-- dump date 20140619_041040 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 290315000001 SEQ_END SEQ_END NC_010803.1 2763181 2763181 DR NC_010803.1; contig end 2763181..2763181 Chlorobium limicola DSM 245 YP_001942088.1 CDS dnaA NC_010803.1 162 1637 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 162..1637 Chlorobium limicola DSM 245 6355107 YP_001942089.1 CDS Clim_0002 NC_010803.1 1930 3054 D KEGG: plt:Plut_0001 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 1930..3054 Chlorobium limicola DSM 245 6354916 YP_001942090.1 CDS Clim_0003 NC_010803.1 3071 4162 D TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: plt:Plut_0002 RecF protein; DNA replication and repair protein RecF 3071..4162 Chlorobium limicola DSM 245 6354917 YP_001942091.1 CDS Clim_0004 NC_010803.1 4159 4467 D KEGG: cch:Cag_2009 hypothetical protein; hypothetical protein 4159..4467 Chlorobium limicola DSM 245 6354918 YP_001942092.1 CDS Clim_0005 NC_010803.1 4546 5769 R PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: cph:Cpha266_0026 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(4546..5769) Chlorobium limicola DSM 245 6354919 YP_001942093.1 CDS Clim_0006 NC_010803.1 6005 8386 R PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B; KEGG: cph:Cpha266_0027 DNA polymerase B region; cyclic nucleotide-binding protein complement(6005..8386) Chlorobium limicola DSM 245 6354920 YP_001942094.1 CDS Clim_0007 NC_010803.1 8448 10313 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(8448..10313) Chlorobium limicola DSM 245 6354921 YP_001942095.1 CDS Clim_0008 NC_010803.1 10832 11302 D KEGG: cph:Cpha266_0029 thiosulfate-binding protein SoxY; thiosulfate-binding protein SoxY 10832..11302 Chlorobium limicola DSM 245 6354922 YP_001942096.1 CDS Clim_0009 NC_010803.1 11339 11635 D PFAM: Sulphur oxidation protein SoxZ; KEGG: cph:Cpha266_0030 sulfur oxidation protein SoxZ; sulfur oxidation protein SoxZ 11339..11635 Chlorobium limicola DSM 245 6354923 YP_001942097.1 CDS Clim_0010 NC_010803.1 11700 12071 D PFAM: cytochrome c class I; KEGG: pvi:Cvib_0008 sulfide dehydrogenase (flavocytochrome), cytochrome c subunit; cytochrome c class I 11700..12071 Chlorobium limicola DSM 245 6354924 YP_001942098.1 CDS Clim_0011 NC_010803.1 12087 13379 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: cph:Cpha266_0032 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; Flavocytochrome c sulfide dehydrogenase 12087..13379 Chlorobium limicola DSM 245 6354925 YP_001942099.1 CDS secD NC_010803.1 13548 15371 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 13548..15371 Chlorobium limicola DSM 245 6354926 YP_001942100.1 CDS secF NC_010803.1 15393 16328 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 15393..16328 Chlorobium limicola DSM 245 6354927 YP_001942101.1 CDS Clim_0014 NC_010803.1 16388 17701 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: cph:Cpha266_0035 PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain 16388..17701 Chlorobium limicola DSM 245 6354928 YP_001942102.1 CDS Clim_0015 NC_010803.1 17690 19621 R KEGG: cph:Cpha266_0036 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B complement(17690..19621) Chlorobium limicola DSM 245 6354929 YP_001942103.1 CDS Clim_0016 NC_010803.1 19711 20100 R PFAM: protein of unknown function UPF0102; KEGG: cph:Cpha266_0037 hypothetical protein; hypothetical protein complement(19711..20100) Chlorobium limicola DSM 245 6354930 YP_001942104.1 CDS rnhB NC_010803.1 20113 21012 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(20113..21012) Chlorobium limicola DSM 245 6354931 YP_001942105.1 CDS Clim_0018 NC_010803.1 21239 22939 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cph:Cpha266_0040 ribonuclease, Rne/Rng family; ribonuclease, Rne/Rng family 21239..22939 Chlorobium limicola DSM 245 6354932 YP_001942106.1 CDS dapD NC_010803.1 22958 23821 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 22958..23821 Chlorobium limicola DSM 245 6354933 YP_001942107.1 CDS Clim_0020 NC_010803.1 23941 25638 D KEGG: cph:Cpha266_0042 C-terminal processing peptidase-3. Serine peptidase. MEROPS family S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 23941..25638 Chlorobium limicola DSM 245 6354934 YP_001942108.1 CDS Clim_0021 NC_010803.1 25618 26331 R KEGG: cph:Cpha266_0043 hypothetical protein; hypothetical protein complement(25618..26331) Chlorobium limicola DSM 245 6354935 YP_001942109.1 CDS Clim_0022 NC_010803.1 26395 27537 R TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: cch:Cag_0035 geranylgeranyl reductase; geranylgeranyl reductase complement(26395..27537) Chlorobium limicola DSM 245 6354936 YP_001942110.1 CDS Clim_0023 NC_010803.1 27581 29050 R Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase complement(27581..29050) Chlorobium limicola DSM 245 6354937 YP_001942111.1 CDS Clim_0024 NC_010803.1 29193 29717 D KEGG: pvi:Cvib_0150 hypothetical protein; hypothetical protein 29193..29717 Chlorobium limicola DSM 245 6354938 YP_001942112.1 CDS Clim_0025 NC_010803.1 29775 30212 D KEGG: pvi:Cvib_0150 hypothetical protein; hypothetical protein 29775..30212 Chlorobium limicola DSM 245 6354939 YP_001942113.1 CDS Clim_0026 NC_010803.1 30422 30730 R PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: plt:Plut_0018 hypothetical protein; ATP-dependent Clp protease adaptor protein ClpS complement(30422..30730) Chlorobium limicola DSM 245 6354259 YP_001942114.1 CDS Clim_0027 NC_010803.1 30825 31787 R PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: cph:Cpha266_0047 muramoyltetrapeptide carboxypeptidase; Muramoyltetrapeptide carboxypeptidase complement(30825..31787) Chlorobium limicola DSM 245 6355549 YP_001942115.1 CDS Clim_0028 NC_010803.1 31832 32098 R PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: plt:Plut_0020 ATP synthase F1, epsilon subunit; H+transporting two-sector ATPase delta/subunit epsilon complement(31832..32098) Chlorobium limicola DSM 245 6355550 YP_001942116.1 CDS Clim_0029 NC_010803.1 32115 33503 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(32115..33503) Chlorobium limicola DSM 245 6355551 YP_001942117.1 CDS Clim_0030 NC_010803.1 33880 34419 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cch:Cag_2013 thiol:disulfide interchange protein, thioredoxin family protein; redoxin domain-containing protein 33880..34419 Chlorobium limicola DSM 245 6355553 YP_001942118.1 CDS Clim_0031 NC_010803.1 34568 36433 D catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 34568..36433 Chlorobium limicola DSM 245 6355554 YP_001942119.1 CDS Clim_0032 NC_010803.1 36820 38220 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: cph:Cpha266_0843 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 36820..38220 Chlorobium limicola DSM 245 6355555 YP_001942120.1 CDS Clim_0033 NC_010803.1 38307 38537 R PFAM: protein of unknown function DUF1458; KEGG: cte:CT2229 hypothetical protein; hypothetical protein complement(38307..38537) Chlorobium limicola DSM 245 6355556 YP_001942121.1 CDS Clim_0034 NC_010803.1 39191 40744 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Polysulphide reductase NrfD; KEGG: cph:Cpha266_0119 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 39191..40744 Chlorobium limicola DSM 245 6355557 YP_001942122.1 CDS Clim_0035 NC_010803.1 40764 43625 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cph:Cpha266_0120 formate dehydrogenase; molydopterin dinucleotide-binding region 40764..43625 Chlorobium limicola DSM 245 6355558 YP_001942123.1 CDS Clim_0036 NC_010803.1 43734 44690 D PFAM: protein of unknown function DUF81; KEGG: pvi:Cvib_0032 protein of unknown function DUF81; hypothetical protein 43734..44690 Chlorobium limicola DSM 245 6355559 YP_001942124.1 CDS Clim_0037 NC_010803.1 44687 45103 D KEGG: cph:Cpha266_0122 hypothetical protein; hypothetical protein 44687..45103 Chlorobium limicola DSM 245 6355560 YP_001942125.1 CDS Clim_0038 NC_010803.1 45263 45499 D PFAM: SirA family protein; KEGG: plt:Plut_0033 hypothetical protein; SirA family protein 45263..45499 Chlorobium limicola DSM 245 6355561 YP_001942126.1 CDS Clim_0039 NC_010803.1 45514 46023 D KEGG: cch:Cag_1961 hypothetical protein; hypothetical protein 45514..46023 Chlorobium limicola DSM 245 6355562 YP_001942127.1 CDS Clim_0040 NC_010803.1 46395 46637 D hypothetical protein 46395..46637 Chlorobium limicola DSM 245 6355563 YP_001942128.1 CDS Clim_0041 NC_010803.1 46674 48521 R KEGG: cph:Cpha266_0053 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ complement(46674..48521) Chlorobium limicola DSM 245 6355564 YP_001942129.1 CDS Clim_0042 NC_010803.1 48872 49387 R KEGG: rci:RCIX2578 hypothetical protein; hypothetical protein complement(48872..49387) Chlorobium limicola DSM 245 6355565 YP_001942130.1 CDS Clim_0043 NC_010803.1 49524 50258 D PFAM: regulatory protein TetR; KEGG: cph:Cpha266_0060 TetR family transcriptional regulator; TetR family transcriptional regulator 49524..50258 Chlorobium limicola DSM 245 6355566 YP_001942131.1 CDS Clim_0044 NC_010803.1 50271 50735 D KEGG: cph:Cpha266_0061 transmembrane protein; transmembrane protein 50271..50735 Chlorobium limicola DSM 245 6355567 YP_001942132.1 CDS Clim_0045 NC_010803.1 50732 52027 D KEGG: cph:Cpha266_0062 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 50732..52027 Chlorobium limicola DSM 245 6355568 YP_001942133.1 CDS Clim_0046 NC_010803.1 52218 52694 D KEGG: cph:Cpha266_0064 hypothetical protein; hypothetical protein 52218..52694 Chlorobium limicola DSM 245 6355569 YP_001942134.1 CDS Clim_0047 NC_010803.1 52813 53358 R KEGG: fgr:FG06081.1 hypothetical protein; hypothetical protein complement(52813..53358) Chlorobium limicola DSM 245 6355570 YP_001942135.1 CDS Clim_0048 NC_010803.1 53452 54261 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tbd:Tbd_2169 hypothetical protein; type 11 methyltransferase complement(53452..54261) Chlorobium limicola DSM 245 6355571 YP_001942136.1 CDS Clim_0049 NC_010803.1 54740 55054 D hypothetical protein 54740..55054 Chlorobium limicola DSM 245 6355572 YP_001942137.1 CDS Clim_0050 NC_010803.1 55088 55687 R KEGG: cph:Cpha266_0751 hypothetical protein; hypothetical protein complement(55088..55687) Chlorobium limicola DSM 245 6355573 YP_001942138.1 CDS Clim_0051 NC_010803.1 55694 56599 R PFAM: PASTA domain containing protein; KEGG: cph:Cpha266_0750 PASTA domain containing protein; protein PASTA domain-containing protein complement(55694..56599) Chlorobium limicola DSM 245 6355574 YP_001942139.1 CDS Clim_0052 NC_010803.1 56965 59643 D KEGG: cph:Cpha266_0063 hypothetical protein; hypothetical protein 56965..59643 Chlorobium limicola DSM 245 6355575 YP_001942140.1 CDS Clim_0054 NC_010803.1 60329 61579 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cph:Cpha266_0073 DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein 60329..61579 Chlorobium limicola DSM 245 6355577 YP_001942141.1 CDS Clim_0055 NC_010803.1 61572 62210 D KEGG: sat:SYN_02435 hypothetical cytosolic protein; hypothetical protein 61572..62210 Chlorobium limicola DSM 245 6355578 YP_001942142.1 CDS Clim_0056 NC_010803.1 62224 64206 R KEGG: pol:Bpro_0004 hypothetical protein; hypothetical protein complement(62224..64206) Chlorobium limicola DSM 245 6355579 YP_001942143.1 CDS Clim_0057 NC_010803.1 64216 64596 R hypothetical protein complement(64216..64596) Chlorobium limicola DSM 245 6355580 YP_001942144.1 CDS Clim_0058 NC_010803.1 64725 64904 R KEGG: cph:Cpha266_0084 hypothetical protein; hypothetical protein complement(64725..64904) Chlorobium limicola DSM 245 6355581 YP_001942145.1 CDS Clim_0059 NC_010803.1 64972 65916 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: cph:Cpha266_0085 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase complement(64972..65916) Chlorobium limicola DSM 245 6355582 YP_001942146.1 CDS Clim_0061 NC_010803.1 66458 67396 R KEGG: cph:Cpha266_0086 hypothetical protein; hypothetical protein complement(66458..67396) Chlorobium limicola DSM 245 6355584 YP_001942147.1 CDS Clim_0062 NC_010803.1 67692 69014 D PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: cph:Cpha266_0087 major facilitator superfamily MFS_1; major facilitator superfamily protein 67692..69014 Chlorobium limicola DSM 245 6355585 YP_001942148.1 CDS Clim_0063 NC_010803.1 69168 69746 R KEGG: cph:Cpha266_0088 hypothetical protein; hypothetical protein complement(69168..69746) Chlorobium limicola DSM 245 6355586 YP_001942149.1 CDS Clim_0064 NC_010803.1 69809 70216 R KEGG: cph:Cpha266_0089 Gifsy-1 prophage protein; Gifsy-1 prophage protein complement(69809..70216) Chlorobium limicola DSM 245 6355587 YP_001942150.1 CDS Clim_0065 NC_010803.1 70582 71115 D TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: cph:Cpha266_0090 methionine-R-sulfoxide reductase; methionine-R-sulfoxide reductase 70582..71115 Chlorobium limicola DSM 245 6355588 YP_001942151.1 CDS Clim_0066 NC_010803.1 71112 71240 R KEGG: cph:Cpha266_0091 twitching mobility protein PilT; twitching mobility protein PilT complement(71112..71240) Chlorobium limicola DSM 245 6355589 YP_001942152.1 CDS Clim_0067 NC_010803.1 71237 71515 R PFAM: SpoVT/AbrB domain protein; KEGG: cph:Cpha266_0092 virulence associated protein B; SpoVT/AbrB domain-containing protein complement(71237..71515) Chlorobium limicola DSM 245 6355590 YP_001942153.1 CDS Clim_0068 NC_010803.1 71573 73159 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cph:Cpha266_0093 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter complement(71573..73159) Chlorobium limicola DSM 245 6355591 YP_001942154.1 CDS Clim_0069 NC_010803.1 73156 74151 R PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_0094 secretion protein HlyD family protein; secretion protein HlyD family protein complement(73156..74151) Chlorobium limicola DSM 245 6355592 YP_001942155.1 CDS Clim_0070 NC_010803.1 74151 74624 R PFAM: UspA domain protein; KEGG: cph:Cpha266_0095 UspA domain protein; UspA domain-containing protein complement(74151..74624) Chlorobium limicola DSM 245 6355593 YP_001942156.1 CDS Clim_0071 NC_010803.1 74626 75951 R PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0096 outer membrane efflux protein; outer membrane efflux protein complement(74626..75951) Chlorobium limicola DSM 245 6355594 YP_001942157.1 CDS Clim_0072 NC_010803.1 76218 78302 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cph:Cpha266_0097 DNA-binding protein fis / Fis family transcriptional regulator; ATPase AAA 76218..78302 Chlorobium limicola DSM 245 6355595 YP_001942158.1 CDS Clim_0073 NC_010803.1 78710 79903 R PFAM: aminotransferase class I and II; KEGG: cte:CT0110 aminotransferase, class I; GntR family transcriptional regulator complement(78710..79903) Chlorobium limicola DSM 245 6355596 YP_001942159.1 CDS Clim_0074 NC_010803.1 79968 80396 R PFAM: amino acid-binding ACT domain protein; KEGG: cph:Cpha266_1971 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein complement(79968..80396) Chlorobium limicola DSM 245 6355597 YP_001942160.1 CDS Clim_0075 NC_010803.1 80414 81715 R KEGG: cph:Cpha266_1968 phenylacetate-CoA ligase; phenylacetate--CoA ligase complement(80414..81715) Chlorobium limicola DSM 245 6355598 YP_001942161.1 CDS Clim_0076 NC_010803.1 81816 82409 R Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.; indolepyruvate oxidoreductase subunit beta complement(81816..82409) Chlorobium limicola DSM 245 6355599 YP_001942162.1 CDS Clim_0077 NC_010803.1 82415 84025 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cte:CT0114 ferredoxin oxidoreductase, alpha subunit; thiamine pyrophosphate domain-containing TPP-binding protein complement(82415..84025) Chlorobium limicola DSM 245 6355600 YP_001942163.1 CDS Clim_0078 NC_010803.1 84212 85402 R KEGG: cte:CT0116 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA complement(84212..85402) Chlorobium limicola DSM 245 6355601 YP_001942164.1 CDS Clim_0079 NC_010803.1 85597 86442 D KEGG: cph:Cpha266_0761 hypothetical protein; hypothetical protein 85597..86442 Chlorobium limicola DSM 245 6355602 YP_001942165.1 CDS Clim_0080 NC_010803.1 86483 87373 D KEGG: amr:AM1_H0103 hypothetical protein; hypothetical protein 86483..87373 Chlorobium limicola DSM 245 6355603 YP_001942166.1 CDS Clim_0081 NC_010803.1 87426 87971 R PFAM: nitroreductase; KEGG: cph:Cpha266_2684 nitroreductase; nitroreductase complement(87426..87971) Chlorobium limicola DSM 245 6355604 YP_001942167.1 CDS Clim_0082 NC_010803.1 87955 88566 R KEGG: plt:Plut_0074 hypothetical protein; hypothetical protein complement(87955..88566) Chlorobium limicola DSM 245 6355605 YP_001942168.1 CDS prfA NC_010803.1 88727 89800 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(88727..89800) Chlorobium limicola DSM 245 6355606 YP_001942169.1 CDS Clim_0084 NC_010803.1 89837 91198 R TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: cph:Cpha266_2681 RseP peptidase. Metallo peptidase. MEROPS family M50B; membrane-associated zinc metalloprotease complement(89837..91198) Chlorobium limicola DSM 245 6355607 YP_001942170.1 CDS Clim_0085 NC_010803.1 91293 92441 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(91293..92441) Chlorobium limicola DSM 245 6355608 YP_001942171.1 CDS Clim_0086 NC_010803.1 92753 93028 R catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(92753..93028) Chlorobium limicola DSM 245 6355610 YP_001942172.1 CDS Clim_0087 NC_010803.1 93045 95129 R KEGG: cph:Cpha266_2678 FtsH-2 peptidase. Metallo peptidase. MEROPS family M41; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(93045..95129) Chlorobium limicola DSM 245 6355611 YP_001942173.1 CDS Clim_0088 NC_010803.1 95392 96231 D TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: plt:Plut_0079 orotidine 5'-phosphate decarboxylase subfamily 2; orotidine 5'-phosphate decarboxylase 95392..96231 Chlorobium limicola DSM 245 6355612 YP_001942174.1 CDS Clim_0089 NC_010803.1 96341 98185 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 96341..98185 Chlorobium limicola DSM 245 6355613 YP_001942175.1 CDS Clim_0090 NC_010803.1 98212 98571 D KEGG: cph:Cpha266_1070 hypothetical protein; hypothetical protein 98212..98571 Chlorobium limicola DSM 245 6355614 YP_001942176.1 CDS Clim_0091 NC_010803.1 98703 99644 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; domain of unknown function DUF1731; KEGG: cph:Cpha266_2675 domain of unknown function DUF1731; hypothetical protein 98703..99644 Chlorobium limicola DSM 245 6355615 YP_001942177.1 CDS Clim_0092 NC_010803.1 99749 100243 D PFAM: Ferritin Dps family protein; KEGG: cph:Cpha266_2674 ferritin, Dps family protein; ferritin Dps family protein 99749..100243 Chlorobium limicola DSM 245 6355616 YP_001942178.1 CDS Clim_0093 NC_010803.1 100322 100594 R PFAM: RNP-1 like RNA-binding protein; KEGG: cph:Cpha266_2673 RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein complement(100322..100594) Chlorobium limicola DSM 245 6355617 YP_001942179.1 CDS Clim_0094 NC_010803.1 101052 102383 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cph:Cpha266_2672 ammonium transporter; ammonium transporter 101052..102383 Chlorobium limicola DSM 245 6355618 YP_001942180.1 CDS Clim_0095 NC_010803.1 102393 102734 D PFAM: nitrogen regulatory protein P-II; KEGG: cch:Cag_1998 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 102393..102734 Chlorobium limicola DSM 245 6355619 YP_001942181.1 CDS Clim_0096 NC_010803.1 102824 103399 R PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_2669 hypothetical protein; hypothetical protein complement(102824..103399) Chlorobium limicola DSM 245 6355620 YP_001942182.1 CDS Clim_0097 NC_010803.1 103717 104442 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: plt:Plut_0093 segregation and condensation protein A; chromosome segregation and condensation protein ScpA 103717..104442 Chlorobium limicola DSM 245 6355621 YP_001942183.1 CDS Clim_0098 NC_010803.1 104442 104921 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: wsu:WS0422 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 104442..104921 Chlorobium limicola DSM 245 6355622 YP_001942184.1 CDS Clim_0099 NC_010803.1 105082 106356 D PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_2667 uncharacterised conserved protein UCP033563; hypothetical protein 105082..106356 Chlorobium limicola DSM 245 6355623 YP_001942185.1 CDS Clim_0100 NC_010803.1 106358 106813 D PFAM: protein of unknown function UPF0079; KEGG: cph:Cpha266_2666 protein of unknown function UPF0079; hypothetical protein 106358..106813 Chlorobium limicola DSM 245 6355624 YP_001942186.1 CDS Clim_0101 NC_010803.1 106810 107490 D PFAM: peptidase M22 glycoprotease; KEGG: cph:Cpha266_2665 peptidase M22, glycoprotease; peptidase M22 glycoprotease 106810..107490 Chlorobium limicola DSM 245 6355625 YP_001942187.1 CDS Clim_0102 NC_010803.1 107538 107933 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: cph:Cpha266_2664 iojap-like protein; iojap family protein 107538..107933 Chlorobium limicola DSM 245 6355626 YP_001942188.1 CDS Clim_0103 NC_010803.1 108050 110536 D KEGG: cph:Cpha266_2663 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 108050..110536 Chlorobium limicola DSM 245 6355627 YP_001942189.1 CDS Clim_0104 NC_010803.1 110588 110812 D SMART: zinc finger CDGSH-type domain protein; KEGG: cph:Cpha266_2662 zinc finger, CDGSH-type domain protein; zinc finger CDGSH-type domain-containing protein 110588..110812 Chlorobium limicola DSM 245 6355628 YP_001942190.1 CDS pyrG NC_010803.1 110890 112599 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 110890..112599 Chlorobium limicola DSM 245 6355817 YP_001942191.1 CDS Clim_0106 NC_010803.1 118357 119022 R PFAM: RES domain protein; KEGG: gur:Gura_0589 hypothetical protein; RES domain-containing protein complement(118357..119022) Chlorobium limicola DSM 245 6356071 YP_001942192.1 CDS Clim_0107 NC_010803.1 119054 119434 R KEGG: pvi:Cvib_0659 hypothetical protein; hypothetical protein complement(119054..119434) Chlorobium limicola DSM 245 6356072 YP_001942193.1 CDS Clim_0109 NC_010803.1 119993 121300 R PFAM: HipA domain protein; KEGG: cph:Cpha266_2264 HipA domain protein; HipA domain-containing protein complement(119993..121300) Chlorobium limicola DSM 245 6356074 YP_001942194.1 CDS Clim_0110 NC_010803.1 121297 121644 R SMART: helix-turn-helix domain protein; KEGG: cph:Cpha266_2265 helix-turn-helix domain protein; XRE family transcriptional regulator complement(121297..121644) Chlorobium limicola DSM 245 6356075 YP_001942195.1 CDS Clim_0112 NC_010803.1 121989 122258 D KEGG: cph:Cpha266_1216 hypothetical protein; hypothetical protein 121989..122258 Chlorobium limicola DSM 245 6356077 YP_001942196.1 CDS Clim_0113 NC_010803.1 122258 122536 D PFAM: plasmid stabilization system; KEGG: cph:Cpha266_1217 plasmid stabilization system; plasmid stabilization system 122258..122536 Chlorobium limicola DSM 245 6356078 YP_001942197.1 CDS Clim_0116 NC_010803.1 123483 124580 R PFAM: Domain of unknown function DUF1814; KEGG: cph:Cpha266_0782 hypothetical protein; hypothetical protein complement(123483..124580) Chlorobium limicola DSM 245 6356081 YP_001942198.1 CDS Clim_0117 NC_010803.1 124577 125359 R KEGG: cph:Cpha266_0781 hypothetical protein; hypothetical protein complement(124577..125359) Chlorobium limicola DSM 245 6356082 YP_001942199.1 CDS Clim_0118 NC_010803.1 125664 125873 D hypothetical protein 125664..125873 Chlorobium limicola DSM 245 6356083 YP_001942200.1 CDS Clim_0119 NC_010803.1 126030 126842 R PFAM: IstB domain protein ATP-binding protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cph:Cpha266_2659 IstB domain protein ATP-binding protein; IstB domain-containing protein ATP-binding protein complement(126030..126842) Chlorobium limicola DSM 245 6356084 YP_001942201.1 CDS Clim_0122 NC_010803.1 128838 129065 R KEGG: ava:Ava_1156 type I site-specific deoxyribonuclease HsdR; type I site-specific deoxyribonuclease HsdR complement(128838..129065) Chlorobium limicola DSM 245 6356087 YP_001942202.1 CDS Clim_0123 NC_010803.1 129148 134529 R KEGG: noc:Noc_0639 hypothetical protein; hypothetical protein complement(129148..134529) Chlorobium limicola DSM 245 6356088 YP_001942203.1 CDS Clim_0124 NC_010803.1 134646 134984 R hypothetical protein complement(134646..134984) Chlorobium limicola DSM 245 6356089 YP_001942204.1 CDS Clim_0125 NC_010803.1 135020 135637 R KEGG: wsu:WS1135 hypothetical protein; hypothetical protein complement(135020..135637) Chlorobium limicola DSM 245 6356090 YP_001942205.1 CDS Clim_0126 NC_010803.1 135612 136343 R hypothetical protein complement(135612..136343) Chlorobium limicola DSM 245 6356091 YP_001942206.1 CDS Clim_0127 NC_010803.1 136347 138956 R KEGG: pau:PA14_15610 hypothetical protein; hypothetical protein complement(136347..138956) Chlorobium limicola DSM 245 6356092 YP_001942207.1 CDS Clim_0128 NC_010803.1 138953 141493 R PFAM: restriction modification system DNA specificity domain; N-6 DNA methylase; KEGG: cph:Cpha266_0895 N-6 DNA methylase; N-6 DNA methylase complement(138953..141493) Chlorobium limicola DSM 245 6356093 YP_001942208.1 CDS Clim_0129 NC_010803.1 141506 144046 R PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_0896 type III restriction enzyme, res subunit; type III restriction protein res subunit complement(141506..144046) Chlorobium limicola DSM 245 6356094 YP_001942209.1 CDS Clim_0130 NC_010803.1 144336 144782 D KEGG: cph:Cpha266_0759 hypothetical protein; hypothetical protein 144336..144782 Chlorobium limicola DSM 245 6356095 YP_001942210.1 CDS Clim_0131 NC_010803.1 144990 145358 D PFAM: regulatory protein ArsR; KEGG: cph:Cpha266_0758 ArsR family transcriptional regulator; ArsR family transcriptional regulator 144990..145358 Chlorobium limicola DSM 245 6356096 YP_001942211.1 CDS Clim_0132 NC_010803.1 145571 146662 D PFAM: permease; KEGG: cph:Cpha266_0757 permease; permease 145571..146662 Chlorobium limicola DSM 245 6356097 YP_001942212.1 CDS Clim_0133 NC_010803.1 146807 147508 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cph:Cpha266_0756 PHP C-terminal domain protein; PHP domain-containing protein 146807..147508 Chlorobium limicola DSM 245 6356098 YP_001942213.1 CDS Clim_0134 NC_010803.1 147556 149754 R TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: cph:Cpha266_0755 catalase/peroxidase HPI; catalase/peroxidase HPI complement(147556..149754) Chlorobium limicola DSM 245 6356099 YP_001942214.1 CDS Clim_0135 NC_010803.1 149922 150341 R PFAM: ferric-uptake regulator; KEGG: cph:Cpha266_0754 ferric uptake regulator, Fur family; Fur family ferric uptake regulator complement(149922..150341) Chlorobium limicola DSM 245 6356100 YP_001942215.1 CDS Clim_0136 NC_010803.1 150641 150868 D KEGG: cph:Cpha266_0752 hypothetical protein; hypothetical protein 150641..150868 Chlorobium limicola DSM 245 6356101 YP_001942216.1 CDS Clim_0137 NC_010803.1 150872 152245 D KEGG: cph:Cpha266_0752 hypothetical protein; hypothetical protein 150872..152245 Chlorobium limicola DSM 245 6356102 YP_001942217.1 CDS Clim_0138 NC_010803.1 152436 154262 D PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_2592 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase; radical SAM protein 152436..154262 Chlorobium limicola DSM 245 6356103 YP_001942218.1 CDS Clim_0139 NC_010803.1 154314 154976 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_2591 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase 154314..154976 Chlorobium limicola DSM 245 6356104 YP_001942219.1 CDS Clim_0140 NC_010803.1 154991 156472 D TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: cph:Cpha266_2590 glycerol kinase; glycerol kinase 154991..156472 Chlorobium limicola DSM 245 6356105 YP_001942220.1 CDS Clim_0142 NC_010803.1 156701 157966 R KEGG: plt:Plut_0585 hypothetical protein; hypothetical protein complement(156701..157966) Chlorobium limicola DSM 245 6356107 YP_001942221.1 CDS Clim_0143 NC_010803.1 163926 164342 D PFAM: thioesterase superfamily protein; KEGG: cph:Cpha266_2516 thioesterase superfamily protein; thioesterase superfamily protein 163926..164342 Chlorobium limicola DSM 245 6356113 YP_001942222.1 CDS Clim_0144 NC_010803.1 164617 165144 D KEGG: cph:Cpha266_2515 hypothetical protein; hypothetical protein 164617..165144 Chlorobium limicola DSM 245 6356114 YP_001942223.1 CDS Clim_0145 NC_010803.1 165154 166158 D PFAM: glycosyl transferase family 9; KEGG: cph:Cpha266_2514 glycosyl transferase, family 9; glycosyl transferase family protein 165154..166158 Chlorobium limicola DSM 245 6356115 YP_001942224.1 CDS Clim_0146 NC_010803.1 166155 166931 D KEGG: cph:Cpha266_2513 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 166155..166931 Chlorobium limicola DSM 245 6356116 YP_001942225.1 CDS rpsF NC_010803.1 167199 167600 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 167199..167600 Chlorobium limicola DSM 245 6356117 YP_001942226.1 CDS Clim_0148 NC_010803.1 167667 168140 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cph:Cpha266_2511 single-strand binding protein; single-strand binding protein 167667..168140 Chlorobium limicola DSM 245 6356118 YP_001942227.1 CDS rpsR NC_010803.1 168178 168441 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 168178..168441 Chlorobium limicola DSM 245 6356119 YP_001942228.1 CDS rplI NC_010803.1 168479 168934 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 168479..168934 Chlorobium limicola DSM 245 6356120 YP_001942229.1 CDS Clim_0151 NC_010803.1 169120 169521 D KEGG: cph:Cpha266_2508 hypothetical protein; hypothetical protein 169120..169521 Chlorobium limicola DSM 245 6356121 YP_001942230.1 CDS pheS NC_010803.1 169656 170681 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(169656..170681) Chlorobium limicola DSM 245 6356122 YP_001942231.1 CDS rplT NC_010803.1 170699 171046 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(170699..171046) Chlorobium limicola DSM 245 6356123 YP_001942232.1 CDS rpmI NC_010803.1 171073 171267 R PFAM: ribosomal protein L35; KEGG: cte:CT2128 50S ribosomal protein L35; 50S ribosomal protein L35 complement(171073..171267) Chlorobium limicola DSM 245 6356124 YP_001942233.1 CDS infC NC_010803.1 171300 171941 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(171300..171941) Chlorobium limicola DSM 245 6356125 YP_001942234.1 CDS thrS NC_010803.1 171965 173938 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(171965..173938) Chlorobium limicola DSM 245 6356126 YP_001942235.1 CDS Clim_0157 NC_010803.1 174146 175555 R TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197; KEGG: cph:Cpha266_2500 chlorophyllide reductase subunit Z; chlorophyllide reductase subunit Z complement(174146..175555) Chlorobium limicola DSM 245 6356127 YP_001942236.1 CDS Clim_0158 NC_010803.1 175599 177347 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: cph:Cpha266_2499 glycoside hydrolase, family 3 domain protein; glycoside hydrolase family protein complement(175599..177347) Chlorobium limicola DSM 245 6356128 YP_001942237.1 CDS Clim_0159 NC_010803.1 177706 178806 D PFAM: Asparaginase/glutaminase; KEGG: pgi:PG2121 L-asparaginase; 1-alkyl-2-acetylglycerophosphocholine esterase 177706..178806 Chlorobium limicola DSM 245 6356129 YP_001942238.1 CDS Clim_0160 NC_010803.1 178825 179163 R KEGG: cph:Cpha266_2498 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase complement(178825..179163) Chlorobium limicola DSM 245 6356130 YP_001942239.1 CDS Clim_0161 NC_010803.1 179330 180892 R PFAM: transposase IS4 family protein; KEGG: amt:Amet_3130 transposase, IS4 family protein; transposase IS4 family protein complement(179330..180892) Chlorobium limicola DSM 245 6356131 YP_001942240.1 CDS Clim_0162 NC_010803.1 181160 181672 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pvi:Cvib_0193 HNH endonuclease; HNH endonuclease complement(181160..181672) Chlorobium limicola DSM 245 6356132 YP_001942241.1 CDS Clim_0163 NC_010803.1 181826 183286 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 complement(181826..183286) Chlorobium limicola DSM 245 6356133 YP_001942242.1 CDS Clim_0164 NC_010803.1 183404 184225 R PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: cph:Cpha266_2495 ribonuclease III; Ribonuclease III complement(183404..184225) Chlorobium limicola DSM 245 6356134 YP_001942243.1 CDS Clim_0165 NC_010803.1 184239 185495 R TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: cph:Cpha266_2494 3-oxoacyl-[acyl-carrier-protein] synthase II; 3-oxoacyl-(acyl-carrier-protein) synthase 2 complement(184239..185495) Chlorobium limicola DSM 245 6355818 YP_001942244.1 CDS acpP NC_010803.1 185544 185780 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(185544..185780) Chlorobium limicola DSM 245 6355819 YP_001942245.1 CDS Clim_0167 NC_010803.1 185866 186603 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: plt:Plut_0131 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase complement(185866..186603) Chlorobium limicola DSM 245 6355820 YP_001942246.1 CDS Clim_0168 NC_010803.1 186658 187566 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cph:Cpha266_2491 [acyl-carrier-protein] S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase complement(186658..187566) Chlorobium limicola DSM 245 6355821 YP_001942247.1 CDS Clim_0169 NC_010803.1 187597 188583 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(187597..188583) Chlorobium limicola DSM 245 6355822 YP_001942248.1 CDS Clim_0170 NC_010803.1 188681 189706 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(188681..189706) Chlorobium limicola DSM 245 6355823 YP_001942249.1 CDS rpmF NC_010803.1 189735 189926 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(189735..189926) Chlorobium limicola DSM 245 6355824 YP_001942250.1 CDS Clim_0172 NC_010803.1 189952 190479 R PFAM: protein of unknown function DUF177; KEGG: cte:CT2111 hypothetical protein; hypothetical protein complement(189952..190479) Chlorobium limicola DSM 245 6355825 YP_001942251.1 CDS Clim_0173 NC_010803.1 191009 191668 D KEGG: plt:Plut_0330 uridine kinase-like; uridine kinase-like protein 191009..191668 Chlorobium limicola DSM 245 6355827 YP_001942252.1 CDS Clim_0174 NC_010803.1 191750 193246 D KEGG: cph:Cpha266_1834 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor protein 191750..193246 Chlorobium limicola DSM 245 6355828 YP_001942253.1 CDS Clim_0175 NC_010803.1 193271 193966 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: plt:Plut_1358 PAS/PAC sensor signal transduction histidine kinase; histidine kinase 193271..193966 Chlorobium limicola DSM 245 6355829 YP_001942254.1 CDS Clim_0176 NC_010803.1 193979 194353 D PFAM: response regulator receiver; KEGG: tle:Tlet_0986 two component transcriptional regulator, winged helix family; response regulator receiver protein 193979..194353 Chlorobium limicola DSM 245 6355830 YP_001942255.1 CDS Clim_0177 NC_010803.1 194424 194600 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: plt:Plut_1978 rubredoxin-like; rubredoxin-type Fe(Cys)4 protein complement(194424..194600) Chlorobium limicola DSM 245 6355831 YP_001942256.1 CDS Clim_0178 NC_010803.1 195058 195726 D TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: drm:Dred_0778 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 195058..195726 Chlorobium limicola DSM 245 6355832 YP_001942257.1 CDS Clim_0179 NC_010803.1 195755 197065 R PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: cph:Cpha266_0167 glutamate dehydrogenase (NAD/NADP); Glu/Leu/Phe/Val dehydrogenase complement(195755..197065) Chlorobium limicola DSM 245 6355833 YP_001942258.1 CDS Clim_0180 NC_010803.1 197234 198091 R PFAM: protein of unknown function DUF52; KEGG: mgm:Mmc1_2152 protein of unknown function DUF52; hypothetical protein complement(197234..198091) Chlorobium limicola DSM 245 6355834 YP_001942259.1 CDS dapF NC_010803.1 198250 199068 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(198250..199068) Chlorobium limicola DSM 245 6355835 YP_001942260.1 CDS Clim_0182 NC_010803.1 199470 201665 D KEGG: cph:Cpha266_0219 photosystem P840 reaction center, large subunit; photosystem P840 reaction center, large subunit 199470..201665 Chlorobium limicola DSM 245 6355837 YP_001942261.1 CDS Clim_0183 NC_010803.1 201754 202431 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0220 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 201754..202431 Chlorobium limicola DSM 245 6354635 YP_001942262.1 CDS Clim_0184 NC_010803.1 202549 203298 D PFAM: glycosyl transferase family 2; KEGG: plt:Plut_1974 dolichyl-phosphate beta-D-mannosyltransferase; dolichyl-phosphate beta-D-mannosyltransferase 202549..203298 Chlorobium limicola DSM 245 6354636 YP_001942263.1 CDS Clim_0185 NC_010803.1 203359 205434 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(203359..205434) Chlorobium limicola DSM 245 6354637 YP_001942264.1 CDS eno NC_010803.1 205821 207134 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 205821..207134 Chlorobium limicola DSM 245 6354638 YP_001942265.1 CDS Clim_0187 NC_010803.1 207248 207556 D PFAM: Septum formation initiator; KEGG: cph:Cpha266_0224 septum formation initiator; septum formation initiator 207248..207556 Chlorobium limicola DSM 245 6354639 YP_001942266.1 CDS Clim_0188 NC_010803.1 207593 209632 D KEGG: cph:Cpha266_0225 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 207593..209632 Chlorobium limicola DSM 245 6354640 YP_001942267.1 CDS Clim_0189 NC_010803.1 209646 210449 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_0226 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 209646..210449 Chlorobium limicola DSM 245 6354641 YP_001942268.1 CDS secE NC_010803.1 210932 211123 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 210932..211123 Chlorobium limicola DSM 245 6354646 YP_001942269.1 CDS Clim_0191 NC_010803.1 211146 211721 D TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KEGG: cph:Cpha266_0228 transcription antitermination protein NusG; NusG antitermination factor 211146..211721 Chlorobium limicola DSM 245 6354647 YP_001942270.1 CDS rplK NC_010803.1 211767 212192 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 211767..212192 Chlorobium limicola DSM 245 6354648 YP_001942271.1 CDS rplA NC_010803.1 212263 212952 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 212263..212952 Chlorobium limicola DSM 245 6354649 YP_001942272.1 CDS rplJ NC_010803.1 212970 213488 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 212970..213488 Chlorobium limicola DSM 245 6354650 YP_001942273.1 CDS rplL NC_010803.1 213557 213934 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 213557..213934 Chlorobium limicola DSM 245 6354651 YP_001942274.1 CDS rpoB NC_010803.1 214117 218055 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 214117..218055 Chlorobium limicola DSM 245 6354652 YP_001942275.1 CDS Clim_0197 NC_010803.1 218126 222616 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 218126..222616 Chlorobium limicola DSM 245 6354653 YP_001942276.1 CDS Clim_0198 NC_010803.1 222808 224151 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: plt:Plut_1960 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase complement(222808..224151) Chlorobium limicola DSM 245 6354654 YP_001942277.1 CDS Clim_0199 NC_010803.1 224173 224658 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cph:Cpha266_0236 biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(224173..224658) Chlorobium limicola DSM 245 6354655 YP_001942278.1 CDS Clim_0200 NC_010803.1 224695 225261 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(224695..225261) Chlorobium limicola DSM 245 6354656 YP_001942279.1 CDS Clim_0201 NC_010803.1 225460 225735 D PFAM: histone family protein DNA-binding protein; KEGG: cte:CT0160 DNA-binding protein HU-beta; histone family protein DNA-binding protein 225460..225735 Chlorobium limicola DSM 245 6354657 YP_001942280.1 CDS Clim_0202 NC_010803.1 225826 226827 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 225826..226827 Chlorobium limicola DSM 245 6354658 YP_001942281.1 CDS Clim_0203 NC_010803.1 226940 227968 R catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta complement(226940..227968) Chlorobium limicola DSM 245 6354659 YP_001942282.1 CDS Clim_0204 NC_010803.1 227972 229855 R PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cph:Cpha266_0241 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein complement(227972..229855) Chlorobium limicola DSM 245 6354660 YP_001942283.1 CDS Clim_0205 NC_010803.1 230056 230325 R KEGG: cph:Cpha266_0242 hypothetical protein; hypothetical protein complement(230056..230325) Chlorobium limicola DSM 245 6354661 YP_001942284.1 CDS alaS NC_010803.1 230580 233246 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 230580..233246 Chlorobium limicola DSM 245 6354662 YP_001942285.1 CDS Clim_0207 NC_010803.1 233261 234616 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cph:Cpha266_0244 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 233261..234616 Chlorobium limicola DSM 245 6354663 YP_001942286.1 CDS Clim_0208 NC_010803.1 234666 235160 D KEGG: cph:Cpha266_0245 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 234666..235160 Chlorobium limicola DSM 245 6354664 YP_001942287.1 CDS Clim_0209 NC_010803.1 235188 235496 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0246 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 235188..235496 Chlorobium limicola DSM 245 6354665 YP_001942288.1 CDS Clim_0210 NC_010803.1 235552 236508 R PFAM: HipA domain protein; KEGG: cph:Cpha266_0247 HipA domain protein; HipA domain-containing protein complement(235552..236508) Chlorobium limicola DSM 245 6354666 YP_001942289.1 CDS Clim_0211 NC_010803.1 236513 236836 R TIGRFAM: HipA N-terminal domain protein; KEGG: cph:Cpha266_0248 hypothetical protein; HipA N-terminal domain-containing protein complement(236513..236836) Chlorobium limicola DSM 245 6354667 YP_001942290.1 CDS Clim_0212 NC_010803.1 236840 237046 R TIGRFAM: transcriptional regulator, y4mF family; PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_0249 XRE family transcriptional regulator; XRE family transcriptional regulator complement(236840..237046) Chlorobium limicola DSM 245 6354668 YP_001942291.1 CDS Clim_0213 NC_010803.1 237369 238316 R PFAM: Domain of unknown function DUF1814; KEGG: ajs:Ajs_1569 hypothetical protein; hypothetical protein complement(237369..238316) Chlorobium limicola DSM 245 6354669 YP_001942292.1 CDS Clim_0214 NC_010803.1 238294 238716 R KEGG: cph:Cpha266_0646 hypothetical protein; hypothetical protein complement(238294..238716) Chlorobium limicola DSM 245 6354670 YP_001942293.1 CDS Clim_0215 NC_010803.1 238735 238905 R hypothetical protein complement(238735..238905) Chlorobium limicola DSM 245 6354671 YP_001942294.1 CDS Clim_0216 NC_010803.1 239055 240272 R KEGG: cph:Cpha266_0250 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB complement(239055..240272) Chlorobium limicola DSM 245 6354672 YP_001942295.1 CDS Clim_0217 NC_010803.1 240339 240596 D KEGG: cph:Cpha266_0270 hypothetical protein; hypothetical protein 240339..240596 Chlorobium limicola DSM 245 6354673 YP_001942296.1 CDS Clim_0218 NC_010803.1 240751 241971 D KEGG: pvi:Cvib_1663 hypothetical protein; hypothetical protein 240751..241971 Chlorobium limicola DSM 245 6354674 YP_001942297.1 CDS Clim_0220 NC_010803.1 242705 244129 D KEGG: pvi:Cvib_1663 hypothetical protein; hypothetical protein 242705..244129 Chlorobium limicola DSM 245 6354676 YP_001942298.1 CDS Clim_0221 NC_010803.1 244392 245063 R PFAM: integrase; KEGG: pna:Pnap_4798 phage integrase family protein; integrase complement(244392..245063) Chlorobium limicola DSM 245 6354677 YP_001942299.1 CDS Clim_0222 NC_010803.1 245244 246290 D PFAM: transposase IS4 family protein; KEGG: dol:Dole_3091 transposase IS4 family protein; transposase IS4 family protein 245244..246290 Chlorobium limicola DSM 245 6354678 YP_001942300.1 CDS Clim_0223 NC_010803.1 246622 252915 D KEGG: fjo:Fjoh_3535 hypothetical protein; hypothetical protein 246622..252915 Chlorobium limicola DSM 245 6354679 YP_001942301.1 CDS Clim_0224 NC_010803.1 252893 253594 D KEGG: fjo:Fjoh_3534 hypothetical protein; hypothetical protein 252893..253594 Chlorobium limicola DSM 245 6354680 YP_001942302.1 CDS Clim_0226 NC_010803.1 254450 255070 D hypothetical protein 254450..255070 Chlorobium limicola DSM 245 6354682 YP_001942303.1 CDS Clim_0227 NC_010803.1 255185 256552 R PFAM: transposase IS4 family protein; KEGG: cph:Cpha266_2634 transposase, IS4 family protein; transposase IS4 family protein complement(255185..256552) Chlorobium limicola DSM 245 6354683 YP_001942304.1 CDS Clim_0228 NC_010803.1 256778 258223 D KEGG: smr:Smar_0369 hypothetical protein; hypothetical protein 256778..258223 Chlorobium limicola DSM 245 6354684 YP_001942305.1 CDS Clim_0230 NC_010803.1 259062 259835 R PFAM: IstB domain protein ATP-binding protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cph:Cpha266_2659 IstB domain protein ATP-binding protein; IstB domain-containing protein ATP-binding protein complement(259062..259835) Chlorobium limicola DSM 245 6354686 YP_001942306.1 CDS Clim_0232 NC_010803.1 260724 261149 D TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: cph:Cpha266_0291 nucleotidyltransferase substrate binding protein, HI0074 family; nucleotidyltransferase substrate binding protein 260724..261149 Chlorobium limicola DSM 245 6354688 YP_001942307.1 CDS Clim_0233 NC_010803.1 261146 261472 D PFAM: DNA polymerase beta domain protein region; KEGG: cph:Cpha266_0292 DNA polymerase, beta domain protein region; DNA polymerase beta domain-containing protein 261146..261472 Chlorobium limicola DSM 245 6354689 YP_001942308.1 CDS Clim_0234 NC_010803.1 261766 262137 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: gme:Gmet_0160 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 261766..262137 Chlorobium limicola DSM 245 6354690 YP_001942309.1 CDS Clim_0235 NC_010803.1 262395 262820 D KEGG: pna:Pnap_4866 hypothetical protein; hypothetical protein 262395..262820 Chlorobium limicola DSM 245 6354691 YP_001942310.1 CDS Clim_0236 NC_010803.1 262989 263324 D SMART: helix-turn-helix domain protein; KEGG: pvi:Cvib_0653 XRE family transcriptional regulator; helix-turn-helix domain-containing protein 262989..263324 Chlorobium limicola DSM 245 6354692 YP_001942311.1 CDS Clim_0237 NC_010803.1 263317 264564 D PFAM: HipA domain protein; KEGG: cak:Caul_5344 HipA domain protein; HipA domain-containing protein 263317..264564 Chlorobium limicola DSM 245 6354693 YP_001942312.1 CDS Clim_0238 NC_010803.1 264812 267580 D KEGG: cph:Cpha266_0299 DNA helicase; DNA helicase 264812..267580 Chlorobium limicola DSM 245 6354694 YP_001942313.1 CDS Clim_0239 NC_010803.1 267676 267891 D KEGG: cch:Cag_1322 hypothetical protein; hypothetical protein 267676..267891 Chlorobium limicola DSM 245 6354695 YP_001942314.1 CDS Clim_0240 NC_010803.1 267975 269543 D PFAM: transposase IS4 family protein; KEGG: amt:Amet_3130 transposase, IS4 family protein; transposase IS4 family protein 267975..269543 Chlorobium limicola DSM 245 6354696 YP_001942315.1 CDS guaA NC_010803.1 269707 271248 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(269707..271248) Chlorobium limicola DSM 245 6354697 YP_001942316.1 CDS Clim_0242 NC_010803.1 271283 273475 R TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cph:Cpha266_0301 penicillin-binding protein, 1A family; penicillin-binding protein complement(271283..273475) Chlorobium limicola DSM 245 6354698 YP_001942317.1 CDS Clim_0243 NC_010803.1 273603 274526 R PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_0302 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(273603..274526) Chlorobium limicola DSM 245 6354699 YP_001942318.1 CDS Clim_0244 NC_010803.1 274644 275357 D PFAM: SNARE associated Golgi protein; KEGG: cph:Cpha266_0303 DedA protein; hypothetical protein 274644..275357 Chlorobium limicola DSM 245 6354700 YP_001942319.1 CDS Clim_0245 NC_010803.1 276001 277476 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_0305 amine oxidase; amine oxidase 276001..277476 Chlorobium limicola DSM 245 6354702 YP_001942320.1 CDS Clim_0246 NC_010803.1 277730 278992 D KEGG: cph:Cpha266_0306 hypothetical protein; hypothetical protein 277730..278992 Chlorobium limicola DSM 245 6354703 YP_001942321.1 CDS Clim_0247 NC_010803.1 278997 279734 D KEGG: cph:Cpha266_0307 hypothetical protein; hypothetical protein 278997..279734 Chlorobium limicola DSM 245 6354704 YP_001942322.1 CDS Clim_0248 NC_010803.1 279789 280511 D KEGG: mmi:MMAR_2580 hypothetical protein; hypothetical protein 279789..280511 Chlorobium limicola DSM 245 6354705 YP_001942323.1 CDS Clim_0249 NC_010803.1 280605 281447 R PFAM: beta-lactamase domain protein; KEGG: cph:Cpha266_0308 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(280605..281447) Chlorobium limicola DSM 245 6354706 YP_001942324.1 CDS Clim_0250 NC_010803.1 281526 282173 R PFAM: surface antigen msp4 family protein; KEGG: cph:Cpha266_0309 outer surface protein; surface antigen msp4 family protein complement(281526..282173) Chlorobium limicola DSM 245 6354707 YP_001942325.1 CDS Clim_0251 NC_010803.1 282463 283272 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: cph:Cpha266_0311 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 282463..283272 Chlorobium limicola DSM 245 6354708 YP_001942326.1 CDS Clim_0252 NC_010803.1 283303 284655 D TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: cph:Cpha266_0312 cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing); cobyrinic acid a,c-diamide synthase 283303..284655 Chlorobium limicola DSM 245 6354709 YP_001942327.1 CDS Clim_0253 NC_010803.1 284662 285195 D KEGG: cph:Cpha266_0313 hypothetical protein; hypothetical protein 284662..285195 Chlorobium limicola DSM 245 6354710 YP_001942328.1 CDS Clim_0254 NC_010803.1 285185 285667 R KEGG: cph:Cpha266_0333 hypothetical protein; hypothetical protein complement(285185..285667) Chlorobium limicola DSM 245 6354711 YP_001942329.1 CDS Clim_0255 NC_010803.1 285833 288382 D PFAM: UvrB/UvrC protein; ATPase AAA; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_0334 ATPase AAA-2 domain protein; ATPase AAA 285833..288382 Chlorobium limicola DSM 245 6354712 YP_001942330.1 CDS Clim_0256 NC_010803.1 288452 289825 R catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta complement(288452..289825) Chlorobium limicola DSM 245 6354713 YP_001942331.1 CDS Clim_0257 NC_010803.1 289822 290268 R hypothetical protein complement(289822..290268) Chlorobium limicola DSM 245 6354714 YP_001942332.1 CDS Clim_0258 NC_010803.1 290618 291685 R KEGG: cph:Cpha266_0336 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase complement(290618..291685) Chlorobium limicola DSM 245 6353775 YP_001942333.1 CDS Clim_0259 NC_010803.1 291979 292932 D KEGG: cph:Cpha266_0337 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 291979..292932 Chlorobium limicola DSM 245 6353776 YP_001942334.1 CDS Clim_0260 NC_010803.1 292920 293513 R KEGG: cph:Cpha266_0338 hypothetical protein; hypothetical protein complement(292920..293513) Chlorobium limicola DSM 245 6353777 YP_001942335.1 CDS Clim_0261 NC_010803.1 293640 294293 D KEGG: cph:Cpha266_0339 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 293640..294293 Chlorobium limicola DSM 245 6353778 YP_001942336.1 CDS Clim_0262 NC_010803.1 294333 296438 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cph:Cpha266_0340 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 294333..296438 Chlorobium limicola DSM 245 6353779 YP_001942337.1 CDS Clim_0263 NC_010803.1 296463 298265 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: cph:Cpha266_0341 phosphoenolpyruvate--protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase complement(296463..298265) Chlorobium limicola DSM 245 6353780 YP_001942338.1 CDS Clim_0264 NC_010803.1 298275 299798 R TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: cch:Cag_1608 DnaB helicase; replicative DNA helicase complement(298275..299798) Chlorobium limicola DSM 245 6353781 YP_001942339.1 CDS Clim_0265 NC_010803.1 299813 300448 R TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: cph:Cpha266_0343 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein complement(299813..300448) Chlorobium limicola DSM 245 6353782 YP_001942340.1 CDS Clim_0266 NC_010803.1 300470 301696 R KEGG: pvi:Cvib_1568 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase complement(300470..301696) Chlorobium limicola DSM 245 6353783 YP_001942341.1 CDS Clim_0267 NC_010803.1 301753 306318 R KEGG: cph:Cpha266_0345 hypothetical protein; hypothetical protein complement(301753..306318) Chlorobium limicola DSM 245 6353784 YP_001942342.1 CDS Clim_0268 NC_010803.1 306305 306808 R TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: cph:Cpha266_0346 RfaE bifunctional protein; rfaE bifunctional protein complement(306305..306808) Chlorobium limicola DSM 245 6353785 YP_001942343.1 CDS Clim_0269 NC_010803.1 307004 307276 D KEGG: mmw:Mmwyl1_0817 DNA polymerase, beta domain protein region; DNA polymerase, beta domain-containing protein region 307004..307276 Chlorobium limicola DSM 245 6353786 YP_001942344.1 CDS Clim_0270 NC_010803.1 307273 307422 D hypothetical protein 307273..307422 Chlorobium limicola DSM 245 6353787 YP_001942345.1 CDS Clim_0271 NC_010803.1 307440 308363 D PFAM: lipid A biosynthesis acyltransferase; KEGG: pvi:Cvib_0671 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 307440..308363 Chlorobium limicola DSM 245 6353788 YP_001942346.1 CDS Clim_0272 NC_010803.1 308490 310394 D PFAM: ABC transporter transmembrane region; ABC transporter; SMART: AAA ATPase; KEGG: pvi:Cvib_0672 ABC transporter; ABC transporter 308490..310394 Chlorobium limicola DSM 245 6353789 YP_001942347.1 CDS Clim_0273 NC_010803.1 310396 311148 R hypothetical protein complement(310396..311148) Chlorobium limicola DSM 245 6353790 YP_001942348.1 CDS Clim_0274 NC_010803.1 311145 312224 R KEGG: bcl:ABC1230 hypothetical protein; hypothetical protein complement(311145..312224) Chlorobium limicola DSM 245 6353791 YP_001942349.1 CDS Clim_0276 NC_010803.1 313262 313435 R hypothetical protein complement(313262..313435) Chlorobium limicola DSM 245 6353793 YP_001942350.1 CDS Clim_0277 NC_010803.1 314096 315160 R PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1477 glycosyl transferase; group 1 glycosyl transferase complement(314096..315160) Chlorobium limicola DSM 245 6353794 YP_001942351.1 CDS Clim_0278 NC_010803.1 315222 316952 R PFAM: glycosyl transferase family 2; KEGG: nar:Saro_0724 glycosyl transferase, family 2; family 2 glycosyl transferase complement(315222..316952) Chlorobium limicola DSM 245 6353795 YP_001942352.1 CDS Clim_0279 NC_010803.1 316964 318121 R PFAM: glycosyl transferase group 1; KEGG: mca:MCA2124 colanic acid biosynthesis glycosyl transferase; group 1 glycosyl transferase complement(316964..318121) Chlorobium limicola DSM 245 6353796 YP_001942353.1 CDS Clim_0280 NC_010803.1 318132 319298 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: amr:AM1_4475 aminotransferase, DegT/DnrJ/EryC1/StrS family; DegT/DnrJ/EryC1/StrS aminotransferase complement(318132..319298) Chlorobium limicola DSM 245 6353797 YP_001942354.1 CDS Clim_0281 NC_010803.1 319655 320701 R PFAM: glycosyl transferase family 9; KEGG: cte:CT0221 heptosyltransferase; glycosyl transferase family protein complement(319655..320701) Chlorobium limicola DSM 245 6353798 YP_001942355.1 CDS Clim_0282 NC_010803.1 320698 321792 R PFAM: glycosyl transferase group 1; KEGG: cte:CT0224 glycosyl transferase; group 1 glycosyl transferase complement(320698..321792) Chlorobium limicola DSM 245 6353799 YP_001942356.1 CDS Clim_0283 NC_010803.1 321789 322871 R PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1475 glycosyl transferase; group 1 glycosyl transferase complement(321789..322871) Chlorobium limicola DSM 245 6353800 YP_001942357.1 CDS Clim_0284 NC_010803.1 323106 323684 D KEGG: pvi:Cvib_0691 hypothetical protein; hypothetical protein 323106..323684 Chlorobium limicola DSM 245 6353801 YP_001942358.1 CDS Clim_0285 NC_010803.1 323713 324882 R PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1473 hypothetical protein; group 1 glycosyl transferase complement(323713..324882) Chlorobium limicola DSM 245 6353802 YP_001942359.1 CDS Clim_0286 NC_010803.1 324936 326090 R PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_0357 glycosyl transferase, group 1; group 1 glycosyl transferase complement(324936..326090) Chlorobium limicola DSM 245 6353803 YP_001942360.1 CDS Clim_0287 NC_010803.1 326081 326443 R hypothetical protein complement(326081..326443) Chlorobium limicola DSM 245 6353804 YP_001942361.1 CDS Clim_0288 NC_010803.1 326477 326719 R hypothetical protein complement(326477..326719) Chlorobium limicola DSM 245 6353805 YP_001942362.1 CDS Clim_0289 NC_010803.1 326852 327988 R PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_0358 glycosyl transferase, group 1; group 1 glycosyl transferase complement(326852..327988) Chlorobium limicola DSM 245 6353806 YP_001942363.1 CDS Clim_0290 NC_010803.1 328005 328244 R hypothetical protein complement(328005..328244) Chlorobium limicola DSM 245 6353807 YP_001942364.1 CDS Clim_0291 NC_010803.1 328282 329364 R PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1472 glycosyl transferase; group 1 glycosyl transferase complement(328282..329364) Chlorobium limicola DSM 245 6353808 YP_001942365.1 CDS Clim_0292 NC_010803.1 329509 330441 D PFAM: Abortive infection protein; KEGG: cph:Cpha266_0361 abortive infection protein; abortive infection protein 329509..330441 Chlorobium limicola DSM 245 6353809 YP_001942366.1 CDS Clim_0293 NC_010803.1 330472 331293 D PFAM: phosphatidate cytidylyltransferase; KEGG: cph:Cpha266_0362 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 330472..331293 Chlorobium limicola DSM 245 6353810 YP_001942367.1 CDS Clim_0294 NC_010803.1 331423 331893 D TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: cph:Cpha266_0363 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 331423..331893 Chlorobium limicola DSM 245 6353811 YP_001942368.1 CDS hisS NC_010803.1 331922 333214 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 331922..333214 Chlorobium limicola DSM 245 6353812 YP_001942369.1 CDS Clim_0296 NC_010803.1 333211 333465 D PFAM: glutaredoxin 2; KEGG: cph:Cpha266_0365 glutaredoxin 2; glutaredoxin 333211..333465 Chlorobium limicola DSM 245 6353813 YP_001942370.1 CDS Clim_0297 NC_010803.1 333513 333725 D KEGG: cch:Cag_1465 hypothetical protein; hypothetical protein 333513..333725 Chlorobium limicola DSM 245 6353814 YP_001942371.1 CDS Clim_0298 NC_010803.1 333846 334376 D PFAM: protein of unknown function DUF150; KEGG: cph:Cpha266_0367 protein of unknown function DUF150; hypothetical protein 333846..334376 Chlorobium limicola DSM 245 6353815 YP_001942372.1 CDS nusA NC_010803.1 334432 335973 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 334432..335973 Chlorobium limicola DSM 245 6353816 YP_001942373.1 CDS infB NC_010803.1 336040 338898 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 336040..338898 Chlorobium limicola DSM 245 6353817 YP_001942374.1 CDS Clim_0301 NC_010803.1 338914 339273 D PFAM: ribosome-binding factor A; KEGG: plt:Plut_1778 ribosome-binding factor A; ribosome-binding factor A 338914..339273 Chlorobium limicola DSM 245 6353818 YP_001942375.1 CDS Clim_0302 NC_010803.1 339300 340031 D TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: cch:Cag_1460 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 339300..340031 Chlorobium limicola DSM 245 6353819 YP_001942376.1 CDS Clim_0303 NC_010803.1 340039 341004 D TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: cph:Cpha266_0372 riboflavin kinase / FMN adenylyltransferase; riboflavin biosynthesis protein RibF 340039..341004 Chlorobium limicola DSM 245 6353820 YP_001942377.1 CDS rpsO NC_010803.1 341050 341319 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 341050..341319 Chlorobium limicola DSM 245 6353821 YP_001942378.1 CDS Clim_0305 NC_010803.1 341412 342299 D PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: cph:Cpha266_0374 hypothetical protein; hypothetical protein 341412..342299 Chlorobium limicola DSM 245 6353822 YP_001942379.1 CDS gmk NC_010803.1 342307 342885 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 342307..342885 Chlorobium limicola DSM 245 6353823 YP_001942380.1 CDS Clim_0307 NC_010803.1 342897 343250 D KEGG: pvi:Cvib_1554 hypothetical protein; hypothetical protein 342897..343250 Chlorobium limicola DSM 245 6353824 YP_001942381.1 CDS Clim_0308 NC_010803.1 343222 343725 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cte:CT0249 glutathione S-transferase, fosfomycin resistance protein; Glyoxalase/bleomycin resistance protein/dioxygenase 343222..343725 Chlorobium limicola DSM 245 6353825 YP_001942382.1 CDS Clim_0309 NC_010803.1 343748 344482 R PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Nucleotidyl transferase; KEGG: cph:Cpha266_0378 UDP-N-acetylglucosamine pyrophosphorylase; nucleotidyl transferase complement(343748..344482) Chlorobium limicola DSM 245 6353826 YP_001942383.1 CDS Clim_0310 NC_010803.1 344511 344897 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(344511..344897) Chlorobium limicola DSM 245 6353827 YP_001942384.1 CDS Clim_0311 NC_010803.1 344916 345359 R PFAM: protein of unknown function DUF1239; KEGG: cph:Cpha266_0380 hypothetical protein; hypothetical protein complement(344916..345359) Chlorobium limicola DSM 245 6353828 YP_001942385.1 CDS Clim_0312 NC_010803.1 345482 346039 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: pvi:Cvib_1549 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp complement(345482..346039) Chlorobium limicola DSM 245 6353829 YP_001942386.1 CDS Clim_0313 NC_010803.1 346184 346933 R KEGG: cte:CT0222 hypothetical protein; hypothetical protein complement(346184..346933) Chlorobium limicola DSM 245 6353830 YP_001942387.1 CDS Clim_0314 NC_010803.1 346905 348083 R TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: cph:Cpha266_0383 DNA protecting protein DprA; DNA protecting protein DprA complement(346905..348083) Chlorobium limicola DSM 245 6353831 YP_001942388.1 CDS Clim_0315 NC_010803.1 348094 349092 R PFAM: Polyprenyl synthetase; KEGG: cph:Cpha266_0384 polyprenyl synthetase; polyprenyl synthetase complement(348094..349092) Chlorobium limicola DSM 245 6353832 YP_001942389.1 CDS Clim_0316 NC_010803.1 349092 350174 R catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase complement(349092..350174) Chlorobium limicola DSM 245 6353833 YP_001942390.1 CDS Clim_0317 NC_010803.1 350276 351544 D PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_0386 protein of unknown function DUF214; hypothetical protein 350276..351544 Chlorobium limicola DSM 245 6353834 YP_001942391.1 CDS Clim_0318 NC_010803.1 351657 353468 R PFAM: ABC transporter transmembrane region; ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_0387 ABC transporter; ABC transporter complement(351657..353468) Chlorobium limicola DSM 245 6353835 YP_001942392.1 CDS Clim_0319 NC_010803.1 353511 354989 R PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cph:Cpha266_0388 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I complement(353511..354989) Chlorobium limicola DSM 245 6353836 YP_001942393.1 CDS rpsT NC_010803.1 355152 355427 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 355152..355427 Chlorobium limicola DSM 245 6353837 YP_001942394.1 CDS ruvA NC_010803.1 355545 356156 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 355545..356156 Chlorobium limicola DSM 245 6353838 YP_001942395.1 CDS Clim_0322 NC_010803.1 356220 357455 D TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; KEGG: cph:Cpha266_0391 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 356220..357455 Chlorobium limicola DSM 245 6353839 YP_001942396.1 CDS rho NC_010803.1 357766 359055 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 357766..359055 Chlorobium limicola DSM 245 6353840 YP_001942397.1 CDS Clim_0325 NC_010803.1 360483 361298 D PFAM: Methyltransferase type 11; KEGG: pla:Plav_2493 methyltransferase type 11; type 11 methyltransferase 360483..361298 Chlorobium limicola DSM 245 6353844 YP_001942398.1 CDS Clim_0326 NC_010803.1 361305 362069 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pvi:Cvib_1536 electron transfer flavoprotein beta-subunit; Electron transfer flavoprotein subunit alpha/beta 361305..362069 Chlorobium limicola DSM 245 6353845 YP_001942399.1 CDS Clim_0327 NC_010803.1 362074 363045 D PFAM: Electron transfer flavoprotein alpha subunit; KEGG: pvi:Cvib_1535 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 362074..363045 Chlorobium limicola DSM 245 6353846 YP_001942400.1 CDS Clim_0328 NC_010803.1 363118 363720 D PFAM: UvrB/UvrC protein; protein of unknown function DUF151; KEGG: cph:Cpha266_0395 protein of unknown function DUF151; hypothetical protein 363118..363720 Chlorobium limicola DSM 245 6353847 YP_001942401.1 CDS Clim_0329 NC_010803.1 364070 364738 R PFAM: surface antigen msp4 family protein; KEGG: cph:Cpha266_0396 hypothetical protein; surface antigen msp4 family protein