT0047 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001999599.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_001999600.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT0049 biotin synthesis protein YP_001999601.1 PFAM: protein of unknown function DUF452; KEGG: cte:CT0050 hypothetical protein YP_001999602.1 KEGG: cte:CT0051 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II YP_001999603.1 KEGG: cte:CT0052 biotin synthetase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_001999604.1 KEGG: cte:CT0053 BirA bifunctional protein; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein YP_001999605.1 PFAM: cell wall hydrolase/autolysin; KEGG: cte:CT0054 N-acetylmuramoyl-L-alanine amidase YP_001999606.1 KEGG: cte:CT0055 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein YP_001999607.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: cte:CT0056 ferrous iron transport protein B YP_001999608.1 PFAM: FeoA family protein; KEGG: cte:CT0057 ferrous iron transport protein A YP_001999609.1 PFAM: histidine triad (HIT) protein; KEGG: cte:CT0058 Hit family protein YP_001999610.1 KEGG: cte:CT0059 hypothetical protein YP_001999611.1 KEGG: cte:CT0060 hypothetical protein YP_001999612.1 PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT2266 succinate dehydrogenase, iron-sulfur protein YP_001999613.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001999614.1 TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: cte:CT2268 succinate dehydrogenase, cytochrome subunit YP_001999615.1 PFAM: cyclase family protein; KEGG: cte:CT2269 hypothetical protein YP_001999616.1 KEGG: cte:CT2270 hypothetical protein YP_001999617.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: cte:CT2271 lysophospholipase L2 YP_001999618.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: cte:CT2273 rare lipoprotein A YP_001999619.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cch:Cag_0596 acetyltransferase, GNAT family YP_001999620.1 PFAM: protein of unknown function DUF89; KEGG: cph:Cpha266_1577 protein of unknown function DUF89 YP_001999622.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: cph:Cpha266_1368 Na+/Ca+ antiporter, CaCA family YP_001999623.1 PFAM: amino acid permease-associated region; KEGG: mbu:Mbur_0069 amino acid transporter YP_001999624.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1748 methlytransferase, UbiE/COQ5 family YP_001999625.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT1749 MoaA/NifB/PqqE family protein YP_001999626.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cph:Cpha266_0244 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001999627.1 KEGG: nwi:Nwi_3090 hypothetical protein YP_001999628.1 KEGG: aoe:Clos_0781 hypothetical protein YP_001999629.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_001999630.1 transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine YP_001999631.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001999632.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cte:CT0014 hydrolase, haloacid dehalogenase-like family YP_001999633.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001999634.1 TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: cte:CT0016 nicotinate-nucleotide adenyltransferase YP_001999635.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: cte:CT0017 lipoprotein YP_001999636.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001999637.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_001999638.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: plt:Plut_2097 ATP synthase F0, C subunit YP_001999639.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0 YP_001999640.1 KEGG: plt:Plut_2099 hypothetical protein YP_001999641.1 KEGG: cte:CT0023 hypothetical protein YP_001999642.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cte:CT0024 UDP-glucose 4-epimerase YP_001999643.1 PFAM: protein of unknown function DUF152; KEGG: cte:CT0026 conserved hypothetical protein YP_001999644.1 KEGG: cte:CT0027 hypothetical protein YP_001999645.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: cte:CT0029 4-hydroxybutyrate coenzyme A transferase YP_001999646.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_001999647.1 PFAM: cell division protein FtsA; KEGG: cte:CT0031 cell division protein FtsA YP_001999648.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: cte:CT0032 FtsQ protein YP_001999649.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001999650.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001999651.1 PFAM: cell cycle protein; KEGG: cte:CT0035 cell division protein, FtsW/RodA/SpoVE family YP_001999652.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cte:CT0036 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_001999653.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001999654.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cte:CT0038 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase YP_001999655.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cte:CT0039 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001999656.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: cte:CT0040 penicillin-binding protein 3 YP_001999657.1 KEGG: cte:CT0041 hypothetical protein YP_001999658.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: cte:CT0042 S-adenosyl-methyltransferase YP_001999659.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_001999660.1 KEGG: cte:CT2225 hypothetical protein YP_001999661.1 PFAM: Chorismate mutase; KEGG: cte:CT2224 chorismate mutase YP_001999662.1 PFAM: aminodeoxychorismate lyase; KEGG: cte:CT2223 hypothetical protein YP_001999663.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001999664.1 PFAM: Rhomboid family protein; KEGG: cte:CT2221 hypothetical protein YP_001999665.1 PFAM: protein of unknown function DUF1232; KEGG: cte:CT2220 hypothetical protein YP_001999666.1 PFAM: Appr-1-p processing domain protein; KEGG: cte:CT2219 histone macro-H2A1-related protein YP_001999667.1 KEGG: cph:Cpha266_2106 hypothetical protein YP_001999668.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: cte:CT0009 RNA methyltransferase, TrmA family YP_001999669.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: cte:CT0007 PAP2 superfamily protein YP_001999670.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: cte:CT0006 Oxa1/60 kDa IMP family protein YP_001999671.1 PFAM: protein of unknown function DUF37; KEGG: cte:CT0005 hypothetical protein YP_001999672.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates