-- dump date 20140619_041608 -- class Genbank::CDS -- table cds_note -- id note YP_001994920.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001994922.1 KEGG: cte:CT1630 Holliday junction DNA helicase RuvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001994923.1 KEGG: mlo:mll0653 hypothetical protein YP_001994925.1 KEGG: cte:CT0141 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_001994926.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: cte:CT1707 Smc family protein YP_001994927.1 PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: fgr:FG07593.1 hypothetical protein YP_001994928.1 PFAM: 3-oxo-5-alpha-steroid 4-dehydrogenase domain protein; Isoprenylcysteine carboxyl methyltransferase; KEGG: ppp:PHYPADRAFT_187807 hypothetical protein Pfam: PEMT ICMT YP_001994929.1 PFAM: Abortive infection protein; KEGG: cph:Cpha266_0361 abortive infection protein YP_001994930.1 KEGG: sru:SRU_1715 hypothetical protein YP_001994931.1 PFAM: phosphatidate cytidylyltransferase; KEGG: cte:CT0233 phosphatidate cytidylyltransferase YP_001994932.1 TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: cch:Cag_1468 PTS IIA-like nitrogen-regulatory protein PtsN YP_001994933.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001994934.1 PFAM: OmpA/MotB domain protein; KEGG: sus:Acid_0513 OmpA/MotB domain protein YP_001994935.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sru:SRU_1409 probable toxin secretion ABC transporter ATP-binding protein YP_001994936.1 KEGG: sru:SRU_1408 HlyD family secretion protein YP_001994937.1 PFAM: outer membrane efflux protein; KEGG: sru:SRU_1407 outer membrane efflux protein YP_001994938.1 KEGG: cth:Cthe_0806 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_001994939.1 PFAM: response regulator receiver; KEGG: nmu:Nmul_A1288 response regulator receiver domain protein (CheY-like) YP_001994940.1 KEGG: nmu:Nmul_A1289 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001994941.1 KEGG: bba:Bd3498 hypothetical protein YP_001994942.1 PFAM: KWG Leptospira repeat protein; KEGG: ana:all4040 unknown protein YP_001994943.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: gfo:GFO_3394 secreted PAP2 superfamily protein YP_001994944.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_001994946.1 KEGG: ter:Tery_2811 tetratricopeptide TPR_2; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001994947.1 PFAM: protein of unknown function DUF205; KEGG: cph:Cpha266_2581 acyl-phosphate glycerol-3-phosphate acyltransferase YP_001994948.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001994949.1 KEGG: pdi:BDI_3738 hypothetical protein YP_001994950.1 contains 3'-5'exonuclease domain YP_001994951.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT1646 tetrapyrrole methylase family protein YP_001994952.1 KEGG: cte:CT1647 pantoate-beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_001994953.1 PFAM: class II aldolase/adducin family protein; KEGG: cpy:Cphy_1177 class II aldolase/adducin family protein YP_001994954.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_001994955.1 PFAM: protein of unknown function DUF167; KEGG: drm:Dred_0717 protein of unknown function DUF167 YP_001994957.1 KEGG: sru:SRU_0997 hypothetical protein YP_001994958.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sru:SRU_0803 site-specific recombinase, phage integrase family YP_001994959.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: cph:Cpha266_0050 redoxin domain protein YP_001994960.1 KEGG: cph:Cpha266_0250 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3 YP_001994961.1 PFAM: glutamine synthetase catalytic region; KEGG: pvi:Cvib_1230 glutamine synthetase, catalytic region YP_001994962.1 PFAM: regulatory protein AsnC/Lrp family; regulatory protein Crp; regulatory protein ArsR; KEGG: plt:Plut_1414 transcriptional regulator, AsnC family YP_001994963.1 KEGG: lma:LmjF35.0290 hypothetical protein, conserved YP_001994966.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nar:Saro_0754 TonB-dependent receptor YP_001994967.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: syp:SYNPCC7002_A1715 UDP-glucose 4-epimerase YP_001994968.1 KEGG: cte:CT1673 hypothetical protein YP_001994969.1 TIGRFAM: cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cyb:CYB_2315 cysteine synthase B YP_001994971.1 SMART: Mov34/MPN/PAD-1 family protein; KEGG: rxy:Rxyl_0745 Mov34/MPN/PAD-1 YP_001994972.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: mgm:Mmc1_1941 nitrogen fixation-related protein YP_001994973.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_001994974.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rba:RB9164 conserved hypothetical protein- thiol-disulfide isomerase or thioredoxin YP_001994975.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; NmrA family protein; Male sterility domain; KEGG: cph:Cpha266_2290 NAD-dependent epimerase/dehydratase YP_001994976.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sru:SRU_0828 pyruvate carboxylase YP_001994977.1 TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; KEGG: aba:Acid345_0481 heat shock protein DnaJ-like YP_001994978.1 PFAM: peptidase M16 domain protein; KEGG: cte:CT1932 peptidase, M16 family YP_001994979.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: fjo:Fjoh_2374 chaperone DnaJ domain protein YP_001994980.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sru:SRU_0496 NADH dehydrogenase I, I subunit YP_001994981.1 KEGG: cte:CT0653 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001994982.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: cte:CT0140 iojap-related protein YP_001994983.1 PFAM: peptidase M22 glycoprotease; KEGG: cph:Cpha266_2665 peptidase M22, glycoprotease YP_001994984.1 PFAM: protein of unknown function UPF0079; KEGG: cch:Cag_1987 hypothetical protein YP_001994986.1 PFAM: cell wall hydrolase/autolysin; KEGG: cph:Cpha266_0110 N-acetylmuramoyl-L-alanine amidase YP_001994987.1 KEGG: atc:AGR_L_863gl hypothetical protein YP_001994988.1 KEGG: pna:Pnap_3015 hypothetical protein YP_001994989.1 PFAM: Radical SAM domain protein; KEGG: pth:PTH_0928 uncharacterized Fe-S protein YP_001994990.1 PFAM: PEBP family protein; KEGG: eba:ebA6371 hypothetical protein YP_001994991.1 PFAM: nitroreductase; KEGG: sat:SYN_01293 oxygen-insensitive NAD(P)H nitroreductase / dihydropteridine reductase YP_001994993.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfu:Sfum_3382 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_001994994.1 PFAM: KaiB domain protein; KEGG: mma:MM_1091 thiol-disulfide isomerase YP_001994995.1 acts as a promotor non-specific transcription repressor YP_001994996.1 KEGG: scl:sce6765 hypothetical protein YP_001994997.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_001994998.1 KEGG: dps:DP2912 hypothetical protein YP_001994999.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ote:Oter_1584 GCN5-related N-acetyltransferase YP_001995001.1 KEGG: cph:Cpha266_0474 hypothetical protein YP_001995002.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_0590 protein of unknown function DUF214 YP_001995003.1 KEGG: cph:Cpha266_1734 hypothetical protein YP_001995004.1 KEGG: cte:CT1489 hypothetical protein YP_001995005.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1487 hemK protein YP_001995006.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: rxy:Rxyl_1761 3-hydroxybutyryl-CoA dehydrogenase YP_001995007.1 PFAM: Abortive infection protein; KEGG: cch:Cag_1314 hypothetical protein YP_001995008.1 KEGG: plt:Plut_1699 DNA ligase (NAD+); TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase YP_001995009.1 PFAM: ComEC/Rec2-related protein; KEGG: cph:Cpha266_1722 ComEC/Rec2-related protein YP_001995010.1 PFAM: HesB/YadR/YfhF-family protein; KEGG: btl:BALH_4472 hypothetical protein YP_001995011.1 KEGG: cph:Cpha266_0401 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_001995012.1 This protein performs the mismatch recognition step during the DNA repair process YP_001995013.1 KEGG: rrs:RoseRS_2932 hypothetical protein YP_001995014.1 PFAM: ribosomal protein L21; KEGG: plt:Plut_1508 50S ribosomal protein L21 YP_001995015.1 involved in the peptidyltransferase reaction during translation YP_001995016.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_001995017.1 PFAM: peptidase M61 domain protein; KEGG: syp:SYNPCC7002_A1862 M61 glycyl aminopeptidase protein YP_001995018.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001995019.1 KEGG: sru:SRU_0361 alpha-amylase YP_001995020.1 KEGG: gme:Gmet_1031 protein of unknown function DUF1573 YP_001995021.1 PFAM: Radical SAM domain protein; KEGG: dol:Dole_2461 radical SAM domain protein YP_001995022.1 KEGG: fjo:Fjoh_1945 hypothetical protein YP_001995023.1 TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; KEGG: spe:Spro_0180 frataxin family protein YP_001995024.1 KEGG: sru:SRU_0537 peptidase YP_001995025.1 KEGG: gur:Gura_4187 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_001995026.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: azo:azo3561 cobalamin synthase YP_001995027.1 PFAM: Phosphoglycerate mutase; KEGG: mfa:Mfla_0100 phosphoglycerate mutase YP_001995028.1 KEGG: ote:Oter_1909 hypothetical protein YP_001995029.1 PFAM: Radical SAM domain protein; KEGG: rrs:RoseRS_0808 radical SAM domain protein YP_001995030.1 PFAM: TonB-dependent receptor plug; KEGG: pdi:BDI_3481 TonB dependent outer membrane protein YP_001995031.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_001995032.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001995033.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001995034.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001995035.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: plt:Plut_1730 rod shape-determining protein RodA YP_001995036.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: afw:Anae109_2782 protein of unknown function DUF6 transmembrane YP_001995037.1 PFAM: protein of unknown function DUF202; KEGG: cno:NT01CX_0294 hypothetical protein YP_001995038.1 KEGG: rca:Rcas_2174 uncharacterized component of anaerobic dehydrogenase-like protein YP_001995039.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cau:Caur_3201 nitrate reductase YP_001995040.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Polysulphide reductase NrfD; KEGG: rrs:RoseRS_1792 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001995042.1 KEGG: bam:Bamb_0428 radical SAM domain protein YP_001995043.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: sai:Saci_0351 biotin/lipoate A/B protein ligase YP_001995044.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mta:Moth_0445 radical SAM YP_001995045.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aae:aq_403 hypothetical protein YP_001995046.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: sai:Saci_0345 biotin/lipoate A/B protein ligase family YP_001995047.1 PFAM: glycine cleavage H-protein; KEGG: aby:ABAYE2103 glycine cleavage complex protein H, carrier of aminomethyl moiety via covalently bound lipoyl cofactor YP_001995048.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ttj:TTHA1117 iron-sulfur protein YP_001995049.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: nph:NP3168A electron transfer flavoprotein, alpha subunit YP_001995050.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: afu:AF0286 electron transfer flavoprotein, subunit beta YP_001995051.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sat:SYN_01643 Fe-S oxidoreductase YP_001995052.1 KEGG: aae:aq_397 hypothetical protein YP_001995054.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aae:aq_395 heterodisulfide reductase subunit A YP_001995055.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sso:SSO1129 Heterodisulfite reductase, subunit B (HdrB-1) YP_001995056.1 KEGG: aae:aq_391 hypothetical protein YP_001995057.1 KEGG: llm:llmg_0779 thioredoxin YP_001995058.1 PFAM: glycine cleavage H-protein; KEGG: aae:aq_944 glycine cleavage system protein H YP_001995059.1 PFAM: DsrE family protein; KEGG: aae:aq_401 hypothetical protein YP_001995060.1 KEGG: cte:CT1324 DNA polymerase III, gamma/tau subunit; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_001995061.1 KEGG: cph:Cpha266_1651 DNA polymerase III, gamma/tau subunit YP_001995062.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: tcx:Tcr_0935 Mg2+ transporter protein, CorA-like YP_001995063.1 KEGG: mbn:Mboo_1812 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001995064.1 PFAM: response regulator receiver; KEGG: mbu:Mbur_2285 response regulator receiver YP_001995065.1 KEGG: gfo:GFO_0037 membrane protein containing adenylate/guanylate cyclase catalytic domain YP_001995066.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: ava:Ava_1786 Oligopeptidase B. Serine peptidase. MEROPS family S09A YP_001995067.1 PFAM: regulatory protein MarR; KEGG: chu:CHU_0954 transcriptional regulator YP_001995068.1 PFAM: YceI family protein; KEGG: fjo:Fjoh_1733 YceI family protein YP_001995069.1 PFAM: phosphofructokinase; KEGG: rca:Rcas_2513 6-phosphofructokinase YP_001995070.1 PFAM: RNP-1 like RNA-binding protein; KEGG: dvl:Dvul_1024 RNP-1 like RNA-binding protein YP_001995071.1 KEGG: pca:Pcar_2082 predicted exporter of the RND superfamily YP_001995072.1 KEGG: vpa:VPA0561 hypothetical protein YP_001995073.1 KEGG: tde:TDE2009 hypothetical protein YP_001995074.1 PFAM: regulatory protein TetR; KEGG: nfa:nfa37280 transcriptional regulator YP_001995075.1 SMART: zinc finger CDGSH-type domain protein; KEGG: sus:Acid_5312 zinc finger, CDGSH-type domain protein YP_001995076.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: cte:CT1256 histidinol-phosphate aminotransferase YP_001995077.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cph:Cpha266_1411 tRNA/rRNA methyltransferase (SpoU) YP_001995078.1 PFAM: Rubrerythrin; KEGG: dol:Dole_2647 rubrerythrin YP_001995079.1 PFAM: ferredoxin-dependent glutamate synthase; Rubredoxin-type Fe(Cys)4 protein; KEGG: mmp:MMP0496 glutamate synthase subunit-related YP_001995080.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: cph:Cpha266_0175 succinate dehydrogenase subunit C YP_001995081.1 KEGG: cte:CT2041 succinate/fumarate oxidoreductase, iron-sulfur protein, TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin YP_001995082.1 KEGG: cph:Cpha266_0176 succinate dehydrogenase subunit B; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin YP_001995083.1 KEGG: cph:Cpha266_0177 succinate dehydrogenase subunit A; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001995084.1 PFAM: CBS domain containing protein; KEGG: cte:CT2044 CBS domain protein YP_001995086.1 KEGG: cph:Cpha266_2286 hypothetical protein YP_001995087.1 PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: cch:Cag_1625 helix-hairpin-helix DNA-binding, class 1 YP_001995088.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_001995089.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_001995090.1 PFAM: OsmC family protein; KEGG: ade:Adeh_4072 hypothetical protein YP_001995091.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; FeoA family protein; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: pdi:BDI_1461 ferrous iron transport protein B YP_001995092.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001995093.1 KEGG: plt:Plut_1434 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit YP_001995094.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: pvi:Cvib_1250 biotin/lipoyl attachment domain-containing protein YP_001995095.1 KEGG: pvi:Cvib_1249 hypothetical protein YP_001995096.1 PFAM: carboxyl transferase; KEGG: plt:Plut_1431 propionyl-CoA carboxylase beta chain YP_001995097.1 KEGG: cph:Cpha266_1548 hypothetical protein YP_001995098.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; regulatory protein LacI; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: cte:CT1193 RNA polymerase sigma-54 factor YP_001995099.1 heat shock protein involved in degradation of misfolded proteins YP_001995100.1 heat shock protein involved in degradation of misfolded proteins YP_001995101.1 PFAM: protein of unknown function UPF0005; KEGG: dvl:Dvul_0772 protein of unknown function UPF0005 YP_001995102.1 KEGG: pai:PAE3582 hypothetical protein YP_001995103.1 PFAM: thioesterase superfamily protein; KEGG: cvi:CV_1941 hypothetical protein YP_001995104.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001995105.1 PFAM: protein of unknown function DUF179; KEGG: cte:CT0663 transcriptional regulator YP_001995106.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: sru:SRU_0687 nuclease SbcCD, D subunit subfamily YP_001995107.1 KEGG: mar:MAE_17510 serine/threonine protein kinase with WD40 repeats YP_001995108.1 PFAM: GCN5-related N-acetyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: tdn:Tmden_0615 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001995109.1 KEGG: pvi:Cvib_1386 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_001995110.1 PFAM: metallophosphoesterase; KEGG: cph:Cpha266_0595 metallophosphoesterase YP_001995112.1 KEGG: vfi:VF2457 hypothetical protein YP_001995113.1 PFAM: metalloenzyme domain protein; KEGG: rca:Rcas_0933 metalloenzyme domain protein YP_001995114.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cte:CT1371 diaminopimelate decarboxylase YP_001995115.1 KEGG: yli:YALI0A17853g hypothetical protein YP_001995116.1 TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase component 1; KEGG: cte:CT1826 chlorophyllide reductase, BchY subunit YP_001995117.1 PFAM: Sporulation domain protein; KEGG: pap:PSPA7_5789 hypothetical protein YP_001995118.1 KEGG: cph:Cpha266_2076 sporulation domain protein YP_001995119.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: vvy:VV2044 sodium/alanine symporter YP_001995120.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tet:TTHERM_00864990 TPR Domain containing protein Pfam: TPR_3 TPR_2 TPR_1 Sel1 MIT FAT PROSITE: TPR TPR_REGION YP_001995121.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_2087 tetratricopeptide TPR_2 repeat protein YP_001995122.1 KEGG: gur:Gura_2308 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_001995123.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_001995124.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: sus:Acid_3142 NADP oxidoreductase, coenzyme F420-dependent YP_001995125.1 PFAM: OmpA/MotB domain protein; KEGG: lbi:LEPBI_I0545 hypothetical protein YP_001995126.1 TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cte:CT1340 CDP-diacylglycerol-serine O-phosphatidyltransferase YP_001995127.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: plt:Plut_1326 phosphoribosylformylglycinamidine synthetase PurS YP_001995128.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001995130.1 PFAM: major facilitator superfamily MFS_1; KEGG: cte:CT1337 MFS transporter family protein YP_001995131.1 KEGG: pvi:Cvib_1210 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_001995132.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cte:CT1424 GTP-binding elongation factor family protein, TypA subfamily YP_001995133.1 KEGG: tde:TDE0206 surface antigen YP_001995134.1 KEGG: afw:Anae109_2849 hypothetical protein YP_001995135.1 PFAM: phosphatidate cytidylyltransferase; protein of unknown function DUF92 transmembrane; KEGG: cph:Cpha266_0855 protein of unknown function DUF92, transmembrane YP_001995136.1 PFAM: FAD dependent oxidoreductase; KEGG: bcl:ABC4035 hypothetical protein YP_001995137.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; KEGG: cph:Cpha266_2306 8-amino-7-oxononanoate synthase YP_001995138.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cte:CT1949 NAD-dependent epimerase/dehydratase family protein/3-beta hydroxysteroid dehydrogenase/isomerase family protein YP_001995139.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_001995140.1 KEGG: mxa:MXAN_2060 hypothetical protein YP_001995141.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: chu:CHU_0195 sigma factor SigB regulation protein YP_001995142.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: fnu:FN1914 anti-sigma F factor antagonist YP_001995143.1 KEGG: cau:Caur_1060 anti-anti-sigma factor YP_001995144.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: aba:Acid345_3068 serine phosphatase YP_001995145.1 KEGG: cph:Cpha266_1871 Proto-chlorophyllide reductase 57 kD subunit YP_001995146.1 TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: aba:Acid345_0478 hypothetical protein YP_001995147.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_001995148.1 PFAM: Fibronectin type III domain protein; KEGG: mbr:MONBRDRAFT_12802 hypothetical protein Pfam: FG-GAP RepA1_leader YP_001995149.1 PFAM: GLUG domain protein; KEGG: swo:Swol_1078 surface proteins containing Ig-like domains-like YP_001995150.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_001995151.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: gvi:glr3963 thiol-disulfide interchange protein DsbD homolog YP_001995152.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mpt:Mpe_A1488 hypothetical protein YP_001995154.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: amr:AM1_1670 subtilase family protein YP_001995155.1 TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: aby:ABAYE3402 secretion chaperone CsaA YP_001995156.1 PFAM: glycosyl transferase group 1; KEGG: deb:DehaBAV1_0869 phosphatidylinositol alpha-mannosyltransferase YP_001995157.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: plt:Plut_1355 GTP-binding protein HflX YP_001995158.1 PFAM: Squalene/phytoene synthase; KEGG: cch:Cag_1175 phytoene desaturase YP_001995159.1 KEGG: pvi:Cvib_0135 hypothetical protein YP_001995160.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_001995161.1 PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: plt:Plut_1519 hypothetical protein YP_001995162.1 PFAM: UspA domain protein; KEGG: pdi:BDI_0955 universal stress protein UspA YP_001995163.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cte:CT0090 glycosyl hydrolase, family 3 YP_001995165.1 PFAM: Inorganic pyrophosphatase; KEGG: mka:MK1450 inorganic pyrophosphatase YP_001995167.1 KEGG: vok:COSY_0226 L-asparaginase YP_001995168.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sus:Acid_4696 anti-sigma-factor antagonist YP_001995169.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_001995170.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_001995171.1 TIGRFAM: inosine guanosine and xanthosine phosphorylase family; PFAM: purine phosphorylase family 2; KEGG: lwe:lwe1979 purine nucleoside phosphorylase YP_001995172.1 KEGG: cte:CT1935 holo-[acyl-carrier protein] synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase YP_001995173.1 KEGG: plt:Plut_0270 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_001995174.1 PFAM: peptidase S16 lon domain protein; KEGG: sru:SRU_1204 ATP-dependent protease La domain protein YP_001995175.1 TIGRFAM: dihydroneopterin aldolase; KEGG: pvi:Cvib_0334 dihydroneopterin aldolase YP_001995176.1 KEGG: cph:Cpha266_2295 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_001995178.1 PFAM: GPW/gp25 family protein; KEGG: mca:MCA2908 prophage MuMc02, baseplate assembly protein W YP_001995179.1 TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: sec:SC4086 phage baseplate component YP_001995180.1 PFAM: late control D family protein; KEGG: mca:MCA2911 prophage MuMc02, late control gene D protein YP_001995182.1 KEGG: sec:SC4088 inner membrane protein YP_001995183.1 KEGG: cvi:CV_2120 hypothetical protein YP_001995184.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: dac:Daci_2622 phage tail tape measure protein, TP901 family YP_001995185.1 KEGG: sgl:SG0856 phage tail fiber protein YP_001995186.1 PFAM: Baseplate J family protein; KEGG: cvi:CV_2115 probable bacteriophage tail fiber protein YP_001995188.1 TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: mca:MCA2918 prophage MuMc02, major tail tube protein YP_001995189.1 PFAM: tail sheath protein; KEGG: mca:MCA2919 prophage MuMc02, tail sheath protein YP_001995190.1 KEGG: cvi:CV_0429 probable bacteriophage tail fiber protein YP_001995191.1 KEGG: mca:MCA2921 hypothetical protein YP_001995192.1 KEGG: pat:Patl_4200 hypothetical protein YP_001995193.1 KEGG: vfi:VF2017 L-alanyl-D-glutamate peptidase YP_001995194.1 KEGG: ava:Ava_3116 hypothetical protein YP_001995195.1 KEGG: gfo:GFO_3474 hypothetical protein YP_001995196.1 KEGG: sbn:Sbal195_2124 Mor transcription activator domain protein YP_001995198.1 KEGG: ppd:Ppro_2386 hypothetical protein YP_001995201.1 KEGG: ypy:YPK_0215 transcriptional regulator, XRE family YP_001995202.1 KEGG: btr:Btr_1421 transposase (class III) YP_001995204.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: pvi:Cvib_0894 prophage repressor YP_001995205.1 KEGG: cte:CT1939 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001995206.1 KEGG: cph:Cpha266_2298 hypothetical protein YP_001995207.1 PFAM: bacteriochlorophyll C binding protein; KEGG: cph:Cpha266_2299 bacteriochlorophyll C binding protein YP_001995209.1 KEGG: cte:CT1943 chlorosome envelope protein C YP_001995210.1 KEGG: cch:Cag_0117 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001995211.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: gme:Gmet_2556 peptidoglycan-binding LysM:lytic transglycosylase, catalytic YP_001995212.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sru:SRU_1028 tetratricopeptide repeat family YP_001995213.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cph:Cpha266_2302 dihydroorotate oxidase B, electron transfer subunit YP_001995214.1 PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1473 hypothetical protein YP_001995215.1 PFAM: glycosyl transferase family 9; KEGG: pvi:Cvib_0687 glycosyl transferase, family 9 YP_001995216.1 KEGG: cte:CT0190 hypothetical protein YP_001995217.1 KEGG: lbl:LBL_1341 cytoplasmic membrane protein, ImpL63 YP_001995218.1 PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_0334 ATPase AAA-2 domain protein YP_001995219.1 PFAM: PSP1 domain protein; KEGG: gfo:GFO_3243 protein containing PSP1 C-terminal domain YP_001995220.1 PFAM: cyclase/dehydrase; KEGG: ter:Tery_3513 hypothetical protein YP_001995221.1 KEGG: cph:Cpha266_0558 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001995222.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: cte:CT0029 4-hydroxybutyrate coenzyme A transferase YP_001995223.1 KEGG: rno:689787 hypothetical protein LOC689787 YP_001995224.1 KEGG: cph:Cpha266_1734 hypothetical protein YP_001995225.1 KEGG: ote:Oter_2876 ferredoxin YP_001995228.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mxa:MXAN_4081 ATP-dependent RNA helicase RhlE YP_001995229.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: cph:Cpha266_0035 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001995230.1 KEGG: sru:SRU_1798 hypothetical protein YP_001995231.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: chu:CHU_0192 possible peptidyl-prolyl cis-trans isomerase YP_001995232.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00410 ABC-type transport system, ATP-binding component YP_001995233.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: dau:Daud_1183 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001995234.1 KEGG: rba:RB1252 hypothetical protein YP_001995235.1 KEGG: rba:RB1250 probable permease of ABC transporter YP_001995236.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rba:RB1248 ABC-type multidrug transport system, ATPase component YP_001995237.1 PFAM: thioesterase superfamily protein; KEGG: cth:Cthe_2687 thioesterase superfamily YP_001995238.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gtn:GTNG_0896 NADPH quinone oxidoreductase YP_001995239.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_001995240.1 KEGG: cak:Caul_1257 hypothetical protein YP_001995243.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: noc:Noc_0709 TRAP dicarboxylate transporter, DctM subunit YP_001995244.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: noc:Noc_0710 tripartite ATP-independent periplasmic transporter, DctQ component YP_001995245.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: cph:Cpha266_0577 twin-arginine translocation protein, TatA/E family subunit YP_001995246.1 PFAM: N-6 DNA methylase; Eco57I restriction endonuclease; KEGG: ttj:TTHA1583 site-specific DNA-methyltransferase (adenine-specific) TthHB8I YP_001995247.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001995248.1 PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: hau:Haur_2718 cytochrome c-type biogenesis protein CcmB YP_001995249.1 KEGG: cch:Cag_1778 DNA polymerase III, delta subunit YP_001995250.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001995251.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: cte:CT0967 hypothetical protein YP_001995252.1 PFAM: Rhodanese domain protein; KEGG: bur:Bcep18194_A4015 rhodanese-related sulfurtransferase YP_001995253.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: ote:Oter_3671 protein tyrosine phosphatase YP_001995254.1 KEGG: nar:Saro_3116 DedA YP_001995255.1 KEGG: cte:CT0202 protein-L-isoaspartate (D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001995256.1 PFAM: DegV family protein; KEGG: tpd:Teth39_1304 DegV family protein YP_001995257.1 PFAM: ApaG domain protein; KEGG: reu:Reut_A3020 ApaG YP_001995258.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: chu:CHU_1807 hypothetical protein YP_001995259.1 PFAM: glycosyl transferase family 9; KEGG: cph:Cpha266_2514 glycosyl transferase, family 9 YP_001995260.1 PFAM: 5'-Nucleotidase domain protein; KEGG: syn:sll0654 alkaline phosphatase YP_001995262.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: cte:CT1894 hydrogenase/sulfur reductase, alpha subunit YP_001995263.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cph:Cpha266_2168 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_001995264.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cch:Cag_1567 hydrogenase/sulfur reductase, gamma subunit YP_001995265.1 KEGG: cte:CT1891 hydrogenase/sulfur reductase, beta subunit YP_001995266.1 KEGG: sru:SRU_2064 protease DegQ precursor; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001995267.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: pvi:Cvib_1680 DNA repair protein RecO YP_001995268.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: sru:SRU_0505 glutamate dehydrogenase YP_001995269.1 KEGG: cth:Cthe_1938 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein YP_001995270.1 PFAM: glycosyl transferase family 2; KEGG: sru:SRU_1194 glycosyl transferase-related protein YP_001995271.1 PFAM: surface antigen (D15); KEGG: chu:CHU_2430 outer membrane protein YP_001995272.1 PFAM: CoA-binding domain protein; KEGG: cte:CT1344 hypothetical protein YP_001995273.1 PFAM: protein of unknown function DUF344; KEGG: bth:BT_0778 hypothetical protein YP_001995274.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: cph:Cpha266_1659 biotin/lipoate A/B protein ligase YP_001995275.1 PFAM: glycosyl transferase family 2; KEGG: mth:MTH377 dolichyl-phosphate mannose synthase related protein YP_001995276.1 KEGG: sco:SCO4901 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase YP_001995277.1 KEGG: hau:Haur_2390 diguanylate cyclase and serine/threonine protein kinase with TPR repeats; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001995278.1 KEGG: cch:Cag_0712 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_001995279.1 KEGG: sco:SCO0386 asparagine synthetase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase YP_001995280.1 KEGG: pdi:BDI_0041 hypothetical protein YP_001995281.1 PFAM: protein of unknown function DUF354; KEGG: lch:Lcho_1392 protein of unknown function DUF354 YP_001995282.1 KEGG: rrs:RoseRS_3578 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase YP_001995283.1 PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: cau:Caur_1630 oxidoreductase domain protein YP_001995284.1 KEGG: sus:Acid_2343 hypothetical protein YP_001995285.1 KEGG: sen:SACE_4132 acyl carrier protein YP_001995286.1 KEGG: hne:HNE_2075 AMP-binding domain protein YP_001995287.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sdn:Sden_3106 short-chain dehydrogenase/reductase SDR YP_001995289.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mar:MAE_03610 tetratricopeptide repeat protein YP_001995290.1 PFAM: peptidase S41; WD40 domain protein beta Propeller; KEGG: rrs:RoseRS_1092 peptidase S41 YP_001995291.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: sat:SYN_03611 GTP pyrophosphokinase / guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase YP_001995292.1 PFAM: extracellular solute-binding protein family 3; Lytic transglycosylase catalytic; KEGG: plt:Plut_1004 extracellular solute-binding protein, family 3 YP_001995293.1 KEGG: sde:Sde_3807 hypothetical protein YP_001995294.1 PFAM: glycosyl transferase family 2; KEGG: pdi:BDI_1297 glycosyltransferase family 2 YP_001995295.1 PFAM: glycosyl transferase family 2; KEGG: rca:Rcas_1348 glycosyl transferase family 2 YP_001995296.1 KEGG: cph:Cpha266_0789 hypothetical protein YP_001995297.1 KEGG: cch:Cag_1503 hypothetical protein YP_001995298.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0788 tetratricopeptide TPR_2 repeat protein YP_001995299.1 KEGG: bth:BT_0521 acetyl transferase YP_001995300.1 PFAM: glycosyl transferase group 1; KEGG: hmo:HM1_1182 glycosyl transferase, group 1 family protein YP_001995301.1 PFAM: glycosyl transferase family 2; KEGG: mma:MM_2102 glycosyltransferase YP_001995302.1 PFAM: polysaccharide biosynthesis protein; KEGG: ava:Ava_0839 polysaccharide biosynthesis protein YP_001995303.1 PFAM: glycosyl transferase group 1; KEGG: mma:MM_0650 mannosyltransferase YP_001995304.1 PFAM: glycosyl transferase group 1; KEGG: mba:Mbar_A0239 mannosyltransferase YP_001995305.1 KEGG: pdi:BDI_1279 hypothetical protein YP_001995306.1 probably involved in cell wall biogenesis; KEGG: bth:BT_1167 hypothetical protein YP_001995307.1 KEGG: pdi:BDI_1278 hypothetical protein YP_001995308.1 KEGG: mar:MAE_14730 outer membrane efflux protein YP_001995309.1 PFAM: sugar transferase; SMART: response regulator receiver; KEGG: bth:BT_0523 glycosyltransferase YP_001995310.1 PFAM: response regulator receiver; KEGG: bvu:BVU_3956 two-component system response regulator YP_001995311.1 KEGG: dde:Dde_1864 glucosamine 6-phosphate synthetase-like YP_001995312.1 PFAM: glycosyl transferase family 9; KEGG: pne:Pnec_1535 lipopolysaccharide heptosyltransferase II YP_001995313.1 KEGG: amt:Amet_1899 ATPase associated with various cellular activities, AAA_5 YP_001995314.1 KEGG: hau:Haur_0381 hypothetical protein YP_001995316.1 PFAM: Roadblock/LC7 family protein; KEGG: ace:Acel_1325 roadblock/LC7 family protein YP_001995318.1 KEGG: ttj:TTHA1132 probable gliding protein MglA YP_001995319.1 PFAM: Roadblock/LC7 family protein; KEGG: gme:Gmet_3418 roadblock/LC7 YP_001995320.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_0386 protein of unknown function DUF214 YP_001995321.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_001995322.1 PFAM: Polyprenyl synthetase; KEGG: cph:Cpha266_0384 polyprenyl synthetase YP_001995323.1 KEGG: gfo:GFO_2394 hypothetical protein YP_001995324.1 PFAM: nitrogen regulatory protein P-II; KEGG: plt:Plut_1164 nitrogen regulatory protein P-II (GlnB, GlnK) YP_001995325.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: plt:Plut_1163 ammonium transporter YP_001995326.1 KEGG: chu:CHU_3732 conserved hypothetical protein; possible outer membrane protein YP_001995327.1 PFAM: HEAT domain containing protein; peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: sru:SRU_2431 peptidyl-prolyl cis-trans isomerase, cyclophilin-type domain protein YP_001995328.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_1487 signal transduction histidine kinase, nitrogen specific, NtrB YP_001995329.1 KEGG: hau:Haur_4902 hypothetical protein YP_001995330.1 PFAM: protein of unknown function DUF58; SMART: von Willebrand factor type A; KEGG: gfo:GFO_3411 hypothetical protein YP_001995332.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: mms:mma_1769 cobalt/zinc/cadmium efflux RND transporter, permease protein, CzcA family YP_001995333.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mfa:Mfla_0503 secretion protein HlyD YP_001995335.1 PFAM: outer membrane efflux protein; KEGG: mfa:Mfla_2553 outer membrane efflux protein YP_001995336.1 PFAM: protein of unknown function DUF87; KEGG: gvi:glr4405 hypothetical protein YP_001995337.1 PFAM: membrane protein of unknown function; KEGG: cph:Cpha266_0995 membrane protein of unknown function YP_001995338.1 KEGG: gme:Gmet_0138 hypothetical protein YP_001995340.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_001995341.1 SMART: Tetratricopeptide domain protein YP_001995342.1 TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: cch:Cag_1970 hypothetical protein YP_001995344.1 KEGG: sbn:Sbal195_3679 hypothetical protein YP_001995345.1 PFAM: ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: plt:Plut_2054 ATPase YP_001995346.1 PFAM: Na+/H+ antiporter NhaA; KEGG: sde:Sde_1762 NA(+)/H(+) antiporter 1 YP_001995347.1 PFAM: dehydrogenase E1 component; Transketolase central region; Transketolase domain protein; KEGG: sru:SRU_0576 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta subunit YP_001995348.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: gfo:GFO_2925 lipoyltransferase YP_001995349.1 PFAM: glycosyl transferase family 9; KEGG: gme:Gmet_2881 ADP-heptose:LPS heptosyltransferase-like YP_001995350.1 PFAM: glycosyl transferase group 1; KEGG: sru:SRU_2402 glycosyl transferase YP_001995351.1 KEGG: cte:CT0055 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein YP_001995352.1 KEGG: cch:Cag_1091 hypothetical protein YP_001995353.1 PFAM: cobalt transport protein; KEGG: tpe:Tpen_1104 cobalt transport protein YP_001995354.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mba:Mbar_A3550 cobalt transport ATP-binding protein YP_001995356.1 KEGG: mmw:Mmwyl1_2441 hypothetical protein YP_001995357.1 PFAM: TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: mmw:Mmwyl1_2442 ATPase YP_001995359.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: amt:Amet_1511 cyclopropane-fatty-acyl-phospholipid synthase YP_001995360.1 KEGG: nve:NEMVE_v1g12544 predicted protein PROSITE: CYS_RICH HIS_RICH MET_RICH YP_001995361.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_0454 TonB-dependent outer membrane receptor for cobalamin and Fe transport YP_001995362.1 PFAM: peptidase M48 Ste24p; KEGG: sus:Acid_5576 peptidase M48, Ste24p YP_001995363.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001995364.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cch:Cag_1381 alpha-amylase family protein YP_001995365.1 PFAM: PfkB domain protein; KEGG: cte:CT0976 carbohydrate kinase, PfkB family YP_001995366.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: sru:SRU_2708 UDP-glucuronate decarboxylase YP_001995367.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_001995368.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: prw:PsycPRwf_2007 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001995370.1 PFAM: protein of unknown function DUF134; Sigma-70 region 4 type 2; KEGG: dau:Daud_0090 protein of unknown function DUF134 YP_001995371.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: cch:Cag_0224 DNA polymerase III, delta subunit YP_001995372.1 PFAM: CHAD domain containing protein; KEGG: cyt:cce_0662 hypothetical protein YP_001995373.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vha:VIBHAR_05581 ribosomal-protein-alanine acetyltransferase YP_001995374.1 KEGG: sru:SRU_0485 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase YP_001995375.1 KEGG: sru:SRU_0486 succinate dehydrogenase, membrane subunit YP_001995376.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: sru:SRU_0487 succinate dehydrogenase membrane subunit YP_001995377.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_1453 TPR repeat YP_001995379.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ttj:TTHA1250 acetyl-coenzyme A synthetase YP_001995380.1 PFAM: glutaredoxin; glutaredoxin 2; KEGG: cte:CT0237 hypothetical protein YP_001995381.1 PFAM: deoxynucleoside kinase; KEGG: sru:SRU_0956 deoxyguanosine kinase/deoxyadenosine kinase subunit YP_001995383.1 PFAM: protein of unknown function DUF150; KEGG: cte:CT0239 hypothetical protein YP_001995384.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001995385.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Miro domain protein; KEGG: cch:Cag_1462 translation initiation factor IF-2 YP_001995386.1 PFAM: ribosome-binding factor A; KEGG: cte:CT0242 ribosome-binding factor A YP_001995387.1 PFAM: von Willebrand factor type A; KEGG: pdi:BDI_0948 conserved hypothetical protein BatA YP_001995388.1 TIGRFAM: oligopeptide transporters, OPT superfamily; PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: psp:PSPPH_1251 oligopeptide transporter, OPT family YP_001995389.1 PFAM: response regulator receiver; KEGG: hch:HCH_05925 sigma 54-dependent transcriptional activator containing CheY-like receiver domain YP_001995390.1 PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: cch:Cag_1800 electron transfer flavoprotein-ubiquinone oxidoreductase YP_001995391.1 PFAM: Cytochrome b/b6 domain; KEGG: cch:Cag_0395 cytochrome b-c complex, cytochrome b subunit YP_001995392.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: plt:Plut_1719 plastoquinol--plastocyanin reductase YP_001995393.1 KEGG: cph:Cpha266_1559 hypothetical protein YP_001995394.1 PFAM: Ppx/GppA phosphatase; KEGG: cph:Cpha266_2586 Ppx/GppA phosphatase YP_001995396.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sru:SRU_2292 response regulator DrrA YP_001995397.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: pvi:Cvib_0023 muramoyltetrapeptide carboxypeptidase YP_001995398.1 PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: pvi:Cvib_0024 H+-transporting two-sector ATPase, delta/epsilon subunit YP_001995399.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001995400.1 PFAM: Radical SAM domain protein; KEGG: lpc:LPC_0636 pyruvate formate lyase-activating enzyme PflA YP_001995401.1 PFAM: protein of unknown function DUF52; KEGG: dol:Dole_0299 protein of unknown function DUF52 YP_001995402.1 KEGG: cte:CT1769 hypothetical protein YP_001995403.1 PFAM: WD-40 repeat protein; KEGG: ava:Ava_1556 ribosome assembly protein 4 (RSA4) YP_001995404.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cph:Cpha266_0977 6-pyruvoyl tetrahydropterin synthase and hypothetical protein YP_001995405.1 PFAM: GTP cyclohydrolase I; KEGG: chu:CHU_0955 GTP cyclohydrolase YP_001995406.1 PFAM: polysaccharide deacetylase; KEGG: dsy:DSY2456 hypothetical protein YP_001995407.1 PFAM: protein of unknown function UPF0118; KEGG: eba:ebA7105 hypothetical protein YP_001995408.1 KEGG: gur:Gura_2373 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001995409.1 KEGG: mhu:Mhun_1350 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001995410.1 KEGG: lpf:lpl0994 hypothetical protein YP_001995411.1 PFAM: glycosyl transferase family 2; KEGG: chu:CHU_2174 polysaccharide-forming b-glycosyltransferase-related protein, glycosyltransferase family 2 protein YP_001995412.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: plt:Plut_1922 peptidyl-prolyl cis-trans isomerase, PpiC-type YP_001995413.1 KEGG: plt:Plut_0933 hypothetical protein YP_001995414.1 PFAM: inositol monophosphatase; KEGG: cph:Cpha266_0543 inositol-phosphate phosphatase YP_001995415.1 KEGG: cph:Cpha266_0542 ABC-type branched-chain amino acid transport systems periplasmic component-like YP_001995416.1 KEGG: sru:SRU_1454 hypothetical protein YP_001995417.1 KEGG: mgm:Mmc1_3646 hypothetical protein YP_001995418.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: sat:SYN_01481 adenylate cyclase YP_001995419.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: tel:tlr1214 peptide methionine sulfoxide reductase YP_001995420.1 PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0367 ABC-type transport system, permease component YP_001995421.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_3037 ABC transporter-related protein YP_001995422.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pca:Pcar_0365 membrane-fusion protein YP_001995423.1 KEGG: cte:CT1545 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_001995424.1 SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: sru:SRU_1533 hypothetical protein YP_001995425.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: cte:CT1788 glycine cleavage system T protein YP_001995426.1 PFAM: 2-phosphosulfolactate phosphatase; KEGG: tte:TTE1972 2-phosphosulfolactate phosphatase YP_001995427.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: pvi:Cvib_0452 cell divisionFtsK/SpoIIIE YP_001995428.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_001995429.1 PFAM: glycosyl transferase family 2; KEGG: sth:STH2817 glycosyl transferase YP_001995431.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: mmr:Mmar10_2732 alpha amylase, catalytic region YP_001995432.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: pvi:Cvib_1190 three-deoxy-D-manno-octulosonic-acid transferase domain protein YP_001995433.1 KEGG: cte:CT1770 hypothetical protein YP_001995434.1 TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: pvi:Cvib_0597 queuosine biosynthesis protein YP_001995435.1 KEGG: fal:FRAAL6284 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_001995436.1 KEGG: sru:SRU_1730 hypothetical protein YP_001995437.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cch:Cag_0071 beta-phosphoglucomutase hydrolase YP_001995438.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001995439.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: pvi:Cvib_0352 metal dependent phosphohydrolase YP_001995440.1 KEGG: plt:Plut_0286 hypothetical protein YP_001995441.1 PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_2276 alpha/beta hydrolase fold YP_001995442.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cch:Cag_1639 oxidoreductase, short-chain dehydrogenase/reductase family YP_001995443.1 PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: gme:Gmet_3178 phosphoglucomutase/phosphomannomutase family protein YP_001995444.1 PFAM: regulatory protein RecX; KEGG: cac:CAC2410 uncharacterized protein recX YP_001995445.1 Catalyzes the phosphorylation of UMP to UDP YP_001995446.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001995447.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001995448.1 forms a direct contact with the tRNA during translation YP_001995449.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001995450.1 KEGG: cph:Cpha266_0800 cell shape determining protein, MreB/Mrl family; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; SMART: actin/actin family protein YP_001995451.1 PFAM: glycosyl transferase group 1; KEGG: cte:CT0548 glycosyl transferase YP_001995452.1 KEGG: har:HEAR0719 hypothetical protein YP_001995453.1 PFAM: glycosyl transferase group 1; KEGG: pfu:PF1358 glycosyl transferase YP_001995454.1 PFAM: glycosyl transferase group 1; KEGG: bvu:BVU_0890 conserved hypothetical protein, glycosyltransferase YP_001995455.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001995456.1 KEGG: cte:CT1445 hypothetical protein YP_001995457.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001995458.1 PFAM: PEBP family protein; KEGG: rme:Rmet_0419 YbhB and YbcL YP_001995459.1 KEGG: lbi:LEPBI_I3275 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_001995460.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: pvi:Cvib_0500 alpha amylase, catalytic region YP_001995461.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: cph:Cpha266_2677 orotidine 5'-phosphate decarboxylase YP_001995462.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_001995463.1 KEGG: cch:Cag_0200 competence protein YP_001995464.1 KEGG: fjo:Fjoh_3216 hypothetical protein YP_001995465.1 PFAM: response regulator receiver; KEGG: pae:PA2572 probable two-component response regulator YP_001995466.1 PFAM: Roadblock/LC7 family protein; KEGG: mka:MK1325 predicted regulator of Ras-like GTPase activity, member of the Roadblock/LC7/MglB family YP_001995468.1 TIGRFAM: small GTP-binding protein; PFAM: protein of unknown function ATP binding; Miro domain protein; KEGG: cau:Caur_0665 small GTP-binding protein YP_001995469.1 KEGG: gfo:GFO_1472 ferredoxin-like protein YP_001995470.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ana:alr7635 cation-transporting ATPase YP_001995471.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_001995472.1 PFAM: protein of unknown function DUF190; KEGG: rpc:RPC_2688 protein of unknown function DUF190 YP_001995473.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: pvi:Cvib_1464 NusB antitermination factor YP_001995474.1 PFAM: metallophosphoesterase; KEGG: sru:SRU_0016 serine/threonine protein phosphatase YP_001995475.1 KEGG: plt:Plut_1681 endonuclease III/Nth; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein YP_001995476.1 PFAM: protein of unknown function DUF520; KEGG: aoe:Clos_1967 protein of unknown function DUF520 YP_001995477.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cph:Cpha266_2499 glycoside hydrolase, family 3 domain protein YP_001995478.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_001995479.1 PFAM: protein of unknown function DUF820; KEGG: ava:Ava_1442 protein of unknown function DUF820 YP_001995480.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001995481.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpu:BPUM_0412 possible acetyltransferase YP_001995482.1 KEGG: cte:CT0607 hypothetical protein YP_001995483.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_001995485.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_0578 ATPase YP_001995486.1 KEGG: cte:CT0591 pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_001995487.1 KEGG: cph:Cpha266_1779 hypothetical protein YP_001995488.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: fjo:Fjoh_1727 DegT/DnrJ/EryC1/StrS aminotransferase YP_001995489.1 KEGG: rrs:RoseRS_4436 glycosyltransferase-like protein YP_001995490.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_001995491.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: cte:CT0087 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_001995492.1 KEGG: cyt:cce_4458 hypothetical protein YP_001995493.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sru:SRU_0571 glycerophosphoryl diester phosphodiesterase YP_001995494.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: spl:Spea_3152 rare lipoprotein A YP_001995495.1 PFAM: glycosyl transferase family 2; KEGG: plt:Plut_0242 glycosyl transferase YP_001995496.1 KEGG: plt:Plut_1173 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001995497.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: cbb:CLD_2681 molybdopterin biosynthesis enzyme Mog YP_001995498.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_001995499.1 PFAM: metallophosphoesterase; KEGG: cte:CT1989 hypothetical protein YP_001995500.1 catalyzes the synthesis of bacteriochlorophyll c which is the primary pigment in the chlorosomes of the photosynthetic green bacteria YP_001995501.1 KEGG: chu:CHU_1821 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001995502.1 PFAM: protein of unknown function DUF214; KEGG: ote:Oter_1640 protein of unknown function DUF214 YP_001995503.1 PFAM: protein of unknown function DUF214; KEGG: cte:CT1350 ABC transporter efflux protein YP_001995504.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ote:Oter_1638 ABC transporter related YP_001995505.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cte:CT0260 phosphoglucomutase/phosphomannomutase family protein YP_001995506.1 PFAM: glycosyl transferase family 2; KEGG: chu:CHU_2681 candidate b-glycosyltransferase, glycosyltransferase family 2 protein YP_001995507.1 TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: plt:Plut_1289 lactoylglutathione lyase YP_001995508.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001995509.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cph:Cpha266_0391 FolC bifunctional protein YP_001995510.1 KEGG: cph:Cpha266_0390 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: helix-hairpin-helix motif; RuvA domain protein; DNA recombination protein RuvA domain I; SMART: Helix-hairpin-helix DNA-binding class 1 YP_001995511.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001995512.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001995513.1 KEGG: hsa:4130 microtubule-associated protein 1A YP_001995514.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hau:Haur_5149 tetratricopeptide TPR_2 repeat protein YP_001995515.1 KEGG: mba:Mbar_A3708 hypothetical protein YP_001995516.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001995518.1 KEGG: afu:AF1103 hypothetical protein YP_001995520.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sru:SRU_2784 NADH dehydrogenase I, H subunit YP_001995521.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: dde:Dde_2814 methyl-accepting chemotaxis sensory transducer YP_001995522.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: ana:all2875 two-component hybrid sensor and regulator YP_001995523.1 KEGG: cch:Cag_0034 hypothetical protein YP_001995524.1 KEGG: plt:Plut_0014 peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001995525.1 KEGG: bmu:Bmul_0728 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_001995526.1 PFAM: TPR repeat-containing protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_2811 tetratricopeptide TPR_2 YP_001995527.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mma:MM_3104 hypothetical protein YP_001995528.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; NmrA family protein; KEGG: cte:CT0995 hypothetical protein YP_001995529.1 KEGG: gtn:GTNG_2243 pyrimidine nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like YP_001995530.1 KEGG: smd:Smed_1144 type II citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_001995531.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: cte:CT1689 excinuclease ABC, subunit A YP_001995533.1 KEGG: sru:SRU_2191 cytochrome c-type biogenesis protein CcmE YP_001995534.1 PFAM: cytochrome c assembly protein; KEGG: sru:SRU_2143 cytochrome c biogenesis factor YP_001995535.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: cph:Cpha266_0383 DNA protecting protein DprA YP_001995536.1 PFAM: Rhodanese domain protein; KEGG: cph:Cpha266_1575 rhodanese domain protein YP_001995537.1 PFAM: NUDIX hydrolase; KEGG: lsp:Bsph_2426 MutT/NUDIX family protein YP_001995538.1 PFAM: permease YjgP/YjgQ family protein; KEGG: cph:Cpha266_0940 permease YjgP/YjgQ family protein YP_001995539.1 PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_1677 NUDIX hydrolase YP_001995540.1 KEGG: mmi:MMAR_4424 conserved hypothetical secreted protein YP_001995541.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: plt:Plut_0230 bacterioferritin comigratory protein, thiol peroxidase YP_001995542.1 KEGG: cbs:COXBURSA331_A0661 tetratricopeptide repeat protein/methyltransferase YP_001995543.1 PFAM: UbiA prenyltransferase; KEGG: sye:Syncc9902_1573 bacteriochlorophyll/chlorophyll a synthase YP_001995544.1 TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cte:CT2014 bacteriochlorophyll synthase, 23 kDa subunit YP_001995545.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: rca:Rcas_1543 PucC protein YP_001995546.1 KEGG: cte:CT1409 hypothetical protein YP_001995547.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: bld:BLi02379 BirA YP_001995548.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_001995549.1 KEGG: cch:Cag_1410 isocitrate dehydrogenase NADP-dependent, monomeric type; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type YP_001995550.1 KEGG: cch:Cag_1411 enoyl-(acyl-carrier protein) reductase (NADH) YP_001995551.1 KEGG: dsy:DSY2837 regulatory protein YP_001995552.1 KEGG: plt:Plut_0457 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001995553.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: eba:ebD102 hypothetical protein YP_001995554.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: aeh:Mlg_1787 prevent-host-death family protein YP_001995555.1 KEGG: cte:CT0346 leucyl/phenylalanyl-tRNA-protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase YP_001995556.1 KEGG: sru:SRU_1812 hypothetical protein YP_001995557.1 KEGG: cph:Cpha266_0701 translation initiation factor 2B subunit I family (IF-2BI); TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_001995558.1 PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1665 outer membrane efflux protein YP_001995559.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ote:Oter_1637 efflux transporter, RND family, MFP subunit YP_001995560.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: cph:Cpha266_0032 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit YP_001995561.1 PFAM: cytochrome c class I; KEGG: pvi:Cvib_0008 sulfide dehydrogenase (flavocytochrome), cytochrome c subunit YP_001995562.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: cph:Cpha266_0030 sulfur oxidation protein SoxZ YP_001995563.1 KEGG: cte:CT1017 sulfur oxidation protein SoxY YP_001995564.1 KEGG: dsy:DSY4470 hypothetical protein YP_001995565.1 TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: nca:Noca_3037 DsrC family protein YP_001995566.1 KEGG: dde:Dde_0222 hypothetical protein YP_001995567.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsy:DSY4468 hypothetical protein YP_001995568.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001995569.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001995570.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cph:Cpha266_2511 single-strand binding protein YP_001995571.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001995572.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA0168 ABC transporter, ATP-binding protein YP_001995574.1 KEGG: aba:Acid345_4513 hypothetical protein YP_001995575.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sat:SYN_00568 signal transduction histidine kinase with reciever domain protein YP_001995576.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_001995577.1 PFAM: aminotransferase class I and II; KEGG: tko:TK1094 alanine aminotransferase YP_001995578.1 PFAM: DivIVA family protein; KEGG: dsy:DSY2884 hypothetical protein YP_001995579.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sfu:Sfum_3082 membrane protein involved in aromatic hydrocarbon degradation YP_001995581.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: chu:CHU_3371 membrane-associated phospholipid phosphatase YP_001995582.1 PFAM: glycosyl transferase family 39; KEGG: nis:NIS_1418 glycosyl transferase YP_001995583.1 PFAM: TENA/THI-4 domain protein; KEGG: bth:BT_3146 hypothetical protein YP_001995584.1 KEGG: bth:BT_3145 hypothetical protein YP_001995585.1 PFAM: peptidase M20; peptidase M28; KEGG: chu:CHU_1020 possible aminopeptidase YP_001995586.1 PFAM: sodium:dicarboxylate symporter; KEGG: noc:Noc_1770 sodium/dicarboxylate symporter YP_001995587.1 KEGG: ppd:Ppro_2216 hypothetical protein YP_001995588.1 KEGG: dme:Dmel_CG9757 CG9757 YP_001995590.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: chu:CHU_1085 3-oxoacyl-[acyl-carrier-protein] reductase YP_001995591.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cph:Cpha266_2491 [acyl-carrier-protein] S-malonyltransferase YP_001995592.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001995593.1 TIGRFAM: small GTP-binding protein; PFAM: protein of unknown function ATP binding; Miro domain protein; KEGG: rca:Rcas_1730 small GTP-binding protein YP_001995595.1 KEGG: mgm:Mmc1_0543 methyl-accepting chemotaxis sensory transducer YP_001995596.1 PFAM: Roadblock/LC7 family protein; KEGG: noc:Noc_1488 roadblock/LC7 YP_001995598.1 KEGG: mms:mma_0576 hypothetical protein YP_001995599.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pvi:Cvib_0233 phosphotransferase system, phosphocarrier protein HPr YP_001995600.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001995601.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001995602.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: sat:SYN_03523 pyruvate formate-lyase activating enzyme YP_001995603.1 PFAM: Alkaline phosphatase; KEGG: cph:Cpha266_2693 alkaline phosphatase YP_001995604.1 KEGG: gur:Gura_2373 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001995605.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001995606.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001995607.1 KEGG: mba:Mbar_A2449 hypothetical protein YP_001995608.1 PFAM: Miro domain protein; KEGG: mba:Mbar_A2306 leucine-rich-repeat protein YP_001995609.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: mxa:MXAN_6181 ammonium transporter YP_001995610.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: sru:SRU_2170 ATPase family associated with various cellular activities (AAA) YP_001995611.1 PFAM: Pathogenesis-related transcriptional factor and ERF protein; KEGG: hau:Haur_2364 hypothetical protein YP_001995612.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001995614.1 KEGG: hmo:HM1_1053 hypothetical protein YP_001995615.1 PFAM: inner-membrane translocator; KEGG: cph:Cpha266_0519 inner-membrane translocator YP_001995617.1 PFAM: peptidase S14 ClpP; KEGG: cte:CT1553 ATP-dependent Clp protease, proteolytic subunit ClpP YP_001995618.1 KEGG: cau:Caur_0238 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001995619.1 PFAM: protein of unknown function DUF472; KEGG: plt:Plut_0935 hypothetical protein YP_001995620.1 PFAM: histone family protein DNA-binding protein; KEGG: cte:CT0160 DNA-binding protein HU-beta YP_001995621.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001995622.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cte:CT0158 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001995623.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: cte:CT0157 acetyl-CoA carboxylase, biotin carboxylase YP_001995624.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001995625.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cph:Cpha266_1887 apolipoprotein N-acyltransferase YP_001995626.1 PFAM: bacteriochlorophyll A protein; KEGG: plt:Plut_1500 bacteriochlorophyll A protein YP_001995627.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: mar:MAE_29110 ferredoxin-dependent glutamate synthase YP_001995628.1 PFAM: pentapeptide repeat protein; KEGG: pmu:PM0591 hypothetical YP_001995629.1 KEGG: cte:CT1418 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_001995630.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pvi:Cvib_1179 cold-shock DNA-binding protein family YP_001995631.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: aoe:Clos_0400 protein of unknown function DUF6 transmembrane YP_001995632.1 PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; thiamineS protein; MoeZ/MoeB domain protein; KEGG: cau:Caur_3492 UBA/ThiF-type NAD/FAD binding protein YP_001995633.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: cff:CFF8240_1498 hypothetical protein YP_001995634.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cte:CT1635 site-specific recombinase, phage/XerD family YP_001995635.1 KEGG: pvi:Cvib_1413 hypothetical protein YP_001995636.1 PFAM: protein of unknown function UPF0016; KEGG: noc:Noc_1343 hypothetical protein YP_001995637.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001995638.1 PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer YP_001995639.1 KEGG: mar:MAE_04340 hypothetical protein YP_001995640.1 KEGG: cnb:CNBF1520 hypothetical protein YP_001995641.1 PFAM: conserved hypothetical protein; KEGG: plt:Plut_0094 hypothetical protein YP_001995642.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: cte:CT0136 segregation and condensation protein A YP_001995643.1 PFAM: response regulator receiver; KEGG: par:Psyc_0720 probable response regulator receiver, fis type YP_001995644.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pcr:Pcryo_2287 histidine kinase YP_001995645.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; domain of unknown function DUF1731; KEGG: cph:Cpha266_2675 domain of unknown function DUF1731 YP_001995646.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: cch:Cag_0145 DNA mismatch repair protein YP_001995647.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: aoe:Clos_1079 two component, sigma54 specific, transcriptional regulator, Fis family YP_001995648.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: fjo:Fjoh_1334 methylated-DNA--protein-cysteine methyltransferase YP_001995649.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cak:Caul_1924 short-chain dehydrogenase/reductase SDR YP_001995650.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: cch:Cag_1783 dihydroorotate dehydrogenase 1 YP_001995651.1 KEGG: gvi:glr3013 hypothetical protein YP_001995652.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mpt:Mpe_A1221 peroxiredoxin-like protein YP_001995653.1 KEGG: sru:SRU_1394 hypothetical protein YP_001995654.1 KEGG: aba:Acid345_1042 hypothetical protein YP_001995655.1 PFAM: UspA domain protein; KEGG: fjo:Fjoh_1627 UspA domain protein YP_001995656.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_001995657.1 KEGG: lbi:LEPBI_I1605 conserved hypothetical protein; signal peptide YP_001995658.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_001995659.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cte:CT1628 pyruvate flavodoxin/ferrodoxin oxidoreductase YP_001995660.1 KEGG: tel:tll1282 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; SMART: PAC repeat-containing protein YP_001995661.1 PFAM: Radical SAM domain protein; KEGG: cph:Cpha266_1913 hypothetical protein YP_001995663.1 PFAM: AAA-4 family protein; KEGG: cph:Cpha266_1740 transcriptional regulator YP_001995664.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: drm:Dred_0778 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001995665.1 PFAM: cytochrome c class I; KEGG: cph:Cpha266_2463 cytochrome c, class I YP_001995666.1 KEGG: ajs:Ajs_2450 hypothetical protein YP_001995667.1 PFAM: peptidase M50; KEGG: cte:CT1705 zinc protease YP_001995668.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: mar:MAE_03610 tetratricopeptide repeat protein YP_001995670.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_001995671.1 KEGG: cte:CT0312 DnaK suppressor protein YP_001995672.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: plt:Plut_0425 amidophosphoribosyl transferase YP_001995674.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pdi:BDI_0183 hemolysin YP_001995675.1 PFAM: protein of unknown function DUF214; KEGG: cte:CT0315 cell division protein YP_001995677.1 KEGG: fno:Fnod_0012 hypothetical protein YP_001995678.1 KEGG: mac:MA0960 hypothetical protein YP_001995679.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: fjo:Fjoh_1644 domain of unknown function DUF1730 YP_001995680.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001995681.1 PFAM: heat shock protein DnaJ domain protein; WD-40 repeat protein; KEGG: ana:all0438 serine/threonine kinase with WD-40 repeat YP_001995683.1 KEGG: cte:CT1366 hypothetical protein YP_001995684.1 PFAM: beta-lactamase domain protein; KEGG: pdi:BDI_1147 hydrolase YP_001995685.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001995686.1 PFAM: glycoside hydrolase family 57; KEGG: amr:AM1_3532 glycoside hydrolase, family 57 YP_001995687.1 PFAM: protein of unknown function DUF456; KEGG: pca:Pcar_2062 hypothetical protein YP_001995688.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: cph:Cpha266_1597 GTPase EngC YP_001995689.1 KEGG: pvi:Cvib_0288 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001995690.1 KEGG: plt:Plut_0223 hypothetical protein YP_001995691.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_001995692.1 PFAM: ROK family protein; KEGG: pvi:Cvib_0291 ROK family protein YP_001995693.1 KEGG: hac:Hac_1296 restriction endonuclease YP_001995694.1 KEGG: hac:Hac_1297 site specific DNA-methyltransferase YP_001995695.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_1989 transcriptional regulator, AraC family YP_001995696.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ade:Adeh_3217 short-chain dehydrogenase/reductase SDR YP_001995697.1 KEGG: gfo:GFO_2891 conserved hypothetical protein, secreted YP_001995698.1 PFAM: Rhomboid family protein; KEGG: plt:Plut_2124 hypothetical protein YP_001995699.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001995700.1 KEGG: chu:CHU_3265 hypothetical protein YP_001995701.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: sru:SRU_0493 predicted membrane-bound metal-dependent hydrolase (DUF457) family YP_001995702.1 KEGG: ava:Ava_3043 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001995703.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cac:CAC0183 transcriptional regulators of NagC/XylR (ROK) family, sugar kinase YP_001995704.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cac:CAC3392 NADH-dependent butanol dehydrogenase YP_001995705.1 PFAM: aldo/keto reductase; KEGG: rpc:RPC_4894 aldo/keto reductase YP_001995706.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_1839 helix-turn-helix-domain containing protein, AraC type YP_001995707.1 KEGG: cph:Cpha266_2554 hypothetical protein YP_001995708.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ppd:Ppro_2450 UDP-N-acetylglucosamine 2-epimerase YP_001995709.1 KEGG: plt:Plut_0847 conserved hypothetical protein; conserved domain YP_001995710.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: cph:Cpha266_0559 phosphoenolpyruvate carboxylase YP_001995711.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: cte:CT0929 cobyrinic acid a,c-diamide synthase YP_001995712.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: cte:CT1929 TIM-barrel protein, NifR3 family YP_001995713.1 PFAM: extracellular solute-binding protein family 5; KEGG: chu:CHU_3498 oligopeptide ABC transporter, solute-binding protein YP_001995714.1 KEGG: cpf:CPF_1618 OB-fold nucleic acid binding domain protein YP_001995715.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_0135 hypothetical protein YP_001995716.1 PFAM: histidine triad (HIT) protein; KEGG: cph:Cpha266_0105 histidine triad (HIT) protein YP_001995717.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_1156 diguanylate cyclase with PAS/PAC sensor YP_001995718.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: pvi:Cvib_1438 ribulose-5-phosphate 3-epimerase YP_001995719.1 KEGG: sru:SRU_1729 hypothetical protein YP_001995720.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: tde:TDE0233 fic family protein YP_001995721.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001995722.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001995723.1 TIGRFAM: phosphoheptose isomerase; KEGG: cph:Cpha266_2549 phosphoheptose isomerase YP_001995724.1 KEGG: tle:Tlet_1303 AAA ATPase YP_001995725.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: art:Arth_3131 geranylgeranyl reductase YP_001995726.1 KEGG: cph:Cpha266_2315 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001995728.1 PFAM: WD-40 repeat protein; KEGG: cch:Cag_0213 WD-40 repeat YP_001995730.1 PFAM: metallophosphoesterase; KEGG: cph:Cpha266_0685 metallophosphoesterase YP_001995731.1 KEGG: dol:Dole_1339 PAS sensor protein YP_001995732.1 TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197; KEGG: cte:CT2125 chlorophyllide reductase, BchZ subunit YP_001995733.1 KEGG: cch:Cag_1554 hypothetical protein YP_001995734.1 KEGG: cph:Cpha266_0910 hypothetical protein YP_001995735.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sru:SRU_2671 ABC transporter, ATP-binding protein YP_001995736.1 PFAM: aminodeoxychorismate lyase; KEGG: cte:CT2223 hypothetical protein YP_001995737.1 PFAM: Chorismate mutase; KEGG: cch:Cag_0046 chorismate mutase YP_001995738.1 KEGG: bcz:BCZK2458 hydrolase, haloacid dehalogenase-like family YP_001995739.1 KEGG: cte:CT2225 hypothetical protein YP_001995740.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: cch:Cag_0047 methyltransferase YP_001995741.1 KEGG: pvi:Cvib_1760 hypothetical protein YP_001995742.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: cte:CT0040 penicillin-binding protein 3 YP_001995743.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cte:CT0039 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001995744.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: plt:Plut_2114 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D -alanyl ligase YP_001995745.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001995746.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cph:Cpha266_2723 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_001995747.1 PFAM: cell cycle protein; KEGG: cte:CT0035 cell division protein, FtsW/RodA/SpoVE family YP_001995748.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001995749.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001995750.1 KEGG: tde:TDE1829 hypothetical protein YP_001995751.1 KEGG: drm:Dred_0677 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_001995752.1 KEGG: cch:Cag_0057 FtsQ protein YP_001995753.1 PFAM: cell division protein FtsA; KEGG: cte:CT0031 cell division protein FtsA YP_001995754.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_001995755.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: aba:Acid345_3976 major facilitator superfamily (MFS) transporter YP_001995756.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: fjo:Fjoh_1583 transcriptional regulator, Crp/Fnr family YP_001995757.1 KEGG: cte:CT0001 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain YP_001995758.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: cph:Cpha266_0003 DNA replication and repair protein RecF YP_001995759.1 KEGG: cch:Cag_2009 hypothetical protein YP_001995760.1 KEGG: sru:SRU_2713 cadherin domain protein YP_001995761.1 SMART: helix-turn-helix domain protein; KEGG: vei:Veis_4706 helix-turn-helix domain protein YP_001995762.1 PFAM: protein of unknown function DUF1044; KEGG: pla:Plav_3645 protein of unknown function DUF1044 YP_001995763.1 KEGG: mma:MM_2843 hypothetical protein YP_001995764.1 MDM; functions in conversion of succinate to propionate YP_001995765.1 PFAM: methylmalonyl-CoA mutase; KEGG: pdi:BDI_2303 methylmalonyl-CoA mutase, small subunit YP_001995766.1 PFAM: phosphatidylglycerophosphatase A; KEGG: cph:Cpha266_0670 phosphatidylglycerophosphatase YP_001995767.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cph:Cpha266_0669 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001995768.1 KEGG: cph:Cpha266_0668 Smr protein/MutS2; TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein YP_001995769.1 PFAM: UspA domain protein; KEGG: sru:SRU_1737 universal stress protein family YP_001995770.1 KEGG: chu:CHU_2232 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001995771.1 KEGG: mac:MA2906 hypothetical protein YP_001995772.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001995774.1 PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B; KEGG: cte:CT2284 DNA polymerase family B protein YP_001995777.1 KEGG: syf:Synpcc7942_1209 hypothetical protein YP_001995778.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_001995779.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: cte:CT1331 molybdopterin biosynthesis protein MoeA YP_001995780.1 PFAM: MscS Mechanosensitive ion channel; KEGG: amt:Amet_2155 MscS mechanosensitive ion channel YP_001995781.1 PFAM: protein of unknown function DUF1232; KEGG: cte:CT2220 hypothetical protein YP_001995782.1 PFAM: regulatory protein TetR; KEGG: chu:CHU_2516 transcriptional regulator, TetR family YP_001995783.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_001995784.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001995785.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rpd:RPD_4375 ATP-binding region, ATPase-like YP_001995786.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_2811 tetratricopeptide TPR_2 YP_001995787.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_001995788.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001995789.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit YP_001995790.1 KEGG: cte:CT1333 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001995791.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: cch:Cag_0951 hypothetical protein YP_001995794.1 PFAM: Nucleotidyl transferase; KEGG: bth:BT_1633 mannose-1-phosphate guanyltransferase YP_001995795.1 PFAM: conserved hypothetical protein; KEGG: aba:Acid345_3937 hypothetical protein YP_001995796.1 KEGG: noc:Noc_1773 hypothetical protein YP_001995797.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: rrs:RoseRS_1081 glycogen/starch synthase, ADP-glucose type YP_001995798.1 KEGG: cph:Cpha266_1560 hypothetical protein YP_001995799.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1561 HI0933 family protein YP_001995800.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001995801.1 PFAM: Heat shock protein 70; KEGG: aba:Acid345_0480 heat shock protein 70 YP_001995802.1 KEGG: ret:RHE_PA00007 hypothetical protein YP_001995803.1 KEGG: eba:p1B331 hypothetical protein YP_001995804.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: bfr:BF1390 tyrosine type site-specific recombinase YP_001995805.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001995806.1 SMART: Rhodanese domain protein; KEGG: ppd:Ppro_1937 rhodanese domain protein YP_001995807.1 PFAM: peptidase S24 and S26 domain protein; KEGG: pvi:Cvib_0894 prophage repressor YP_001995808.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bch:Bcen2424_5938 periplasmic sensor signal transduction histidine kinase YP_001995809.1 PFAM: response regulator receiver; KEGG: par:Psyc_0720 probable response regulator receiver, fis type YP_001995810.1 PFAM: phosphate-selective porin O and P; KEGG: pdi:BDI_2593 hypothetical protein YP_001995811.1 KEGG: dar:Daro_0424 PAS:GGDEF YP_001995812.1 PFAM: major facilitator superfamily MFS_1; KEGG: drm:Dred_0326 drug resistance transporter, EmrB/QacA subfamily YP_001995813.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: smu:SMU.606 hypothetical protein YP_001995814.1 PFAM: Domain of unknown function DUF1863; KEGG: mgm:Mmc1_3118 hypothetical protein YP_001995815.1 KEGG: cth:Cthe_1513 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_001995816.1 KEGG: lpn:lpg2074 4-diphosphocytidyl-2-methyl-D-erithritol synthase YP_001995817.1 KEGG: cch:Cag_1569 hypothetical protein YP_001995818.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mma:MM_1180 oxidoreductase YP_001995819.1 PFAM: glycoside hydrolase family 38; glycoside hydrolase family 57; Domain of unknown function DUF1925; Domain of unknown function DUF1926; KEGG: rba:RB2160 alpha-amylase YP_001995820.1 KEGG: csc:Csac_1174 YD repeat protein YP_001995821.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: cph:Cpha266_2570 Holliday junction resolvase YqgF YP_001995822.1 PFAM: histone family protein DNA-binding protein; KEGG: sru:SRU_1063 probable DNA-binding protein HU YP_001995823.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cch:Cag_1454 glutathione S-transferase, fosfomycin resistance protein YP_001995824.1 KEGG: cte:CT0248 hypothetical protein YP_001995825.1 Essential for recycling GMP and indirectly, cGMP YP_001995826.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: cch:Cag_1457 hypothetical protein YP_001995827.1 KEGG: cph:Cpha266_0957 hypothetical protein YP_001995829.1 TIGRFAM: phosphate binding protein; KEGG: sfu:Sfum_0705 phosphate binding protein YP_001995830.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hmo:HM1_2083 phosphate ABC transporter, permease protein PstC YP_001995831.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hmo:HM1_2084 phosphate ABC transporter, permease protein PstA YP_001995832.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_2116 phosphate ABC transporter, ATP-binding protein PstB YP_001995833.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mja:MJ1012 phosphate specific transport complex component (PstB) YP_001995835.1 KEGG: kpn:KPN_02488 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_001995836.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_001995838.1 KEGG: mxa:MXAN_1070 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C YP_001995840.1 PFAM: ferredoxin; KEGG: bba:Bd0372 hypothetical protein YP_001995841.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: ote:Oter_1448 cytochrome bd ubiquinol oxidase subunit I YP_001995842.1 KEGG: afw:Anae109_1656 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II YP_001995843.1 KEGG: tme:Tmel_1501 von Willebrand factor, type A YP_001995844.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001995845.1 KEGG: sru:SRU_1850 tetratricopeptide repeat domain protein YP_001995846.1 KEGG: cph:Cpha266_0323 hypothetical protein YP_001995847.1 TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: cyb:CYB_2267 flavodoxin FldA YP_001995848.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_1215 ferredoxin, 4Fe-4S YP_001995849.1 KEGG: cph:Cpha266_0315 hypothetical protein YP_001995850.1 PFAM: regulatory protein MarR; iron dependent repressor; FeoA family protein; KEGG: cte:CT1737 iron-dependent repressor YP_001995851.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1980 glycosyl transferase, family 2 YP_001995852.1 PFAM: glycoside hydrolase family 57; KEGG: sfu:Sfum_2350 glycoside hydrolase, family 57 YP_001995853.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: protein of unknown function DUF324; KEGG: tpd:Teth39_1602 CRISPR-associated RAMP protein, Cmr1 family YP_001995854.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; KEGG: tte:TTE2631 hypothetical protein YP_001995855.1 TIGRFAM: CRISPR-associated protein, Cmr5 family; PFAM: CRISPR-associated protein TM1791.1; KEGG: aae:aq_384 hypothetical protein YP_001995856.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: pfu:PF1126 hypothetical protein YP_001995857.1 KEGG: tme:Tmel_1656 CRISPR-associated protein, APE2256 family YP_001995858.1 TIGRFAM: CRISPR-associated protein, Cmr3 family; PFAM: CRISPR-associated protein TM1793; KEGG: rxy:Rxyl_0262 hypothetical protein YP_001995859.1 TIGRFAM: CRISPR-associated protein, Crm2 family; KEGG: pth:PTH_1928 predicted hydrolase YP_001995860.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cte:CT1510 carbon-nitrogen hydrolase family protein YP_001995861.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_001995862.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: cph:Cpha266_1905 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001995863.1 KEGG: cph:Cpha266_1906 hypothetical protein YP_001995864.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cph:Cpha266_0443 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase YP_001995865.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cph:Cpha266_0444 TonB-dependent receptor YP_001995866.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: cph:Cpha266_0445 transport system permease protein YP_001995867.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0446 ABC transporter related YP_001995868.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0447 methyltransferase type 11 YP_001995869.1 PFAM: periplasmic binding protein; KEGG: cph:Cpha266_0448 periplasmic binding protein YP_001995870.1 KEGG: cte:CT1757 hypothetical protein YP_001995871.1 PFAM: cobalamin synthesis protein P47K; KEGG: cte:CT1756 hypothetical protein YP_001995872.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1755 ABC transporter, ATP-binding protein YP_001995873.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: lbi:LEPBI_I1139 hypothetical protein YP_001995874.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001995876.1 PFAM: protein of unknown function DUF140; KEGG: gsu:GSU1900 transporter YP_001995878.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: plt:Plut_0443 phosphoesterase PHP-like YP_001995879.1 KEGG: ppw:PputW619_3594 hypothetical protein YP_001995880.1 PFAM: Rhomboid family protein; KEGG: prw:PsycPRwf_0312 rhomboid family protein YP_001995881.1 KEGG: art:Arth_3964 hypothetical protein YP_001995882.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cch:Cag_0693 sepiapterin reductase YP_001995883.1 KEGG: cph:Cpha266_1881 hypothetical protein YP_001995884.1 PFAM: BioY protein; KEGG: pfu:PF1677 hypothetical protein YP_001995885.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: sru:SRU_1318 iron-sulfur cluster assembly accessory protein YP_001995886.1 TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rrs:RoseRS_1811 phytoene dehydrogenase-related protein YP_001995887.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cte:CT0879 tRNA methyltransferase SpoU YP_001995888.1 PFAM: aldo/keto reductase; KEGG: gvi:gll3460 probable oxidoreductase YP_001995889.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cte:CT1497 sigma-54-dependent transcriptional regulator YP_001995890.1 TIGRFAM: conserved hypothetical membrane protein; PFAM: protein of unknown function DUF1550; KEGG: sru:SRU_2413 protein of unknown function (DUF1550) family YP_001995891.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dar:Daro_0191 GCN5-related N-acetyltransferase YP_001995892.1 PFAM: NLP/P60 protein; KEGG: ent:Ent638_2771 NLP/P60 protein YP_001995893.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pdi:BDI_3708 vitamin B12 receptor precursor YP_001995895.1 KEGG: chu:CHU_0775 membrane protease (metal dependent; CAAX family) YP_001995896.1 KEGG: bfs:BF0577 conserved hypothetical lipoprotein YP_001995897.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bfr:BF0628 TonB-linked outer membrane receptor YP_001995898.1 KEGG: bfs:BF0577 conserved hypothetical lipoprotein YP_001995899.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bfr:BF0628 TonB-linked outer membrane receptor YP_001995900.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_3754 transcriptional regulator, AraC family YP_001995901.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_3754 transcriptional regulator, AraC family YP_001995902.1 KEGG: mtp:Mthe_1282 Cna B domain protein YP_001995903.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: vpa:VPA0882 heme transport protein HutA YP_001995904.1 KEGG: abu:Abu_0326 hypothetical protein YP_001995905.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mrd:Mrad2831_4009 protein of unknown function DUF6 transmembrane YP_001995906.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: msi:Msm_0028 SAM-dependent methyltransferase YP_001995907.1 KEGG: mem:Memar_0030 methyltransferase type 12 YP_001995909.1 PFAM: O-methyltransferase domain protein; KEGG: bfs:BF2170 polyketide synthesis O-methyltransferase YP_001995910.1 PFAM: ABC transporter transmembrane region; SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: bth:BT_0509 ABC transporter ATP-binding/transmembrane protein YP_001995911.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bth:BT_0508 ABC transporter ATP-binding protein YP_001995912.1 KEGG: bfs:BF0577 conserved hypothetical lipoprotein YP_001995913.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bfr:BF0628 TonB-linked outer membrane receptor YP_001995914.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: fps:FP0850 probable transcriptional regulator, AraC family YP_001995915.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pdi:BDI_1069 transport-related exported protein YP_001995916.1 PFAM: PepSY-associated TM helix domain protein; KEGG: pdi:BDI_1068 hypothetical protein YP_001995917.1 KEGG: bth:BT_3628 hypothetical protein YP_001995918.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mac:MA3471 hypothetical protein YP_001995919.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bfr:BF1117 TonB-dependent outer membrane receptor protein YP_001995920.1 KEGG: bfs:BF1028 conserved hypothetical lipoprotein YP_001995921.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shl:Shal_0075 GCN5-related N-acetyltransferase YP_001995924.1 PFAM: protein of unknown function DUF262; KEGG: pdi:BDI_2151 hypothetical protein YP_001995926.1 KEGG: tet:TTHERM_00732540 hypothetical protein Pfam: TPR_2 TPR_1 EpoR_lig-bind VAR1 Vicilin_N SKG6 PROSITE: ASN_RICH GLN_RICH TPR YP_001995927.1 KEGG: bth:BT_2452 hypothetical protein YP_001995928.1 KEGG: chu:CHU_1300 hypothetical protein YP_001995929.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pca:Pcar_0172 catalytic LigB subunit of aromatic ring-opening dioxygenase YP_001995930.1 KEGG: pdi:BDI_2199 hypothetical protein YP_001995931.1 KEGG: cph:Cpha266_2645 hypothetical protein YP_001995932.1 KEGG: cph:Cpha266_2644 hypothetical protein YP_001995933.1 TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: cph:Cpha266_0257 integron integrase YP_001995934.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: cvi:CV_1210 hypothetical protein YP_001995935.1 PFAM: GTP-binding protein HSR1-related; KEGG: ypi:YpsIP31758_0759 GTPase YP_001995936.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: dol:Dole_1697 transcriptional regulator, AbrB family YP_001995937.1 PFAM: PilT protein domain protein; KEGG: dol:Dole_1698 PilT protein domain protein YP_001995938.1 KEGG: cph:Cpha266_0736 ferredoxin, 2Fe-2S YP_001995939.1 KEGG: cte:CT1540 NifB protein; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001995940.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: cph:Cpha266_0738 nitrogenase YP_001995941.1 KEGG: cte:CT1538 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1 YP_001995942.1 KEGG: pvi:Cvib_1347 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001995943.1 KEGG: cte:CT1536 nitrogenase molybdenum-iron protein, alpha subunit; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001995944.1 PFAM: nitrogen regulatory protein P-II; KEGG: cte:CT1535 nitrogen regulatory protein, P-II family YP_001995945.1 PFAM: nitrogen regulatory protein P-II; KEGG: pvi:Cvib_1344 nitrogen regulatory protein P-II YP_001995946.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex YP_001995948.1 KEGG: lic:LIC11977 cyclic nucleotide binding protein YP_001995949.1 KEGG: plt:Plut_0290 acetyltransferase, CysE/LacA/LpxA/NodL family YP_001995950.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1901 ABC transporter, ATP-binding protein YP_001995951.1 KEGG: rru:Rru_A2640 hypothetical protein YP_001995952.1 PFAM: glycosyl transferase family 2; KEGG: ava:Ava_1385 glycosyl transferase, family 2 YP_001995953.1 PFAM: glycosyl transferase family 2; KEGG: ana:all4431 glycosyl transferase YP_001995954.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: cch:Cag_0009 peptidase M50, membrane-associated zinc metallopeptidase YP_001995955.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001995956.1 KEGG: sru:SRU_1345 hypothetical protein YP_001995957.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SH3 type 3 domain protein; KEGG: sdn:Sden_1697 N-acetylmuramoyl-L-alanine amidase, family 2 YP_001995958.1 KEGG: sdn:Sden_1696 hypothetical protein YP_001995959.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001995960.1 KEGG: cco:CCC13826_1259 flagellar protein YP_001995961.1 PFAM: AMP-dependent synthetase and ligase; Enoyl-CoA hydratase/isomerase; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rrs:RoseRS_3202 AMP-dependent synthetase and ligase YP_001995962.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: tpd:Teth39_2267 transcriptional regulator, Crp/Fnr family YP_001995963.1 PFAM: trigger factor domain protein; trigger factor domain; KEGG: cte:CT1934 trigger factor YP_001995964.1 KEGG: chu:CHU_1567 hypothetical protein YP_001995965.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: DNA methylase N-4/N-6 domain protein; KEGG: mae:Maeo_0192 DNA methylase N-4/N-6 domain protein YP_001995966.1 PFAM: peptidase M48 Ste24p; KEGG: plt:Plut_1513 STE24 endopeptidase YP_001995967.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: cte:CT1508 hypothetical protein YP_001995968.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_001995969.1 KEGG: spu:765567 hypothetical protein LOC765567 YP_001995971.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: drm:Dred_1305 acetaldehyde dehydrogenase (acetylating) YP_001995973.1 TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: cno:NT01CX_0543 ribose-5-phosphate isomerase B YP_001995974.1 PFAM: Exonuclease VII small subunit; KEGG: cph:Cpha266_2446 exodeoxyribonuclease VII small subunit YP_001995975.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001995976.1 PFAM: Sporulation domain protein; KEGG: pvi:Cvib_1322 sporulation domain protein YP_001995977.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pvi:Cvib_1125 sodium/hydrogen exchanger YP_001995978.1 TIGRFAM: hemerythrin-like metal-binding protein; KEGG: gsu:GSU2929 hypothetical protein YP_001995979.1 KEGG: sru:SRU_p0027 BseRI endonuclease YP_001995980.1 PFAM: protein of unknown function DUF454; KEGG: lic:LIC10304 hypothetical protein YP_001995981.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: cph:Cpha266_2547 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001995982.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pin:Ping_2901 L-2-haloalkanoic acid dehalogenase, HAD superfamily protein YP_001995983.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_001995984.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: cte:CT0478 segregation and condensation protein B YP_001995985.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cch:Cag_0542 pseudouridine synthase, Rsu YP_001995986.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mba:Mbar_A2604 TPR repeat YP_001995987.1 KEGG: aba:Acid345_4495 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C YP_001995988.1 PFAM: methyltransferase; Methyltransferase type 11; KEGG: rxy:Rxyl_2026 hypothetical protein YP_001995989.1 KEGG: cte:CT1649 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein YP_001995990.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: cte:CT0204 phosphoenolpyruvate-protein phosphotransferase YP_001995991.1 KEGG: mxa:MXAN_5564 hypothetical protein YP_001995992.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cno:NT01CX_1509 integral membrane protein with CBS domains YP_001995993.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cte:CT1947 single-strand binding protein YP_001995994.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001995995.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001995996.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001995997.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001995998.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001995999.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001996000.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001996001.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001996002.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001996003.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001996004.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001996005.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001996006.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001996007.1 one of the stabilizing components for the large ribosomal subunit YP_001996008.1 PFAM: ribosomal protein S17; KEGG: plt:Plut_0190 30S ribosomal protein S17 YP_001996009.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001996010.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001996011.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001996012.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_001996013.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001996014.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001996015.1 binds 5S rRNA along with protein L5 and L25 YP_001996016.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001996017.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001996018.1 late assembly protein YP_001996019.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001996020.1 TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1 IF1 family protein; KEGG: plt:Plut_0203 translation initiation factor IF-1 YP_001996021.1 PFAM: ribosomal protein L36; KEGG: fno:Fnod_1114 ribosomal protein L36 YP_001996022.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001996023.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001996024.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001996025.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001996026.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001996027.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sru:SRU_1826 sensor histidine kinase YP_001996028.1 PFAM: KWG Leptospira repeat protein; KEGG: cbk:CLL_A2020 hypothetical protein YP_001996029.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001996030.1 KEGG: plt:Plut_1945 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001996031.1 PFAM: alpha/beta hydrolase fold; KEGG: plt:Plut_1944 proline iminopeptidase YP_001996032.1 PFAM: penicillin-binding protein transpeptidase; KEGG: cph:Cpha266_1596 beta-lactamase YP_001996033.1 PFAM: UbiE/COQ5 methyltransferase; D-alanine--D-alanine ligase domain protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: tpt:Tpet_0358 methyltransferase type 11 YP_001996034.1 PFAM: protein of unknown function DUF486; KEGG: mmw:Mmwyl1_2937 protein of unknown function DUF486 YP_001996035.1 KEGG: fps:FP0961 hypothetical protein YP_001996037.1 PFAM: UvrD/REP helicase; KEGG: sru:SRU_0513 ATP-dependent DNA helicase YP_001996040.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001996041.1 PFAM: Prephenate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: cte:CT0084 prephenate dehydrogenase YP_001996042.1 PFAM: ATP-NAD/AcoX kinase; KEGG: plt:Plut_2050 NAD(+) kinase YP_001996044.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bwe:BcerKBAB4_0695 quinone oxidoreductase YhdH/YhfP YP_001996045.1 PFAM: extracellular solute-binding protein family 1; KEGG: lsp:Bsph_0651 iron ABC transporter substrate-binding protein YP_001996046.1 KEGG: sru:SRU_0942 hypothetical protein YP_001996047.1 KEGG: tva:TVAG_238800 Bap-like YP_001996048.1 PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: sru:SRU_0941 hypothetical protein YP_001996049.1 KEGG: hau:Haur_1389 hypothetical protein YP_001996050.1 KEGG: pvi:Cvib_0419 hypothetical protein YP_001996051.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001996052.1 KEGG: cph:Cpha266_2456 hypothetical protein YP_001996053.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001996054.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: cph:Cpha266_2458 protein translocase subunit YajC YP_001996055.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001996056.1 PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: rso:RSc0827 hypothetical protein YP_001996058.1 KEGG: cte:CT1928 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_001996059.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001996060.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: plt:Plut_1459 hydrogenase expression/synthesis, HypA YP_001996061.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cch:Cag_0534 hydrogenase accessory protein HypB YP_001996062.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: cph:Cpha266_0722 (NiFe) hydrogenase maturation protein HypF YP_001996063.1 KEGG: cch:Cag_0333 type II restriction endonuclease TdeIII YP_001996064.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cch:Cag_0332 type II DNA modification methyltransferase M.TdeIII YP_001996065.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001996066.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: plt:Plut_1286 transketolase-like YP_001996067.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: aba:Acid345_1751 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_001996068.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1171 conserved hypothetical protein 103 YP_001996069.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001996070.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1173 zeta-carotene desaturase YP_001996071.1 PFAM: peptidase U32; KEGG: pth:PTH_1069 collagenase and related proteases YP_001996072.1 KEGG: afw:Anae109_2553 ferredoxin-like protein YP_001996073.1 PFAM: Ppx/GppA phosphatase; KEGG: cph:Cpha266_0498 Ppx/GppA phosphatase YP_001996074.1 PFAM: outer membrane efflux protein; KEGG: pvi:Cvib_1116 outer membrane efflux protein YP_001996075.1 PFAM: acriflavin resistance protein; KEGG: plt:Plut_0709 RND family efflux transporter YP_001996076.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: plt:Plut_0708 secretion protein HlyD YP_001996077.1 PFAM: regulatory protein MarR; KEGG: dsy:DSY3432 hypothetical protein YP_001996078.1 KEGG: cph:Cpha266_2164 hypothetical protein YP_001996079.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: pvi:Cvib_0361 tRNA/rRNA methyltransferase (SpoU) YP_001996080.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: rca:Rcas_3701 transcriptional regulator, SARP family YP_001996081.1 PFAM: transcriptional activator domain; KEGG: rca:Rcas_0060 transcriptional activator domain YP_001996082.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ter:Tery_1795 short-chain dehydrogenase/reductase SDR YP_001996083.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_001996084.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: plt:Plut_1967 NusG antitermination factor YP_001996085.1 binds directly to 23S ribosomal RNA YP_001996086.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001996087.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001996088.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001996089.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001996090.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001996091.1 KEGG: tko:TK1873 hypothetical protein YP_001996092.1 PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: aba:Acid345_4276 peptidase M1, membrane alanine aminopeptidase YP_001996093.1 PFAM: hydroxyneurosporene synthase; KEGG: pvi:Cvib_1502 hydroxyneurosporene synthase YP_001996094.1 KEGG: gur:Gura_4044 uncharacterized protein-like protein YP_001996095.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_001996096.1 PFAM: protein of unknown function DUF350; KEGG: mgm:Mmc1_3173 protein of unknown function DUF350 YP_001996097.1 KEGG: sus:Acid_2382 hypothetical protein YP_001996098.1 KEGG: aae:aq_1347 protein YP_001996099.1 PFAM: ferredoxin thioredoxin reductase beta chain; KEGG: ana:alr4065 ferredoxin--thioredoxin reductase catalytic chain YP_001996100.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: cch:Cag_1739 uncharacterized protein involved in tolerance to divalent cations-like YP_001996101.1 KEGG: mta:Moth_1624 redox-active disulfide protein 2 YP_001996102.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cte:CT1725 arsenate reductase YP_001996103.1 PFAM: permease; KEGG: cph:Cpha266_0464 permease YP_001996104.1 KEGG: cph:Cpha266_0462 redox-active disulfide protein 2 YP_001996105.1 PFAM: regulatory protein ArsR; KEGG: dol:Dole_2876 transcriptional regulator, ArsR family YP_001996107.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: chu:CHU_1195 RNA polymerase sigma-24 factor YP_001996108.1 KEGG: cph:Cpha266_1628 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_001996109.1 PFAM: aminotransferase class I and II; KEGG: cte:CT0966 aspartate aminotransferase YP_001996110.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001996111.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase KEGG: cch:Cag_1438 hypothetical protein YP_001996112.1 PFAM: Transketolase domain protein; KEGG: cte:CT0963 transketolase, N-terminal subunit YP_001996113.1 PFAM: protein of unknown function DUF205; KEGG: pub:SAR11_1082 hypothetical protein YP_001996114.1 PFAM: SNARE associated Golgi protein; KEGG: cph:Cpha266_1018 DedA family protein YP_001996115.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001996116.1 PFAM: aminotransferase class V; KEGG: cph:Cpha266_2460 serine--glyoxylate transaminase YP_001996117.1 PFAM: NUDIX hydrolase; KEGG: pvi:Cvib_0546 NUDIX hydrolase YP_001996118.1 PFAM: phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sru:SRU_0468 acetyl-CoA carboxylase, biotin carboxylase YP_001996119.1 PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: cph:Cpha266_0188 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein YP_001996120.1 PFAM: acriflavin resistance protein; KEGG: cph:Cpha266_1045 acriflavin resistance protein YP_001996121.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1044 efflux transporter, RND family, MFP subunit YP_001996122.1 PFAM: regulatory protein TetR; KEGG: mac:MA2761 transcriptional regulator, TetR family YP_001996123.1 KEGG: cph:Cpha266_1942 hypothetical protein YP_001996124.1 PFAM: Heparinase II/III family protein; KEGG: cpf:CPF_0471 heparinase II/III-like protein YP_001996125.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001996126.1 KEGG: cth:Cthe_2380 TPR repeat domain containing protein YP_001996127.1 KEGG: ang:An16g03020 hypothetical protein Pfam: DUF1908 TBPIP Microtub_assoc Filament Myosin_tail_1 CHASE3 Tup_N Prefoldin_2 DUF593 Pox_A_type_inc L27 Vicilin_N Rota_NSP3 HalX DUF1348 DUF869 RasGAP_C Rab5-bind Myc-LZ PROSITE: GLU_RICH YP_001996128.1 KEGG: fjo:Fjoh_4642 molybdopterin-guanine dinucleotide biosynthesis protein A-like protein YP_001996129.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: sat:SYN_00289 molybdopterin-guanine dinucleotide biosynthesis protein B YP_001996130.1 PFAM: Integral membrane protein TerC; KEGG: hau:Haur_2706 integral membrane protein TerC YP_001996131.1 KEGG: cph:Cpha266_1535 hypothetical protein YP_001996132.1 KEGG: tpt:Tpet_0287 hypothetical protein YP_001996133.1 KEGG: cch:Cag_1100 hypothetical protein YP_001996134.1 KEGG: cph:Cpha266_2704 lipoprotein YP_001996135.1 KEGG: cph:Cpha266_2703 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_001996136.1 KEGG: cph:Cpha266_1201 hypothetical protein YP_001996137.1 KEGG: shl:Shal_1180 hypothetical protein YP_001996138.1 TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cph:Cpha266_0336 thiamine-monophosphate kinase YP_001996139.1 KEGG: cch:Cag_1212 cell division transporter substrate-binding protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001996140.1 KEGG: gtn:GTNG_2435 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_001996141.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ape:APE_1732 ABC transporter, ATP binding protein YP_001996144.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001996145.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: cte:CT0243 tRNA pseudouridine synthase B YP_001996146.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: cte:CT0244 riboflavin biosynthesis protein RibF YP_001996147.1 PFAM: ribosomal protein S15; KEGG: cte:CT0245 30S ribosomal protein S15 YP_001996148.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_001996149.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001996150.1 PFAM: Peptidase M23; KEGG: bvu:BVU_1909 peptidase YP_001996151.1 KEGG: cte:CT1668 hypothetical protein YP_001996152.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: cph:Cpha266_0533 surface antigen (D15) YP_001996156.1 KEGG: nmr:Nmar_1772 lysine 2,3-aminomutase related protein YP_001996157.1 PFAM: small multidrug resistance protein; KEGG: plt:Plut_1476 SMR drug efflux transporter YP_001996158.1 KEGG: hha:Hhal_1830 hypothetical protein YP_001996159.1 KEGG: chu:CHU_2334 hypothetical protein YP_001996160.1 KEGG: hha:Hhal_1832 hypothetical protein YP_001996161.1 PFAM: cytochrome c assembly protein; KEGG: chu:CHU_3245 possible ABC transport permease, cytochrome c biogenesis YP_001996162.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: rrs:RoseRS_1116 Na+/Ca+ antiporter, CaCA family YP_001996163.1 PFAM: fatty acid hydroxylase; KEGG: cph:Cpha266_1574 sterol desaturase YP_001996164.1 KEGG: afu:AF0263 A. fulgidus predicted coding region AF0263 YP_001996165.1 PFAM: protein of unknown function DUF1350; KEGG: amr:AM1_6201 hypothetical protein YP_001996166.1 KEGG: noc:Noc_2233 hypothetical protein YP_001996167.1 KEGG: bcm:Bcenmc03_2510 hypothetical protein YP_001996168.1 PFAM: ferredoxin; KEGG: plt:Plut_0628 chlorosome envelope protein J YP_001996169.1 PFAM: ferredoxin; KEGG: plt:Plut_0893 chlorosome envelope protein I YP_001996170.1 KEGG: sru:SRU_0484 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin YP_001996171.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: plt:Plut_0627 alanine dehydrogenase YP_001996172.1 PFAM: FAD dependent oxidoreductase; KEGG: cph:Cpha266_0874 amine oxidase YP_001996173.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_001996174.1 KEGG: plt:Plut_0624 hypothetical protein YP_001996175.1 PFAM: regulatory protein ArsR; KEGG: cte:CT0646 transcriptional regulator, ArsR family YP_001996176.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aba:Acid345_2686 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001996177.1 PFAM: heat shock protein Hsp20; KEGG: cte:CT0644 heat shock protein, HSP20 family YP_001996178.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001996179.1 KEGG: cch:Cag_1894 photosystem P840 reaction center protein PscD YP_001996180.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: amr:AM1_4819 RmlD substrate binding domain YP_001996181.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; Lycopene beta and epsilon cyclase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cte:CT2256 geranylgeranyl hydrogenase YP_001996182.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: cph:Cpha266_0975 hydrogenase maturation protease YP_001996183.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: bfs:BF2522 cobalamin biosynthesis protein YP_001996184.1 PFAM: aminotransferase class I and II; KEGG: pdi:BDI_2337 L-threonine-O-3-phosphate decarboxylase YP_001996185.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: vha:VIBHAR_02199 hypothetical protein YP_001996186.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_001996187.1 KEGG: ana:alr0508 unknown protein YP_001996188.1 PFAM: SMC domain protein; KEGG: swo:Swol_0204 hypothetical protein YP_001996189.1 TIGRFAM: sun protein; transcription antitermination factor NusB; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: cph:Cpha266_1768 sun protein YP_001996190.1 KEGG: ava:Ava_4077 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001996191.1 KEGG: ava:Ava_4076 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_001996192.1 KEGG: xoo:XOO2499 phytase precursor YP_001996193.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_1368 TonB-dependent receptor YP_001996194.1 catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine YP_001996195.1 catalyzes the formation of Mg-protoporphyrin IX from protoporphyrin IX and Mg(2+); first committed step of chlorophyll biosynthesis YP_001996196.1 KEGG: pvi:Cvib_0319 hypothetical protein YP_001996197.1 KEGG: cte:CT1955 magnesium-chelatase, bacteriochlorophyll c-specific subunit; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase YP_001996198.1 PFAM: protein of unknown function DUF169; KEGG: cph:Cpha266_0156 protein of unknown function DUF169 YP_001996199.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pvi:Cvib_0321 TonB-dependent receptor, plug YP_001996201.1 KEGG: pvi:Cvib_0319 hypothetical protein YP_001996202.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_0200 radical SAM domain protein YP_001996203.1 KEGG: cph:Cpha266_2513 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_001996204.1 PFAM: WD-40 repeat protein; KEGG: rrs:RoseRS_0892 WD-40 repeat protein YP_001996205.1 KEGG: cph:Cpha266_0313 hypothetical protein YP_001996206.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: cph:Cpha266_1335 fumarylacetoacetate (FAA) hydrolase YP_001996209.1 PFAM: TrkA-N domain protein; Ion transport 2 domain protein; KEGG: tel:tll2456 probable potassium channel protein YP_001996210.1 PFAM: cyclic nucleotide-binding; KEGG: scl:sce4318 cAMP-binding protein probable transcriptional regulatory protein YP_001996211.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_001996212.1 PFAM: ferric-uptake regulator; KEGG: bba:Bd1656 ferric uptake regulator-like protein YP_001996213.1 KEGG: cte:CT1591 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_001996214.1 TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: cte:CT0990 polyA polymerase family protein YP_001996215.1 KEGG: pde:Pden_2307 cytochrome c1 YP_001996216.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mka:MK0670 predicted NADH-flavin reductase YP_001996217.1 KEGG: cte:CT0959 hypothetical protein YP_001996218.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: plt:Plut_1196 hypothetical protein YP_001996219.1 KEGG: gur:Gura_1705 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_001996220.1 PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: cbf:CLI_2341 stress responsive A/B barrel domain protein YP_001996221.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: scl:sce3803 ATP/GTP-binding protein YP_001996222.1 PFAM: ABC-2 type transporter; KEGG: pvi:Cvib_0863 ABC-2 type transporter YP_001996223.1 PFAM: ABC-2 type transporter; KEGG: pvi:Cvib_0862 ABC-2 type transporter YP_001996224.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_0861 ABC transporter related YP_001996225.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_1081 ATPase YP_001996226.1 KEGG: lic:LIC10064 hypothetical protein YP_001996227.1 KEGG: pvi:Cvib_0859 ABC transport system, lipoprotein YP_001996228.1 PFAM: outer membrane efflux protein; KEGG: pdi:BDI_1337 outer membrane efflux protein YP_001996229.1 PFAM: regulatory protein TetR; KEGG: plt:Plut_1083 transcriptional regulator, TetR family YP_001996230.1 KEGG: fjo:Fjoh_2425 glycosyl transferase, group 1 YP_001996231.1 KEGG: chu:CHU_1596 hypothetical protein YP_001996232.1 required for 70S ribosome assembly YP_001996233.1 PFAM: ribonuclease H; KEGG: cte:CT1612 ribonuclease H YP_001996234.1 KEGG: cph:Cpha266_0580 hypothetical protein YP_001996235.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tvo:TVN0419 peroxiredoxin YP_001996236.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001996237.1 PFAM: Cobyrinic acid ac-diamide synthase; protein of unknown function DUF59; KEGG: cph:Cpha266_2014 protein of unknown function DUF59 YP_001996238.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: plt:Plut_0398 NifU protein YP_001996239.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sth:STH2653 oligopeptide ABC transporter permease protein YP_001996240.1 TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: pgi:PG0321 arginine/ornithine transport system ATPase YP_001996241.1 PFAM: heat shock protein DnaJ domain protein; KEGG: fno:Fnod_1244 chaperone protein DnaJ YP_001996242.1 KEGG: scl:sce_pseudo_03 pseudogene YP_001996243.1 PFAM: HhH-GPD family protein; KEGG: cya:CYA_0846 base excision DNA repair protein, HhH-GPD family YP_001996244.1 KEGG: chu:CHU_1740 hypothetical protein YP_001996245.1 KEGG: rrs:RoseRS_0128 peptidase C14, caspase catalytic subunit P20 YP_001996246.1 KEGG: sfu:Sfum_0247 hypothetical protein YP_001996247.1 PFAM: protein of unknown function DUF159; KEGG: bsu:BSU20490 hypothetical protein YP_001996248.1 PFAM: metallophosphoesterase; KEGG: pvi:Cvib_1675 metallophosphoesterase YP_001996249.1 KEGG: cph:Cpha266_0505 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_001996250.1 PFAM: protein of unknown function DUF147; KEGG: sru:SRU_1946 conserved hypothetical protein TIGR00159 YP_001996251.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_0493 ATPase YP_001996252.1 KEGG: tpd:Teth39_0043 nucleic acid-binding protein contains PIN domain-like protein YP_001996253.1 KEGG: tpd:Teth39_0042 hypothetical protein YP_001996254.1 KEGG: amt:Amet_0301 hypothetical protein YP_001996255.1 KEGG: gme:Gmet_2499 hypothetical protein YP_001996256.1 PFAM: phosphatidylserine decarboxylase-related; KEGG: sun:SUN_0883 phosphatidylserine decarboxylase YP_001996257.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive YP_001996258.1 PFAM: response regulator receiver; PglZ domain protein; KEGG: sru:SRU_2418 response regulator YP_001996259.1 KEGG: sfu:Sfum_2863 hypothetical protein YP_001996260.1 PFAM: KWG Leptospira repeat protein; KEGG: cbb:CLD_2892 KWG leptospira repeat protein YP_001996261.1 KEGG: cph:Cpha266_1051 hypothetical protein YP_001996262.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cph:Cpha266_0040 ribonuclease, Rne/Rng family YP_001996263.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_001996264.1 TIGRFAM: MoaD family protein; PFAM: thiamineS protein; KEGG: bav:BAV0825 molybdopterin converting factor small subunit YP_001996265.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: pho:PH0184 molybdopterinconverting factor, subunit YP_001996266.1 PFAM: AIG2 family protein; KEGG: dau:Daud_0807 hypothetical protein YP_001996267.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001996268.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001996269.1 KEGG: cte:CT1920 hypothetical protein YP_001996270.1 PFAM: carbonic anhydrase; KEGG: aha:AHA_0375 carbonic anhydrase YP_001996271.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_001996272.1 KEGG: cth:Cthe_0076 hypothetical protein YP_001996273.1 PFAM: acylphosphatase; KEGG: mca:MCA0713 acylphosphatase YP_001996274.1 KEGG: cph:Cpha266_2678 FtsH-2 peptidase. Metallo peptidase. MEROPS family M41; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001996276.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_001996278.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_1453 TPR repeat YP_001996279.1 PFAM: protein of unknown function DUF1486; KEGG: ana:alr3729 unknown protein YP_001996280.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: chu:CHU_2180 oligopeptide ABC transporter, permease YP_001996281.1 light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production YP_001996282.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_001996283.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_001996284.1 PFAM: Peptidase M23; KEGG: gfo:GFO_3290 secreted peptidase, family M23 YP_001996285.1 PFAM: protein of unknown function DUF583; KEGG: sru:SRU_0909 protein of unknown function, DUF583 family YP_001996286.1 KEGG: pvi:Cvib_1745 hypothetical protein YP_001996287.1 KEGG: cch:Cag_0063 hypothetical protein YP_001996288.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0 YP_001996289.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: plt:Plut_2097 ATP synthase F0, C subunit YP_001996290.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_001996291.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001996292.1 PFAM: protein of unknown function UPF0102; KEGG: cph:Cpha266_0037 hypothetical protein YP_001996293.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001996294.1 KEGG: lbi:LEPBI_I0670 hypothetical protein YP_001996295.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: aae:aq_1925 N-methylhydantoinase B YP_001996296.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: cte:CT1197 chlorobiumquinone synthase BchC related protein YP_001996297.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1498 ATPase YP_001996298.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tet:TTHERM_00713550 TPR Domain containing protein Pfam: Pkinase_Tyr Pkinase TPR_2 TPR_1 LMP PROSITE: TPR TPR_REGION PROTEIN_KINASE_DOM YP_001996299.1 PFAM: phosphofructokinase; cyclic nucleotide-binding; KEGG: scl:sce3426 phosphofructokinase-domain containing protein YP_001996300.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_001996301.1 PFAM: DoxX family protein; KEGG: pvi:Cvib_0956 DoxX family protein YP_001996302.1 KEGG: cph:Cpha266_1894 hypothetical protein YP_001996303.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3497 peptidase-like YP_001996304.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: fps:FP0623 RNA polymerase ECF-type sigma factor YP_001996306.1 KEGG: gfo:GFO_1054 hypothetical protein YP_001996307.1 PFAM: Ferritin Dps family protein; KEGG: mhu:Mhun_0131 ferritin and Dps YP_001996308.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cte:CT0474 hydrogenase gamma subunit YP_001996309.1 PFAM: protein of unknown function DUF255; KEGG: sus:Acid_7180 protein of unknown function DUF255 YP_001996310.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001996311.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_001996312.1 PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; RimK domain protein ATP-grasp; KEGG: pvi:Cvib_1383 carbamoyl-phosphate synthase large subunit YP_001996313.1 KEGG: chu:CHU_2530 hypothetical protein YP_001996314.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VP1995 ABC transporter, ATP-binding protein YP_001996315.1 PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_2826 ABC efflux pump, inner membrane subunit YP_001996316.1 KEGG: sru:SRU_2084 hypothetical protein YP_001996317.1 KEGG: sru:SRU_2553 hypothetical protein YP_001996318.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001996319.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cte:CT0274 carbon-nitrogen hydrolase family protein YP_001996320.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001996321.1 PFAM: glycosyl transferase family 2; KEGG: plt:Plut_1974 dolichyl-phosphate beta-D-mannosyltransferase YP_001996322.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0220 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001996323.1 KEGG: cph:Cpha266_0219 photosystem P840 reaction center, large subunit YP_001996324.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; KEGG: cau:Caur_2685 regulatory protein MerR YP_001996325.1 KEGG: chu:CHU_1311 hypothetical protein YP_001996326.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_001996327.1 transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine YP_001996328.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: fno:Fnod_0339 beta-lactamase domain protein YP_001996329.1 KEGG: tva:TVAG_319400 conserved hypothetical protein Pfam: SMC_N PROSITE: ARG_RICH GLU_RICH LYS_RICH NLS_BP YP_001996330.1 PFAM: inner-membrane translocator; KEGG: cte:CT1199 membrane protein YP_001996331.1 PFAM: Tail Collar domain protein; KEGG: mag:amb1460 Microcystin-dependent protein YP_001996332.1 PFAM: Fibronectin type III domain protein; KEGG: gur:Gura_0762 hypothetical protein YP_001996333.1 PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: chy:CHY_2197 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_001996334.1 PFAM: surface antigen (D15); Patatin; KEGG: pvi:Cvib_0421 surface antigen (D15) YP_001996335.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: cph:Cpha266_2032 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_001996336.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0570 tetratricopeptide TPR_2 repeat protein YP_001996337.1 KEGG: bba:Bd0416 hypothetical abductin-like protein YP_001996338.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_0442 transcriptional regulator, Fis family YP_001996339.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: cph:Cpha266_0441 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_001996340.1 KEGG: rcm:A1E_03985 hypothetical protein YP_001996342.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001996345.1 PFAM: YcfA family protein; KEGG: mhu:Mhun_0399 YcfA-like YP_001996346.1 PFAM: Methyltransferase type 11; KEGG: cau:Caur_0428 methyltransferase type 11 YP_001996347.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: shn:Shewana3_3180 GPR1/FUN34/YaaH family protein YP_001996348.1 PFAM: aminotransferase class V; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tte:TTE0651 predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis YP_001996349.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: cph:Cpha266_1264 carbohydrate kinase, YjeF related protein YP_001996350.1 PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: pth:PTH_2281 beta-glucosidase-related glycosidases and D-alanyl-D-alanine dipeptidase YP_001996351.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_001996352.1 KEGG: btr:Btr_1497 adenylate kinase YP_001996353.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001996354.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: pin:Ping_2098 aspartate racemase YP_001996356.1 PFAM: transposase IS4 family protein; KEGG: amr:AM1_5147 transposase, IS4 family YP_001996357.1 KEGG: ckl:CKL_4057 phage related protein YP_001996358.1 KEGG: tde:TDE0469 hypothetical protein YP_001996359.1 KEGG: vei:Veis_2986 exporters of the RND superfamily-like protein YP_001996360.1 KEGG: vei:Veis_2986 exporters of the RND superfamily-like protein YP_001996361.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001996362.1 KEGG: sse:Ssed_3188 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_001996363.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: cte:CT2237 hypothetical protein YP_001996364.1 KEGG: plt:Plut_2041 hypothetical protein YP_001996365.1 PFAM: NUDIX hydrolase; KEGG: ppr:PBPRA1244 hypothetical protein YP_001996366.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cte:CT1215 thioredoxin YP_001996367.1 PFAM: peptidase S45 penicillin amidase; KEGG: hau:Haur_4995 penicillin amidase YP_001996368.1 KEGG: rno:25745 myosin, heavy polypeptide 9, non-muscle YP_001996369.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tet:TTHERM_01156780 SLEI family protein Pfam: TPR_2 TPR_1 FAT TOM20_plant Sel1 TPR_3 CPL MIT TipAS DUF627 PROSITE: SBP_BACTERIAL_1 TPR TPR_REGION YP_001996370.1 PFAM: histone family protein DNA-binding protein; KEGG: pvi:Cvib_1506 histone family protein DNA-binding protein YP_001996371.1 KEGG: cte:CT0296 hypothetical protein YP_001996372.1 KEGG: cte:CT0297 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001996373.1 KEGG: sru:SRU_1710 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001996375.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_2159 ABC transporter related YP_001996376.1 PFAM: WD40 domain protein beta Propeller; KEGG: gur:Gura_0966 peptidase S9B, dipeptidylpeptidase IV domain protein YP_001996377.1 TIGRFAM: spermidine synthase; S-adenosylmethionine decarboxylase proenzyme; PFAM: Spermine synthase; S-adenosylmethionine decarboxylase related; KEGG: bba:Bd3616 probable spermidine synthase YP_001996378.1 PFAM: protein of unknown function DUF124; KEGG: sru:SRU_0303 conserved hypothetical protein TIGR00266 YP_001996379.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cch:Cag_1602 bacterioferritin comigratory protein, thiol peroxidase YP_001996380.1 KEGG: gfo:GFO_2290 conserved hypothetical protein, membrane YP_001996381.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gfo:GFO_2288 ABC-type multidrug transporter ATP-binding protein YP_001996382.1 KEGG: lil:LA3149 hemin receptor YP_001996384.1 PFAM: Mammalian cell entry related domain protein; KEGG: sat:SYN_00409 ABC-type transport system involved in resistance to organic solvents, periplasmic component YP_001996385.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cph:Cpha266_1769 tyrosine recombinase XerD YP_001996386.1 KEGG: sru:SRU_1860 hypothetical protein YP_001996387.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; histidine kinase HAMP region domain protein; KEGG: mgm:Mmc1_1583 adenylate/guanylate cyclase YP_001996388.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: plt:Plut_1543 molybdenum-binding protein-like YP_001996389.1 KEGG: cau:Caur_0238 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001996390.1 PFAM: TonB-dependent receptor; KEGG: plt:Plut_1540 TonB-dependent receptor YP_001996391.1 PFAM: chaperonin Cpn10; KEGG: cch:Cag_1167 chaperonin, 10 kDa YP_001996392.1 KEGG: tet:TTHERM_01020770 hypothetical protein Pfam: VAR1 Nnf1 NUC153 YP_001996393.1 KEGG: ana:all4673 quinolinate synthetase; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A YP_001996394.1 PFAM: AIG2 family protein; KEGG: mja:MJ1514 hypothetical protein YP_001996395.1 PFAM: SNARE associated Golgi protein; KEGG: cph:Cpha266_0812 DedA family protein YP_001996396.1 PFAM: protein of unknown function DUF368; KEGG: pdi:BDI_1390 hypothetical protein YP_001996397.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_001996398.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: plt:Plut_1954 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit YP_001996399.1 KEGG: plt:Plut_1953 hypothetical protein YP_001996400.1 KEGG: cau:Caur_0125 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001996401.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: cph:Cpha266_1935 ExsB protein YP_001996402.1 KEGG: cte:CT0480 hypothetical protein YP_001996403.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pvi:Cvib_0193 HNH endonuclease YP_001996404.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: plt:Plut_1651 carbamoyl-phosphate synthase, medium subunit YP_001996405.1 KEGG: sil:SPO1999 hypothetical protein YP_001996406.1 TIGRFAM: C-20 methyltransferase BchU; PFAM: O-methyltransferase family 2; KEGG: cte:CT0028 CrtF-related protein YP_001996408.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aae:aq_788 NADH dehydrogenase YP_001996409.1 KEGG: cch:Cag_0502 hypothetical protein YP_001996410.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_001996411.1 PFAM: MscS Mechanosensitive ion channel; KEGG: fps:FP0890 probable small-conductance mechanosensitive ionchannel MscS1 YP_001996412.1 PFAM: DNA alkylation repair enzyme; KEGG: cph:Cpha266_1009 hypothetical protein YP_001996413.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cte:CT0700 cysteine synthase YP_001996414.1 PFAM: FG-GAP repeat protein; KEGG: ava:Ava_0582 integrins alpha chain YP_001996415.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001996416.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: plt:Plut_1472 methionyl-tRNA formyltransferase YP_001996417.1 KEGG: sru:SRU_0153 hypothetical protein YP_001996419.1 KEGG: abo:ABO_2387 hypothetical protein YP_001996420.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gfo:GFO_1277 secreted protein containing a thioredoxin domain YP_001996421.1 KEGG: bfs:BF1593 hypothetical protein YP_001996422.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001996423.1 KEGG: mdo:100027290 similar to developmental myosin heavy chain neonatal YP_001996424.1 KEGG: cte:CT0732 hypothetical protein YP_001996425.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_001996426.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001996427.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001996428.1 PFAM: protein of unknown function DUF309; KEGG: cyt:cce_3397 hypothetical protein YP_001996429.1 PFAM: Septum formation initiator; KEGG: cte:CT0146 hypothetical protein YP_001996430.1 KEGG: cte:CT0147 GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein YP_001996431.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: dvl:Dvul_1399 phospholipid/glycerol acyltransferase YP_001996432.1 PFAM: YceI family protein; KEGG: gfo:GFO_1427 secreted protein YP_001996433.1 PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: afu:AF0676 adenylate kinase YP_001996434.1 KEGG: cph:Cpha266_1540 hypothetical protein YP_001996435.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: cph:Cpha266_1539 radical SAM enzyme, Cfr family YP_001996436.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: cph:Cpha266_0920 phosphoribosylanthranilate isomerase YP_001996437.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: esi:Exig_2875 PAS/PAC sensor signal transduction histidine kinase YP_001996438.1 KEGG: sil:SPO0570 hypothetical protein YP_001996439.1 PFAM: PKD domain containing protein; KEGG: sil:SPO0571 PKD domain protein YP_001996440.1 PFAM: Fmu (Sun) domain protein; KEGG: dar:Daro_3159 Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p YP_001996441.1 TIGRFAM: lipoprotein; PFAM: protein of unknown function DUF285 lipoprotein; KEGG: swd:Swoo_3150 lipoprotein YP_001996442.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: cph:Cpha266_0244 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001996443.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_1761 ATPase YP_001996444.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cno:NT01CX_0487 ethanolamine utilization protein EutN/carboxysome structural protein CcmL YP_001996445.1 PFAM: GLUG domain protein; KEGG: swo:Swol_1076 surface proteins containing Ig-like domains-like YP_001996446.1 KEGG: hwa:HQ1081A halomucin YP_001996447.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: cph:Cpha266_2071 ribosome small subunit-dependent GTPase A YP_001996448.1 catalyzes branch migration in Holliday junction intermediates YP_001996449.1 PFAM: ribosomal protein L31; KEGG: pdi:BDI_1945 50S ribosomal protein L31 type B YP_001996450.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001996451.1 KEGG: ava:Ava_4343 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001996452.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001996454.1 involved in de novo purine biosynthesis YP_001996455.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: pvi:Cvib_0482 phosphoribosylglycinamide formyltransferase YP_001996456.1 PFAM: Radical SAM domain protein; KEGG: cch:Cag_0505 radical activating enzyme YP_001996457.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: sus:Acid_0822 type I phosphodiesterase/nucleotide pyrophosphatase YP_001996458.1 KEGG: plt:Plut_0010 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II YP_001996459.