complement(364070..364738) Chlorobium limicola DSM 245 6353848 YP_001942402.1 CDS Clim_0330 NC_010803.1 364908 367403 R TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: cph:Cpha266_0397 surface antigen (D15); outer membrane protein assembly complex, YaeT protein complement(364908..367403) Chlorobium limicola DSM 245 6353849 YP_001942403.1 CDS Clim_0331 NC_010803.1 367427 368257 R KEGG: cph:Cpha266_0398 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(367427..368257) Chlorobium limicola DSM 245 6353850 YP_001942404.1 CDS gatA NC_010803.1 368522 369946 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 368522..369946 Chlorobium limicola DSM 245 6353851 YP_001942405.1 CDS Clim_0333 NC_010803.1 369992 370891 D TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: plt:Plut_1748 succinyl-CoA ligase, alpha subunit; succinyl-CoA synthetase subunit alpha 369992..370891 Chlorobium limicola DSM 245 6353852 YP_001942406.1 CDS Clim_0334 NC_010803.1 370967 371947 R KEGG: cph:Cpha266_0401 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein complement(370967..371947) Chlorobium limicola DSM 245 6353853 YP_001942407.1 CDS Clim_0335 NC_010803.1 372071 372427 D KEGG: cph:Cpha266_0402 hypothetical protein; hypothetical protein 372071..372427 Chlorobium limicola DSM 245 6353854 YP_001942408.1 CDS Clim_0336 NC_010803.1 372442 373956 D PFAM: polysaccharide biosynthesis protein; KEGG: cph:Cpha266_0403 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 372442..373956 Chlorobium limicola DSM 245 6354260 YP_001942409.1 CDS Clim_0337 NC_010803.1 374130 374669 R KEGG: plt:Plut_1743 hypothetical protein; hypothetical protein complement(374130..374669) Chlorobium limicola DSM 245 6354331 YP_001942410.1 CDS Clim_0338 NC_010803.1 374808 375377 R KEGG: cph:Cpha266_0405 hypothetical protein; hypothetical protein complement(374808..375377) Chlorobium limicola DSM 245 6354332 YP_001942411.1 CDS Clim_0339 NC_010803.1 375451 375852 R KEGG: cph:Cpha266_0407 hypothetical protein; hypothetical protein complement(375451..375852) Chlorobium limicola DSM 245 6354333 YP_001942412.1 CDS Clim_0340 NC_010803.1 375931 376539 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pvi:Cvib_1522 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit complement(375931..376539) Chlorobium limicola DSM 245 6354334 YP_001942413.1 CDS Clim_0341 NC_010803.1 376714 378096 R PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cph:Cpha266_0410 phosphomannomutase; Phosphoglucomutase complement(376714..378096) Chlorobium limicola DSM 245 6354335 YP_001942414.1 CDS Clim_0342 NC_010803.1 378204 379346 D KEGG: cph:Cpha266_0411 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase 378204..379346 Chlorobium limicola DSM 245 6354336 YP_001942415.1 CDS Clim_0343 NC_010803.1 379354 379629 D KEGG: cph:Cpha266_0412 hypothetical protein; hypothetical protein 379354..379629 Chlorobium limicola DSM 245 6354337 YP_001942416.1 CDS Clim_0344 NC_010803.1 379647 381623 R these proteins belong to a family of oxidoreductases related to the NADPH-dependent glutamate synthase; NADPH-dependent glutamate synthase small subunit complement(379647..381623) Chlorobium limicola DSM 245 6354338 YP_001942417.1 CDS ispH NC_010803.1 381651 382625 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(381651..382625) Chlorobium limicola DSM 245 6354339 YP_001942418.1 CDS Clim_0346 NC_010803.1 382712 383536 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(382712..383536) Chlorobium limicola DSM 245 6354340 YP_001942419.1 CDS Clim_0347 NC_010803.1 383554 384645 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(383554..384645) Chlorobium limicola DSM 245 6354341 YP_001942420.1 CDS cmk NC_010803.1 384764 385477 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 384764..385477 Chlorobium limicola DSM 245 6354342 YP_001942421.1 CDS rpsA NC_010803.1 385593 387353 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 385593..387353 Chlorobium limicola DSM 245 6354343 YP_001942422.1 CDS era NC_010803.1 387462 388379 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(387462..388379) Chlorobium limicola DSM 245 6354344 YP_001942423.1 CDS Clim_0351 NC_010803.1 388480 389703 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: cph:Cpha266_0420 cell cycle protein; rod shape-determining protein RodA 388480..389703 Chlorobium limicola DSM 245 6354345 YP_001942424.1 CDS Clim_0352 NC_010803.1 389931 391307 D KEGG: cph:Cpha266_0422 RNA modification enzyme, MiaB family; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 389931..391307 Chlorobium limicola DSM 245 6354346 YP_001942425.1 CDS Clim_0353 NC_010803.1 391368 391901 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 391368..391901 Chlorobium limicola DSM 245 6354347 YP_001942426.1 CDS Clim_0354 NC_010803.1 391909 393369 D KEGG: plt:Plut_1726 hypothetical protein; hypothetical protein 391909..393369 Chlorobium limicola DSM 245 6354348 YP_001942427.1 CDS Clim_0355 NC_010803.1 393381 393767 D KEGG: pvi:Cvib_1507 hypothetical protein; hypothetical protein 393381..393767 Chlorobium limicola DSM 245 6354349 YP_001942428.1 CDS Clim_0356 NC_010803.1 393800 394108 R PFAM: histone family protein DNA-binding protein; KEGG: cph:Cpha266_0424 histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(393800..394108) Chlorobium limicola DSM 245 6354350 YP_001942429.1 CDS Clim_0357 NC_010803.1 394145 394510 R KEGG: cph:Cpha266_0425 hypothetical protein; hypothetical protein complement(394145..394510) Chlorobium limicola DSM 245 6354351 YP_001942430.1 CDS Clim_0358 NC_010803.1 394554 396512 R KEGG: cph:Cpha266_0426 FtsH peptidase. Metallo peptidase. MEROPS family M41; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(394554..396512) Chlorobium limicola DSM 245 6354352 YP_001942431.1 CDS gltX NC_010803.1 396778 398286 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 396778..398286 Chlorobium limicola DSM 245 6354353 YP_001942432.1 CDS Clim_0360 NC_010803.1 398591 399721 D PFAM: hydroxyneurosporene synthase; KEGG: cph:Cpha266_0428 hydroxyneurosporene synthase; hydroxyneurosporene synthase 398591..399721 Chlorobium limicola DSM 245 6354355 YP_001942433.1 CDS Clim_0361 NC_010803.1 399875 400420 D PFAM: Rieske [2Fe-2S] domain protein; Cytochrome b6-f complex Fe-S subunit; KEGG: cph:Cpha266_0429 Plastoquinol--plastocyanin reductase; Plastoquinol--plastocyanin reductase 399875..400420 Chlorobium limicola DSM 245 6354356 YP_001942434.1 CDS Clim_0362 NC_010803.1 400457 401746 D PFAM: Cytochrome b/b6 domain; KEGG: plt:Plut_1718 cytochrome b-c complex, cytochrome b subunit; Cytochrome b/b6 domain 400457..401746 Chlorobium limicola DSM 245 6354357 YP_001942435.1 CDS Clim_0363 NC_010803.1 401836 405354 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cph:Cpha266_0431 alpha amylase, catalytic region; alpha amylase complement(401836..405354) Chlorobium limicola DSM 245 6354358 YP_001942436.1 CDS Clim_0364 NC_010803.1 405364 405540 D hypothetical protein 405364..405540 Chlorobium limicola DSM 245 6354359 YP_001942437.1 CDS Clim_0365 NC_010803.1 405710 406096 R KEGG: cph:Cpha266_0432 hypothetical protein; hypothetical protein complement(405710..406096) Chlorobium limicola DSM 245 6354360 YP_001942438.1 CDS Clim_0366 NC_010803.1 406083 406478 R KEGG: cph:Cpha266_0433 hypothetical protein; hypothetical protein complement(406083..406478) Chlorobium limicola DSM 245 6354361 YP_001942439.1 CDS Clim_0367 NC_010803.1 406508 406777 R KEGG: cph:Cpha266_0434 hypothetical protein; hypothetical protein complement(406508..406777) Chlorobium limicola DSM 245 6354362 YP_001942440.1 CDS Clim_0368 NC_010803.1 406835 407542 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cte:CT1766 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR complement(406835..407542) Chlorobium limicola DSM 245 6354363 YP_001942441.1 CDS Clim_0369 NC_010803.1 407679 408467 R PFAM: protein of unknown function DUF81; KEGG: cte:CT1829 hypothetical protein; hypothetical protein complement(407679..408467) Chlorobium limicola DSM 245 6354364 YP_001942442.1 CDS Clim_0370 NC_010803.1 408472 408597 R hypothetical protein complement(408472..408597) Chlorobium limicola DSM 245 6354365 YP_001942443.1 CDS Clim_0371 NC_010803.1 408774 409682 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_0438 ABC transporter; ABC transporter complement(408774..409682) Chlorobium limicola DSM 245 6354366 YP_001942444.1 CDS Clim_0372 NC_010803.1 409679 410347 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sun:SUN_2103 molybdenum ABC transporter, permease; molybdate ABC transporter inner membrane subunit complement(409679..410347) Chlorobium limicola DSM 245 6354367 YP_001942445.1 CDS Clim_0373 NC_010803.1 410337 410738 R PFAM: TOBE domain protein; KEGG: cph:Cpha266_0439 TOBE domain protein; TOBE domain-containing protein complement(410337..410738) Chlorobium limicola DSM 245 6354368 YP_001942446.1 CDS Clim_0374 NC_010803.1 410731 411525 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: mca:MCA1378 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(410731..411525) Chlorobium limicola DSM 245 6354369 YP_001942447.1 CDS Clim_0375 NC_010803.1 411530 412375 R TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: cph:Cpha266_0455 ModD protein; modD protein complement(411530..412375) Chlorobium limicola DSM 245 6354370 YP_001942448.1 CDS Clim_0376 NC_010803.1 413547 414575 D KEGG: cch:Cag_0501 periplasmic phosphate binding protein; phosphate binding protein 413547..414575 Chlorobium limicola DSM 245 6354371 YP_001942449.1 CDS Clim_0377 NC_010803.1 414690 415931 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cch:Cag_0500 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter permease 414690..415931 Chlorobium limicola DSM 245 6354372 YP_001942450.1 CDS Clim_0378 NC_010803.1 415951 417114 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cch:Cag_0499 phosphate transport system permease protein 2; phosphate ABC transporter permease 415951..417114 Chlorobium limicola DSM 245 6354373 YP_001942451.1 CDS Clim_0379 NC_010803.1 417148 417912 D KEGG: cch:Cag_0498 phosphate transport system permease protein 1; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter; SMART: AAA ATPase; phosphate ABC transporter ATPase 417148..417912 Chlorobium limicola DSM 245 6354374 YP_001942452.1 CDS Clim_0380 NC_010803.1 417956 418654 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: cch:Cag_0974 PhoU; phosphate uptake regulator PhoU 417956..418654 Chlorobium limicola DSM 245 6354375 YP_001942453.1 CDS Clim_0381 NC_010803.1 418702 419136 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: plt:Plut_0062 protein tyrosine phosphatase; protein tyrosine phosphatase 418702..419136 Chlorobium limicola DSM 245 6354376 YP_001942454.1 CDS Clim_0382 NC_010803.1 419254 421818 R TIGRFAM: arsenite oxidase, large subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: ttj:TTHB127 arsenite oxidase, large subunit; arsenite oxidase, large subunit complement(419254..421818) Chlorobium limicola DSM 245 6354377 YP_001942455.1 CDS Clim_0383 NC_010803.1 421831 422322 R TIGRFAM: arsenite oxidase, small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: ttj:TTHB128 arsenite oxidase, small subunit; arsenite oxidase, small subunit complement(421831..422322) Chlorobium limicola DSM 245 6354378 YP_001942456.1 CDS frr NC_010803.1 422609 423169 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(422609..423169) Chlorobium limicola DSM 245 6354379 YP_001942457.1 CDS rpmE NC_010803.1 423217 423444 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(423217..423444) Chlorobium limicola DSM 245 6354380 YP_001942458.1 CDS Clim_0386 NC_010803.1 423547 425667 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 423547..425667 Chlorobium limicola DSM 245 6354381 YP_001942459.1 CDS Clim_0387 NC_010803.1 425704 426660 D TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: pvi:Cvib_0411 ribosome small subunit-dependent GTPase A; ribosome small subunit-dependent GTPase A 425704..426660 Chlorobium limicola DSM 245 6354382 YP_001942460.1 CDS Clim_0388 NC_010803.1 426706 428082 D PFAM: Aldehyde Dehydrogenase_; KEGG: cph:Cpha266_2070 aldehyde dehydrogenase; aldehyde dehydrogenase 426706..428082 Chlorobium limicola DSM 245 6354383 YP_001942461.1 CDS Clim_0389 NC_010803.1 428162 429376 R KEGG: plt:Plut_0353 hypothetical protein; hypothetical protein complement(428162..429376) Chlorobium limicola DSM 245 6354384 YP_001942462.1 CDS Clim_0390 NC_010803.1 429504 430706 R KEGG: cte:CT1571 hypothetical protein; hypothetical protein complement(429504..430706) Chlorobium limicola DSM 245 6354385 YP_001942463.1 CDS Clim_0391 NC_010803.1 430864 431412 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cph:Cpha266_2040 protein tyrosine phosphatase; protein tyrosine phosphatase 430864..431412 Chlorobium limicola DSM 245 6354386 YP_001942464.1 CDS Clim_0392 NC_010803.1 431412 432314 D PFAM: diacylglycerol kinase catalytic region; KEGG: cph:Cpha266_2039 diacylglycerol kinase, catalytic region; diacylglycerol kinase catalytic subunit 431412..432314 Chlorobium limicola DSM 245 6354387 YP_001942465.1 CDS Clim_0393 NC_010803.1 432350 433606 D KEGG: cph:Cpha266_2038 hypothetical protein; hypothetical protein 432350..433606 Chlorobium limicola DSM 245 6354388 YP_001942466.1 CDS Clim_0394 NC_010803.1 433626 434192 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 433626..434192 Chlorobium limicola DSM 245 6354389 YP_001942467.1 CDS Clim_0395 NC_010803.1 434192 434929 D PFAM: conserved hypothetical protein; KEGG: plt:Plut_0357 hypothetical protein; hypothetical protein 434192..434929 Chlorobium limicola DSM 245 6354390 YP_001942468.1 CDS Clim_0396 NC_010803.1 434889 435377 R KEGG: pvi:Cvib_0417 hypothetical protein; hypothetical protein complement(434889..435377) Chlorobium limicola DSM 245 6354391 YP_001942469.1 CDS Clim_0397 NC_010803.1 435433 435765 D KEGG: cph:Cpha266_2036 Fis family transcriptional regulator; Fis family transcriptional regulator 435433..435765 Chlorobium limicola DSM 245 6354392 YP_001942470.1 CDS Clim_0398 NC_010803.1 435776 437008 D KEGG: cph:Cpha266_1807 hypothetical protein; hypothetical protein 435776..437008 Chlorobium limicola DSM 245 6354393 YP_001942471.1 CDS Clim_0399 NC_010803.1 437005 437805 D PFAM: cytochrome c assembly protein; KEGG: cte:CT1559 cytochrome c biogenesis protein; cytochrome c assembly protein 437005..437805 Chlorobium limicola DSM 245 6354394 YP_001942472.1 CDS Clim_0400 NC_010803.1 437821 439512 R KEGG: cph:Cpha266_2035 hypothetical protein; hypothetical protein complement(437821..439512) Chlorobium limicola DSM 245 6354395 YP_001942473.1 CDS Clim_0401 NC_010803.1 439517 440293 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(439517..440293) Chlorobium limicola DSM 245 6354396 YP_001942474.1 CDS Clim_0402 NC_010803.1 440360 443212 R PFAM: surface antigen (D15); Patatin; KEGG: cph:Cpha266_2033 patatin; surface antigen (D15) complement(440360..443212) Chlorobium limicola DSM 245 6354397 YP_001942475.1 CDS Clim_0403 NC_010803.1 443255 444094 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: cph:Cpha266_2032 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; acetyl-CoA carboxylase, carboxyl transferase subunit beta 443255..444094 Chlorobium limicola DSM 245 6354398 YP_001942476.1 CDS thyX NC_010803.1 444104 444757 R flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase complement(444104..444757) Chlorobium limicola DSM 245 6354399 YP_001942477.1 CDS Clim_0405 NC_010803.1 445024 445701 D KEGG: pvi:Cvib_0441 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 445024..445701 Chlorobium limicola DSM 245 6354400 YP_001942478.1 CDS valS NC_010803.1 445751 448465 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 445751..448465 Chlorobium limicola DSM 245 6354401 YP_001942479.1 CDS Clim_0407 NC_010803.1 448619 449518 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: cph:Cpha266_2028 RNA polymerase, sigma 32 subunit, RpoH; RNA polymerase sigma-32 subunit RpoH 448619..449518 Chlorobium limicola DSM 245 6354402 YP_001942480.1 CDS Clim_0408 NC_010803.1 449554 450387 R PFAM: protein of unknown function DUF62; KEGG: cph:Cpha266_2027 protein of unknown function DUF62; hypothetical protein complement(449554..450387) Chlorobium limicola DSM 245 6354403 YP_001942481.1 CDS Clim_0409 NC_010803.1 450384 451466 R PFAM: permease YjgP/YjgQ family protein; KEGG: cph:Cpha266_2026 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease complement(450384..451466) Chlorobium limicola DSM 245 6354404 YP_001942482.1 CDS Clim_0410 NC_010803.1 451547 454486 R PFAM: peptidase M16 domain protein; KEGG: cph:Cpha266_2025 peptidase M16 domain protein; peptidase M16 domain-containing protein complement(451547..454486) Chlorobium limicola DSM 245 6354405 YP_001942483.1 CDS Clim_0411 NC_010803.1 454694 456748 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 454694..456748 Chlorobium limicola DSM 245 6354406 YP_001942484.1 CDS Clim_0412 NC_010803.1 456854 459055 D KEGG: plt:Plut_0392 metal dependent phosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 456854..459055 Chlorobium limicola DSM 245 6354407 YP_001942485.1 CDS Clim_0413 NC_010803.1 459137 459733 D PFAM: LemA family protein; KEGG: cph:Cpha266_2022 LemA family protein; LemA family protein 459137..459733 Chlorobium limicola DSM 245 6354408 YP_001942486.1 CDS Clim_0414 NC_010803.1 459748 460488 D PFAM: protein of unknown function DUF477; KEGG: cph:Cpha266_2021 protein of unknown function DUF477; hypothetical protein 459748..460488 Chlorobium limicola DSM 245 6354409 YP_001942487.1 CDS Clim_0415 NC_010803.1 460520 461167 D PFAM: protein of unknown function DUF477; KEGG: cph:Cpha266_2020 protein of unknown function DUF477; hypothetical protein 460520..461167 Chlorobium limicola DSM 245 6354410 YP_001942488.1 CDS Clim_0416 NC_010803.1 461167 461343 D KEGG: cph:Cpha266_2019 hypothetical protein; hypothetical protein 461167..461343 Chlorobium limicola DSM 245 6354411 YP_001942489.1 CDS gcvT NC_010803.1 461542 462630 D catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 461542..462630 Chlorobium limicola DSM 245 6354412 YP_001942490.1 CDS Clim_0418 NC_010803.1 462726 465170 D PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: cph:Cpha266_2016 cell divisionFtsK/SpoIIIE; cell division protein FtsK 462726..465170 Chlorobium limicola DSM 245 6354413 YP_001942491.1 CDS Clim_0419 NC_010803.1 465277 465537 R PFAM: nitrogen-fixing NifU domain protein; KEGG: plt:Plut_0398 NifU protein; nitrogen-fixing NifU domain-containing protein complement(465277..465537) Chlorobium limicola DSM 245 6354414 YP_001942492.1 CDS Clim_0420 NC_010803.1 465630 466712 R PFAM: protein of unknown function DUF59; KEGG: cph:Cpha266_2014 protein of unknown function DUF59; hypothetical protein complement(465630..466712) Chlorobium limicola DSM 245 6354415 YP_001942493.1 CDS engA NC_010803.1 466768 468081 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(466768..468081) Chlorobium limicola DSM 245 6354416 YP_001942494.1 CDS rplM NC_010803.1 468233 468682 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 468233..468682 Chlorobium limicola DSM 245 6354417 YP_001942495.1 CDS rpsI NC_010803.1 468700 469089 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 468700..469089 Chlorobium limicola DSM 245 6354418 YP_001942496.1 CDS rpsB NC_010803.1 469255 470025 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 469255..470025 Chlorobium limicola DSM 245 6354419 YP_001942497.1 CDS tsf NC_010803.1 470075 470941 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 470075..470941 Chlorobium limicola DSM 245 6354420 YP_001942498.1 CDS pyrH NC_010803.1 471031 471750 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 471031..471750 Chlorobium limicola DSM 245 6354421 YP_001942499.1 CDS recX NC_010803.1 471747 472226 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(471747..472226) Chlorobium limicola DSM 245 6354422 YP_001942500.1 CDS Clim_0428 NC_010803.1 472327 472743 D PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0513 NUDIX hydrolase; NUDIX hydrolase 472327..472743 Chlorobium limicola DSM 245 6354423 YP_001942501.1 CDS Clim_0429 NC_010803.1 472873 474114 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cph:Cpha266_0514 major facilitator superfamily MFS_1; major facilitator superfamily protein 472873..474114 Chlorobium limicola DSM 245 6354424 YP_001942502.1 CDS Clim_0430 NC_010803.1 474349 482454 D PFAM: Hemolysin-type calcium-binding region; Alkaline phosphatase; metallophosphoesterase; Ig family protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: cch:Cag_0406 alkaline phosphatase; metallophosphoesterase 474349..482454 Chlorobium limicola DSM 245 6354425 YP_001942503.1 CDS Clim_0431 NC_010803.1 482572 483384 R KEGG: mag:amb0666 hypothetical protein; hypothetical protein complement(482572..483384) Chlorobium limicola DSM 245 6354426 YP_001942504.1 CDS Clim_0432 NC_010803.1 483713 484708 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cph:Cpha266_0749 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 483713..484708 Chlorobium limicola DSM 245 6354427 YP_001942505.1 CDS Clim_0433 NC_010803.1 484768 485769 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cte:CT0576 NAD(P)-dependent cholesterol dehydrogenase; NAD-dependent epimerase/dehydratase 484768..485769 Chlorobium limicola DSM 245 6354428 YP_001942506.1 CDS Clim_0434 NC_010803.1 486063 486482 D KEGG: cph:Cpha266_1269 cytochrome c, class I; cytochrome c, class I 486063..486482 Chlorobium limicola DSM 245 6354429 YP_001942507.1 CDS Clim_0435 NC_010803.1 486497 487330 D KEGG: cph:Cpha266_1270 hypothetical protein; hypothetical protein 486497..487330 Chlorobium limicola DSM 245 6354430 YP_001942508.1 CDS Clim_0436 NC_010803.1 487506 487775 D KEGG: gur:Gura_2922 transcriptional regulator; hypothetical protein 487506..487775 Chlorobium limicola DSM 245 6354431 YP_001942509.1 CDS Clim_0437 NC_010803.1 488375 489355 D KEGG: cph:Cpha266_1438 hypothetical protein; hypothetical protein 488375..489355 Chlorobium limicola DSM 245 6354432 YP_001942510.1 CDS Clim_0438 NC_010803.1 489413 490213 D TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57; KEGG: cph:Cpha266_2044 CRISPR-associated protein Cas6; CRISPR-associated protein Cas6 489413..490213 Chlorobium limicola DSM 245 6354433 YP_001942511.1 CDS Clim_0439 NC_010803.1 490315 491397 D KEGG: sfu:Sfum_3180 hypothetical protein; hypothetical protein 490315..491397 Chlorobium limicola DSM 245 6354434 YP_001942512.1 CDS Clim_0440 NC_010803.1 491387 492178 D KEGG: cph:Cpha266_0283 hypothetical protein; hypothetical protein 491387..492178 Chlorobium limicola DSM 245 6354435 YP_001942513.1 CDS Clim_0441 NC_010803.1 492171 493559 D TIGRFAM: CRISPR-associated CXXC_CXXC protein Cst1; PFAM: CRISPR-associated protein CXXC_CXXC region; KEGG: msi:Msm_0169 predicted CRISPR-associated protein; CRISPR-associated CXXC_CXXC protein Cst1 492171..493559 Chlorobium limicola DSM 245 6354436 YP_001942514.1 CDS Clim_0442 NC_010803.1 493582 494607 D TIGRFAM: CRISPR-associated autoregulator DevR family; CRISPR-associated regulatory protein, DevR family; KEGG: mac:MA3667 hypothetical protein; DevR family CRISPR-associated autoregulator 493582..494607 Chlorobium limicola DSM 245 6354437 YP_001942515.1 CDS Clim_0443 NC_010803.1 494610 495230 D TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: mba:Mbar_A0308 hypothetical protein; CRISPR-associated protein Cas5 family 494610..495230 Chlorobium limicola DSM 245 6354438 YP_001942516.1 CDS Clim_0444 NC_010803.1 495232 497484 D KEGG: mba:Mbar_A0309 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; CRISPR-associated helicase Cas3 495232..497484 Chlorobium limicola DSM 245 6354439 YP_001942517.1 CDS Clim_0445 NC_010803.1 497489 498643 D TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: fnu:FN1177 hypothetical protein; CRISPR-associated protein Cas1 497489..498643 Chlorobium limicola DSM 245 6354440 YP_001942518.1 CDS Clim_0446 NC_010803.1 498775 499035 D TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: tma:TM1796 hypothetical protein; CRISPR-associated protein Cas2 498775..499035 Chlorobium limicola DSM 245 6354441 YP_001942519.1 CDS Clim_0447 NC_010803.1 499042 499542 D TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: pgi:PG2015 CRISPR-associated protein Cas4; CRISPR-associated protein Cas4 499042..499542 Chlorobium limicola DSM 245 6354442 YP_001942520.1 CDS Clim_0448 NC_010803.1 508433 510424 D KEGG: cph:Cpha266_2380 hypothetical protein; hypothetical protein 508433..510424 Chlorobium limicola DSM 245 6354443 YP_001942521.1 CDS Clim_0449 NC_010803.1 510427 510612 D hypothetical protein 510427..510612 Chlorobium limicola DSM 245 6354444 YP_001942522.1 CDS Clim_0450 NC_010803.1 510631 510876 D KEGG: cph:Cpha266_2381 hypothetical protein; hypothetical protein 510631..510876 Chlorobium limicola DSM 245 6354445 YP_001942523.1 CDS Clim_0451 NC_010803.1 510983 512656 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: cph:Cpha266_2382 hypothetical protein; cyclopropane-fatty-acyl-phospholipid synthase 510983..512656 Chlorobium limicola DSM 245 6354446 YP_001942524.1 CDS Clim_0452 NC_010803.1 512845 513864 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 512845..513864 Chlorobium limicola DSM 245 6354447 YP_001942525.1 CDS Clim_0453 NC_010803.1 513899 514474 D KEGG: cph:Cpha266_1809 metal dependent phosphohydrolase; metal dependent phosphohydrolase 513899..514474 Chlorobium limicola DSM 245 6354448 YP_001942526.1 CDS Clim_0454 NC_010803.1 514488 515141 R PFAM: protein of unknown function DUF1003; KEGG: plt:Plut_1664 hypothetical protein; hypothetical protein complement(514488..515141) Chlorobium limicola DSM 245 6354449 YP_001942527.1 CDS Clim_0455 NC_010803.1 515188 518043 R TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter; KEGG: cph:Cpha266_0517 excinuclease ABC subunit A; excinuclease ABC subunit A complement(515188..518043) Chlorobium limicola DSM 245 6354450 YP_001942528.1 CDS Clim_0456 NC_010803.1 518290 518454 D hypothetical protein 518290..518454 Chlorobium limicola DSM 245 6354451 YP_001942529.1 CDS Clim_0457 NC_010803.1 518555 521305 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(518555..521305) Chlorobium limicola DSM 245 6354452 YP_001942530.1 CDS Clim_0458 NC_010803.1 521462 522343 D PFAM: inner-membrane translocator; KEGG: cph:Cpha266_0519 inner-membrane translocator; inner-membrane translocator 521462..522343 Chlorobium limicola DSM 245 6354453 YP_001942531.1 CDS Clim_0459 NC_010803.1 522335 522991 R PFAM: ThiJ/PfpI domain protein; KEGG: cph:Cpha266_0520 isoprenoid biosynthesis protein with amidotransferase-like domain; isoprenoid biosynthesis protein with amidotransferase-like domain complement(522335..522991) Chlorobium limicola DSM 245 6354454 YP_001942532.1 CDS Clim_0460 NC_010803.1 523141 523794 D KEGG: cph:Cpha266_0523 hypothetical protein; hypothetical protein 523141..523794 Chlorobium limicola DSM 245 6354455 YP_001942533.1 CDS Clim_0461 NC_010803.1 523966 524472 R KEGG: cph:Cpha266_0524 hypothetical protein; hypothetical protein complement(523966..524472) Chlorobium limicola DSM 245 6354456 YP_001942534.1 CDS Clim_0462 NC_010803.1 524588 525130 D PFAM: isochorismatase hydrolase; KEGG: cph:Cpha266_0525 isochorismatase hydrolase; isochorismatase hydrolase 524588..525130 Chlorobium limicola DSM 245 6354457 YP_001942535.1 CDS Clim_0463 NC_010803.1 525380 526432 R KEGG: cph:Cpha266_0526 lipid-A-disaccharide synthase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase complement(525380..526432) Chlorobium limicola DSM 245 6354458 YP_001942536.1 CDS Clim_0464 NC_010803.1 526425 527042 R PFAM: protein of unknown function DUF374; KEGG: cph:Cpha266_0527 protein of unknown function DUF374; hypothetical protein complement(526425..527042) Chlorobium limicola DSM 245 6354459 YP_001942537.1 CDS Clim_0465 NC_010803.1 527203 528510 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 527203..528510 Chlorobium limicola DSM 245 6354460 YP_001942538.1 CDS Clim_0466 NC_010803.1 528540 528971 D KEGG: cph:Cpha266_0529 hypothetical protein; hypothetical protein 528540..528971 Chlorobium limicola DSM 245 6354461 YP_001942539.1 CDS Clim_0467 NC_010803.1 529074 530561 D PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: cph:Cpha266_0530 carbamoyl-phosphate synthase large subunit; carbamoyl-phosphate synthase L chain ATP-binding 529074..530561 Chlorobium limicola DSM 245 6354462 YP_001942540.1 CDS trpC NC_010803.1 530558 531334 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 530558..531334 Chlorobium limicola DSM 245 6354463 YP_001942541.1 CDS Clim_0469 NC_010803.1 531315 531980 R PFAM: ribulose-phosphate 3-epimerase; KEGG: cph:Cpha266_0532 ribulose-5-phosphate 3-epimerase; Ribulose-phosphate 3-epimerase complement(531315..531980) Chlorobium limicola DSM 245 6354464 YP_001942542.1 CDS Clim_0470 NC_010803.1 532038 534230 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: cph:Cpha266_0533 surface antigen (D15); surface antigen (D15) complement(532038..534230) Chlorobium limicola DSM 245 6354465 YP_001942543.1 CDS Clim_0471 NC_010803.1 534291 534518 R KEGG: plt:Plut_1647 hypothetical protein; hypothetical protein complement(534291..534518) Chlorobium limicola DSM 245 6354466 YP_001942544.1 CDS Clim_0472 NC_010803.1 534543 535214 R PFAM: Peptidase M23; KEGG: cph:Cpha266_0535 peptidase M23B; peptidase M23 complement(534543..535214) Chlorobium limicola DSM 245 6354467 YP_001942545.1 CDS Clim_0473 NC_010803.1 535392 538223 R KEGG: cph:Cpha266_0536 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I complement(535392..538223) Chlorobium limicola DSM 245 6354468 YP_001942546.1 CDS Clim_0474 NC_010803.1 538220 539059 R PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: cph:Cpha266_0537 prephenate dehydratase; Prephenate dehydratase complement(538220..539059) Chlorobium limicola DSM 245 6354469 YP_001942547.1 CDS Clim_0475 NC_010803.1 539179 539931 D PFAM: protein of unknown function DUF28; KEGG: cch:Cag_0165 hypothetical protein; hypothetical protein 539179..539931 Chlorobium limicola DSM 245 6354470 YP_001942548.1 CDS Clim_0476 NC_010803.1 539937 540509 D KEGG: cph:Cpha266_0539 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC 539937..540509 Chlorobium limicola DSM 245 6354471 YP_001942549.1 CDS Clim_0477 NC_010803.1 540558 541124 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pvi:Cvib_1430 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 540558..541124 Chlorobium limicola DSM 245 6354472 YP_001942550.1 CDS Clim_0478 NC_010803.1 541170 542201 D PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 TPR repeat; hypothetical protein 541170..542201 Chlorobium limicola DSM 245 6354473 YP_001942551.1 CDS Clim_0479 NC_010803.1 542291 542962 R alkyl hydroperoxidase; catalyze the reduction of hydrogen peroxide to water and the reduction of alkyl hydroperoxides to the corresponding alcohols; peroxiredoxin complement(542291..542962) Chlorobium limicola DSM 245 6354474 YP_001942552.1 CDS Clim_0480 NC_010803.1 543225 543719 D PFAM: ferric-uptake regulator; KEGG: cph:Cpha266_1963 ferric uptake regulator, Fur family; Fur family ferric uptake regulator 543225..543719 Chlorobium limicola DSM 245 6354475 YP_001942553.1 CDS Clim_0481 NC_010803.1 543788 544453 R KEGG: plt:Plut_2079 Fibrobacter succinogenes major paralogous domain; hypothetical protein complement(543788..544453) Chlorobium limicola DSM 245 6354476 YP_001942554.1 CDS Clim_0482 NC_010803.1 544723 547098 D KEGG: cph:Cpha266_1962 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein; ribonuclease R 544723..547098 Chlorobium limicola DSM 245 6354477 YP_001942555.1 CDS Clim_0483 NC_010803.1 547137 547850 R PFAM: glutamine amidotransferase class-I; KEGG: cph:Cpha266_1960 glutamine amidotransferase class-I; glutamine amidotransferase complement(547137..547850) Chlorobium limicola DSM 245 6354478 YP_001942556.1 CDS Clim_0484 NC_010803.1 547894 550437 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cph:Cpha266_1957 multi-sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase complement(547894..550437) Chlorobium limicola DSM 245 6354479 YP_001942557.1 CDS Clim_0485 NC_010803.1 550833 552077 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: cph:Cpha266_1956 hypothetical protein; hypothetical protein 550833..552077 Chlorobium limicola DSM 245 6354480 YP_001942558.1 CDS Clim_0486 NC_010803.1 552118 552468 R hypothetical protein complement(552118..552468) Chlorobium limicola DSM 245 6354481 YP_001942559.1 CDS Clim_0487 NC_010803.1 552506 552910 R SMART: Rhodanese domain protein; KEGG: pvi:Cvib_0577 rhodanese domain protein; rhodanese domain-containing protein complement(552506..552910) Chlorobium limicola DSM 245 6354482 YP_001942560.1 CDS Clim_0488 NC_010803.1 553458 553694 R hypothetical protein complement(553458..553694) Chlorobium limicola DSM 245 6354484 YP_001942561.1 CDS Clim_0489 NC_010803.1 553743 553856 R hypothetical protein complement(553743..553856) Chlorobium limicola DSM 245 6354835 YP_001942562.1 CDS Clim_0490 NC_010803.1 554245 554622 D KEGG: rso:RS02604 HNS-like transcription regulator protein; hypothetical protein 554245..554622 Chlorobium limicola DSM 245 6354836 YP_001942563.1 CDS Clim_0491 NC_010803.1 555247 556446 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(555247..556446) Chlorobium limicola DSM 245 6354838 YP_001942564.1 CDS Clim_0492 NC_010803.1 556662 559310 D KEGG: cph:Cpha266_1942 hypothetical protein; hypothetical protein 556662..559310 Chlorobium limicola DSM 245 6354839 YP_001942565.1 CDS Clim_0493 NC_010803.1 559326 560198 R PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_1941 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(559326..560198) Chlorobium limicola DSM 245 6354840 YP_001942566.1 CDS Clim_0494 NC_010803.1 560329 560760 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: plt:Plut_0538 hypothetical protein; BadM/Rrf2 family transcriptional regulator 560329..560760 Chlorobium limicola DSM 245 6354841 YP_001942567.1 CDS Clim_0495 NC_010803.1 560847 563705 D TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter; KEGG: cph:Cpha266_1939 excinuclease ABC subunit A; excinuclease ABC subunit A 560847..563705 Chlorobium limicola DSM 245 6354842 YP_001942568.1 CDS Clim_0496 NC_010803.1 563719 564114 R KEGG: pvi:Cvib_0584 hypothetical protein; hypothetical protein complement(563719..564114) Chlorobium limicola DSM 245 6354843 YP_001942569.1 CDS groES NC_010803.1 564194 564481 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 564194..564481 Chlorobium limicola DSM 245 6354844 YP_001942570.1 CDS groEL NC_010803.1 564527 566170 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 564527..566170 Chlorobium limicola DSM 245 6354845 YP_001942571.1 CDS Clim_0499 NC_010803.1 566307 566987 D TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: plt:Plut_0543 ExsB; exsB protein 566307..566987 Chlorobium limicola DSM 245 6354846 YP_001942572.1 CDS Clim_0500 NC_010803.1 567006 567812 D PFAM: Abortive infection protein; KEGG: cph:Cpha266_1934 abortive infection protein; abortive infection protein 567006..567812 Chlorobium limicola DSM 245 6354847 YP_001942573.1 CDS trpA NC_010803.1 567835 568638 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 567835..568638 Chlorobium limicola DSM 245 6354848 YP_001942574.1 CDS Clim_0502 NC_010803.1 568652 569719 D PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1932 glycosyl transferase, family 2; family 2 glycosyl transferase 568652..569719 Chlorobium limicola DSM 245 6354849 YP_001942575.1 CDS Clim_0503 NC_010803.1 569688 570728 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: pvi:Cvib_0591 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(569688..570728) Chlorobium limicola DSM 245 6354850 YP_001942576.1 CDS Clim_0504 NC_010803.1 570784 571326 R PFAM: cyclase/dehydrase; KEGG: cph:Cpha266_1930 cyclase/dehydrase; cyclase/dehydrase complement(570784..571326) Chlorobium limicola DSM 245 6354851 YP_001942577.1 CDS Clim_0505 NC_010803.1 571354 571764 R PFAM: thioesterase superfamily protein; KEGG: cph:Cpha266_1929 thioesterase superfamily protein; thioesterase superfamily protein complement(571354..571764) Chlorobium limicola DSM 245 6354852 YP_001942578.1 CDS Clim_0506 NC_010803.1 571984 572442 D KEGG: mfa:Mfla_1836 hypothetical protein; hypothetical protein 571984..572442 Chlorobium limicola DSM 245 6354853 YP_001942579.1 CDS Clim_0508 NC_010803.1 572982 573362 D PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: cph:Cpha266_1928 protein of unknown function DUF306, MetA and HslJ; hypothetical protein 572982..573362 Chlorobium limicola DSM 245 6354855 YP_001942580.1 CDS Clim_0509 NC_010803.1 573451 574425 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: cph:Cpha266_1368 Na+/Ca+ antiporter, CaCA family; CaCA family Na+/Ca+ antiporter 573451..574425 Chlorobium limicola DSM 245 6354856 YP_001942581.1 CDS Clim_0510 NC_010803.1 574439 575644 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; S-adenosylmethionine synthetase complement(574439..575644) Chlorobium limicola DSM 245 6354857 YP_001942582.1 CDS Clim_0511 NC_010803.1 575813 576958 D PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_0799 glycosyl transferase, group 1; group 1 glycosyl transferase 575813..576958 Chlorobium limicola DSM 245 6354858 YP_001942583.1 CDS Clim_0512 NC_010803.1 576981 578009 R KEGG: plt:Plut_0553 cell shape determining protein MreB/Mrl; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; SMART: actin/actin family protein; rod shape-determining protein MreB complement(576981..578009) Chlorobium limicola DSM 245 6354859 YP_001942584.1 CDS hisD NC_010803.1 578273 579559 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 578273..579559 Chlorobium limicola DSM 245 6354860 YP_001942585.1 CDS Clim_0514 NC_010803.1 579556 580587 D TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: pvi:Cvib_0597 queuosine biosynthesis protein; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 579556..580587 Chlorobium limicola DSM 245 6354861 YP_001942586.1 CDS Clim_0515 NC_010803.1 580889 583459 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 580889..583459 Chlorobium limicola DSM 245 6354862 YP_001942587.1 CDS Clim_0516 NC_010803.1 583661 583810 R hypothetical protein complement(583661..583810) Chlorobium limicola DSM 245 6354863 YP_001942588.1 CDS Clim_0517 NC_010803.1 584207 584719 R hypothetical protein complement(584207..584719) Chlorobium limicola DSM 245 6354864 YP_001942589.1 CDS Clim_0518 NC_010803.1 585521 585682 D hypothetical protein 585521..585682 Chlorobium limicola DSM 245 6354865 YP_001942590.1 CDS Clim_0519 NC_010803.1 586066 586359 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: neu:NE1339 H-NS histone family; histone family protein nucleoid-structuring protein H-NS 586066..586359 Chlorobium limicola DSM 245 6354866 YP_001942591.1 CDS Clim_0520 NC_010803.1 586947 587846 R PFAM: Auxin Efflux Carrier; KEGG: cph:Cpha266_0806 auxin efflux carrier; auxin efflux carrier complement(586947..587846) Chlorobium limicola DSM 245 6354868 YP_001942592.1 CDS Clim_0521 NC_010803.1 588243 589517 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(588243..589517) Chlorobium limicola DSM 245 6354872 YP_001942593.1 CDS Clim_0522 NC_010803.1 589710 591260 D PFAM: Peptidase M23; KEGG: cph:Cpha266_0808 peptidase M23B; peptidase M23 589710..591260 Chlorobium limicola DSM 245 6354873 YP_001942594.1 CDS Clim_0523 NC_010803.1 591266 591820 D KEGG: plt:Plut_0563 hypothetical protein; hypothetical protein 591266..591820 Chlorobium limicola DSM 245 6354874 YP_001942595.1 CDS Clim_0524 NC_010803.1 591817 592668 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 591817..592668 Chlorobium limicola DSM 245 6354875 YP_001942596.1 CDS Clim_0525 NC_010803.1 592789 594384 R KEGG: pvi:Cvib_1210 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; L-aspartate oxidase complement(592789..594384) Chlorobium limicola DSM 245 6354876 YP_001942597.1 CDS Clim_0526 NC_010803.1 594406 595020 R PFAM: SNARE associated Golgi protein; KEGG: cph:Cpha266_0812 DedA family protein; hypothetical protein complement(594406..595020) Chlorobium limicola DSM 245 6354877 YP_001942598.1 CDS Clim_0527 NC_010803.1 595163 595708 R PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex; pyruvoyl-dependent arginine decarboxylase complement(595163..595708) Chlorobium limicola DSM 245 6354878 YP_001942599.1 CDS Clim_0528 NC_010803.1 595794 597011 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(595794..597011) Chlorobium limicola DSM 245 6354879 YP_001942600.1 CDS smpB NC_010803.1 597027 597500 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(597027..597500) Chlorobium limicola DSM 245 6354880 YP_001942601.1 CDS Clim_0530 NC_010803.1 597508 598995 R PFAM: FAD linked oxidase domain protein; KEGG: cph:Cpha266_0816 FAD linked oxidase domain protein; D-lactate dehydrogenase complement(597508..598995) Chlorobium limicola DSM 245 6354881 YP_001942602.1 CDS Clim_0531 NC_010803.1 598992 600932 R KEGG: cph:Cpha266_0817 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 complement(598992..600932) Chlorobium limicola DSM 245 6354882 YP_001942603.1 CDS Clim_0532 NC_010803.1 600936 601427 R KEGG: cph:Cpha266_0818 hypothetical protein; hypothetical protein complement(600936..601427) Chlorobium limicola DSM 245 6354883 YP_001942604.1 CDS Clim_0533 NC_010803.1 601431 602291 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(601431..602291) Chlorobium limicola DSM 245 6354884 YP_001942605.1 CDS Clim_0534 NC_010803.1 602460 602849 D PFAM: chaperonin Cpn10; KEGG: cph:Cpha266_0820 chaperonin Cpn10; chaperonin Cpn10 602460..602849 Chlorobium limicola DSM 245 6354885 YP_001942606.1 CDS Clim_0535 NC_010803.1 602928 603884 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 602928..603884 Chlorobium limicola DSM 245 6354886 YP_001942607.1 CDS Clim_0536 NC_010803.1 604162 604887 D KEGG: cph:Cpha266_0822 hypothetical protein; hypothetical protein 604162..604887 Chlorobium limicola DSM 245 6354887 YP_001942608.1 CDS Clim_0537 NC_010803.1 604962 605978 D PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_0823 pentapeptide repeat protein; pentapeptide repeat-containing protein 604962..605978 Chlorobium limicola DSM 245 6354888 YP_001942609.1 CDS Clim_0538 NC_010803.1 606273 606452 R hypothetical protein complement(606273..606452) Chlorobium limicola DSM 245 6354889 YP_001942610.1 CDS Clim_0539 NC_010803.1 606817 610257 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 606817..610257 Chlorobium limicola DSM 245 6354890 YP_001942611.1 CDS Clim_0540 NC_010803.1 610317 611042 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_1781 cell division ATP-binding protein FtsE; ABC transporter complement(610317..611042) Chlorobium limicola DSM 245 6354891 YP_001942612.1 CDS Clim_0541 NC_010803.1 611039 612052 R KEGG: cph:Cpha266_1780 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase complement(611039..612052) Chlorobium limicola DSM 245 6354892 YP_001942613.1 CDS Clim_0542 NC_010803.1 612055 612519 R KEGG: cph:Cpha266_1779 hypothetical protein; hypothetical protein complement(612055..612519) Chlorobium limicola DSM 245 6354893 YP_001942614.1 CDS Clim_0543 NC_010803.1 612809 613555 D PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_2529 tetratricopeptide TPR_2 repeat protein; hypothetical protein 612809..613555 Chlorobium limicola DSM 245 6354894 YP_001942615.1 CDS Clim_0544 NC_010803.1 613647 614903 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1251 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(613647..614903) Chlorobium limicola DSM 245 6354895 YP_001942616.1 CDS Clim_0545 NC_010803.1 615145 615504 D KEGG: cph:Cpha266_1506 hypothetical protein; hypothetical protein 615145..615504 Chlorobium limicola DSM 245 6354896 YP_001942617.1 CDS Clim_0546 NC_010803.1 615464 616774 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: cch:Cag_1115 3-deoxy-D-manno-octulosonic-acid transferase; three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein complement(615464..616774) Chlorobium limicola DSM 245 6354897 YP_001942618.1 CDS Clim_0547 NC_010803.1 616974 619199 D PFAM: UvrD/REP helicase; KEGG: cph:Cpha266_0674 ATP-dependent DNA helicase PcrA; UvrD/REP helicase 616974..619199 Chlorobium limicola DSM 245 6354898 YP_001942619.1 CDS Clim_0548 NC_010803.1 619278 620309 D KEGG: cph:Cpha266_0675 hypothetical protein; hypothetical protein 619278..620309 Chlorobium limicola DSM 245 6354899 YP_001942620.1 CDS Clim_0549 NC_010803.1 620335 620913 D PFAM: nitroreductase; KEGG: cph:Cpha266_0676 nitroreductase; nitroreductase 620335..620913 Chlorobium limicola DSM 245 6354900 YP_001942621.1 CDS aat NC_010803.1 620934 621518 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 620934..621518 Chlorobium limicola DSM 245 6354901 YP_001942622.1 CDS Clim_0551 NC_010803.1 621591 622892 D KEGG: cph:Cpha266_0678 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA 621591..622892 Chlorobium limicola DSM 245 6354902 YP_001942623.1 CDS Clim_0552 NC_010803.1 623038 623925 D KEGG: cph:Cpha266_0679 enoyl-[acyl-carrier-protein] reductase [NADH]; enoyl-(acyl carrier protein) reductase 623038..623925 Chlorobium limicola DSM 245 6354903 YP_001942624.1 CDS Clim_0553 NC_010803.1 624283 626508 D KEGG: cph:Cpha266_0680 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase 624283..626508 Chlorobium limicola DSM 245 6354904 YP_001942625.1 CDS Clim_0554 NC_010803.1 626610 627242 R KEGG: cph:Cpha266_0681 hypothetical protein; hypothetical protein complement(626610..627242) Chlorobium limicola DSM 245 6354905 YP_001942626.1 CDS Clim_0555 NC_010803.1 627259 628167 R PFAM: pirin; KEGG: cph:Cpha266_0684 pirin domain protein domain protein; pirin complement(627259..628167) Chlorobium limicola DSM 245 6354906 YP_001942627.1 CDS Clim_0556 NC_010803.1 628345 629175 D PFAM: metallophosphoesterase; KEGG: cph:Cpha266_0685 metallophosphoesterase; metallophosphoesterase 628345..629175 Chlorobium limicola DSM 245 6354907 YP_001942628.1 CDS Clim_0557 NC_010803.1 629689 630687 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(629689..630687) Chlorobium limicola DSM 245 6354908 YP_001942629.1 CDS Clim_0558 NC_010803.1 630881 632596 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cph:Cpha266_0687 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 630881..632596 Chlorobium limicola DSM 245 6354909 YP_001942630.1 CDS Clim_0559 NC_010803.1 632970 634373 R catalyzes the zinc dependent deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis and catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP in fatty acid biosynthesis; bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase complement(632970..634373) Chlorobium limicola DSM 245 6354910 YP_001942631.1 CDS Clim_0560 NC_010803.1 634497 636329 R KEGG: cph:Cpha266_0542 ABC-type branched-chain amino acid transport systems periplasmic component-like; branched chain amino acid ABC transporter substrate-binding protein complement(634497..636329) Chlorobium limicola DSM 245 6354911 YP_001942632.1 CDS Clim_0561 NC_010803.1 636332 637138 R PFAM: inositol monophosphatase; KEGG: cph:Cpha266_0543 inositol-phosphate phosphatase; inositol-phosphate phosphatase complement(636332..637138) Chlorobium limicola DSM 245 6354912 YP_001942633.1 CDS Clim_0562 NC_010803.1 637336 637815 D PFAM: TspO/MBR family protein; KEGG: cph:Cpha266_0544 TspO and MBR like proteins; TspO and MBR-like protein 637336..637815 Chlorobium limicola DSM 245 6354913 YP_001942634.1 CDS Clim_0563 NC_010803.1 638170 638721 R KEGG: cph:Cpha266_0295 hypothetical protein; hypothetical protein complement(638170..638721) Chlorobium limicola DSM 245 6354914 YP_001942635.1 CDS Clim_0564 NC_010803.1 639179 639508 D KEGG: mbu:Mbur_0296 hypothetical protein; hypothetical protein 639179..639508 Chlorobium limicola DSM 245 6354915 YP_001942636.1 CDS Clim_0565 NC_010803.1 639676 640002 D KEGG: ppr:PBPRA1532 hypothetical protein; hypothetical protein 639676..640002 Chlorobium limicola DSM 245 6354831 YP_001942637.1 CDS Clim_0566 NC_010803.1 640078 640470 D KEGG: cbe:Cbei_2837 plasmid pRiA4b ORF-3 family protein; plasmid pRiA4b ORF-3 family protein 640078..640470 Chlorobium limicola DSM 245 6354014 YP_001942638.1 CDS Clim_0567 NC_010803.1 640612 640917 D KEGG: cch:Cag_0270 hypothetical protein; hypothetical protein 640612..640917 Chlorobium limicola DSM 245 6354015 YP_001942639.1 CDS Clim_0568 NC_010803.1 640927 641202 D KEGG: cch:Cag_0271 hypothetical protein; hypothetical protein 640927..641202 Chlorobium limicola DSM 245 6354016 YP_001942640.1 CDS Clim_0570 NC_010803.1 642035 642247 D hypothetical protein 642035..642247 Chlorobium limicola DSM 245 6354018 YP_001942641.1 CDS Clim_0571 NC_010803.1 642393 643592 D KEGG: sdn:Sden_3581 hypothetical protein; hypothetical protein 642393..643592 Chlorobium limicola DSM 245 6354019 YP_001942642.1 CDS Clim_0572 NC_010803.1 643634 644152 D PFAM: Domain of unknown function DUF1863; KEGG: neu:NE2099 hypothetical protein; hypothetical protein 643634..644152 Chlorobium limicola DSM 245 6354020 YP_001942643.1 CDS Clim_0573 NC_010803.1 644276 644950 D hypothetical protein 644276..644950 Chlorobium limicola DSM 245 6354021 YP_001942644.1 CDS Clim_0574 NC_010803.1 645022 646389 D PFAM: transposase IS4 family protein; KEGG: cph:Cpha266_2634 transposase, IS4 family protein; transposase IS4 family protein 645022..646389 Chlorobium limicola DSM 245 6354022 YP_001942645.1 CDS Clim_0575 NC_010803.1 646559 647569 D PFAM: Patatin; KEGG: mab:MAB_2091 hypothetical protein similar to patatin; patatin 646559..647569 Chlorobium limicola DSM 245 6354023 YP_001942646.1 CDS Clim_0577 NC_010803.1 647848 652740 D KEGG: noc:Noc_0920 superfamily I DNA and RNA helicases and helicase subunits-like; superfamily I DNA and RNA helicase subunits-like protein 647848..652740 Chlorobium limicola DSM 245 6354025 YP_001942647.1 CDS Clim_0578 NC_010803.1 652878 653246 D KEGG: cph:Cpha266_1695 hypothetical protein; hypothetical protein 652878..653246 Chlorobium limicola DSM 245 6354026 YP_001942648.1 CDS Clim_0579 NC_010803.1 653356 654330 D KEGG: amr:AM1_4420 esterase; esterase 653356..654330 Chlorobium limicola DSM 245 6354027 YP_001942649.1 CDS Clim_0580 NC_010803.1 654421 654657 D hypothetical protein 654421..654657 Chlorobium limicola DSM 245 6354028 YP_001942650.1 CDS Clim_0581 NC_010803.1 654758 655039 D KEGG: gur:Gura_0605 hypothetical protein; hypothetical protein 654758..655039 Chlorobium limicola DSM 245 6354029 YP_001942651.1 CDS Clim_0582 NC_010803.1 655086 655562 D KEGG: sus:Acid_3466 hypothetical protein; hypothetical protein 655086..655562 Chlorobium limicola DSM 245 6354030 YP_001942652.1 CDS Clim_0583 NC_010803.1 655967 656173 D KEGG: cph:Cpha266_2113 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 655967..656173 Chlorobium limicola DSM 245 6354031 YP_001942653.1 CDS Clim_0585 NC_010803.1 657075 658673 R PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 TPR repeat; hypothetical protein complement(657075..658673) Chlorobium limicola DSM 245 6354033 YP_001942654.1 CDS Clim_0586 NC_010803.1 659149 659616 D SMART: HNH nuclease; KEGG: aau:AAur_1020 HNH endonuclease domain protein; HNH nuclease 659149..659616 Chlorobium limicola DSM 245 6354034 YP_001942655.1 CDS Clim_0587 NC_010803.1 659691 660164 D KEGG: sus:Acid_3466 hypothetical protein; hypothetical protein 659691..660164 Chlorobium limicola DSM 245 6354035 YP_001942656.1 CDS Clim_0589 NC_010803.1 660454 660642 D KEGG: plt:Plut_0648 hypothetical protein; hypothetical protein 660454..660642 Chlorobium limicola DSM 245 6354037 YP_001942657.1 CDS Clim_0590 NC_010803.1 660620 660913 D PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_0647 XRE family transcriptional regulator; XRE family transcriptional regulator 660620..660913 Chlorobium limicola DSM 245 6354038 YP_001942658.1 CDS Clim_0591 NC_010803.1 661359 661589 D TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: swo:Swol_1551 hypothetical protein; addiction module protein 661359..661589 Chlorobium limicola DSM 245 6354039 YP_001942659.1 CDS Clim_0593 NC_010803.1 662105 663409 R KEGG: cph:Cpha266_0774 hypothetical protein; hypothetical protein complement(662105..663409) Chlorobium limicola DSM 245 6354041 YP_001942660.1 CDS Clim_0594 NC_010803.1 663721 664206 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: gur:Gura_0848 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 663721..664206 Chlorobium limicola DSM 245 6354042 YP_001942661.1 CDS Clim_0595 NC_010803.1 664460 664873 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: net:Neut_1850 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 664460..664873 Chlorobium limicola DSM 245 6354043 YP_001942662.1 CDS Clim_0596 NC_010803.1 665026 665328 D KEGG: cph:Cpha266_0282 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S 665026..665328 Chlorobium limicola DSM 245 6354044 YP_001942663.1 CDS Clim_0597 NC_010803.1 665478 667451 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(665478..667451) Chlorobium limicola DSM 245 6354045 YP_001942664.1 CDS leuS NC_010803.1 667647 670064 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(667647..670064) Chlorobium limicola DSM 245 6354046 YP_001942665.1 CDS Clim_0599 NC_010803.1 670217 672427 R KEGG: cph:Cpha266_0552 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(670217..672427) Chlorobium limicola DSM 245 6354047 YP_001942666.1 CDS panC NC_010803.1 672567 673418 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(672567..673418) Chlorobium limicola DSM 245 6354048 YP_001942667.1 CDS Clim_0601 NC_010803.1 673402 674154 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: plt:Plut_1633 hypothetical protein; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase complement(673402..674154) Chlorobium limicola DSM 245 6354049 YP_001942668.1 CDS Clim_0602 NC_010803.1 674253 675236 D KEGG: cph:Cpha266_0555 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 674253..675236 Chlorobium limicola DSM 245 6354050 YP_001942669.1 CDS Clim_0603 NC_010803.1 675302 677095 D KEGG: cph:Cpha266_0556 Signal peptide peptidase A. Serine peptidase. MEROPS family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 36K type 675302..677095 Chlorobium limicola DSM 245 6354051 YP_001942670.1 CDS Clim_0604 NC_010803.1 677159 678565 R KEGG: cph:Cpha266_0557 hypothetical protein; hypothetical protein complement(677159..678565) Chlorobium limicola DSM 245 6354052 YP_001942671.1 CDS Clim_0605 NC_010803.1 678769 680325 R KEGG: cph:Cpha266_0558 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI complement(678769..680325) Chlorobium limicola DSM 245 6354053 YP_001942672.1 CDS Clim_0606 NC_010803.1 680606 683374 R PFAM: phosphoenolpyruvate carboxylase; KEGG: cph:Cpha266_0559 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase complement(680606..683374) Chlorobium limicola DSM 245 6354054 YP_001942673.1 CDS Clim_0607 NC_010803.1 683634 684335 D KEGG: cph:Cpha266_0560 photosystem P840 reaction center cytochrome c-551; photosystem P840 reaction center cytochrome c-551 683634..684335 Chlorobium limicola DSM 245 6354055 YP_001942674.1 CDS Clim_0608 NC_010803.1 684417 684845 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(684417..684845) Chlorobium limicola DSM 245 6354056 YP_001942675.1 CDS Clim_0609 NC_010803.1 684914 685621 D PFAM: methyltransferase small; Methyltransferase type 12; KEGG: cph:Cpha266_0562 methyltransferase type 12; type 12 methyltransferase 684914..685621 Chlorobium limicola DSM 245 6354057 YP_001942676.1 CDS Clim_0610 NC_010803.1 685623 686471 D KEGG: cph:Cpha266_0563 hypothetical protein; hypothetical protein 685623..686471 Chlorobium limicola DSM 245 6354058 YP_001942677.1 CDS Clim_0611 NC_010803.1 686468 687481 D PFAM: integrase family protein; integrase; KEGG: cph:Cpha266_0564 tyrosine recombinase XerC subunit; integrase family protein 686468..687481 Chlorobium limicola DSM 245 6354059 YP_001942678.1 CDS Clim_0612 NC_010803.1 687557 687880 D TIGRFAM: ribosomal subunit interface protein; KEGG: cph:Cpha266_0565 hypothetical protein; sigma 54 modulation protein/ribosomal protein S30EA 687557..687880 Chlorobium limicola DSM 245 6354060 YP_001942679.1 CDS Clim_0613 NC_010803.1 687953 688945 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 687953..688945 Chlorobium limicola DSM 245 6354061 YP_001942680.1 CDS Clim_0614 NC_010803.1 688932 690713 D PFAM: extracellular solute-binding protein family 5; KEGG: cph:Cpha266_0567 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 688932..690713 Chlorobium limicola DSM 245 6354062 YP_001942681.1 CDS Clim_0615 NC_010803.1 690720 691685 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: plt:Plut_1620 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 690720..691685 Chlorobium limicola DSM 245 6354063 YP_001942682.1 CDS ruvB NC_010803.1 691722 692768 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 691722..692768 Chlorobium limicola DSM 245 6354064 YP_001942683.1 CDS Clim_0617 NC_010803.1 692752 694491 D PFAM: hypothetical protein; Tetratricopeptide TPR_3; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0570 tetratricopeptide TPR_2 repeat protein; hypothetical protein 692752..694491 Chlorobium limicola DSM 245 6354065 YP_001942684.1 CDS Clim_0618 NC_010803.1 694555 698115 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cph:Cpha266_0571 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein complement(694555..698115) Chlorobium limicola DSM 245 6354066 YP_001942685.1 CDS Clim_0619 NC_010803.1 698406 699152 D TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cph:Cpha266_0572 RNA methyltransferase, TrmH family, group 3; TrmH family RNA methyltransferase 698406..699152 Chlorobium limicola DSM 245 6354067 YP_001942686.1 CDS Clim_0620 NC_010803.1 699276 699659 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 699276..699659 Chlorobium limicola DSM 245 6354068 YP_001942687.1 CDS Clim_0621 NC_010803.1 699693 701024 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 699693..701024 Chlorobium limicola DSM 245 6354069 YP_001942688.1 CDS Clim_0622 NC_010803.1 701120 702010 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(701120..702010) Chlorobium limicola DSM 245 6354070 YP_001942689.1 CDS Clim_0623 NC_010803.1 702236 703942 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: cph:Cpha266_0576 DNA repair protein RecN; DNA repair protein RecN complement(702236..703942) Chlorobium limicola DSM 245 6354071 YP_001942690.1 CDS Clim_0624 NC_010803.1 704054 704266 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: cph:Cpha266_0577 twin-arginine translocation protein, TatA/E family subunit; twin-arginine translocation protein, TatA/E family subunit complement(704054..704266) Chlorobium limicola DSM 245 6354072 YP_001942691.1 CDS Clim_0625 NC_010803.1 704377 705015 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(704377..705015) Chlorobium limicola DSM 245 6354073 YP_001942692.1 CDS Clim_0626 NC_010803.1 705113 706090 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: cph:Cpha266_0579 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase 705113..706090 Chlorobium limicola DSM 245 6354074 YP_001942693.1 CDS Clim_0627 NC_010803.1 706099 707133 R KEGG: cph:Cpha266_0580 hypothetical protein; hypothetical protein complement(706099..707133) Chlorobium limicola DSM 245 6354075 YP_001942694.1 CDS rnhA NC_010803.1 707145 707585 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(707145..707585) Chlorobium limicola DSM 245 6354076 YP_001942695.1 CDS rpmB NC_010803.1 707657 707875 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(707657..707875) Chlorobium limicola DSM 245 6354077 YP_001942696.1 CDS Clim_0630 NC_010803.1 707970 708962 R TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cph:Cpha266_0583 bacteriochlorophyll/chlorophyll a synthase; bacteriochlorophyll/chlorophyll a synthase complement(707970..708962) Chlorobium limicola DSM 245 6354078 YP_001942697.1 CDS trpD NC_010803.1 709041 710096 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(709041..710096) Chlorobium limicola DSM 245 6354079 YP_001942698.1 CDS Clim_0632 NC_010803.1 710216 711310 D PFAM: creatinase; peptidase M24; KEGG: cph:Cpha266_0585 peptidase M24; peptidase M24 710216..711310 Chlorobium limicola DSM 245 6354080 YP_001942699.1 CDS Clim_0633 NC_010803.1 711366 711698 D PFAM: CutA1 divalent ion tolerance protein; KEGG: cph:Cpha266_0586 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 711366..711698 Chlorobium limicola DSM 245 6354081 YP_001942700.1 CDS Clim_0634 NC_010803.1 711757 712653 R KEGG: cph:Cpha266_0688 hypothetical protein; hypothetical protein complement(711757..712653) Chlorobium limicola DSM 245 6354082 YP_001942701.1 CDS Clim_0635 NC_010803.1 712640 713572 R PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_0689 glycosyl transferase, family 2; family 2 glycosyl transferase complement(712640..713572) Chlorobium limicola DSM 245 6354083 YP_001942702.1 CDS Clim_0636 NC_010803.1 713569 715131 R PFAM: glycosyl transferase family 39; KEGG: cph:Cpha266_0690 glycosyl transferase, family 39; glycosyl transferase family protein complement(713569..715131) Chlorobium limicola DSM 245 6354084 YP_001942703.1 CDS Clim_0637 NC_010803.1 715103 715729 R PFAM: phosphoesterase PA-phosphatase related; KEGG: cph:Cpha266_0691 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(715103..715729) Chlorobium limicola DSM 245 6354085 YP_001942704.1 CDS purU NC_010803.1 715894 716757 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 715894..716757 Chlorobium limicola DSM 245 6354086 YP_001942705.1 CDS Clim_0639 NC_010803.1 716933 717451 D PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: pvi:Cvib_0516 lipocalin family protein; lipocalin family protein 716933..717451 Chlorobium limicola DSM 245 6354087 YP_001942706.1 CDS Clim_0640 NC_010803.1 717498 717659 D hypothetical protein 717498..717659 Chlorobium limicola DSM 245 6354088 YP_001942707.1 CDS Clim_0641 NC_010803.1 717784 719037 D PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: aci:ACIAD0355 hypothetical protein; hypothetical protein 717784..719037 Chlorobium limicola DSM 245 6354089 YP_001942708.1 CDS Clim_0642 NC_010803.1 719141 719713 D PFAM: flavin reductase domain protein FMN-binding; KEGG: gme:Gmet_1443 flavin reductase-like, FMN-binding; flavin reductase domain-containing protein 719141..719713 Chlorobium limicola DSM 245 6354090 YP_001942709.1 CDS Clim_0643 NC_010803.1 720193 720375 D KEGG: gur:Gura_2094 hypothetical protein; hypothetical protein 720193..720375 Chlorobium limicola DSM 245 6354091 YP_001942710.1 CDS Clim_0644 NC_010803.1 720477 720617 D KEGG: gme:Gmet_1443 flavin reductase-like, FMN-binding; flavin reductase-like, FMN-binding 720477..720617 Chlorobium limicola DSM 245 6354092 YP_001942711.1 CDS Clim_0645 NC_010803.1 721160 721924 D KEGG: cph:Cpha266_2523 type II site-specific deoxyribonuclease; type II site-specific deoxyribonuclease 721160..721924 Chlorobium limicola DSM 245 6354093 YP_001942712.1 CDS Clim_0646 NC_010803.1 721905 723011 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cph:Cpha266_2524 DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein complement(721905..723011) Chlorobium limicola DSM 245 6354094 YP_001942713.1 CDS Clim_0648 NC_010803.1 723526 723996 D KEGG: ade:Adeh_3278 hypothetical protein; hypothetical protein 723526..723996 Chlorobium limicola DSM 245 6354262 YP_001942714.1 CDS Clim_0649 NC_010803.1 724134 724712 D hypothetical protein 724134..724712 Chlorobium limicola DSM 245 6354263 YP_001942715.1 CDS Clim_0651 NC_010803.1 725657 726034 D KEGG: ppr:PBPRB1764 hypothetical protein; hypothetical protein 725657..726034 Chlorobium limicola DSM 245 6354265 YP_001942716.1 CDS Clim_0652 NC_010803.1 726207 727217 D KEGG: aav:Aave_0556 hypothetical protein; hypothetical protein 726207..727217 Chlorobium limicola DSM 245 6354266 YP_001942717.1 CDS Clim_0653 NC_010803.1 727498 728355 D KEGG: hch:HCH_04427 hypothetical protein; hypothetical protein 727498..728355 Chlorobium limicola DSM 245 6354267 YP_001942718.1 CDS Clim_0654 NC_010803.1 728490 729395 D KEGG: psp:PSPPH_4543 hypothetical protein; hypothetical protein 728490..729395 Chlorobium limicola DSM 245 6354268 YP_001942719.1 CDS Clim_0655 NC_010803.1 729950 730234 R KEGG: cch:Cag_1578 hypothetical protein; hypothetical protein complement(729950..730234) Chlorobium limicola DSM 245 6354269 YP_001942720.1 CDS Clim_0656 NC_010803.1 730234 730569 R PFAM: protein of unknown function DUF891; KEGG: plt:Plut_0606 hypothetical protein; hypothetical protein complement(730234..730569) Chlorobium limicola DSM 245 6354270 YP_001942721.1 CDS Clim_0658 NC_010803.1 731102 731557 R PFAM: twitching mobility protein PilT; KEGG: swo:Swol_1837 PilT protein-like protein; twitching mobility protein PilT complement(731102..731557) Chlorobium limicola DSM 245 6354272 YP_001942722.1 CDS Clim_0659 NC_010803.1 731545 731715 R hypothetical protein complement(731545..731715) Chlorobium limicola DSM 245 6354273 YP_001942723.1 CDS Clim_0660 NC_010803.1 731853 732188 D PFAM: protein of unknown function DUF486; KEGG: gsu:GSU1275 hypothetical protein; hypothetical protein 731853..732188 Chlorobium limicola DSM 245 6354274 YP_001942724.1 CDS Clim_0661 NC_010803.1 732222 733943 R KEGG: cph:Cpha266_0697 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein CydC complement(732222..733943) Chlorobium limicola DSM 245 6354275 YP_001942725.1 CDS Clim_0663 NC_010803.1 736371 737132 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: cch:Cag_1270 thiamine biosynthesis protein ThiF; UBA/THIF-type NAD/FAD binding protein complement(736371..737132) Chlorobium limicola DSM 245 6354277 YP_001942726.1 CDS thiH NC_010803.1 737153 738220 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(737153..738220) Chlorobium limicola DSM 245 6354278 YP_001942727.1 CDS thiG NC_010803.1 738217 738996 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(738217..738996) Chlorobium limicola DSM 245 6354279 YP_001942728.1 CDS Clim_0666 NC_010803.1 739015 739227 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: cph:Cpha266_0731 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS complement(739015..739227) Chlorobium limicola DSM 245 6354280 YP_001942729.1 CDS Clim_0667 NC_010803.1 739367 740512 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cph:Cpha266_0732 cystathionine gamma-synthase; cystathionine gamma-synthase complement(739367..740512) Chlorobium limicola DSM 245 6354281 YP_001942730.1 CDS Clim_0668 NC_010803.1 740570 741859 R KEGG: plt:Plut_1549 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(740570..741859) Chlorobium limicola DSM 245 6354282 YP_001942731.1 CDS Clim_0669 NC_010803.1 741939 742385 R KEGG: plt:Plut_1546 hypothetical protein; hypothetical protein complement(741939..742385) Chlorobium limicola DSM 245 6354283 YP_001942732.1 CDS Clim_0670 NC_010803.1 742469 742621 D hypothetical protein 742469..742621 Chlorobium limicola DSM 245 6354284 YP_001942733.1 CDS Clim_0671 NC_010803.1 742775 743209 D PFAM: MOSC domain containing protein; KEGG: cph:Cpha266_0733 MOSC domain containing protein; MOSC domain-containing protein 742775..743209 Chlorobium limicola DSM 245 6354285 YP_001942734.1 CDS Clim_0672 NC_010803.1 743215 744213 R KEGG: cph:Cpha266_0734 GTP cyclohydrolase subunit MoaA; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A complement(743215..744213) Chlorobium limicola DSM 245 6354286 YP_001942735.1 CDS Clim_0673 NC_010803.1 744305 745117 R TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: cph:Cpha266_0735 ModE family transcriptional regulator; ModE family transcriptional regulator complement(744305..745117) Chlorobium limicola DSM 245 6354287 YP_001942736.1 CDS Clim_0674 NC_010803.1 745172 745879 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: plt:Plut_1542 transmembrane protein; binding-protein-dependent transport system inner membrane protein complement(745172..745879) Chlorobium limicola DSM 245 6354288 YP_001942737.1 CDS Clim_0675 NC_010803.1 745876 746604 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: cph:Cpha266_0441 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(745876..746604) Chlorobium limicola DSM 245 6354289 YP_001942738.1 CDS Clim_0676 NC_010803.1 746701 748971 R PFAM: TonB-dependent receptor; KEGG: cph:Cpha266_0440 TonB-dependent receptor; TonB-dependent receptor complement(746701..748971) Chlorobium limicola DSM 245 6354290 YP_001942739.1 CDS Clim_0677 NC_010803.1 749110 749418 R KEGG: cte:CT1541 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S complement(749110..749418) Chlorobium limicola DSM 245 6354291 YP_001942740.1 CDS Clim_0678 NC_010803.1 749499 750773 R KEGG: cph:Cpha266_0737 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; nitrogenase cofactor biosynthesis protein NifB complement(749499..750773) Chlorobium limicola DSM 245 6354292 YP_001942741.1 CDS Clim_0679 NC_010803.1 750787 752142 R PFAM: oxidoreductase/nitrogenase component 1; KEGG: cph:Cpha266_0738 nitrogenase; nitrogenase complement(750787..752142) Chlorobium limicola DSM 245 6354293 YP_001942742.1 CDS Clim_0680 NC_010803.1 752139 753506 R KEGG: plt:Plut_1533 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase MoFe cofactor biosynthesis protein NifE complement(752139..753506) Chlorobium limicola DSM 245 6354294 YP_001942743.1 CDS Clim_0681 NC_010803.1 753611 754990 R KEGG: cph:Cpha266_0740 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit beta complement(753611..754990) Chlorobium limicola DSM 245 6354295 YP_001942744.1 CDS Clim_0682 NC_010803.1 755017 756657 R KEGG: cph:Cpha266_0741 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit alpha complement(755017..756657) Chlorobium limicola DSM 245 6354296 YP_001942745.1 CDS Clim_0683 NC_010803.1 756695 757072 R PFAM: nitrogen regulatory protein P-II; KEGG: cte:CT1535 nitrogen regulatory protein, P-II family; nitrogen regulatory protein P-II complement(756695..757072) Chlorobium limicola DSM 245 6354297 YP_001942746.1 CDS Clim_0684 NC_010803.1 757072 757425 R PFAM: nitrogen regulatory protein P-II; KEGG: cte:CT1534 nitrogen regulatory protein, P-II family; nitrogen regulatory protein P-II complement(757072..757425) Chlorobium limicola DSM 245 6354298 YP_001942747.1 CDS nifH NC_010803.1 757444 758268 R nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; nitrogenase reductase complement(757444..758268) Chlorobium limicola DSM 245 6354299 YP_001942748.1 CDS Clim_0686 NC_010803.1 758632 759240 D hypothetical protein 758632..759240 Chlorobium limicola DSM 245 6354300 YP_001942749.1 CDS Clim_0687 NC_010803.1 759287 760246 D PFAM: aldo/keto reductase; KEGG: cch:Cag_1232 aldo/keto reductase; aldo/keto reductase 759287..760246 Chlorobium limicola DSM 245 6354301 YP_001942750.1 CDS Clim_0688 NC_010803.1 760285 762360 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator; histidine kinase complement(760285..762360) Chlorobium limicola DSM 245 6354302 YP_001942751.1 CDS Clim_0689 NC_010803.1 762561 764195 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cph:Cpha266_1919 DNA-binding protein fis / Fis family transcriptional regulator; hypothetical protein complement(762561..764195) Chlorobium limicola DSM 245 6354303 YP_001942752.1 CDS Clim_0690 NC_010803.1 764201 765370 R TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: cph:Cpha266_1918 homocitrate synthase; homocitrate synthase complement(764201..765370) Chlorobium limicola DSM 245 6354304 YP_001942753.1 CDS Clim_0691 NC_010803.1 765890 766366 D PFAM: Rhodanese domain protein; KEGG: cph:Cpha266_0124 rhodanese domain protein; rhodanese domain-containing protein 765890..766366 Chlorobium limicola DSM 245 6354305 YP_001942754.1 CDS Clim_0692 NC_010803.1 766495 767892 D TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: cph:Cpha266_0126 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 766495..767892 Chlorobium limicola DSM 245 6354306 YP_001942755.1 CDS Clim_0693 NC_010803.1 768269 768604 D TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: plt:Plut_0035 sulfite reductase, dissimilatory-type, gamma subunit; TusE/DsrC/DsvC family sulfur relay protein 768269..768604 Chlorobium limicola DSM 245 6354307 YP_001942756.1 CDS Clim_0694 NC_010803.1 768660 769913 D KEGG: cph:Cpha266_0128 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type subunit alpha 768660..769913 Chlorobium limicola DSM 245 6354308 YP_001942757.1 CDS Clim_0695 NC_010803.1 769997 771076 D KEGG: cph:Cpha266_0129 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type subunit beta 769997..771076 Chlorobium limicola DSM 245 6354309 YP_001942758.1 CDS Clim_0696 NC_010803.1 771095 772828 D unknown function; glutamate synthase (NADPH) small subunit 771095..772828 Chlorobium limicola DSM 245 6354310 YP_001942759.1 CDS Clim_0697 NC_010803.1 772818 773216 D KEGG: cfa:610889 similar to collagen, type XXV, alpha 1 isoform 1; collagen, type XXV, alpha 1 isoform 1-like protein 772818..773216 Chlorobium limicola DSM 245 6354311 YP_001942760.1 CDS Clim_0698 NC_010803.1 773300 773671 D KEGG: cph:Cpha266_0131 hypothetical protein; hypothetical protein 773300..773671 Chlorobium limicola DSM 245 6354312 YP_001942761.1 CDS Clim_0699 NC_010803.1 773722 774081 D TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: cch:Cag_1952 DsrE protein; sulfur relay protein TusD/DsrE 773722..774081 Chlorobium limicola DSM 245 6354313 YP_001942762.1 CDS Clim_0700 NC_010803.1 774089 774460 D TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: cch:Cag_1951 DsrF protein; sulfur relay protein TusC/DsrF 774089..774460 Chlorobium limicola DSM 245 6354314 YP_001942763.1 CDS Clim_0701 NC_010803.1 774477 774770 D TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: cte:CT0857 DsrH protein; sulfur relay protein TusB/DsrH 774477..774770 Chlorobium limicola DSM 245 6354315 YP_001942764.1 CDS Clim_0702 NC_010803.1 774812 775258 D KEGG: cph:Cpha266_0135 hypothetical protein; hypothetical protein 774812..775258 Chlorobium limicola DSM 245 6354316 YP_001942765.1 CDS Clim_0703 NC_010803.1 775255 776250 D PFAM: Nitrate reductase gamma subunit; KEGG: cph:Cpha266_0136 nitrate reductase, gamma subunit; nitrate reductase subunit gamma 775255..776250 Chlorobium limicola DSM 245 6354317 YP_001942766.1 CDS Clim_0704 NC_010803.1 776253 777902 D KEGG: cph:Cpha266_0137 DsrK protein; DsrK protein 776253..777902 Chlorobium limicola DSM 245 6354318 YP_001942767.1 CDS Clim_0705 NC_010803.1 777910 778275 D KEGG: cph:Cpha266_0138 hypothetical protein; hypothetical protein 777910..778275 Chlorobium limicola DSM 245 6354319 YP_001942768.1 CDS Clim_0706 NC_010803.1 778275 779051 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0139 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 778275..779051 Chlorobium limicola DSM 245 6354320 YP_001942769.1 CDS Clim_0707 NC_010803.1 779061 780218 D PFAM: Polysulphide reductase NrfD; KEGG: cph:Cpha266_0140 polysulphide reductase, NrfD; polysulfide reductase NrfD 779061..780218 Chlorobium limicola DSM 245 6354321 YP_001942770.1 CDS Clim_0708 NC_010803.1 780355 780816 D TIGRFAM: siroheme synthase; KEGG: cte:CT2239 porphyrin biosynthesis protein; siroheme synthase 780355..780816 Chlorobium limicola DSM 245 6354322 YP_001942771.1 CDS Clim_0709 NC_010803.1 780837 782213 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cph:Cpha266_0142 uroporphyrinogen-III C-methyltransferase; uroporphyrin-III C-methyltransferase 780837..782213 Chlorobium limicola DSM 245 6354323 YP_001942772.1 CDS Clim_0710 NC_010803.1 782266 785064 R KEGG: cch:Cag_1875 TPR repeat; TIGRFAM: pentatricopeptide repeat containing protein; PFAM: hypothetical protein; transcriptional regulator TrmB; SMART: AAA ATPase; Tetratricopeptide domain protein; pentatricopeptide repeat-containing protein complement(782266..785064) Chlorobium limicola DSM 245 6354324 YP_001942773.1 CDS Clim_0711 NC_010803.1 785068 786306 R KEGG: gvi:gll1120 unknown protein; hypothetical protein complement(785068..786306) Chlorobium limicola DSM 245 6354325 YP_001942774.1 CDS Clim_0712 NC_010803.1 786595 786771 D hypothetical protein 786595..786771 Chlorobium limicola DSM 245 6354326 YP_001942775.1 CDS Clim_0713 NC_010803.1 786735 787259 R hypothetical protein complement(786735..787259) Chlorobium limicola DSM 245 6354327 YP_001942776.1 CDS Clim_0714 NC_010803.1 788015 788455 R hypothetical protein complement(788015..788455) Chlorobium limicola DSM 245 6354328 YP_001942777.1 CDS Clim_0715 NC_010803.1 788868 789011 D hypothetical protein 788868..789011 Chlorobium limicola DSM 245 6354329 YP_001942778.1 CDS Clim_0716 NC_010803.1 789106 790680 D PFAM: Integrase catalytic region; KEGG: cph:Cpha266_2658 integrase, catalytic region; integrase catalytic subunit 789106..790680 Chlorobium limicola DSM 245 6354330 YP_001942779.1 CDS Clim_0717 NC_010803.1 790683 791495 D PFAM: IstB domain protein ATP-binding protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cph:Cpha266_2659 IstB domain protein ATP-binding protein; IstB domain-containing protein ATP-binding protein 790683..791495 Chlorobium limicola DSM 245 6355998 YP_001942780.1 CDS Clim_0719 NC_010803.1 791832 792077 D KEGG: cph:Cpha266_1578 protein of unknown function DUF1568; hypothetical protein 791832..792077 Chlorobium limicola DSM 245 6356000 YP_001942781.1 CDS Clim_0720 NC_010803.1 792193 792429 D KEGG: tbd:Tbd_0449 hypothetical protein; hypothetical protein 792193..792429 Chlorobium limicola DSM 245 6356001 YP_001942782.1 CDS Clim_0721 NC_010803.1 792433 792642 D KEGG: cph:Cpha266_2116 hypothetical protein; hypothetical protein 792433..792642 Chlorobium limicola DSM 245 6356002 YP_001942783.1 CDS Clim_0722 NC_010803.1 792773 793738 D PFAM: protein of unknown function DUF1568; KEGG: cph:Cpha266_1427 protein of unknown function DUF1568; hypothetical protein 792773..793738 Chlorobium limicola DSM 245 6356003 YP_001942784.1 CDS Clim_0724 NC_010803.1 794889 795320 D PFAM: thiol-disulphide oxidoreductase DCC; KEGG: cph:Cpha266_2114 thiol-disulphide oxidoreductase DCC; thiol-disulfide oxidoreductase DCC 794889..795320 Chlorobium limicola DSM 245 6356005 YP_001942785.1 CDS Clim_0725 NC_010803.1 795701 796642 D PFAM: RNA methylase; Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_2109 methyltransferase type 11; type 11 methyltransferase 795701..796642 Chlorobium limicola DSM 245 6356006 YP_001942786.1 CDS Clim_0726 NC_010803.1 796753 797034 R TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: plasmid stabilization system; Addiction module toxin Txe/YoeB; KEGG: plt:Plut_1930 addiction module toxin, Txe/YoeB; Txe/YoeB family addiction module toxin complement(796753..797034) Chlorobium limicola DSM 245 6356007 YP_001942787.1 CDS Clim_0727 NC_010803.1 797016 797273 R KEGG: cch:Cag_0601 hypothetical protein; hypothetical protein complement(797016..797273) Chlorobium limicola DSM 245 6356008 YP_001942788.1 CDS Clim_0728 NC_010803.1 798003 798659 R KEGG: plt:Plut_0829 Legionella vir region protein; vir region protein-like protein complement(798003..798659) Chlorobium limicola DSM 245 6356009 YP_001942789.1 CDS Clim_0729 NC_010803.1 798931 799140 D hypothetical protein 798931..799140 Chlorobium limicola DSM 245 6356010 YP_001942790.1 CDS Clim_0730 NC_010803.1 799167 799406 R PFAM: transglycosylase; KEGG: cph:Cpha266_1988 transglycosylase-associated protein; transglycosylase complement(799167..799406) Chlorobium limicola DSM 245 6356011 YP_001942791.1 CDS Clim_0731 NC_010803.1 799699 800556 R PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: cph:Cpha266_1744 transglutaminase, N-terminal domain protein; transglutaminase domain-containing protein complement(799699..800556) Chlorobium limicola DSM 245 6356012 YP_001942792.1 CDS Clim_0732 NC_010803.1 800613 801680 R PFAM: protein of unknown function DUF403; KEGG: cph:Cpha266_1743 protein of unknown function DUF403; hypothetical protein complement(800613..801680) Chlorobium limicola DSM 245 6356013 YP_001942793.1 CDS Clim_0733 NC_010803.1 801700 803148 R PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: cph:Cpha266_1742 protein of unknown function DUF404; hypothetical protein complement(801700..803148) Chlorobium limicola DSM 245 6356014 YP_001942794.1 CDS Clim_0734 NC_010803.1 803508 804851 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1073 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 803508..804851 Chlorobium limicola DSM 245 6356015 YP_001942795.1 CDS Clim_0735 NC_010803.1 804877 806478 R TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cph:Cpha266_0846 alpha-isopropylmalate/homocitrate synthase family transferase; alpha-isopropylmalate/homocitrate synthase family transferase complement(804877..806478) Chlorobium limicola DSM 245 6356016 YP_001942796.1 CDS Clim_0736 NC_010803.1 806492 807058 R TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: cph:Cpha266_0847 3-isopropylmalate dehydratase, small subunit; 3-isopropylmalate dehydratase small subunit complement(806492..807058) Chlorobium limicola DSM 245 6356017 YP_001942797.1 CDS Clim_0737 NC_010803.1 807097 808392 R KEGG: cph:Cpha266_0848 homoaconitate hydratase family protein; TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein; homoaconitate hydratase family protein complement(807097..808392) Chlorobium limicola DSM 245 6356018 YP_001942798.1 CDS Clim_0738 NC_010803.1 808440 809516 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(808440..809516) Chlorobium limicola DSM 245 6356019 YP_001942799.1 CDS Clim_0739 NC_010803.1 809516 810508 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(809516..810508) Chlorobium limicola DSM 245 6356020 YP_001942800.1 CDS ilvH NC_010803.1 810551 811030 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(810551..811030) Chlorobium limicola DSM 245 6356021 YP_001942801.1 CDS Clim_0741 NC_010803.1 811041 812762 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cph:Cpha266_0853 acetolactate synthase, large subunit; acetolactate synthase large subunit complement(811041..812762) Chlorobium limicola DSM 245 6356022 YP_001942802.1 CDS Clim_0742 NC_010803.1 812770 814467 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(812770..814467) Chlorobium limicola DSM 245 6356023 YP_001942803.1 CDS Clim_0743 NC_010803.1 814982 816559 D PFAM: phosphatidate cytidylyltransferase; protein of unknown function DUF92 transmembrane; KEGG: cph:Cpha266_0855 protein of unknown function DUF92, transmembrane; hypothetical protein 814982..816559 Chlorobium limicola DSM 245 6356024 YP_001942804.1 CDS Clim_0744 NC_010803.1 816583 817260 D TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: cph:Cpha266_0856 MotA/TolQ/ExbB proton channel; protein TolQ 816583..817260 Chlorobium limicola DSM 245 6356025 YP_001942805.1 CDS Clim_0745 NC_010803.1 817257 817679 D TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: plt:Plut_0612 ExbD/TolR family protein; protein TolR 817257..817679 Chlorobium limicola DSM 245 6356026 YP_001942806.1 CDS Clim_0746 NC_010803.1 817689 818639 D TIGRFAM: TonB family protein; KEGG: cph:Cpha266_0858 Fis family transcriptional regulator; TonB family protein 817689..818639 Chlorobium limicola DSM 245 6356027 YP_001942807.1 CDS Clim_0747 NC_010803.1 818838 820172 D TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain protein; WD40 domain protein beta Propeller; KEGG: cph:Cpha266_0859 WD40 domain protein beta propeller; Tol-Pal system beta propeller repeat-containing protein TolB 818838..820172 Chlorobium limicola DSM 245 6356028 YP_001942808.1 CDS Clim_0748 NC_010803.1 820208 820669 D TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_0860 OmpA/MotB domain protein; peptidoglycan-associated lipoprotein 820208..820669 Chlorobium limicola DSM 245 6356029 YP_001942809.1 CDS Clim_0749 NC_010803.1 820755 821264 D TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: plt:Plut_0616 peptidoglycan-associated lipoprotein; peptidoglycan-associated lipoprotein 820755..821264 Chlorobium limicola DSM 245 6356030 YP_001942810.1 CDS Clim_0750 NC_010803.1 821319 822086 D TIGRFAM: tol-pal system protein YbgF; KEGG: cph:Cpha266_0862 membrane lipoprotein lipid attachment site; tol-pal system protein YbgF 821319..822086 Chlorobium limicola DSM 245 6356031 YP_001942811.1 CDS Clim_0751 NC_010803.1 822210 823235 D KEGG: cph:Cpha266_0316 hypothetical protein; hypothetical protein 822210..823235 Chlorobium limicola DSM 245 6356032 YP_001942812.1 CDS Clim_0752 NC_010803.1 823257 823559 D PFAM: FeoA family protein; KEGG: pvi:Cvib_0519 FeoA family protein; FeoA family protein 823257..823559 Chlorobium limicola DSM 245 6356033 YP_001942813.1 CDS Clim_0753 NC_010803.1 823556 823783 D PFAM: FeoA family protein; KEGG: cph:Cpha266_0318 FeoA family protein; FeoA family protein 823556..823783 Chlorobium limicola DSM 245 6356034 YP_001942814.1 CDS Clim_0754 NC_010803.1 823783 826143 D TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; Miro domain protein; KEGG: pvi:Cvib_0521 ferrous iron transport protein B; ferrous iron transport protein B 823783..826143 Chlorobium limicola DSM 245 6356035 YP_001942815.1 CDS Clim_0755 NC_010803.1 826222 826446 D KEGG: cph:Cpha266_0322 hypothetical protein; hypothetical protein 826222..826446 Chlorobium limicola DSM 245 6356036 YP_001942816.1 CDS Clim_0756 NC_010803.1 826553 826921 D KEGG: cph:Cpha266_0323 hypothetical protein; hypothetical protein 826553..826921 Chlorobium limicola DSM 245 6356037 YP_001942817.1 CDS Clim_0757 NC_010803.1 826962 827468 D TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: cph:Cpha266_0324 flavodoxin; flavodoxin 826962..827468 Chlorobium limicola DSM 245 6356038 YP_001942818.1 CDS Clim_0758 NC_010803.1 827561 827995 R KEGG: cph:Cpha266_0863 photosystem P840 reaction center protein PscD; photosystem P840 reaction center protein PscD complement(827561..827995) Chlorobium limicola DSM 245 6356039 YP_001942819.1 CDS Clim_0759 NC_010803.1 828239 829510 R PFAM: UMUC domain protein DNA-repair protein; KEGG: cph:Cpha266_1031 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(828239..829510) Chlorobium limicola DSM 245 6356040 YP_001942820.1 CDS dnaK NC_010803.1 830690 832609 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(830690..832609) Chlorobium limicola DSM 245 6356042 YP_001942821.1 CDS Clim_0762 NC_010803.1 832684 833088 R PFAM: heat shock protein Hsp20; KEGG: plt:Plut_0622 heat shock protein, HSP20 family; heat shock protein Hsp20 complement(832684..833088) Chlorobium limicola DSM 245 6356043 YP_001942822.1 CDS Clim_0763 NC_010803.1 833456 833854 R PFAM: regulatory protein ArsR; KEGG: plt:Plut_0623 ArsR family transcriptional regulator; ArsR family transcriptional regulator complement(833456..833854) Chlorobium limicola DSM 245 6356044 YP_001942823.1 CDS Clim_0764 NC_010803.1 833982 834248 R KEGG: cph:Cpha266_0867 transmembrane anti-sigma factor; transmembrane anti-sigma factor complement(833982..834248) Chlorobium limicola DSM 245 6356045 YP_001942824.1 CDS Clim_0765 NC_010803.1 834277 834906 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(834277..834906) Chlorobium limicola DSM 245 6356046 YP_001942825.1 CDS Clim_0766 NC_010803.1 835081 836649 D PFAM: amine oxidase; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cch:Cag_1888 carotenoid isomerase; amine oxidase 835081..836649 Chlorobium limicola DSM 245 6356047 YP_001942826.1 CDS Clim_0767 NC_010803.1 836851 838062 R PFAM: alanine dehydrogenase/PNT domain protein; KEGG: cph:Cpha266_0875 L-alanine dehydrogenase; alanine dehydrogenase/PNT domain-containing protein complement(836851..838062) Chlorobium limicola DSM 245 6356048 YP_001942827.1 CDS Clim_0768 NC_010803.1 838142 838822 R PFAM: ferredoxin; KEGG: cte:CT0651 chlorosome envelope protein J; ferredoxin complement(838142..838822) Chlorobium limicola DSM 245 6356049 YP_001942828.1 CDS Clim_0769 NC_010803.1 839008 839673 R PFAM: ferredoxin; KEGG: cph:Cpha266_0877 ferredoxin; ferredoxin complement(839008..839673) Chlorobium limicola DSM 245 6356050 YP_001942829.1 CDS Clim_0770 NC_010803.1 839888 843238 R KEGG: cph:Cpha266_0878 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor complement(839888..843238) Chlorobium limicola DSM 245 6356051 YP_001942830.1 CDS Clim_0771 NC_010803.1 843279 844259 D KEGG: cph:Cpha266_0879 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 843279..844259 Chlorobium limicola DSM 245 6356052 YP_001942831.1 CDS Clim_0772 NC_010803.1 844343 845044 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cph:Cpha266_0880 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 844343..845044 Chlorobium limicola DSM 245 6356053 YP_001942832.1 CDS Clim_0773 NC_010803.1 845047 846819 D KEGG: cph:Cpha266_0881 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 845047..846819 Chlorobium limicola DSM 245 6356054 YP_001942833.1 CDS Clim_0774 NC_010803.1 846836 848122 D PFAM: MscS Mechanosensitive ion channel; KEGG: pvi:Cvib_1145 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 846836..848122 Chlorobium limicola DSM 245 6356055 YP_001942834.1 CDS Clim_0775 NC_010803.1 848119 848652 R PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0883 NUDIX hydrolase; NUDIX hydrolase complement(848119..848652) Chlorobium limicola DSM 245 6356056 YP_001942835.1 CDS Clim_0776 NC_010803.1 848731 849201 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cph:Cpha266_0884 redoxin domain protein; alkyl hydroperoxide reductase 848731..849201 Chlorobium limicola DSM 245 6356057 YP_001942836.1 CDS Clim_0777 NC_010803.1 849210 849773 D PFAM: protein of unknown function DUF179; KEGG: cph:Cpha266_0885 protein of unknown function DUF179; hypothetical protein 849210..849773 Chlorobium limicola DSM 245 6356058 YP_001942837.1 CDS Clim_0778 NC_010803.1 850614 851180 D KEGG: cte:CT0686 hypothetical protein; hypothetical protein 850614..851180 Chlorobium limicola DSM 245 6356059 YP_001942838.1 CDS Clim_0779 NC_010803.1 851204 851527 D KEGG: ppd:Ppro_1272 hypothetical protein; hypothetical protein 851204..851527 Chlorobium limicola DSM 245 6356060 YP_001942839.1 CDS Clim_0780 NC_010803.1 851630 853075 D KEGG: cph:Cpha266_1446 hypothetical protein; hypothetical protein 851630..853075 Chlorobium limicola DSM 245 6356061 YP_001942840.1 CDS Clim_0781 NC_010803.1 853075 853710 D KEGG: cph:Cpha266_1445 hypothetical protein; hypothetical protein 853075..853710 Chlorobium limicola DSM 245 6356062 YP_001942841.1 CDS Clim_0782 NC_010803.1 853703 857068 D KEGG: cph:Cpha266_1444 hypothetical protein; hypothetical protein 853703..857068 Chlorobium limicola DSM 245 6356063 YP_001942842.1 CDS Clim_0783 NC_010803.1 857065 858240 D KEGG: cch:Cag_0844 hypothetical protein; hypothetical protein 857065..858240 Chlorobium limicola DSM 245 6356064 YP_001942843.1 CDS Clim_0784 NC_010803.1 858395 859090 D KEGG: gur:Gura_2921 hypothetical protein; hypothetical protein 858395..859090 Chlorobium limicola DSM 245 6356065 YP_001942844.1 CDS Clim_0785 NC_010803.1 859087 860325 D PFAM: AAA-4 family protein; KEGG: gur:Gura_2922 transcriptional regulator; transcriptional regulator 859087..860325 Chlorobium limicola DSM 245 6353855 YP_001942845.1 CDS Clim_0786 NC_010803.1 860463 861830 R PFAM: transposase IS4 family protein; KEGG: cph:Cpha266_2634 transposase, IS4 family protein; transposase IS4 family protein complement(860463..861830) Chlorobium limicola DSM 245 6353856 YP_001942846.1 CDS Clim_0787 NC_010803.1 861931 862122 D KEGG: dde:Dde_0697 response regulator receiver domain protein (CheY-like); hypothetical protein 861931..862122 Chlorobium limicola DSM 245 6353857 YP_001942847.1 CDS Clim_0788 NC_010803.1 862235 862513 D KEGG: cch:Cag_0844 hypothetical protein; hypothetical protein 862235..862513 Chlorobium limicola DSM 245 6353858 YP_001942848.1 CDS Clim_0789 NC_010803.1 862667 863401 R KEGG: cph:Cpha266_1517 conserved hypothetical cytosolic protein; hypothetical protein complement(862667..863401) Chlorobium limicola DSM 245 6353859 YP_001942849.1 CDS Clim_0790 NC_010803.1 863361 864242 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cph:Cpha266_1518 DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein complement(863361..864242) Chlorobium limicola DSM 245 6353860 YP_001942850.1 CDS Clim_0791 NC_010803.1 864572 866164 R TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; KEGG: cph:Cpha266_1177 bacterial peptide chain release factor 3 (bRF-3); peptide chain release factor 3 complement(864572..866164) Chlorobium limicola DSM 245 6353861 YP_001942851.1 CDS Clim_0792 NC_010803.1 866440 867771 D TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: cte:CT0822 sodium:alanine symporter family protein; amino acid carrier protein 866440..867771 Chlorobium limicola DSM 245 6353862 YP_001942852.1 CDS Clim_0793 NC_010803.1 867867 868400 D PFAM: Inorganic pyrophosphatase; KEGG: cph:Cpha266_1182 inorganic diphosphatase; inorganic diphosphatase 867867..868400 Chlorobium limicola DSM 245 6353863 YP_001942853.1 CDS Clim_0794 NC_010803.1 868609 869493 D PFAM: protein of unknown function DUF344; KEGG: plt:Plut_1276 hypothetical protein; hypothetical protein 868609..869493 Chlorobium limicola DSM 245 6353864 YP_001942854.1 CDS Clim_0795 NC_010803.1 869530 870960 D TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: cph:Cpha266_1185 fumarate hydratase, class II; class II fumarate hydratase 869530..870960 Chlorobium limicola DSM 245 6353865 YP_001942855.1 CDS Clim_0796 NC_010803.1 871558 872085 D TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: cph:Cpha266_1186 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 871558..872085 Chlorobium limicola DSM 245 6353866 YP_001942856.1 CDS Clim_0797 NC_010803.1 872140 873009 D PFAM: N-acetylneuraminic acid synthase domain; KEGG: cte:CT0825 sialic acid synthase; N-acetylneuraminate synthase 872140..873009 Chlorobium limicola DSM 245 6353867 YP_001942857.1 CDS Clim_0798 NC_010803.1 873384 874049 D KEGG: yli:YALI0D24365g hypothetical protein; hypothetical protein 873384..874049 Chlorobium limicola DSM 245 6353868 YP_001942858.1 CDS Clim_0799 NC_010803.1 874127 875005 D KEGG: cph:Cpha266_1026 hypothetical protein; hypothetical protein 874127..875005 Chlorobium limicola DSM 245 6353869 YP_001942859.1 CDS Clim_0800 NC_010803.1 875230 877131 D molecular chaperone; heat shock protein 90 875230..877131 Chlorobium limicola DSM 245 6353870 YP_001942860.1 CDS Clim_0801 NC_010803.1 877171 878046 D PFAM: protein of unknown function DUF125 transmembrane; KEGG: cph:Cpha266_1189 protein of unknown function DUF125, transmembrane; hypothetical protein 877171..878046 Chlorobium limicola DSM 245 6353871 YP_001942861.1 CDS Clim_0802 NC_010803.1 878200 879762 R KEGG: cph:Cpha266_1190 hypothetical protein; hypothetical protein complement(878200..879762) Chlorobium limicola DSM 245 6353872 YP_001942862.1 CDS Clim_0803 NC_010803.1 880047 880685 D PFAM: UspA domain protein; KEGG: pvi:Cvib_1021 UspA domain protein; UspA domain-containing protein 880047..880685 Chlorobium limicola DSM 245 6353873 YP_001942863.1 CDS Clim_0804 NC_010803.1 880735 882255 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: cph:Cpha266_1191 fumarase; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha 880735..882255 Chlorobium limicola DSM 245 6353874 YP_001942864.1 CDS Clim_0805 NC_010803.1 882329 882466 D hypothetical protein 882329..882466 Chlorobium limicola DSM 245 6353875 YP_001942865.1 CDS Clim_0806 NC_010803.1 882429 883475 R KEGG: cph:Cpha266_2139 transposase and inactivated derivatives; transposase and inactivated derivatives complement(882429..883475) Chlorobium limicola DSM 245 6353876 YP_001942866.1 CDS Clim_0807 NC_010803.1 883523 883717 D KEGG: plt:Plut_1268 sodium pump decarboxylase, gamma subunit; sodium pump decarboxylase subunit gamma 883523..883717 Chlorobium limicola DSM 245 6353877 YP_001942867.1 CDS Clim_0808 NC_010803.1 883783 885618 D PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; KEGG: plt:Plut_1267 oxaloacetate decarboxylase, alpha subunit; biotin/lipoyl attachment domain-containing protein 883783..885618 Chlorobium limicola DSM 245 6353878 YP_001942868.1 CDS Clim_0809 NC_010803.1 885666 887216 D KEGG: plt:Plut_1266 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; sodium ion-translocating decarboxylase subunit beta 885666..887216 Chlorobium limicola DSM 245 6353879 YP_001942869.1 CDS Clim_0810 NC_010803.1 887304 888506 R KEGG: cph:Cpha266_1193 internalin-related protein; internalin-like protein complement(887304..888506) Chlorobium limicola DSM 245 6353880 YP_001942870.1 CDS Clim_0811 NC_010803.1 888723 891086 D PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: cph:Cpha266_1194 kojibiose phosphorylase; Kojibiose phosphorylase 888723..891086 Chlorobium limicola DSM 245 6353881 YP_001942871.1 CDS Clim_0812 NC_010803.1 891317 894886 D KEGG: cph:Cpha266_1195 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 891317..894886 Chlorobium limicola DSM 245 6353882 YP_001942872.1 CDS Clim_0813 NC_010803.1 895009 895338 D TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: plt:Plut_1261 thioredoxin; thioredoxin 895009..895338 Chlorobium limicola DSM 245 6353883 YP_001942873.1 CDS Clim_0814 NC_010803.1 895413 896348 D KEGG: plt:Plut_1260 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; thioredoxin reductase 895413..896348 Chlorobium limicola DSM 245 6353884 YP_001942874.1 CDS Clim_0815 NC_010803.1 896424 896612 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pvi:Cvib_0749 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(896424..896612) Chlorobium limicola DSM 245 6353885 YP_001942875.1 CDS Clim_0816 NC_010803.1 896873 897238 D KEGG: pvi:Cvib_1008 hypothetical protein; hypothetical protein 896873..897238 Chlorobium limicola DSM 245 6353886 YP_001942876.1 CDS Clim_0817 NC_010803.1 897190 897849 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pvi:Cvib_1007 tRNA guanosine-2'-O-methyltransferase; tRNA guanosine-2'-O-methyltransferase complement(897190..897849) Chlorobium limicola DSM 245 6353887 YP_001942877.1 CDS Clim_0818 NC_010803.1 898267 899340 D PFAM: metallophosphoesterase; KEGG: cph:Cpha266_1199 hypothetical protein; metallophosphoesterase 898267..899340 Chlorobium limicola DSM 245 6353888 YP_001942878.1 CDS Clim_0819 NC_010803.1 899342 900250 D KEGG: cph:Cpha266_1201 hypothetical protein; hypothetical protein 899342..900250 Chlorobium limicola DSM 245 6353889 YP_001942879.1 CDS Clim_0820 NC_010803.1 900404 903157 D KEGG: cph:Cpha266_1202 hypothetical protein; hypothetical protein 900404..903157 Chlorobium limicola DSM 245 6353890 YP_001942880.1 CDS Clim_0821 NC_010803.1 903379 904464 D KEGG: gfo:GFO_0037 membrane protein containing adenylate/guanylate cyclase catalytic domain; adenylate/guanylate cyclase 903379..904464 Chlorobium limicola DSM 245 6353891 YP_001942881.1 CDS Clim_0822 NC_010803.1 904486 905679 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: fjo:Fjoh_4928 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(904486..905679) Chlorobium limicola DSM 245 6353892 YP_001942882.1 CDS Clim_0823 NC_010803.1 905755 906633 D PFAM: phosphoesterase PA-phosphatase related; KEGG: gfo:GFO_3394 secreted PAP2 superfamily protein; PA-phosphatase-like phosphoesterase 905755..906633 Chlorobium limicola DSM 245 6353893 YP_001942883.1 CDS Clim_0824 NC_010803.1 906868 907527 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_1237 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase complement(906868..907527) Chlorobium limicola DSM 245 6353894 YP_001942884.1 CDS Clim_0825 NC_010803.1 907559 908209 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_1238 methyltransferase type 11; type 12 methyltransferase complement(907559..908209) Chlorobium limicola DSM 245 6353895 YP_001942885.1 CDS Clim_0826 NC_010803.1 908310 908675 R PFAM: thioesterase superfamily protein; KEGG: cch:Cag_0621 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein complement(908310..908675) Chlorobium limicola DSM 245 6353896 YP_001942886.1 CDS Clim_0827 NC_010803.1 908806 910446 R PFAM: protein of unknown function DUF814; KEGG: cph:Cpha266_0942 protein of unknown function DUF814; hypothetical protein complement(908806..910446) Chlorobium limicola DSM 245 6353897 YP_001942887.1 CDS Clim_0828 NC_010803.1 910631 911155 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: plt:Plut_0726 deoxycytidylate deaminase; zinc-binding CMP/dCMP deaminase 910631..911155 Chlorobium limicola DSM 245 6353898 YP_001942888.1 CDS Clim_0829 NC_010803.1 911149 912267 D KEGG: cph:Cpha266_0944 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 911149..912267 Chlorobium limicola DSM 245 6353899 YP_001942889.1 CDS Clim_0830 NC_010803.1 912289 912738 D PFAM: DoxX family protein; KEGG: pvi:Cvib_1104 DoxX family protein; DoxX family protein 912289..912738 Chlorobium limicola DSM 245 6353900 YP_001942890.1 CDS Clim_0832 NC_010803.1 913877 914650 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: cph:Cpha266_0947 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 913877..914650 Chlorobium limicola DSM 245 6353902 YP_001942891.1 CDS tpx NC_010803.1 914899 915420 D antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 914899..915420 Chlorobium limicola DSM 245 6353903 YP_001942892.1 CDS Clim_0834 NC_010803.1 915887 917839 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cph:Cpha266_0951 alpha amylase, catalytic region; alpha amylase 915887..917839 Chlorobium limicola DSM 245 6353904 YP_001942893.1 CDS Clim_0835 NC_010803.1 917973 918632 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 917973..918632 Chlorobium limicola DSM 245 6353905 YP_001942894.1 CDS Clim_0836 NC_010803.1 918633 919982 D PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: pvi:Cvib_1101 recombination factor protein RarA; recombination factor protein RarA 918633..919982 Chlorobium limicola DSM 245 6353906 YP_001942895.1 CDS Clim_0837 NC_010803.1 920076 921464 D PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0954 outer membrane efflux protein; outer membrane efflux protein 920076..921464 Chlorobium limicola DSM 245 6353907 YP_001942896.1 CDS Clim_0838 NC_010803.1 921461 922411 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0955 methyltransferase type 12; type 12 methyltransferase complement(921461..922411) Chlorobium limicola DSM 245 6353908 YP_001942897.1 CDS Clim_0839 NC_010803.1 922429 922947 R PFAM: histidine triad (HIT) protein; KEGG: cph:Cpha266_0956 histidine triad (HIT) protein; histidine triad (HIT) protein complement(922429..922947) Chlorobium limicola DSM 245 6353909 YP_001942898.1 CDS Clim_0840 NC_010803.1 923278 923871 D KEGG: cph:Cpha266_0957 hypothetical protein; hypothetical protein 923278..923871 Chlorobium limicola DSM 245 6353912 YP_001942899.1 CDS Clim_0841 NC_010803.1 923853 924908 D PFAM: ferrochelatase; KEGG: pvi:Cvib_1096 ferrochelatase; ferrochelatase 923853..924908 Chlorobium limicola DSM 245 6353913 YP_001942900.1 CDS Clim_0842 NC_010803.1 924940 925545 D PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0959 hypothetical protein; hypothetical protein 924940..925545 Chlorobium limicola DSM 245 6353914 YP_001942901.1 CDS Clim_0843 NC_010803.1 925542 925793 D KEGG: pvi:Cvib_1094 hypothetical protein; hypothetical protein 925542..925793 Chlorobium limicola DSM 245 6353915 YP_001942902.1 CDS Clim_0844 NC_010803.1 926008 926439 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: cte:CT0766 NADH dehydrogenase I, subunit 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 926008..926439 Chlorobium limicola DSM 245 6353916 YP_001942903.1 CDS Clim_0845 NC_010803.1 926467 927036 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 926467..927036 Chlorobium limicola DSM 245 6353917 YP_001942904.1 CDS Clim_0846 NC_010803.1 927063 927590 D TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: cph:Cpha266_0963 NADH (or F420H2) dehydrogenase, subunit C; NADH (or F420H2) dehydrogenase subunit C 927063..927590 Chlorobium limicola DSM 245 6353918 YP_001942905.1 CDS Clim_0847 NC_010803.1 927639 928826 D PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: cph:Cpha266_0964 NADH dehydrogenase (ubiquinone); NADH dehydrogenase (quinone) 927639..928826 Chlorobium limicola DSM 245 6353919 YP_001942906.1 CDS Clim_0848 NC_010803.1 928823 929941 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: pvi:Cvib_1089 respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) 928823..929941 Chlorobium limicola DSM 245 6353920 YP_001942907.1 CDS Clim_0849 NC_010803.1 929987 930601 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pvi:Cvib_1088 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 929987..930601 Chlorobium limicola DSM 245 6353921 YP_001942908.1 CDS Clim_0850 NC_010803.1 930629 931150 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: pvi:Cvib_1087 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 930629..931150 Chlorobium limicola DSM 245 6353922 YP_001942909.1 CDS Clim_0851 NC_010803.1 931163 931480 D PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: cph:Cpha266_0968 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase chain 4L 931163..931480 Chlorobium limicola DSM 245 6353923 YP_001942910.1 CDS Clim_0852 NC_010803.1 931530 933842 D KEGG: cph:Cpha266_0969 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 931530..933842 Chlorobium limicola DSM 245 6353924 YP_001942911.1 CDS Clim_0853 NC_010803.1 933883 935520 D KEGG: cph:Cpha266_0970 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 933883..935520 Chlorobium limicola DSM 245 6353925 YP_001942912.1 CDS Clim_0854 NC_010803.1 935558 937093 D KEGG: cph:Cpha266_0971 proton-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N 935558..937093 Chlorobium limicola DSM 245 6353926 YP_001942913.1 CDS Clim_0855 NC_010803.1 937308 938393 D KEGG: cph:Cpha266_0972 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein; hydrogenase (NiFe) small subunit HydA 937308..938393 Chlorobium limicola DSM 245 6353927 YP_001942914.1 CDS Clim_0856 NC_010803.1 938407 940125 D PFAM: nickel-dependent hydrogenase large subunit; KEGG: cph:Cpha266_0973 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase large subunit 938407..940125 Chlorobium limicola DSM 245 6353928 YP_001942915.1 CDS Clim_0857 NC_010803.1 940138 940821 D TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: cph:Cpha266_0974 Ni/Fe-hydrogenase, b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 940138..940821 Chlorobium limicola DSM 245 6353929 YP_001942916.1 CDS Clim_0858 NC_010803.1 940818 941291 D TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: cph:Cpha266_0975 hydrogenase maturation protease; hydrogenase maturation protease 940818..941291 Chlorobium limicola DSM 245 6353930 YP_001942917.1 CDS folE NC_010803.1 941350 942009 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(941350..942009) Chlorobium limicola DSM 245 6353931 YP_001942918.1 CDS Clim_0860 NC_010803.1 941984 942433 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cph:Cpha266_0977 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; hypothetical protein complement(941984..942433) Chlorobium limicola DSM 245 6353932 YP_001942919.1 CDS Clim_0861 NC_010803.1 942684 943112 D PFAM: OsmC family protein; KEGG: cph:Cpha266_1720 OsmC family protein; OsmC family protein 942684..943112 Chlorobium limicola DSM 245 6354096 YP_001942920.1 CDS Clim_0862 NC_010803.1 943326 943634 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pvi:Cvib_1080 thioredoxin; thioredoxin 943326..943634 Chlorobium limicola DSM 245 6354097 YP_001942921.1 CDS Clim_0863 NC_010803.1 943696 944388 R PFAM: peptidase membrane zinc metallopeptidase KEGG: pvi:Cvib_1043 peptidase, membrane zinc metallopeptidase; peptidase membrane zinc metallopeptidase complement(943696..944388) Chlorobium limicola DSM 245 6354098 YP_001942922.1 CDS Clim_0864 NC_010803.1 944605 945948 D PFAM: peptidase S14 ClpP; protein of unknown function DUF107; KEGG: cph:Cpha266_1160 nodulation efficiency protein NfeD; hypothetical protein 944605..945948 Chlorobium limicola DSM 245 6354099 YP_001942923.1 CDS Clim_0865 NC_010803.1 945954 946718 D PFAM: hypothetical protein; KEGG: plt:Plut_1305 hypothetical protein; hypothetical protein 945954..946718 Chlorobium limicola DSM 245 6354100 YP_001942924.1 CDS Clim_0866 NC_010803.1 946731 947192 D PFAM: UspA domain protein; KEGG: plt:Plut_1294 universal stress protein family; UspA domain-containing protein 946731..947192 Chlorobium limicola DSM 245 6354101 YP_001942925.1 CDS Clim_0867 NC_010803.1 947217 948221 R functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase complement(947217..948221) Chlorobium limicola DSM 245 6354102 YP_001942926.1 CDS Clim_0868 NC_010803.1 948236 950383 R MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase complement(948236..950383) Chlorobium limicola DSM 245 6354103 YP_001942927.1 CDS Clim_0869 NC_010803.1 950380 952194 R PFAM: methylmalonyl-CoA mutase; KEGG: cph:Cpha266_1165 methylmalonyl-CoA mutase; methylmalonyl-CoA mutase complement(950380..952194) Chlorobium limicola DSM 245 6354104 YP_001942928.1 CDS Clim_0870 NC_010803.1 952181 953974 R KEGG: cph:Cpha266_1166 acetyl-CoA carboxylase alpha subunit-like; acetyl-CoA carboxylase subunit alpha-like protein complement(952181..953974) Chlorobium limicola DSM 245 6354105 YP_001942929.1 CDS Clim_0871 NC_010803.1 954004 954411 R TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cph:Cpha266_1167 methylmalonyl-CoA epimerase; methylmalonyl-CoA epimerase complement(954004..954411) Chlorobium limicola DSM 245 6354106 YP_001942930.1 CDS Clim_0872 NC_010803.1 954408 956330 R PFAM: AMP-dependent synthetase and ligase; KEGG: cph:Cpha266_1168 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(954408..956330) Chlorobium limicola DSM 245 6354107 YP_001942931.1 CDS ksgA NC_010803.1 956603 957394 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(956603..957394) Chlorobium limicola DSM 245 6354108 YP_001942932.1 CDS Clim_0874 NC_010803.1 957468 958448 D PFAM: transketolase; transketolase; KEGG: cph:Cpha266_1170 transketolase subunit B; transketolase 957468..958448 Chlorobium limicola DSM 245 6354109 YP_001942933.1 CDS Clim_0875 NC_010803.1 958509 958844 D PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1171 conserved hypothetical protein 103; hypothetical protein 958509..958844 Chlorobium limicola DSM 245 6354110 YP_001942934.1 CDS recR NC_010803.1 958851 959468 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 958851..959468 Chlorobium limicola DSM 245 6354111 YP_001942935.1 CDS Clim_0877 NC_010803.1 959522 960904 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1173 zeta-carotene desaturase; Carotene 7,8-desaturase 959522..960904 Chlorobium limicola DSM 245 6354112 YP_001942936.1 CDS Clim_0878 NC_010803.1 961221 961682 R hypothetical protein complement(961221..961682) Chlorobium limicola DSM 245 6354115 YP_001942937.1 CDS Clim_0879 NC_010803.1 961697 963985 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: cte:CT0815 copper-transporting ATPase, E1-E2 family; heavy metal translocating P-type ATPase complement(961697..963985) Chlorobium limicola DSM 245 6354116 YP_001942938.1 CDS Clim_0880 NC_010803.1 964413 965207 D KEGG: cph:Cpha266_1806 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein; serine O-acetyltransferase 964413..965207 Chlorobium limicola DSM 245 6354117 YP_001942939.1 CDS Clim_0881 NC_010803.1 965223 966416 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(965223..966416) Chlorobium limicola DSM 245 6354118 YP_001942940.1 CDS Clim_0882 NC_010803.1 966504 967490 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(966504..967490) Chlorobium limicola DSM 245 6354119 YP_001942941.1 CDS Clim_0883 NC_010803.1 967725 968717 D KEGG: cph:Cpha266_1803 hypothetical protein; hypothetical protein 967725..968717 Chlorobium limicola DSM 245 6354120 YP_001942942.1 CDS Clim_0884 NC_010803.1 968714 970030 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1802 amine oxidase; amine oxidase 968714..970030 Chlorobium limicola DSM 245 6354121 YP_001942943.1 CDS Clim_0885 NC_010803.1 970030 972123 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: cph:Cpha266_1801 integral membrane sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 970030..972123 Chlorobium limicola DSM 245 6354122 YP_001942944.1 CDS Clim_0886 NC_010803.1 972160 973296 R KEGG: plt:Plut_1434 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; sodium ion-translocating decarboxylase subunit beta complement(972160..973296) Chlorobium limicola DSM 245 6354123 YP_001942945.1 CDS Clim_0887 NC_010803.1 973302 973718 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: plt:Plut_1433 biotin carboxyl carrier protein; biotin/lipoyl attachment domain-containing protein complement(973302..973718) Chlorobium limicola DSM 245 6354124 YP_001942946.1 CDS Clim_0888 NC_010803.1 973721 974092 R KEGG: plt:Plut_1432 hypothetical protein; hypothetical protein complement(973721..974092) Chlorobium limicola DSM 245 6354125 YP_001942947.1 CDS Clim_0889 NC_010803.1 974106 975800 R PFAM: carboxyl transferase; KEGG: plt:Plut_1431 propionyl-CoA carboxylase beta chain; carboxyl transferase complement(974106..975800) Chlorobium limicola DSM 245 6354126 YP_001942948.1 CDS Clim_0890 NC_010803.1 975825 976604 D KEGG: cte:CT1430 myo-inositol-1(or 4)-monophosphatase; TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; histidinol-phosphate phosphatase 975825..976604 Chlorobium limicola DSM 245 6354127 YP_001942949.1 CDS Clim_0891 NC_010803.1 976598 977173 D KEGG: cph:Cpha266_1798 hypothetical protein; hypothetical protein 976598..977173 Chlorobium limicola DSM 245 6354128 YP_001942950.1 CDS Clim_0892 NC_010803.1 977210 977947 R PFAM: Uroporphyrinogen III synthase HEM4; KEGG: cph:Cpha266_1797 uroporphyrinogen-III synthase; uroporphyrinogen-III synthase complement(977210..977947) Chlorobium limicola DSM 245 6354129 YP_001942951.1 CDS hemC NC_010803.1 977947 978888 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(977947..978888) Chlorobium limicola DSM 245 6354130 YP_001942952.1 CDS hemA NC_010803.1 978914 980185 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(978914..980185) Chlorobium limicola DSM 245 6354131 YP_001942953.1 CDS Clim_0895 NC_010803.1 980287 981168 R PFAM: cytochrome c assembly protein; KEGG: plt:Plut_1425 HemX protein; cytochrome c assembly protein complement(980287..981168) Chlorobium limicola DSM 245 6354132 YP_001942954.1 CDS Clim_0896 NC_010803.1 981344 983170 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cph:Cpha266_1793 GTP-binding protein TypA; GTP-binding protein TypA 981344..983170 Chlorobium limicola DSM 245 6354133 YP_001942955.1 CDS Clim_0897 NC_010803.1 983306 984403 R KEGG: cte:CT1423 chlorophyllide reductase, BchX subunit; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; chlorophyllide reductase iron protein subunit X complement(983306..984403) Chlorobium limicola DSM 245 6354134 YP_001942956.1 CDS Clim_0898 NC_010803.1 984417 985421 R TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cph:Cpha266_1791 chlorophyll synthesis pathway, BchC; chlorophyll synthesis pathway protein BchC complement(984417..985421) Chlorobium limicola DSM 245 6354135 YP_001942957.1 CDS Clim_0899 NC_010803.1 985447 985920 R PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: cph:Cpha266_1790 2-vinyl bacteriochlorophyllide hydratase; 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD complement(985447..985920) Chlorobium limicola DSM 245 6354136 YP_001942958.1 CDS Clim_0900 NC_010803.1 986039 987724 R PFAM: extracellular solute-binding protein family 5; KEGG: cph:Cpha266_1789 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein complement(986039..987724) Chlorobium limicola DSM 245 6354137 YP_001942959.1 CDS Clim_0901 NC_010803.1 987805 988746 D PFAM: glucose-inhibited division protein A; HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aae:aq_500 thioredoxin reductase; thioredoxin-disulfide reductase 987805..988746 Chlorobium limicola DSM 245 6354138 YP_001942960.1 CDS Clim_0902 NC_010803.1 988753 989490 R PFAM: LmbE family protein; KEGG: cph:Cpha266_0824 LmbE family protein; LmbE family protein complement(988753..989490) Chlorobium limicola DSM 245 6354139 YP_001942961.1 CDS Clim_0903 NC_010803.1 989560 990021 D KEGG: cph:Cpha266_0825 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 989560..990021 Chlorobium limicola DSM 245 6354140 YP_001942962.1 CDS Clim_0904 NC_010803.1 990018 991457 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: plt:Plut_1417 two component transcriptional regulator, fis family; two component sigma-54 specific Fis family transcriptional regulator complement(990018..991457) Chlorobium limicola DSM 245 6354141 YP_001942963.1 CDS Clim_0905 NC_010803.1 991580 992176 R TIGRFAM: chlorosome envelope protein H; KEGG: cph:Cpha266_0826 chlorosome envelope protein H; chlorosome envelope protein H complement(991580..992176) Chlorobium limicola DSM 245 6354142 YP_001942964.1 CDS Clim_0906 NC_010803.1 992375 992557 D hypothetical protein 992375..992557 Chlorobium limicola DSM 245 6354143 YP_001942965.1 CDS Clim_0907 NC_010803.1 993039 993185 D KEGG: cph:Cpha266_1360 hypothetical protein; hypothetical protein 993039..993185 Chlorobium limicola DSM 245 6354144 YP_001942966.1 CDS Clim_0908 NC_010803.1 993309 993833 D KEGG: cph:Cpha266_1359 hypothetical protein; hypothetical protein 993309..993833 Chlorobium limicola DSM 245 6354145 YP_001942967.1 CDS Clim_0909 NC_010803.1 993954 994103 D hypothetical protein 993954..994103 Chlorobium limicola DSM 245 6354146 YP_001942968.1 CDS Clim_0910 NC_010803.1 994191 994649 D KEGG: cph:Cpha266_1357 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 994191..994649 Chlorobium limicola DSM 245 6354147 YP_001942969.1 CDS Clim_0911 NC_010803.1 994646 995767 D PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1356 glycosyl transferase, group 1; group 1 glycosyl transferase 994646..995767 Chlorobium limicola DSM 245 6354148 YP_001942970.1 CDS Clim_0912 NC_010803.1 995948 996238 D KEGG: cch:Cag_1041 hypothetical protein; hypothetical protein 995948..996238 Chlorobium limicola DSM 245 6354149 YP_001942971.1 CDS Clim_0913 NC_010803.1 996405 996575 D hypothetical protein 996405..996575 Chlorobium limicola DSM 245 6354150 YP_001942972.1 CDS Clim_0914 NC_010803.1 996661 997968 R PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_0827 glycosyl transferase, family 2; family 2 glycosyl transferase complement(996661..997968) Chlorobium limicola DSM 245 6354151 YP_001942973.1 CDS Clim_0915 NC_010803.1 997965 999020 R PFAM: Radical SAM domain protein; KEGG: cph:Cpha266_0829 radical SAM domain protein; radical SAM protein complement(997965..999020) Chlorobium limicola DSM 245 6354152 YP_001942974.1 CDS Clim_0916 NC_010803.1 999392 1000753 R PFAM: amine oxidase; KEGG: cte:CT1414 zeta-carotene desaturase; Carotene 7,8-desaturase complement(999392..1000753) Chlorobium limicola DSM 245 6354153 YP_001942975.1 CDS Clim_0917 NC_010803.1 1000886 1001083 R KEGG: cte:CT1413 hypothetical protein; hypothetical protein complement(1000886..1001083) Chlorobium limicola DSM 245 6354154 YP_001942976.1 CDS Clim_0918 NC_010803.1 1001336 1001863 D PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; KEGG: cph:Cpha266_0831 AsnC family transcriptional regulator; AsnC family transcriptional regulator 1001336..1001863 Chlorobium limicola DSM 245 6354155 YP_001942977.1 CDS Clim_0919 NC_010803.1 1001931 1004069 D PFAM: glutamine synthetase catalytic region; KEGG: cph:Cpha266_0832 glutamine synthetase, catalytic region; glutamine synthetase 1001931..1004069 Chlorobium limicola DSM 245 6354156 YP_001942978.1 CDS Clim_0920 NC_010803.1 1004135 1004554 R PFAM: protein of unknown function UPF0047; KEGG: cph:Cpha266_0833 protein of unknown function UPF0047; hypothetical protein complement(1004135..1004554) Chlorobium limicola DSM 245 6354157 YP_001942979.1 CDS Clim_0921 NC_010803.1 1004706 1004966 D KEGG: cph:Cpha266_1156 short-chain dehydrogenase/reductase SDR; hypothetical protein 1004706..1004966 Chlorobium limicola DSM 245 6354158 YP_001942980.1 CDS Clim_0922 NC_010803.1 1005048 1005578 D KEGG: cph:Cpha266_1487 protein of unknown function DUF1568; hypothetical protein 1005048..1005578 Chlorobium limicola DSM 245 6354159 YP_001942981.1 CDS Clim_0923 NC_010803.1 1005838 1006113 R KEGG: cte:CT0582 hypothetical protein; hypothetical protein complement(1005838..1006113) Chlorobium limicola DSM 245 6354160 YP_001942982.1 CDS Clim_0924 NC_010803.1 1006124 1006384 R KEGG: dol:Dole_1478 hypothetical protein; hypothetical protein complement(1006124..1006384) Chlorobium limicola DSM 245 6354161 YP_001942983.1 CDS Clim_0925 NC_010803.1 1006567 1007577 D PFAM: protein of unknown function DUF1568; KEGG: cph:Cpha266_1487 protein of unknown function DUF1568; hypothetical protein 1006567..1007577 Chlorobium limicola DSM 245 6354162 YP_001942984.1 CDS Clim_0926 NC_010803.1 1007635 1008843 R KEGG: gme:Gmet_1336 hypothetical protein; hypothetical protein complement(1007635..1008843) Chlorobium limicola DSM 245 6354163 YP_001942985.1 CDS Clim_0927 NC_010803.1 1009061 1009684 D KEGG: cph:Cpha266_2054 CRISPR-associated protein Cas1; CRISPR-associated protein Cas1 1009061..1009684 Chlorobium limicola DSM 245 6354164 YP_001942986.1 CDS Clim_0928 NC_010803.1 1012342 1012626 D TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: cph:Cpha266_2055 CRISPR-associated protein Cas2; CRISPR-associated protein Cas2 1012342..1012626 Chlorobium limicola DSM 245 6354165 YP_001942987.1 CDS Clim_0929 NC_010803.1 1012746 1014941 D TIGRFAM: CRISPR-associated protein Cas1; PFAM: RNA-directed DNA polymerase (Reverse transcriptase); protein of unknown function DUF48; KEGG: cph:Cpha266_2054 CRISPR-associated protein Cas1; CRISPR-associated protein Cas1 1012746..1014941 Chlorobium limicola DSM 245 6354166 YP_001942988.1 CDS Clim_0930 NC_010803.1 1017692 1018687 D TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; KEGG: pth:PTH_0707 hypothetical protein; Cmr1 family CRISPR-associated RAMP protein 1017692..1018687 Chlorobium limicola DSM 245 6354167 YP_001942989.1 CDS Clim_0931 NC_010803.1 1018684 1019955 D PFAM: protein of unknown function DUF324; KEGG: mma:MM_3357 hypothetical protein; hypothetical protein 1018684..1019955 Chlorobium limicola DSM 245 6354168 YP_001942990.1 CDS Clim_0932 NC_010803.1 1019952 1022768 D TIGRFAM: CRISPR-associated protein, Csx11 family; KEGG: rca:Rcas_4241 CRISPR-associated protein Csx11; CRISPR-associated protein, Csx11 family 1019952..1022768 Chlorobium limicola DSM 245 6354169 YP_001942991.1 CDS Clim_0933 NC_010803.1 1022761 1023753 D TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: pth:PTH_0712 hypothetical protein; Cmr4 family CRISPR-associated RAMP protein 1022761..1023753 Chlorobium limicola DSM 245 6354170 YP_001942992.1 CDS Clim_0934 NC_010803.1 1023750 1024124 D KEGG: rrs:RoseRS_2588 hypothetical protein; hypothetical protein 1023750..1024124 Chlorobium limicola DSM 245 6354171 YP_001942993.1 CDS Clim_0935 NC_010803.1 1024124 1024927 D KEGG: rca:Rcas_4238 hypothetical protein; hypothetical protein 1024124..1024927 Chlorobium limicola DSM 245 6354172 YP_001942994.1 CDS Clim_0936 NC_010803.1 1024986 1026407 D KEGG: cbh:CLC_2119 hypothetical protein; hypothetical protein 1024986..1026407 Chlorobium limicola DSM 245 6354173 YP_001942995.1 CDS Clim_0939 NC_010803.1 1027957 1028250 D PFAM: transposase IS3/IS911 family protein; KEGG: cph:Cpha266_2113 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1027957..1028250 Chlorobium limicola DSM 245 6354176 YP_001942996.1 CDS Clim_0940 NC_010803.1 1028247 1029167 D PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region; integrase catalytic subunit 1028247..1029167 Chlorobium limicola DSM 245 6353724 YP_001942997.1 CDS Clim_0942 NC_010803.1 1032492 1032644 D hypothetical protein 1032492..1032644 Chlorobium limicola DSM 245 6355391 YP_001942998.1 CDS Clim_0943 NC_010803.1 1032705 1033211 D KEGG: cph:Cpha266_0834 hypothetical protein; hypothetical protein 1032705..1033211 Chlorobium limicola DSM 245 6355392 YP_001942999.1 CDS Clim_0944 NC_010803.1 1033239 1034039 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 1033239..1034039 Chlorobium limicola DSM 245 6355393 YP_001943000.1 CDS aroB NC_010803.1 1034020 1035120 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(1034020..1035120) Chlorobium limicola DSM 245 6355394 YP_001943001.1 CDS aroK NC_010803.1 1035117 1035716 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(1035117..1035716) Chlorobium limicola DSM 245 6355395 YP_001943002.1 CDS Clim_0947 NC_010803.1 1035843 1038065 R KEGG: cph:Cpha266_0838 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; SMART: AAA ATPase; recombinase D complement(1035843..1038065) Chlorobium limicola DSM 245 6355396 YP_001943003.1 CDS Clim_0948 NC_010803.1 1038202 1038903 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 1038202..1038903 Chlorobium limicola DSM 245 6355397 YP_001943004.1 CDS Clim_0949 NC_010803.1 1039027 1039656 D hypothetical protein 1039027..1039656 Chlorobium limicola DSM 245 6355398 YP_001943005.1 CDS Clim_0950 NC_010803.1 1039817 1040497 D TIGRFAM: yecA family protein; KEGG: cch:Cag_0098 YgfB and YecA; yecA family protein 1039817..1040497 Chlorobium limicola DSM 245 6355399 YP_001943006.1 CDS Clim_0951 NC_010803.1 1040523 1041353 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cph:Cpha266_0189 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1040523..1041353 Chlorobium limicola DSM 245 6355400 YP_001943007.1 CDS Clim_0952 NC_010803.1 1041348 1042493 R PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: cph:Cpha266_0696 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; coenzyme F420 hydrogenase/dehydrogenase subunit beta domain-containing protein complement(1041348..1042493) Chlorobium limicola DSM 245 6355401 YP_001943008.1 CDS Clim_0953 NC_010803.1 1042663 1043256 R PFAM: protein of unknown function DUF218; KEGG: cph:Cpha266_0844 protein of unknown function DUF218; hypothetical protein complement(1042663..1043256) Chlorobium limicola DSM 245 6355402 YP_001943009.1 CDS Clim_0954 NC_010803.1 1043704 1043859 D hypothetical protein 1043704..1043859 Chlorobium limicola DSM 245 6355403 YP_001943010.1 CDS Clim_0955 NC_010803.1 1044094 1045317 D PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1074 uncharacterised conserved protein UCP016719; hypothetical protein 1044094..1045317 Chlorobium limicola DSM 245 6355404 YP_001943011.1 CDS Clim_0956 NC_010803.1 1045345 1046508 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase complement(1045345..1046508) Chlorobium limicola DSM 245 6355405 YP_001943012.1 CDS Clim_0957 NC_010803.1 1046560 1047696 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase complement(1046560..1047696) Chlorobium limicola DSM 245 6355406 YP_001943013.1 CDS Clim_0958 NC_010803.1 1047996 1048592 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cte:CT0972 anti-anti-sigma factor; anti-sigma-factor antagonist complement(1047996..1048592) Chlorobium limicola DSM 245 6355407 YP_001943014.1 CDS Clim_0959 NC_010803.1 1048742 1049692 R KEGG: cph:Cpha266_1081 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1048742..1049692) Chlorobium limicola DSM 245 6355408 YP_001943015.1 CDS Clim_0960 NC_010803.1 1049706 1050299 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: cph:Cpha266_1082 maf protein; maf protein complement(1049706..1050299) Chlorobium limicola DSM 245 6355409 YP_001943016.1 CDS Clim_0961 NC_010803.1 1050301 1052064 R PFAM: Na+/solute symporter; KEGG: cph:Cpha266_1083 Na+/solute symporter; Na+/solute symporter complement(1050301..1052064) Chlorobium limicola DSM 245 6355410 YP_001943017.1 CDS Clim_0962 NC_010803.1 1052143 1053054 R PFAM: PfkB domain protein; KEGG: cph:Cpha266_1084 PfkB domain protein; PfkB domain-containing protein complement(1052143..1053054) Chlorobium limicola DSM 245 6355411 YP_001943018.1 CDS Clim_0963 NC_010803.1 1053110 1055026 R KEGG: cph:Cpha266_1085 alpha-amylase family protein; alpha-amylase family protein complement(1053110..1055026) Chlorobium limicola DSM 245 6355412 YP_001943019.1 CDS truA NC_010803.1 1055167 1055898 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1055167..1055898 Chlorobium limicola DSM 245 6355413 YP_001943020.1 CDS Clim_0965 NC_010803.1 1056063 1057775 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: cph:Cpha266_1087 lytic transglycosylase, catalytic; lytic transglycosylase 1056063..1057775 Chlorobium limicola DSM 245 6355414 YP_001943021.1 CDS Clim_0966 NC_010803.1 1057977 1059170 D KEGG: cte:CT0980 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA 1057977..1059170 Chlorobium limicola DSM 245 6355415 YP_001943022.1 CDS Clim_0967 NC_010803.1 1059256 1060836 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(1059256..1060836) Chlorobium limicola DSM 245 6355416 YP_001943023.1 CDS Clim_0968 NC_010803.1 1061134 1062195 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1061134..1062195 Chlorobium limicola DSM 245 6355417 YP_001943024.1 CDS Clim_0969 NC_010803.1 1062225 1062428 D KEGG: cph:Cpha266_1091 hypothetical protein; hypothetical protein 1062225..1062428 Chlorobium limicola DSM 245 6355418 YP_001943025.1 CDS Clim_0970 NC_010803.1 1062515 1063648 D KEGG: cph:Cpha266_1092 hypothetical protein; hypothetical protein 1062515..1063648 Chlorobium limicola DSM 245 6355419 YP_001943026.1 CDS Clim_0971 NC_010803.1 1063752 1064417 R KEGG: cph:Cpha266_1093 hypothetical protein; hypothetical protein complement(1063752..1064417) Chlorobium limicola DSM 245 6355420 YP_001943027.1 CDS Clim_0972 NC_010803.1 1064520 1064861 R PFAM: nitrogen regulatory protein P-II; KEGG: plt:Plut_1164 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II complement(1064520..1064861) Chlorobium limicola DSM 245 6355421 YP_001943028.1 CDS Clim_0973 NC_010803.1 1064883 