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_001996460.1 PFAM: thioesterase superfamily protein; KEGG: tex:Teth514_1196 thioesterase superfamily protein YP_001996461.1 PFAM: protein of unknown function DUF1458; KEGG: cte:CT2229 hypothetical protein YP_001996462.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: cte:CT0121 potassium channel protein YP_001996463.1 KEGG: swi:Swit_5301 hypothetical protein YP_001996464.1 PFAM: Late embryogenesis abundant protein 2; SMART: Water Stress and Hypersensitive response domain protein; KEGG: mmw:Mmwyl1_2935 late embryogenesis abundant protein 2 YP_001996465.1 PFAM: isochorismatase hydrolase; KEGG: cph:Cpha266_0525 isochorismatase hydrolase YP_001996466.1 carries the fatty acid chain in fatty acid biosynthesis YP_001996467.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: plt:Plut_0129 3-oxoacyl-(acyl-carrier-protein) synthase II YP_001996468.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: cph:Cpha266_2495 ribonuclease III YP_001996469.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_001996470.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: ava:Ava_2766 hypothetical protein YP_001996471.1 KEGG: rxy:Rxyl_0876 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001996472.1 KEGG: cte:CT1644 protease IV; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_001996473.1 KEGG: cph:Cpha266_2366 helix-turn-helix domain protein YP_001996474.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001996475.1 KEGG: cph:Cpha266_1504 PIN domain protein YP_001996476.1 PFAM: protein of unknown function DUF955; KEGG: chy:CHY_0294 hypothetical protein YP_001996477.1 PFAM: protein of unknown function DUF140; KEGG: cph:Cpha266_0663 protein of unknown function DUF140 YP_001996478.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_0489 ABC transporter related YP_001996479.1 PFAM: Mammalian cell entry related domain protein; KEGG: cte:CT0325 VpsC protein YP_001996480.1 PFAM: adenylate cyclase; KEGG: reu:Reut_A0631 adenylate cyclase YP_001996481.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cch:Cag_1402 DNA modification methylase-like YP_001996482.1 PFAM: beta-lactamase; KEGG: cte:CT0324 D-alanyl-D-alanine carboxypeptidease YP_001996483.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mgm:Mmc1_1473 conserved hypothetical protein, conserved YP_001996484.1 PFAM: Ribosomal small subunit Rsm22; KEGG: ote:Oter_3565 ribosomal small subunit Rsm22 YP_001996485.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: mxa:MXAN_6610 ATPase, AAA family YP_001996486.1 PFAM: peptidase M16 domain protein; KEGG: aba:Acid345_4406 peptidase M16-like YP_001996487.1 KEGG: sha:SH0326 hypothetical protein YP_001996488.1 KEGG: cph:Cpha266_0062 NADPH-dependent FMN reductase YP_001996489.1 KEGG: cph:Cpha266_0062 NADPH-dependent FMN reductase YP_001996490.1 PFAM: response regulator receiver; histidine kinase A domain protein; KEGG: dol:Dole_1615 response regulator receiver protein YP_001996491.1 KEGG: afw:Anae109_2098 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001996492.1 PFAM: protein of unknown function DUF374; KEGG: plt:Plut_1654 hypothetical protein YP_001996493.1 KEGG: pvi:Cvib_1444 lipid-A-disaccharide synthase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_001996494.1 PFAM: metallophosphoesterase; KEGG: cph:Cpha266_1750 5'-nucleotidase domain protein YP_001996495.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pgi:PG1408 heavy metal efflux pump, CzcD family YP_001996496.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbl:CLK_2227 MATE efflux family protein YP_001996498.1 KEGG: bja:bll3113 hypothetical protein YP_001996499.1 TIGRFAM: methyltransferase FkbM family; KEGG: nmu:Nmul_A0295 methyltransferase FkbM YP_001996500.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA2567 short chain dehydrogenase YP_001996501.1 PFAM: FAD linked oxidase domain protein; KEGG: pap:PSPA7_6248 FAD linked oxidase domain protein YP_001996502.1 PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: pnu:Pnuc_0330 acid phosphatase/vanadium-dependent haloperoxidase related YP_001996503.1 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate YP_001996504.1 PFAM: RNP-1 like RNA-binding protein; KEGG: cch:Cag_1551 RNA-binding region RNP-1 (RNA recognition motif) YP_001996506.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cte:CT0279 phosphoglucomutase/phosphomannomutase family protein YP_001996507.1 TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; KEGG: cte:CT0280 lipid-A-disaccharide synthase YP_001996508.1 PFAM: Proline dehydrogenase; KEGG: fjo:Fjoh_2814 proline dehydrogenase YP_001996509.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ter:Tery_2297 AAA ATPase, central region YP_001996510.1 KEGG: cch:Cag_1091 hypothetical protein YP_001996511.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cch:Cag_1347 TatD-related deoxyribonuclease YP_001996512.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001996513.1 KEGG: tdn:Tmden_0734 hypothetical protein YP_001996514.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: cte:CT1809 shikimate 5-dehydrogenase YP_001996515.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0709 tetratricopeptide TPR_2 repeat protein YP_001996516.1 KEGG: apj:APJL_0370 hypothetical protein YP_001996518.1 PFAM: phosphoglucose isomerase (PGI); KEGG: chu:CHU_0472 glucose-6-phosphate isomerase YP_001996519.1 KEGG: chu:CHU_3500 anti-sigma regulatory factor YP_001996520.1 KEGG: ava:Ava_3043 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001996521.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: scl:sce0336 cytochrome c551 peroxidase precursor YP_001996522.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001996523.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001996524.1 KEGG: pvi:Cvib_1061 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001996525.1 PFAM: Endoribonuclease L-PSP; KEGG: cyt:cce_3919 endoribonuclease L-PSP YP_001996526.1 KEGG: bpu:BPUM_2912 possible lysophospholipase YP_001996527.1 PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_1637 alpha/beta hydrolase fold YP_001996528.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mba:Mbar_A1323 hypothetical protein YP_001996529.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: pvi:Cvib_1177 alpha-isopropylmalate/homocitrate synthase family transferase YP_001996530.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: plt:Plut_0600 3-isopropylmalate dehydratase, small subunit YP_001996531.1 KEGG: cch:Cag_1900 3-isopropylmalate dehydratase; TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein YP_001996532.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_001996533.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001996534.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001996535.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_001996536.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cph:Cpha266_0853 acetolactate synthase, large subunit YP_001996537.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001996538.1 PFAM: response regulator receiver; KEGG: sus:Acid_1352 multi-sensor hybrid histidine kinase YP_001996539.1 TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: pth:PTH_2856 dissimilatory sulfite reductase (desulfoviridin), gamma subunit YP_001996540.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: mbn:Mboo_0454 hemerythrin-like metal-binding protein YP_001996542.1 PFAM: protein of unknown function DUF152; KEGG: cph:Cpha266_2712 protein of unknown function DUF152 YP_001996543.1 KEGG: chu:CHU_3302 conserved hypothetical protein; possible surface antigen YP_001996544.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cte:CT1631 peptide ABC transporter, permease protein YP_001996546.1 PFAM: extracellular solute-binding protein family 5; KEGG: cch:Cag_1765 peptide ABC transporter, periplasmic peptide-binding protein YP_001996547.1 KEGG: mca:MCA2525 hypothetical protein YP_001996548.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: rxy:Rxyl_0312 peptidase S9, prolyl oligopeptidase active site region YP_001996549.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: plt:Plut_1678 hydrolase, haloacid dehalogenase-like family YP_001996550.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cph:Cpha266_1883 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001996551.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pca:Pcar_2332 predicted hydrolase (HAD superfamily) YP_001996552.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sus:Acid_1056 TonB-dependent receptor YP_001996553.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfr:Sfri_4008 TonB-dependent receptor, plug YP_001996555.1 KEGG: bfs:BF3534 conserved hypothetical outer membrane protein YP_001996556.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pcr:Pcryo_2287 histidine kinase YP_001996557.1 PFAM: response regulator receiver; KEGG: pcr:Pcryo_2288 response regulator receiver domain protein (CheY-like) YP_001996558.1 KEGG: ppd:Ppro_3165 signal transduction histidine kinase with CheB and CheR activity; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_001996559.1 TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: cph:Cpha266_1918 homocitrate synthase YP_001996560.1 KEGG: cph:Cpha266_1919 DNA-binding protein fis / transcriptional regulator, Fis family; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001996561.1 alkyl hydroperoxidase; catalyze the reduction of hydrogen peroxide to water and the reduction of alkyl hydroperoxides to the corresponding alcohols YP_001996562.1 PFAM: alanine racemase domain protein; KEGG: cte:CT1814 hypothetical protein YP_001996563.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cte:CT1813 peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_001996564.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cte:CT1813 peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_001996565.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sru:SRU_1201 tetratricopeptide repeat domain protein YP_001996566.1 PFAM: PspC domain protein; KEGG: bpu:BPUM_3143 possible bacteriophage shock protein C YP_001996567.1 KEGG: cte:CT1398 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001996568.1 PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_0919 alpha/beta hydrolase fold YP_001996569.1 KEGG: gme:Gmet_0515 hypothetical protein YP_001996570.1 PFAM: polysaccharide biosynthesis protein; KEGG: pvi:Cvib_1526 polysaccharide biosynthesis protein YP_001996571.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: aba:Acid345_2516 anti-sigma-factor antagonist YP_001996573.1 KEGG: cte:CT0272 hypothetical protein YP_001996574.1 PFAM: protein of unknown function DUF1275; KEGG: aci:ACIAD1867 conserved hypothetical protein; membrane protein YP_001996575.1 KEGG: mxa:MXAN_6755 hypothetical protein YP_001996576.1 KEGG: cte:CT2013 hypothetical protein YP_001996577.1 KEGG: cph:Cpha266_2377 glycogen/starch synthases, ADP-glucose type; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein YP_001996578.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: cch:Cag_1807 histidinol-phosphate phosphatase YP_001996579.1 KEGG: gsu:GSU1945 fibronectin type III domain protein YP_001996580.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_001996581.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001996583.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bvu:BVU_0242 outer membrane protein OprM precursor YP_001996584.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: fjo:Fjoh_4131 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family YP_001996585.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: fjo:Fjoh_4132 efflux transporter, RND family, MFP subunit YP_001996586.1 PFAM: regulatory protein TetR; KEGG: fjo:Fjoh_4298 transcriptional regulator, TetR family YP_001996587.1 KEGG: lin:lin2946 hypothetical protein YP_001996588.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_001996590.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001996591.1 KEGG: cyt:cce_2443 hypothetical protein YP_001996592.1 KEGG: cyt:cce_2442 hypothetical protein YP_001996593.1 KEGG: cyt:cce_2441 hypothetical protein YP_001996594.1 KEGG: cph:Cpha266_1670 hypothetical protein YP_001996595.1 KEGG: pvi:Cvib_0893 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001996597.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: rba:RB1363 alanine dehydrogenase YP_001996598.1 KEGG: sru:SRU_2546 hypothetical protein YP_001996599.1 KEGG: cch:Cag_1091 hypothetical protein YP_001996600.1 KEGG: cph:Cpha266_1542 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001996601.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cte:CT1414 zeta-carotene desaturase YP_001996602.1 KEGG: plt:Plut_0787 magnesium-chelatase, subunit H; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase YP_001996603.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: plt:Plut_1578 oxidoreductase, Gfo/Idh/MocA family YP_001996604.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: cte:CT0527 excinuclease ABC, subunit A YP_001996605.1 KEGG: pvi:Cvib_0584 hypothetical protein YP_001996606.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_1327 ABC transporter related YP_001996607.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: mba:Mbar_A2597 hypothetical protein YP_001996608.1 PFAM: ATP-binding region ATPase domain protein; KEGG: rfr:Rfer_1978 PAS/PAC sensor signal transduction histidine kinase YP_001996609.1 PFAM: response regulator receiver; KEGG: par:Psyc_0720 probable response regulator receiver, fis type YP_001996610.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: pvi:Cvib_1499 alpha amylase, catalytic region YP_001996611.1 PFAM: ribulose bisphosphate carboxylase large chain; KEGG: cte:CT1772 ribulose-bisphosphate carboxylase large chain YP_001996612.1 PFAM: protein of unknown function UPF0047; KEGG: rpb:RPB_0301 protein of unknown function UPF0047 YP_001996613.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: lsp:Bsph_3725 hypothetical YkqB protein YP_001996614.1 PFAM: protein of unknown function DUF62; KEGG: plt:Plut_0388 hypothetical protein YP_001996615.1 TIGRFAM: methyltransferase FkbM family; KEGG: cyt:cce_0377 hypothetical protein YP_001996616.1 PFAM: permease YjgP/YjgQ family protein; KEGG: plt:Plut_0389 hypothetical protein YP_001996617.1 PFAM: band 7 protein; KEGG: pvi:Cvib_1667 SPFH domain, band 7 family protein YP_001996618.1 PFAM: peptidase M16 domain protein; KEGG: cte:CT1548 peptidase, M16 family YP_001996619.1 KEGG: bid:Bind_1404 membrane protein of unknown function YP_001996620.1 KEGG: bid:Bind_1403 membrane protein of unknown function YP_001996621.1 PFAM: SMC domain protein; KEGG: sru:SRU_1868 exonuclease SbcC YP_001996622.1 KEGG: mbr:MONBRDRAFT_11026 hypothetical protein Pfam: Tymo_45kd_70kd PROSITE: ARGINASE_1 GLU_RICH YP_001996623.1 KEGG: chu:CHU_1737 possible 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001996624.1 KEGG: cph:Cpha266_0422 RNA modification enzyme, MiaB family YP_001996626.1 KEGG: cph:Cpha266_0769 hypothetical protein YP_001996627.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0873 TPR repeat YP_001996628.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Fibronectin type III domain protein; FG-GAP repeat protein; KEGG: dau:Daud_2108 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_001996629.1 PFAM: conserved hypothetical protein; KEGG: tdn:Tmden_0251 hypothetical protein YP_001996630.1 KEGG: mar:MAE_26720 tetratricopeptide protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001996631.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001996632.1 KEGG: bfr:BF2546 hypothetical protein YP_001996633.1 KEGG: bfr:BF2547 hypothetical protein YP_001996634.1 TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; metal dependent phophohydrolase; PFAM: helicase domain protein; metal-dependent phosphohydrolase HD sub domain; KEGG: bfr:BF2548 hypothetical protein YP_001996635.1 KEGG: bfr:BF2549 hypothetical protein YP_001996636.1 TIGRFAM: CRISPR-associated protein Cas6; KEGG: bfr:BF2550 hypothetical protein YP_001996637.1 KEGG: cph:Cpha266_1438 hypothetical protein YP_001996638.1 KEGG: cph:Cpha266_0284 hypothetical protein YP_001996639.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mmw:Mmwyl1_4440 TRAP dicarboxylate transporter-DctP subunit YP_001996640.1 TIGRFAM: TonB family protein; KEGG: sru:SRU_0510 TonB YP_001996641.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: scl:sce5068 TonB-dependent receptor protein YP_001996642.1 KEGG: scl:sce5067 hypothetical protein YP_001996644.1 PFAM: protein of unknown function DUF985; KEGG: mmp:MMP0570 hypothetical protein YP_001996645.1 KEGG: tva:TVAG_087170 viral A-type inclusion protein, Pfam: DUF848 SlyX bZIP_1 HALZ HSF_DNA-bind bZIP_2 ATG16 Microtub_assoc DUF837 Pox_A_type_inc WHEP-TRS HSA EzrA Baculo_PEP_C Rho_Binding Prefoldin BRE1 Tup_N TSC22 Rab5-bind Myosin_tail_1 Vicilin_N Prefoldin_2 DUF869 DegQ V-SNARE DASH_Duo1 Laminin_I TolA HC2 PROSITE: GLN_RICH GLU_RICH LYS_RICH YP_001996646.1 KEGG: cau:Caur_2313 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_001996647.1 KEGG: cau:Caur_2314 phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_001996648.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: sru:SRU_1443 NADH dehydrogenase I, J subunit YP_001996649.1 PFAM: basic membrane lipoprotein; KEGG: cph:Cpha266_1340 basic membrane lipoprotein YP_001996650.1 KEGG: afu:AF1032 purine NTPase YP_001996651.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: cch:Cag_0793 3-beta hydroxysteroid dehydrogenase/isomerase family protein YP_001996652.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase KEGG: pvi:Cvib_0904 cyclic nucleotide-binding protein YP_001996653.1 KEGG: cte:CT1039 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_001996654.1 PFAM: GLUG domain protein; KEGG: swo:Swol_1078 surface proteins containing Ig-like domains-like YP_001996655.1 KEGG: sru:SRU_0114 hypothetical protein YP_001996657.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: plt:Plut_1155 electron transport complex, RnfABCDGE type, C subunit YP_001996658.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: pvi:Cvib_0796 electron transport complex, RnfABCDGE type, D subunit YP_001996659.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: pvi:Cvib_0795 electron transport complex, RnfABCDGE type, G subunit YP_001996660.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_001996661.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: pvi:Cvib_0793 electron transport complex, RnfABCDGE type, A subunit YP_001996662.1 PFAM: ApbE family lipoprotein; KEGG: pvi:Cvib_0792 ApbE family lipoprotein YP_001996663.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: pvi:Cvib_0799 hypothetical protein YP_001996664.1 involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate YP_001996665.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pvi:Cvib_1101 recombination factor protein RarA YP_001996666.1 KEGG: sus:Acid_5833 PAS/PAC sensor protein YP_001996668.1 KEGG: sru:SRU_1532 hypothetical protein YP_001996669.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001996670.1 TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: cte:CT1168 carbohydrate kinase, PfkB family YP_001996671.1 PFAM: lipolytic protein G-D-S-L family; KEGG: gfo:GFO_1948 GDSL-like lipase/acylhydrolase YP_001996672.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gfo:GFO_1949 ABC-type transporter ATP-binding protein YP_001996673.1 PFAM: protein of unknown function DUF214; KEGG: sru:SRU_0696 permease domain protein YP_001996674.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cte:CT2029 competence/damage-inducible protein CinA YP_001996675.1 PFAM: GAF domain protein; KEGG: mgm:Mmc1_1857 metal dependent phosphohydrolase YP_001996676.1 PFAM: GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: aba:Acid345_4432 metal dependent phosphohydrolase YP_001996677.1 KEGG: cph:Cpha266_2284 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_001996678.1 KEGG: cte:CT1636 hypothetical protein YP_001996679.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: cte:CT1207 Sec-independent protein translocase protein TatC YP_001996680.1 PFAM: esterase; KEGG: cte:CT1208 enterochelin esterase and related enzymes YP_001996681.1 KEGG: bxe:Bxe_A4241 hypothetical protein YP_001996682.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmf:P9303_28481 hypothetical protein YP_001996683.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cph:Cpha266_2059 glyoxalase/bleomycin resistance protein/dioxygenase YP_001996684.1 PFAM: von Willebrand factor type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: sat:SYN_02036 von Willebrand factor type A like domain YP_001996687.1 PFAM: protein of unknown function UPF0054; KEGG: pvi:Cvib_0701 protein of unknown function UPF0054 YP_001996688.1 KEGG: cte:CT1998 hypothetical protein YP_001996689.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: cph:Cpha266_0537 prephenate dehydratase YP_001996690.1 PFAM: protein of unknown function DUF28; KEGG: cch:Cag_0165 hypothetical protein YP_001996691.1 KEGG: cph:Cpha266_0539 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_001996692.1 PFAM: TspO/MBR family protein; KEGG: cph:Cpha266_0544 TspO and MBR like proteins YP_001996693.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: msi:Msm_1309 dTDP-D-glucose 4,6-dehydratase, RfbB YP_001996694.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: csc:Csac_1803 UDP-glucose/GDP-mannose dehydrogenase YP_001996696.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cte:CT1663 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001996697.1 PFAM: Nucleotidyl transferase; KEGG: cte:CT0251 UDP-N-acetylglucosamine pyrophosphorylase YP_001996698.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_001996699.1 PFAM: protein of unknown function DUF1239; KEGG: plt:Plut_1768 hypothetical protein YP_001996700.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: cch:Cag_1448 outer membrane protein OmpH YP_001996701.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: sru:SRU_1845 outer membrane protein OmpH YP_001996702.1 PFAM: UvrB/UvrC protein; protein of unknown function DUF151; KEGG: cte:CT0265 hypothetical protein YP_001996703.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: bba:Bd0021 electron transfer flavoprotein alpha-subunit YP_001996704.