1066208 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: plt:Plut_1163 ammonium transporter; ammonium transporter complement(1064883..1066208) Chlorobium limicola DSM 245 6355422 YP_001943029.1 CDS Clim_0974 NC_010803.1 1066451 1066864 D KEGG: cph:Cpha266_1094 anti-sigma regulatory factor, serine/threonine protein kinase; anti-sigma regulatory factor, serine/threonine protein kinase 1066451..1066864 Chlorobium limicola DSM 245 6355423 YP_001943030.1 CDS pgi NC_010803.1 1067042 1068691 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1067042..1068691 Chlorobium limicola DSM 245 6355424 YP_001943031.1 CDS Clim_0976 NC_010803.1 1068676 1069716 R PFAM: ApbE family lipoprotein; KEGG: pvi:Cvib_0792 ApbE family lipoprotein; ApbE family lipoprotein complement(1068676..1069716) Chlorobium limicola DSM 245 6355425 YP_001943032.1 CDS Clim_0977 NC_010803.1 1069943 1072246 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A 1069943..1072246 Chlorobium limicola DSM 245 6355426 YP_001943033.1 CDS Clim_0978 NC_010803.1 1072246 1072662 D subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit B 1072246..1072662 Chlorobium limicola DSM 245 6355427 YP_001943034.1 CDS Clim_0979 NC_010803.1 1072659 1073018 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 1072659..1073018 Chlorobium limicola DSM 245 6355428 YP_001943035.1 CDS Clim_0980 NC_010803.1 1073022 1074530 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pvi:Cvib_1260 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 1073022..1074530 Chlorobium limicola DSM 245 6355429 YP_001943036.1 CDS Clim_0981 NC_010803.1 1074527 1075000 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit E 1074527..1075000 Chlorobium limicola DSM 245 6355430 YP_001943037.1 CDS Clim_0982 NC_010803.1 1074997 1075269 D PFAM: multiple resistance and pH regulation protein F; KEGG: pvi:Cvib_1262 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 1074997..1075269 Chlorobium limicola DSM 245 6355431 YP_001943038.1 CDS Clim_0983 NC_010803.1 1075266 1075613 D TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: pvi:Cvib_1263 monovalent cation/proton antiporter, MnhG/PhaG subunit; monovalent cation/proton antiporter subunit MnhG/PhaG 1075266..1075613 Chlorobium limicola DSM 245 6355432 YP_001943039.1 CDS Clim_0984 NC_010803.1 1075673 1076251 R TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: pvi:Cvib_0793 electron transport complex, RnfABCDGE type, A subunit; RnfABCDGE type electron transport complex subunit A complement(1075673..1076251) Chlorobium limicola DSM 245 6355433 YP_001943040.1 CDS Clim_0985 NC_010803.1 1076248 1076853 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE complement(1076248..1076853) Chlorobium limicola DSM 245 6355434 YP_001943041.1 CDS Clim_0986 NC_010803.1 1076850 1077395 R TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: plt:Plut_1157 electron transport complex, RnfABCDGE type, G subunit; RnfABCDGE type electron transport complex subunit G complement(1076850..1077395) Chlorobium limicola DSM 245 6355435 YP_001943042.1 CDS Clim_0987 NC_010803.1 1077392 1078366 R TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: pvi:Cvib_0796 electron transport complex, RnfABCDGE type, D subunit; RnfABCDGE type electron transport complex subunit D complement(1077392..1078366) Chlorobium limicola DSM 245 6355436 YP_001943043.1 CDS Clim_0988 NC_010803.1 1078387 1079712 R TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: pvi:Cvib_0797 electron transport complex, RnfABCDGE type, C subunit; RnfABCDGE type electron transport complex subunit C complement(1078387..1079712) Chlorobium limicola DSM 245 6355437 YP_001943044.1 CDS Clim_0989 NC_010803.1 1079713 1080552 R involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate; ferredoxin complement(1079713..1080552) Chlorobium limicola DSM 245 6355438 YP_001943045.1 CDS Clim_0990 NC_010803.1 1080559 1080951 R PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: pvi:Cvib_0799 hypothetical protein; sigma E positive regulator RseC/MucC complement(1080559..1080951) Chlorobium limicola DSM 245 6355439 YP_001943046.1 CDS Clim_0991 NC_010803.1 1081138 1082442 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1081138..1082442) Chlorobium limicola DSM 245 6355440 YP_001943047.1 CDS Clim_0992 NC_010803.1 1082530 1083945 R TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: cte:CT0990 polyA polymerase family protein; polynucleotide adenylyltransferase/metal dependent phosphohydrolase complement(1082530..1083945) Chlorobium limicola DSM 245 6355441 YP_001943048.1 CDS Clim_0993 NC_010803.1 1083972 1085006 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cph:Cpha266_1110 oxidoreductase domain protein; oxidoreductase domain-containing protein complement(1083972..1085006) Chlorobium limicola DSM 245 6355442 YP_001943049.1 CDS Clim_0994 NC_010803.1 1085036 1086310 R PFAM: major facilitator superfamily MFS_1; KEGG: cph:Cpha266_1111 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(1085036..1086310) Chlorobium limicola DSM 245 6355443 YP_001943050.1 CDS Clim_0995 NC_010803.1 1086414 1087280 R PFAM: periplasmic binding protein; KEGG: cch:Cag_0726 ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein complement(1086414..1087280) Chlorobium limicola DSM 245 6355444 YP_001943051.1 CDS Clim_0996 NC_010803.1 1087267 1087668 R PFAM: NUDIX hydrolase; KEGG: cch:Cag_0727 NUDIX/MutT family protein; NUDIX hydrolase complement(1087267..1087668) Chlorobium limicola DSM 245 6355445 YP_001943052.1 CDS Clim_0997 NC_010803.1 1087914 1088279 D KEGG: cch:Cag_1259 hypothetical protein; hypothetical protein 1087914..1088279 Chlorobium limicola DSM 245 6355446 YP_001943053.1 CDS Clim_0998 NC_010803.1 1088340 1088927 D PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_1260 XRE family transcriptional regulator; XRE family transcriptional regulator 1088340..1088927 Chlorobium limicola DSM 245 6355447 YP_001943054.1 CDS Clim_0999 NC_010803.1 1089153 1089626 D PFAM: cyclase/dehydrase; KEGG: cte:CT0933 hypothetical protein; cyclase/dehydrase 1089153..1089626 Chlorobium limicola DSM 245 6355448 YP_001943055.1 CDS Clim_1000 NC_010803.1 1089638 1091317 D PFAM: Na+/Picotransporter; KEGG: cph:Cpha266_1114 Na+/Pi-cotransporter; Na+/Picotransporter 1089638..1091317 Chlorobium limicola DSM 245 6355449 YP_001943056.1 CDS Clim_1001 NC_010803.1 1092108 1093994 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_2970 TonB-dependent receptor protein; TonB-dependent receptor 1092108..1093994 Chlorobium limicola DSM 245 6355450 YP_001943057.1 CDS Clim_1002 NC_010803.1 1094062 1094376 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT0409 ferredoxin, 4Fe-4S; 4Fe-4S ferredoxin 1094062..1094376 Chlorobium limicola DSM 245 6355451 YP_001943058.1 CDS Clim_1003 NC_010803.1 1094425 1095642 D PFAM: periplasmic binding protein; KEGG: cte:CT0410 iron(III) ABC transporter, periplasmic iron-binding protein; periplasmic binding protein 1094425..1095642 Chlorobium limicola DSM 245 6355452 YP_001943059.1 CDS Clim_1004 NC_010803.1 1095644 1096738 D PFAM: transport system permease protein; KEGG: cte:CT0411 iron(III) ABC transporter, permease protein; transport system permease 1095644..1096738 Chlorobium limicola DSM 245 6355453 YP_001943060.1 CDS Clim_1005 NC_010803.1 1096735 1097832 D PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cte:CT0412 iron(III) ABC transporter, ATP-binding protein; ABC transporter 1096735..1097832 Chlorobium limicola DSM 245 6355454 YP_001943061.1 CDS Clim_1006 NC_010803.1 1097829 1099019 D KEGG: cte:CT0413 iron complex transport system substrate-binding protein; iron complex transport system substrate-binding protein 1097829..1099019 Chlorobium limicola DSM 245 6355455 YP_001943062.1 CDS Clim_1007 NC_010803.1 1099016 1100176 D PFAM: protein of unknown function DUF105; KEGG: cte:CT0414 hypothetical protein; hypothetical protein 1099016..1100176 Chlorobium limicola DSM 245 6355456 YP_001943063.1 CDS Clim_1008 NC_010803.1 1100164 1101720 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cte:CT0415 carbon-nitrogen hydrolase family protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1100164..1101720 Chlorobium limicola DSM 245 6355457 YP_001943064.1 CDS Clim_1009 NC_010803.1 1101717 1102538 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT0390 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 1101717..1102538 Chlorobium limicola DSM 245 6355458 YP_001943065.1 CDS Clim_1010 NC_010803.1 1102538 1103464 D PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; anaerobic cobalt chelatase; KEGG: cte:CT0389 cobalt chelatase CbiK; anaerobic cobalt chelatase 1102538..1103464 Chlorobium limicola DSM 245 6355459 YP_001943066.1 CDS Clim_1011 NC_010803.1 1103457 1104215 D TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT0388 precorrin-2 C20-methyltransferase; precorrin-2 C(20)-methyltransferase 1103457..1104215 Chlorobium limicola DSM 245 6355460 YP_001943067.1 CDS Clim_1012 NC_010803.1 1104217 1105635 D TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Precorrin-8X methylmutase CbiC/CobH; KEGG: cte:CT0387 precorrin-3B C17-methyltransferase/precorrin-8X methylmutase; precorrin-3B C(17)-methyltransferase 1104217..1105635 Chlorobium limicola DSM 245 6355461 YP_001943068.1 CDS Clim_1013 NC_010803.1 1105628 1106842 D KEGG: cte:CT0386 precorrin-6y C5,15-methyltransferase, decarboxylating; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE 1105628..1106842 Chlorobium limicola DSM 245 6355462 YP_001943069.1 CDS Clim_1014 NC_010803.1 1106839 1108719 D KEGG: cte:CT0385 precorrin-4 C11-methyltransferase/cobalamin biosynthesis protein; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein; precorrin-4 C(11)-methyltransferase 1106839..1108719 Chlorobium limicola DSM 245 6355463 YP_001943070.1 CDS Clim_1016 NC_010803.1 1110608 1111618 D PFAM: xylose isomerase; KEGG: cte:CT0416 hypothetical protein; xylose isomerase 1110608..1111618 Chlorobium limicola DSM 245 6355465 YP_001943071.1 CDS Clim_1017 NC_010803.1 1111615 1112652 D PFAM: Radical SAM domain protein; KEGG: cte:CT0417 AslB/AtsB family protein; radical SAM protein 1111615..1112652 Chlorobium limicola DSM 245 6355466 YP_001943072.1 CDS Clim_1018 NC_010803.1 1112649 1116428 D PFAM: CobN/magnesium chelatase; KEGG: cte:CT0418 cobalamin biosynthesis protein CobN; cobaltochelatase 1112649..1116428 Chlorobium limicola DSM 245 6355467 YP_001943073.1 CDS Clim_1019 NC_010803.1 1116425 1118143 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ppd:Ppro_1260 TonB-dependent receptor; TonB-dependent receptor 1116425..1118143 Chlorobium limicola DSM 245 6355468 YP_001943074.1 CDS Clim_1020 NC_010803.1 1118152 1120113 D KEGG: cte:CT0420 magnesium-chelatase, subunit D/I family; TIGRFAM: cobaltochelatase subunit; PFAM: magnesium chelatase ChlI subunit; von Willebrand factor type A; ATPase associated with various cellular activities AAA_5; cobaltochelatase subunit 1118152..1120113 Chlorobium limicola DSM 245 6355469 YP_001943075.1 CDS Clim_1021 NC_010803.1 1120110 1121153 D KEGG: cte:CT0421 magnesium-chelatase, subunit I family; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase; magnesium chelatase 1120110..1121153 Chlorobium limicola DSM 245 6355470 YP_001943076.1 CDS Clim_1022 NC_010803.1 1121174 1124926 D PFAM: CobN/magnesium chelatase; KEGG: cte:CT0422 CobN protein; cobaltochelatase 1121174..1124926 Chlorobium limicola DSM 245 6354485 YP_001943077.1 CDS Clim_1023 NC_010803.1 1125498 1127807 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cte:CT0423 receptor; TonB-dependent receptor plug 1125498..1127807 Chlorobium limicola DSM 245 6353725 YP_001943078.1 CDS Clim_1024 NC_010803.1 1127811 1129004 D KEGG: cte:CT0413 iron complex transport system substrate-binding protein; iron complex transport system substrate-binding protein 1127811..1129004 Chlorobium limicola DSM 245 6353726 YP_001943079.1 CDS Clim_1025 NC_010803.1 1129199 1130710 R KEGG: azo:azo3307 probable coenzyme A transferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase complement(1129199..1130710) Chlorobium limicola DSM 245 6353727 YP_001943080.1 CDS Clim_1026 NC_010803.1 1131113 1131973 D PFAM: protein of unknown function DUF399; KEGG: bfs:BF3448 hypothetical protein; hypothetical protein 1131113..1131973 Chlorobium limicola DSM 245 6353728 YP_001943081.1 CDS Clim_1027 NC_010803.1 1132025 1132438 R KEGG: cph:Cpha266_0191 hypothetical protein; hypothetical protein complement(1132025..1132438) Chlorobium limicola DSM 245 6353729 YP_001943082.1 CDS Clim_1028 NC_010803.1 1132762 1134117 D KEGG: cph:Cpha266_2262 hypothetical protein; hypothetical protein 1132762..1134117 Chlorobium limicola DSM 245 6353730 YP_001943083.1 CDS Clim_1029 NC_010803.1 1134140 1135759 D KEGG: cph:Cpha266_2261 DnaK like protein; DnaK like protein 1134140..1135759 Chlorobium limicola DSM 245 6353731 YP_001943084.1 CDS Clim_1030 NC_010803.1 1135937 1137475 D PFAM: ATPase AAA; SMART: AAA ATPase; KEGG: cph:Cpha266_2260 AAA ATPase, central domain protein; ATPase AAA 1135937..1137475 Chlorobium limicola DSM 245 6353732 YP_001943085.1 CDS Clim_1031 NC_010803.1 1137631 1138428 D PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_2259 protein of unknown function DUF323; hypothetical protein 1137631..1138428 Chlorobium limicola DSM 245 6353733 YP_001943086.1 CDS Clim_1032 NC_010803.1 1138590 1138784 D KEGG: cte:CT1578 integrase/recombinase-related protein; integrase/recombinase-like protein 1138590..1138784 Chlorobium limicola DSM 245 6353734 YP_001943087.1 CDS Clim_1033 NC_010803.1 1138935 1140017 D KEGG: azc:AZC_0339 hypothetical protein; hypothetical protein 1138935..1140017 Chlorobium limicola DSM 245 6353735 YP_001943088.1 CDS Clim_1034 NC_010803.1 1140211 1141089 D KEGG: aeh:Mlg_0384 hypothetical protein; hypothetical protein 1140211..1141089 Chlorobium limicola DSM 245 6353736 YP_001943089.1 CDS Clim_1035 NC_010803.1 1141067 1141636 D KEGG: mmw:Mmwyl1_1516 hypothetical protein; hypothetical protein 1141067..1141636 Chlorobium limicola DSM 245 6353737 YP_001943090.1 CDS Clim_1036 NC_010803.1 1142237 1143250 D PFAM: Patatin; KEGG: hiq:CGSHiGG_03920 patatin; patatin 1142237..1143250 Chlorobium limicola DSM 245 6353738 YP_001943091.1 CDS Clim_1037 NC_010803.1 1143262 1144137 D hypothetical protein 1143262..1144137 Chlorobium limicola DSM 245 6353739 YP_001943092.1 CDS Clim_1038 NC_010803.1 1144139 1145389 D hypothetical protein 1144139..1145389 Chlorobium limicola DSM 245 6353740 YP_001943093.1 CDS Clim_1039 NC_010803.1 1145526 1145657 D hypothetical protein 1145526..1145657 Chlorobium limicola DSM 245 6353741 YP_001943094.1 CDS Clim_1040 NC_010803.1 1146115 1146243 R hypothetical protein complement(1146115..1146243) Chlorobium limicola DSM 245 6353742 YP_001943095.1 CDS Clim_1041 NC_010803.1 1146473 1146622 D hypothetical protein 1146473..1146622 Chlorobium limicola DSM 245 6353743 YP_001943096.1 CDS Clim_1042 NC_010803.1 1146693 1146932 D KEGG: cte:CT1927 hypothetical protein; hypothetical protein 1146693..1146932 Chlorobium limicola DSM 245 6353744 YP_001943097.1 CDS Clim_1043 NC_010803.1 1146985 1147167 D KEGG: cph:Cpha266_2199 hypothetical protein; hypothetical protein 1146985..1147167 Chlorobium limicola DSM 245 6353745 YP_001943098.1 CDS Clim_1044 NC_010803.1 1147792 1148739 D PFAM: HpcH/HpaI aldolase; KEGG: cph:Cpha266_2198 HpcH/HpaI aldolase; HpcH/HpaI aldolase 1147792..1148739 Chlorobium limicola DSM 245 6353746 YP_001943099.1 CDS Clim_1045 NC_010803.1 1148985 1149389 D KEGG: cph:Cpha266_2231 hypothetical protein; hypothetical protein 1148985..1149389 Chlorobium limicola DSM 245 6353747 YP_001943100.1 CDS Clim_1048 NC_010803.1 1151042 1151320 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: cph:Cpha266_2187 prevent-host-death family protein; prevent-host-death family protein 1151042..1151320 Chlorobium limicola DSM 245 6353750 YP_001943101.1 CDS Clim_1050 NC_010803.1 1151456 1153018 R PFAM: transposase IS4 family protein; KEGG: amt:Amet_3130 transposase, IS4 family protein; transposase IS4 family protein complement(1151456..1153018) Chlorobium limicola DSM 245 6353752 YP_001943102.1 CDS Clim_1051 NC_010803.1 1153542 1153670 R hypothetical protein complement(1153542..1153670) Chlorobium limicola DSM 245 6353753 YP_001943103.1 CDS Clim_1053 NC_010803.1 1153920 1154522 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: aba:Acid345_3867 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(1153920..1154522) Chlorobium limicola DSM 245 6353755 YP_001943104.1 CDS Clim_1055 NC_010803.1 1154853 1155500 D KEGG: pnu:Pnuc_0548 hypothetical protein; hypothetical protein 1154853..1155500 Chlorobium limicola DSM 245 6353757 YP_001943105.1 CDS Clim_1057 NC_010803.1 1159062 1161227 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1159062..1161227 Chlorobium limicola DSM 245 6353759 YP_001943106.1 CDS Clim_1058 NC_010803.1 1161227 1161961 D TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: pvi:Cvib_0808 anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 1161227..1161961 Chlorobium limicola DSM 245 6353760 YP_001943107.1 CDS Clim_1059 NC_010803.1 1162013 1162804 D KEGG: cph:Cpha266_0487 hypothetical protein; hypothetical protein 1162013..1162804 Chlorobium limicola DSM 245 6353761 YP_001943108.1 CDS Clim_1060 NC_010803.1 1162820 1163584 D catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 1162820..1163584 Chlorobium limicola DSM 245 6353762 YP_001943109.1 CDS Clim_1061 NC_010803.1 1163584 1163895 D periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 1163584..1163895 Chlorobium limicola DSM 245 6353763 YP_001943110.1 CDS Clim_1062 NC_010803.1 1163892 1164686 D TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cte:CT0392 cobalt transport protein; cobalt ABC transporter inner membrane subunit CbiQ 1163892..1164686 Chlorobium limicola DSM 245 6353764 YP_001943111.1 CDS Clim_1063 NC_010803.1 1164680 1165534 D KEGG: cte:CT0391 cobalt transport protein; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter; SMART: AAA ATPase; cobalt ABC transporter ATPase 1164680..1165534 Chlorobium limicola DSM 245 6353765 YP_001943112.1 CDS Clim_1064 NC_010803.1 1166075 1168060 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cph:Cpha266_1115 TonB-dependent receptor; TonB-dependent receptor 1166075..1168060 Chlorobium limicola DSM 245 6353766 YP_001943113.1 CDS Clim_1065 NC_010803.1 1168200 1168844 D KEGG: cch:Cag_1013 nitroreductase family protein; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; cob(II)yrinic acid a,c-diamide reductase 1168200..1168844 Chlorobium limicola DSM 245 6353767 YP_001943114.1 CDS Clim_1066 NC_010803.1 1168838 1170349 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1168838..1170349 Chlorobium limicola DSM 245 6353768 YP_001943115.1 CDS Clim_1067 NC_010803.1 1170346 1171425 D TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: cph:Cpha266_1118 L-threonine O-3-phosphate decarboxylase; L-threonine-O-3-phosphate decarboxylase 1170346..1171425 Chlorobium limicola DSM 245 6354717 YP_001943116.1 CDS cobD NC_010803.1 1171425 1172390 D CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1171425..1172390 Chlorobium limicola DSM 245 6354718 YP_001943117.1 CDS Clim_1069 NC_010803.1 1172439 1172975 D TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cph:Cpha266_1120 cob(I)yrinic acid a,c-diamide adenosyltransferase; cob(I)alamin adenosyltransferase 1172439..1172975 Chlorobium limicola DSM 245 6354258 YP_001943118.1 CDS Clim_1070 NC_010803.1 1172983 1174011 D PFAM: transport system permease protein; KEGG: pvi:Cvib_0818 transport system permease protein; transport system permease 1172983..1174011 Chlorobium limicola DSM 245 6355712 YP_001943119.1 CDS Clim_1071 NC_010803.1 1174303 1175586 D PFAM: SMC domain protein; ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_1122 ABC transporter; ABC transporter 1174303..1175586 Chlorobium limicola DSM 245 6355713 YP_001943120.1 CDS Clim_1072 NC_010803.1 1175597 1176391 D PFAM: xylose isomerase; KEGG: cch:Cag_1076 hypothetical protein; xylose isomerase 1175597..1176391 Chlorobium limicola DSM 245 6355714 YP_001943121.1 CDS Clim_1073 NC_010803.1 1176352 1179084 R PFAM: Cna B domain protein; KEGG: plt:Plut_1105 hypothetical protein; Cna B domain-containing protein complement(1176352..1179084) Chlorobium limicola DSM 245 6355715 YP_001943122.1 CDS Clim_1074 NC_010803.1 1179115 1179924 R KEGG: plt:Plut_1104 hypothetical protein; hypothetical protein complement(1179115..1179924) Chlorobium limicola DSM 245 6355716 YP_001943123.1 CDS Clim_1075 NC_010803.1 1179924 1180544 R KEGG: plt:Plut_1095 hypothetical protein; hypothetical protein complement(1179924..1180544) Chlorobium limicola DSM 245 6355717 YP_001943124.1 CDS Clim_1076 NC_010803.1 1180544 1181182 R KEGG: plt:Plut_1100 hypothetical protein; hypothetical protein complement(1180544..1181182) Chlorobium limicola DSM 245 6355718 YP_001943125.1 CDS Clim_1077 NC_010803.1 1181564 1182100 R hypothetical protein complement(1181564..1182100) Chlorobium limicola DSM 245 6355719 YP_001943126.1 CDS Clim_1078 NC_010803.1 1182193 1182708 D PFAM: cobalbumin biosynthesis protein; KEGG: cte:CT0945 cobalamin biosynthesis protein CobP; adenosylcobinamide-phosphate guanylyltransferase 1182193..1182708 Chlorobium limicola DSM 245 6355720 YP_001943127.1 CDS cobT NC_010803.1 1182900 1183970 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1182900..1183970 Chlorobium limicola DSM 245 6355721 YP_001943128.1 CDS Clim_1080 NC_010803.1 1183986 1184876 D PFAM: alpha/beta hydrolase fold; Ndr family protein; KEGG: cph:Cpha266_2528 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1183986..1184876 Chlorobium limicola DSM 245 6355722 YP_001943129.1 CDS Clim_1081 NC_010803.1 1184879 1185628 D TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cte:CT0948 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase 1184879..1185628 Chlorobium limicola DSM 245 6355723 YP_001943130.1 CDS Clim_1082 NC_010803.1 1185645 1186577 R KEGG: cph:Cpha266_1560 hypothetical protein; hypothetical protein complement(1185645..1186577) Chlorobium limicola DSM 245 6355724 YP_001943131.1 CDS Clim_1083 NC_010803.1 1186729 1189392 R KEGG: gfo:GFO_0848 two-component system sensor histidine kinase/response regulator hybrid; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; multi-sensor hybrid histidine kinase complement(1186729..1189392) Chlorobium limicola DSM 245 6355725 YP_001943132.1 CDS Clim_1084 NC_010803.1 1189528 1192194 R KEGG: cph:Cpha266_1553 hypothetical protein; hypothetical protein complement(1189528..1192194) Chlorobium limicola DSM 245 6355726 YP_001943133.1 CDS Clim_1085 NC_010803.1 1192220 1192573 R PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1552 uncharacterised conserved protein UCP025560; hypothetical protein complement(1192220..1192573) Chlorobium limicola DSM 245 6355727 YP_001943134.1 CDS Clim_1086 NC_010803.1 1192590 1192796 R KEGG: cph:Cpha266_1551 hypothetical protein; hypothetical protein complement(1192590..1192796) Chlorobium limicola DSM 245 6355728 YP_001943135.1 CDS Clim_1087 NC_010803.1 1192829 1193302 R KEGG: pvi:Cvib_0834 hypothetical protein; hypothetical protein complement(1192829..1193302) Chlorobium limicola DSM 245 6355729 YP_001943136.1 CDS Clim_1088 NC_010803.1 1193488 1193817 D PFAM: small multidrug resistance protein; KEGG: gsu:GSU0708 multidrug resistance protein; small multidrug resistance protein 1193488..1193817 Chlorobium limicola DSM 245 6355730 YP_001943137.1 CDS Clim_1089 NC_010803.1 1193786 1194280 R KEGG: fal:FRAAL1779 integral membrane acyltransferase; hypothetical protein complement(1193786..1194280) Chlorobium limicola DSM 245 6355731 YP_001943138.1 CDS Clim_1090 NC_010803.1 1194328 1194747 R KEGG: pde:Pden_2389 hypothetical protein; hypothetical protein complement(1194328..1194747) Chlorobium limicola DSM 245 6355732 YP_001943139.1 CDS Clim_1091 NC_010803.1 1194744 1195388 R KEGG: cph:Cpha266_1345 hypothetical protein; hypothetical protein complement(1194744..1195388) Chlorobium limicola DSM 245 6355733 YP_001943140.1 CDS Clim_1092 NC_010803.1 1195512 1196480 D KEGG: cph:Cpha266_0294 hypothetical protein; hypothetical protein 1195512..1196480 Chlorobium limicola DSM 245 6355734 YP_001943141.1 CDS Clim_1093 NC_010803.1 1196706 1197512 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cte:CT1215 thioredoxin; thioredoxin 1196706..1197512 Chlorobium limicola DSM 245 6355735 YP_001943142.1 CDS Clim_1094 NC_010803.1 1197598 1198191 D KEGG: cph:Cpha266_0980 5 nucleotidase, deoxy, cytosolic type C; 5' nucleotidase 1197598..1198191 Chlorobium limicola DSM 245 6355736 YP_001943143.1 CDS Clim_1095 NC_010803.1 1198273 1198788 R KEGG: pvi:Cvib_1062 hypothetical protein; hypothetical protein complement(1198273..1198788) Chlorobium limicola DSM 245 6355737 YP_001943144.1 CDS Clim_1096 NC_010803.1 1198898 1200079 R PFAM: Protein of unknown function methylase SMART: PUA domain containing protein; KEGG: plt:Plut_1226 hypothetical protein; hypothetical protein complement(1198898..1200079) Chlorobium limicola DSM 245 6355738 YP_001943145.1 CDS Clim_1097 NC_010803.1 1200301 1201161 D KEGG: cph:Cpha266_0982 hypothetical protein; hypothetical protein 1200301..1201161 Chlorobium limicola DSM 245 6355739 YP_001943146.1 CDS Clim_1098 NC_010803.1 1201279 1201881 R PFAM: manganese and iron superoxide dismutase; KEGG: cte:CT1211 superoxide dismutase; superoxide dismutase complement(1201279..1201881) Chlorobium limicola DSM 245 6355740 YP_001943147.1 CDS Clim_1099 NC_010803.1 1202015 1202377 D KEGG: plt:Plut_1223 hypothetical protein; hypothetical protein 1202015..1202377 Chlorobium limicola DSM 245 6355741 YP_001943148.1 CDS coaE NC_010803.1 1202374 1203027 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1202374..1203027 Chlorobium limicola DSM 245 6355742 YP_001943149.1 CDS Clim_1101 NC_010803.1 1203007 1204032 R PFAM: esterase; KEGG: cph:Cpha266_0986 esterase; esterase complement(1203007..1204032) Chlorobium limicola DSM 245 6355743 YP_001943150.1 CDS Clim_1102 NC_010803.1 1204029 1205048 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: cph:Cpha266_0987 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC complement(1204029..1205048) Chlorobium limicola DSM 245 6355744 YP_001943151.1 CDS Clim_1103 NC_010803.1 1205250 1206224 D PFAM: Polyprenyl synthetase; KEGG: cph:Cpha266_0988 trans-hexaprenyltranstransferase; polyprenyl synthetase 1205250..1206224 Chlorobium limicola DSM 245 6355745 YP_001943152.1 CDS Clim_1104 NC_010803.1 1206281 1207015 D PFAM: PASTA domain containing protein; KEGG: cph:Cpha266_0989 PASTA domain containing protein; protein PASTA domain-containing protein 1206281..1207015 Chlorobium limicola DSM 245 6355746 YP_001943153.1 CDS Clim_1105 NC_010803.1 1207033 1207203 R KEGG: cch:Cag_1501 hypothetical protein; hypothetical protein complement(1207033..1207203) Chlorobium limicola DSM 245 6355747 YP_001943154.1 CDS Clim_1106 NC_010803.1 1207274 1207573 R KEGG: plt:Plut_0918 hypothetical protein; hypothetical protein complement(1207274..1207573) Chlorobium limicola DSM 245 6355748 YP_001943155.1 CDS Clim_1107 NC_010803.1 1207723 1209135 D PFAM: Chloride channel core; KEGG: cte:CT1391 chloride channel; chloride channel core protein 1207723..1209135 Chlorobium limicola DSM 245 6355749 YP_001943156.1 CDS Clim_1108 NC_010803.1 1208949 1210307 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_0993 ABC transporter; ABC transporter complement(1208949..1210307) Chlorobium limicola DSM 245 6355750 YP_001943157.1 CDS Clim_1109 NC_010803.1 1210314 1211270 R PFAM: Alcohol dehydrogenase GroES domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: cph:Cpha266_0994 alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase GroES domain-containing protein complement(1210314..1211270) Chlorobium limicola DSM 245 6355751 YP_001943158.1 CDS Clim_1110 NC_010803.1 1211305 1211646 R PFAM: membrane protein of unknown function; KEGG: cph:Cpha266_0995 membrane protein of unknown function; hypothetical protein complement(1211305..1211646) Chlorobium limicola DSM 245 6355752 YP_001943159.1 CDS Clim_1111 NC_010803.1 1211723 1213096 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1211723..1213096) Chlorobium limicola DSM 245 6355753 YP_001943160.1 CDS Clim_1112 NC_010803.1 1213105 1213995 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1213105..1213995) Chlorobium limicola DSM 245 6355754 YP_001943161.1 CDS Clim_1113 NC_010803.1 1214186 1215148 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: plt:Plut_1144 alcohol dehydrogenase, zinc-containing; Alcohol dehydrogenase GroES domain-containing protein 1214186..1215148 Chlorobium limicola DSM 245 6355755 YP_001943162.1 CDS Clim_1114 NC_010803.1 1215159 1216241 D KEGG: pvi:Cvib_0811 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase 1215159..1216241 Chlorobium limicola DSM 245 6355756 YP_001943163.1 CDS Clim_1115 NC_010803.1 1216364 1216936 D KEGG: cch:Cag_0780 hypothetical protein; hypothetical protein 1216364..1216936 Chlorobium limicola DSM 245 6355757 YP_001943164.1 CDS Clim_1116 NC_010803.1 1216936 1218390 D TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: cph:Cpha266_1547 RNA polymerase, sigma 54 subunit, RpoN; RNA polymerase sigma-54 subunit RpoN 1216936..1218390 Chlorobium limicola DSM 245 6355758 YP_001943165.1 CDS Clim_1117 NC_010803.1 1218406 1218954 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1218406..1218954 Chlorobium limicola DSM 245 6355759 YP_001943166.1 CDS hslU NC_010803.1 1219015 1220487 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1219015..1220487 Chlorobium limicola DSM 245 6355760 YP_001943167.1 CDS Clim_1119 NC_010803.1 1220499 1220960 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1220499..1220960 Chlorobium limicola DSM 245 6355761 YP_001943168.1 CDS Clim_1120 NC_010803.1 1221106 1221612 R hypothetical protein complement(1221106..1221612) Chlorobium limicola DSM 245 6355762 YP_001943169.1 CDS Clim_1121 NC_010803.1 1221672 1224431 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bvu:BVU_1231 TonB-dependent outer membrane receptor protein; TonB-dependent receptor plug 1221672..1224431 Chlorobium limicola DSM 245 6355763 YP_001943170.1 CDS Clim_1122 NC_010803.1 1224512 1225570 D KEGG: fjo:Fjoh_1367 phytase; phytase 1224512..1225570 Chlorobium limicola DSM 245 6355764 YP_001943171.1 CDS Clim_1123 NC_010803.1 1225862 1227571 D PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: plt:Plut_1072 2-oxoacid:ferredoxin oxidoreductase, alpha subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 1225862..1227571 Chlorobium limicola DSM 245 6355765 YP_001943172.1 CDS Clim_1124 NC_010803.1 1227564 1228427 D TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: plt:Plut_1073 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate; pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta 1227564..1228427 Chlorobium limicola DSM 245 6355766 YP_001943173.1 CDS phhB NC_010803.1 1228477 1228818 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 1228477..1228818 Chlorobium limicola DSM 245 6355767 YP_001943174.1 CDS Clim_1126 NC_010803.1 1229513 1229728 D hypothetical protein 1229513..1229728 Chlorobium limicola DSM 245 6355768 YP_001943175.1 CDS Clim_1127 NC_010803.1 1229695 1229916 R KEGG: cte:CT1775 hypothetical protein; hypothetical protein complement(1229695..1229916) Chlorobium limicola DSM 245 6355769 YP_001943176.1 CDS Clim_1128 NC_010803.1 1229959 1230432 R PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: cte:CT1776 bacteriochlorophyll c3(1) hydratase; 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD complement(1229959..1230432) Chlorobium limicola DSM 245 6354834 YP_001943177.1 CDS Clim_1129 NC_010803.1 1230445 1230669 R hypothetical protein complement(1230445..1230669) Chlorobium limicola DSM 245 6353645 YP_001943178.1 CDS Clim_1130 NC_010803.1 1230719 1231213 R KEGG: cte:CT1002 hypothetical protein; transcriptional regulator complement(1230719..1231213) Chlorobium limicola DSM 245 6353646 YP_001943179.1 CDS Clim_1131 NC_010803.1 1231337 1231909 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cph:Cpha266_1068 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1231337..1231909 Chlorobium limicola DSM 245 6353647 YP_001943180.1 CDS Clim_1132 NC_010803.1 1232233 1232790 D TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: cte:CT0595 hypothetical protein; 2'-5' RNA ligase 1232233..1232790 Chlorobium limicola DSM 245 6353648 YP_001943181.1 CDS Clim_1133 NC_010803.1 1232818 1233264 D KEGG: cte:CT1238 hypothetical protein; hypothetical protein 1232818..1233264 Chlorobium limicola DSM 245 6353649 YP_001943182.1 CDS Clim_1134 NC_010803.1 1233725 1234894 D TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1066 geranylgeranyl reductase; geranylgeranyl reductase 1233725..1234894 Chlorobium limicola DSM 245 6353650 YP_001943183.1 CDS Clim_1135 NC_010803.1 1235207 1235614 D hypothetical protein 1235207..1235614 Chlorobium limicola DSM 245 6353651 YP_001943184.1 CDS Clim_1136 NC_010803.1 1235817 1236173 R KEGG: bbr:BB1527 hypothetical protein; hypothetical protein complement(1235817..1236173) Chlorobium limicola DSM 245 6353652 YP_001943185.1 CDS Clim_1137 NC_010803.1 1236480 1237250 R KEGG: cph:Cpha266_1424 nitroreductase; nitroreductase complement(1236480..1237250) Chlorobium limicola DSM 245 6353653 YP_001943186.1 CDS Clim_1138 NC_010803.1 1237251 1237673 R PFAM: NUDIX hydrolase; KEGG: plt:Plut_1259 hypothetical protein; NUDIX hydrolase complement(1237251..1237673) Chlorobium limicola DSM 245 6353654 YP_001943187.1 CDS Clim_1139 NC_010803.1 1237971 1238504 D KEGG: cph:Cpha266_1686 hypothetical protein; hypothetical protein 1237971..1238504 Chlorobium limicola DSM 245 6353655 YP_001943188.1 CDS Clim_1140 NC_010803.1 1238585 1238809 R KEGG: cph:Cpha266_1681 hypothetical protein; hypothetical protein complement(1238585..1238809) Chlorobium limicola DSM 245 6353656 YP_001943189.1 CDS Clim_1141 NC_010803.1 1238997 1239413 R KEGG: cph:Cpha266_1976 hypothetical protein; hypothetical protein complement(1238997..1239413) Chlorobium limicola DSM 245 6353657 YP_001943190.1 CDS Clim_1142 NC_010803.1 1239600 1241102 D KEGG: cph:Cpha266_1680 Pep581 peptidase. Metallo peptidase. MEROPS family M20C; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase 1239600..1241102 Chlorobium limicola DSM 245 6353658 YP_001943191.1 CDS Clim_1143 NC_010803.1 1241074 1241373 R KEGG: plt:Plut_0470 hypothetical protein; hypothetical protein complement(1241074..1241373) Chlorobium limicola DSM 245 6353659 YP_001943192.1 CDS mgsA NC_010803.1 1241373 1241840 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(1241373..1241840) Chlorobium limicola DSM 245 6353660 YP_001943193.1 CDS Clim_1145 NC_010803.1 1241978 1243399 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cph:Cpha266_1773 hypothetical protein; endonuclease/exonuclease/phosphatase 1241978..1243399 Chlorobium limicola DSM 245 6353661 YP_001943194.1 CDS Clim_1146 NC_010803.1 1243567 1244142 D PFAM: protein of unknown function DUF134; KEGG: plt:Plut_0906 hypothetical protein; hypothetical protein 1243567..1244142 Chlorobium limicola DSM 245 6353662 YP_001943195.1 CDS Clim_1147 NC_010803.1 1244161 1244529 D PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: cph:Cpha266_1457 dinitrogenase iron-molybdenum cofactor biosynthesis; dinitrogenase iron-molybdenum cofactor biosynthesis protein 1244161..1244529 Chlorobium limicola DSM 245 6353663 YP_001943196.1 CDS Clim_1148 NC_010803.1 1244650 1245651 R TIGRFAM: methyltransferase; KEGG: bpd:BURPS668_A1051 IMP dehydrogenase/GMP reductase; methyltransferase complement(1244650..1245651) Chlorobium limicola DSM 245 6353664 YP_001943197.1 CDS Clim_1149 NC_010803.1 1245844 1247217 R PFAM: Rhodanese domain protein; KEGG: sru:SRU_0931 thiosulfate sulfurtransferase; rhodanese domain-containing protein complement(1245844..1247217) Chlorobium limicola DSM 245 6353665 YP_001943198.1 CDS Clim_1150 NC_010803.1 1247316 1248524 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cph:Cpha266_1977 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1247316..1248524 Chlorobium limicola DSM 245 6353666 YP_001943199.1 CDS Clim_1151 NC_010803.1 1248571 1249260 R TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: cph:Cpha266_1922 MIP family channel proteins; MIP family channel protein complement(1248571..1249260) Chlorobium limicola DSM 245 6353667 YP_001943200.1 CDS Clim_1152 NC_010803.1 1249480 1250280 R PFAM: zinc/iron permease; KEGG: cph:Cpha266_1456 zinc transporter ZupT; zinc transporter ZupT complement(1249480..1250280) Chlorobium limicola DSM 245 6353668 YP_001943201.1 CDS Clim_1153 NC_010803.1 1250430 1250984 R PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1454 conserved hypothetical protein 730; hypothetical protein complement(1250430..1250984) Chlorobium limicola DSM 245 6353669 YP_001943202.1 CDS Clim_1154 NC_010803.1 1250981 1251634 R PFAM: glycosyl transferase family 2; KEGG: cte:CT1271 glycosyl transferase; family 2 glycosyl transferase complement(1250981..1251634) Chlorobium limicola DSM 245 6353670 YP_001943203.1 CDS Clim_1155 NC_010803.1 1251631 1252761 R TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cph:Cpha266_1449 bacteriochlorophyll/chlorophyll a synthase; bacteriochlorophyll/chlorophyll a synthase complement(1251631..1252761) Chlorobium limicola DSM 245 6353671 YP_001943204.1 CDS Clim_1156 NC_010803.1 1252848 1253000 D hypothetical protein 1252848..1253000 Chlorobium limicola DSM 245 6353672 YP_001943205.1 CDS Clim_1157 NC_010803.1 1253124 1253597 D KEGG: pvi:Cvib_0746 hypothetical protein; hypothetical protein 1253124..1253597 Chlorobium limicola DSM 245 6353673 YP_001943206.1 CDS Clim_1158 NC_010803.1 1253610 1254101 D PFAM: GCN5-related N-acetyltransferase; KEGG: plt:Plut_0913 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1253610..1254101 Chlorobium limicola DSM 245 6353674 YP_001943207.1 CDS Clim_1159 NC_010803.1 1254242 1254529 D hypothetical protein 1254242..1254529 Chlorobium limicola DSM 245 6353675 YP_001943208.1 CDS Clim_1160 NC_010803.1 1254564 1255187 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cph:Cpha266_1421 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 1254564..1255187 Chlorobium limicola DSM 245 6353676 YP_001943209.1 CDS Clim_1161 NC_010803.1 1255256 1256380 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bba:Bd2628 hypothetical protein; Rieske (2Fe-2S) domain-containing protein 1255256..1256380 Chlorobium limicola DSM 245 6353677 YP_001943210.1 CDS Clim_1163 NC_010803.1 1257896 1258084 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_1216 ferredoxin, 4Fe-4S; 4Fe-4S ferredoxin complement(1257896..1258084) Chlorobium limicola DSM 245 6353679 YP_001943211.1 CDS Clim_1164 NC_010803.1 1258199 1259644 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pvi:Cvib_0369 radical SAM domain protein; radical SAM protein complement(1258199..1259644) Chlorobium limicola DSM 245 6353680 YP_001943212.1 CDS Clim_1165 NC_010803.1 1259905 1260093 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pvi:Cvib_0750 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1259905..1260093) Chlorobium limicola DSM 245 6353681 YP_001943213.1 CDS Clim_1166 NC_010803.1 1260204 1261163 R PFAM: PhoH family protein; KEGG: cph:Cpha266_1415 PhoH family protein; PhoH family protein complement(1260204..1261163) Chlorobium limicola DSM 245 6353682 YP_001943214.1 CDS Clim_1167 NC_010803.1 1261160 1262176 R TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: cch:Cag_1084 ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase complement(1261160..1262176) Chlorobium limicola DSM 245 6353683 YP_001943215.1 CDS Clim_1168 NC_010803.1 1262287 1262709 R KEGG: cph:Cpha266_1413 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit complement(1262287..1262709) Chlorobium limicola DSM 245 6353684 YP_001943216.1 CDS Clim_1169 NC_010803.1 1262890 1263957 D TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: cph:Cpha266_1412 histidinol phosphate aminotransferase; histidinol-phosphate aminotransferase 1262890..1263957 Chlorobium limicola DSM 245 6353685 YP_001943217.1 CDS Clim_1170 NC_010803.1 1263959 1264498 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cph:Cpha266_1411 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 1263959..1264498 Chlorobium limicola DSM 245 6353686 YP_001943218.1 CDS Clim_1171 NC_010803.1 1264562 1265398 D PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_1410 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1264562..1265398 Chlorobium limicola DSM 245 6353687 YP_001943219.1 CDS Clim_1172 NC_010803.1 1265395 1265967 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(1265395..1265967) Chlorobium limicola DSM 245 6353688 YP_001943220.1 CDS hppA NC_010803.1 1266066 1268150 R pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase complement(1266066..1268150) Chlorobium limicola DSM 245 6353689 YP_001943221.1 CDS hppA NC_010803.1 1268585 1271005 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1268585..1271005 Chlorobium limicola DSM 245 6353690 YP_001943222.1 CDS Clim_1175 NC_010803.1 1271107 1271430 D KEGG: cph:Cpha266_1023 mitomycin resistance protein; mitomycin resistance protein 1271107..1271430 Chlorobium limicola DSM 245 6353691 YP_001943223.1 CDS Clim_1176 NC_010803.1 1271427 1272365 D PFAM: Domain of unknown function DUF1848; KEGG: cph:Cpha266_1022 hypothetical protein; hypothetical protein 1271427..1272365 Chlorobium limicola DSM 245 6353692 YP_001943224.1 CDS Clim_1177 NC_010803.1 1272619 1272831 D KEGG: ppg:PputGB1_4162 hypothetical protein; hypothetical protein 1272619..1272831 Chlorobium limicola DSM 245 6353693 YP_001943225.1 CDS Clim_1178 NC_010803.1 1272862 1273137 R PFAM: protein of unknown function DUF156; KEGG: pap:PSPA7_4093 hypothetical protein; hypothetical protein complement(1272862..1273137) Chlorobium limicola DSM 245 6353694 YP_001943226.1 CDS Clim_1179 NC_010803.1 1273215 1274138 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ppf:Pput_4528 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 1273215..1274138 Chlorobium limicola DSM 245 6353695 YP_001943227.1 CDS Clim_1180 NC_010803.1 1274292 1275335 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cph:Cpha266_1021 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(1274292..1275335) Chlorobium limicola DSM 245 6353696 YP_001943228.1 CDS Clim_1181 NC_010803.1 1275447 1275875 D KEGG: cph:Cpha266_1020 hypothetical protein; hypothetical protein 1275447..1275875 Chlorobium limicola DSM 245 6353697 YP_001943229.1 CDS Clim_1182 NC_010803.1 1275911 1276621 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1275911..1276621 Chlorobium limicola DSM 245 6353698 YP_001943230.1 CDS Clim_1183 NC_010803.1 1276654 1277298 D PFAM: SNARE associated Golgi protein; KEGG: cph:Cpha266_1018 DedA family protein; hypothetical protein 1276654..1277298 Chlorobium limicola DSM 245 6353699 YP_001943231.1 CDS Clim_1184 NC_010803.1 1277384 1278301 D PFAM: transketolase; KEGG: cph:Cpha266_1017 transketolase subunit A; transketolase 1277384..1278301 Chlorobium limicola DSM 245 6353700 YP_001943232.1 CDS Clim_1185 NC_010803.1 1278310 1278861 D PFAM: Protein of unknown function methylase KEGG: cph:Cpha266_1016 conserved hypothetical protein 95; hypothetical protein 1278310..1278861 Chlorobium limicola DSM 245 6353701 YP_001943233.1 CDS coaD NC_010803.1 1278858 1279370 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1278858..1279370 Chlorobium limicola DSM 245 6353702 YP_001943234.1 CDS Clim_1187 NC_010803.1 1279374 1280582 D PFAM: aminotransferase class V; aminotransferase class I and II; KEGG: cph:Cpha266_1014 aminotransferase; class I and II aminotransferase 1279374..1280582 Chlorobium limicola DSM 245 6353703 YP_001943235.1 CDS Clim_1188 NC_010803.1 1280592 1281353 D PFAM: phospholipid/glycerol acyltransferase; KEGG: cte:CT0967 hypothetical protein; phospholipid/glycerol acyltransferase 1280592..1281353 Chlorobium limicola DSM 245 6353704 YP_001943236.1 CDS Clim_1189 NC_010803.1 1281427 1282407 D PFAM: PSP1 domain protein; KEGG: cph:Cpha266_1012 PSP1 domain protein; PSP1 domain-containing protein 1281427..1282407 Chlorobium limicola DSM 245 6353705 YP_001943237.1 CDS metG NC_010803.1 1282497 1284605 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1282497..1284605 Chlorobium limicola DSM 245 6353706 YP_001943238.1 CDS Clim_1192 NC_010803.1 1285994 1286446 R KEGG: pvi:Cvib_0835 hypothetical protein; hypothetical protein complement(1285994..1286446) Chlorobium limicola DSM 245 6353709 YP_001943239.1 CDS Clim_1193 NC_010803.1 1286571 1287398 R PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: cph:Cpha266_1254 peptidase C14, caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 complement(1286571..1287398) Chlorobium limicola DSM 245 6353710 YP_001943240.1 CDS Clim_1194 NC_010803.1 1287648 1289276 D KEGG: cph:Cpha266_1255 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 1287648..1289276 Chlorobium limicola DSM 245 6353711 YP_001943241.1 CDS Clim_1195 NC_010803.1 1289371 1289799 D hypothetical protein 1289371..1289799 Chlorobium limicola DSM 245 6353712 YP_001943242.1 CDS Clim_1196 NC_010803.1 1289882 1290748 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cch:Cag_1033 hydrogenase/sulfur reductase, gamma subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(1289882..1290748) Chlorobium limicola DSM 245 6353713 YP_001943243.1 CDS Clim_1197 NC_010803.1 1290745 1291758 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_1257 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1290745..1291758) Chlorobium limicola DSM 245 6353714 YP_001943244.1 CDS Clim_1198 NC_010803.1 1291768 1292601 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_1258 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1291768..1292601) Chlorobium limicola DSM 245 6353715 YP_001943245.1 CDS Clim_1199 NC_010803.1 1292617 1293066 R PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: cph:Cpha266_1259 methyl-viologen-reducing hydrogenase, delta subunit; methyl-viologen-reducing hydrogenase subunit delta complement(1292617..1293066) Chlorobium limicola DSM 245 6353716 YP_001943246.1 CDS Clim_1200 NC_010803.1 1293100 1295070 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_1260 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1293100..1295070) Chlorobium limicola DSM 245 6353717 YP_001943247.1 CDS Clim_1201 NC_010803.1 1295359 1296885 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: cph:Cpha266_1261 CoB--CoM heterodisulfide reductase; CoB--CoM heterodisulfide reductase complement(1295359..1296885) Chlorobium limicola DSM 245 6353718 YP_001943248.1 CDS mscL NC_010803.1 1297093 1297545 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 1297093..1297545 Chlorobium limicola DSM 245 6353719 YP_001943249.1 CDS Clim_1203 NC_010803.1 1297637 1298848 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1297637..1298848 Chlorobium limicola DSM 245 6353720 YP_001943250.1 CDS Clim_1204 NC_010803.1 1298908 1300479 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: cph:Cpha266_1264 carbohydrate kinase, YjeF related protein; carbohydrate kinase complement(1298908..1300479) Chlorobium limicola DSM 245 6353721 YP_001943251.1 CDS Clim_1205 NC_010803.1 1300587 1302899 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II complement(1300587..1302899) Chlorobium limicola DSM 245 6353722 YP_001943252.1 CDS secA NC_010803.1 1302896 1305979 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(1302896..1305979) Chlorobium limicola DSM 245 6353723 YP_001943253.1 CDS Clim_1207 NC_010803.1 1306163 1306339 R hypothetical protein complement(1306163..1306339) Chlorobium limicola DSM 245 6355308 YP_001943254.1 CDS Clim_1208 NC_010803.1 1306620 1307558 R PFAM: 8-oxoguanine DNA glycosylase domain protein; SMART: HhH-GPD family protein; KEGG: cte:CT0996 8-oxoguanine DNA glycosylase; 8-oxoguanine DNA glycosylase complement(1306620..1307558) Chlorobium limicola DSM 245 6355309 YP_001943255.1 CDS Clim_1209 NC_010803.1 1307856 1308092 R hypothetical protein complement(1307856..1308092) Chlorobium limicola DSM 245 6355310 YP_001943256.1 CDS Clim_1210 NC_010803.1 1308202 1308393 D hypothetical protein 1308202..1308393 Chlorobium limicola DSM 245 6355311 YP_001943257.1 CDS Clim_1211 NC_010803.1 1308470 1309165 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: cch:Cag_1016 hypothetical protein; NAD-dependent epimerase/dehydratase complement(1308470..1309165) Chlorobium limicola DSM 245 6355312 YP_001943258.1 CDS Clim_1212 NC_010803.1 1309171 1309731 R KEGG: pvi:Cvib_0856 hypothetical protein; hypothetical protein complement(1309171..1309731) Chlorobium limicola DSM 245 6355313 YP_001943259.1 CDS Clim_1213 NC_010803.1 1309800 1310678 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(1309800..1310678) Chlorobium limicola DSM 245 6355314 YP_001943260.1 CDS Clim_1214 NC_010803.1 1310900 1311160 R KEGG: cph:Cpha266_1568 hypothetical protein; hypothetical protein complement(1310900..1311160) Chlorobium limicola DSM 245 6355315 YP_001943261.1 CDS Clim_1215 NC_010803.1 1311465 1312262 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: pvi:Cvib_0632 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 1311465..1312262 Chlorobium limicola DSM 245 6355316 YP_001943262.1 CDS Clim_1216 NC_010803.1 1312500 1313702 D KEGG: cph:Cpha266_1248 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA 1312500..1313702 Chlorobium limicola DSM 245 6355317 YP_001943263.1 CDS Clim_1217 NC_010803.1 1314102 1316126 D KEGG: cph:Cpha266_1304 C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 1314102..1316126 Chlorobium limicola DSM 245 6355318 YP_001943264.1 CDS Clim_1218 NC_010803.1 1316287 1317216 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: cph:Cpha266_1207 Na+/Ca+ antiporter, CaCA family; CaCA family Na+/Ca+ antiporter 1316287..1317216 Chlorobium limicola DSM 245 6355319 YP_001943265.1 CDS Clim_1219 NC_010803.1 1317563 1317832 D TIGRFAM: AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain protein; KEGG: cch:Cag_1078 AbrB family transcriptional regulator; AbrB family transcriptional regulator 1317563..1317832 Chlorobium limicola DSM 245 6355320 YP_001943266.1 CDS Clim_1220 NC_010803.1 1318213 1318407 D hypothetical protein 1318213..1318407 Chlorobium limicola DSM 245 6355321 YP_001943267.1 CDS Clim_1221 NC_010803.1 1318614 1319351 D KEGG: sbl:Sbal_0943 hypothetical protein; hypothetical protein 1318614..1319351 Chlorobium limicola DSM 245 6355322 YP_001943268.1 CDS Clim_1222 NC_010803.1 1319387 1319590 D KEGG: cph:Cpha266_1691 hypothetical protein; hypothetical protein 1319387..1319590 Chlorobium limicola DSM 245 6355323 YP_001943269.1 CDS Clim_1223 NC_010803.1 1319791 1320291 D PFAM: protein of unknown function DUF1499; KEGG: cph:Cpha266_0483 protein of unknown function DUF1499; hypothetical protein 1319791..1320291 Chlorobium limicola DSM 245 6355324 YP_001943270.1 CDS Clim_1224 NC_010803.1 1320419 1321462 R KEGG: cph:Cpha266_1229 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase complement(1320419..1321462) Chlorobium limicola DSM 245 6355325 YP_001943271.1 CDS Clim_1225 NC_010803.1 1321450 1322883 R KEGG: cph:Cpha266_1230 hypothetical protein; hypothetical protein complement(1321450..1322883) Chlorobium limicola DSM 245 6355326 YP_001943272.1 CDS Clim_1226 NC_010803.1 1323145 1323726 D hypothetical protein 1323145..1323726 Chlorobium limicola DSM 245 6355327 YP_001943273.1 CDS Clim_1227 NC_010803.1 1323786 1324433 D PFAM: protein of unknown function DUF477; KEGG: cch:Cag_1771 hypothetical protein; hypothetical protein 1323786..1324433 Chlorobium limicola DSM 245 6355328 YP_001943274.1 CDS Clim_1228 NC_010803.1 1324430 1325377 D PFAM: protein of unknown function DUF477; KEGG: lbi:LEPBI_I3031 hypothetical protein; hypothetical protein 1324430..1325377 Chlorobium limicola DSM 245 6355329 YP_001943275.1 CDS Clim_1229 NC_010803.1 1325601 1327238 D PFAM: ferredoxin-dependent glutamate synthase; Rieske [2Fe-2S] domain protein; KEGG: jan:Jann_3121 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 1325601..1327238 Chlorobium limicola DSM 245 6355330 YP_001943276.1 CDS Clim_1230 NC_010803.1 1327363 1328121 D PFAM: peptidase M50; KEGG: cph:Cpha266_1573 peptidase M50; peptidase M50 1327363..1328121 Chlorobium limicola DSM 245 6355331 YP_001943277.1 CDS Clim_1231 NC_010803.1 1328437 1330269 R PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: cph:Cpha266_1306 ATP citrate lyase subunit 2; ATP-citrate lyase/succinyl-CoA ligase complement(1328437..1330269) Chlorobium limicola DSM 245 6355332 YP_001943278.1 CDS Clim_1232 NC_010803.1 1330333 1331529 R PFAM: ATP-grasp domain protein; KEGG: cph:Cpha266_1307 ATP citrate lyase subunit 1; ATP-grasp domain-containing protein complement(1330333..1331529) Chlorobium limicola DSM 245 6355333 YP_001943279.1 CDS Clim_1233 NC_010803.1 1331666 1332526 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1331666..1332526 Chlorobium limicola DSM 245 6355334 YP_001943280.1 CDS Clim_1234 NC_010803.1 1332509 1333294 R PFAM: conserved hypothetical protein; KEGG: plt:Plut_1058 hypothetical protein; hypothetical protein complement(1332509..1333294) Chlorobium limicola DSM 245 6355335 YP_001943281.1 CDS Clim_1235 NC_010803.1 1333291 1333968 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: pvi:Cvib_0871 ABC transporter; ABC transporter complement(1333291..1333968) Chlorobium limicola DSM 245 6355336 YP_001943282.1 CDS Clim_1236 NC_010803.1 1334081 1336660 D KEGG: cte:CT1094 hypothetical protein; hypothetical protein 1334081..1336660 Chlorobium limicola DSM 245 6355337 YP_001943283.1 CDS Clim_1237 NC_010803.1 1336738 1337394 R PFAM: protein of unknown function UPF0016; KEGG: cph:Cpha266_1312 protein of unknown function UPF0016; hypothetical protein complement(1336738..1337394) Chlorobium limicola DSM 245 6355338 YP_001943284.1 CDS Clim_1238 NC_010803.1 1337569 1338108 R PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: cph:Cpha266_1313 lipocalin family protein; lipocalin family protein complement(1337569..1338108) Chlorobium limicola DSM 245 6355339 YP_001943285.1 CDS Clim_1239 NC_010803.1 1338219 1338680 D PFAM: GCN5-related N-acetyltransferase; KEGG: cph:Cpha266_1314 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1338219..1338680 Chlorobium limicola DSM 245 6355340 YP_001943286.1 CDS Clim_1240 NC_010803.1 1338698 1338865 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cph:Cpha266_1315 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 1338698..1338865 Chlorobium limicola DSM 245 6355341 YP_001943287.1 CDS Clim_1241 NC_010803.1 1339328 1340578 R PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1316 protein of unknown function DUF214; hypothetical protein complement(1339328..1340578) Chlorobium limicola DSM 245 6355342 YP_001943288.1 CDS Clim_1242 NC_010803.1 1340597 1341865 R PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1317 protein of unknown function DUF214; hypothetical protein complement(1340597..1341865) Chlorobium limicola DSM 245 6355343 YP_001943289.1 CDS Clim_1243 NC_010803.1 1341862 1343121 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: plt:Plut_1051 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(1341862..1343121) Chlorobium limicola DSM 245 6355344 YP_001943290.1 CDS Clim_1244 NC_010803.1 1343126 1344085 R KEGG: cph:Cpha266_1319 phosphate-binding protein; phosphate-binding protein complement(1343126..1344085) Chlorobium limicola DSM 245 6355345 YP_001943291.1 CDS argC NC_010803.1 1344377 1345414 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 1344377..1345414 Chlorobium limicola DSM 245 6355346 YP_001943292.1 CDS argJ NC_010803.1 1345438 1346724 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 1345438..1346724 Chlorobium limicola DSM 245 6355347 YP_001943293.1 CDS Clim_1247 NC_010803.1 1346768 1347682 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 1346768..1347682 Chlorobium limicola DSM 245 6355348 YP_001943294.1 CDS Clim_1248 NC_010803.1 1347689 1348705 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1347689..1348705 Chlorobium limicola DSM 245 6355349 YP_001943295.1 CDS Clim_1249 NC_010803.1 1348710 1349156 D PFAM: arginine repressor; KEGG: cph:Cpha266_1324 transcriptional regulator, ArgR family; arginine repressor ArgR 1348710..1349156 Chlorobium limicola DSM 245 6355350 YP_001943296.1 CDS Clim_1250 NC_010803.1 1349175 1350377 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1349175..1350377 Chlorobium limicola DSM 245 6355351 YP_001943297.1 CDS Clim_1251 NC_010803.1 1350487 1351878 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1350487..1351878 Chlorobium limicola DSM 245 6355352 YP_001943298.1 CDS Clim_1252 NC_010803.1 1351892 1353985 R KEGG: cph:Cpha266_1328 C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(1351892..1353985) Chlorobium limicola DSM 245 6355353 YP_001943299.1 CDS Clim_1253 NC_010803.1 1354123 1355097 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 1354123..1355097 Chlorobium limicola DSM 245 6355354 YP_001943300.1 CDS Clim_1254 NC_010803.1 1355185 1356399 R KEGG: cph:Cpha266_1330 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(1355185..1356399) Chlorobium limicola DSM 245 6355355 YP_001943301.1 CDS Clim_1255 NC_010803.1 1356760 1357488 D PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: pvi:Cvib_0894 prophage repressor; XRE family transcriptional regulator 1356760..1357488 Chlorobium limicola DSM 245 6355356 YP_001943302.1 CDS Clim_1256 NC_010803.1 1357593 1358558 R PFAM: protein of unknown function DUF1568; KEGG: cph:Cpha266_1487 protein of unknown function DUF1568; hypothetical protein complement(1357593..1358558) Chlorobium limicola DSM 245 6355357 YP_001943303.1 CDS Clim_1257 NC_010803.1 1358662 1359354 R PFAM: CBS domain containing protein; KEGG: cph:Cpha266_1331 CBS domain containing protein; signal transduction protein with CBS domains complement(1358662..1359354) Chlorobium limicola DSM 245 6355358 YP_001943304.1 CDS Clim_1258 NC_010803.1 1359345 1359779 R KEGG: cph:Cpha266_1332 ribose-5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase complement(1359345..1359779) Chlorobium limicola DSM 245 6355359 YP_001943305.1 CDS Clim_1259 NC_010803.1 1359776 1361917 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(1359776..1361917) Chlorobium limicola DSM 245 6355360 YP_001943306.1 CDS Clim_1260 NC_010803.1 1361932 1362519 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cph:Cpha266_1334 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(1361932..1362519) Chlorobium limicola DSM 245 6355361 YP_001943307.1 CDS Clim_1261 NC_010803.1 1362697 1363437 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: cph:Cpha266_1335 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 1362697..1363437 Chlorobium limicola DSM 245 6355362 YP_001943308.1 CDS pyrC NC_010803.1 1363484 1364806 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1363484..1364806 Chlorobium limicola DSM 245 6355363 YP_001943309.1 CDS Clim_1263 NC_010803.1 1364922 1365116 D KEGG: cph:Cpha266_1337 hypothetical protein; hypothetical protein 1364922..1365116 Chlorobium limicola DSM 245 6355364 YP_001943310.1 CDS Clim_1264 NC_010803.1 1365191 1365979 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: plt:Plut_1011 methyltransferase; type 11 methyltransferase 1365191..1365979 Chlorobium limicola DSM 245 6355365 YP_001943311.1 CDS Clim_1265 NC_010803.1 1365994 1366611 R KEGG: pvi:Cvib_0903 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(1365994..1366611) Chlorobium limicola DSM 245 6355366 YP_001943312.1 CDS Clim_1266 NC_010803.1 1366685 1368634 R PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase KEGG: pvi:Cvib_0904 cyclic nucleotide-binding protein; CBS domain and cyclic nucleotide-regulated nucleotidyltransferase complement(1366685..1368634) Chlorobium limicola DSM 245 6355367 YP_001943313.1 CDS Clim_1267 NC_010803.1 1368747 1369739 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cph:Cpha266_1339 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1368747..1369739) Chlorobium limicola DSM 245 6355368 YP_001943314.1 CDS Clim_1268 NC_010803.1 1369806 1370831 R PFAM: basic membrane lipoprotein; KEGG: cph:Cpha266_1340 basic membrane lipoprotein; basic membrane lipoprotein complement(1369806..1370831) Chlorobium limicola DSM 245 6355369 YP_001943315.1 CDS Clim_1269 NC_010803.1 1371062 1372729 D PFAM: CHAD domain containing protein; KEGG: cph:Cpha266_1341 CHAD domain containing protein; CHAD domain-containing protein 1371062..1372729 Chlorobium limicola DSM 245 6355370 YP_001943316.1 CDS Clim_1270 NC_010803.1 1372736 1373485 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cph:Cpha266_1342 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 1372736..1373485 Chlorobium limicola DSM 245 6355371 YP_001943317.1 CDS Clim_1271 NC_010803.1 1373703 1374512 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cch:Cag_0383 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(1373703..1374512) Chlorobium limicola DSM 245 6355372 YP_001943318.1 CDS Clim_1272 NC_010803.1 1374518 1375168 R PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: cph:Cpha266_1343 peptidase M15D, VanX D-ala-D-ala dipeptidase; peptidase M15D vanX D-ala-D-ala dipeptidase complement(1374518..1375168) Chlorobium limicola DSM 245 6355373 YP_001943319.1 CDS Clim_1273 NC_010803.1 1375177 1375791 R TIGRFAM: yecA family protein; KEGG: cph:Cpha266_0914 YecA family protein; yecA family protein complement(1375177..1375791) Chlorobium limicola DSM 245 6355374 YP_001943320.1 CDS Clim_1274 NC_010803.1 1376159 1376782 D PFAM: NLP/P60 protein; KEGG: plt:Plut_0897 NLP/P60 family protein; NLP/P60 protein 1376159..1376782 Chlorobium limicola DSM 245 6355375 YP_001943321.1 CDS Clim_1275 NC_010803.1 1376881 1377681 D KEGG: plt:Plut_1030 hypothetical protein; hypothetical protein 1376881..1377681 Chlorobium limicola DSM 245 6355376 YP_001943322.1 CDS Clim_1276 NC_010803.1 1377758 1378576 R PFAM: penicillin-binding protein transpeptidase; KEGG: psa:PST_2699 probable beta-lactamase; beta-lactamase complement(1377758..1378576) Chlorobium limicola DSM 245 6355377 YP_001943323.1 CDS Clim_1277 NC_010803.1 1378919 1379107 D KEGG: cch:Cag_0509 hypothetical protein; hypothetical protein 1378919..1379107 Chlorobium limicola DSM 245 6355378 YP_001943324.1 CDS Clim_1278 NC_010803.1 1379278 1379541 D KEGG: cph:Cpha266_2106 hypothetical protein; hypothetical protein 1379278..1379541 Chlorobium limicola DSM 245 6355379 YP_001943325.1 CDS Clim_1279 NC_010803.1 1379586 1380293 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ppd:Ppro_3713 ABC transporter; ABC transporter complement(1379586..1380293) Chlorobium limicola DSM 245 6355380 YP_001943326.1 CDS Clim_1280 NC_010803.1 1380295 1381488 R PFAM: protein of unknown function DUF214; KEGG: gsu:GSU0948 ABC transporter, permease protein; hypothetical protein complement(1380295..1381488) Chlorobium limicola DSM 245 6355381 YP_001943327.1 CDS Clim_1281 NC_010803.1 1381492 1382565 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: afw:Anae109_1045 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1381492..1382565) Chlorobium limicola DSM 245 6355382 YP_001943328.1 CDS Clim_1282 NC_010803.1 1382565 1383905 R PFAM: outer membrane efflux protein; KEGG: gme:Gmet_3465 outer membrane efflux protein; outer membrane efflux protein complement(1382565..1383905) Chlorobium limicola DSM 245 6355383 YP_001943329.1 CDS Clim_1283 NC_010803.1 1384011 1384610 D PFAM: regulatory protein TetR; KEGG: ppd:Ppro_3852 TetR family transcriptional regulator; TetR family transcriptional regulator 1384011..1384610 Chlorobium limicola DSM 245 6355384 YP_001943330.1 CDS Clim_1284 NC_010803.1 1384669 1385361 R KEGG: plt:Plut_2079 Fibrobacter succinogenes major paralogous domain; hypothetical protein complement(1384669..1385361) Chlorobium limicola DSM 245 6355385 YP_001943331.1 CDS Clim_1285 NC_010803.1 1385504 1385890 R KEGG: plt:Plut_0346 hypothetical protein; hypothetical protein complement(1385504..1385890) Chlorobium limicola DSM 245 6355386 YP_001943332.1 CDS Clim_1286 NC_010803.1 1385972 1386274 R KEGG: plt:Plut_0345 hypothetical protein; hypothetical protein complement(1385972..1386274) Chlorobium limicola DSM 245 6355387 YP_001943333.1 CDS Clim_1287 NC_010803.1 1386526 1387884 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: plt:Plut_0344 two component transcriptional regulator, fis family; two component sigma-54 specific Fis family transcriptional regulator complement(1386526..1387884) Chlorobium limicola DSM 245 6355388 YP_001943334.1 CDS Clim_1288 NC_010803.1 1387928 1389967 R KEGG: plt:Plut_0343 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB complement(1387928..1389967) Chlorobium limicola DSM 245 6356214 YP_001943335.1 CDS Clim_1289 NC_010803.1 1390090 1390509 R PFAM: cytochrome c class I; KEGG: cph:Cpha266_0171 C-type cytochrome; cytochrome c class I complement(1390090..1390509) Chlorobium limicola DSM 245 6356215 YP_001943336.1 CDS Clim_1290 NC_010803.1 1390903 1391457 D KEGG: cch:Cag_0441 hypothetical protein; hypothetical protein 1390903..1391457 Chlorobium limicola DSM 245 6356216 YP_001943337.1 CDS Clim_1291 NC_010803.1 1391472 1392140 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cph:Cpha266_1205 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 1391472..1392140 Chlorobium limicola DSM 245 6356217 YP_001943338.1 CDS Clim_1292 NC_010803.1 1392141 1393628 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cch:Cag_0439 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1392141..1393628 Chlorobium limicola DSM 245 6356218 YP_001943339.1 CDS Clim_1293 NC_010803.1 1393669 1395279 D KEGG: ter:Tery_2635 hypothetical protein; hypothetical protein 1393669..1395279 Chlorobium limicola DSM 245 6356219 YP_001943340.1 CDS Clim_1294 NC_010803.1 1395439 1396359 R PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region; integrase catalytic subunit complement(1395439..1396359) Chlorobium limicola DSM 245 6356220 YP_001943341.1 CDS Clim_1295 NC_010803.1 1396356 1396649 R PFAM: transposase IS3/IS911 family protein; KEGG: cph:Cpha266_2113 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(1396356..1396649) Chlorobium limicola DSM 245 6356221 YP_001943342.1 CDS Clim_1297 NC_010803.1 1397247 1398086 D KEGG: cch:Cag_1146 hypothetical protein; hypothetical protein 1397247..1398086 Chlorobium limicola DSM 245 6355389 YP_001943343.1 CDS Clim_1298 NC_010803.1 1398083 1398529 R KEGG: pna:Pnap_4508 hypothetical protein; hypothetical protein complement(1398083..1398529) Chlorobium limicola DSM 245 6354491 YP_001943344.1 CDS Clim_1299 NC_010803.1 1398995 1399294 R PFAM: plasmid stabilization system; KEGG: gvi:gsr3505 hypothetical protein; plasmid stabilization system complement(1398995..1399294) Chlorobium limicola DSM 245 6354492 YP_001943345.1 CDS Clim_1300 NC_010803.1 1399308 1399559 R TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: gvi:gsr2534 hypothetical protein; CopG/Arc/MetJ family addiction module antidote protein complement(1399308..1399559) Chlorobium limicola DSM 245 6354493 YP_001943346.1 CDS Clim_1301 NC_010803.1 1399753 1400097 R hypothetical protein complement(1399753..1400097) Chlorobium limicola DSM 245 6354494 YP_001943347.1 CDS Clim_1302 NC_010803.1 1400183 1400521 D TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: dde:Dde_0501 hypothetical protein; addiction module killer protein 1400183..1400521 Chlorobium limicola DSM 245 6354495 YP_001943348.1 CDS Clim_1303 NC_010803.1 1400493 1400783 D TIGRFAM: addiction module antidote protein; KEGG: pvi:Cvib_0663 transcriptional regulator; transcriptional regulator 1400493..1400783 Chlorobium limicola DSM 245 6354496 YP_001943349.1 CDS Clim_1304 NC_010803.1 1400925 1401701 R PFAM: Integrase catalytic region; KEGG: cph:Cpha266_2112 integrase, catalytic region; integrase catalytic subunit complement(1400925..1401701) Chlorobium limicola DSM 245 6354497 YP_001943350.1 CDS Clim_1305 NC_010803.1 1401698 1401991 R PFAM: transposase IS3/IS911 family protein; KEGG: cph:Cpha266_2113 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(1401698..1401991) Chlorobium limicola DSM 245 6354498 YP_001943351.1 CDS Clim_1306 NC_010803.1 1402244 1406713 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; Haemagluttinin repeat-containing protein; KEGG: cph:Cpha266_1203 outer membrane autotransporter barrel domain; outer membrane autotransporter barrel domain-containing protein 1402244..1406713 Chlorobium limicola DSM 245 6354499 YP_001943352.1 CDS Clim_1307 NC_010803.1 1407084 1408130 D KEGG: cph:Cpha266_2139 transposase and inactivated derivatives; transposase and inactivated derivatives 1407084..1408130 Chlorobium limicola DSM 245 6354500 YP_001943353.1 CDS Clim_1308 NC_010803.1 1408800 1409726 D PFAM: Haemagluttinin domain protein; KEGG: rsp:RSP_4120 hypothetical protein; hemagglutinin domain-containing protein 1408800..1409726 Chlorobium limicola DSM 245 6354501 YP_001943354.1 CDS Clim_1309 NC_010803.1 1409851 1410318 D KEGG: ppd:Ppro_3601 transposase, IS4 family protein; transposase, IS4 family protein 1409851..1410318 Chlorobium limicola DSM 245 6354502 YP_001943355.1 CDS Clim_1310 NC_010803.1 1410414 1411439 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: hip:CGSHiEE_05405 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 1410414..1411439 Chlorobium limicola DSM 245 6354503 YP_001943356.1 CDS Clim_1311 NC_010803.1 1411571 1412560 R KEGG: cph:Cpha266_1005 hypothetical protein; hypothetical protein complement(1411571..1412560) Chlorobium limicola DSM 245 6354504 YP_001943357.1 CDS Clim_1312 NC_010803.1 1412882 1414759 R PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: cte:CT1075 thiol:disulfide interchange protein DsbD; Protein-disulfide reductase complement(1412882..1414759) Chlorobium limicola DSM 245 6354505 YP_001943358.1 CDS Clim_1313 NC_010803.1 1414767 1415315 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cph:Cpha266_0469 redoxin domain protein; redoxin domain-containing protein complement(1414767..1415315) Chlorobium limicola DSM 245 6354506 YP_001943359.1 CDS Clim_1314 NC_010803.1 1415411 1415911 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: cph:Cpha266_1350 cupin 2, conserved barrel domain protein; cupin complement(1415411..1415911) Chlorobium limicola DSM 245 6354507 YP_001943360.1 CDS Clim_1315 NC_010803.1 1416028 1419699 R PFAM: SMC domain protein; KEGG: cph:Cpha266_1354 SMC domain protein; SMC domain-containing protein complement(1416028..1419699) Chlorobium limicola DSM 245 6354508 YP_001943361.1 CDS Clim_1316 NC_010803.1 1419863 1421008 R PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: plt:Plut_0896 malate dehydrogenase (oxaloacetate decarboxylating); malate dehydrogenase complement(1419863..1421008) Chlorobium limicola DSM 245 6354509 YP_001943362.1 CDS Clim_1317 NC_010803.1 1421554 1421775 R KEGG: cph:Cpha266_2432 hypothetical protein; hypothetical protein complement(1421554..1421775) Chlorobium limicola DSM 245 6354510 YP_001943363.1 CDS Clim_1318 NC_010803.1 1421838 1422836 R KEGG: cph:Cpha266_2433 hypothetical protein; hypothetical protein complement(1421838..1422836) Chlorobium limicola DSM 245 6354511 YP_001943364.1 CDS Clim_1319 NC_010803.1 1422965 1424200 R TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: cph:Cpha266_1371 exodeoxyribonuclease I subunit D; nuclease SbcCD subunit D complement(1422965..1424200) Chlorobium limicola DSM 245 6354512 YP_001943365.1 CDS Clim_1320 NC_010803.1 1424202 1425074 R PFAM: Ion transport 2 domain protein; KEGG: cph:Cpha266_1372 ion transport 2 domain protein; Ion transport 2 domain-containing protein complement(1424202..1425074) Chlorobium limicola DSM 245 6354513 YP_001943366.1 CDS Clim_1321 NC_010803.1 1425190 1425387 R hypothetical protein complement(1425190..1425387) Chlorobium limicola DSM 245 6354514 YP_001943367.1 CDS Clim_1322 NC_010803.1 1425897 1426622 R KEGG: hne:HNE_3258 lipoprotein; hypothetical protein complement(1425897..1426622) Chlorobium limicola DSM 245 6354515 YP_001943368.1 CDS Clim_1323 NC_010803.1 1426744 1427211 R KEGG: cte:CT1238 hypothetical protein; hypothetical protein complement(1426744..1427211) Chlorobium limicola DSM 245 6354516 YP_001943369.1 CDS Clim_1324 NC_010803.1 1427679 1430054 R PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: cte:CT1524 phosphoketolase; phosphoketolase complement(1427679..1430054) Chlorobium limicola DSM 245 6354517 YP_001943370.1 CDS Clim_1325 NC_010803.1 1430156 1431349 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: cte:CT1525 acetate kinase; acetate kinase complement(1430156..1431349) Chlorobium limicola DSM 245 6354518 YP_001943371.1 CDS Clim_1326 NC_010803.1 1431720 1431962 D KEGG: cph:Cpha266_1379 CopG family transcriptional regulator; CopG family transcriptional regulator 1431720..1431962 Chlorobium limicola DSM 245 6354519 YP_001943372.1 CDS Clim_1327 NC_010803.1 1431947 1432165 D KEGG: cph:Cpha266_1380 MazF family transcriptional regulator; MazF family transcriptional regulator 1431947..1432165 Chlorobium limicola DSM 245 6354520 YP_001943373.1 CDS Clim_1330 NC_010803.1 1432804 1435365 D TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: lbl:LBL_0797 membrane alanyl aminopeptidase; aminopeptidase N 1432804..1435365 Chlorobium limicola DSM 245 6354523 YP_001943374.1 CDS Clim_1333 NC_010803.1 1435835 1436098 D KEGG: ppd:Ppro_3838 hypothetical protein; hypothetical protein 1435835..1436098 Chlorobium limicola DSM 245 6354526 YP_001943375.1 CDS Clim_1334 NC_010803.1 1436188 1436400 D KEGG: cph:Cpha266_1481 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 1436188..1436400 Chlorobium limicola DSM 245 6354527 YP_001943376.1 CDS Clim_1335 NC_010803.1 1436397 1436660 D hypothetical protein 1436397..1436660 Chlorobium limicola DSM 245 6354528 YP_001943377.1 CDS Clim_1336 NC_010803.1 1436612 1436920 D KEGG: aba:Acid345_4147 hypothetical protein; hypothetical protein 1436612..1436920 Chlorobium limicola DSM 245 6354529 YP_001943378.1 CDS Clim_1337 NC_010803.1 1436958 1437368 D PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_1375 XRE family transcriptional regulator; XRE family transcriptional regulator 1436958..1437368 Chlorobium limicola DSM 245 6354530 YP_001943379.1 CDS Clim_1338 NC_010803.1 1437546 1437806 R TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: cph:Cpha266_1376 addiction module toxin, RelE/StbE family; RelE/StbE family addiction module toxin complement(1437546..1437806) Chlorobium limicola DSM 245 6354531 YP_001943380.1 CDS Clim_1339 NC_010803.1 1437790 1438038 R PFAM: CopG domain protein DNA-binding domain protein; KEGG: cph:Cpha266_1377 CopG family transcriptional regulator; DNA-binding domain-containing protein complement(1437790..1438038) Chlorobium limicola DSM 245 6354532 YP_001943381.1 CDS Clim_1340 NC_010803.1 1438230 1438430 D KEGG: cph:Cpha266_1378 hypothetical protein; hypothetical protein 1438230..1438430 Chlorobium limicola DSM 245 6354533 YP_001943382.1 CDS Clim_1341 NC_010803.1 1438462 1438731 D KEGG: gur:Gura_3957 hypothetical protein; hypothetical protein 1438462..1438731 Chlorobium limicola DSM 245 6354534 YP_001943383.1 CDS Clim_1342 NC_010803.1 1438735 1438977 D KEGG: cph:Cpha266_1387 hypothetical protein; hypothetical protein 1438735..1438977 Chlorobium limicola DSM 245 6354535 YP_001943384.1 CDS Clim_1343 NC_010803.1 1439021 1439350 D KEGG: cph:Cpha266_1388 hypothetical protein; hypothetical protein 1439021..1439350 Chlorobium limicola DSM 245 6354536 YP_001943385.1 CDS Clim_1344 NC_010803.1 1439347 1439646 D PFAM: plasmid stabilization system; KEGG: cph:Cpha266_1389 plasmid stabilization system; plasmid stabilization system 1439347..1439646 Chlorobium limicola DSM 245 6354537 YP_001943386.1 CDS Clim_1345 NC_010803.1 1439785 1440018 R KEGG: cph:Cpha266_1390 MazF family transcriptional regulator; MazF family transcriptional regulator complement(1439785..1440018) Chlorobium limicola DSM 245 6354538 YP_001943387.1 CDS Clim_1346 NC_010803.1 1440117 1440329 R KEGG: cph:Cpha266_1391 hypothetical protein; hypothetical protein complement(1440117..1440329) Chlorobium limicola DSM 245 6354539 YP_001943388.1 CDS Clim_1347 NC_010803.1 1440927 1441169 D KEGG: cph:Cpha266_1379 CopG family transcriptional regulator; CopG family transcriptional regulator 1440927..1441169 Chlorobium limicola DSM 245 6354540 YP_001943389.1 CDS Clim_1348 NC_010803.1 1441154 1441492 D PFAM: PemK family protein; KEGG: cph:Cpha266_1380 MazF family transcriptional regulator; MazF family transcriptional regulator 1441154..1441492 Chlorobium limicola DSM 245 6354541 YP_001943390.1 CDS Clim_1349 NC_010803.1 1441537 1441785 R KEGG: cph:Cpha266_1392 protein of unknown function DUF1568; hypothetical protein complement(1441537..1441785) Chlorobium limicola DSM 245 6354542 YP_001943391.1 CDS Clim_1350 NC_010803.1 1441999 1444902 R PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cno:NT01CX_0321 helicase; type III restriction protein res subunit complement(1441999..1444902) Chlorobium limicola DSM 245 6354543 YP_001943392.1 CDS Clim_1352 NC_010803.1 1446298 1446603 D KEGG: cph:Cpha266_2634 transposase, IS4 family protein; transposase, IS4 family protein 1446298..1446603 Chlorobium limicola DSM 245 6354545 YP_001943393.1 CDS Clim_1353 NC_010803.1 1446600 1449194 R PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_1847 hypothetical protein; hypothetical protein complement(1446600..1449194) Chlorobium limicola DSM 245 6354546 YP_001943394.1 CDS Clim_1354 NC_010803.1 1449187 1450830 R KEGG: sse:Ssed_3658 nucleoside phosphorylase-like protein; Nucleoside phosphorylase-like protein complement(1449187..1450830) Chlorobium limicola DSM 245 6354547 YP_001943395.1 CDS Clim_1356 NC_010803.1 1451557 1452522 R PFAM: protein of unknown function DUF1568; KEGG: cph:Cpha266_2246 protein of unknown function DUF1568; hypothetical protein complement(1451557..1452522) Chlorobium limicola DSM 245 6354549 YP_001943396.1 CDS Clim_1357 NC_010803.1 1452644 1452736 R hypothetical protein complement(1452644..1452736) Chlorobium limicola DSM 245 6354550 YP_001943397.1 CDS Clim_1358 NC_010803.1 1452865 1454631 R TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: cph:Cpha266_1400 DNA helicase/exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha complement(1452865..1454631) Chlorobium limicola DSM 245 6354551 YP_001943398.1 CDS Clim_1359 NC_010803.1 1454628 1458308 R TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: cph:Cpha266_1401 DNA helicase/exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta complement(1454628..1458308) Chlorobium limicola DSM 245 6354552 YP_001943399.1 CDS Clim_1360 NC_010803.1 1458305 1461538 R TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: cph:Cpha266_1402 DNA helicase/exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma complement(1458305..1461538) Chlorobium limicola DSM 245 6353770 YP_001943400.1 CDS Clim_1361 NC_010803.1 1461535 1462053 R PFAM: membrane-flanked domain; KEGG: cph:Cpha266_1403 hypothetical protein; hypothetical protein complement(1461535..1462053) Chlorobium limicola DSM 245 6353771 YP_001943401.1 CDS Clim_1362 NC_010803.1 1462084 1463412 R PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1404 conserved hypothetical protein 341; hypothetical protein complement(1462084..1463412) Chlorobium limicola DSM 245 6353772 YP_001943402.1 CDS Clim_1363 NC_010803.1 1463530 1464804 D PFAM: proteinase inhibitor I4 serpin; KEGG: scl:sce2877 serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member; proteinase inhibitor I4 serpin 1463530..1464804 Chlorobium limicola DSM 245 6353773 YP_001943403.1 CDS Clim_1364 NC_010803.1 1464809 1466230 D PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: mgm:Mmc1_1145 deoxyribodipyrimidine photo-lyase; deoxyribodipyrimidine photo-lyase 1464809..1466230 Chlorobium limicola DSM 245 6353774 YP_001943404.1 CDS Clim_1365 NC_010803.1 1466287 1466559 D KEGG: plt:Plut_1000 hypothetical protein; transcriptional regulator 1466287..1466559 Chlorobium limicola DSM 245 6355629 YP_001943405.1 CDS Clim_1366 NC_010803.1 1466645 1468090 D KEGG: cph:Cpha266_1274 hypothetical protein; hypothetical protein 1466645..1468090 Chlorobium limicola DSM 245 6356135 YP_001943406.1 CDS Clim_1367 NC_010803.1 1468111 1468608 R PFAM: Protein of unknown function DUF1790; KEGG: pvi:Cvib_0087 hypothetical protein; hypothetical protein complement(1468111..1468608) Chlorobium limicola DSM 245 6356136 YP_001943407.1 CDS Clim_1368 NC_010803.1 1469030 1469338 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_1407 plasmid maintenance system antidote protein, XRE family; XRE family plasmid maintenance system antidote protein 1469030..1469338 Chlorobium limicola DSM 245 6356137 YP_001943408.1 CDS Clim_1369 NC_010803.1 1470075 1471301 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pvi:Cvib_0131 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1470075..1471301 Chlorobium limicola DSM 245 6356138 YP_001943409.1 CDS Clim_1370 NC_010803.1 1471328 1472620 R PFAM: protein of unknown function DUF195; KEGG: cph:Cpha266_1053 protein of unknown function DUF195; hypothetical protein complement(1471328..1472620) Chlorobium limicola DSM 245 6356139 YP_001943410.1 CDS Clim_1371 NC_010803.1 1473049 1474053 R this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein complement(1473049..1474053) Chlorobium limicola DSM 245 6356140 YP_001943411.1 CDS Clim_1372 NC_010803.1 1474219 1476339 D PFAM: protein of unknown function DUF255; KEGG: cph:Cpha266_1460 protein of unknown function DUF255; hypothetical protein 1474219..1476339 Chlorobium limicola DSM 245 6356141 YP_001943412.1 CDS Clim_1373 NC_010803.1 1476329 1476556 R KEGG: cph:Cpha266_1461 hypothetical protein; hypothetical protein complement(1476329..1476556) Chlorobium limicola DSM 245 6356142 YP_001943413.1 CDS Clim_1374 NC_010803.1 1476790 1477029 R KEGG: plt:Plut_0810 hypothetical protein; hypothetical protein complement(1476790..1477029) Chlorobium limicola DSM 245 6356144 YP_001943414.1 CDS Clim_1375 NC_010803.1 1477320 1478777 D PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: cph:Cpha266_1064 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase L chain ATP-binding 1477320..1478777 Chlorobium limicola DSM 245 6356145 YP_001943415.1 CDS Clim_1376 NC_010803.1 1478783 1480813 D PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; KEGG: cph:Cpha266_1063 biotin/lipoyl attachment domain-containing protein; Oxaloacetate decarboxylase 1478783..1480813 Chlorobium limicola DSM 245 6356146 YP_001943416.1 CDS sucA NC_010803.1 1481100 1483931 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1481100..1483931 Chlorobium limicola DSM 245 6356147 YP_001943417.1 CDS Clim_1378 NC_010803.1 1483941 1485188 D TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: reh:H16_A2324 dihydrolipoamide S-succinyltransferase (E2); 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 1483941..1485188 Chlorobium limicola DSM 245 6356148 YP_001943418.1 CDS Clim_1379 NC_010803.1 1485148 1486638 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rso:RSc1271 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 1485148..1486638 Chlorobium limicola DSM 245 6356149 YP_001943419.1 CDS Clim_1380 NC_010803.1 1486909 1487625 D PFAM: nuclease (SNase domain protein); KEGG: dol:Dole_2932 nuclease (SNase domain protein); nuclease 1486909..1487625 Chlorobium limicola DSM 245 6356150 YP_001943420.1 CDS Clim_1381 NC_010803.1 1487604 1487786 D hypothetical protein 1487604..1487786 Chlorobium limicola DSM 245 6356151 YP_001943421.1 CDS Clim_1382 NC_010803.1 1487792 1489030 R KEGG: hch:HCH_04190 hypothetical protein; hypothetical protein complement(1487792..1489030) Chlorobium limicola DSM 245 6356152 YP_001943422.1 CDS Clim_1383 NC_010803.1 1489301 1489735 R KEGG: cph:Cpha266_1464 activator of HSP90 ATPase 1 family protein; activator of HSP90 ATPase 1 family protein complement(1489301..1489735) Chlorobium limicola DSM 245 6356153 YP_001943423.1 CDS Clim_1384 NC_010803.1 1489806 1490510 D PFAM: protein of unknown function DUF159; KEGG: cph:Cpha266_1054 protein of unknown function DUF159; hypothetical protein 1489806..1490510 Chlorobium limicola DSM 245 6356154 YP_001943424.1 CDS Clim_1385 NC_010803.1 1490700 1491857 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cph:Cpha266_1512 DegT/DnrJ/EryC1/StrS aminotransferase; Glutamine--scyllo-inositol transaminase complement(1490700..1491857) Chlorobium limicola DSM 245 6356156 YP_001943425.1 CDS Clim_1386 NC_010803.1 1492113 1493243 R PFAM: iron-containing alcohol dehydrogenase; KEGG: cph:Cpha266_1513 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(1492113..1493243) Chlorobium limicola DSM 245 6356157 YP_001943426.1 CDS Clim_1387 NC_010803.1 1493255 1493980 R PFAM: acylneuraminate cytidylyltransferase; KEGG: cte:CT1153 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase complement(1493255..1493980) Chlorobium limicola DSM 245 6356158 YP_001943427.1 CDS Clim_1388 NC_010803.1 1493989 1494942 R KEGG: cte:CT1154 hypothetical protein; hypothetical protein complement(1493989..1494942) Chlorobium limicola DSM 245 6356159 YP_001943428.1 CDS Clim_1389 NC_010803.1 1495687 1496136 D KEGG: cph:Cpha266_0798 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 1495687..1496136 Chlorobium limicola DSM 245 6356160 YP_001943429.1 CDS Clim_1390 NC_010803.1 1496301 1497539 R KEGG: cph:Cpha266_1516 hypothetical protein; hypothetical protein complement(1496301..1497539) Chlorobium limicola DSM 245 6356161 YP_001943430.1 CDS Clim_1391 NC_010803.1 1497560 1499392 D PFAM: AMP-dependent synthetase and ligase; KEGG: cph:Cpha266_1519 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1497560..1499392 Chlorobium limicola DSM 245 6356162 YP_001943431.1 CDS Clim_1392 NC_010803.1 1499443 1499997 D KEGG: cph:Cpha266_0655 hypothetical protein; hypothetical protein 1499443..1499997 Chlorobium limicola DSM 245 6356163 YP_001943432.1 CDS Clim_1393 NC_010803.1 1499998 1500834 R PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: cph:Cpha266_1520 HhH-GPD family protein; HhH-GPD family protein complement(1499998..1500834) Chlorobium limicola DSM 245 6356164 YP_001943433.1 CDS Clim_1394 NC_010803.1 1500850 1501692 R PFAM: beta-lactamase domain protein; KEGG: plt:Plut_0970 metal-dependent hydrolase; beta-lactamase domain-containing protein complement(1500850..1501692) Chlorobium limicola DSM 245 6356165 YP_001943434.1 CDS rplS NC_010803.1 1501902 1502264 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1501902..1502264) Chlorobium limicola DSM 245 6356166 YP_001943435.1 CDS trmD NC_010803.1 1502300 1503004 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1502300..1503004) Chlorobium limicola DSM 245 6356167 YP_001943436.1 CDS Clim_1397 NC_010803.1 1503044 1503550 R TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: cph:Cpha266_1523 16S rRNA processing protein RimM; 16S rRNA processing protein RimM complement(1503044..1503550) Chlorobium limicola DSM 245 6356168 YP_001943437.1 CDS rpsP NC_010803.1 1503575 1503976 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1503575..1503976) Chlorobium limicola DSM 245 6356169 YP_001943438.1 CDS Clim_1399 NC_010803.1 1504017 1505366 R KEGG: cph:Cpha266_1525 signal recognition particle subunit FFH/SRP54 (SRP54); TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(1504017..1505366) Chlorobium limicola DSM 245 6356170 YP_001943439.1 CDS Clim_1400 NC_010803.1 1505550 1506533 D TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: cph:Cpha266_1526 RfaE bifunctional protein; rfaE bifunctional protein 1505550..1506533 Chlorobium limicola DSM 245 6356171 YP_001943440.1 CDS Clim_1401 NC_010803.1 1506505 1507143 R KEGG: cph:Cpha266_1527 hypothetical protein; hypothetical protein complement(1506505..1507143) Chlorobium limicola DSM 245 6356172 YP_001943441.1 CDS Clim_1402 NC_010803.1 1507198 1507854 R PFAM: cyclase/dehydrase; KEGG: cph:Cpha266_1528 cyclase/dehydrase; cyclase/dehydrase complement(1507198..1507854) Chlorobium limicola DSM 245 6356173 YP_001943442.1 CDS Clim_1403 NC_010803.1 1507907 1509574 R KEGG: cph:Cpha266_1529 C-terminal processing peptidase-3. Serine peptidase. MEROPS family S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(1507907..1509574) Chlorobium limicola DSM 245 6356174 YP_001943443.1 CDS Clim_1404 NC_010803.1 1510440 1510925 R PFAM: Endoribonuclease L-PSP; KEGG: cph:Cpha266_1530 endoribonuclease L-PSP; endoribonuclease L-PSP complement(1510440..1510925) Chlorobium limicola DSM 245 6356175 YP_001943444.1 CDS Clim_1405 NC_010803.1 1511102 1511743 D PFAM: thiamine monophosphate synthase; KEGG: cph:Cpha266_1531 thiamine monophosphate synthase; thiamine monophosphate synthase 1511102..1511743 Chlorobium limicola DSM 245 6356176 YP_001943445.1 CDS Clim_1406 NC_010803.1 1511740 1512372 D KEGG: cph:Cpha266_1532 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 1511740..1512372 Chlorobium limicola DSM 245 6356177 YP_001943446.1 CDS Clim_1407 NC_010803.1 1512369 1513172 D TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: cph:Cpha266_1533 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 1512369..1513172 Chlorobium limicola DSM 245 6356178 YP_001943447.1 CDS Clim_1408 NC_010803.1 1513173 1514510 R KEGG: pvi:Cvib_0945 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase complement(1513173..1514510) Chlorobium limicola DSM 245 6356179 YP_001943448.1 CDS Clim_1409 NC_010803.1 1514571 1515425 R KEGG: cph:Cpha266_1535 hypothetical protein; hypothetical protein complement(1514571..1515425) Chlorobium limicola DSM 245 6356180 YP_001943449.1 CDS Clim_1410 NC_010803.1 1515407 1516111 R KEGG: cph:Cpha266_1536 hypothetical protein; hypothetical protein complement(1515407..1516111) Chlorobium limicola DSM 245 6356181 YP_001943450.1 CDS Clim_1411 NC_010803.1 1516156 1517667 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1516156..1517667) Chlorobium limicola DSM 245 6356182 YP_001943451.1 CDS Clim_1412 NC_010803.1 1517711 1518772 R PFAM: phosphoesterase RecJ domain protein; KEGG: cph:Cpha266_1538 phosphoesterase, RecJ domain protein; phosphoesterase RecJ domain-containing protein complement(1517711..1518772) Chlorobium limicola DSM 245 6356183 YP_001943452.1 CDS Clim_1413 NC_010803.1 1518860 1519198 R KEGG: pvi:Cvib_0949 transcriptional regulator; transcriptional regulator complement(1518860..1519198) Chlorobium limicola DSM 245 6356184 YP_001943453.1 CDS Clim_1414 NC_010803.1 1519496 1520581 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: cph:Cpha266_1539 radical SAM enzyme, Cfr family; radical SAM enzyme, Cfr family 1519496..1520581 Chlorobium limicola DSM 245 6356185 YP_001943454.1 CDS Clim_1415 NC_010803.1 1520603 1521382 D KEGG: cph:Cpha266_1540 hypothetical protein; hypothetical protein 1520603..1521382 Chlorobium limicola DSM 245 6356186 YP_001943455.1 CDS adk NC_010803.1 1521393 1522052 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1521393..1522052 Chlorobium limicola DSM 245 6356187 YP_001943456.1 CDS Clim_1417 NC_010803.1 1522078 1524510 D KEGG: cph:Cpha266_1542 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' 1522078..1524510 Chlorobium limicola DSM 245 6356188 YP_001943457.1 CDS Clim_1418 NC_010803.1 1524879 1525382 D PFAM: DoxX family protein; KEGG: cph:Cpha266_1543 DoxX family protein; DoxX family protein 1524879..1525382 Chlorobium limicola DSM 245 6356189 YP_001943458.1 CDS Clim_1419 NC_010803.1 1525388 1526551 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cph:Cpha266_1507 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1525388..1526551) Chlorobium limicola DSM 245 6356190 YP_001943459.1 CDS Clim_1420 NC_010803.1 1526558 1528924 R PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1508 protein of unknown function DUF214; hypothetical protein complement(1526558..1528924) Chlorobium limicola DSM 245 6356191 YP_001943460.1 CDS Clim_1421 NC_010803.1 1528932 1529666 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_1509 ABC transporter; ABC transporter complement(1528932..1529666) Chlorobium limicola DSM 245 6356192 YP_001943461.1 CDS Clim_1422 NC_010803.1 1529685 1530092 R KEGG: cph:Cpha266_1634 conserved hypothetical protein-signal peptide prediction; hypothetical protein complement(1529685..1530092) Chlorobium limicola DSM 245 6356193 YP_001943462.1 CDS Clim_1423 NC_010803.1 1530272 1530976 D PFAM: LmbE family protein; KEGG: sru:SRU_0866 GlcNAc-PI de-N-acetylase family; LmbE family protein 1530272..1530976 Chlorobium limicola DSM 245 6356194 YP_001943463.1 CDS Clim_1424 NC_010803.1 1531157 1531609 D SMART: nuclear protein SET; KEGG: cph:Cpha266_1635 nuclear protein SET; nuclear protein SET 1531157..1531609 Chlorobium limicola DSM 245 6356195 YP_001943464.1 CDS Clim_1425 NC_010803.1 1531767 1532174 D KEGG: cch:Cag_1113 hypothetical protein; hypothetical protein 1531767..1532174 Chlorobium limicola DSM 245 6356196 YP_001943465.1 CDS Clim_1426 NC_010803.1 1532176 1533366 R PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: cph:Cpha266_1004 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(1532176..1533366) Chlorobium limicola DSM 245 6356197 YP_001943466.1 CDS Clim_1427 NC_010803.1 1533356 1533817 R PFAM: protein of unknown function DUF134; KEGG: cph:Cpha266_1003 protein of unknown function DUF134; hypothetical protein complement(1533356..1533817) Chlorobium limicola DSM 245 6356198 YP_001943467.1 CDS Clim_1428 NC_010803.1 1533840 1534820 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: cph:Cpha266_1002 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein complement(1533840..1534820) Chlorobium limicola DSM 245 6356199 YP_001943468.1 CDS Clim_1429 NC_010803.1 1534887 1535294 R PFAM: OsmC family protein; KEGG: cph:Cpha266_1001 OsmC family protein; OsmC family protein complement(1534887..1535294) Chlorobium limicola DSM 245 6356200 YP_001943469.1 CDS Clim_1430 NC_010803.1 1535603 1536961 R PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1561 HI0933 family protein; hypothetical protein complement(1535603..1536961) Chlorobium limicola DSM 245 6356201 YP_001943470.1 CDS Clim_1431 NC_010803.1 1536962 1538401 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1562 RND efflux system, outer membrane lipoprotein, NodT family; NodT family RND efflux system outer membrane lipoprotein complement(1536962..1538401) Chlorobium limicola DSM 245 6356202 YP_001943471.1 CDS Clim_1432 NC_010803.1 1538424 1541612 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cph:Cpha266_1563 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(1538424..1541612) Chlorobium limicola DSM 245 6356203 YP_001943472.1 CDS Clim_1433 NC_010803.1 1541680 1542801 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: cph:Cpha266_1564 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1541680..1542801) Chlorobium limicola DSM 245 6356204 YP_001943473.1 CDS Clim_1434 NC_010803.1 1542840 1543754 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: plt:Plut_0805 AraC family transcriptional regulator; AraC family transcriptional regulator complement(1542840..1543754) Chlorobium limicola DSM 245 6356205 YP_001943474.1 CDS Clim_1435 NC_010803.1 1544018 1544491 R KEGG: ppd:Ppro_1338 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase complement(1544018..1544491) Chlorobium limicola DSM 245 6356206 YP_001943475.1 CDS Clim_1436 NC_010803.1 1544506 1545186 R PFAM: Protein of unknown function DUF1847; KEGG: cph:Cpha266_1986 hypothetical protein; hypothetical protein complement(1544506..1545186) Chlorobium limicola DSM 245 6356207 YP_001943476.1 CDS Clim_1437 NC_010803.1 1545393 1546133 D hypothetical protein 1545393..1546133 Chlorobium limicola DSM 245 6356208 YP_001943477.1 CDS Clim_1438 NC_010803.1 1546325 1547410 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cph:Cpha266_1567 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(1546325..1547410) Chlorobium limicola DSM 245 6356209 YP_001943478.1 CDS Clim_1439 NC_010803.1 1547732 1548148 D PFAM: Secreted repeat of unknown function; KEGG: plt:Plut_0063 hypothetical protein; hypothetical protein 1547732..1548148 Chlorobium limicola DSM 245 6356210 YP_001943479.1 CDS Clim_1440 NC_010803.1 1548234 1549256 D PFAM: UbiA prenyltransferase; KEGG: cph:Cpha266_1569 UbiA prenyltransferase; UbiA prenyltransferase 1548234..1549256 Chlorobium limicola DSM 245 6356211 YP_001943480.1 CDS Clim_1442 NC_010803.1 1549498 1549908 D KEGG: cph:Cpha266_1572 hypothetical protein; hypothetical protein 1549498..1549908 Chlorobium limicola DSM 245 6356213 YP_001943481.1 CDS Clim_1443 NC_010803.1 1549957 1550751 D PFAM: fatty acid hydroxylase; KEGG: cph:Cpha266_1574 sterol desaturase; fatty acid hydroxylase 1549957..1550751 Chlorobium limicola DSM 245 6354756 YP_001943482.1 CDS Clim_1444 NC_010803.1 1550758 1551222 R SMART: Rhodanese domain protein; KEGG: cph:Cpha266_1575 rhodanese domain protein; rhodanese domain-containing protein complement(1550758..1551222) Chlorobium limicola DSM 245 6354757 YP_001943483.1 CDS Clim_1445 NC_010803.1 1551224 1551868 R KEGG: cph:Cpha266_1576 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(1551224..1551868) Chlorobium limicola DSM 245 6354758 YP_001943484.1 CDS Clim_1446 NC_010803.1 1551961 1552824 R KEGG: bfs:BF2166 hypothetical protein; hypothetical protein complement(1551961..1552824) Chlorobium limicola DSM 245 6354759 YP_001943485.1 CDS Clim_1447 NC_010803.1 1552980 1553855 R metalloprotease; heat shock protein HtpX complement(1552980..1553855) Chlorobium limicola DSM 245 6354760 YP_001943486.1 CDS Clim_1448 NC_010803.1 1554224 1555216 R KEGG: sma:SAV3183 hypothetical protein; hypothetical protein complement(1554224..1555216) Chlorobium limicola DSM 245 6354761 YP_001943487.1 CDS Clim_1449 NC_010803.1 1555692 1556159 D hypothetical protein 1555692..1556159 Chlorobium limicola DSM 245 6354762 YP_001943488.1 CDS Clim_1450 NC_010803.1 1556198 1556488 R hypothetical protein complement(1556198..1556488) Chlorobium limicola DSM 245 6354763 YP_001943489.1 CDS Clim_1451 NC_010803.1 1556775 1557782 R KEGG: cph:Cpha266_1913 hypothetical protein; hypothetical protein complement(1556775..1557782) Chlorobium limicola DSM 245 6354764 YP_001943490.1 CDS Clim_1452 NC_010803.1 1558369 1558605 D KEGG: cte:CT0924 hypothetical protein; hypothetical protein 1558369..1558605 Chlorobium limicola DSM 245 6354765 YP_001943491.1 CDS Clim_1453 NC_010803.1 1558639 1559262 D PFAM: methyltransferase; KEGG: cph:Cpha266_1584 methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 1558639..1559262 Chlorobium limicola DSM 245 6354766 YP_001943492.1 CDS Clim_1454 NC_010803.1 1559311 1559718 D KEGG: aeh:Mlg_2346 ATPase (AAA+ superfamily)-like protein; ATPase (AAA+ superfamily)-like protein 1559311..1559718 Chlorobium limicola DSM 245 6354767 YP_001943493.1 CDS Clim_1455 NC_010803.1 1559986 1560957 D KEGG: pgi:PG1070 L-lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein 1559986..1560957 Chlorobium limicola DSM 245 6354768 YP_001943494.1 CDS Clim_1456 NC_010803.1 1561916 1563484 D PFAM: transposase IS4 family protein; KEGG: amt:Amet_3130 transposase, IS4 family protein; transposase IS4 family protein 1561916..1563484 Chlorobium limicola DSM 245 6354769 YP_001943495.1 CDS Clim_1457 NC_010803.1 1563525 1563932 R PFAM: twitching mobility protein PilT; KEGG: dol:Dole_3167 twitching mobility protein PilT; twitching mobility protein PilT complement(1563525..1563932) Chlorobium limicola DSM 245 6354770 YP_001943496.1 CDS Clim_1458 NC_010803.1 1563929 1564153 R TIGRFAM: AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain protein; KEGG: cph:Cpha266_2120 AbrB family transcriptional regulator; AbrB family transcriptional regulator complement(1563929..1564153) Chlorobium limicola DSM 245 6354771 YP_001943497.1 CDS Clim_1460 NC_010803.1 1564580 1564831 R KEGG: bja:bll8207 hypothetical protein; hypothetical protein complement(1564580..1564831) Chlorobium limicola DSM 245 6354773 YP_001943498.1 CDS Clim_1461 NC_010803.1 1564994 1565644 R KEGG: aav:Aave_3356 hypothetical protein; hypothetical protein complement(1564994..1565644) Chlorobium limicola DSM 245 6354774 YP_001943499.1 CDS Clim_1462 NC_010803.1 1565641 1566912 R PFAM: SMC domain protein; KEGG: mar:MAE_39710 ATPase; SMC domain-containing protein complement(1565641..1566912) Chlorobium limicola DSM 245 6354775 YP_001943500.1 CDS Clim_1464 NC_010803.1 1567986 1568735 R KEGG: cph:Cpha266_1395 hypothetical protein; hypothetical protein complement(1567986..1568735) Chlorobium limicola DSM 245 6354777 YP_001943501.1 CDS Clim_1465 NC_010803.1 1568806 1569375 R KEGG: cph:Cpha266_1396 hypothetical protein; hypothetical protein complement(1568806..1569375) Chlorobium limicola DSM 245 6354778 YP_001943502.1 CDS Clim_1466 NC_010803.1 1569410 1572130 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sfu:Sfum_2856 DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein complement(1569410..1572130) Chlorobium limicola DSM 245 6354779 YP_001943503.1 CDS Clim_1467 NC_010803.1 1572330 1573856 R KEGG: cph:Cpha266_0634 transcriptional regulator; transcriptional regulator complement(1572330..1573856) Chlorobium limicola DSM 245 6354780 YP_001943504.1 CDS Clim_1468 NC_010803.1 1573849 1576926 R PFAM: type III restriction protein res subunit; KEGG: dau:Daud_0199 type III restriction enzyme, res subunit; type III restriction protein res subunit complement(1573849..1576926) Chlorobium limicola DSM 245 6354781 YP_001943505.1 CDS Clim_1470 NC_010803.1 1577373 1577792 R PFAM: protein of unknown function DUF86; KEGG: cph:Cpha266_0768 protein of unknown function DUF86; hypothetical protein complement(1577373..1577792) Chlorobium limicola DSM 245 6354783 YP_001943506.1 CDS Clim_1471 NC_010803.1 1577777 1578196 R PFAM: DNA polymerase beta domain protein region; KEGG: cph:Cpha266_0766 DNA polymerase, beta domain protein region; DNA polymerase beta domain-containing protein complement(1577777..1578196) Chlorobium limicola DSM 245 6354784 YP_001943507.1 CDS Clim_1472 NC_010803.1 1578283 1578771 R KEGG: cph:Cpha266_1985 hypothetical protein; hypothetical protein complement(1578283..1578771) Chlorobium limicola DSM 245 6354785 YP_001943508.1 CDS Clim_1473 NC_010803.1 1578898 1579479 D PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_1984 pentapeptide repeat protein; pentapeptide repeat-containing protein 1578898..1579479 Chlorobium limicola DSM 245 6354786 YP_001943509.1 CDS Clim_1474 NC_010803.1 1579699 1580979 D PFAM: HipA domain protein; KEGG: aba:Acid345_2426 HipA-like protein; HipA domain-containing protein 1579699..1580979 Chlorobium limicola DSM 245 6354787 YP_001943510.1 CDS Clim_1475 NC_010803.1 1581088 1581195 R hypothetical protein complement(1581088..1581195) Chlorobium limicola DSM 245 6354788 YP_001943511.1 CDS Clim_1476 NC_010803.1 1581786 1584782 D PFAM: leucine-rich repeat protein; Miro domain protein; KEGG: ter:Tery_3798 small GTP-binding protein; Miro domain-containing protein 1581786..1584782 Chlorobium limicola DSM 245 6354789 YP_001943512.1 CDS Clim_1477 NC_010803.1 1584818 1585369 D SMART: TIR protein; KEGG: amr:AM1_H0064 hypothetical protein; TIR protein 1584818..1585369 Chlorobium limicola DSM 245 6354790 YP_001943513.1 CDS Clim_1479 NC_010803.1 1586408 1586866 R KEGG: cch:Cag_1797 hypothetical protein; hypothetical protein complement(1586408..1586866) Chlorobium limicola DSM 245 6354792 YP_001943514.1 CDS Clim_1480 NC_010803.1 1586872 1587276 R PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_1798 XRE family transcriptional regulator; XRE family transcriptional regulator complement(1586872..1587276) Chlorobium limicola DSM 245 6354793 YP_001943515.1 CDS Clim_1481 NC_010803.1 1587279 1587764 R KEGG: cch:Cag_1799 hypothetical protein; hypothetical protein complement(1587279..1587764) Chlorobium limicola DSM 245 6354794 YP_001943516.1 CDS Clim_1483 NC_010803.1 1588746 1589792 D KEGG: cph:Cpha266_2139 transposase and inactivated derivatives; transposase and inactivated derivatives 1588746..1589792 Chlorobium limicola DSM 245 6354796 YP_001943517.1 CDS Clim_1484 NC_010803.1 1589776 1590009 D PFAM: DNA repair protein RadC; KEGG: cph:Cpha266_1619 DNA repair protein RadC; DNA repair protein RadC 1589776..1590009 Chlorobium limicola DSM 245 6354797 YP_001943518.1 CDS Clim_1485 NC_010803.1 1590352 1591005 D KEGG: cch:Cag_1820 hypothetical protein; hypothetical protein 1590352..1591005 Chlorobium limicola DSM 245 6354798 YP_001943519.1 CDS Clim_1487 NC_010803.1 1591624 1592007 D KEGG: cph:Cpha266_1622 hypothetical protein; hypothetical protein 1591624..1592007 Chlorobium limicola DSM 245 6354800 YP_001943520.1 CDS Clim_1488 NC_010803.1 1593688 1595181 D KEGG: cph:Cpha266_1628 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 1593688..1595181 Chlorobium limicola DSM 245 6354804 YP_001943521.1 CDS Clim_1489 NC_010803.1 1595290 1596396 D KEGG: cte:CT1294 hypothetical protein; hypothetical protein 1595290..1596396 Chlorobium limicola DSM 245 6354805 YP_001943522.1 CDS Clim_1490 NC_010803.1 1596443 1597573 D PFAM: protein of unknown function DUF1615; KEGG: cte:CT1294 hypothetical protein; hypothetical protein 1596443..1597573 Chlorobium limicola DSM 245 6354806 YP_001943523.1 CDS Clim_1492 NC_010803.1 1602120 1603976 R KEGG: cph:Cpha266_1630 protoporphyrin IX magnesium-chelatase; TIGRFAM: magnesium chelatase ATPase subunit D; PFAM: magnesium chelatase ChlI subunit; von Willebrand factor type A; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; magnesium chelatase ATPase subunit D complement(1602120..1603976) Chlorobium limicola DSM 245 6354808 YP_001943524.1 CDS Clim_1493 NC_010803.1 1603976 1605136 R KEGG: cph:Cpha266_1631 protoporphyrin IX magnesium-chelatase; TIGRFAM: magnesium chelatase ATPase subunit I; SMART: AAA ATPase; magnesium chelatase ATPase subunit I complement(1603976..1605136) Chlorobium limicola DSM 245 6354809 YP_001943525.1 CDS Clim_1494 NC_010803.1 1605315 1606736 R TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1632 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase complement(1605315..1606736) Chlorobium limicola DSM 245 6354810 YP_001943526.1 CDS Clim_1495 NC_010803.1 1606803 1607867 D KEGG: plt:Plut_0783 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1606803..1607867 Chlorobium limicola DSM 245 6354811 YP_001943527.1 CDS Clim_1496 NC_010803.1 1608217 1609278 D KEGG: cte:CT1305 hypothetical protein; hypothetical protein 1608217..1609278 Chlorobium limicola DSM 245 6354812 YP_001943528.1 CDS Clim_1497 NC_010803.1 1609350 1609862 D KEGG: cph:Cpha266_1359 hypothetical protein; hypothetical protein 1609350..1609862 Chlorobium limicola DSM 245 6354813 YP_001943529.1 CDS Clim_1498 NC_010803.1 1610209 1612401 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: cph:Cpha266_1010 Oligopeptidase B. Serine peptidase. MEROPS family S09A; prolyl oligopeptidase 1610209..1612401 Chlorobium limicola DSM 245 6354814 YP_001943530.1 CDS Clim_1499 NC_010803.1 1612462 1613166 R PFAM: DNA alkylation repair enzyme; KEGG: cte:CT1302 hypothetical protein; DNA alkylation repair protein complement(1612462..1613166) Chlorobium limicola DSM 245 6354815 YP_001943531.1 CDS Clim_1500 NC_010803.1 1613384 1615276 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_1008 Fis family transcriptional regulator; ABC transporter complement(1613384..1615276) Chlorobium limicola DSM 245 6354816 YP_001943532.1 CDS Clim_1501 NC_010803.1 1615485 1616039 D KEGG: pvi:Cvib_1065 hypothetical protein; hypothetical protein 1615485..1616039 Chlorobium limicola DSM 245 6354817 YP_001943533.1 CDS Clim_1503 NC_010803.1 1616905 1617606 D PFAM: Abortive infection protein; KEGG: plt:Plut_0757 abortive infection protein-like; abortive infection protein 1616905..1617606 Chlorobium limicola DSM 245 6354819 YP_001943534.1 CDS Clim_1504 NC_010803.1 1617644 1618738 R KEGG: cph:Cpha266_0714 hypothetical protein; hypothetical protein complement(1617644..1618738) Chlorobium limicola DSM 245 6354820 YP_001943535.1 CDS Clim_1505 NC_010803.1 1619563 1621146 D KEGG: cph:Cpha266_1154 hypothetical protein; hypothetical protein 1619563..1621146 Chlorobium limicola DSM 245 6354821 YP_001943536.1 CDS Clim_1506 NC_010803.1 1621221 1622279 R PFAM: Di-haem cytochrome c peroxidase; KEGG: cph:Cpha266_1353 cytochrome-c peroxidase; cytochrome-c peroxidase complement(1621221..1622279) Chlorobium limicola DSM 245 6354822 YP_001943537.1 CDS Clim_1507 NC_010803.1 1622325 1625105 R KEGG: cph:Cpha266_2350 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(1622325..1625105) Chlorobium limicola DSM 245 6354823 YP_001943538.1 CDS Clim_1508 NC_010803.1 1625332 1626033 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_1636 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1625332..1626033 Chlorobium limicola DSM 245 6354824 YP_001943539.1 CDS Clim_1509 NC_010803.1 1626158 1627021 D PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_1637 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1626158..1627021 Chlorobium limicola DSM 245 6354825 YP_001943540.1 CDS Clim_1510 NC_010803.1 1627012 1627671 D PFAM: thymidylate kinase; KEGG: cph:Cpha266_1638 thymidylate kinase; dTMP kinase 1627012..1627671 Chlorobium limicola DSM 245 6354826 YP_001943541.1 CDS Clim_1511 NC_010803.1 1627811 1629073 D KEGG: pvi:Cvib_1046 hypothetical protein; hypothetical protein 1627811..1629073 Chlorobium limicola DSM 245 6354827 YP_001943542.1 CDS Clim_1512 NC_010803.1 1629113 1632274 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_1640 beta-phosphoglucomutase family hydrolase; beta-phosphoglucomutase family hydrolase 1629113..1632274 Chlorobium limicola DSM 245 6354828 YP_001943543.1 CDS Clim_1513 NC_010803.1 1632390 1633430 D TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: plt:Plut_1313 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 1632390..1633430 Chlorobium limicola DSM 245 6354829 YP_001943544.1 CDS Clim_1514 NC_010803.1 1633452 1634198 D TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: cph:Cpha266_1642 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1633452..1634198 Chlorobium limicola DSM 245 6354830 YP_001943545.1 CDS Clim_1515 NC_010803.1 1634468 1634914 D PFAM: thioesterase superfamily protein; KEGG: cch:Cag_0930 phenylacetic acid degradation-related protein; thioesterase superfamily protein 1634468..1634914 Chlorobium limicola DSM 245 6355772 YP_001943546.1 CDS Clim_1516 NC_010803.1 1635036 1636445 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_1644 radical SAM domain protein; radical SAM protein 1635036..1636445 Chlorobium limicola DSM 245 6355773 YP_001943547.1 CDS Clim_1517 NC_010803.1 1636491 1636994 D KEGG: plt:Plut_0061 hypothetical protein; hypothetical protein 1636491..1636994 Chlorobium limicola DSM 245 6355774 YP_001943548.1 CDS Clim_1518 NC_010803.1 1637302 1637931 R PFAM: Curli production assembly/transport component CsgG; KEGG: cph:Cpha266_1717 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG complement(1637302..1637931) Chlorobium limicola DSM 245 6355775 YP_001943549.1 CDS aspS NC_010803.1 1638755 1640572 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1638755..1640572) Chlorobium limicola DSM 245 6355776 YP_001943550.1 CDS Clim_1521 NC_010803.1 1642459 1643784 R PFAM: ribonuclease BN; KEGG: cph:Cpha266_1653 ribonuclease BN; ribonuclease BN complement(1642459..1643784) Chlorobium limicola DSM 245 6355778 YP_001943551.1 CDS Clim_1522 NC_010803.1 1643794 1645074 R PFAM: major facilitator superfamily MFS_1; KEGG: pvi:Cvib_0729 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(1643794..1645074) Chlorobium limicola DSM 245 6355779 YP_001943552.1 CDS Clim_1523 NC_010803.1 1645096 1645803 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I complement(1645096..1645803) Chlorobium limicola DSM 245 6355780 YP_001943553.1 CDS Clim_1524 NC_010803.1 1645820 1646074 R TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: pvi:Cvib_0727 phosphoribosylformylglycinamidine synthase, PurS; phosphoribosylformylglycinamidine synthase PurS complement(1645820..1646074) Chlorobium limicola DSM 245 6355781 YP_001943554.1 CDS Clim_1525 NC_010803.1 1646102 1646905 R TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cph:Cpha266_1657 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase complement(1646102..1646905) Chlorobium limicola DSM 245 6355782 YP_001943555.1 CDS panB NC_010803.1 1647102 1647935 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(1647102..1647935) Chlorobium limicola DSM 245 6355783 YP_001943556.1 CDS Clim_1527 NC_010803.1 1647932 1648756 R PFAM: biotin/lipoate A/B protein ligase; KEGG: plt:Plut_1329 lipoate-protein ligase A-like; biotin/lipoate A/B protein ligase complement(1647932..1648756) Chlorobium limicola DSM 245 6355784 YP_001943557.1 CDS Clim_1528 NC_010803.1 1648814 1649419 R KEGG: cph:Cpha266_1660 hypothetical protein; hypothetical protein complement(1648814..1649419) Chlorobium limicola DSM 245 6355785 YP_001943558.1 CDS ddl NC_010803.1 1649740 1650831 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 1649740..1650831 Chlorobium limicola DSM 245 6354634 YP_001943559.1 CDS Clim_1530 NC_010803.1 1650860 1651435 D KEGG: cte:CT1346 hypothetical protein; hypothetical protein 1650860..1651435 Chlorobium limicola DSM 245 6354177 YP_001943560.1 CDS Clim_1531 NC_010803.1 1651542 1652960 D PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1665 outer membrane efflux protein; outer membrane efflux protein 1651542..1652960 Chlorobium limicola DSM 245 6354178 YP_001943561.1 CDS Clim_1532 NC_010803.1 1652988 1654235 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1666 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1652988..1654235 Chlorobium limicola DSM 245 6354179 YP_001943562.1 CDS Clim_1533 NC_010803.1 1654245 1654931 D PFAM: ABC transporter; SMART: AAA ATPase; KEGG: plt:Plut_1335 ATPase; ABC transporter 1654245..1654931 Chlorobium limicola DSM 245 6354180 YP_001943563.1 CDS Clim_1534 NC_010803.1 1654928 1656193 D PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1668 protein of unknown function DUF214; hypothetical protein 1654928..1656193 Chlorobium limicola DSM 245 6354181 YP_001943564.1 CDS Clim_1535 NC_010803.1 1656186 1657439 D PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1669 protein of unknown function DUF214; hypothetical protein 1656186..1657439 Chlorobium limicola DSM 245 6354182 YP_001943565.1 CDS Clim_1536 NC_010803.1 1657472 1658416 R KEGG: cph:Cpha266_1670 hypothetical protein; hypothetical protein complement(1657472..1658416) Chlorobium limicola DSM 245 6354183 YP_001943566.1 CDS Clim_1537 NC_010803.1 1658775 1659464 D PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: plt:Plut_1338 OmpA family protein; OmpA/MotB domain-containing protein 1658775..1659464 Chlorobium limicola DSM 245 6354184 YP_001943567.1 CDS Clim_1538 NC_010803.1 1659608 1660000 D KEGG: cph:Cpha266_1672 hypothetical protein; hypothetical protein 1659608..1660000 Chlorobium limicola DSM 245 6354185 YP_001943568.1 CDS Clim_1539 NC_010803.1 1660084 1661136 R TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: cph:Cpha266_1673 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase complement(1660084..1661136) Chlorobium limicola DSM 245 6354186 YP_001943569.1 CDS Clim_1540 NC_010803.1 1661126 1661284 R hypothetical protein complement(1661126..1661284) Chlorobium limicola DSM 245 6354187 YP_001943570.1 CDS Clim_1541 NC_010803.1 1661309 1662292 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1661309..1662292 Chlorobium limicola DSM 245 6354188 YP_001943571.1 CDS Clim_1542 NC_010803.1 1662324 1662914 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1662324..1662914 Chlorobium limicola DSM 245 6354189 YP_001943572.1 CDS Clim_1543 NC_010803.1 1663055 1664545 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_1676 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1663055..1664545 Chlorobium limicola DSM 245 6354190 YP_001943573.1 CDS Clim_1544 NC_010803.1 1664542 1665102 D PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_1677 NUDIX hydrolase; NUDIX hydrolase 1664542..1665102 Chlorobium limicola DSM 245 6354191 YP_001943574.1 CDS Clim_1545 NC_010803.1 1665127 1665402 D KEGG: plt:Plut_1345 hypothetical protein; hypothetical protein 1665127..1665402 Chlorobium limicola DSM 245 6354192 YP_001943575.1 CDS Clim_1546 NC_010803.1 1665418 1665795 D KEGG: cph:Cpha266_0748 hypothetical protein; hypothetical protein 1665418..1665795 Chlorobium limicola DSM 245 6354193 YP_001943576.1 CDS Clim_1547 NC_010803.1 1665932 1666138 R hypothetical protein complement(1665932..1666138) Chlorobium limicola DSM 245 6354194 YP_001943577.1 CDS Clim_1549 NC_010803.1 1668046 1668798 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: cph:Cpha266_2240 IstB domain protein ATP-binding protein; IstB domain-containing protein ATP-binding protein 1668046..1668798 Chlorobium limicola DSM 245 6354196 YP_001943578.1 CDS Clim_1550 NC_010803.1 1669601 1669780 R hypothetical protein complement(1669601..1669780) Chlorobium limicola DSM 245 6354197 YP_001943579.1 CDS Clim_1551 NC_010803.1 1670024 1672228 R PFAM: ComEC/Rec2-related protein; KEGG: cph:Cpha266_1722 ComEC/Rec2-related protein; ComEC/Rec2-like protein complement(1670024..1672228) Chlorobium limicola DSM 245 6354198 YP_001943580.1 CDS Clim_1552 NC_010803.1 1672341 1673213 D KEGG: cph:Cpha266_1723 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 1672341..1673213 Chlorobium limicola DSM 245 6354199 YP_001943581.1 CDS Clim_1553 NC_010803.1 1673266 1674519 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cph:Cpha266_1724 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(1673266..1674519) Chlorobium limicola DSM 245 6354200 YP_001943582.1 CDS rpmG NC_010803.1 1674676 1674858 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1674676..1674858 Chlorobium limicola DSM 245 6354201 YP_001943583.1 CDS Clim_1555 NC_010803.1 1675163 1675963 D PFAM: protein of unknown function DUF164; KEGG: plt:Plut_1350 hypothetical protein; hypothetical protein 1675163..1675963 Chlorobium limicola DSM 245 6354203 YP_001943584.1 CDS Clim_1556 NC_010803.1 1676418 1676609 R KEGG: cte:CT1379 hypothetical protein; hypothetical protein complement(1676418..1676609) Chlorobium limicola DSM 245 6354204 YP_001943585.1 CDS Clim_1557 NC_010803.1 1676659 1677486 R KEGG: cph:Cpha266_1728 hypothetical protein; hypothetical protein complement(1676659..1677486) Chlorobium limicola DSM 245 6354205 YP_001943586.1 CDS Clim_1558 NC_010803.1 1677509 1678669 R PFAM: aminotransferase class I and II; KEGG: cch:Cag_0798 aspartate aminotransferase; class I and II aminotransferase complement(1677509..1678669) Chlorobium limicola DSM 245 6354206 YP_001943587.1 CDS Clim_1559 NC_010803.1 1678709 1678933 R KEGG: cph:Cpha266_1731 hypothetical protein; hypothetical protein complement(1678709..1678933) Chlorobium limicola DSM 245 6354207 YP_001943588.1 CDS Clim_1560 NC_010803.1 1678997 1679482 R PFAM: protein of unknown function DUF456; KEGG: plt:Plut_0433 hypothetical protein; hypothetical protein complement(1678997..1679482) Chlorobium limicola DSM 245 6354208 YP_001943589.1 CDS Clim_1562 NC_010803.1 1680164 1681726 D PFAM: transposase IS4 family protein; KEGG: amt:Amet_3130 transposase, IS4 family protein; transposase IS4 family protein 1680164..1681726 Chlorobium limicola DSM 245 6354210 YP_001943590.1 CDS Clim_1563 NC_010803.1 1682138 1682545 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cps:CPS_3973 biopolymer transport ExbD protein; biopolymer transport protein ExbD/TolR 1682138..1682545 Chlorobium limicola DSM 245 6354211 YP_001943591.1 CDS Clim_1564 NC_010803.1 1682542 1683201 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: met:M446_0507 TonB family protein; TonB family protein 1682542..1683201 Chlorobium limicola DSM 245 6354212 YP_001943592.1 CDS Clim_1565 NC_010803.1 1683466 1684191 D PFAM: iron dependent repressor; FeoA family protein; KEGG: cte:CT1737 iron-dependent repressor; DtxR family iron (metal) dependent repressor 1683466..1684191 Chlorobium limicola DSM 245 6354213 YP_001943593.1 CDS Clim_1566 NC_010803.1 1684215 1684826 D KEGG: cph:Cpha266_0315 hypothetical protein; hypothetical protein 1684215..1684826 Chlorobium limicola DSM 245 6354214 YP_001943594.1 CDS Clim_1567 NC_010803.1 1685499 1686491 D PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: tex:Teth514_0307 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein 1685499..1686491 Chlorobium limicola DSM 245 6354215 YP_001943595.1 CDS Clim_1568 NC_010803.1 1686505 1687068 D KEGG: bth:BT_3628 hypothetical protein; hypothetical protein 1686505..1687068 Chlorobium limicola DSM 245 6354216 YP_001943596.1 CDS Clim_1569 NC_010803.1 1687180 1688103 D PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: hmo:HM1_2393 sirohydrochlorin cobaltochelatase; cobalamin (vitamin B12) biosynthesis CbiX protein 1687180..1688103 Chlorobium limicola DSM 245 6354217 YP_001943597.1 CDS Clim_1571 NC_010803.1 1688873 1690414 R PFAM: transposase IS4 family protein; KEGG: cph:Cpha266_2634 transposase, IS4 family protein; transposase IS4 family protein complement(1688873..1690414) Chlorobium limicola DSM 245 6354219 YP_001943598.1 CDS Clim_1572 NC_010803.1 1691791 1693122 R KEGG: dde:Dde_0446 hypothetical protein; hypothetical protein complement(1691791..1693122) Chlorobium limicola DSM 245 6354220 YP_001943599.1 CDS Clim_1573 NC_010803.1 1693109 1693783 R KEGG: dde:Dde_0446 hypothetical protein; hypothetical protein complement(1693109..1693783) Chlorobium limicola DSM 245 6354221 YP_001943600.1 CDS Clim_1574 NC_010803.1 1693794 1694699 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: dde:Dde_0445 ATPase; ABC transporter complement(1693794..1694699) Chlorobium limicola DSM 245 6354222 YP_001943601.1 CDS Clim_1576 NC_010803.1 1696893 1698260 R PFAM: transposase IS4 family protein; KEGG: cph:Cpha266_2634 transposase, IS4 family protein; transposase IS4 family protein complement(1696893..1698260) Chlorobium limicola DSM 245 6354224 YP_001943602.1 CDS Clim_1577 NC_010803.1 1699037 1699468 R KEGG: cch:Cag_0916 C-type cytochrome; hypothetical protein complement(1699037..1699468) Chlorobium limicola DSM 245 6354225 YP_001943603.1 CDS Clim_1579 NC_010803.1 1701530 1701748 R KEGG: bay:RBAM_007330 YezD; hypothetical protein complement(1701530..1701748) Chlorobium limicola DSM 245 6354227 YP_001943604.1 CDS Clim_1580 NC_010803.1 1701984 1703066 R PFAM: ferredoxin; KEGG: cph:Cpha266_1733 ferredoxin; ferredoxin complement(1701984..1703066) Chlorobium limicola DSM 245 6354228 YP_001943605.1 CDS Clim_1581 NC_010803.1 1703105 1703929 R KEGG: cph:Cpha266_1734 hypothetical protein; hypothetical protein complement(1703105..1703929) Chlorobium limicola DSM 245 6354229 YP_001943606.1 CDS Clim_1582 NC_010803.1 1703978 1704550 R KEGG: cph:Cpha266_1735 hypothetical protein; hypothetical protein complement(1703978..1704550) Chlorobium limicola DSM 245 6354230 YP_001943607.1 CDS Clim_1583 NC_010803.1 1704553 1704987 R PFAM: protein of unknown function UPF0054; KEGG: cph:Cpha266_1736 protein of unknown function UPF0054; hypothetical protein complement(1704553..1704987) Chlorobium limicola DSM 245 6354231 YP_001943608.1 CDS Clim_1584 NC_010803.1 1704968 1706272 R TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: cph:Cpha266_1737 GTP-binding protein, HSR1-related; GTP-binding proten HflX complement(1704968..1706272) Chlorobium limicola DSM 245 6354232 YP_001943609.1 CDS Clim_1585 NC_010803.1 1706574 1707503 D PFAM: Squalene/phytoene synthase; KEGG: cph:Cpha266_1738 squalene/phytoene synthase; squalene/phytoene synthase 1706574..1707503 Chlorobium limicola DSM 245 6354233 YP_001943610.1 CDS lysS NC_010803.1 1707578 1709101 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1707578..1709101 Chlorobium limicola DSM 245 6354234 YP_001943611.1 CDS Clim_1587 NC_010803.1 1709166 1709843 D PFAM: AAA-4 family protein; KEGG: cph:Cpha266_1740 transcriptional regulator; transcriptional regulator 1709166..1709843 Chlorobium limicola DSM 245 6354235 YP_001943612.1 CDS Clim_1588 NC_010803.1 1709836 1710846 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pvi:Cvib_1219 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1709836..1710846) Chlorobium limicola DSM 245 6354236 YP_001943613.1 CDS Clim_1589 NC_010803.1 1710964 1711518 R PFAM: NGN domain protein; SMART: KOW domain protein; KEGG: cch:Cag_0149 NusG antitermination factor; NusG antitermination factor complement(1710964..1711518) Chlorobium limicola DSM 245 6354237 YP_001943614.1 CDS Clim_1590 NC_010803.1 1711807 1712148 D PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0166 tetratricopeptide TPR_2 repeat protein; hypothetical protein 1711807..1712148 Chlorobium limicola DSM 245 6354238 YP_001943615.1 CDS Clim_1591 NC_010803.1 1712380 1713519 D KEGG: cph:Cpha266_1759 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 1712380..1713519 Chlorobium limicola DSM 245 6354239 YP_001943616.1 CDS Clim_1592 NC_010803.1 1713522 1714811 D KEGG: cte:CT1398 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein YliG 1713522..1714811 Chlorobium limicola DSM 245 6354240 YP_001943617.1 CDS Clim_1593 NC_010803.1 1714824 1715750 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: ava:Ava_3014 DNA methylase N-4/N-6; DNA methylase N-4/N-6 domain-containing protein complement(1714824..1715750) Chlorobium limicola DSM 245 6354241 YP_001943618.1 CDS Clim_1594 NC_010803.1 1715734 1716270 R hypothetical protein complement(1715734..1716270) Chlorobium limicola DSM 245 6354242 YP_001943619.1 CDS Clim_1595 NC_010803.1 1716767 1717519 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: cph:Cpha266_2240 IstB domain protein ATP-binding protein; IstB domain-containing protein ATP-binding protein complement(1716767..1717519) Chlorobium limicola DSM 245 6354243 YP_001943620.1 CDS Clim_1596 NC_010803.1 1717516 1719054 R PFAM: Integrase catalytic region; KEGG: cph:Cpha266_2241 integrase, catalytic region; integrase catalytic subunit complement(1717516..1719054) Chlorobium limicola DSM 245 6354244 YP_001943621.1 CDS Clim_1597 NC_010803.1 1719351 1719884 R KEGG: gme:Gmet_1012 hemerythrin HHE cation binding region; hemerythrin HHE cation binding protein complement(1719351..1719884) Chlorobium limicola DSM 245 6354245 YP_001943622.1 CDS Clim_1598 NC_010803.1 1720392 1721372 R KEGG: cph:Cpha266_1247 PAS/PAC sensor protein; PAS/PAC sensor protein complement(1720392..1721372) Chlorobium limicola DSM 245 6354246 YP_001943623.1 CDS Clim_1600 NC_010803.1 1722355 1725357 R KEGG: cph:Cpha266_1788 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; SMART: PAS domain containing protein; MCP methyltransferase/methylesterase complement(1722355..1725357) Chlorobium limicola DSM 245 6354248 YP_001943624.1 CDS Clim_1601 NC_010803.1 1725685 1726359 R PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1465 hypothetical protein; hypothetical protein complement(1725685..1726359) Chlorobium limicola DSM 245 6354249 YP_001943625.1 CDS Clim_1602 NC_010803.1 1726428 1729841 R PFAM: Patatin; KEGG: sus:Acid_5056 patatin; patatin complement(1726428..1729841) Chlorobium limicola DSM 245 6354250 YP_001943626.1 CDS Clim_1603 NC_010803.1 1730015 1731499 R PFAM: amino acid permease-associated region; KEGG: cte:CT0923 amino acid permease; amino acid permease-associated protein complement(1730015..1731499) Chlorobium limicola DSM 245 6354251 YP_001943627.1 CDS Clim_1604 NC_010803.1 1731624 1734293 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cph:Cpha266_0173 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase complement(1731624..1734293) Chlorobium limicola DSM 245 6354252 YP_001943628.1 CDS Clim_1605 NC_010803.1 1734346 1738002 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: cph:Cpha266_1511 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(1734346..1738002) Chlorobium limicola DSM 245 6354253 YP_001943629.1 CDS Clim_1606 NC_010803.1 1738231 1739469 R KEGG: cph:Cpha266_1051 hypothetical protein; hypothetical protein complement(1738231..1739469) Chlorobium limicola DSM 245 6354254 YP_001943630.1 CDS Clim_1607 NC_010803.1 1739537 1739800 R PFAM: protein of unknown function nitrogen fixation; KEGG: pth:PTH_2367 hypothetical protein; hypothetical protein complement(1739537..1739800) Chlorobium limicola DSM 245 6354255 YP_001943631.1 CDS Clim_1608 NC_010803.1 1739902 1740660 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: cte:CT0920 7-alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase SDR complement(1739902..1740660) Chlorobium limicola DSM 245 6354256 YP_001943632.1 CDS Clim_1609 NC_010803.1 1740687 1741529 R PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1049 glycosyl transferase, family 2; family 2 glycosyl transferase complement(1740687..1741529) Chlorobium limicola DSM 245 6354257 YP_001943633.1 CDS Clim_1610 NC_010803.1 1741568 1742794 R PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_1048 pentapeptide repeat protein; pentapeptide repeat-containing protein complement(1741568..1742794) Chlorobium limicola DSM 245 6354832 YP_001943634.1 CDS Clim_1611 NC_010803.1 1742784 1744091 R KEGG: cph:Cpha266_1047 hypothetical protein; hypothetical protein complement(1742784..1744091) Chlorobium limicola DSM 245 6354833 YP_001943635.1 CDS Clim_1612 NC_010803.1 1744097 1744489 R KEGG: cph:Cpha266_1046 hypothetical protein; hypothetical protein complement(1744097..1744489) Chlorobium limicola DSM 245 6354486 YP_001943636.1 CDS Clim_1613 NC_010803.1 1744592 1747717 R PFAM: acriflavin resistance protein; KEGG: cph:Cpha266_1045 acriflavin resistance protein; acriflavin resistance protein complement(1744592..1747717) Chlorobium limicola DSM 245 6354487 YP_001943637.1 CDS Clim_1614 NC_010803.1 1747714 1748790 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cph:Cpha266_1044 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1747714..1748790) Chlorobium limicola DSM 245 6354488 YP_001943638.1 CDS Clim_1615 NC_010803.1 1748989 1749720 R KEGG: cph:Cpha266_1043 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU complement(1748989..1749720) Chlorobium limicola DSM 245 6354489 YP_001943639.1 CDS Clim_1616 NC_010803.1 1749848 1750534 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pvi:Cvib_0993 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU complement(1749848..1750534) Chlorobium limicola DSM 245 6354490 YP_001943640.1 CDS Clim_1617 NC_010803.1 1750554 1751408 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein complement(1750554..1751408) Chlorobium limicola DSM 245 6355803 YP_001943641.1 CDS Clim_1618 NC_010803.1 1751421 1752767 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_1040 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease complement(1751421..1752767) Chlorobium limicola DSM 245 6355804 YP_001943642.1 CDS Clim_1619 NC_010803.1 1752814 1753980 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: plt:Plut_1244 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter permease complement(1752814..1753980) Chlorobium limicola DSM 245 6355805 YP_001943643.1 CDS Clim_1620 NC_010803.1 1754187 1755005 R TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cph:Cpha266_1038 phosphate binding protein; phosphate binding protein complement(1754187..1755005) Chlorobium limicola DSM 245 6355806 YP_001943644.1 CDS Clim_1621 NC_010803.1 1755154 1756026 R TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cph:Cpha266_1037 phosphate binding protein; phosphate binding protein complement(1755154..1756026) Chlorobium limicola DSM 245 6355807 YP_001943645.1 CDS Clim_1622 NC_010803.1 1756124 1757359 R KEGG: cph:Cpha266_1036 hypothetical protein; hypothetical protein complement(1756124..1757359) Chlorobium limicola DSM 245 6355808 YP_001943646.1 CDS Clim_1623 NC_010803.1 1757487 1757747 R KEGG: pvi:Cvib_1000 hypothetical protein; hypothetical protein complement(1757487..1757747) Chlorobium limicola DSM 245 6355809 YP_001943647.1 CDS Clim_1624 NC_010803.1 1758230 1758898 R PFAM: GCN5-related N-acetyltransferase; KEGG: cph:Cpha266_1034 hypothetical protein; N-acetyltransferase GCN5 complement(1758230..1758898) Chlorobium limicola DSM 245 6355810 YP_001943648.1 CDS Clim_1625 NC_010803.1 1758939 1759727 R PFAM: phospholipid/glycerol acyltransferase; KEGG: pvi:Cvib_1002 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(1758939..1759727) Chlorobium limicola DSM 245 6355811 YP_001943649.1 CDS Clim_1626 NC_010803.1 1759909 1761366 D KEGG: amt:Amet_0696 anion transporter; hypothetical protein 1759909..1761366 Chlorobium limicola DSM 245 6355812 YP_001943650.1 CDS Clim_1627 NC_010803.1 1761397 1762608 R PFAM: permease YjgP/YjgQ family protein; KEGG: cph:Cpha266_0940 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease complement(1761397..1762608) Chlorobium limicola DSM 245 6355813 YP_001943651.1 CDS Clim_1628 NC_010803.1 1762756 1762881 R hypothetical protein complement(1762756..1762881) Chlorobium limicola DSM 245 6355814 YP_001943652.1 CDS secG NC_010803.1 1763141 1763500 R TIGRFAM: preprotein translocase, SecG subunit; KEGG: cph:Cpha266_0931 preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(1763141..1763500) Chlorobium limicola DSM 245 6355816 YP_001943653.1 CDS Clim_1630 NC_010803.1 1763588 1763830 D KEGG: cph:Cpha266_0930 hypothetical protein; hypothetical protein 1763588..1763830 Chlorobium limicola DSM 245 6354940 YP_001943654.1 CDS hisB NC_010803.1 1763837 1764439 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 1763837..1764439 Chlorobium limicola DSM 245 6353933 YP_001943655.1 CDS Clim_1632 NC_010803.1 1764572 1766146 R protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase complement(1764572..1766146) Chlorobium limicola DSM 245 6353934 YP_001943656.1 CDS Clim_1633 NC_010803.1 1766457 1766723 R KEGG: cph:Cpha266_0927 hypothetical protein; hypothetical protein complement(1766457..1766723) Chlorobium limicola DSM 245 6353935 YP_001943657.1 CDS Clim_1634 NC_010803.1 1766733 1767026 R KEGG: cph:Cpha266_0926 hypothetical protein; hypothetical protein complement(1766733..1767026) Chlorobium limicola DSM 245 6353936 YP_001943658.1 CDS pheT NC_010803.1 1767040 1769454 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1767040..1769454) Chlorobium limicola DSM 245 6353937 YP_001943659.1 CDS Clim_1637 NC_010803.1 1771535 1774681 R PFAM: acriflavin resistance protein; KEGG: plt:Plut_0709 RND family efflux transporter; acriflavin resistance protein complement(1771535..1774681) Chlorobium limicola DSM 245 6353943 YP_001943660.1 CDS Clim_1638 NC_010803.1 1774734 1775855 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: plt:Plut_0708 secretion protein HlyD; RND family efflux transporter MFP subunit complement(1774734..1775855) Chlorobium limicola DSM 245 6353944 YP_001943661.1 CDS Clim_1639 NC_010803.1 1775904 1776287 R PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0924 NUDIX hydrolase; NUDIX hydrolase complement(1775904..1776287) Chlorobium limicola DSM 245 6353945 YP_001943662.1 CDS Clim_1640 NC_010803.1 1776471 1777448 D PFAM: Nucleotidyl transferase; KEGG: pvi:Cvib_1120 nucleotidyl transferase; nucleotidyl transferase 1776471..1777448 Chlorobium limicola DSM 245 6353946 YP_001943663.1 CDS Clim_1641 NC_010803.1 1777694 1778908 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1777694..1778908 Chlorobium limicola DSM 245 6353947 YP_001943664.1 CDS Clim_1642 NC_010803.1 1779016 1780431 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 1779016..1780431 Chlorobium limicola DSM 245 6353948 YP_001943665.1 CDS Clim_1643 NC_010803.1 1780745 1781425 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: cph:Cpha266_0920 phosphoribosylanthranilate isomerase; Phosphoribosylanthranilate isomerase 1780745..1781425 Chlorobium limicola DSM 245 6353950 YP_001943666.1 CDS Clim_1644 NC_010803.1 1781432 1782388 R PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_0919 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1781432..1782388) Chlorobium limicola DSM 245 6353951 YP_001943667.1 CDS Clim_1645 NC_010803.1 1782509 1784269 R PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: cph:Cpha266_0917 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(1782509..1784269) Chlorobium limicola DSM 245 6353952 YP_001943668.1 CDS Clim_1646 NC_010803.1 1784439 1784936 R PFAM: Rubrerythrin; KEGG: cph:Cpha266_0916 rubrerythrin; rubrerythrin complement(1784439..1784936) Chlorobium limicola DSM 245 6353953 YP_001943669.1 CDS Clim_1647 NC_010803.1 1785066 1785866 R KEGG: cph:Cpha266_0915 hypothetical protein; hypothetical protein complement(1785066..1785866) Chlorobium limicola DSM 245 6353954 YP_001943670.1 CDS Clim_1648 NC_010803.1 1786023 1787729 D TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: plt:Plut_0667 sulphate anion transporter; sulfate transporter 1786023..1787729 Chlorobium limicola DSM 245 6353955 YP_001943671.1 CDS Clim_1649 NC_010803.1 1787822 1788079 R KEGG: cph:Cpha266_0912 hypothetical protein; hypothetical protein complement(1787822..1788079) Chlorobium limicola DSM 245 6353956 YP_001943672.1 CDS Clim_1650 NC_010803.1 1788228 1788680 D TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: cph:Cpha266_0911 nitrogenase-associated protein; nitrogenase-associated protein 1788228..1788680 Chlorobium limicola DSM 245 6353957 YP_001943673.1 CDS Clim_1651 NC_010803.1 1788684 1788992 D KEGG: cph:Cpha266_0910 hypothetical protein; hypothetical protein 1788684..1788992 Chlorobium limicola DSM 245 6353958 YP_001943674.1 CDS Clim_1652 NC_010803.1 1789134 1789541 D PFAM: TspO/MBR family protein; KEGG: plt:Plut_0665 CrtK protein; TspO and MBR-like protein 1789134..1789541 Chlorobium limicola DSM 245 6353959 YP_001943675.1 CDS Clim_1653 NC_010803.1 1789575 1790018 D KEGG: cte:CT0707 hypothetical protein; hypothetical protein 1789575..1790018 Chlorobium limicola DSM 245 6353960 YP_001943676.1 CDS Clim_1654 NC_010803.1 1790082 1791185 R KEGG: plt:Plut_0663 alanine dehydrogenase and pyridine nucleotide transhydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; alanine dehydrogenase complement(1790082..1791185) Chlorobium limicola DSM 245 6353961 YP_001943677.1 CDS Clim_1655 NC_010803.1 1791358 1791630 D KEGG: cph:Cpha266_0905 hypothetical protein; hypothetical protein 1791358..1791630 Chlorobium limicola DSM 245 6353962 YP_001943678.1 CDS Clim_1656 NC_010803.1 1791702 1792631 R KEGG: cph:Cpha266_1839 hypothetical protein; hypothetical protein complement(1791702..1792631) Chlorobium limicola DSM 245 6353963 YP_001943679.1 CDS Clim_1657 NC_010803.1 1792637 1793371 R PFAM: protein of unknown function DUF45; KEGG: cph:Cpha266_0904 protein of unknown function DUF45; hypothetical protein complement(1792637..1793371) Chlorobium limicola DSM 245 6353964 YP_001943680.1 CDS Clim_1658 NC_010803.1 1793381 1794373 R PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1842 secretion protein HlyD family protein; secretion protein HlyD family protein complement(1793381..1794373) Chlorobium limicola DSM 245 6353965 YP_001943681.1 CDS Clim_1659 NC_010803.1 1794370 1797411 R KEGG: cph:Cpha266_1843 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters; TIGRFAM: type I secretion system ATPase; PFAM: cyclic nucleotide-binding; ABC transporter transmembrane region; ABC transporter; peptidase C39 bacteriocin processing; SMART: AAA ATPase; cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter complement(1794370..1797411) Chlorobium limicola DSM 245 6353966 YP_001943682.1 CDS Clim_1660 NC_010803.1 1797502 1798215 R KEGG: cph:Cpha266_1844 hypothetical protein; hypothetical protein complement(1797502..1798215) Chlorobium limicola DSM 245 6353967 YP_001943683.1 CDS Clim_1662 NC_010803.1 1799941 1817961 R PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: lpf:lpl0681 structural toxin protein RtxA; von Willebrand factor type A complement(1799941..1817961) Chlorobium limicola DSM 245 6353969 YP_001943684.1 CDS Clim_1663 NC_010803.1 1818580 1821054 R PFAM: Hemolysin-type calcium-binding region; KEGG: ana:alr7304 similar to hlyA; hemolysin-type calcium-binding protein complement(1818580..1821054) Chlorobium limicola DSM 245 6353970 YP_001943685.1 CDS Clim_1664 NC_010803.1 1821416 1822816 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1845 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein complement(1821416..1822816) Chlorobium limicola DSM 245 6353971 YP_001943686.1 CDS Clim_1665 NC_010803.1 1822862 1831339 R TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: lpf:lpl0681 structural toxin protein RtxA; outer membrane adhesin-like protein complement(1822862..1831339) Chlorobium limicola DSM 245 6353972 YP_001943687.1 CDS Clim_1666 NC_010803.1 1831904 1832335 D PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cph:Cpha266_1847 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; hypothetical protein 1831904..1832335 Chlorobium limicola DSM 245 6353973 YP_001943688.1 CDS Clim_1667 NC_010803.1 1832317 1833282 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_1848 radical SAM domain protein; radical SAM protein complement(1832317..1833282) Chlorobium limicola DSM 245 6353974 YP_001943689.1 CDS Clim_1668 NC_010803.1 1833288 1834634 R PFAM: PUCC protein; KEGG: cph:Cpha266_1849 PucC protein; PUCC protein complement(1833288..1834634) Chlorobium limicola DSM 245 6353975 YP_001943690.1 CDS Clim_1669 NC_010803.1 1835038 1836720 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 1835038..1836720 Chlorobium limicola DSM 245 6353976 YP_001943691.1 CDS tpiA NC_010803.1 1837052 1837807 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(1837052..1837807) Chlorobium limicola DSM 245 6353977 YP_001943692.1 CDS Clim_1671 NC_010803.1 1837811 1838035 R KEGG: cph:Cpha266_1853 hypothetical protein; hypothetical protein complement(1837811..1838035) Chlorobium limicola DSM 245 6353978 YP_001943693.1 CDS greA NC_010803.1 1838221 1838700 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1838221..1838700) Chlorobium limicola DSM 245 6353979 YP_001943694.1 CDS Clim_1673 NC_010803.1 1838877 1840394 R KEGG: cph:Cpha266_1855 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(1838877..1840394) Chlorobium limicola DSM 245 6353980 YP_001943695.1 CDS Clim_1674 NC_010803.1 1840421 1841911 R KEGG: pvi:Cvib_1279 anthranilate synthase, component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; anthranilate synthase component I complement(1840421..1841911) Chlorobium limicola DSM 245 6353981 YP_001943696.1 CDS Clim_1675 NC_010803.1 1842025 1842447 D KEGG: cph:Cpha266_1857 hypothetical protein; hypothetical protein 1842025..1842447 Chlorobium limicola DSM 245 6353982 YP_001943697.1 CDS Clim_1676 NC_010803.1 1842441 1843271 R KEGG: cph:Cpha266_1858 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I complement(1842441..1843271) Chlorobium limicola DSM 245 6353983 YP_001943698.1 CDS Clim_1677 NC_010803.1 1843762 1845579 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1843762..1845579) Chlorobium limicola DSM 245 6353984 YP_001943699.1 CDS Clim_1678 NC_010803.1 1845652 1846608 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: cph:Cpha266_1860 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(1845652..1846608) Chlorobium limicola DSM 245 6353985 YP_001943700.1 CDS Clim_1679 NC_010803.1 1846664 1847221 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1846664..1847221) Chlorobium limicola DSM 245 6353986 YP_001943701.1 CDS Clim_1680 NC_010803.1 1847537 1848040 D PFAM: ferric-uptake regulator; KEGG: cph:Cpha266_0314 ferric uptake regulator, Fur family; Fur family ferric uptake regulator 1847537..1848040 Chlorobium limicola DSM 245 6353987 YP_001943702.1 CDS Clim_1681 NC_010803.1 1848054 1850252 R PFAM: sodium/hydrogen exchanger; KEGG: cph:Cpha266_1862 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(1848054..1850252) Chlorobium limicola DSM 245 6353988 YP_001943703.1 CDS Clim_1682 NC_010803.1 1850405 1850539 D hypothetical protein 1850405..1850539 Chlorobium limicola DSM 245 6353989 YP_001943704.1 CDS Clim_1683 NC_010803.1 1850622 1851701 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1850622..1851701 Chlorobium limicola DSM 245 6353990 YP_001943705.1 CDS proA NC_010803.1 1851740 1852996 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1851740..1852996 Chlorobium limicola DSM 245 6353991 YP_001943706.1 CDS Clim_1685 NC_010803.1 1853000 1853713 D PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_1866 ABC transporter; ABC transporter 1853000..1853713 Chlorobium limicola DSM 245 6353992 YP_001943707.1 CDS Clim_1686 NC_010803.1 1853679 1855043 D PFAM: major facilitator superfamily MFS_1; KEGG: cph:Cpha266_1867 major facilitator superfamily MFS_1; major facilitator superfamily protein 1853679..1855043 Chlorobium limicola DSM 245 6353993 YP_001943708.1 CDS Clim_1687 NC_010803.1 1855091 1856209 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cph:Cpha266_1868 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(1855091..1856209) Chlorobium limicola DSM 245 6353994 YP_001943709.1 CDS Clim_1688 NC_010803.1 1856470 1857894 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cph:Cpha266_1869 UDP-N-acetylmuramate--L-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 1856470..1857894 Chlorobium limicola DSM 245 6353995 YP_001943710.1 CDS Clim_1689 NC_010803.1 1858016 1859020 D KEGG: cph:Cpha266_1870 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 1858016..1859020 Chlorobium limicola DSM 245 6353996 YP_001943711.1 CDS Clim_1690 NC_010803.1 1859299 1859925 D PFAM: Proto-chlorophyllide reductase 57 kD subunit; KEGG: cph:Cpha266_1871 Proto-chlorophyllide reductase 57 kD subunit; proto-chlorophyllide reductase 57 kD subunit 1859299..1859925 Chlorobium limicola DSM 245 6353997 YP_001943712.1 CDS Clim_1691 NC_010803.1 1859992 1861197 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(1859992..1861197) Chlorobium limicola DSM 245 6353998 YP_001943713.1 CDS Clim_1692 NC_010803.1 1861262 1861891 R PFAM: GrpE protein; KEGG: cph:Cpha266_1873 GrpE protein; GrpE protein HSP-70 cofactor complement(1861262..1861891) Chlorobium limicola DSM 245 6353999 YP_001943714.1 CDS Clim_1693 NC_010803.1 1861906 1862979 R TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: cph:Cpha266_1874 heat-inducible transcription repressor HrcA; heat-inducible transcription repressor HrcA complement(1861906..1862979) Chlorobium limicola DSM 245 6354000 YP_001943715.1 CDS Clim_1694 NC_010803.1 1863086 1863976 R TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; KEGG: cph:Cpha266_1875 modification methylase, HemK family; protein-(glutamine-N5) methyltransferase complement(1863086..1863976) Chlorobium limicola DSM 245 6354001 YP_001943716.1 CDS Clim_1695 NC_010803.1 1864156 1864896 D KEGG: cph:Cpha266_1876 hypothetical protein; hypothetical protein 1864156..1864896 Chlorobium limicola DSM 245 6354002 YP_001943717.1 CDS Clim_1696 NC_010803.1 1864949 1866394 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1864949..1866394 Chlorobium limicola DSM 245 6354003 YP_001943718.1 CDS Clim_1697 NC_010803.1 1866478 1867065 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cph:Cpha266_1878 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase complement(1866478..1867065) Chlorobium limicola DSM 245 6354004 YP_001943719.1 CDS Clim_1698 NC_010803.1 1867275 1868576 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: cph:Cpha266_1882 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 1867275..1868576 Chlorobium limicola DSM 245 6354005 YP_001943720.1 CDS Clim_1699 NC_010803.1 1868589 1869449 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: plt:Plut_1495 carbon-nitrogen hydrolase family protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1868589..1869449 Chlorobium limicola DSM 245 6354006 YP_001943721.1 CDS Clim_1700 NC_010803.1 1869454 1870320 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(1869454..1870320) Chlorobium limicola DSM 245 6354007 YP_001943722.1 CDS Clim_1701 NC_010803.1 1870434 1871138 D PFAM: Sporulation domain protein; KEGG: cte:CT1496 hypothetical protein; sporulation domain-containing protein 1870434..1871138 Chlorobium limicola DSM 245 6354008 YP_001943723.1 CDS Clim_1702 NC_010803.1 1871170 1872330 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cph:Cpha266_1886 sigma54 specific Fis family transcriptional regulator; Fis family transcriptional regulator 1871170..1872330 Chlorobium limicola DSM 245 6354009 YP_001943724.1 CDS Clim_1703 NC_010803.1 1872366 1874003 R TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cph:Cpha266_1887 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase complement(1872366..1874003) Chlorobium limicola DSM 245 6354010 YP_001943725.1 CDS Clim_1704 NC_010803.1 1874215 1875315 D PFAM: bacteriochlorophyll A protein; KEGG: cph:Cpha266_1888 bacteriochlorophyll A protein; bacteriochlorophyll A protein 1874215..1875315 Chlorobium limicola DSM 245 6354011 YP_001943726.1 CDS Clim_1705 NC_010803.1 1875452 1875853 R PFAM: regulatory protein MerR; KEGG: cch:Cag_1328 MerR family transcriptional regulator; MerR family transcriptional regulator complement(1875452..1875853) Chlorobium limicola DSM 245 6354012 YP_001943727.1 CDS Clim_1706 NC_010803.1 1876096 1877856 D PFAM: ABC transporter transmembrane region; ABC transporter; SMART: AAA ATPase; KEGG: plt:Plut_1502 ATPase; ABC transporter 1876096..1877856 Chlorobium limicola DSM 245 6354013 YP_001943728.1 CDS purT NC_010803.1 1877842 1879041 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(1877842..1879041) Chlorobium limicola DSM 245 6353769 YP_001943729.1 CDS Clim_1708 NC_010803.1 1879231 1880652 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_1895 radical SAM domain protein; radical SAM protein complement(1879231..1880652) Chlorobium limicola DSM 245 6355786 YP_001943730.1 CDS Clim_1709 NC_010803.1 1880663 1883278 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1880663..1883278) Chlorobium limicola DSM 245 6355787 YP_001943731.1 CDS Clim_1710 NC_010803.1 1883480 1883890 D KEGG: cph:Cpha266_1897 hypothetical protein; hypothetical protein 1883480..1883890 Chlorobium limicola DSM 245 6355788 YP_001943732.1 CDS rplU NC_010803.1 1883967 1884266 D PFAM: ribosomal protein L21; KEGG: pvi:Cvib_1329 50S ribosomal protein L21; 50S ribosomal protein L21 1883967..1884266 Chlorobium limicola DSM 245 6355789 YP_001943733.1 CDS rpmA NC_010803.1 1884308 1884562 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1884308..1884562 Chlorobium limicola DSM 245 6355790 YP_001943734.1 CDS Clim_1713 NC_010803.1 1884720 1885652 D Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 1884720..1885652 Chlorobium limicola DSM 245 6355791 YP_001943735.1 CDS Clim_1715 NC_010803.1 1886532 1887581 R PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: cte:CT1508 hypothetical protein; Agmatine deiminase complement(1886532..1887581) Chlorobium limicola DSM 245 6355793 YP_001943736.1 CDS Clim_1716 NC_010803.1 1887593 1888879 R PFAM: peptidase M48 Ste24p; KEGG: cph:Cpha266_1902 STE24 endopeptidase; Ste24 endopeptidase complement(1887593..1888879) Chlorobium limicola DSM 245 6355794 YP_001943737.1 CDS Clim_1717 NC_010803.1 1889002 1889877 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cph:Cpha266_1903 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(1889002..1889877) Chlorobium limicola DSM 245 6355795 YP_001943738.1 CDS Clim_1718 NC_010803.1 1889893 1890801 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(1889893..1890801) Chlorobium limicola DSM 245 6355796 YP_001943739.1 CDS Clim_1719 NC_010803.1 1890791 1891843 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cph:Cpha266_1905 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1890791..1891843) Chlorobium limicola DSM 245 6355797 YP_001943740.1 CDS Clim_1720 NC_010803.1 1891902 1892225 R KEGG: cph:Cpha266_1906 hypothetical protein; hypothetical protein complement(1891902..1892225) Chlorobium limicola DSM 245 6355798 YP_001943741.1 CDS Clim_1721 NC_010803.1 1892487 1893242 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1892487..1893242 Chlorobium limicola DSM 245 6355799 YP_001943742.1 CDS Clim_1722 NC_010803.1 1893251 1894099 R PFAM: protein of unknown function zinc metallopeptidase KEGG: esi:Exig_0173 protein of unknown function zinc metallopeptidase; hypothetical protein complement(1893251..1894099) Chlorobium limicola DSM 245 6355800 YP_001943743.1 CDS Clim_1723 NC_010803.1 1894138 1894656 R PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: cph:Cpha266_1910 NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 complement(1894138..1894656) Chlorobium limicola DSM 245 6355801 YP_001943744.1 CDS Clim_1724 NC_010803.1 1894784 1895278 D PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1911 uncharacterized protein UPF0114; hypothetical protein 1894784..1895278 Chlorobium limicola DSM 245 6355802 YP_001943745.1 CDS Clim_1725 NC_010803.1 1895298 1896416 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: plt:Plut_1521 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA complement(1895298..1896416) Chlorobium limicola DSM 245 6354553 YP_001943746.1 CDS Clim_1726 NC_010803.1 1896804 1897064 R KEGG: cch:Cag_1724 hypothetical protein; hypothetical protein complement(1896804..1897064) Chlorobium limicola DSM 245 6354554 YP_001943747.1 CDS Clim_1727 NC_010803.1 1897441 1898922 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cph:Cpha266_0673 alpha amylase, catalytic region; alpha amylase 1897441..1898922 Chlorobium limicola DSM 245 6354555 YP_001943748.1 CDS Clim_1728 NC_010803.1 1898919 1899344 D PFAM: protein of unknown function UPF0047; KEGG: pvi:Cvib_0499 protein of unknown function UPF0047; hypothetical protein 1898919..1899344 Chlorobium limicola DSM 245 6354556 YP_001943749.1 CDS Clim_1729 NC_010803.1 1899430 1901361 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1899430..1901361 Chlorobium limicola DSM 245 6354557 YP_001943750.1 CDS Clim_1730 NC_010803.1 1901340 1901816 R PFAM: phosphatidylglycerophosphatase A; KEGG: cph:Cpha266_0670 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase A complement(1901340..1901816) Chlorobium limicola DSM 245 6354558 YP_001943751.1 CDS Clim_1731 NC_010803.1 1901820 1902416 R TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cph:Cpha266_0669 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase complement(1901820..1902416) Chlorobium limicola DSM 245 6354559 YP_001943752.1 CDS Clim_1732 NC_010803.1 1902579 1904969 R PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; KEGG: cph:Cpha266_0668 Smr protein/MutS2; Smr protein/MutS2 complement(1902579..1904969) Chlorobium limicola DSM 245 6354560 YP_001943753.1 CDS Clim_1733 NC_010803.1 1905094 1905888 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1905094..1905888 Chlorobium limicola DSM 245 6354561 YP_001943754.1 CDS Clim_1734 NC_010803.1 1905885 1906577 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 1905885..1906577 Chlorobium limicola DSM 245 6354562 YP_001943755.1 CDS Clim_1735 NC_010803.1 1906598 1907449 D phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1906598..1907449 Chlorobium limicola DSM 245 6354563 YP_001943756.1 CDS Clim_1736 NC_010803.1 1907879 1908739 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cph:Cpha266_0664 PHP C-terminal domain protein; PHP domain-containing protein 1907879..1908739 Chlorobium limicola DSM 245 6354564 YP_001943757.1 CDS Clim_1737 NC_010803.1 1908841 1909635 D PFAM: protein of unknown function DUF140; KEGG: pvi:Cvib_0490 protein of unknown function DUF140; hypothetical protein 1908841..1909635 Chlorobium limicola DSM 245 6354565 YP_001943758.1 CDS Clim_1738 NC_010803.1 1909640 1910374 D PFAM: ABC transporter; SMART: AAA ATPase; KEGG: plt:Plut_0441 ATPase; ABC transporter 1909640..1910374 Chlorobium limicola DSM 245 6354566 YP_001943759.1 CDS Clim_1739 NC_010803.1 1910399 1911277 D PFAM: Mammalian cell entry related domain protein; KEGG: cph:Cpha266_0661 mammalian cell entry related domain protein; mammalian cell entry domain-containing protein 1910399..1911277 Chlorobium limicola DSM 245 6354567 YP_001943760.1 CDS Clim_1740 NC_010803.1 1911288 1912427 D PFAM: beta-lactamase; KEGG: cph:Cpha266_0660 beta-lactamase; beta-lactamase 1911288..1912427 Chlorobium limicola DSM 245 6354568 YP_001943761.1 CDS Clim_1741 NC_010803.1 1912460 1913797 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mgm:Mmc1_3600 two component, sigma54 specific, transcriptional regulator, fis family; two component sigma-54 specific Fis family transcriptional regulator 1912460..1913797 Chlorobium limicola DSM 245 6354569 YP_001943762.1 CDS Clim_1742 NC_010803.1 1914026 1915852 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: mgm:Mmc1_3601 periplasmic sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 1914026..1915852 Chlorobium limicola DSM 245 6354570 YP_001943763.1 CDS Clim_1743 NC_010803.1 1916086 1917756 D KEGG: pla:Plav_1014 potassium-transporting ATPase, A subunit; TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K transporting ATPase A subunit; potassium-transporting ATPase subunit A 1916086..1917756 Chlorobium limicola DSM 245 6354571 YP_001943764.1 CDS Clim_1744 NC_010803.1 1917761 1919878 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dge:Dgeo_2849 potassium-translocating P-type ATPase, B subunit; K+-transporting ATPase subunit B 1917761..1919878 Chlorobium limicola DSM 245 6354572 YP_001943765.1 CDS Clim_1745 NC_010803.1 1919897 1920484 D PFAM: K transporting ATPase KdpC subunit; KEGG: pla:Plav_1015 potassium-transporting ATPase; Potassium-transporting ATPase 1919897..1920484 Chlorobium limicola DSM 245 6354573 YP_001943766.1 CDS Clim_1746 NC_010803.1 1920523 1922184 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; Osmosensitive K channel His kinase sensor; KEGG: sfu:Sfum_2617 osmosensitive K+ channel His kinase sensor; osmosensitive K channel His kinase sensor 1920523..1922184 Chlorobium limicola DSM 245 6354574 YP_001943767.1 CDS Clim_1747 NC_010803.1 1922261 1924189 R PFAM: amine oxidase; Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cph:Cpha266_0659 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(1922261..1924189) Chlorobium limicola DSM 245 6354575 YP_001943768.1 CDS Clim_1748 NC_010803.1 1924317 1925324 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: cph:Cpha266_0658 domain of unknown function DUF1730; hypothetical protein 1924317..1925324 Chlorobium limicola DSM 245 6354576 YP_001943769.1 CDS purH NC_010803.1 1925445 1927022 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(1925445..1927022) Chlorobium limicola DSM 245 6354577 YP_001943770.1 CDS Clim_1750 NC_010803.1 1927216 1927989 R PFAM: N-acetyltransferase; KEGG: cph:Cpha266_1973 N-acetyltransferase; N-acetyltransferase complement(1927216..1927989) Chlorobium limicola DSM 245 6354578 YP_001943771.1 CDS Clim_1751 NC_010803.1 1928042 1928464 R KEGG: cph:Cpha266_1695 hypothetical protein; hypothetical protein complement(1928042..1928464) Chlorobium limicola DSM 245 6354579 YP_001943772.1 CDS Clim_1752 NC_010803.1 1928497 1929147 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_1144 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase complement(1928497..1929147) Chlorobium limicola DSM 245 6354580 YP_001943773.1 CDS Clim_1753 NC_010803.1 1929632 1930159 D KEGG: cph:Cpha266_1559 hypothetical protein; hypothetical protein 1929632..1930159 Chlorobium limicola DSM 245 6354581 YP_001943774.1 CDS Clim_1754 NC_010803.1 1930279 1930920 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rci:RRC139 lysine exporter (LysE family); lysine exporter protein LysE/YggA complement(1930279..1930920) Chlorobium limicola DSM 245 6354582 YP_001943775.1 CDS Clim_1755 NC_010803.1 1931458 1932048 D KEGG: cph:Cpha266_1224 hypothetical protein; hypothetical protein 1931458..1932048 Chlorobium limicola DSM 245 6354583 YP_001943776.1 CDS Clim_1756 NC_010803.1 1932393 1933070 R PFAM: PDZ/DHR/GLGF domain protein; KEGG: esi:Exig_2418 carboxyl-terminal protease; PDZ/DHR/GLGF domain-containing protein complement(1932393..1933070) Chlorobium limicola DSM 245 6354584 YP_001943777.1 CDS Clim_1757 NC_010803.1 1933261 1933386 R KEGG: net:Neut_2361 transposase, mutator type; transposase, mutator type complement(1933261..1933386) Chlorobium limicola DSM 245 6354585 YP_001943778.1 CDS Clim_1759 NC_010803.1 1934286 1934579 D PFAM: transposase IS3/IS911 family protein; KEGG: cph:Cpha266_2113 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1934286..1934579 Chlorobium limicola DSM 245 6354587 YP_001943779.1 CDS Clim_1760 NC_010803.1 1934576 1935499 D PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region; integrase catalytic subunit 1934576..1935499 Chlorobium limicola DSM 245 6354588 YP_001943780.1 CDS Clim_1762 NC_010803.1 1936919 1937350 R KEGG: spl:Spea_0729 hypothetical protein; hypothetical protein complement(1936919..1937350) Chlorobium limicola DSM 245 6354590 YP_001943781.1 CDS Clim_1763 NC_010803.1 1937624 1939171 R KEGG: bth:BT_2774 adenylate cyclase; hypothetical protein complement(1937624..1939171) Chlorobium limicola DSM 245 6354591 YP_001943782.1 CDS Clim_1764 NC_010803.1 1939449 1940609 D KEGG: plt:Plut_1921 ATPase (AAA+ superfamily)-like; ATPase (AAA+ superfamily)-like protein 1939449..1940609 Chlorobium limicola DSM 245 6354592 YP_001943783.1 CDS Clim_1765 NC_010803.1 1940987 1941601 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: cch:Cag_0504 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 1940987..1941601 Chlorobium limicola DSM 245 6354593 YP_001943784.1 CDS Clim_1766 NC_010803.1 1941598 1942260 D PFAM: Radical SAM domain protein; KEGG: cph:Cpha266_1979 radical SAM domain protein; radical SAM protein 1941598..1942260 Chlorobium limicola DSM 245 6354594 YP_001943785.1 CDS Clim_1767 NC_010803.1 1942503 1943498 D PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1980 glycosyl transferase, family 2; family 2 glycosyl transferase 1942503..1943498 Chlorobium limicola DSM 245 6354595 YP_001943786.1 CDS Clim_1768 NC_010803.1 1943600 1944472 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 1943600..1944472 Chlorobium limicola DSM 245 6354596 YP_001943787.1 CDS Clim_1769 NC_010803.1 1944447 1945331 R PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1982 cell division protein FtsX; hypothetical protein complement(1944447..1945331) Chlorobium limicola DSM 245 6354597 YP_001943788.1 CDS Clim_1770 NC_010803.1 1945665 1946183 R KEGG: cph:Cpha266_1983 hypothetical protein; hypothetical protein complement(1945665..1946183) Chlorobium limicola DSM 245 6354599 YP_001943789.1 CDS Clim_1771 NC_010803.1 1946440 1947933 D TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: cph:Cpha266_1989 amidophosphoribosyltransferase; amidophosphoribosyltransferase 1946440..1947933 Chlorobium limicola DSM 245 6354600 YP_001943790.1 CDS Clim_1772 NC_010803.1 1948020 1948454 R KEGG: plt:Plut_0424 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator complement(1948020..1948454) Chlorobium limicola DSM 245 6354601 YP_001943791.1 CDS ileS NC_010803.1 1948515 1951769 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase complement(1948515..1951769) Chlorobium limicola DSM 245 6354602 YP_001943792.1 CDS Clim_1774 NC_010803.1 1951928 1952143 R KEGG: plt:Plut_0422 hypothetical protein; hypothetical protein complement(1951928..1952143) Chlorobium limicola DSM 245 6354603 YP_001943793.1 CDS Clim_1775 NC_010803.1 1952282 1953736 R KEGG: plt:Plut_0421 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(1952282..1953736) Chlorobium limicola DSM 245 6354604 YP_001943794.1 CDS Clim_1776 NC_010803.1 1953783 1954775 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cph:Cpha266_1993 UDP-galactose 4-epimerase; UDP-glucose 4-epimerase complement(1953783..1954775) Chlorobium limicola DSM 245 6354605 YP_001943795.1 CDS Clim_1777 NC_010803.1 1954825 1955268 R KEGG: cph:Cpha266_1994 hypothetical protein; hypothetical protein complement(1954825..1955268) Chlorobium limicola DSM 245 6354606 YP_001943796.1 CDS Clim_1778 NC_010803.1 1955563 1956612 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cph:Cpha266_1995 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(1955563..1956612) Chlorobium limicola DSM 245 6354607 YP_001943797.1 CDS Clim_1779 NC_010803.1 1956627 1957520 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cph:Cpha266_1996 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(1956627..1957520) Chlorobium limicola DSM 245 6354608 YP_001943798.1 CDS Clim_1780 NC_010803.1 1957520 1958098 R KEGG: cch:Cag_0514 dTDP-4-dehydrorhamnose 3,5-epimerase related; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(1957520..1958098) Chlorobium limicola DSM 245 6354609 YP_001943799.1 CDS Clim_1781 NC_010803.1 1958167 1959063 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cph:Cpha266_1998 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(1958167..1959063) Chlorobium limicola DSM 245 6354610 YP_001943800.1 CDS Clim_1782 NC_010803.1 1959211 1960254 R TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cph:Cpha266_0725 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE complement(1959211..1960254) Chlorobium limicola DSM 245 6354611 YP_001943801.1 CDS Clim_1783 NC_010803.1 1960251 1961348 R TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: cph:Cpha266_0724 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD complement(1960251..1961348) Chlorobium limicola DSM 245 6354612 YP_001943802.1 CDS Clim_1784 NC_010803.1 1961345 1961629 R TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: cte:CT1795 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF complement(1961345..1961629) Chlorobium limicola DSM 245 6354613 YP_001943803.1 CDS Clim_1785 NC_010803.1 1961924 1964218 R TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: cph:Cpha266_0722 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF complement(1961924..1964218) Chlorobium limicola DSM 245 6354614 YP_001943804.1 CDS Clim_1786 NC_010803.1 1964224 1965033 R TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cte:CT1798 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB complement(1964224..1965033) Chlorobium limicola DSM 245 6354615 YP_001943805.1 CDS Clim_1787 NC_010803.1 1965038 1965388 R TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: cph:Cpha266_0720 hydrogenase expression/synthesis, HypA; hydrogenase nickel incorporation protein HypA complement(1965038..1965388) Chlorobium limicola DSM 245 6354616 YP_001943806.1 CDS pyrB NC_010803.1 1965516 1966442 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1965516..1966442 Chlorobium limicola DSM 245 6354617 YP_001943807.1 CDS Clim_1789 NC_010803.1 1966453 1967370 D KEGG: cph:Cpha266_0718 hypothetical protein; hypothetical protein 1966453..1967370 Chlorobium limicola DSM 245 6354618 YP_001943808.1 CDS Clim_1790 NC_010803.1 1967444 1967950 R PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0717 NUDIX hydrolase; NUDIX hydrolase complement(1967444..1967950) Chlorobium limicola DSM 245 6354619 YP_001943809.1 CDS Clim_1791 NC_010803.1 1968133 1969383 D PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: cph:Cpha266_0188 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; coenzyme F420 hydrogenase/dehydrogenase subunit beta domain-containing protein 1968133..1969383 Chlorobium limicola DSM 245 6354620 YP_001943810.1 CDS Clim_1792 NC_010803.1 1969617 1970687 D KEGG: cph:Cpha266_0714 hypothetical protein; hypothetical protein 1969617..1970687 Chlorobium limicola DSM 245 6354621 YP_001943811.1 CDS Clim_1793 NC_010803.1 1970945 1971202 D KEGG: plt:Plut_0487 hypothetical protein; hypothetical protein 1970945..1971202 Chlorobium limicola DSM 245 6354622 YP_001943812.1 CDS Clim_1794 NC_010803.1 1971254 1973038 D PFAM: Na+/solute symporter; KEGG: cte:CT1806 sodium:solute symporter family protein; Na+/solute symporter 1971254..1973038 Chlorobium limicola DSM 245 6354623 YP_001943813.1 CDS uvrC NC_010803.1 1973165 1975024 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1973165..1975024 Chlorobium limicola DSM 245 6354624 YP_001943814.1 CDS Clim_1796 NC_010803.1 1975133 1976530 D PFAM: hypothetical protein; Tetratricopeptide TPR_3; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0709 tetratricopeptide TPR_2 repeat protein; hypothetical protein 1975133..1976530 Chlorobium limicola DSM 245 6354625 YP_001943815.1 CDS Clim_1797 NC_010803.1 1976557 1977444 D TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: cph:Cpha266_0708 shikimate dehydrogenase; shikimate 5-dehydrogenase 1976557..1977444 Chlorobium limicola DSM 245 6354626 YP_001943816.1 CDS Clim_1798 NC_010803.1 1977510 1978016 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1977510..1978016 Chlorobium limicola DSM 245 6354627 YP_001943817.1 CDS Clim_1799 NC_010803.1 1978006 1978779 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cph:Cpha266_0706 hydrolase, TatD family; TatD family hydrolase 1978006..1978779 Chlorobium limicola DSM 245 6354628 YP_001943818.1 CDS Clim_1800 NC_010803.1 1978936 1979619 D PFAM: hypothetical protein; KEGG: cph:Cpha266_0705 tetratricopeptide TPR_2 repeat protein; hypothetical protein 1978936..1979619 Chlorobium limicola DSM 245 6354629 YP_001943819.1 CDS Clim_1801 NC_010803.1 1979653 1980144 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cph:Cpha266_0704 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 1979653..1980144 Chlorobium limicola DSM 245 6354630 YP_001943820.1 CDS Clim_1802 NC_010803.1 1980158 1980847 D PFAM: alanine racemase domain protein; KEGG: cph:Cpha266_0703 alanine racemase domain protein; alanine racemase domain-containing protein 1980158..1980847 Chlorobium limicola DSM 245 6354631 YP_001943821.1 CDS Clim_1803 NC_010803.1 1980885 1982135 D PFAM: aminotransferase class I and II; KEGG: aba:Acid345_1458 aminotransferase, class I and II; class I and II aminotransferase 1980885..1982135 Chlorobium limicola DSM 245 6354632 YP_001943822.1 CDS Clim_1804 NC_010803.1 1982151 1982972 D catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 1982151..1982972 Chlorobium limicola DSM 245 6354633 YP_001943823.1 CDS Clim_1805 NC_010803.1 1982994 1984058 D KEGG: plt:Plut_0476 initiation factor 2B alpha/beta/delta; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family 1982994..1984058 Chlorobium limicola DSM 245 6355144 YP_001943824.1 CDS Clim_1806 NC_010803.1 1984280 1985665 D PFAM: cytochrome c oxidase subunit I; KEGG: cch:Cag_1356 cytochrome-cbb3 oxidase, subunit I; cytochrome c oxidase subunit I 1984280..1985665 Chlorobium limicola DSM 245 6355146 YP_001943825.1 CDS Clim_1807 NC_010803.1 1985694 1986365 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 1985694..1986365 Chlorobium limicola DSM 245 6355147 YP_001943826.1 CDS Clim_1808 NC_010803.1 1986362 1986505 D hypothetical protein 1986362..1986505 Chlorobium limicola DSM 245 6355148 YP_001943827.1 CDS Clim_1809 NC_010803.1 1986572 1987033 D PFAM: cytochrome c class I; KEGG: cch:Cag_1358 probable cb-type cytochrome c oxidase subunit III; cytochrome c class I 1986572..1987033 Chlorobium limicola DSM 245 6355149 YP_001943828.1 CDS Clim_1810 NC_010803.1 1987087 1988190 D KEGG: cch:Cag_1359 polyferredoxin-like; polyferredoxin-like protein 1987087..1988190 Chlorobium limicola DSM 245 6355150 YP_001943829.1 CDS Clim_1811 NC_010803.1 1988187 1988624 D KEGG: cch:Cag_1367 hypothetical protein; hypothetical protein 1988187..1988624 Chlorobium limicola DSM 245 6355151 YP_001943830.1 CDS Clim_1812 NC_010803.1 1988603 1989031 D KEGG: cch:Cag_1368 hypothetical protein; hypothetical protein 1988603..1989031 Chlorobium limicola DSM 245 6355152 YP_001943831.1 CDS Clim_1813 NC_010803.1 1989018 1991447 D KEGG: cch:Cag_1369 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase 1989018..1991447 Chlorobium limicola DSM 245 6355153 YP_001943832.1 CDS Clim_1814 NC_010803.1 1991451 1991639 D TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: cch:Cag_1370 cytochrome oxidase maturation protein cbb3-type; cbb3-type cytochrome oxidase maturation protein 1991451..1991639 Chlorobium limicola DSM 245 6355154 YP_001943833.1 CDS Clim_1815 NC_010803.1 1991636 1992322 D KEGG: cch:Cag_1371 hypothetical protein; hypothetical protein 1991636..1992322 Chlorobium limicola DSM 245 6355155 YP_001943834.1 CDS Clim_1816 NC_010803.1 1992499 1993854 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: cph:Cpha266_0700 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 1992499..1993854 Chlorobium limicola DSM 245 6355156 YP_001943835.1 CDS Clim_1817 NC_010803.1 1993872 1994885 D KEGG: cph:Cpha266_0699 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 1993872..1994885 Chlorobium limicola DSM 245 6355157 YP_001943836.1 CDS radC NC_010803.1 1995055 1995723 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 1995055..1995723 Chlorobium limicola DSM 245 6355158 YP_001943837.1 CDS Clim_1819 NC_010803.1 1995889 1996146 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: cph:Cpha266_1762 cold-shock DNA-binding protein family; cold-shock DNA-binding domain-containing protein complement(1995889..1996146) Chlorobium limicola DSM 245 6355159 YP_001943838.1 CDS Clim_1820 NC_010803.1 1996357 1997088 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_1763 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1996357..1997088 Chlorobium limicola DSM 245 6355160 YP_001943839.1 CDS Clim_1821 NC_010803.1 1997085 1997312 D hypothetical protein 1997085..1997312 Chlorobium limicola DSM 245 6355161 YP_001943840.1 CDS Clim_1822 NC_010803.1 1997296 1997754 D KEGG: cch:Cag_0694 hypothetical protein; hypothetical protein 1997296..1997754 Chlorobium limicola DSM 245 6355162 YP_001943841.1 CDS Clim_1823 NC_010803.1 1997774 1999057 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1997774..1999057 Chlorobium limicola DSM 245 6355163 YP_001943842.1 CDS Clim_1824 NC_010803.1 1999279 2000355 R KEGG: cph:Cpha266_1766 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; homoserine O-acetyltransferase complement(1999279..2000355) Chlorobium limicola DSM 245 6355164 YP_001943843.1 CDS Clim_1825 NC_010803.1 2000361 2001653 R KEGG: plt:Plut_0592 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(2000361..2001653) Chlorobium limicola DSM 245 6355165 YP_001943844.1 CDS Clim_1826 NC_010803.1 2001981 2003336 D TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: cph:Cpha266_1768 sun protein; sun protein 2001981..2003336 Chlorobium limicola DSM 245 6355166 YP_001943845.1 CDS Clim_1827 NC_010803.1 2003333 2004253 D TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase; KEGG: cph:Cpha266_1769 tyrosine recombinase XerD; tyrosine recombinase XerD 2003333..2004253 Chlorobium limicola DSM 245 6355167 YP_001943846.1 CDS Clim_1828 NC_010803.1 2004269 2004796 R PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1770 hypothetical protein; hypothetical protein complement(2004269..2004796) Chlorobium limicola DSM 245 6355168 YP_001943847.1 CDS Clim_1829 NC_010803.1 2004975 2005445 R KEGG: cph:Cpha266_1771 hypothetical protein; hypothetical protein complement(2004975..2005445) Chlorobium limicola DSM 245 6355170 YP_001943848.1 CDS Clim_1830 NC_010803.1 2005696 2007084 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: cph:Cpha266_1772 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(2005696..2007084) Chlorobium limicola DSM 245 6355171 YP_001943849.1 CDS Clim_1831 NC_010803.1 2007293 2009350 D KEGG: cph:Cpha266_1834 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 2007293..2009350 Chlorobium limicola DSM 245 6355172 YP_001943850.1 CDS Clim_1832 NC_010803.1 2009347 2010978 D KEGG: cph:Cpha266_1833 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; Stage II sporulation E family protein; PAS fold domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein; PAS/PAC sensor protein 2009347..2010978 Chlorobium limicola DSM 245 6355173 YP_001943851.1 CDS Clim_1833 NC_010803.1 2011028 2012329 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cph:Cpha266_1832 sigma54 specific Fis family transcriptional regulator; Fis family transcriptional regulator 2011028..2012329 Chlorobium limicola DSM 245 6355174 YP_001943852.1 CDS Clim_1834 NC_010803.1 2012750 2014516 D KEGG: cph:Cpha266_1831 N-acetylmannosaminyltransferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase 2012750..2014516 Chlorobium limicola DSM 245 6355175 YP_001943853.1 CDS Clim_1835 NC_010803.1 2014523 2015242 D PFAM: sugar transferase; KEGG: cph:Cpha266_1830 undecaprenyl-phosphate galactose phosphotransferase; undecaprenyl-phosphate galactose phosphotransferase 2014523..2015242 Chlorobium limicola DSM 245 6355176 YP_001943854.1 CDS Clim_1836 NC_010803.1 2015258 2015611 D TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cph:Cpha266_1829 anti-sigma-factor antagonist; anti-sigma-factor antagonist 2015258..2015611 Chlorobium limicola DSM 245 6355177 YP_001943855.1 CDS Clim_1837 NC_010803.1 2015619 2016941 D KEGG: cph:Cpha266_1828 nucleoside-diphosphate-sugar pyrophosphorylase; nucleoside-diphosphate-sugar pyrophosphorylase 2015619..2016941 Chlorobium limicola DSM 245 6355178 YP_001943856.1 CDS Clim_1838 NC_010803.1 2016938 2017285 D TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cph:Cpha266_1827 anti-sigma-factor antagonist; anti-sigma-factor antagonist 2016938..2017285 Chlorobium limicola DSM 245 6355179 YP_001943857.1 CDS Clim_1839 NC_010803.1 2017282 2017704 D KEGG: cph:Cpha266_1826 anti-sigma regulatory factor, serine/threonine protein kinase; anti-sigma regulatory factor, serine/threonine protein kinase 2017282..2017704 Chlorobium limicola DSM 245 6355180 YP_001943858.1 CDS Clim_1840 NC_010803.1 2017709 2018683 D PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1825 glycosyl transferase, family 2; family 2 glycosyl transferase 2017709..2018683 Chlorobium limicola DSM 245 6355181 YP_001943859.1 CDS Clim_1841 NC_010803.1 2018688 2019209 D PFAM: transferase hexapeptide repeat containing protein; KEGG: cph:Cpha266_1824 serine O-acetyltransferase; transferase 2018688..2019209 Chlorobium limicola DSM 245 6355182 YP_001943860.1 CDS Clim_1842 NC_010803.1 2019415 2020554 D PFAM: polysaccharide export protein; KEGG: cph:Cpha266_1823 polysaccharide export protein; polysaccharide export protein 2019415..2020554 Chlorobium limicola DSM 245 6355183 YP_001943861.1 CDS Clim_1843 NC_010803.1 2020551 2022326 D PFAM: polysaccharide biosynthesis protein; KEGG: cph:Cpha266_1820 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 2020551..2022326 Chlorobium limicola DSM 245 6355184 YP_001943862.1 CDS Clim_1844 NC_010803.1 2022323 2024644 D KEGG: cph:Cpha266_1819 uncharacterized protein involved in exopolysaccharide biosynthesis-like; hypothetical protein 2022323..2024644 Chlorobium limicola DSM 245 6355185 YP_001943863.1 CDS Clim_1845 NC_010803.1 2024713 2025207 D KEGG: plt:Plut_1371 serine acetyltransferase-like; serine acetyltransferase-like protein 2024713..2025207 Chlorobium limicola DSM 245 6355186 YP_001943864.1 CDS Clim_1846 NC_010803.1 2025204 2026451 D PFAM: glycosyl transferase group 1; KEGG: plt:Plut_1372 glycosyltransferase-like; group 1 glycosyl transferase 2025204..2026451 Chlorobium limicola DSM 245 6355187 YP_001943865.1 CDS Clim_1847 NC_010803.1 2026444 2027892 D KEGG: cph:Cpha266_1816 hypothetical protein; hypothetical protein 2026444..2027892 Chlorobium limicola DSM 245 6355188 YP_001943866.1 CDS Clim_1848 NC_010803.1 2027929 2028351 D KEGG: cph:Cpha266_1815 hypothetical protein; hypothetical protein 2027929..2028351 Chlorobium limicola DSM 245 6355189 YP_001943867.1 CDS Clim_1849 NC_010803.1 2028387 2029430 D KEGG: cph:Cpha266_0890 hypothetical protein; hypothetical protein 2028387..2029430 Chlorobium limicola DSM 245 6355190 YP_001943868.1 CDS Clim_1850 NC_010803.1 2029939 2031027 D PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1813 glycosyl transferase, family 2; family 2 glycosyl transferase 2029939..2031027 Chlorobium limicola DSM 245 6355191 YP_001943869.1 CDS Clim_1851 NC_010803.1 2031024 2032244 D PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1812 glycosyl transferase, group 1; group 1 glycosyl transferase 2031024..2032244 Chlorobium limicola DSM 245 6355192 YP_001943870.1 CDS Clim_1852 NC_010803.1 2032241 2033434 D PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1811 glycosyl transferase, family 2; family 2 glycosyl transferase 2032241..2033434 Chlorobium limicola DSM 245 6355193 YP_001943871.1 CDS Clim_1853 NC_010803.1 2033439 2034032 D KEGG: plt:Plut_1385 hypothetical protein; hypothetical protein 2033439..2034032 Chlorobium limicola DSM 245 6355194 YP_001943872.1 CDS Clim_1854 NC_010803.1 2034417 2036249 R PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1774 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(2034417..2036249) Chlorobium limicola DSM 245 6355195 YP_001943873.1 CDS Clim_1855 NC_010803.1 2036448 2038451 R PFAM: hypothetical protein; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1566 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(2036448..2038451) Chlorobium limicola DSM 245 6355196 YP_001943874.1 CDS Clim_1856 NC_010803.1 2038751 2039551 R PFAM: Integral membrane protein TerC; KEGG: cph:Cpha266_1776 integral membrane protein TerC; integral membrane protein TerC complement(2038751..2039551) Chlorobium limicola DSM 245 6355197 YP_001943875.1 CDS Clim_1857 NC_010803.1 2039559 2041472 R PFAM: K potassium transporter; KEGG: cph:Cpha266_1777 K+ potassium transporter; K potassium transporter complement(2039559..2041472) Chlorobium limicola DSM 245 6355198 YP_001943876.1 CDS Clim_1858 NC_010803.1 2041759 2042394 D KEGG: ptr:743163 similar to ENSANGP00000001657; hypothetical protein 2041759..2042394 Chlorobium limicola DSM 245 6355199 YP_001943877.1 CDS Clim_1859 NC_010803.1 2042769 2043239 D KEGG: cph:Cpha266_0597 hypothetical protein; hypothetical protein 2042769..2043239 Chlorobium limicola DSM 245 6355200 YP_001943878.1 CDS Clim_1860 NC_010803.1 2043355 2043849 D PFAM: Ferritin Dps family protein; KEGG: cph:Cpha266_0596 ferritin, Dps family protein; ferritin Dps family protein 2043355..2043849 Chlorobium limicola DSM 245 6355201 YP_001943879.1 CDS Clim_1861 NC_010803.1 2043961 2044827 R PFAM: metallophosphoesterase; KEGG: plt:Plut_1594 hypothetical protein; metallophosphoesterase complement(2043961..2044827) Chlorobium limicola DSM 245 6355202 YP_001943880.1 CDS Clim_1863 NC_010803.1 2047125 2048084 D TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: cch:Cag_1783 dihydroorotate dehydrogenase 1; dihydroorotate dehydrogenase family protein 2047125..2048084 Chlorobium limicola DSM 245 6355204 YP_001943881.1 CDS Clim_1864 NC_010803.1 2048141 2048512 R PFAM: S23 ribosomal protein; KEGG: sun:SUN_0718 S23 ribosomal protein; S23 ribosomal protein complement(2048141..2048512) Chlorobium limicola DSM 245 6355205 YP_001943882.1 CDS Clim_1867 NC_010803.1 2051888 2053237 R KEGG: cph:Cpha266_0592 hypothetical protein; hypothetical protein complement(2051888..2053237) Chlorobium limicola DSM 245 6355208 YP_001943883.1 CDS Clim_1868 NC_010803.1 2053636 2054931 R KEGG: cau:Caur_1775 forkhead-associated protein; hypothetical protein complement(2053636..2054931) Chlorobium limicola DSM 245 6355209 YP_001943884.1 CDS Clim_1869 NC_010803.1 2055814 2056725 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 2055814..2056725 Chlorobium limicola DSM 245 6355210 YP_001943885.1 CDS Clim_1870 NC_010803.1 2056743 2057915 D KEGG: cph:Cpha266_0587 DNA-directed DNA polymerase; DNA-directed DNA polymerase 2056743..2057915 Chlorobium limicola DSM 245 6355211 YP_001943886.1 CDS Clim_1871 NC_010803.1 2058203 2063770 R PFAM: Hemolysin-type calcium-binding region; KEGG: amr:AM1_3186 hemolysin-type calcium-binding protein; hemolysin-type calcium-binding protein complement(2058203..2063770) Chlorobium limicola DSM 245 6355212 YP_001943887.1 CDS Clim_1872 NC_010803.1 2064180 2065823 R PFAM: glycosyl transferase group 1; KEGG: pme:NATL1_21041 hypothetical protein; group 1 glycosyl transferase complement(2064180..2065823) Chlorobium limicola DSM 245 6355213 YP_001943888.1 CDS Clim_1873 NC_010803.1 2066204 2067490 R PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_2318 glycosyl transferase, group 1; group 1 glycosyl transferase complement(2066204..2067490) Chlorobium limicola DSM 245 6355214 YP_001943889.1 CDS Clim_1874 NC_010803.1 2067539 2080543 R PFAM: Hemolysin-type calcium-binding region; KEGG: psp:PSPPH_0815 calcium binding hemolysin protein; hemolysin-type calcium-binding protein complement(2067539..2080543) Chlorobium limicola DSM 245 6355215 YP_001943890.1 CDS Clim_1875 NC_010803.1 2081548 2081667 R hypothetical protein complement(2081548..2081667) Chlorobium limicola DSM 245 6355216 YP_001943891.1 CDS Clim_1876 NC_010803.1 2081919 2082944 R PFAM: metallophosphoesterase; KEGG: sus:Acid_7022 metallophosphoesterase; metallophosphoesterase complement(2081919..2082944) Chlorobium limicola DSM 245 6355217 YP_001943892.1 CDS Clim_1877 NC_010803.1 2083433 2083780 D KEGG: mxa:MXAN_2068 translation initiation factor IF-2; hypothetical protein 2083433..2083780 Chlorobium limicola DSM 245 6355218 YP_001943893.1 CDS Clim_1879 NC_010803.1 2084611 2085603 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pvi:Cvib_0649 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(2084611..2085603) Chlorobium limicola DSM 245 6355220 YP_001943894.1 CDS Clim_1880 NC_010803.1 2085859 2087013 R hypothetical protein complement(2085859..2087013) Chlorobium limicola DSM 245 6355221 YP_001943895.1 CDS Clim_1881 NC_010803.1 2087015 2087779 R PFAM: HpcH/HpaI aldolase; KEGG: mbu:Mbur_1595 2-dehydro-3-deoxyglucarate aldolase; HpcH/HpaI aldolase complement(2087015..2087779) Chlorobium limicola DSM 245 6355222 YP_001943896.1 CDS Clim_1882 NC_010803.1 2087776 2088447 R PFAM: cyclase family protein; KEGG: mbu:Mbur_1598 cyclase; cyclase family protein complement(2087776..2088447) Chlorobium limicola DSM 245 6355223 YP_001943897.1 CDS Clim_1883 NC_010803.1 2088452 2089129 R PFAM: acylneuraminate cytidylyltransferase; KEGG: mbu:Mbur_1594 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase complement(2088452..2089129) Chlorobium limicola DSM 245 6355224 YP_001943898.1 CDS Clim_1884 NC_010803.1 2089142 2090425 R KEGG: cth:Cthe_0640 cellulosome enzyme, dockerin type I; hypothetical protein complement(2089142..2090425) Chlorobium limicola DSM 245 6355225 YP_001943899.1 CDS Clim_1885 NC_010803.1 2090429 2090881 R PFAM: conserved hypothetical protein; KEGG: cac:CAC0836 beta-D-galactosidase; hypothetical protein complement(2090429..2090881) Chlorobium limicola DSM 245 6355226 YP_001943900.1 CDS Clim_1886 NC_010803.1 2090888 2091952 R PFAM: 3-dehydroquinate synthase; KEGG: mag:amb0135 3-dehydroquinate synthetase; 3-dehydroquinate synthase complement(2090888..2091952) Chlorobium limicola DSM 245 6354716 YP_001943901.1 CDS Clim_1887 NC_010803.1 2091945 2092697 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ctc:CTC00130 3-ketoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR complement(2091945..2092697) Chlorobium limicola DSM 245 6354941 YP_001943902.1 CDS Clim_1888 NC_010803.1 2092931 2093929 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: mag:amb0132 predicted dehydrogenase and related protein; oxidoreductase domain-containing protein complement(2092931..2093929) Chlorobium limicola DSM 245 6354942 YP_001943903.1 CDS Clim_1889 NC_010803.1 2094008 2094817 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: nis:NIS_0664 D-3-phosphoglycerate dehydrogenase; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(2094008..2094817) Chlorobium limicola DSM 245 6354943 YP_001943904.1 CDS Clim_1890 NC_010803.1 2094889 2095725 R PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1698 integrase, catalytic region; integrase catalytic subunit complement(2094889..2095725) Chlorobium limicola DSM 245 6354944 YP_001943905.1 CDS Clim_1892 NC_010803.1 2096340 2096957 R KEGG: rpa:RPA3927 possible phosphoheptose isomerase; phosphoheptose isomerase complement(2096340..2096957) Chlorobium limicola DSM 245 6354946 YP_001943906.1 CDS Clim_1894 NC_010803.1 2097536 2097829 D PFAM: transposase IS3/IS911 family protein; KEGG: cph:Cpha266_2113 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2097536..2097829 Chlorobium limicola DSM 245 6354948 YP_001943907.1 CDS Clim_1895 NC_010803.1 2097826 2098746 D PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region; integrase catalytic subunit 2097826..2098746 Chlorobium limicola DSM 245 6354949 YP_001943908.1 CDS Clim_1896 NC_010803.1 2099152 2100243 R KEGG: sfr:Sfri_2831 hypothetical protein; hypothetical protein complement(2099152..2100243) Chlorobium limicola DSM 245 6354950 YP_001943909.1 CDS Clim_1897 NC_010803.1 2100247 2101164 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dvl:Dvul_2644 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(2100247..2101164) Chlorobium limicola DSM 245 6354951 YP_001943910.1 CDS Clim_1898 NC_010803.1 2101157 2102251 R KEGG: sfr:Sfri_2831 hypothetical protein; hypothetical protein complement(2101157..2102251) Chlorobium limicola DSM 245 6354952 YP_001943911.1 CDS Clim_1899 NC_010803.1 2102230 2103582 R KEGG: gvi:glr3782 unknown protein; hypothetical protein complement(2102230..2103582) Chlorobium limicola DSM 245 6354953 YP_001943912.1 CDS Clim_1900 NC_010803.1 2104017 2105231 R KEGG: chu:CHU_2886 conserved hypothetical protein, possible O-antigen ligase-related; hypothetical protein complement(2104017..2105231) Chlorobium limicola DSM 245 6354954 YP_001943913.1 CDS Clim_1902 NC_010803.1 2106324 2107247 R PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region; integrase catalytic subunit complement(2106324..2107247) Chlorobium limicola DSM 245 6354956 YP_001943914.1 CDS Clim_1903 NC_010803.1 2107244 2107537 R PFAM: transposase IS3/IS911 family protein; KEGG: cph:Cpha266_2113 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(2107244..2107537) Chlorobium limicola DSM 245 6354957 YP_001943915.1 CDS Clim_1904 NC_010803.1 2107979 2108347 R PFAM: S23 ribosomal protein; KEGG: cph:Cpha266_2609 S23 ribosomal protein; S23 ribosomal protein complement(2107979..2108347) Chlorobium limicola DSM 245 6354958 YP_001943916.1 CDS Clim_1905 NC_010803.1 2108454 2109653 R PFAM: glycosyl transferase family 4; KEGG: hch:HCH_02401 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; glycosyl transferase family protein complement(2108454..2109653) Chlorobium limicola DSM 245 6354959 YP_001943917.1 CDS Clim_1906 NC_010803.1 2109686 2112073 R KEGG: cph:Cpha266_2649 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; capsular polysaccharide biosynthesis protein complement(2109686..2112073) Chlorobium limicola DSM 245 6354960 YP_001943918.1 CDS Clim_1907 NC_010803.1 2112151 2112726 R KEGG: plt:Plut_0763 hypothetical protein; hypothetical protein complement(2112151..2112726) Chlorobium limicola DSM 245 6354961 YP_001943919.1 CDS Clim_1908 NC_010803.1 2113086 2114327 R KEGG: ppd:Ppro_0062 hypothetical protein; hypothetical protein complement(2113086..2114327) Chlorobium limicola DSM 245 6354962 YP_001943920.1 CDS Clim_1909 NC_010803.1 2114317 2114925 R KEGG: hma:rrnAC2982 hypothetical protein; hypothetical protein complement(2114317..2114925) Chlorobium limicola DSM 245 6354963 YP_001943921.1 CDS Clim_1910 NC_010803.1 2114942 2115859 R KEGG: sfu:Sfum_2196 hypothetical protein; hypothetical protein complement(2114942..2115859) Chlorobium limicola DSM 245 6354964 YP_001943922.1 CDS Clim_1911 NC_010803.1 2115863 2116177 R KEGG: sfu:Sfum_2199 coenzyme PQQ synthesis D; hypothetical protein complement(2115863..2116177) Chlorobium limicola DSM 245 6354965 YP_001943923.1 CDS Clim_1912 NC_010803.1 2116276 2116476 R hypothetical protein complement(2116276..2116476) Chlorobium limicola DSM 245 6354966 YP_001943924.1 CDS Clim_1913 NC_010803.1 2116571 2117665 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sfu:Sfum_2197 radical SAM domain protein; radical SAM protein complement(2116571..2117665) Chlorobium limicola DSM 245 6354967 YP_001943925.1 CDS Clim_1914 NC_010803.1 2117734 2118864 R PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_2198 radical SAM domain protein; radical SAM protein complement(2117734..2118864) Chlorobium limicola DSM 245 6354968 YP_001943926.1 CDS Clim_1915 NC_010803.1 2118942 2120783 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: amr:AM1_1912 ABC transporter, ATP-binding/permease protein; ABC transporter complement(2118942..2120783) Chlorobium limicola DSM 245 6354969 YP_001943927.1 CDS Clim_1916 NC_010803.1 2121067 2121456 R hypothetical protein complement(2121067..2121456) Chlorobium limicola DSM 245 6354970 YP_001943928.1 CDS Clim_1917 NC_010803.1 2121490 2122479 R hypothetical protein complement(2121490..2122479) Chlorobium limicola DSM 245 6354971 YP_001943929.1 CDS Clim_1918 NC_010803.1 2122604 2123371 R KEGG: rpc:RPC_1817 hypothetical protein; hypothetical protein complement(2122604..2123371) Chlorobium limicola DSM 245 6354972 YP_001943930.1 CDS Clim_1919 NC_010803.1 2123349 2123558 R hypothetical protein complement(2123349..2123558) Chlorobium limicola DSM 245 6354973 YP_001943931.1 CDS Clim_1920 NC_010803.1 2123973 2124278 R KEGG: mba:Mbar_A2670 hypothetical protein; hypothetical protein complement(2123973..2124278) Chlorobium limicola DSM 245 6354974 YP_001943932.1 CDS Clim_1921 NC_010803.1 2124299 2125093 R KEGG: cch:Cag_0645 hypothetical protein; hypothetical protein complement(2124299..2125093) Chlorobium limicola DSM 245 6354975 YP_001943933.1 CDS Clim_1922 NC_010803.1 2126109 2126258 D hypothetical protein 2126109..2126258 Chlorobium limicola DSM 245 6354976 YP_001943934.1 CDS Clim_1923 NC_010803.1 2126284 2126583 R KEGG: mba:Mbar_A2670 hypothetical protein; hypothetical protein complement(2126284..2126583) Chlorobium limicola DSM 245 6354977 YP_001943935.1 CDS Clim_1924 NC_010803.1 2127046 2128368 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: mba:Mbar_A0259 protease; peptidase S8/S53 subtilisin kexin sedolisin complement(2127046..2128368) Chlorobium limicola DSM 245 6354978 YP_001943936.1 CDS Clim_1925 NC_010803.1 2128500 2130851 R KEGG: rrs:RoseRS_1019 hypothetical protein; hypothetical protein complement(2128500..2130851) Chlorobium limicola DSM 245 6354979 YP_001943937.1 CDS Clim_1926 NC_010803.1 2131170 2132603 D PFAM: amidohydrolase; KEGG: bfr:BF4287 hypothetical protein; amidohydrolase 2131170..2132603 Chlorobium limicola DSM 245 6354980 YP_001943938.1 CDS Clim_1927 NC_010803.1 2132838 2133854 R PFAM: fructose-bisphosphate aldolase class-I; KEGG: tbd:Tbd_1513 fructose-bisphosphate aldolase; Fructose-bisphosphate aldolase complement(2132838..2133854) Chlorobium limicola DSM 245 6354981 YP_001943939.1 CDS Clim_1928 NC_010803.1 2134131 2135327 D PFAM: iron-containing alcohol dehydrogenase; KEGG: pvi:Cvib_0955 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2134131..2135327 Chlorobium limicola DSM 245 6354982 YP_001943940.1 CDS Clim_1929 NC_010803.1 2135425 2136390 R PFAM: protein of unknown function DUF1568; KEGG: cph:Cpha266_1427 protein of unknown function DUF1568; hypothetical protein complement(2135425..2136390) Chlorobium limicola DSM 245 6354983 YP_001943941.1 CDS Clim_1930 NC_010803.1 2136648 2137436 D PFAM: metallophosphoesterase; KEGG: plt:Plut_0506 Ser/Thr protein phosphatase family protein; metallophosphoesterase 2136648..2137436 Chlorobium limicola DSM 245 6354984 YP_001943942.1 CDS Clim_1931 NC_010803.1 2137893 2138813 R PFAM: Domain of unknown function DUF1814; KEGG: plt:Plut_0508 hypothetical protein; hypothetical protein complement(2137893..2138813) Chlorobium limicola DSM 245 6354985 YP_001943943.1 CDS Clim_1932 NC_010803.1 2138810 2139421 R KEGG: plt:Plut_0507 hypothetical protein; hypothetical protein complement(2138810..2139421) Chlorobium limicola DSM 245 6354986 YP_001943944.1 CDS Clim_1933 NC_010803.1 2139652 2140440 D KEGG: plt:Plut_0506 Ser/Thr protein phosphatase family protein; Ser/Thr protein phosphatase family protein 2139652..2140440 Chlorobium limicola DSM 245 6354987 YP_001943945.1 CDS clpX NC_010803.1 2140982 2142295 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(2140982..2142295) Chlorobium limicola DSM 245 6354989 YP_001943946.1 CDS Clim_1935 NC_010803.1 2142339 2142611 R KEGG: cph:Cpha266_0630 hypothetical protein; hypothetical protein complement(2142339..2142611) Chlorobium limicola DSM 245 6354990 YP_001943947.1 CDS gltD NC_010803.1 2142680 2144155 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(2142680..2144155) Chlorobium limicola DSM 245 6354991 YP_001943948.1 CDS Clim_1937 NC_010803.1 2144204 2148805 R PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: cph:Cpha266_0628 glutamate synthase (NADH) large subunit; Glutamate synthase (ferredoxin) complement(2144204..2148805) Chlorobium limicola DSM 245 6354992 YP_001943949.1 CDS gpmA NC_010803.1 2148931 2149674 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(2148931..2149674) Chlorobium limicola DSM 245 6354993 YP_001943950.1 CDS Clim_1939 NC_010803.1 2150148 2151407 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: cph:Cpha266_0626 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 2150148..2151407 Chlorobium limicola DSM 245 6354994 YP_001943951.1 CDS Clim_1940 NC_010803.1 2151485 2152510 D KEGG: cph:Cpha266_0625 hypothetical protein; hypothetical protein 2151485..2152510 Chlorobium limicola DSM 245 6354995 YP_001943952.1 CDS Clim_1941 NC_010803.1 2152870 2153418 R KEGG: cph:Cpha266_1413 RNA polymerase, sigma-24 subunit, ECF subfamily; hypothetical protein complement(2152870..2153418) Chlorobium limicola DSM 245 6354996 YP_001943953.1 CDS Clim_1942 NC_010803.1 2153461 2153919 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cph:Cpha266_0624 tRNA-adenosine deaminase; zinc-binding CMP/dCMP deaminase complement(2153461..2153919) Chlorobium limicola DSM 245 6354997 YP_001943954.1 CDS sucC NC_010803.1 2154043 2155221 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2154043..2155221 Chlorobium limicola DSM 245 6354998 YP_001943955.1 CDS Clim_1944 NC_010803.1 2155645 2157618 R PFAM: ABC transporter; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: cph:Cpha266_0622 ABC transporter; ABC transporter complement(2155645..2157618) Chlorobium limicola DSM 245 6354999 YP_001943956.1 CDS Clim_1945 NC_010803.1 2157615 2158583 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cph:Cpha266_0621 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2157615..2158583) Chlorobium limicola DSM 245 6355000 YP_001943957.1 CDS Clim_1946 NC_010803.1 2158567 2159862 R PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0620 outer membrane efflux protein; outer membrane efflux protein complement(2158567..2159862) Chlorobium limicola DSM 245 6355001 YP_001943958.1 CDS Clim_1947 NC_010803.1 2160035 2160487 R hypothetical protein complement(2160035..2160487) Chlorobium limicola DSM 245 6355002 YP_001943959.1 CDS Clim_1948 NC_010803.1 2160659 2162611 D PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_0618 ABC transporter; ABC transporter 2160659..2162611 Chlorobium limicola DSM 245 6355003 YP_001943960.1 CDS Clim_1949 NC_010803.1 2162622 2166815 R KEGG: cph:Cpha266_0617 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase complement(2162622..2166815) Chlorobium limicola DSM 245 6355004 YP_001943961.1 CDS Clim_1950 NC_010803.1 2167110 2167427 R PFAM: small multidrug resistance protein; KEGG: cph:Cpha266_0616 small multidrug resistance protein; small multidrug resistance protein complement(2167110..2167427) Chlorobium limicola DSM 245 6355005 YP_001943962.1 CDS Clim_1951 NC_010803.1 2167434 2168633 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cph:Cpha266_0615 oxidoreductase domain protein; oxidoreductase domain-containing protein complement(2167434..2168633) Chlorobium limicola DSM 245 6355006 YP_001943963.1 CDS Clim_1952 NC_010803.1 2168642 2170063 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(2168642..2170063) Chlorobium limicola DSM 245 6355007 YP_001943964.1 CDS Clim_1953 NC_010803.1 2170193 2170708 D KEGG: cch:Cag_0286 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 2170193..2170708 Chlorobium limicola DSM 245 6355008 YP_001943965.1 CDS Clim_1954 NC_010803.1 2170695 2171201 D PFAM: protein of unknown function DUF985; KEGG: cte:CT0370 hypothetical protein; hypothetical protein 2170695..2171201 Chlorobium limicola DSM 245 6355009 YP_001943966.1 CDS Clim_1955 NC_010803.1 2171398 2172699 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cph:Cpha266_0611 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2171398..2172699 Chlorobium limicola DSM 245 6355010 YP_001943967.1 CDS Clim_1956 NC_010803.1 2172696 2172908 D KEGG: cph:Cpha266_0610 hypothetical protein; hypothetical protein 2172696..2172908 Chlorobium limicola DSM 245 6355011 YP_001943968.1 CDS Clim_1957 NC_010803.1 2173046 2174245 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 2173046..2174245 Chlorobium limicola DSM 245 6355012 YP_001943969.1 CDS Clim_1958 NC_010803.1 2174271 2174465 D KEGG: cte:CT0366 hypothetical protein; hypothetical protein 2174271..2174465 Chlorobium limicola DSM 245 6355013 YP_001943970.1 CDS Clim_1959 NC_010803.1 2174554 2175267 D KEGG: azo:azo1317 hypothetical protein; hypothetical protein 2174554..2175267 Chlorobium limicola DSM 245 6355014 YP_001943971.1 CDS Clim_1960 NC_010803.1 2175236 2176051 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: plt:Plut_1585 TonB-like; TonB family protein complement(2175236..2176051) Chlorobium limicola DSM 245 6355015 YP_001943972.1 CDS Clim_1961 NC_010803.1 2176084 2176608 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cph:Cpha266_0605 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(2176084..2176608) Chlorobium limicola DSM 245 6355016 YP_001943973.1 CDS Clim_1962 NC_010803.1 2176611 2177144 R KEGG: cph:Cpha266_0604 hypothetical protein; hypothetical protein complement(2176611..2177144) Chlorobium limicola DSM 245 6355017 YP_001943974.1 CDS Clim_1963 NC_010803.1 2177150 2177896 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: cph:Cpha266_0603 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(2177150..2177896) Chlorobium limicola DSM 245 6355018 YP_001943975.1 CDS Clim_1964 NC_010803.1 2178129 2180027 D KEGG: cph:Cpha266_0602 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase 2178129..2180027 Chlorobium limicola DSM 245 6355019 YP_001943976.1 CDS glyA NC_010803.1 2180109 2181434 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(2180109..2181434) Chlorobium limicola DSM 245 6355020 YP_001943977.1 CDS Clim_1966 NC_010803.1 2181465 2182748 R KEGG: cph:Cpha266_0600 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(2181465..2182748) Chlorobium limicola DSM 245 6355021 YP_001943978.1 CDS Clim_1967 NC_010803.1 2182981 2184837 D PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: cph:Cpha266_0599 carbamoyl-phosphate synthase large subunit; carbamoyl-phosphate synthetase large chain domain-containing protein 2182981..2184837 Chlorobium limicola DSM 245 6355471 YP_001943979.1 CDS Clim_1968 NC_010803.1 2184910 2185446 R KEGG: cph:Cpha266_1999 hypothetical protein; hypothetical protein complement(2184910..2185446) Chlorobium limicola DSM 245 6355472 YP_001943980.1 CDS Clim_1969 NC_010803.1 2185455 2186339 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_2000 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2185455..2186339) Chlorobium limicola DSM 245 6355473 YP_001943981.1 CDS Clim_1970 NC_010803.1 2186317 2187618 R PFAM: ribulose bisphosphate carboxylase large chain; KEGG: plt:Plut_0412 ribulose-bisphosphate carboxylase; RuBisCO-like protein complement(2186317..2187618) Chlorobium limicola DSM 245 6355474 YP_001943982.1 CDS Clim_1971 NC_010803.1 2187707 2188588 R PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cph:Cpha266_0194 aldolase; aldolase complement(2187707..2188588) Chlorobium limicola DSM 245 6355475 YP_001943983.1 CDS Clim_1972 NC_010803.1 2188655 2190772 R PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: cph:Cpha266_0195 short chain dehydrogenase; short chain dehydrogenase complement(2188655..2190772) Chlorobium limicola DSM 245 6355476 YP_001943984.1 CDS Clim_1973 NC_010803.1 2190843 2191061 R KEGG: plt:Plut_0409 hypothetical protein; hypothetical protein complement(2190843..2191061) Chlorobium limicola DSM 245 6355477 YP_001943985.1 CDS Clim_1974 NC_010803.1 2191098 2191709 R PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: plt:Plut_0408 2-vinyl bacteriochlorophyllide hydratase; 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD complement(2191098..2191709) Chlorobium limicola DSM 245 6355478 YP_001943986.1 CDS Clim_1975 NC_010803.1 2191878 2193284 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: plt:Plut_0407 elongator protein 3/MiaB/NifB; radical SAM protein 2191878..2193284 Chlorobium limicola DSM 245 6355479 YP_001943987.1 CDS Clim_1976 NC_010803.1 2193524 2194267 D KEGG: cte:CT1620 hypothetical protein; hypothetical protein 2193524..2194267 Chlorobium limicola DSM 245 6355480 YP_001943988.1 CDS Clim_1977 NC_010803.1 2194516 2195574 R PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: cph:Cpha266_2534 protein of unknown function DUF900, hydrolase family protein; hypothetical protein complement(2194516..2195574) Chlorobium limicola DSM 245 6355481 YP_001943989.1 CDS Clim_1978 NC_010803.1 2196068 2197696 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(2196068..2197696) Chlorobium limicola DSM 245 6355482 YP_001943990.1 CDS Clim_1979 NC_010803.1 2197751 2198158 R PFAM: hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: pvi:Cvib_1456 hypothetical protein; hypothetical protein complement(2197751..2198158) Chlorobium limicola DSM 245 6355483 YP_001943991.1 CDS Clim_1980 NC_010803.1 2198160 2199062 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1701 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin complement(2198160..2199062) Chlorobium limicola DSM 245 6355484 YP_001943992.1 CDS Clim_1981 NC_010803.1 2199059 2199565 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: plt:Plut_1672 hypothetical protein; BadM/Rrf2 family transcriptional regulator complement(2199059..2199565) Chlorobium limicola DSM 245 6355485 YP_001943993.1 CDS Clim_1982 NC_010803.1 2199815 2200750 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0508 methyltransferase type 12; type 12 methyltransferase 2199815..2200750 Chlorobium limicola DSM 245 6355486 YP_001943994.1 CDS Clim_1983 NC_010803.1 2200832 2201284 D KEGG: cph:Cpha266_0507 cytochrome c; cytochrome c 2200832..2201284 Chlorobium limicola DSM 245 6355487 YP_001943995.1 CDS Clim_1984 NC_010803.1 2201476 2202501 D PFAM: peptidase M50; KEGG: cph:Cpha266_0506 peptidase M50; peptidase M50 2201476..2202501 Chlorobium limicola DSM 245 6355488 YP_001943996.1 CDS Clim_1985 NC_010803.1 2202498 2203403 D KEGG: cph:Cpha266_0505 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 2202498..2203403 Chlorobium limicola DSM 245 6355489 YP_001943997.1 CDS Clim_1986 NC_010803.1 2203495 2207031 D TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: cph:Cpha266_0504 chromosome segregation protein SMC; chromosome segregation protein SMC 2203495..2207031 Chlorobium limicola DSM 245 6355490 YP_001943998.1 CDS Clim_1987 NC_010803.1 2207049 2207741 D PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pvi:Cvib_1463 haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase domain-containing protein hydrolase 2207049..2207741 Chlorobium limicola DSM 245 6355491 YP_001943999.1 CDS Clim_1988 NC_010803.1 2207761 2208255 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: cph:Cpha266_0502 NusB antitermination factor; NusB antitermination factor 2207761..2208255 Chlorobium limicola DSM 245 6355492 YP_001944000.1 CDS Clim_1989 NC_010803.1 2208260 2208970 D PFAM: metallophosphoesterase; KEGG: cph:Cpha266_2593 metallophosphoesterase; metallophosphoesterase 2208260..2208970 Chlorobium limicola DSM 245 6355493 YP_001944001.1 CDS Clim_1990 NC_010803.1 2208976 2209614 D KEGG: cph:Cpha266_0501 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; endonuclease III 2208976..2209614 Chlorobium limicola DSM 245 6355494 YP_001944002.1 CDS Clim_1991 NC_010803.1 2209624 2210052 R KEGG: cph:Cpha266_0500 hypothetical protein; hypothetical protein complement(2209624..2210052) Chlorobium limicola DSM 245 6355495 YP_001944003.1 CDS Clim_1992 NC_010803.1 2210148 2211983 R TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; KEGG: cph:Cpha266_0499 para-aminobenzoate synthase, subunit I; para-aminobenzoate synthase subunit I complement(2210148..2211983) Chlorobium limicola DSM 245 6355496 YP_001944004.1 CDS Clim_1993 NC_010803.1 2211994 2213553 R PFAM: Ppx/GppA phosphatase; metal-dependent phosphohydrolase HD sub domain; KEGG: cph:Cpha266_0498 Ppx/GppA phosphatase; Ppx/GppA phosphatase complement(2211994..2213553) Chlorobium limicola DSM 245 6355497 YP_001944005.1 CDS Clim_1994 NC_010803.1 2214040 2214849 D PFAM: phosphatidate cytidylyltransferase; KEGG: cph:Cpha266_0497 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 2214040..2214849 Chlorobium limicola DSM 245 6355498 YP_001944006.1 CDS Clim_1995 NC_010803.1 2214874 2215833 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: cph:Cpha266_0496 translation factor SUA5; Sua5/YciO/YrdC/YwlC family protein 2214874..2215833 Chlorobium limicola DSM 245 6355499 YP_001944007.1 CDS Clim_1996 NC_010803.1 2215842 2217863 R KEGG: cph:Cpha266_0495 hypothetical protein; hypothetical protein complement(2215842..2217863) Chlorobium limicola DSM 245 6355500 YP_001944008.1 CDS Clim_1997 NC_010803.1 2217946 2218704 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pvi:Cvib_1473 ribosomal large subunit pseudouridine synthase B; pseudouridine synthase complement(2217946..2218704) Chlorobium limicola DSM 245 6355501 YP_001944009.1 CDS Clim_1998 NC_010803.1 2218712 2219377 R TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: cph:Cpha266_0493 condensin subunit ScpB; segregation and condensation protein B complement(2218712..2219377) Chlorobium limicola DSM 245 6355502 YP_001944010.1 CDS Clim_1999 NC_010803.1 2219380 2220162 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(2219380..2220162) Chlorobium limicola DSM 245 6355503 YP_001944011.1 CDS hisH NC_010803.1 2220185 2220790 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(2220185..2220790) Chlorobium limicola DSM 245 6355504 YP_001944012.1 CDS Clim_2001 NC_010803.1 2220965 2221810 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cph:Cpha266_0490 ferredoxin--NADP(+) reductase subunit alpha; ferredoxin-NADP(+) reductase subunit alpha 2220965..2221810 Chlorobium limicola DSM 245 6355505 YP_001944013.1 CDS Clim_2002 NC_010803.1 2221919 2223361 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 2221919..2223361 Chlorobium limicola DSM 245 6355506 YP_001944014.1 CDS Clim_2003 NC_010803.1 2223431 2223835 D PFAM: CopG domain protein DNA-binding domain protein; NikR nickel binding; KEGG: cph:Cpha266_0488 CopG family transcriptional regulator; CopG family transcriptional regulator 2223431..2223835 Chlorobium limicola DSM 245 6355507 YP_001944015.1 CDS Clim_2004 NC_010803.1 2223931 2224731 D KEGG: cph:Cpha266_0487 hypothetical protein; hypothetical protein 2223931..2224731 Chlorobium limicola DSM 245 6355508 YP_001944016.1 CDS Clim_2005 NC_010803.1 2224838 2225869 D PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cph:Cpha266_0486 cobalamin (vitamin B12) biosynthesis CbiM protein; cobalamin (vitamin B12) biosynthesis protein CbiM 2224838..2225869 Chlorobium limicola DSM 245 6355509 YP_001944017.1 CDS Clim_2006 NC_010803.1 2225866 2226621 D TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cph:Cpha266_0485 cobalt transport protein; cobalt ABC transporter inner membrane subunit CbiQ 2225866..2226621 Chlorobium limicola DSM 245 6355510 YP_001944018.1 CDS Clim_2007 NC_010803.1 2226639 2227358 D PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_0484 ABC transporter; ABC transporter 2226639..2227358 Chlorobium limicola DSM 245 6355511 YP_001944019.1 CDS Clim_2008 NC_010803.1 2227422 2228336 R PFAM: protein of unknown function DUF88; KEGG: cph:Cpha266_0482 protein of unknown function DUF88; hypothetical protein complement(2227422..2228336) Chlorobium limicola DSM 245 6355512 YP_001944020.1 CDS Clim_2009 NC_010803.1 2228383 2229288 R PFAM: Auxin Efflux Carrier; KEGG: plt:Plut_1694 hypothetical protein; auxin efflux carrier complement(2228383..2229288) Chlorobium limicola DSM 245 6355513 YP_001944021.1 CDS Clim_2010 NC_010803.1 2229390 2230415 R PFAM: ferrochelatase; KEGG: cph:Cpha266_0481 ferrochelatase; ferrochelatase complement(2229390..2230415) Chlorobium limicola DSM 245 6355514 YP_001944022.1 CDS Clim_2011 NC_010803.1 2230417 2231502 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_0480 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2230417..2231502) Chlorobium limicola DSM 245 6355515 YP_001944023.1 CDS hisI NC_010803.1 2231697 2232110 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 2231697..2232110 Chlorobium limicola DSM 245 6355516 YP_001944024.1 CDS Clim_2013 NC_010803.1 2232122 2232847 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0478 demethylmenaquinone methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 2232122..2232847 Chlorobium limicola DSM 245 6355517 YP_001944025.1 CDS Clim_2014 NC_010803.1 2232877 2233257 R KEGG: cph:Cpha266_0477 hypothetical protein; hypothetical protein complement(2232877..2233257) Chlorobium limicola DSM 245 6355518 YP_001944026.1 CDS Clim_2015 NC_010803.1 2233282 2233899 R PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_0476 conserved hypothetical protein 730; hypothetical protein complement(2233282..2233899) Chlorobium limicola DSM 245 6355519 YP_001944027.1 CDS Clim_2016 NC_010803.1 2233909 2235930 R KEGG: cte:CT0457 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase; NAD-dependent DNA ligase complement(2233909..2235930) Chlorobium limicola DSM 245 6355520 YP_001944028.1 CDS Clim_2017 NC_010803.1 2235950 2237491 R KEGG: cph:Cpha266_0474 hypothetical protein; hypothetical protein complement(2235950..2237491) Chlorobium limicola DSM 245 6355521 YP_001944029.1 CDS Clim_2018 NC_010803.1 2237522 2238238 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_0473 ABC transporter; ABC transporter complement(2237522..2238238) Chlorobium limicola DSM 245 6355522 YP_001944030.1 CDS Clim_2019 NC_010803.1 2238591 2239259 D PFAM: protein of unknown function UPF0153; KEGG: cph:Cpha266_0471 protein of unknown function UPF0153; hypothetical protein 2238591..2239259 Chlorobium limicola DSM 245 6355523 YP_001944031.1 CDS Clim_2020 NC_010803.1 2239280 2239519 D KEGG: cph:Cpha266_0470 hypothetical protein; hypothetical protein 2239280..2239519 Chlorobium limicola DSM 245 6355524 YP_001944032.1 CDS Clim_2021 NC_010803.1 2239583 2240638 R TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cte:CT1724 arsenite efflux transporter; arsenical-resistance protein complement(2239583..2240638) Chlorobium limicola DSM 245 6355525 YP_001944033.1 CDS Clim_2022 NC_010803.1 2240643 2241071 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cph:Cpha266_0465 protein tyrosine phosphatase; protein tyrosine phosphatase complement(2240643..2241071) Chlorobium limicola DSM 245 6355526 YP_001944034.1 CDS Clim_2023 NC_010803.1 2241109 2242161 R PFAM: permease; KEGG: cte:CT1726 hypothetical protein; permease complement(2241109..2242161) Chlorobium limicola DSM 245 6355527 YP_001944035.1 CDS Clim_2024 NC_010803.1 2242179 2242574 R SMART: Rhodanese domain protein; KEGG: cph:Cpha266_0463 rhodanese domain protein; rhodanese domain-containing protein complement(2242179..2242574) Chlorobium limicola DSM 245 6355528 YP_001944036.1 CDS Clim_2025 NC_010803.1 2242592 2242828 R TIGRFAM: redox-active disulfide protein 2; KEGG: cch:Cag_0399 redox-active disulfide protein 2; redox-active disulfide protein 2 complement(2242592..2242828) Chlorobium limicola DSM 245 6355529 YP_001944037.1 CDS Clim_2026 NC_010803.1 2242940 2243275 R PFAM: regulatory protein ArsR; KEGG: cte:CT1728 ArsR family transcriptional regulator; ArsR family transcriptional regulator complement(2242940..2243275) Chlorobium limicola DSM 245 6355530 YP_001944038.1 CDS Clim_2027 NC_010803.1 2243420 2243851 D PFAM: Secreted repeat of unknown function; KEGG: cph:Cpha266_0456 secreted repeat of unknown function; hypothetical protein 2243420..2243851 Chlorobium limicola DSM 245 6355531 YP_001944039.1 CDS Clim_2028 NC_010803.1 2244014 2244304 R KEGG: cph:Cpha266_0786 DNA-binding protein; XRE family transcriptional regulator complement(2244014..2244304) Chlorobium limicola DSM 245 6355532 YP_001944040.1 CDS Clim_2031 NC_010803.1 2244906 2245169 D TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: gvi:gsr2534 hypothetical protein; CopG/Arc/MetJ family addiction module antidote protein 2244906..2245169 Chlorobium limicola DSM 245 6355535 YP_001944041.1 CDS Clim_2032 NC_010803.1 2245171 2245470 D PFAM: plasmid stabilization system; KEGG: gvi:gsr3505 hypothetical protein; plasmid stabilization system 2245171..2245470 Chlorobium limicola DSM 245 6355536 YP_001944042.1 CDS Clim_2033 NC_010803.1 2245489 2245749 D KEGG: plt:Plut_1397 invertase/recombinase like protein; hypothetical protein 2245489..2245749 Chlorobium limicola DSM 245 6355537 YP_001944043.1 CDS Clim_2035 NC_010803.1 2245993 2247231 R TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase component 1; KEGG: cph:Cpha266_2075 chlorophyllide reductase subunit Y; chlorophyllide reductase subunit Y complement(2245993..2247231) Chlorobium limicola DSM 245 6355539 YP_001944044.1 CDS Clim_2036 NC_010803.1 2247212 2248216 R KEGG: cte:CT1827 hypothetical protein; hypothetical protein complement(2247212..2248216) Chlorobium limicola DSM 245 6355540 YP_001944045.1 CDS xseA NC_010803.1 2248219 2249616 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2248219..2249616 Chlorobium limicola DSM 245 6355541 YP_001944046.1 CDS Clim_2038 NC_010803.1 2249594 2250337 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(2249594..2250337) Chlorobium limicola DSM 245 6355542 YP_001944047.1 CDS Clim_2039 NC_010803.1 2250334 2250786 R PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: cph:Cpha266_2080 D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase complement(2250334..2250786) Chlorobium limicola DSM 245 6355543 YP_001944048.1 CDS Clim_2040 NC_010803.1 2250789 2251094 R PFAM: protein of unknown function DUF167; KEGG: cph:Cpha266_2081 protein of unknown function DUF167; hypothetical protein complement(2250789..2251094) Chlorobium limicola DSM 245 6355544 YP_001944049.1 CDS gatC NC_010803.1 2251106 2251393 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(2251106..2251393) Chlorobium limicola DSM 245 6355545 YP_001944050.1 CDS Clim_2042 NC_010803.1 2251422 2252765 R KEGG: cph:Cpha266_2083 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I complement(2251422..2252765) Chlorobium limicola DSM 245 6355546 YP_001944051.1 CDS Clim_2043 NC_010803.1 2253203 2254252 R PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_2084 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(2253203..2254252) Chlorobium limicola DSM 245 6355548 YP_001944052.1 CDS Clim_2044 NC_010803.1 2254249 2254998 R KEGG: cph:Cpha266_2085 hypothetical protein; hypothetical protein complement(2254249..2254998) Chlorobium limicola DSM 245 6355022 YP_001944053.1 CDS Clim_2045 NC_010803.1 2255018 2255224 R PFAM: Heavy metal transport/detoxification protein; KEGG: cph:Cpha266_2086 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein complement(2255018..2255224) Chlorobium limicola DSM 245 6355023 YP_001944054.1 CDS Clim_2046 NC_010803.1 2255323 2255949 D PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_2087 tetratricopeptide TPR_2 repeat protein; hypothetical protein 2255323..2255949 Chlorobium limicola DSM 245 6355024 YP_001944055.1 CDS Clim_2047 NC_010803.1 2256123 2257544 D TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: cph:Cpha266_2088 isochorismate synthases; isochorismate synthase 2256123..2257544 Chlorobium limicola DSM 245 6355025 YP_001944056.1 CDS Clim_2048 NC_010803.1 2257537 2259288 D TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein; KEGG: cph:Cpha266_2089 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 2257537..2259288 Chlorobium limicola DSM 245 6355026 YP_001944057.1 CDS Clim_2049 NC_010803.1 2259288 2260076 D PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_2090 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2259288..2260076 Chlorobium limicola DSM 245 6355027 YP_001944058.1 CDS Clim_2050 NC_010803.1 2260085 2260906 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 2260085..2260906 Chlorobium limicola DSM 245 6355028 YP_001944059.1 CDS Clim_2051 NC_010803.1 2260903 2261973 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: cph:Cpha266_2092 O-succinylbenzoate-CoA synthase; mandelate racemase/muconate lactonizing protein 2260903..2261973 Chlorobium limicola DSM 245 6355029 YP_001944060.1 CDS Clim_2052 NC_010803.1 2261961 2263409 D TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: cph:Cpha266_2093 O-succinylbenzoate-CoA ligase; o-succinylbenzoate--CoA ligase 2261961..2263409 Chlorobium limicola DSM 245 6355030 YP_001944061.1 CDS Clim_2053 NC_010803.1 2263531 2264121 R KEGG: cph:Cpha266_2094 hypothetical protein; hypothetical protein complement(2263531..2264121) Chlorobium limicola DSM 245 6355031 YP_001944062.1 CDS Clim_2054 NC_010803.1 2264093 2264839 R PFAM: dihydrodipicolinate reductase; KEGG: plt:Plut_0324 dihydrodipicolinate reductase; Dihydrodipicolinate reductase complement(2264093..2264839) Chlorobium limicola DSM 245 6355032 YP_001944063.1 CDS Clim_2055 NC_010803.1 2264877 2265773 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cph:Cpha266_2096 chromosome segregation DNA-binding protein; parB-like partition protein complement(2264877..2265773) Chlorobium limicola DSM 245 6355033 YP_001944064.1 CDS Clim_2056 NC_010803.1 2265790 2266587 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cph:Cpha266_2097 chromosome segregation ATPase; Cobyrinic acid ac-diamide synthase complement(2265790..2266587) Chlorobium limicola DSM 245 6355034 YP_001944065.1 CDS Clim_2057 NC_010803.1 2266673 2267278 D TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: cch:Cag_1802 methylpurine-DNA glycosylase (MPG); DNA-3-methyladenine glycosylase 2266673..2267278 Chlorobium limicola DSM 245 6355035 YP_001944066.1 CDS Clim_2058 NC_010803.1 2267560 2268942 D TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: cph:Cpha266_2099 magnesium transporter; magnesium transporter 2267560..2268942 Chlorobium limicola DSM 245 6355036 YP_001944067.1 CDS Clim_2059 NC_010803.1 2268980 2270656 D PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: plt:Plut_0319 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 2268980..2270656 Chlorobium limicola DSM 245 6355037 YP_001944068.1 CDS mnmA NC_010803.1 2270660 2271736 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2270660..2271736 Chlorobium limicola DSM 245 6355038 YP_001944069.1 CDS Clim_2061 NC_010803.1 2271751 2272422 D PFAM: phospholipase/Carboxylesterase; KEGG: cph:Cpha266_2101 phospholipase/carboxylesterase; phospholipase/carboxylesterase 2271751..2272422 Chlorobium limicola DSM 245 6355039 YP_001944070.1 CDS metH NC_010803.1 2272514 2276200 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 2272514..2276200 Chlorobium limicola DSM 245 6355040 YP_001944071.1 CDS Clim_2063 NC_010803.1 2276376 2276837 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cch:Cag_0205 bacterioferritin comigratory protein, thiol peroxidase; alkyl hydroperoxide reductase 2276376..2276837 Chlorobium limicola DSM 245 6355041 YP_001944072.1 CDS Clim_2064 NC_010803.1 2277070 2278677 D KEGG: cph:Cpha266_2104 cytochrome c family protein; cytochrome c family protein 2277070..2278677 Chlorobium limicola DSM 245 6355042 YP_001944073.1 CDS Clim_2065 NC_010803.1 2278674 2279279 D PFAM: cytochrome B561; KEGG: cph:Cpha266_2105 cytochrome b561; cytochrome B561 2278674..2279279 Chlorobium limicola DSM 245 6355043 YP_001944074.1 CDS Clim_2066 NC_010803.1 2279352 2279930 R hypothetical protein complement(2279352..2279930) Chlorobium limicola DSM 245 6355044 YP_001944075.1 CDS Clim_2067 NC_010803.1 2279990 2280457 R KEGG: ppd:Ppro_0225 hypothetical protein; hypothetical protein complement(2279990..2280457) Chlorobium limicola DSM 245 6355045 YP_001944076.1 CDS Clim_2068 NC_010803.1 2280462 2280932 R KEGG: cph:Cpha266_2141 hypothetical protein; hypothetical protein complement(2280462..2280932) Chlorobium limicola DSM 245 6355046 YP_001944077.1 CDS Clim_2069 NC_010803.1 2280937 2282619 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cph:Cpha266_2142 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain 1 protein complement(2280937..2282619) Chlorobium limicola DSM 245 6355047 YP_001944078.1 CDS Clim_2070 NC_010803.1 2282634 2283359 R KEGG: cph:Cpha266_2143 hypothetical protein; hypothetical protein complement(2282634..2283359) Chlorobium limicola DSM 245 6355048 YP_001944079.1 CDS Clim_2071 NC_010803.1 2283635 2284225 R KEGG: pvi:Cvib_0378 hypothetical protein; hypothetical protein complement(2283635..2284225) Chlorobium limicola DSM 245 6355049 YP_001944080.1 CDS Clim_2072 NC_010803.1 2284267 2284998 R PFAM: protein of unknown function DUF541; KEGG: cph:Cpha266_2145 protein of unknown function DUF541; hypothetical protein complement(2284267..2284998) Chlorobium limicola DSM 245 6355050 YP_001944081.1 CDS Clim_2073 NC_010803.1 2285022 2285678 R KEGG: cph:Cpha266_2146 hypothetical protein; hypothetical protein complement(2285022..2285678) Chlorobium limicola DSM 245 6355051 YP_001944082.1 CDS Clim_2074 NC_010803.1 2285942 2286607 R KEGG: cph:Cpha266_2147 hypothetical protein; hypothetical protein complement(2285942..2286607) Chlorobium limicola DSM 245 6355052 YP_001944083.1 CDS Clim_2075 NC_010803.1 2287301 2288140 D TIGRFAM: 6-phosphogluconolactonase; KEGG: cph:Cpha266_2149 6-phosphogluconolactonase; 6-phosphogluconolactonase 2287301..2288140 Chlorobium limicola DSM 245 6355053 YP_001944084.1 CDS Clim_2076 NC_010803.1 2288108 2289538 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(2288108..2289538) Chlorobium limicola DSM 245 6355054 YP_001944085.1 CDS Clim_2077 NC_010803.1 2289553 2290452 R similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase complement(2289553..2290452) Chlorobium limicola DSM 245 6355055 YP_001944086.1 CDS Clim_2078 NC_010803.1 2290473 2293445 R KEGG: cph:Cpha266_2152 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; multi-sensor hybrid histidine kinase complement(2290473..2293445) Chlorobium limicola DSM 245 6355056 YP_001944087.1 CDS Clim_2079 NC_010803.1 2293451 2294704 R PFAM: domain of unknown function DUF1745; KEGG: cph:Cpha266_2153 domain of unknown function DUF1745; hypothetical protein complement(2293451..2294704) Chlorobium limicola DSM 245 6355057 YP_001944088.1 CDS Clim_2080 NC_010803.1 2295055 2295774 R PFAM: protein of unknown function DUF541; KEGG: cph:Cpha266_2154 protein of unknown function DUF541; hypothetical protein complement(2295055..2295774) Chlorobium limicola DSM 245 6355058 YP_001944089.1 CDS Clim_2081 NC_010803.1 2295929 2297074 R PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_2155 glycosyl transferase, group 1; group 1 glycosyl transferase complement(2295929..2297074) Chlorobium limicola DSM 245 6355059 YP_001944090.1 CDS Clim_2082 NC_010803.1 2297226 2297690 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: plt:Plut_0303 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein complement(2297226..2297690) Chlorobium limicola DSM 245 6355060 YP_001944091.1 CDS Clim_2083 NC_010803.1 2297828 2298415 R KEGG: cph:Cpha266_0309 outer surface protein; outer surface protein complement(2297828..2298415) Chlorobium limicola DSM 245 6355061 YP_001944092.1 CDS Clim_2084 NC_010803.1 2298559 2299311 R PFAM: Patatin; KEGG: cph:Cpha266_2157 patatin; patatin complement(2298559..2299311) Chlorobium limicola DSM 245 6355062 YP_001944093.1 CDS Clim_2085 NC_010803.1 2299318 2300682 R PFAM: Aldehyde Dehydrogenase_; KEGG: cph:Cpha266_2158 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2299318..2300682) Chlorobium limicola DSM 245 6355063 YP_001944094.1 CDS Clim_2086 NC_010803.1 2300731 2302524 R PFAM: ABC transporter transmembrane region; ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_2159 ABC transporter; ABC transporter complement(2300731..2302524) Chlorobium limicola DSM 245 6355064 YP_001944095.1 CDS Clim_2087 NC_010803.1 2302735 2303481 D PFAM: Integral membrane protein TerC; KEGG: cph:Cpha266_2160 integral membrane protein TerC; integral membrane protein TerC 2302735..2303481 Chlorobium limicola DSM 245 6355065 YP_001944096.1 CDS Clim_2088 NC_010803.1 2303608 2306019 D PFAM: peptidase S16 lon domain protein; KEGG: plt:Plut_0298 ATP-dependent protease; peptidase S16 lon domain-containing protein 2303608..2306019 Chlorobium limicola DSM 245 6355066 YP_001944097.1 CDS Clim_2089 NC_010803.1 2306022 2306918 D KEGG: cph:Cpha266_2161 UspA domain protein; UspA domain-containing protein 2306022..2306918 Chlorobium limicola DSM 245 6355067 YP_001944098.1 CDS Clim_2090 NC_010803.1 2306977 2307768 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cph:Cpha266_2163 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(2306977..2307768) Chlorobium limicola DSM 245 6355068 YP_001944099.1 CDS Clim_2091 NC_010803.1 2307771 2308559 R KEGG: cph:Cpha266_2164 hypothetical protein; hypothetical protein complement(2307771..2308559) Chlorobium limicola DSM 245 6355069 YP_001944100.1 CDS Clim_2093 NC_010803.1 2308897 2310138 D PFAM: peptidase U32; KEGG: cph:Cpha266_2165 peptidase U32; peptidase U32 2308897..2310138 Chlorobium limicola DSM 245 6355071 YP_001944101.1 CDS Clim_2094 NC_010803.1 2310230 2311309 D KEGG: cph:Cpha266_2166 hydrogenase/sulfur reductase, beta subunit; hydrogenase/sulfur reductase subunit beta 2310230..2311309 Chlorobium limicola DSM 245 6355072 YP_001944102.1 CDS Clim_2095 NC_010803.1 2311363 2312187 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cph:Cpha266_2167 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2311363..2312187 Chlorobium limicola DSM 245 6355073 YP_001944103.1 CDS Clim_2096 NC_010803.1 2312200 2312958 D PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cph:Cpha266_2168 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 2312200..2312958 Chlorobium limicola DSM 245 6355074 YP_001944104.1 CDS Clim_2097 NC_010803.1 2312955 2314229 D PFAM: nickel-dependent hydrogenase large subunit; KEGG: cph:Cpha266_2169 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase large subunit 2312955..2314229 Chlorobium limicola DSM 245 6355075 YP_001944105.1 CDS Clim_2098 NC_010803.1 2314270 2315025 R PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: cph:Cpha266_1210 DNA topoisomerase, type IA, zn finger domain protein; DNA topoisomerase type IA zn finger domain-containing protein complement(2314270..2315025) Chlorobium limicola DSM 245 6355076 YP_001944106.1 CDS Clim_2100 NC_010803.1 2315415 2315759 D PFAM: Protein of unknown function DUF1778; KEGG: cph:Cpha266_1211 hypothetical protein; hypothetical protein 2315415..2315759 Chlorobium limicola DSM 245 6355078 YP_001944107.1 CDS Clim_2101 NC_010803.1 2315776 2316276 D PFAM: GCN5-related N-acetyltransferase; KEGG: cph:Cpha266_1212 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2315776..2316276 Chlorobium limicola DSM 245 6355079 YP_001944108.1 CDS Clim_2105 NC_010803.1 2320297 2320524 R KEGG: cph:Cpha266_2113 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(2320297..2320524) Chlorobium limicola DSM 245 6355083 YP_001944109.1 CDS Clim_2106 NC_010803.1 2320841 2324824 R KEGG: vha:VIBHAR_p08265 hypothetical protein; hypothetical protein complement(2320841..2324824) Chlorobium limicola DSM 245 6355084 YP_001944110.1 CDS Clim_2107 NC_010803.1 2324848 2330724 R KEGG: cph:Cpha266_1222 superfamily I DNA and RNA helicase and helicase subunit; superfamily I DNA and RNA helicase and helicase subunit complement(2324848..2330724) Chlorobium limicola DSM 245 6355085 YP_001944111.1 CDS Clim_2108 NC_010803.1 2330854 2330964 R hypothetical protein complement(2330854..2330964) Chlorobium limicola DSM 245 6355086 YP_001944112.1 CDS Clim_2109 NC_010803.1 2331012 2331407 R TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: cph:Cpha266_2176 death-on-curing family protein; death-on-curing family protein complement(2331012..2331407) Chlorobium limicola DSM 245 6355087 YP_001944113.1 CDS Clim_2110 NC_010803.1 2331404 2331625 R TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: cph:Cpha266_2175 tMazE family transcriptional regulator; MazE family transcriptional regulator complement(2331404..2331625) Chlorobium limicola DSM 245 6355088 YP_001944114.1 CDS Clim_2111 NC_010803.1 2331698 2332561 R KEGG: fjo:Fjoh_0971 hypothetical protein; hypothetical protein complement(2331698..2332561) Chlorobium limicola DSM 245 6355089 YP_001944115.1 CDS Clim_2112 NC_010803.1 2332810 2332971 R hypothetical protein complement(2332810..2332971) Chlorobium limicola DSM 245 6355090 YP_001944116.1 CDS Clim_2113 NC_010803.1 2333317 2333745 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: cph:Cpha266_2267 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(2333317..2333745) Chlorobium limicola DSM 245 6355091 YP_001944117.1 CDS Clim_2114 NC_010803.1 2333888 2334973 R PFAM: MscS Mechanosensitive ion channel; KEGG: pvi:Cvib_0357 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(2333888..2334973) Chlorobium limicola DSM 245 6355092 YP_001944118.1 CDS Clim_2115 NC_010803.1 2335000 2336193 R PFAM: FAD dependent oxidoreductase; KEGG: cph:Cpha266_2269 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2335000..2336193) Chlorobium limicola DSM 245 6355093 YP_001944119.1 CDS Clim_2116 NC_010803.1 2336370 2337044 R KEGG: cph:Cpha266_2271 acetyltransferase, CysE/LacA/LpxA/NodL family; carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein complement(2336370..2337044) Chlorobium limicola DSM 245 6355094 YP_001944120.1 CDS Clim_2117 NC_010803.1 2337355 2338089 D PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cte:CT1901 ABC transporter, ATP-binding protein; ABC transporter 2337355..2338089 Chlorobium limicola DSM 245 6355095 YP_001944121.1 CDS Clim_2118 NC_010803.1 2338233 2339741 D PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT1903 BchE/P-methylase family protein; radical SAM protein 2338233..2339741 Chlorobium limicola DSM 245 6355096 YP_001944122.1 CDS Clim_2119 NC_010803.1 2339899 2340171 D PFAM: RNP-1 like RNA-binding protein; KEGG: cch:Cag_1551 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 2339899..2340171 Chlorobium limicola DSM 245 6355097 YP_001944123.1 CDS Clim_2120 NC_010803.1 2340375 2341778 D SMART: metal-dependent phosphohydrolase HD region; KEGG: cph:Cpha266_2274 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2340375..2341778 Chlorobium limicola DSM 245 6355098 YP_001944124.1 CDS Clim_2121 NC_010803.1 2341852 2342181 D KEGG: cph:Cpha266_2275 hypothetical protein; hypothetical protein 2341852..2342181 Chlorobium limicola DSM 245 6355099 YP_001944125.1 CDS Clim_2122 NC_010803.1 2342185 2342976 D PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_2276 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2342185..2342976 Chlorobium limicola DSM 245 6355100 YP_001944126.1 CDS Clim_2123 NC_010803.1 2343005 2344309 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2343005..2344309) Chlorobium limicola DSM 245 6355101 YP_001944127.1 CDS rpsU NC_010803.1 2344537 2344734 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(2344537..2344734) Chlorobium limicola DSM 245 6355102 YP_001944128.1 CDS Clim_2125 NC_010803.1 2344761 2345321 R KEGG: cph:Cpha266_2279 hypothetical protein; hypothetical protein complement(2344761..2345321) Chlorobium limicola DSM 245 6355919 YP_001944129.1 CDS Clim_2126 NC_010803.1 2345665 2347038 D PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cph:Cpha266_2280 cysteine synthase; pyridoxal-5'-phosphate-dependent protein subunit beta 2345665..2347038 Chlorobium limicola DSM 245 6355920 YP_001944130.1 CDS Clim_2127 NC_010803.1 2347039 2347203 D hypothetical protein 2347039..2347203 Chlorobium limicola DSM 245 6355921 YP_001944131.1 CDS Clim_2128 NC_010803.1 2347278 2348402 D KEGG: cph:Cpha266_2284 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 2347278..2348402 Chlorobium limicola DSM 245 6355922 YP_001944132.1 CDS Clim_2129 NC_010803.1 2348424 2348975 D SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: cph:Cpha266_2285 helix-hairpin-helix motif; helix-hairpin-helix DNA-binding class 1 2348424..2348975 Chlorobium limicola DSM 245 6355923 YP_001944133.1 CDS Clim_2130 NC_010803.1 2348976 2349836 D KEGG: cph:Cpha266_2286 hypothetical protein; hypothetical protein 2348976..2349836 Chlorobium limicola DSM 245 6355924 YP_001944134.1 CDS Clim_2131 NC_010803.1 2349944 2350972 R TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: cch:Cag_0282 aspartate-semialdehyde dehydrogenase, USG-1 related; aspartate-semialdehyde dehydrogenase complement(2349944..2350972) Chlorobium limicola DSM 245 6355925 YP_001944135.1 CDS Clim_2132 NC_010803.1 2350992 2352035 R TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: plt:Plut_0276 dihydrouridine synthase TIM-barrel protein nifR3; nifR3 family TIM-barrel protein complement(2350992..2352035) Chlorobium limicola DSM 245 6355926 YP_001944136.1 CDS recA NC_010803.1 2352038 2353090 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(2352038..2353090) Chlorobium limicola DSM 245 6355927 YP_001944137.1 CDS Clim_2134 NC_010803.1 2353128 2354117 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KR domain protein; KEGG: cph:Cpha266_2290 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(2353128..2354117) Chlorobium limicola DSM 245 6355928 YP_001944138.1 CDS Clim_2135 NC_010803.1 2354160 2354351 D hypothetical protein 2354160..2354351 Chlorobium limicola DSM 245 6355929 YP_001944139.1 CDS Clim_2136 NC_010803.1 2354324 2355562 D PFAM: peptidase M16 domain protein; KEGG: cph:Cpha266_2291 peptidase M16 domain protein; peptidase M16 domain-containing protein 2354324..2355562 Chlorobium limicola DSM 245 6355930 YP_001944140.1 CDS Clim_2137 NC_010803.1 2355662 2356945 D TIGRFAM: trigger factor; PFAM: trigger factor domain protein; trigger factor domain; KEGG: cph:Cpha266_2292 trigger factor; trigger factor 2355662..2356945 Chlorobium limicola DSM 245 6355931 YP_001944141.1 CDS Clim_2138 NC_010803.1 2357056 2357436 R TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: pvi:Cvib_0336 holo-acyl-carrier-protein synthase; holo-acyl-carrier-protein synthase complement(2357056..2357436) Chlorobium limicola DSM 245 6355932 YP_001944142.1 CDS Clim_2139 NC_010803.1 2357442 2358317 R KEGG: cph:Cpha266_2293 nicotinate-nucleotide pyrophosphorylase [carboxylating]; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(2357442..2358317) Chlorobium limicola DSM 245 6355933 YP_001944143.1 CDS Clim_2140 NC_010803.1 2358489 2358866 D TIGRFAM: dihydroneopterin aldolase; KEGG: cph:Cpha266_2294 dihydroneopterin aldolase; dihydroneopterin aldolase 2358489..2358866 Chlorobium limicola DSM 245 6355934 YP_001944144.1 CDS Clim_2141 NC_010803.1 2358871 2359383 D KEGG: plt:Plut_0268 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2358871..2359383 Chlorobium limicola DSM 245 6355935 YP_001944145.1 CDS Clim_2142 NC_010803.1 2359509 2361071 D PFAM: transposase IS4 family protein; KEGG: amt:Amet_3130 transposase, IS4 family protein; transposase IS4 family protein 2359509..2361071 Chlorobium limicola DSM 245 6355936 YP_001944146.1 CDS Clim_2143 NC_010803.1 2361630 2362784 R KEGG: plt:Plut_0267 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA complement(2361630..2362784) Chlorobium limicola DSM 245 6355937 YP_001944147.1 CDS Clim_2144 NC_010803.1 2362798 2364594 R KEGG: cph:Cpha266_2298 hypothetical protein; hypothetical protein complement(2362798..2364594) Chlorobium limicola DSM 245 6355938 YP_001944148.1 CDS Clim_2145 NC_010803.1 2364868 2365110 R PFAM: bacteriochlorophyll C binding protein; KEGG: pvi:Cvib_0330 bacteriochlorophyll C binding protein; bacteriochlorophyll C binding protein complement(2364868..2365110) Chlorobium limicola DSM 245 6355939 YP_001944149.1 CDS Clim_2146 NC_010803.1 2365239 2365658 R KEGG: cph:Cpha266_2300 chlorosome envelope protein C; chlorosome envelope protein C complement(2365239..2365658) Chlorobium limicola DSM 245 6355940 YP_001944150.1 CDS Clim_2147 NC_010803.1 2365798 2367015 R KEGG: cph:Cpha266_2301 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA complement(2365798..2367015) Chlorobium limicola DSM 245 6355941 YP_001944151.1 CDS Clim_2148 NC_010803.1 2367407 2368204 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cph:Cpha266_2302 dihydroorotate oxidase B, electron transfer subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2367407..2368204 Chlorobium limicola DSM 245 6355942 YP_001944152.1 CDS Clim_2149 NC_010803.1 2368302 2368799 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cph:Cpha266_2303 single-strand binding protein; single-strand binding protein 2368302..2368799 Chlorobium limicola DSM 245 6355943 YP_001944153.1 CDS Clim_2150 NC_010803.1 2368873 2369919 D TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: cph:Cpha266_2304 DNA polymerase III, delta subunit; DNA polymerase III subunit delta 2368873..2369919 Chlorobium limicola DSM 245 6355944 YP_001944154.1 CDS Clim_2151 NC_010803.1 2370287 2371297 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cph:Cpha266_2305 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(2370287..2371297) Chlorobium limicola DSM 245 6355945 YP_001944155.1 CDS Clim_2152 NC_010803.1 2371513 2372727 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; KEGG: cph:Cpha266_2306 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 2371513..2372727 Chlorobium limicola DSM 245 6355946 YP_001944156.1 CDS Clim_2153 NC_010803.1 2373062 2375548 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cph:Cpha266_2310 TonB-dependent receptor; TonB-dependent receptor 2373062..2375548 Chlorobium limicola DSM 245 6355947 YP_001944157.1 CDS Clim_2154 NC_010803.1 2375851 2379654 D KEGG: plt:Plut_0255 magnesium-chelatase, subunit H; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase; magnesium chelatase subunit H 2375851..2379654 Chlorobium limicola DSM 245 6355948 YP_001944158.1 CDS Clim_2155 NC_010803.1 2379684 2380130 D KEGG: cph:Cpha266_2312 hypothetical protein; hypothetical protein 2379684..2380130 Chlorobium limicola DSM 245 6355949 YP_001944159.1 CDS Clim_2156 NC_010803.1 2380276 2384109 D catalyzes the formation of Mg-protoporphyrin IX from protoporphyrin IX and Mg(2+); first committed step of chlorophyll biosynthesis; magnesium chelatase subunit H 2380276..2384109 Chlorobium limicola DSM 245 6355950 YP_001944160.1 CDS Clim_2157 NC_010803.1 2384155 2384853 D catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine; Mg-protoporphyrin IX methyl transferase 2384155..2384853 Chlorobium limicola DSM 245 6355951 YP_001944161.1 CDS Clim_2158 NC_010803.1 2385002 2386642 D KEGG: cph:Cpha266_2315 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 2385002..2386642 Chlorobium limicola DSM 245 6355952 YP_001944162.1 CDS Clim_2159 NC_010803.1 2386722 2387141 R PFAM: heat shock protein Hsp20; KEGG: cph:Cpha266_2316 heat shock protein HSP20; heat shock protein Hsp20 complement(2386722..2387141) Chlorobium limicola DSM 245 6355953 YP_001944163.1 CDS Clim_2160 NC_010803.1 2387353 2399217 R PFAM: Hemolysin-type calcium-binding region; KEGG: cph:Cpha266_2335 hemolysin-type calcium-binding region; hemolysin-type calcium-binding protein complement(2387353..2399217) Chlorobium limicola DSM 245 6355954 YP_001944164.1 CDS Clim_2161 NC_010803.1 2399824 2400735 R KEGG: cph:Cpha266_2351 hypothetical protein; hypothetical protein complement(2399824..2400735) Chlorobium limicola DSM 245 6355955 YP_001944165.1 CDS Clim_2162 NC_010803.1 2400766 2401431 R KEGG: plt:Plut_0248 hypothetical protein; hypothetical protein complement(2400766..2401431) Chlorobium limicola DSM 245 6355956 YP_001944166.1 CDS Clim_2163 NC_010803.1 2401631 2402992 D PFAM: Peptidase M23; KEGG: plt:Plut_0247 peptidase, M23/M37 family; peptidase M23 2401631..2402992 Chlorobium limicola DSM 245 6355957 YP_001944167.1 CDS Clim_2164 NC_010803.1 2403066 2403479 R PFAM: Class I peptide chain release factor; KEGG: vfi:VFA1155 hypothetical protein; class I peptide chain release factor complement(2403066..2403479) Chlorobium limicola DSM 245 6355958 YP_001944168.1 CDS Clim_2165 NC_010803.1 2403508 2404098 R KEGG: cph:Cpha266_1892 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase complement(2403508..2404098) Chlorobium limicola DSM 245 6355959 YP_001944169.1 CDS Clim_2166 NC_010803.1 2404259 2404699 D PFAM: protein of unknown function DUF937; KEGG: cph:Cpha266_2353 protein of unknown function DUF937; hypothetical protein 2404259..2404699 Chlorobium limicola DSM 245 6355960 YP_001944170.1 CDS Clim_2167 NC_010803.1 2404773 2405723 R PFAM: hypothetical protein; KEGG: cph:Cpha266_2355 hypothetical protein; hypothetical protein complement(2404773..2405723) Chlorobium limicola DSM 245 6355961 YP_001944171.1 CDS Clim_2168 NC_010803.1 2405919 2407094 R PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_2356 glycosyl transferase, family 2; family 2 glycosyl transferase complement(2405919..2407094) Chlorobium limicola DSM 245 6355962 YP_001944172.1 CDS hisG NC_010803.1 2407165 2408043 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(2407165..2408043) Chlorobium limicola DSM 245 6355963 YP_001944173.1 CDS Clim_2170 NC_010803.1 2408065 2408823 R PFAM: metallophosphoesterase; KEGG: cph:Cpha266_2358 metallophosphoesterase; metallophosphoesterase complement(2408065..2408823) Chlorobium limicola DSM 245 6355964 YP_001944174.1 CDS Clim_2171 NC_010803.1 2408827 2409540 R PFAM: phosphatidate cytidylyltransferase; KEGG: cph:Cpha266_2359 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(2408827..2409540) Chlorobium limicola DSM 245 6355965 YP_001944175.1 CDS Clim_2172 NC_010803.1 2409698 2410699 R catalyzes the synthesis of bacteriochlorophyll c which is the primary pigment in the chlorosomes of the photosynthetic green bacteria; bacteriochlorophyll c synthase complement(2409698..2410699) Chlorobium limicola DSM 245 6355966 YP_001944176.1 CDS Clim_2173 NC_010803.1 2410823 2412151 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(2410823..2412151) Chlorobium limicola DSM 245 6355967 YP_001944177.1 CDS Clim_2174 NC_010803.1 2412301 2412912 R PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cph:Cpha266_2362 nitrogen-fixing NifU domain protein; nitrogen-fixing NifU domain-containing protein complement(2412301..2412912) Chlorobium limicola DSM 245 6355968 YP_001944178.1 CDS Clim_2175 NC_010803.1 2412896 2414092 R PFAM: aminotransferase class V; KEGG: pvi:Cvib_0301 aminotransferase, class V; class V aminotransferase complement(2412896..2414092) Chlorobium limicola DSM 245 6355969 YP_001944179.1 CDS Clim_2176 NC_010803.1 2414159 2415088 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cph:Cpha266_2364 cysteine synthase; cysteine synthase A complement(2414159..2415088) Chlorobium limicola DSM 245 6355970 YP_001944180.1 CDS Clim_2177 NC_010803.1 2415112 2415825 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cph:Cpha266_2365 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2415112..2415825) Chlorobium limicola DSM 245 6355971 YP_001944181.1 CDS Clim_2178 NC_010803.1 2415989 2416897 R KEGG: cph:Cpha266_2366 helix-turn-helix domain protein; helix-turn-helix domain-containing protein complement(2415989..2416897) Chlorobium limicola DSM 245 6355972 YP_001944182.1 CDS Clim_2179 NC_010803.1 2417065 2419158 R KEGG: plt:Plut_0232 hypothetical protein; hypothetical protein complement(2417065..2419158) Chlorobium limicola DSM 245 6355973 YP_001944183.1 CDS Clim_2180 NC_010803.1 2419337 2419759 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2419337..2419759 Chlorobium limicola DSM 245 6355974 YP_001944184.1 CDS Clim_2181 NC_010803.1 2419916 2421046 R PFAM: protein of unknown function UPF0118; KEGG: pvi:Cvib_0294 protein of unknown function UPF0118; hypothetical protein complement(2419916..2421046) Chlorobium limicola DSM 245 6355975 YP_001944185.1 CDS Clim_2182 NC_010803.1 2421054 2421800 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(2421054..2421800) Chlorobium limicola DSM 245 6355976 YP_001944186.1 CDS Clim_2183 NC_010803.1 2421808 2422500 R PFAM: phosphoribosyltransferase; KEGG: cph:Cpha266_2371 phosphoribosyltransferase; phosphoribosyltransferase complement(2421808..2422500) Chlorobium limicola DSM 245 6355977 YP_001944187.1 CDS Clim_2184 NC_010803.1 2422516 2423502 R PFAM: ROK family protein; KEGG: cph:Cpha266_2372 ROK family protein; ROK family protein complement(2422516..2423502) Chlorobium limicola DSM 245 6355978 YP_001944188.1 CDS Clim_2185 NC_010803.1 2423522 2424319 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(2423522..2424319) Chlorobium limicola DSM 245 6355979 YP_001944189.1 CDS Clim_2186 NC_010803.1 2424323 2426971 R KEGG: cph:Cpha266_2374 hypothetical protein; hypothetical protein complement(2424323..2426971) Chlorobium limicola DSM 245 6355980 YP_001944190.1 CDS Clim_2187 NC_010803.1 2427008 2428180 R KEGG: cph:Cpha266_2375 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(2427008..2428180) Chlorobium limicola DSM 245 6355981 YP_001944191.1 CDS Clim_2188 NC_010803.1 2428173 2428757 R TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: cph:Cpha266_2376 histidinol-phosphate phosphatase family protein; histidinol-phosphate phosphatase family protein complement(2428173..2428757) Chlorobium limicola DSM 245 6355982 YP_001944192.1 CDS Clim_2189 NC_010803.1 2428763 2430232 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(2428763..2430232) Chlorobium limicola DSM 245 6355983 YP_001944193.1 CDS Clim_2190 NC_010803.1 2430398 2431444 D KEGG: cph:Cpha266_2378 hypothetical protein; hypothetical protein 2430398..2431444 Chlorobium limicola DSM 245 6355984 YP_001944194.1 CDS Clim_2191 NC_010803.1 2431532 2432104 D TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cph:Cpha266_2379 bacteriochlorophyll 4-vinyl reductase; bacteriochlorophyll 4-vinyl reductase 2431532..2432104 Chlorobium limicola DSM 245 6355985 YP_001944195.1 CDS chlL NC_010803.1 2432201 2433028 R light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production; protochlorophyllide reductase iron-sulfur ATP-binding protein complement(2432201..2433028) Chlorobium limicola DSM 245 6355986 YP_001944196.1 CDS Clim_2193 NC_010803.1 2433064 2434671 R light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit B complement(2433064..2434671) Chlorobium limicola DSM 245 6355987 YP_001944197.1 CDS Clim_2194 NC_010803.1 2434711 2435973 R light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit N complement(2434711..2435973) Chlorobium limicola DSM 245 6355988 YP_001944198.1 CDS Clim_2195 NC_010803.1 2436102 2436407 R PFAM: protein of unknown function DUF77; KEGG: cph:Cpha266_2389 protein of unknown function DUF77; hypothetical protein complement(2436102..2436407) Chlorobium limicola DSM 245 6355989 YP_001944199.1 CDS Clim_2196 NC_010803.1 2436428 2437732 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(2436428..2437732) Chlorobium limicola DSM 245 6355990 YP_001944200.1 CDS engB NC_010803.1 2437744 2438322 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(2437744..2438322) Chlorobium limicola DSM 245 6355991 YP_001944201.1 CDS cysS NC_010803.1 2438481 2439935 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2438481..2439935 Chlorobium limicola DSM 245 6355992 YP_001944202.1 CDS Clim_2199 NC_010803.1 2439979 2441088 R PFAM: Nucleotidyl transferase; KEGG: cph:Cpha266_2393 mannose-1-phosphate guanylyltransferase (GDP); mannose-1-phosphate guanylyltransferase complement(2439979..2441088) Chlorobium limicola DSM 245 6355993 YP_001944203.1 CDS gidB NC_010803.1 2441226 2441888 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 2441226..2441888 Chlorobium limicola DSM 245 6355994 YP_001944204.1 CDS rplQ NC_010803.1 2441952 2442407 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(2441952..2442407) Chlorobium limicola DSM 245 6355995 YP_001944205.1 CDS Clim_2202 NC_010803.1 2442455 2443441 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(2442455..2443441) Chlorobium limicola DSM 245 6355996 YP_001944206.1 CDS rpsD NC_010803.1 2443471 2444082 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(2443471..2444082) Chlorobium limicola DSM 245 6355997 YP_001944207.1 CDS Clim_2204 NC_010803.1 2444120 2444503 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(2444120..2444503) Chlorobium limicola DSM 245 6355145 YP_001944208.1 CDS rpsM NC_010803.1 2444547 2444924 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(2444547..2444924) Chlorobium limicola DSM 245 6355227 YP_001944209.1 CDS rpmJ NC_010803.1 2444960 2445076 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(2444960..2445076) Chlorobium limicola DSM 245 6355228 YP_001944210.1 CDS infA NC_010803.1 2445190 2445408 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2445190..2445408) Chlorobium limicola DSM 245 6355229 YP_001944211.1 CDS Clim_2208 NC_010803.1 2445448 2446245 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: cph:Cpha266_2402 methionine aminopeptidase, type I; methionine aminopeptidase complement(2445448..2446245) Chlorobium limicola DSM 245 6355230 YP_001944212.1 CDS secY NC_010803.1 2446256 2447587 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(2446256..2447587) Chlorobium limicola DSM 245 6355231 YP_001944213.1 CDS rplO NC_010803.1 2447606 2448169 R late assembly protein; 50S ribosomal protein L15 complement(2447606..2448169) Chlorobium limicola DSM 245 6355232 YP_001944214.1 CDS rpmD NC_010803.1 2448202 2448387 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(2448202..2448387) Chlorobium limicola DSM 245 6355233 YP_001944215.1 CDS rpsE NC_010803.1 2448407 2448925 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(2448407..2448925) Chlorobium limicola DSM 245 6355234 YP_001944216.1 CDS rplR NC_010803.1 2448948 2449307 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(2448948..2449307) Chlorobium limicola DSM 245 6355235 YP_001944217.1 CDS rplF NC_010803.1 2449363 2449902 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(2449363..2449902) Chlorobium limicola DSM 245 6355236 YP_001944218.1 CDS rpsH NC_010803.1 2449931 2450326 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(2449931..2450326) Chlorobium limicola DSM 245 6355237 YP_001944219.1 CDS rpsN NC_010803.1 2450391 2450660 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(2450391..2450660) Chlorobium limicola DSM 245 6355238 YP_001944220.1 CDS rplE NC_010803.1 2450679 2451266 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(2450679..2451266) Chlorobium limicola DSM 245 6355239 YP_001944221.1 CDS rplX NC_010803.1 2451323 2451565 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(2451323..2451565) Chlorobium limicola DSM 245 6355240 YP_001944222.1 CDS rplN NC_010803.1 2451681 2452049 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(2451681..2452049) Chlorobium limicola DSM 245 6355242 YP_001944223.1 CDS rpsQ NC_010803.1 2452086 2452385 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(2452086..2452385) Chlorobium limicola DSM 245 6355243 YP_001944224.1 CDS Clim_2221 NC_010803.1 2452415 2452621 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(2452415..2452621) Chlorobium limicola DSM 245 6355244 YP_001944225.1 CDS rplP NC_010803.1 2452655 2453074 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(2452655..2453074) Chlorobium limicola DSM 245 6355245 YP_001944226.1 CDS rpsC NC_010803.1 2453117 2453872 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(2453117..2453872) Chlorobium limicola DSM 245 6355246 YP_001944227.1 CDS rplV NC_010803.1 2453893 2454249 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(2453893..2454249) Chlorobium limicola DSM 245 6355247 YP_001944228.1 CDS rpsS NC_010803.1 2454278 2454574 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(2454278..2454574) Chlorobium limicola DSM 245 6355248 YP_001944229.1 CDS rplB NC_010803.1 2454608 2455402 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(2454608..2455402) Chlorobium limicola DSM 245 6355249 YP_001944230.1 CDS rplW NC_010803.1 2455478 2455789 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(2455478..2455789) Chlorobium limicola DSM 245 6355250 YP_001944231.1 CDS rplD NC_010803.1 2455822 2456448 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(2455822..2456448) Chlorobium limicola DSM 245 6355251 YP_001944232.1 CDS rplC NC_010803.1 2456468 2457097 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(2456468..2457097) Chlorobium limicola DSM 245 6355252 YP_001944233.1 CDS rpsJ NC_010803.1 2457121 2457432 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(2457121..2457432) Chlorobium limicola DSM 245 6355253 YP_001944234.1 CDS Clim_2231 NC_010803.1 2457514 2458695 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(2457514..2458695) Chlorobium limicola DSM 245 6355254 YP_001944235.1 CDS Clim_2232 NC_010803.1 2458764 2460878 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(2458764..2460878) Chlorobium limicola DSM 245 6355255 YP_001944236.1 CDS Clim_2233 NC_010803.1 2460921 2461388 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(2460921..2461388) Chlorobium limicola DSM 245 6355256 YP_001944237.1 CDS rpsL NC_010803.1 2461415 2461822 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(2461415..2461822) Chlorobium limicola DSM 245 6355257 YP_001944238.1 CDS Clim_2235 NC_010803.1 2462006 2463286 R KEGG: cph:Cpha266_2429 hypothetical protein; hypothetical protein complement(2462006..2463286) Chlorobium limicola DSM 245 6355258 YP_001944239.1 CDS Clim_2236 NC_010803.1 2463662 2464480 R PFAM: acid phosphatase (Class B); KEGG: cph:Cpha266_1069 acid phosphatase (class B); acid phosphatase (Class B) complement(2463662..2464480) Chlorobium limicola DSM 245 6355259 YP_001944240.1 CDS Clim_2237 NC_010803.1 2464666 2465583 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: cph:Cpha266_1679 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein 2464666..2465583 Chlorobium limicola DSM 245 6355260 YP_001944241.1 CDS Clim_2238 NC_010803.1 2465700 2466755 D PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: cte:CT1470 rod shape-determining protein MreB; rod shape-determining protein MreB 2465700..2466755 Chlorobium limicola DSM 245 6355261 YP_001944242.1 CDS Clim_2239 NC_010803.1 2466790 2467128 R TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: plt:Plut_1478 PhnA protein; alkylphosphonate utilization operon protein PhnA complement(2466790..2467128) Chlorobium limicola DSM 245 6355262 YP_001944243.1 CDS Clim_2240 NC_010803.1 2467204 2468274 R PFAM: GTPase EngC; KEGG: cph:Cpha266_1597 GTPase EngC; GTPase EngC complement(2467204..2468274) Chlorobium limicola DSM 245 6355263 YP_001944244.1 CDS Clim_2241 NC_010803.1 2468450 2468875 R KEGG: lin:lin2171 hypothetical protein; hypothetical protein complement(2468450..2468875) Chlorobium limicola DSM 245 6355264 YP_001944245.1 CDS Clim_2242 NC_010803.1 2469317 2469913 R TIGRFAM: mobile mystery protein B; PFAM: filamentation induced by cAMP protein Fic; KEGG: gsu:GSU1391 Fic family protein; mobile mystery protein B complement(2469317..2469913) Chlorobium limicola DSM 245 6355265 YP_001944246.1 CDS Clim_2243 NC_010803.1 2469904 2470362 R TIGRFAM: mobile mystery protein A; PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_1905 XRE family transcriptional regulator; mobile mystery protein A complement(2469904..2470362) Chlorobium limicola DSM 245 6355266 YP_001944247.1 CDS Clim_2244 NC_010803.1 2470903 2471322 R KEGG: cph:Cpha266_1473 hypothetical protein; hypothetical protein complement(2470903..2471322) Chlorobium limicola DSM 245 6355267 YP_001944248.1 CDS Clim_2245 NC_010803.1 2471319 2472452 R KEGG: cph:Cpha266_1474 hypothetical protein; hypothetical protein complement(2471319..2472452) Chlorobium limicola DSM 245 6355268 YP_001944249.1 CDS Clim_2246 NC_010803.1 2472619 2473185 R PFAM: nitroreductase; KEGG: cph:Cpha266_1469 nitroreductase; nitroreductase complement(2472619..2473185) Chlorobium limicola DSM 245 6355269 YP_001944250.1 CDS Clim_2247 NC_010803.1 2473201 2473833 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pvi:Cvib_1055 methyltransferase type 12; type 11 methyltransferase complement(2473201..2473833) Chlorobium limicola DSM 245 6355270 YP_001944251.1 CDS Clim_2248 NC_010803.1 2473849 2474265 R PFAM: thioesterase superfamily protein; KEGG: cph:Cpha266_1470 uncharacterized domain 1; thioesterase superfamily protein complement(2473849..2474265) Chlorobium limicola DSM 245 6355271 YP_001944252.1 CDS Clim_2249 NC_010803.1 2474554 2475096 R hypothetical protein complement(2474554..2475096) Chlorobium limicola DSM 245 6355272 YP_001944253.1 CDS Clim_2250 NC_010803.1 2475298 2476182 R PFAM: Lytic transglycosylase catalytic; KEGG: bfr:BF3910 phage-related protein; lytic transglycosylase complement(2475298..2476182) Chlorobium limicola DSM 245 6355273 YP_001944254.1 CDS Clim_2251 NC_010803.1 2476446 2477246 R KEGG: cph:Cpha266_1471 hypothetical protein; hypothetical protein complement(2476446..2477246) Chlorobium limicola DSM 245 6355274 YP_001944255.1 CDS Clim_2252 NC_010803.1 2477265 2477492 D hypothetical protein 2477265..2477492 Chlorobium limicola DSM 245 6355275 YP_001944256.1 CDS Clim_2253 NC_010803.1 2477510 2478529 D KEGG: cph:Cpha266_1472 hypothetical protein; hypothetical protein 2477510..2478529 Chlorobium limicola DSM 245 6355276 YP_001944257.1 CDS Clim_2254 NC_010803.1 2478732 2479439 R KEGG: aci:ACIAD1306 conserved hypothetical protein; signal peptide; hypothetical protein complement(2478732..2479439) Chlorobium limicola DSM 245 6355277 YP_001944258.1 CDS Clim_2256 NC_010803.1 2480100 2480369 R KEGG: cph:Cpha266_1475 hypothetical protein; hypothetical protein complement(2480100..2480369) Chlorobium limicola DSM 245 6355279 YP_001944259.1 CDS Clim_2257 NC_010803.1 2480457 2481269 R KEGG: mxa:MXAN_6313 lipoprotein; poly(3-hydroxybutyrate) depolymerase-like protein complement(2480457..2481269) Chlorobium limicola DSM 245 6355280 YP_001944260.1 CDS Clim_2258 NC_010803.1 2481590 2482606 D PFAM: regulatory protein ArsR; KEGG: cph:Cpha266_1489 regulatory protein, ArsR; ArsR family transcriptional regulator 2481590..2482606 Chlorobium limicola DSM 245 6355281 YP_001944261.1 CDS Clim_2259 NC_010803.1 2482599 2482829 R KEGG: psb:Psyr_0104 hypothetical protein; hypothetical protein complement(2482599..2482829) Chlorobium limicola DSM 245 6355282 YP_001944262.1 CDS Clim_2260 NC_010803.1 2482994 2486689 R KEGG: ses:SARI_03320 hypothetical protein; hypothetical protein complement(2482994..2486689) Chlorobium limicola DSM 245 6355283 YP_001944263.1 CDS Clim_2261 NC_010803.1 2486790 2488157 D PFAM: transposase IS4 family protein; KEGG: cph:Cpha266_2634 transposase, IS4 family protein; transposase IS4 family protein 2486790..2488157 Chlorobium limicola DSM 245 6355284 YP_001944264.1 CDS Clim_2262 NC_010803.1 2488295 2488885 R KEGG: kpn:KPN_02945 hypothetical protein; hypothetical protein complement(2488295..2488885) Chlorobium limicola DSM 245 6355285 YP_001944265.1 CDS Clim_2263 NC_010803.1 2489065 2489781 R KEGG: fnu:FN1319 DNA primase; hypothetical protein complement(2489065..2489781) Chlorobium limicola DSM 245 6355286 YP_001944266.1 CDS Clim_2264 NC_010803.1 2489978 2490817 R KEGG: hch:HCH_03582 hypothetical protein; hypothetical protein complement(2489978..2490817) Chlorobium limicola DSM 245 6355287 YP_001944267.1 CDS Clim_2265 NC_010803.1 2490993 2491973 R hypothetical protein complement(2490993..2491973) Chlorobium limicola DSM 245 6355288 YP_001944268.1 CDS Clim_2266 NC_010803.1 2492157 2492276 D hypothetical protein 2492157..2492276 Chlorobium limicola DSM 245 6355289 YP_001944269.1 CDS Clim_2267 NC_010803.1 2492473 2493318 R KEGG: cte:CT1692 hypothetical protein; hypothetical protein complement(2492473..2493318) Chlorobium limicola DSM 245 6355290 YP_001944270.1 CDS Clim_2268 NC_010803.1 2493728 2494156 R KEGG: cph:Cpha266_1501 hypothetical protein; hypothetical protein complement(2493728..2494156) Chlorobium limicola DSM 245 6355291 YP_001944271.1 CDS Clim_2269 NC_010803.1 2494456 2496126 R KEGG: pca:Pcar_2730 ATP-dependent DNA helicase; transcriptional regulator complement(2494456..2496126) Chlorobium limicola DSM 245 6355292 YP_001944272.1 CDS Clim_2270 NC_010803.1 2496212 2496445 R KEGG: bja:bll8207 hypothetical protein; hypothetical protein complement(2496212..2496445) Chlorobium limicola DSM 245 6355293 YP_001944273.1 CDS Clim_2271 NC_010803.1 2496591 2497409 R PFAM: Hemolysin-type calcium-binding region; KEGG: bpl:BURPS1106A_2063 type I secretion target repeat protein; hemolysin-type calcium-binding protein complement(2496591..2497409) Chlorobium limicola DSM 245 6355294 YP_001944274.1 CDS Clim_2272 NC_010803.1 2497545 2498912 D PFAM: transposase IS4 family protein; KEGG: cph:Cpha266_2634 transposase, IS4 family protein; transposase IS4 family protein 2497545..2498912 Chlorobium limicola DSM 245 6355295 YP_001944275.1 CDS Clim_2273 NC_010803.1 2499027 2504510 R PFAM: Hemolysin-type calcium-binding region; lipase class 3; FG-GAP repeat protein; SMART: Integrin alpha beta-propellor repeat protein; KEGG: gvi:glr1840 hypothetical protein; FG-GAP repeat-containing protein complement(2499027..2504510) Chlorobium limicola DSM 245 6355296 YP_001944276.1 CDS Clim_2274 NC_010803.1 2505063 2506442 D PFAM: outer membrane efflux protein; KEGG: prw:PsycPRwf_0759 outer membrane efflux protein; outer membrane efflux protein 2505063..2506442 Chlorobium limicola DSM 245 6355297 YP_001944277.1 CDS Clim_2275 NC_010803.1 2506528 2508672 D PFAM: ABC transporter; SMART: AAA ATPase; KEGG: prw:PsycPRwf_0760 ABC transporter; ABC transporter 2506528..2508672 Chlorobium limicola DSM 245 6355298 YP_001944278.1 CDS Clim_2276 NC_010803.1 2508665 2509834 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: prw:PsycPRwf_0761 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein 2508665..2509834 Chlorobium limicola DSM 245 6355299 YP_001944279.1 CDS Clim_2277 NC_010803.1 2509891 2512551 R KEGG: cph:Cpha266_2437 hypothetical protein; hypothetical protein complement(2509891..2512551) Chlorobium limicola DSM 245 6355300 YP_001944280.1 CDS Clim_2278 NC_010803.1 2512749 2514299 R PFAM: polysaccharide biosynthesis protein; KEGG: cph:Cpha266_2438 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(2512749..2514299) Chlorobium limicola DSM 245 6355301 YP_001944281.1 CDS Clim_2279 NC_010803.1 2514296 2515444 R KEGG: cph:Cpha266_2439 glycosyl transferase, group 1; group 1 glycosyl transferase complement(2514296..2515444) Chlorobium limicola DSM 245 6355302 YP_001944282.1 CDS Clim_2280 NC_010803.1 2515452 2516021 R KEGG: cph:Cpha266_2440 hypothetical protein; hypothetical protein complement(2515452..2516021) Chlorobium limicola DSM 245 6355303 YP_001944283.1 CDS Clim_2281 NC_010803.1 2516018 2516866 R PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_2441 glycosyl transferase, family 2; family 2 glycosyl transferase complement(2516018..2516866) Chlorobium limicola DSM 245 6355304 YP_001944284.1 CDS Clim_2282 NC_010803.1 2516863 2518008 R PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_2442 glycosyl transferase, group 1; group 1 glycosyl transferase complement(2516863..2518008) Chlorobium limicola DSM 245 6355305 YP_001944285.1 CDS Clim_2283 NC_010803.1 2518042 2518308 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: cph:Cpha266_2443 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr complement(2518042..2518308) Chlorobium limicola DSM 245 6355306 YP_001944286.1 CDS Clim_2284 NC_010803.1 2518356 2518829 R catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate; acetyltransferase complement(2518356..2518829) Chlorobium limicola DSM 245 6355307 YP_001944287.1 CDS obgE NC_010803.1 2518826 2519842 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(2518826..2519842) Chlorobium limicola DSM 245 6355630 YP_001944288.1 CDS Clim_2286 NC_010803.1 2519974 2520240 D PFAM: Exonuclease VII small subunit; KEGG: cph:Cpha266_2446 exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit 2519974..2520240 Chlorobium limicola DSM 245 6355631 YP_001944289.1 CDS gatB NC_010803.1 2520255 2521682 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(2520255..2521682) Chlorobium limicola DSM 245 6355632 YP_001944290.1 CDS Clim_2288 NC_010803.1 2521746 2522339 R KEGG: cph:Cpha266_2448 hypothetical protein; hypothetical protein complement(2521746..2522339) Chlorobium limicola DSM 245 6355633 YP_001944291.1 CDS Clim_2289 NC_010803.1 2522573 2523898 R PFAM: ATPase AAA; Clp domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_2449 AAA ATPase, central domain protein; ATPase AAA complement(2522573..2523898) Chlorobium limicola DSM 245 6355634 YP_001944292.1 CDS Clim_2290 NC_010803.1 2524235 2524534 R KEGG: cph:Cpha266_2450 hypothetical protein; hypothetical protein complement(2524235..2524534) Chlorobium limicola DSM 245 6355635 YP_001944293.1 CDS Clim_2291 NC_010803.1 2524664 2525686 R PFAM: von Willebrand factor type A; KEGG: cph:Cpha266_2451 von Willebrand factor, type A; von Willebrand factor type A complement(2524664..2525686) Chlorobium limicola DSM 245 6355636 YP_001944294.1 CDS Clim_2292 NC_010803.1 2525729 2526706 R PFAM: von Willebrand factor type A; KEGG: cph:Cpha266_2452 von Willebrand factor, type A; von Willebrand factor type A complement(2525729..2526706) Chlorobium limicola DSM 245 6355637 YP_001944295.1 CDS Clim_2293 NC_010803.1 2526712 2527656 R KEGG: cph:Cpha266_2453 hypothetical protein; hypothetical protein complement(2526712..2527656) Chlorobium limicola DSM 245 6355638 YP_001944296.1 CDS Clim_2294 NC_010803.1 2527640 2528533 R PFAM: protein of unknown function DUF58; SMART: von Willebrand factor type A; KEGG: cph:Cpha266_2454 protein of unknown function DUF58; hypothetical protein complement(2527640..2528533) Chlorobium limicola DSM 245 6355639 YP_001944297.1 CDS Clim_2295 NC_010803.1 2528628 2529626 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: cph:Cpha266_2455 ATPase associated with various cellular activities, AAA_3; ATPase complement(2528628..2529626) Chlorobium limicola DSM 245 6355640 YP_001944298.1 CDS Clim_2296 NC_010803.1 2529693 2529920 R KEGG: cph:Cpha266_2456 hypothetical protein; hypothetical protein complement(2529693..2529920) Chlorobium limicola DSM 245 6355641 YP_001944299.1 CDS Clim_2297 NC_010803.1 2529945 2531006 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 2529945..2531006 Chlorobium limicola DSM 245 6355642 YP_001944300.1 CDS Clim_2298 NC_010803.1 2531089 2531445 D TIGRFAM: preprotein translocase subunit YajC; PFAM: YajC family protein; KEGG: cph:Cpha266_2458 protein translocase subunit YajC; preprotein translocase subunit YajC 2531089..2531445 Chlorobium limicola DSM 245 6355643 YP_001944301.1 CDS Clim_2299 NC_010803.1 2531455 2532564 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 2531455..2532564 Chlorobium limicola DSM 245 6355644 YP_001944302.1 CDS Clim_2300 NC_010803.1 2532608 2533747 D PFAM: aminotransferase class V; KEGG: cph:Cpha266_2460 serine--glyoxylate transaminase; serine--glyoxylate transaminase 2532608..2533747 Chlorobium limicola DSM 245 6355645 YP_001944303.1 CDS Clim_2301 NC_010803.1 2533890 2534555 D KEGG: cph:Cpha266_2461 hypothetical protein; hypothetical protein 2533890..2534555 Chlorobium limicola DSM 245 6355646 YP_001944304.1 CDS Clim_2302 NC_010803.1 2534562 2535977 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_2462 radical SAM domain protein; radical SAM protein 2534562..2535977 Chlorobium limicola DSM 245 6355647 YP_001944305.1 CDS Clim_2303 NC_010803.1 2536080 2536511 D PFAM: cytochrome c class I; KEGG: cph:Cpha266_2463 cytochrome c, class I; cytochrome c class I 2536080..2536511 Chlorobium limicola DSM 245 6355648 YP_001944306.1 CDS Clim_2304 NC_010803.1 2536734 2537057 D PFAM: cytochrome c class I; KEGG: cph:Cpha266_2464 cytochrome c, class I; cytochrome c class I 2536734..2537057 Chlorobium limicola DSM 245 6355649 YP_001944307.1 CDS Clim_2305 NC_010803.1 2537242 2537502 D KEGG: cph:Cpha266_2465 MtN3 and saliva related transmembrane protein; MtN3 and saliva related transmembrane protein 2537242..2537502 Chlorobium limicola DSM 245 6355650 YP_001944308.1 CDS Clim_2306 NC_010803.1 2537612 2538412 D KEGG: cph:Cpha266_2466 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 2537612..2538412 Chlorobium limicola DSM 245 6355651 YP_001944309.1 CDS Clim_2307 NC_010803.1 2538432 2539763 D KEGG: cph:Cpha266_2467 hypothetical protein; hypothetical protein 2538432..2539763 Chlorobium limicola DSM 245 6355652 YP_001944310.1 CDS Clim_2308 NC_010803.1 2539785 2541020 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: cph:Cpha266_2468 molybdopterin molybdochelatase; molybdenum cofactor synthesis domain-containing protein complement(2539785..2541020) Chlorobium limicola DSM 245 6355653 YP_001944311.1 CDS moaC NC_010803.1 2541017 2541958 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA complement(2541017..2541958) Chlorobium limicola DSM 245 6355654 YP_001944312.1 CDS Clim_2310 NC_010803.1 2541992 2542822 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cph:Cpha266_2470 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(2541992..2542822) Chlorobium limicola DSM 245 6355655 YP_001944313.1 CDS Clim_2311 NC_010803.1 2542911 2543222 R KEGG: plt:Plut_0145 hypothetical protein; hypothetical protein complement(2542911..2543222) Chlorobium limicola DSM 245 6355656 YP_001944314.1 CDS Clim_2312 NC_010803.1 2543440 2543610 D KEGG: plt:Plut_0144 Ric1 protein; Ric1 protein 2543440..2543610 Chlorobium limicola DSM 245 6355657 YP_001944315.1 CDS Clim_2313 NC_010803.1 2543790 2544902 D in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; MobB is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA 2543790..2544902 Chlorobium limicola DSM 245 6355658 YP_001944316.1 CDS Clim_2314 NC_010803.1 2544912 2545373 D PFAM: UspA domain protein; KEGG: pvi:Cvib_0209 UspA domain protein; UspA domain-containing protein 2544912..2545373 Chlorobium limicola DSM 245 6355659 YP_001944317.1 CDS Clim_2315 NC_010803.1 2545348 2546166 R PFAM: transport system permease protein; ABC transporter; KEGG: cph:Cpha266_2474 ABC transporter; ABC transporter complement(2545348..2546166) Chlorobium limicola DSM 245 6355660 YP_001944318.1 CDS Clim_2316 NC_010803.1 2546171 2546926 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cph:Cpha266_2475 ABC transporter; ABC transporter complement(2546171..2546926) Chlorobium limicola DSM 245 6355661 YP_001944319.1 CDS Clim_2317 NC_010803.1 2546923 2547825 R PFAM: periplasmic solute binding protein; KEGG: cte:CT2106 adhesion protein; periplasmic solute binding protein complement(2546923..2547825) Chlorobium limicola DSM 245 6355662 YP_001944320.1 CDS Clim_2318 NC_010803.1 2547822 2548280 R PFAM: ferric-uptake regulator; KEGG: cph:Cpha266_2477 ferric uptake regulator, Fur family; Fur family ferric uptake regulator complement(2547822..2548280) Chlorobium limicola DSM 245 6355663 YP_001944321.1 CDS Clim_2319 NC_010803.1 2548353 2550041 R TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cph:Cpha266_2478 2-isopropylmalate synthase; 2-isopropylmalate synthase complement(2548353..2550041) Chlorobium limicola DSM 245 6355664 YP_001944322.1 CDS Clim_2320 NC_010803.1 2550392 2550889 R PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: pvi:Cvib_0204 protein of unknown function DUF306, MetA and HslJ; hypothetical protein complement(2550392..2550889) Chlorobium limicola DSM 245 6355665 YP_001944323.1 CDS Clim_2321 NC_010803.1 2550977 2551714 R PFAM: ABC transporter; KEGG: mba:Mbar_A2485 hypothetical protein; ABC transporter complement(2550977..2551714) Chlorobium limicola DSM 245 6355666 YP_001944324.1 CDS Clim_2322 NC_010803.1 2551711 2552697 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: mhu:Mhun_0242 daunorubicin resistance ABC transporter ATP-binding subunit; ABC transporter complement(2551711..2552697) Chlorobium limicola DSM 245 6355667 YP_001944325.1 CDS Clim_2323 NC_010803.1 2552739 2552903 R KEGG: pca:Pcar_2840 hypothetical protein; hypothetical protein complement(2552739..2552903) Chlorobium limicola DSM 245 6355668 YP_001944326.1 CDS Clim_2324 NC_010803.1 2552968 2553252 R PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: pca:Pcar_2839 predicted metal-regulated homodimeric transcriptional regulator; ArsR family transcriptional regulator complement(2552968..2553252) Chlorobium limicola DSM 245 6355669 YP_001944327.1 CDS Clim_2325 NC_010803.1 2553349 2554302 R KEGG: cph:Cpha266_0169 hypothetical protein; hypothetical protein complement(2553349..2554302) Chlorobium limicola DSM 245 6355670 YP_001944328.1 CDS Clim_2326 NC_010803.1 2554347 2555258 R TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: cch:Cag_0146 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase complement(2554347..2555258) Chlorobium limicola DSM 245 6355671 YP_001944329.1 CDS Clim_2327 NC_010803.1 2555434 2555844 D PFAM: cytochrome c class I; KEGG: cph:Cpha266_0171 C-type cytochrome; cytochrome c class I 2555434..2555844 Chlorobium limicola DSM 245 6355672 YP_001944330.1 CDS Clim_2328 NC_010803.1 2556081 2557970 R TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: cph:Cpha266_0172 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL complement(2556081..2557970) Chlorobium limicola DSM 245 6355674 YP_001944331.1 CDS Clim_2329 NC_010803.1 2558042 2559331 R TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cph:Cpha266_2541 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA complement(2558042..2559331) Chlorobium limicola DSM 245 6355675 YP_001944332.1 CDS thrA NC_010803.1 2559342 2561810 R multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I complement(2559342..2561810) Chlorobium limicola DSM 245 6355676 YP_001944333.1 CDS Clim_2331 NC_010803.1 2561989 2562864 R produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(2561989..2562864) Chlorobium limicola DSM 245 6355677 YP_001944334.1 CDS Clim_2332 NC_010803.1 2562917 2564497 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(2562917..2564497) Chlorobium limicola DSM 245 6355678 YP_001944335.1 CDS Clim_2333 NC_010803.1 2564743 2565705 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2564743..2565705 Chlorobium limicola DSM 245 6355679 YP_001944336.1 CDS Clim_2334 NC_010803.1 2565730 2567043 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2565730..2567043 Chlorobium limicola DSM 245 6355680 YP_001944337.1 CDS Clim_2335 NC_010803.1 2567062 2567778 D KEGG: cph:Cpha266_2547 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 2567062..2567778 Chlorobium limicola DSM 245 6355681 YP_001944338.1 CDS ribH NC_010803.1 2567769 2568236 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(2567769..2568236) Chlorobium limicola DSM 245 6355682 YP_001944339.1 CDS Clim_2337 NC_010803.1 2568267 2568911 R TIGRFAM: phosphoheptose isomerase; KEGG: cph:Cpha266_2549 phosphoheptose isomerase; phosphoheptose isomerase complement(2568267..2568911) Chlorobium limicola DSM 245 6355683 YP_001944340.1 CDS Clim_2338 NC_010803.1 2569101 2569934 D PFAM: UspA domain protein; KEGG: cph:Cpha266_2551 UspA domain protein; UspA domain-containing protein 2569101..2569934 Chlorobium limicola DSM 245 6355684 YP_001944341.1 CDS Clim_2339 NC_010803.1 2569954 2570784 R PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: pvi:Cvib_1634 ion transport protein; Ion transport protein complement(2569954..2570784) Chlorobium limicola DSM 245 6355685 YP_001944342.1 CDS Clim_2340 NC_010803.1 2570811 2570990 D hypothetical protein 2570811..2570990 Chlorobium limicola DSM 245 6355686 YP_001944343.1 CDS hemE NC_010803.1 2570962 2572017 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(2570962..2572017) Chlorobium limicola DSM 245 6355687 YP_001944344.1 CDS Clim_2342 NC_010803.1 2572192 2573040 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: cph:Cpha266_0175 succinate dehydrogenase subunit C; CoB--CoM heterodisulfide reductase complement(2572192..2573040) Chlorobium limicola DSM 245 6355688 YP_001944345.1 CDS Clim_2343 NC_010803.1 2573058 2574092 R TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: cph:Cpha266_0176 succinate dehydrogenase subunit B; succinate dehydrogenase and fumarate reductase iron-sulfur protein complement(2573058..2574092) Chlorobium limicola DSM 245 6355689 YP_001944346.1 CDS Clim_2344 NC_010803.1 2574104 2575807 R KEGG: cph:Cpha266_0177 succinate dehydrogenase subunit A; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; succinate dehydrogenase or fumarate reductase, flavoprotein subunit complement(2574104..2575807) Chlorobium limicola DSM 245 6355690 YP_001944347.1 CDS Clim_2345 NC_010803.1 2575930 2576376 R PFAM: CBS domain containing protein; KEGG: cch:Cag_0126 CBS; signal-transduction protein with CBS domains complement(2575930..2576376) Chlorobium limicola DSM 245 6355691 YP_001944348.1 CDS Clim_2346 NC_010803.1 2576558 2577238 R PFAM: beta-lactamase domain protein; KEGG: cph:Cpha266_0179 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(2576558..2577238) Chlorobium limicola DSM 245 6355692 YP_001944349.1 CDS Clim_2347 NC_010803.1 2577219 2577527 R KEGG: cph:Cpha266_0180 hypothetical protein; hypothetical protein complement(2577219..2577527) Chlorobium limicola DSM 245 6355693 YP_001944350.1 CDS Clim_2348 NC_010803.1 2577524 2580754 R PFAM: acriflavin resistance protein; KEGG: cph:Cpha266_0181 acriflavin resistance protein; acriflavin resistance protein complement(2577524..2580754) Chlorobium limicola DSM 245 6355694 YP_001944351.1 CDS Clim_2349 NC_010803.1 2580747 2581178 R KEGG: plt:Plut_2000 hypothetical protein; hypothetical protein complement(2580747..2581178) Chlorobium limicola DSM 245 6355695 YP_001944352.1 CDS Clim_2350 NC_010803.1 2581217 2582542 R PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0183 outer membrane efflux protein; outer membrane efflux protein complement(2581217..2582542) Chlorobium limicola DSM 245 6355696 YP_001944353.1 CDS Clim_2351 NC_010803.1 2582549 2582779 R PFAM: protein of unknown function DUF156; KEGG: cph:Cpha266_0184 hypothetical protein; hypothetical protein complement(2582549..2582779) Chlorobium limicola DSM 245 6355697 YP_001944354.1 CDS Clim_2352 NC_010803.1 2582903 2583514 R KEGG: plt:Plut_2003 hypothetical protein; hypothetical protein complement(2582903..2583514) Chlorobium limicola DSM 245 6355698 YP_001944355.1 CDS Clim_2353 NC_010803.1 2583647 2583850 D KEGG: plt:Plut_2004 hypothetical protein; hypothetical protein 2583647..2583850 Chlorobium limicola DSM 245 6355699 YP_001944356.1 CDS Clim_2354 NC_010803.1 2584065 2584292 D KEGG: plt:Plut_2005 chlorosome envelope protein B; chlorosome envelope protein B 2584065..2584292 Chlorobium limicola DSM 245 6355700 YP_001944357.1 CDS Clim_2355 NC_010803.1 2584335 2585411 D PFAM: aminoglycoside phosphotransferase; KEGG: cph:Cpha266_0203 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2584335..2585411 Chlorobium limicola DSM 245 6355701 YP_001944358.1 CDS Clim_2356 NC_010803.1 2585408 2586340 D PFAM: Nucleotidyl transferase; KEGG: cph:Cpha266_0204 nucleotidyl transferase; nucleotidyl transferase 2585408..2586340 Chlorobium limicola DSM 245 6355702 YP_001944359.1 CDS Clim_2357 NC_010803.1 2586367 2587530 D PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_0205 uncharacterised conserved protein UCP016719; hypothetical protein 2586367..2587530 Chlorobium limicola DSM 245 6355703 YP_001944360.1 CDS Clim_2358 NC_010803.1 2587552 2588970 D PFAM: Na+/solute symporter; KEGG: cph:Cpha266_0206 Na+/solute symporter; Na+/solute symporter 2587552..2588970 Chlorobium limicola DSM 245 6355704 YP_001944361.1 CDS Clim_2359 NC_010803.1 2589072 2589329 D PFAM: bacteriochlorophyll C binding protein; KEGG: plt:Plut_2013 chlorosome envelope protein E; bacteriochlorophyll C binding protein 2589072..2589329 Chlorobium limicola DSM 245 6355705 YP_001944362.1 CDS Clim_2360 NC_010803.1 2589409 2590107 R PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: cph:Cpha266_0208 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(2589409..2590107) Chlorobium limicola DSM 245 6355706 YP_001944363.1 CDS Clim_2361 NC_010803.1 2590311 2591663 D PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_0209 pentapeptide repeat protein; pentapeptide repeat-containing protein 2590311..2591663 Chlorobium limicola DSM 245 6355707 YP_001944364.1 CDS Clim_2362 NC_010803.1 2591756 2591989 D KEGG: pvi:Cvib_1657 hypothetical protein; hypothetical protein 2591756..2591989 Chlorobium limicola DSM 245 6355708 YP_001944365.1 CDS Clim_2363 NC_010803.1 2592013 2592306 R KEGG: cph:Cpha266_0211 hypothetical protein; hypothetical protein complement(2592013..2592306) Chlorobium limicola DSM 245 6355709 YP_001944366.1 CDS Clim_2364 NC_010803.1 2592454 2593641 R KEGG: cph:Cpha266_0213 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA complement(2592454..2593641) Chlorobium limicola DSM 245 6355710 YP_001944367.1 CDS Clim_2365 NC_010803.1 2593715 2594641 R PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0214 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(2593715..2594641) Chlorobium limicola DSM 245 6355711 YP_001944368.1 CDS Clim_2366 NC_010803.1 2594918 2595409 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: cph:Cpha266_0215 rare lipoprotein A; rare lipoprotein A 2594918..2595409 Chlorobium limicola DSM 245 6355836 YP_001944369.1 CDS Clim_2367 NC_010803.1 2595506 2595892 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: plt:Plut_2020 rare lipoprotein A; rare lipoprotein A 2595506..2595892 Chlorobium limicola DSM 245 6355838 YP_001944370.1 CDS Clim_2368 NC_010803.1 2595896 2596609 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT2121 methyltransferase; type 12 methyltransferase complement(2595896..2596609) Chlorobium limicola DSM 245 6355839 YP_001944371.1 CDS Clim_2369 NC_010803.1 2596631 2597221 R PFAM: conserved hypothetical protein; KEGG: bpt:Bpet4723 lysine decarboxylase; hypothetical protein complement(2596631..2597221) Chlorobium limicola DSM 245 6355840 YP_001944372.1 CDS Clim_2370 NC_010803.1 2597302 2598063 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: fjo:Fjoh_2091 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2597302..2598063) Chlorobium limicola DSM 245 6355841 YP_001944373.1 CDS Clim_2371 NC_010803.1 2598366 2598962 R PFAM: YceI family protein; KEGG: gme:Gmet_3449 YceI; hypothetical protein complement(2598366..2598962) Chlorobium limicola DSM 245 6355842 YP_001944374.1 CDS Clim_2372 NC_010803.1 2599118 2599684 R KEGG: sfu:Sfum_2080 hypothetical protein; hypothetical protein complement(2599118..2599684) Chlorobium limicola DSM 245 6355843 YP_001944375.1 CDS trmE NC_010803.1 2599794 2601215 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(2599794..2601215) Chlorobium limicola DSM 245 6355844 YP_001944376.1 CDS Clim_2374 NC_010803.1 2601250 2602020 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_0152 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2601250..2602020) Chlorobium limicola DSM 245 6355845 YP_001944377.1 CDS mazG NC_010803.1 2602044 2602856 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 2602044..2602856 Chlorobium limicola DSM 245 6355846 YP_001944378.1 CDS Clim_2376 NC_010803.1 2602876 2603097 D hypothetical protein 2602876..2603097 Chlorobium limicola DSM 245 6355847 YP_001944379.1 CDS Clim_2377 NC_010803.1 2603118 2603783 R PFAM: phospholipase/Carboxylesterase; KEGG: cph:Cpha266_2535 phospholipase/carboxylesterase; phospholipase/carboxylesterase complement(2603118..2603783) Chlorobium limicola DSM 245 6355848 YP_001944380.1 CDS Clim_2378 NC_010803.1 2603839 2607138 R KEGG: cph:Cpha266_2536 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase complement(2603839..2607138) Chlorobium limicola DSM 245 6355849 YP_001944381.1 CDS Clim_2379 NC_010803.1 2607182 2609197 R PFAM: alpha amylase catalytic region; KEGG: cph:Cpha266_2537 alpha amylase, catalytic region; alpha amylase complement(2607182..2609197) Chlorobium limicola DSM 245 6355850 YP_001944382.1 CDS Clim_2380 NC_010803.1 2609828 2610577 D TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: cph:Cpha266_2538 bacterial peptide chain release factor 2 (bRF-2); peptide chain release factor 2 2609828..2610577 Chlorobium limicola DSM 245 6355851 YP_001944383.1 CDS Clim_2381 NC_010803.1 2610591 2611421 D PFAM: metallophosphoesterase; KEGG: cph:Cpha266_2539 hypothetical protein; metallophosphoesterase 2610591..2611421 Chlorobium limicola DSM 245 6355852 YP_001944384.1 CDS Clim_2382 NC_010803.1 2611418 2612278 D PFAM: Peptidase M23; KEGG: plt:Plut_2033 membrane proteins related to metalloendopeptidase-like; peptidase M23 2611418..2612278 Chlorobium limicola DSM 245 6355853 YP_001944385.1 CDS Clim_2383 NC_010803.1 2612664 2612885 D hypothetical protein 2612664..2612885 Chlorobium limicola DSM 245 6355854 YP_001944386.1 CDS Clim_2384 NC_010803.1 2612986 2614080 D PFAM: Radical SAM domain protein; KEGG: cph:Cpha266_1175 radical SAM domain protein; radical SAM protein 2612986..2614080 Chlorobium limicola DSM 245 6355855 YP_001944387.1 CDS Clim_2385 NC_010803.1 2614164 2615414 D PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_2107 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2614164..2615414 Chlorobium limicola DSM 245 6355856 YP_001944388.1 CDS Clim_2386 NC_010803.1 2615511 2616032 R KEGG: lch:Lcho_4189 hypothetical protein; hypothetical protein complement(2615511..2616032) Chlorobium limicola DSM 245 6355857 YP_001944389.1 CDS Clim_2387 NC_010803.1 2616181 2616336 D hypothetical protein 2616181..2616336 Chlorobium limicola DSM 245 6355858 YP_001944390.1 CDS Clim_2388 NC_010803.1 2616396 2617148 D KEGG: cph:Cpha266_1987 hypothetical protein; hypothetical protein 2616396..2617148 Chlorobium limicola DSM 245 6355859 YP_001944391.1 CDS Clim_2390 NC_010803.1 2617621 2618730 R PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: cph:Cpha266_2553 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(2617621..2618730) Chlorobium limicola DSM 245 6355861 YP_001944392.1 CDS Clim_2391 NC_010803.1 2618866 2619789 D PFAM: OstA family protein; KEGG: cph:Cpha266_2554 hypothetical protein; OstA family protein 2618866..2619789 Chlorobium limicola DSM 245 6355862 YP_001944393.1 CDS Clim_2392 NC_010803.1 2619875 2620132 R TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: cph:Cpha266_2555 regulatory protein, FmdB family; FmdB family regulatory protein complement(2619875..2620132) Chlorobium limicola DSM 245 6355863 YP_001944394.1 CDS Clim_2393 NC_010803.1 2620349 2621134 D TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: cph:Cpha266_2556 DNA repair protein RecO; DNA repair protein RecO 2620349..2621134 Chlorobium limicola DSM 245 6355864 YP_001944395.1 CDS Clim_2394 NC_010803.1 2621291 2622586 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 2621291..2622586 Chlorobium limicola DSM 245 6355865 YP_001944396.1 CDS Clim_2395 NC_010803.1 2622720 2627018 R KEGG: bch:Bcen2424_3497 hypothetical protein; hypothetical protein complement(2622720..2627018) Chlorobium limicola DSM 245 6355866 YP_001944397.1 CDS Clim_2397 NC_010803.1 2629057 2629392 R PFAM: protein of unknown function DUF190; KEGG: cte:CT2101 hypothetical protein; hypothetical protein complement(2629057..2629392) Chlorobium limicola DSM 245 6355868 YP_001944398.1 CDS Clim_2398 NC_010803.1 2629389 2629781 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(2629389..2629781) Chlorobium limicola DSM 245 6355869 YP_001944399.1 CDS Clim_2399 NC_010803.1 2629771 2630001 R KEGG: cph:Cpha266_2560 hypothetical protein; hypothetical protein complement(2629771..2630001) Chlorobium limicola DSM 245 6355870 YP_001944400.1 CDS Clim_2400 NC_010803.1 2630659 2632875 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cph:Cpha266_2562 formate dehydrogenase; molybdopterin oxidoreductase 2630659..2632875 Chlorobium limicola DSM 245 6355871 YP_001944401.1 CDS Clim_2401 NC_010803.1 2632879 2633445 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_2563 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2632879..2633445 Chlorobium limicola DSM 245 6355872 YP_001944402.1 CDS Clim_2402 NC_010803.1 2633448 2634443 D PFAM: Polysulphide reductase NrfD; KEGG: cph:Cpha266_2564 polysulphide reductase, NrfD; polysulfide reductase NrfD 2633448..2634443 Chlorobium limicola DSM 245 6355873 YP_001944403.1 CDS Clim_2403 NC_010803.1 2634544 2634939 R KEGG: cph:Cpha266_1687 hypothetical protein; hypothetical protein complement(2634544..2634939) Chlorobium limicola DSM 245 6355874 YP_001944404.1 CDS Clim_2404 NC_010803.1 2635129 2635245 R hypothetical protein complement(2635129..2635245) Chlorobium limicola DSM 245 6355875 YP_001944405.1 CDS Clim_2405 NC_010803.1 2635284 2636717 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cph:Cpha266_2569 sulfide-quinone reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2635284..2636717) Chlorobium limicola DSM 245 6355876 YP_001944406.1 CDS Clim_2406 NC_010803.1 2636942 2637370 D PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: cph:Cpha266_2570 Holliday junction resolvase YqgF; Holliday junction resolvase YqgF 2636942..2637370 Chlorobium limicola DSM 245 6355877 YP_001944407.1 CDS pyrE NC_010803.1 2637496 2638062 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 2637496..2638062 Chlorobium limicola DSM 245 6355878 YP_001944408.1 CDS Clim_2408 NC_010803.1 2638067 2638936 D PFAM: Prephenate dehydrogenase; KEGG: cph:Cpha266_2572 prephenate dehydrogenase; prephenate dehydrogenase 2638067..2638936 Chlorobium limicola DSM 245 6355879 YP_001944409.1 CDS Clim_2409 NC_010803.1 2638933 2639796 D PFAM: ATP-NAD/AcoX kinase; KEGG: cph:Cpha266_2573 NAD(+) kinase; ATP-NAD/AcoX kinase 2638933..2639796 Chlorobium limicola DSM 245 6355880 YP_001944410.1 CDS Clim_2410 NC_010803.1 2639793 2641301 D KEGG: cph:Cpha266_2574 hypothetical protein; hypothetical protein 2639793..2641301 Chlorobium limicola DSM 245 6355881 YP_001944411.1 CDS Clim_2411 NC_010803.1 2641330 2641875 R TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: cph:Cpha266_2575 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(2641330..2641875) Chlorobium limicola DSM 245 6355882 YP_001944412.1 CDS Clim_2412 NC_010803.1 2641915 2642745 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(2641915..2642745) Chlorobium limicola DSM 245 6355883 YP_001944413.1 CDS Clim_2413 NC_010803.1 2642898 2644226 D PFAM: ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_2577 ATPase AAA-2 domain protein; ATPase AAA 2642898..2644226 Chlorobium limicola DSM 245 6355884 YP_001944414.1 CDS Clim_2414 NC_010803.1 2644223 2645344 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: cph:Cpha266_2578 glycoside hydrolase, family 3 domain protein; beta-N-acetylhexosaminidase 2644223..2645344 Chlorobium limicola DSM 245 6355885 YP_001944415.1 CDS Clim_2415 NC_010803.1 2645344 2645838 D PFAM: Phosphoglycerate mutase; KEGG: cph:Cpha266_2579 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase SixA 2645344..2645838 Chlorobium limicola DSM 245 6355886 YP_001944416.1 CDS gpsA NC_010803.1 2645852 2646853 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(2645852..2646853) Chlorobium limicola DSM 245 6355887 YP_001944417.1 CDS Clim_2417 NC_010803.1 2646871 2647578 R PFAM: protein of unknown function DUF205; KEGG: cph:Cpha266_2581 acyl-phosphate glycerol-3-phosphate acyltransferase; membrane protein complement(2646871..2647578) Chlorobium limicola DSM 245 6355888 YP_001944418.1 CDS Clim_2418 NC_010803.1 2647623 2648612 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(2647623..2648612) Chlorobium limicola DSM 245 6355889 YP_001944419.1 CDS Clim_2419 NC_010803.1 2648656 2650071 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III complement(2648656..2650071) Chlorobium limicola DSM 245 6355890 YP_001944420.1 CDS Clim_2420 NC_010803.1 2650192 2650815 D PFAM: NLP/P60 protein; KEGG: cph:Cpha266_2584 NLP/P60 protein; NLP/P60 protein 2650192..2650815 Chlorobium limicola DSM 245 6355891 YP_001944421.1 CDS prmA NC_010803.1 2650921 2651802 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 2650921..2651802 Chlorobium limicola DSM 245 6355892 YP_001944422.1 CDS Clim_2422 NC_010803.1 2651815 2652750 D PFAM: Ppx/GppA phosphatase; KEGG: cph:Cpha266_2586 Ppx/GppA phosphatase; Ppx/GppA phosphatase 2651815..2652750 Chlorobium limicola DSM 245 6355893 YP_001944423.1 CDS Clim_2423 NC_010803.1 2652683 2653942 R KEGG: cph:Cpha266_2587 hypothetical protein; hypothetical protein complement(2652683..2653942) Chlorobium limicola DSM 245 6355894 YP_001944424.1 CDS Clim_2424 NC_010803.1 2653939 2655642 R PFAM: AMP-dependent synthetase and ligase; KEGG: cph:Cpha266_2588 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(2653939..2655642) Chlorobium limicola DSM 245 6355895 YP_001944425.1 CDS Clim_2425 NC_010803.1 2655710 2656999 R TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: cph:Cpha266_0117 aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(2655710..2656999) Chlorobium limicola DSM 245 6355896 YP_001944426.1 CDS bioD NC_010803.1 2657018 2657707 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(2657018..2657707) Chlorobium limicola DSM 245 6355897 YP_001944427.1 CDS Clim_2427 NC_010803.1 2657704 2658486 R TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0115 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC complement(2657704..2658486) Chlorobium limicola DSM 245 6355898 YP_001944428.1 CDS Clim_2428 NC_010803.1 2658471 2659154 R PFAM: protein of unknown function DUF452; KEGG: cph:Cpha266_0114 protein of unknown function DUF452; hypothetical protein complement(2658471..2659154) Chlorobium limicola DSM 245 6355899 YP_001944429.1 CDS Clim_2429 NC_010803.1 2659151 2660317 R PFAM: aminotransferase class I and II; KEGG: cph:Cpha266_0113 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase complement(2659151..2660317) Chlorobium limicola DSM 245 6355900 YP_001944430.1 CDS Clim_2430 NC_010803.1 2660323 2661333 R KEGG: cte:CT0052 biotin synthetase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(2660323..2661333) Chlorobium limicola DSM 245 6355901 YP_001944431.1 CDS Clim_2431 NC_010803.1 2661346 2662338 R KEGG: cph:Cpha266_0111 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; biotin--acetyl-CoA-carboxylase ligase complement(2661346..2662338) Chlorobium limicola DSM 245 6355902 YP_001944432.1 CDS Clim_2432 NC_010803.1 2662457 2664280 R PFAM: cell wall hydrolase/autolysin; KEGG: cph:Cpha266_0110 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(2662457..2664280) Chlorobium limicola DSM 245 6355903 YP_001944433.1 CDS Clim_2433 NC_010803.1 2664406 2666802 D KEGG: cph:Cpha266_0109 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase I 2664406..2666802 Chlorobium limicola DSM 245 6355904 YP_001944434.1 CDS Clim_2434 NC_010803.1 2666792 2668927 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: cph:Cpha266_0108 ferrous iron transport protein B; ferrous iron transport protein B complement(2666792..2668927) Chlorobium limicola DSM 245 6355905 YP_001944435.1 CDS Clim_2435 NC_010803.1 2668927 2669214 R PFAM: FeoA family protein; KEGG: cph:Cpha266_0107 FeoA family protein; FeoA family protein complement(2668927..2669214) Chlorobium limicola DSM 245 6355906 YP_001944436.1 CDS Clim_2436 NC_010803.1 2669332 2672067 R TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: cph:Cpha266_0106 aconitase; aconitate hydratase 1 complement(2669332..2672067) Chlorobium limicola DSM 245 6355907 YP_001944437.1 CDS Clim_2437 NC_010803.1 2672109 2672495 R PFAM: histidine triad (HIT) protein; KEGG: cph:Cpha266_0105 histidine triad (HIT) protein; histidine triad (HIT) protein complement(2672109..2672495) Chlorobium limicola DSM 245 6355908 YP_001944438.1 CDS Clim_2438 NC_010803.1 2672550 2673068 R KEGG: cph:Cpha266_0104 hypothetical protein; hypothetical protein complement(2672550..2673068) Chlorobium limicola DSM 245 6355909 YP_001944439.1 CDS Clim_2439 NC_010803.1 2673177 2674508 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cph:Cpha266_0098 protein of unknown function DUF21; hypothetical protein complement(2673177..2674508) Chlorobium limicola DSM 245 6355910 YP_001944440.1 CDS Clim_2440 NC_010803.1 2674899 2675567 D KEGG: plt:Plut_2079 Fibrobacter succinogenes major paralogous domain; hypothetical protein 2674899..2675567 Chlorobium limicola DSM 245 6355911 YP_001944441.1 CDS Clim_2441 NC_010803.1 2675683 2676456 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0100 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; succinate dehydrogenase/fumarate reductase iron-sulfur subunit complement(2675683..2676456) Chlorobium limicola DSM 245 6355912 YP_001944442.1 CDS sdhA NC_010803.1 2676468 2678408 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(2676468..2678408) Chlorobium limicola DSM 245 6355913 YP_001944443.1 CDS Clim_2443 NC_010803.1 2678437 2679132 R TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: cph:Cpha266_0102 succinate dehydrogenase subunit C; succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family complement(2678437..2679132) Chlorobium limicola DSM 245 6355914 YP_001944444.1 CDS Clim_2444 NC_010803.1 2679198 2679842 R PFAM: cyclase family protein; KEGG: cph:Cpha266_0103 cyclase family protein; cyclase family protein complement(2679198..2679842) Chlorobium limicola DSM 245 6355915 YP_001944445.1 CDS Clim_2445 NC_010803.1 2679875 2681002 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(2679875..2681002) Chlorobium limicola DSM 245 6355916 YP_001944446.1 CDS Clim_2446 NC_010803.1 2681007 2681516 D KEGG: nfa:nfa2750 hypothetical protein; hypothetical protein 2681007..2681516 Chlorobium limicola DSM 245 6355917 YP_001944447.1 CDS Clim_2447 NC_010803.1 2681527 2682987 R PFAM: Alkaline phosphatase; KEGG: cph:Cpha266_2693 alkaline phosphatase; alkaline phosphatase complement(2681527..2682987) Chlorobium limicola DSM 245 6355918 YP_001944448.1 CDS Clim_2448 NC_010803.1 2683142 2683756 R KEGG: cph:Cpha266_2695 hypothetical protein; hypothetical protein complement(2683142..2683756) Chlorobium limicola DSM 245 6354095 YP_001944449.1 CDS Clim_2449 NC_010803.1 2683807 2684529 R PFAM: alpha/beta hydrolase fold; KEGG: pvi:Cvib_1726 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2683807..2684529) Chlorobium limicola DSM 245 6354719 YP_001944450.1 CDS Clim_2450 NC_010803.1 2684711 2685226 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: cph:Cpha266_2697 rare lipoprotein A; rare lipoprotein A 2684711..2685226 Chlorobium limicola DSM 245 6354720 YP_001944451.1 CDS Clim_2452 NC_010803.1 2685811 2686695 R KEGG: cph:Cpha266_1071 hypothetical protein; hypothetical protein complement(2685811..2686695) Chlorobium limicola DSM 245 6354722 YP_001944452.1 CDS Clim_2453 NC_010803.1 2686706 2687626 R PFAM: protein of unknown function DUF89; KEGG: cph:Cpha266_1577 protein of unknown function DUF89; hypothetical protein complement(2686706..2687626) Chlorobium limicola DSM 245 6354723 YP_001944453.1 CDS Clim_2454 NC_010803.1 2687903 2688868 R PFAM: protein of unknown function DUF1568; KEGG: cph:Cpha266_1578 protein of unknown function DUF1568; hypothetical protein complement(2687903..2688868) Chlorobium limicola DSM 245 6354724 YP_001944454.1 CDS Clim_2455 NC_010803.1 2688980 2690365 R KEGG: sgr:SGR_4270 hypothetical protein; hypothetical protein complement(2688980..2690365) Chlorobium limicola DSM 245 6354725 YP_001944455.1 CDS Clim_2456 NC_010803.1 2690708 2691217 R KEGG: swi:Swit_0248 hypothetical protein; hypothetical protein complement(2690708..2691217) Chlorobium limicola DSM 245 6354726 YP_001944456.1 CDS Clim_2457 NC_010803.1 2691817 2692176 R KEGG: cph:Cpha266_1691 hypothetical protein; hypothetical protein complement(2691817..2692176) Chlorobium limicola DSM 245 6354727 YP_001944457.1 CDS Clim_2458 NC_010803.1 2692201 2692356 D hypothetical protein 2692201..2692356 Chlorobium limicola DSM 245 6354728 YP_001944458.1 CDS Clim_2459 NC_010803.1 2692675 2693433 D KEGG: rpe:RPE_2427 hypothetical protein; hypothetical protein 2692675..2693433 Chlorobium limicola DSM 245 6354729 YP_001944459.1 CDS Clim_2460 NC_010803.1 2693441 2694043 D KEGG: swi:Swit_1093 hypothetical protein; hypothetical protein 2693441..2694043 Chlorobium limicola DSM 245 6354730 YP_001944460.1 CDS Clim_2461 NC_010803.1 2694087 2698298 R KEGG: cph:Cpha266_1705 protein of unknown function DUF559; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; protein of unknown function DUF559; SMART: DEAD-like helicases; HsdR family type I site-specific deoxyribonuclease complement(2694087..2698298) Chlorobium limicola DSM 245 6354731 YP_001944461.1 CDS Clim_2462 NC_010803.1 2698302 2699744 R PFAM: AAA-4 family protein; KEGG: cph:Cpha266_1706 transcriptional regulator; transcriptional regulator complement(2698302..2699744) Chlorobium limicola DSM 245 6354732 YP_001944462.1 CDS Clim_2463 NC_010803.1 2699891 2700721 R KEGG: nmu:Nmul_A0110 hypothetical protein; hypothetical protein complement(2699891..2700721) Chlorobium limicola DSM 245 6354733 YP_001944463.1 CDS Clim_2464 NC_010803.1 2700847 2702214 D PFAM: transposase IS4 family protein; KEGG: cph:Cpha266_2634 transposase, IS4 family protein; transposase IS4 family protein 2700847..2702214 Chlorobium limicola DSM 245 6354734 YP_001944464.1 CDS Clim_2465 NC_010803.1 2702329 2704131 R PFAM: protein of unknown function DUF87; KEGG: pst:PSPTO_4332 hypothetical protein; hypothetical protein complement(2702329..2704131) Chlorobium limicola DSM 245 6354735 YP_001944465.1 CDS Clim_2466 NC_010803.1 2704128 2705354 R KEGG: pst:PSPTO_4326 hypothetical protein; hypothetical protein complement(2704128..2705354) Chlorobium limicola DSM 245 6354736 YP_001944466.1 CDS Clim_2467 NC_010803.1 2705381 2706697 R PFAM: restriction modification system DNA specificity domain; KEGG: tcx:Tcr_0333 restriction modification system DNA specificity domain; restriction modification system DNA specificity domain complement(2705381..2706697) Chlorobium limicola DSM 245 6354737 YP_001944467.1 CDS dinD NC_010803.1 2706702 2707556 R KEGG: cph:Cpha266_1711 DNA-damage-inducible protein D; DNA-damage-inducible protein D complement(2706702..2707556) Chlorobium limicola DSM 245 6354738 YP_001944468.1 CDS Clim_2469 NC_010803.1 2707553 2709871 R PFAM: N-6 DNA methylase; KEGG: cph:Cpha266_1712 N-6 DNA methylase; N-6 DNA methylase complement(2707553..2709871) Chlorobium limicola DSM 245 6354739 YP_001944469.1 CDS Clim_2470 NC_010803.1 2710030 2710137 D hypothetical protein 2710030..2710137 Chlorobium limicola DSM 245 6354740 YP_001944470.1 CDS Clim_2471 NC_010803.1 2710159 2710947 R PFAM: Domain of unknown function DUF1828; KEGG: cph:Cpha266_1713 conserved hypothetical cytosolic protein; hypothetical protein complement(2710159..2710947) Chlorobium limicola DSM 245 6354741 YP_001944471.1 CDS Clim_2472 NC_010803.1 2710944 2711441 R KEGG: cph:Cpha266_1714 hypothetical protein; hypothetical protein complement(2710944..2711441) Chlorobium limicola DSM 245 6354742 YP_001944472.1 CDS Clim_2474 NC_010803.1 2713000 2713314 D KEGG: cph:Cpha266_1716 hypothetical protein; hypothetical protein 2713000..2713314 Chlorobium limicola DSM 245 6354744 YP_001944473.1 CDS Clim_2475 NC_010803.1 2713366 2717130 R KEGG: mrd:Mrad2831_6506 hypothetical protein; hypothetical protein complement(2713366..2717130) Chlorobium limicola DSM 245 6354745 YP_001944474.1 CDS Clim_2476 NC_010803.1 2717355 2717861 R KEGG: cph:Cpha266_1504 PIN domain protein; PIN domain-containing protein complement(2717355..2717861) Chlorobium limicola DSM 245 6354746 YP_001944475.1 CDS Clim_2477 NC_010803.1 2717858 2719012 R PFAM: protein of unknown function DUF955; KEGG: cph:Cpha266_1505 protein of unknown function DUF955; hypothetical protein complement(2717858..2719012) Chlorobium limicola DSM 245 6354747 YP_001944476.1 CDS Clim_2478 NC_010803.1 2719343 2719528 D KEGG: cph:Cpha266_2705 hypothetical protein; hypothetical protein 2719343..2719528 Chlorobium limicola DSM 245 6354748 YP_001944477.1 CDS Clim_2479 NC_010803.1 2719701 2720369 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase complement(2719701..2720369) Chlorobium limicola DSM 245 6354749 YP_001944478.1 CDS Clim_2480 NC_010803.1 2720391 2721440 R transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine; deoxyhypusine synthase-like protein complement(2720391..2721440) Chlorobium limicola DSM 245 6354750 YP_001944479.1 CDS Clim_2481 NC_010803.1 2721645 2721791 D hypothetical protein 2721645..2721791 Chlorobium limicola DSM 245 6354751 YP_001944480.1 CDS Clim_2482 NC_010803.1 2721799 2722821 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 2721799..2722821 Chlorobium limicola DSM 245 6354752 YP_001944481.1 CDS Clim_2483 NC_010803.1 2722861 2723562 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pvi:Cvib_1731 beta-phosphoglucomutase family hydrolase; beta-phosphoglucomutase family hydrolase 2722861..2723562 Chlorobium limicola DSM 245 6354753 YP_001944482.1 CDS argS NC_010803.1 2723572 2725227 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2723572..2725227 Chlorobium limicola DSM 245 6354754 YP_001944483.1 CDS Clim_2485 NC_010803.1 2725236 2725832 R TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: cph:Cpha266_2703 nicotinate (nicotinamide) nucleotide adenylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(2725236..2725832) Chlorobium limicola DSM 245 6354755 YP_001944484.1 CDS Clim_2486 NC_010803.1 2725843 2726706 R KEGG: cph:Cpha266_2704 lipoprotein; lipoprotein complement(2725843..2726706) Chlorobium limicola DSM 245 6355103 YP_001944485.1 CDS Clim_2487 NC_010803.1 2727359 2727841 R KEGG: cph:Cpha266_0683 hypothetical protein; hypothetical protein complement(2727359..2727841) Chlorobium limicola DSM 245 6355104 YP_001944486.1 CDS Clim_2488 NC_010803.1 2728315 2728860 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(2728315..2728860) Chlorobium limicola DSM 245 6355106 YP_001944487.1 CDS Clim_2489 NC_010803.1 2728876 2729403 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(2728876..2729403) Chlorobium limicola DSM 245 6355108 YP_001944488.1 CDS Clim_2490 NC_010803.1 2729512 2729733 R TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: plt:Plut_2097 ATP synthase F0, C subunit; ATP synthase F0 subunit C complement(2729512..2729733) Chlorobium limicola DSM 245 6355109 YP_001944489.1 CDS Clim_2492 NC_010803.1 2730876 2731295 R KEGG: plt:Plut_2099 hypothetical protein; hypothetical protein complement(2730876..2731295) Chlorobium limicola DSM 245 6355111 YP_001944490.1 CDS Clim_2493 NC_010803.1 2731303 2731557 R KEGG: pvi:Cvib_1745 hypothetical protein; hypothetical protein complement(2731303..2731557) Chlorobium limicola DSM 245 6355112 YP_001944491.1 CDS Clim_2494 NC_010803.1 2731844 2732599 D PFAM: protein of unknown function DUF152; KEGG: cph:Cpha266_2712 protein of unknown function DUF152; hypothetical protein 2731844..2732599 Chlorobium limicola DSM 245 6355113 YP_001944492.1 CDS Clim_2495 NC_010803.1 2732586 2732798 R KEGG: cte:CT0027 hypothetical protein; hypothetical protein complement(2732586..2732798) Chlorobium limicola DSM 245 6355114 YP_001944493.1 CDS Clim_2496 NC_010803.1 2733001 2734020 D TIGRFAM: C-20 methyltransferase BchU; PFAM: O-methyltransferase family 2; KEGG: cph:Cpha266_2714 O-methyltransferase, family 2; C-20 methyltransferase BchU 2733001..2734020 Chlorobium limicola DSM 245 6355115 YP_001944494.1 CDS Clim_2497 NC_010803.1 2734149 2735432 R PFAM: acetyl-CoA hydrolase/transferase; KEGG: cte:CT0029 4-hydroxybutyrate coenzyme A transferase; acetyl-CoA hydrolase/transferase complement(2734149..2735432) Chlorobium limicola DSM 245 6355116 YP_001944495.1 CDS Clim_2498 NC_010803.1 2735462 2736754 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(2735462..2736754) Chlorobium limicola DSM 245 6355117 YP_001944496.1 CDS Clim_2499 NC_010803.1 2736799 2738121 R PFAM: cell division protein FtsA; KEGG: cph:Cpha266_2717 cell division protein FtsA; cell division protein FtsA complement(2736799..2738121) Chlorobium limicola DSM 245 6355118 YP_001944497.1 CDS Clim_2500 NC_010803.1 2738144 2739037 R PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: cph:Cpha266_2718 polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein complement(2738144..2739037) Chlorobium limicola DSM 245 6355119 YP_001944498.1 CDS murC NC_010803.1 2739202 2740602 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(2739202..2740602) Chlorobium limicola DSM 245 6355120 YP_001944499.1 CDS murG NC_010803.1 2740613 2741707 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(2740613..2741707) Chlorobium limicola DSM 245 6355121 YP_001944500.1 CDS Clim_2503 NC_010803.1 2741704 2742909 R PFAM: cell cycle protein; KEGG: cph:Cpha266_2722 cell cycle protein; cell cycle protein complement(2741704..2742909) Chlorobium limicola DSM 245 6355122 YP_001944501.1 CDS murD NC_010803.1 2742903 2744300 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(2742903..2744300) Chlorobium limicola DSM 245 6355123 YP_001944502.1 CDS mraY NC_010803.1 2744302 2745408 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(2744302..2745408) Chlorobium limicola DSM 245 6355124 YP_001944503.1 CDS Clim_2506 NC_010803.1 2745422 2746843 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cph:Cpha266_2725 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase complement(2745422..2746843) Chlorobium limicola DSM 245 6355125 YP_001944504.1 CDS Clim_2507 NC_010803.1 2746840 2748402 R TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cph:Cpha266_2726 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; UDP-N-acetylmuramyl tripeptide synthetase complement(2746840..2748402) Chlorobium limicola DSM 245 6355126 YP_001944505.1 CDS Clim_2508 NC_010803.1 2748399 2750420 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: cph:Cpha266_2727 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase complement(2748399..2750420) Chlorobium limicola DSM 245 6355127 YP_001944506.1 CDS Clim_2509 NC_010803.1 2750451 2750933 R KEGG: cph:Cpha266_2728 hypothetical protein; hypothetical protein complement(2750451..2750933) Chlorobium limicola DSM 245 6355128 YP_001944507.1 CDS Clim_2510 NC_010803.1 2750944 2751912 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: cph:Cpha266_2729 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW complement(2750944..2751912) Chlorobium limicola DSM 245 6355129 YP_001944508.1 CDS Clim_2511 NC_010803.1 2751917 2752402 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(2751917..2752402) Chlorobium limicola DSM 245 6355130 YP_001944509.1 CDS Clim_2512 NC_010803.1 2752627 2753121 D KEGG: cph:Cpha266_2731 hypothetical protein; hypothetical protein 2752627..2753121 Chlorobium limicola DSM 245 6355131 YP_001944510.1 CDS Clim_2513 NC_010803.1 2753199 2753522 D PFAM: Chorismate mutase; KEGG: cph:Cpha266_2732 chorismate mutase; Chorismate mutase 2753199..2753522 Chlorobium limicola DSM 245 6355132 YP_001944511.1 CDS Clim_2514 NC_010803.1 2753540 2754553 D PFAM: aminodeoxychorismate lyase; KEGG: cph:Cpha266_2733 aminodeoxychorismate lyase; aminodeoxychorismate lyase 2753540..2754553 Chlorobium limicola DSM 245 6355133 YP_001944512.1 CDS pgk NC_010803.1 2754648 2755841 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 2754648..2755841 Chlorobium limicola DSM 245 6355134 YP_001944513.1 CDS Clim_2516 NC_010803.1 2755889 2756719 D PFAM: Rhomboid family protein; KEGG: cph:Cpha266_2735 rhomboid family protein; rhomboid family protein 2755889..2756719 Chlorobium limicola DSM 245 6355135 YP_001944514.1 CDS Clim_2517 NC_010803.1 2756752 2757204 D PFAM: protein of unknown function DUF1232; KEGG: plt:Plut_2125 hypothetical protein; hypothetical protein 2756752..2757204 Chlorobium limicola DSM 245 6355136 YP_001944515.1 CDS Clim_2518 NC_010803.1 2757198 2758646 R TIGRFAM: RNA methyltransferase, TrmA family; PFAM: RNA methylase; deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: cte:CT0009 RNA methyltransferase, TrmA family; RNA methyltransferase, TrmA family complement(2757198..2758646) Chlorobium limicola DSM 245 6355137 YP_001944516.1 CDS Clim_2519 NC_010803.1 2758649 2759563 R PFAM: ROK family protein; KEGG: cph:Cpha266_2738 N-acetylglucosamine kinase; ROK family protein complement(2758649..2759563) Chlorobium limicola DSM 245 6355138 YP_001944517.1 CDS Clim_2520 NC_010803.1 2759566 2760159 R PFAM: phosphoesterase PA-phosphatase related; KEGG: pvi:Cvib_1770 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(2759566..2760159) Chlorobium limicola DSM 245 6355139 YP_001944518.1 CDS Clim_2521 NC_010803.1 2760166 2761917 R PFAM: 60 kDa inner membrane insertion protein; KEGG: cph:Cpha266_2740 protein translocase subunit YidC; 60 kDa inner membrane insertion protein complement(2760166..2761917) Chlorobium limicola DSM 245 6355140 YP_001944519.1 CDS Clim_2522 NC_010803.1 2761910 2762194 R PFAM: protein of unknown function DUF37; KEGG: cph:Cpha266_2741 protein of unknown function DUF37; hypothetical protein complement(2761910..2762194) Chlorobium limicola DSM 245 6355141 YP_001944520.1 CDS rnpA NC_010803.1 2762267 2762677 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(2762267..2762677) Chlorobium limicola DSM 245 6355142 YP_001944521.1 CDS Clim_2524 NC_010803.1 2762740 2762901 R PFAM: ribosomal protein L34; KEGG: plt:Plut_2132 50S ribosomal protein L34; 50S ribosomal protein L34 complement(2762740..2762901) Chlorobium limicola DSM 245 6355143 Clim_R0001 tRNA Clim_R0001 NC_010803.1 33627 33699 R tRNA-Thr complement(33627..33699) Chlorobium limicola DSM 245 6355552 Clim_R0002 tRNA Clim_R0002 NC_010803.1 92602 92675 D tRNA-Val 92602..92675 Chlorobium limicola DSM 245 6355609 Clim_R0004 tRNA Clim_R0004 NC_010803.1 114662 114738 D tRNA-Ile 114662..114738 Chlorobium limicola DSM 245 6356067 Clim_R0005 tRNA Clim_R0005 NC_010803.1 114773 114848 D tRNA-Ala 114773..114848 Chlorobium limicola DSM 245 6356068 Clim_R0009 tRNA Clim_R0009 NC_010803.1 160230 160306 D tRNA-Ile 160230..160306 Chlorobium limicola DSM 245 6356109 Clim_R0010 tRNA Clim_R0010 NC_010803.1 160341 160416 D tRNA-Ala 160341..160416 Chlorobium limicola DSM 245 6356110 Clim_R0013 tRNA Clim_R0013 NC_010803.1 190642 190716 D tRNA-Asn 190642..190716 Chlorobium limicola DSM 245 6355826 Clim_R0014 tRNA Clim_R0014 NC_010803.1 210522 210594 D tRNA-Thr 210522..210594 Chlorobium limicola DSM 245 6354642 Clim_R0015 tRNA Clim_R0015 NC_010803.1 210606 210688 D tRNA-Tyr 210606..210688 Chlorobium limicola DSM 245 6354643 Clim_R0016 tRNA Clim_R0016 NC_010803.1 210715 210787 D tRNA-Thr 210715..210787 Chlorobium limicola DSM 245 6354644 Clim_R0017 tRNA Clim_R0017 NC_010803.1 210812 210884 D tRNA-Trp 210812..210884 Chlorobium limicola DSM 245 6354645 Clim_R0018 tRNA Clim_R0018 NC_010803.1 275772 275845 D tRNA-Pro 275772..275845 Chlorobium limicola DSM 245 6354701 Clim_R0019 tRNA Clim_R0019 NC_010803.1 290415 290503 R tRNA-Leu complement(290415..290503) Chlorobium limicola DSM 245 6354715 Clim_R0020 tRNA Clim_R0020 NC_010803.1 359328 359400 D tRNA-Lys 359328..359400 Chlorobium limicola DSM 245 6353841 Clim_R0021 tRNA Clim_R0021 NC_010803.1 359430 359511 D tRNA-Leu 359430..359511 Chlorobium limicola DSM 245 6353842 Clim_R0022 tRNA Clim_R0022 NC_010803.1 398403 398478 D tRNA-Phe 398403..398478 Chlorobium limicola DSM 245 6354354 Clim_R0023 tRNA Clim_R0023 NC_010803.1 553092 553178 R tRNA-Ser complement(553092..553178) Chlorobium limicola DSM 245 6354483 Clim_R0024 tRNA Clim_R0024 NC_010803.1 555029 555104 R tRNA-Gly complement(555029..555104) Chlorobium limicola DSM 245 6354837 Clim_R0025 tRNA Clim_R0025 NC_010803.1 586800 586871 R tRNA-Gln complement(586800..586871) Chlorobium limicola DSM 245 6354867 Clim_R0026 tRNA Clim_R0026 NC_010803.1 587885 587961 R tRNA-Arg complement(587885..587961) Chlorobium limicola DSM 245 6354869 Clim_R0027 tRNA Clim_R0027 NC_010803.1 587969 588042 R tRNA-Glu complement(587969..588042) Chlorobium limicola DSM 245 6354870 Clim_R0028 tRNA Clim_R0028 NC_010803.1 588084 588157 R tRNA-Met complement(588084..588157) Chlorobium limicola DSM 245 6354871 Clim_R0029 tRNA Clim_R0029 NC_010803.1 922985 923071 R tRNA-Leu complement(922985..923071) Chlorobium limicola DSM 245 6353910 Clim_R0030 tRNA Clim_R0030 NC_010803.1 923087 923168 R tRNA-Leu complement(923087..923168) Chlorobium limicola DSM 245 6353911 Clim_R0031 tRNA Clim_R0031 NC_010803.1 961004 961076 D tRNA-Arg 961004..961076 Chlorobium limicola DSM 245 6354113 Clim_R0032 tRNA Clim_R0032 NC_010803.1 961095 961167 D tRNA-Pro 961095..961167 Chlorobium limicola DSM 245 6354114 Clim_R0033 tRNA Clim_R0033 NC_010803.1 1284652 1284727 D tRNA-Met 1284652..1284727 Chlorobium limicola DSM 245 6353707 Clim_R0034 tRNA Clim_R0034 NC_010803.1 1476657 1476733 D tRNA-Val 1476657..1476733 Chlorobium limicola DSM 245 6356143 Clim_R0035 tRNA Clim_R0035 NC_010803.1 1490571 1490644 D tRNA-Cys 1490571..1490644 Chlorobium limicola DSM 245 6356155 Clim_R0036 tRNA Clim_R0036 NC_010803.1 1592679 1592771 R tRNA-Ser complement(1592679..1592771) Chlorobium limicola DSM 245 6354801 Clim_R0037 tRNA Clim_R0037 NC_010803.1 1592786 1592868 R tRNA-Ser complement(1592786..1592868) Chlorobium limicola DSM 245 6354802 Clim_R0038 tRNA Clim_R0038 NC_010803.1 1593387 1593477 R tRNA-Ser complement(1593387..1593477) Chlorobium limicola DSM 245 6354803 Clim_R0039 tRNA Clim_R0039 NC_010803.1 1634260 1634333 D tRNA-Met 1634260..1634333 Chlorobium limicola DSM 245 6355770 Clim_R0040 tRNA Clim_R0040 NC_010803.1 1634343 1634415 D tRNA-Gly 1634343..1634415 Chlorobium limicola DSM 245 6355771 Clim_R0041 tRNA Clim_R0041 NC_010803.1 1674926 1675010 D tRNA-Leu 1674926..1675010 Chlorobium limicola DSM 245 6354202 Clim_R0042 tRNA Clim_R0042 NC_010803.1 1763053 1763127 R tRNA-Lys complement(1763053..1763127) Chlorobium limicola DSM 245 6355815 Clim_R0043 tRNA Clim_R0043 NC_010803.1 1769606 1769677 R tRNA-Glu complement(1769606..1769677) Chlorobium limicola DSM 245 6353938 Clim_R0044 tRNA Clim_R0044 NC_010803.1 1769685 1769758 R tRNA-His complement(1769685..1769758) Chlorobium limicola DSM 245 6353939 Clim_R0045 tRNA Clim_R0045 NC_010803.1 1769782 1769857 R tRNA-Arg complement(1769782..1769857) Chlorobium limicola DSM 245 6353940 Clim_R0046 tRNA Clim_R0046 NC_010803.1 1769886 1769958 R tRNA-Pro complement(1769886..1769958) Chlorobium limicola DSM 245 6353941 Clim_R0047 tRNA Clim_R0047 NC_010803.1 1780554 1780625 R tRNA-Gln complement(1780554..1780625) Chlorobium limicola DSM 245 6353949 Clim_R0048 tRNA Clim_R0048 NC_010803.1 1945433 1945505 D tRNA-Ala 1945433..1945505 Chlorobium limicola DSM 245 6354598 Clim_R0049 tRNA Clim_R0049 NC_010803.1 2004883 2004958 D tRNA-Lys 2004883..2004958 Chlorobium limicola DSM 245 6355169 Clim_R0050 tRNA Clim_R0050 NC_010803.1 2140835 2140911 R tRNA-Val complement(2140835..2140911) Chlorobium limicola DSM 245 6354988 Clim_R0051 tRNA Clim_R0051 NC_010803.1 2253037 2253114 D tRNA-Asp 2253037..2253114 Chlorobium limicola DSM 245 6355547 Clim_R0052 tRNA Clim_R0052 NC_010803.1 2451599 2451671 R tRNA-Gly complement(2451599..2451671) Chlorobium limicola DSM 245 6355241 Clim_R0053 tRNA Clim_R0053 NC_010803.1 2555962 2556034 R tRNA-Arg complement(2555962..2556034) Chlorobium limicola DSM 245 6355673 Clim_R0054 tRNA Clim_R0054 NC_010803.1 2728125 2728200 R tRNA-Ala complement(2728125..2728200) Chlorobium limicola DSM 245 6355105 Clim_R0003 rRNA Clim_R0003 NC_010803.1 112995 114488 D 16S ribosomal RNA 112995..114488 Chlorobium limicola DSM 245 6356066 Clim_R0006 rRNA Clim_R0006 NC_010803.1 114985 117896 D 23S ribosomal RNA 114985..117896 Chlorobium limicola DSM 245 6356069 Clim_R0007 rRNA Clim_R0007 NC_010803.1 118011 118118 D 5S ribosomal RNA 118011..118118 Chlorobium limicola DSM 245 6356070 Clim_R0008 rRNA Clim_R0008 NC_010803.1 158563 160056 D 16S ribosomal RNA 158563..160056 Chlorobium limicola DSM 245 6356108 Clim_R0011 rRNA Clim_R0011 NC_010803.1 160553 163465 D 23S ribosomal RNA 160553..163465 Chlorobium limicola DSM 245 6356111 Clim_R0012 rRNA Clim_R0012 NC_010803.1 163580 163687 D 5S ribosomal RNA 163580..163687 Chlorobium limicola DSM 245 6356112