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: sat:SYN_02636 electron transfer flavoprotein beta-subunit YP_001996705.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: mac:MA2034 potassium channel protein YP_001996706.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: cch:Cag_1074 xanthine/uracil permease family protein YP_001996707.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0473 ABC transporter related YP_001996708.1 PFAM: protein of unknown function DUF541; KEGG: maq:Maqu_3473 protein of unknown function DUF541 YP_001996709.1 KEGG: nis:NIS_1113 hypothetical protein YP_001996710.1 PFAM: glycosyl transferase family 2; KEGG: nis:NIS_1112 glycosyl transferase YP_001996711.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: fps:FP2422 probable DNA/RNA non-specific endonuclease YP_001996713.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001996714.1 PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: plt:Plut_0161 ATPase YP_001996715.1 KEGG: pmy:Pmen_2516 DoxX family protein YP_001996716.1 PFAM: Nucleotidyl transferase; KEGG: cph:Cpha266_2393 mannose-1-phosphate guanylyltransferase (GDP) YP_001996717.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tet:TTHERM_00601840 TPR Domain containing protein Pfam: Pkinase Pkinase_Tyr TPR_2 TPR_1 FAT P_fal_TIGR01639 Avirulence PPR PROSITE: TPR TPR_REGION PROTEIN_KINASE_DOM YP_001996718.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001996719.1 PFAM: band 7 protein; KEGG: dps:DP1869 hypothetical protein YP_001996720.1 PFAM: protein of unknown function DUF107; KEGG: dps:DP1870 hypothetical protein YP_001996721.1 PFAM: cyclic nucleotide-binding; sodium/hydrogen exchanger; KEGG: vvu:VV1_2840 NhaP-type Na+/H+ and K+/H+ antiporters YP_001996722.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cte:CT1766 3-oxoacyl-(acyl-carrier-protein) reductase YP_001996723.1 KEGG: kra:Krad_4397 hypothetical protein YP_001996724.1 KEGG: nmu:Nmul_A2092 conserved hypothetical protein Rv2307c YP_001996726.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: plt:Plut_1489 negative regulator of class I heat shock protein YP_001996727.1 PFAM: GrpE protein; KEGG: pvi:Cvib_1313 GrpE protein YP_001996728.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_001996729.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: cph:Cpha266_0723 hydrogenase assembly chaperone HypC/HupF YP_001996730.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: rca:Rcas_3796 hydrogenase expression/formation protein HypD YP_001996731.1 PFAM: conserved hypothetical protein; KEGG: cch:Cag_1256 TPR repeat YP_001996732.1 KEGG: rru:Rru_A1395 nitrogenase reductase; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein YP_001996733.1 PFAM: nitrogen regulatory protein P-II; KEGG: mba:Mbar_A2280 nitrogen regulatory protein P-II YP_001996734.1 PFAM: nitrogen regulatory protein P-II; KEGG: mba:Mbar_A1554 nitrogen regulatory protein P-II YP_001996735.1 KEGG: rpa:RPA1437 nitrogenase molybdenum-iron protein alpha chain (nitrogenase component I) (dinitrogenase); TIGRFAM: nitrogenase alpha chain; nitrogenase component I, alpha chain; nitrogenase iron-iron protein, alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001996736.1 KEGG: mac:MA1209 nitrogenase, subunit delta; TIGRFAM: Fe-only nitrogenase, delta subunit; PFAM: Vanadium/alternative nitrogenase delta subunit YP_001996737.1 KEGG: rru:Rru_A1392 nitrogenase; TIGRFAM: Fe-only nitrogenase, beta subunit; PFAM: oxidoreductase/nitrogenase component 1 YP_001996738.1 KEGG: rpa:RPA1432 nitroimidazole resistance protein YP_001996739.1 TIGRFAM: Fe-only nitrogenase accessory protein AnfO; PFAM: Nitrogenase iron-iron accessory protein AnfO; KEGG: ckl:CKL_1755 hypothetical protein YP_001996740.1 KEGG: cte:CT1757 hypothetical protein YP_001996741.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rpc:RPC_0884 transcriptional regulator, NifA subfamily, fis family YP_001996742.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: fjo:Fjoh_2885 transcriptional regulator, LysR family YP_001996743.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cph:Cpha266_0725 hydrogenase expression/formation protein HypE YP_001996745.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_001996746.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_001996747.1 PFAM: protein of unknown function DUF177; KEGG: cte:CT2111 hypothetical protein YP_001996748.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001996749.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_001996750.1 PFAM: Polysulphide reductase NrfD; KEGG: plt:Plut_2044 polysulfide reductase, subunit C YP_001996751.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pvi:Cvib_1686 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001996752.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: plt:Plut_2042 twin-arginine translocation pathway signal YP_001996753.1 PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: bha:BH1243 D-tyrosyl-tRNA deacylase YP_001996754.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_001996755.1 PFAM: Endoribonuclease L-PSP; KEGG: cph:Cpha266_1530 endoribonuclease L-PSP YP_001996756.1 PFAM: protein of unknown function DUF192; KEGG: rxy:Rxyl_2570 protein of unknown function DUF192 YP_001996757.1 KEGG: mar:MAE_40520 hypothetical protein YP_001996758.1 PFAM: NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: dra:DR_A0130 methyltransferase YP_001996759.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_001996760.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1008 transcriptional regulator, Fis family YP_001996761.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: fjo:Fjoh_4928 metal dependent phosphohydrolase YP_001996762.1 PFAM: Phosphoglycerate mutase; KEGG: mca:MCA3096 phosphoglycerate mutase family domain protein YP_001996763.1 PFAM: Polyphosphate kinase; KEGG: gfo:GFO_1621 polyphosphate kinase YP_001996764.1 PFAM: Ferritin Dps family protein; KEGG: vpa:VP0077 ferritin YP_001996765.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: cch:Cag_1531 preprotein translocase subunit SecG YP_001996766.1 KEGG: cte:CT0736 hypothetical protein YP_001996767.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001996768.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_001996769.1 KEGG: met:M446_5785 filamentous haemagglutinin family outer membrane protein YP_001996770.1 PFAM: cyclic nucleotide-binding; KEGG: ana:all4541 hypothetical protein YP_001996771.1 KEGG: sus:Acid_0899 peptidase M56, BlaR1 YP_001996772.1 PFAM: NHL repeat containing protein; KEGG: mba:Mbar_A3620 surface layer protein YP_001996773.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: gfo:GFO_1070 membrane-bound lytic murein transglycosylase YP_001996774.1 PFAM: conserved hypothetical protein; KEGG: plt:Plut_0357 hypothetical protein YP_001996775.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_001996776.1 KEGG: cch:Cag_0299 hypothetical protein YP_001996777.1 PFAM: diacylglycerol kinase catalytic region; KEGG: cph:Cpha266_2039 diacylglycerol kinase, catalytic region YP_001996778.1 PFAM: cytochrome c class I; KEGG: cph:Cpha266_0560 photosystem P840 reaction center cytochrome c-551 YP_001996779.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: plt:Plut_1686 SUA5/YciO/YrdC/YwlC YP_001996780.1 PFAM: microcompartments protein; KEGG: dde:Dde_3280 carbon dioxide concentrating mechanism/carboxysome shell protein-like YP_001996781.1 PFAM: microcompartments protein; KEGG: cbk:CLL_A1467 propanediol utilization protein PduA YP_001996782.1 PFAM: phosphatidate cytidylyltransferase; KEGG: pvi:Cvib_1470 phosphatidate cytidylyltransferase YP_001996783.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT0462 ubiquinone/menaquinone biosynthesis methyltransferase YP_001996784.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_001996785.1 KEGG: amt:Amet_3610 5'-nucleotidase domain protein YP_001996786.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cte:CT0464 membrane fusion protein YP_001996787.1 KEGG: cch:Cag_1420 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001996788.1 PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cte:CT1479 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_001996789.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: sus:Acid_4777 histidine kinase YP_001996790.1 PFAM: Na+/solute symporter; KEGG: pvi:Cvib_0542 Na+/solute symporter YP_001996791.1 KEGG: plt:Plut_0487 hypothetical protein YP_001996792.1 KEGG: nmu:Nmul_A0462 hypothetical protein YP_001996793.1 PFAM: GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: lic:LIC11189 hypothetical protein YP_001996794.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0753 ABC transporter, ATP-binding protein YP_001996795.1 PFAM: protein of unknown function DUF1350; KEGG: tva:TVAG_031940 erythrocyte binding protein, Pfam: Cgr1 UVR DUF1388 PROSITE: GLU_RICH LYS_RICH YP_001996796.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bfs:BF3855 regulatory protein YP_001996797.1 KEGG: sma:SAV5688 hypothetical protein YP_001996798.1 PFAM: protein of unknown function DUF201; KEGG: nis:NIS_0499 hypothetical protein YP_001996799.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: nis:NIS_0498 diaminopimelate decarboxylase YP_001996801.1 KEGG: nis:NIS_0497 hypothetical protein YP_001996802.1 PFAM: Peptidase M23; KEGG: nis:NIS_0497 hypothetical protein YP_001996804.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nis:NIS_0496 hypothetical protein YP_001996805.1 KEGG: gfo:GFO_0139 hypothetical protein YP_001996806.1 KEGG: mba:Mbar_A2770 hypothetical protein YP_001996808.1 PFAM: peptidase M16 domain protein; KEGG: gfo:GFO_0807 zinc protease PqqL YP_001996809.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: sru:SRU_2117 outer membrane protein, OMP85 family YP_001996810.1 PFAM: Ig family protein; KEGG: shn:Shewana3_0168 Ig family protein YP_001996811.1 KEGG: cph:Cpha266_0718 hypothetical protein YP_001996813.1 KEGG: rpe:RPE_2422 hypothetical protein YP_001996814.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001996815.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_001996816.1 KEGG: cte:CT0840 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_001996817.1 TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: cph:Cpha266_1196 thioredoxin YP_001996818.1 PFAM: glutaredoxin; KEGG: cau:Caur_1822 glutaredoxin-like protein YP_001996819.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cte:CT0842 thioredoxin reductase YP_001996820.1 KEGG: mja:MJ1322 purine NTPase YP_001996821.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: cte:CT1586 MotA/TolQ/ExbB proton channel family protein YP_001996822.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pvi:Cvib_1378 hypothetical protein YP_001996823.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cph:Cpha266_0605 biopolymer transport protein ExbD/TolR YP_001996824.1 KEGG: mpt:Mpe_A1231 hypothetical protein YP_001996825.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mxa:MXAN_1922 tetratricopeptide repeat protein YP_001996827.1 SMART: Tetratricopeptide domain protein; KEGG: sru:SRU_2196 tetratricopeptide repeat domain protein YP_001996828.1 PFAM: conserved hypothetical protein; KEGG: cte:CT0970 hypothetical protein YP_001996829.1 PFAM: Na+/solute symporter; KEGG: cph:Cpha266_0206 Na+/solute symporter YP_001996830.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cch:Cag_1395 anti-anti-sigma factor YP_001996831.1 PFAM: transposase IS4 family protein; KEGG: amr:AM1_5147 transposase, IS4 family YP_001996832.1 PFAM: OmpA/MotB domain protein; KEGG: cch:Cag_1255 outer membrane protein and related peptidoglycan-associated (LipO)proteins-like YP_001996833.1 KEGG: cch:Cag_1394 tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_001996834.1 PFAM: Phosphoglycerate mutase; KEGG: rrs:RoseRS_2131 phosphohistidine phosphatase, SixA YP_001996835.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: cte:CT0974 Maf protein YP_001996837.1 PFAM: Na+/solute symporter; KEGG: pvi:Cvib_0778 Na+/solute symporter YP_001996838.1 KEGG: cch:Cag_1022 hypothetical protein YP_001996839.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: pvi:Cvib_0671 lipid A biosynthesis acyltransferase YP_001996840.1 TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: gsu:GSU2085 ADP-heptose synthase YP_001996841.1 KEGG: pvi:Cvib_1566 hypothetical protein YP_001996842.1 KEGG: cte:CT0207 pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_001996843.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: cph:Cpha266_0343 phage SPO1 DNA polymerase-related protein YP_001996844.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: cch:Cag_1608 DnaB helicase YP_001996846.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sru:SRU_1226 response regulatory protein YP_001996847.1 catalyzes the zinc dependent deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis and catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP in fatty acid biosynthesis YP_001996848.1 PFAM: glycosyl transferase family 9; KEGG: mlo:mlr2566 ADP-heptose-LPS heptosyltransferase YP_001996849.1 PFAM: glycosyl transferase group 1; KEGG: ppg:PputGB1_1385 glycosyl transferase group 1 YP_001996850.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gka:GK1635 hypothetical protein YP_001996851.1 PFAM: ROK family protein; KEGG: aha:AHA_0779 ROK family protein YP_001996852.1 KEGG: mar:MAE_39530 hypothetical protein YP_001996853.1 KEGG: fjo:Fjoh_1716 AsmA family protein YP_001996854.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: gfo:GFO_0851 secreted Xaa-Pro aminopeptidase YP_001996855.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: cph:Cpha266_2737 RNA methyltransferase, TrmA family YP_001996856.1 PFAM: UbiA prenyltransferase; KEGG: cph:Cpha266_1569 UbiA prenyltransferase YP_001996858.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001996860.1 KEGG: csc:Csac_1831 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_001996861.1 PFAM: YibE/F family protein; KEGG: dde:Dde_1217 multitransmembrane protein-like YP_001996862.1 PFAM: Alkaline phosphatase; KEGG: dde:Dde_1216 alkaline phosphatase YP_001996863.1 KEGG: cph:Cpha266_0311 NAD-dependent epimerase/dehydratase YP_001996864.1 PFAM: cobalbumin biosynthesis protein; KEGG: fjo:Fjoh_0086 cobalbumin biosynthesis enzyme YP_001996867.1 KEGG: sru:SRU_0397 NADH-ubiquinone oxidoreductase 24 kda subunit, TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_001996868.1 KEGG: sru:SRU_0396 NADH dehydrogenase I, D subunit; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa YP_001996869.1 KEGG: sru:SRU_0395 NADH-quinone oxidoreductase chain c/d; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_001996870.1 KEGG: sru:SRU_0394 NADH-quinone oxidoreductase chain B; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_001996871.1 PFAM: methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT0759 hypothetical protein YP_001996872.1 KEGG: nfa:nfa27320 hypothetical protein YP_001996873.1 PFAM: histidine triad (HIT) protein; KEGG: cph:Cpha266_0956 histidine triad (HIT) protein YP_001996874.1 KEGG: cte:CT0201 hypothetical protein YP_001996875.1 KEGG: plt:Plut_0146 hypothetical protein YP_001996876.1 PFAM: protein of unknown function UPF0027; KEGG: ana:all3526 hypothetical protein YP_001996877.1 PFAM: conserved hypothetical protein; KEGG: mca:MCA2182 decarboxylase family protein YP_001996878.1 PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: ava:Ava_0145 peptidase M61 YP_001996879.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: sru:SRU_0800 DNA repair protein RecN YP_001996880.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001996881.1 KEGG: lci:LCK_00897 SKN1 multi-domain protein YP_001996882.1 KEGG: sru:SRU_2713 cadherin domain protein YP_001996883.1 PFAM: nitroreductase; KEGG: sil:SPO1077 nitroreductase family protein YP_001996884.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_001996885.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: cte:CT1626 glycine cleavage system H protein YP_001996886.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: cph:Cpha266_2093 O-succinylbenzoate-CoA ligase YP_001996887.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: plt:Plut_0327 O-succinylbenzoate-CoA synthase YP_001996888.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_001996889.1 PFAM: alpha/beta hydrolase fold; KEGG: ava:Ava_4319 alpha/beta hydrolase fold YP_001996890.1 TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein; KEGG: rxy:Rxyl_2896 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase YP_001996891.1 TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: amr:AM1_A0125 menaquinone-specific isochorismate synthase YP_001996892.1 PFAM: Fibronectin type III domain protein; KEGG: sru:SRU_2713 cadherin domain protein YP_001996893.1 PFAM: regulator of chromosome condensation RCC1; KEGG: ote:Oter_4248 cell surface receptor IPT/TIG domain protein YP_001996894.1 SMART: Fibronectin type III domain protein; KEGG: ote:Oter_4248 cell surface receptor IPT/TIG domain protein YP_001996895.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001996896.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_001996897.1 PFAM: ribosomal protein L35; KEGG: cte:CT2128 50S ribosomal protein L35 YP_001996898.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001996899.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001996901.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: afw:Anae109_1811 peptidase S8 and S53 subtilisin kexin sedolisin YP_001996902.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_001996903.1 KEGG: dau:Daud_0749 hypothetical protein YP_001996904.1 KEGG: plu:plu2731 hypothetical protein YP_001996905.1 KEGG: plu:plu2730 hypothetical protein YP_001996906.1 KEGG: mxa:MXAN_2208 hypothetical protein YP_001996907.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cph:Cpha266_1598 GCN5-related N-acetyltransferase YP_001996908.1 KEGG: sru:SRU_0398 respiratory-chain NADH dehydrogenase 51 Kd subunit family; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit YP_001996910.1 PFAM: ferredoxin; KEGG: sru:SRU_0400 NADH dehydrogenase I, G subunit YP_001996911.1 KEGG: dol:Dole_3272 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001996912.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ccv:CCV52592_0581 molybdate ABC transporter, permease protein YP_001996913.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cha:CHAB381_0317 molybdate ABC transporter, periplasmic molybdate-binding protein YP_001996914.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0438 ABC transporter related YP_001996915.1 KEGG: cph:Cpha266_0439 TOBE domain protein YP_001996916.1 PFAM: glycosyl transferase group 1; KEGG: ava:Ava_2434 glycosyl transferase, group 1 YP_001996917.1 PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_B2250 glycosyltransferase YP_001996918.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: cbf:CLI_3164 polysaccharide biosynthesis protein YP_001996919.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_7436 methyltransferase type 11 YP_001996921.1 PFAM: Heparinase II/III family protein; KEGG: cpf:CPF_0471 heparinase II/III-like protein YP_001996922.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: sus:Acid_0272 asparagine synthase (glutamine-hydrolyzing) YP_001996923.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: cau:Caur_2896 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_001996924.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: ana:alr5249 probable transcription accessory protein YP_001996925.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rfr:Rfer_2152 MscS mechanosensitive ion channel YP_001996926.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bth:BT_1799 vitamin B12 receptor precursor YP_001996927.1 PFAM: ferric-uptake regulator; KEGG: cte:CT1455 ferric uptake regulator family protein YP_001996928.1 KEGG: dar:Daro_1033 hypothetical protein YP_001996929.1 KEGG: ava:Ava_3197 Zn-dependent protease with chaperone function-like YP_001996930.1 PFAM: LmbE family protein; KEGG: cch:Cag_1596 hypothetical protein YP_001996932.1 KEGG: chu:CHU_2632 hypothetical protein YP_001996933.1 TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: plt:Plut_1605 bacteriochlorophyll/chlorophyll a synthase YP_001996934.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001996935.1 PFAM: aminotransferase class V; KEGG: sru:SRU_1188 aminotransferase, class V superfamily YP_001996936.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: hau:Haur_3375 antibiotic biosynthesis monooxygenase YP_001996937.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: cph:Cpha266_2099 magnesium transporter YP_001996938.1 KEGG: cte:CT1189 hypothetical protein YP_001996939.1 PFAM: acyltransferase 3; KEGG: ava:Ava_4836 acyltransferase 3 YP_001996940.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dps:DP0916 phosphomethylpyrimidine kinase (ThiD) YP_001996941.1 KEGG: plt:Plut_0958 thiamine monophosphate synthase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_001996942.1 PFAM: thiamine monophosphate synthase; KEGG: plt:Plut_0959 thiamine-phosphate pyrophosphorylase YP_001996943.1 KEGG: swo:Swol_1571 hypothetical protein YP_001996944.1 PFAM: PilT protein domain protein; KEGG: swo:Swol_1570 PilT-like protein YP_001996945.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_001996946.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: acr:Acry_0963 thiamine biosynthesis protein ThiS YP_001996947.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: sru:SRU_1233 glycine oxidase ThiO YP_001996948.1 KEGG: fjo:Fjoh_1833 hypothetical protein YP_001996949.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sru:SRU_0168 outer membrane protein probably involved in nutrient binding YP_001996950.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: rca:Rcas_2227 excinuclease ABC C subunit domain protein YP_001996951.1 PFAM: glutamine amidotransferase class-I; KEGG: cya:CYA_0959 glutamine amidotransferase, class I YP_001996952.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: chu:CHU_2524 subtilisin-like serine protease YP_001996953.1 KEGG: sru:SRU_1520 uncharacterized domain HDIG protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent phosphohydrolase 7TM intracellular region; SMART: metal-dependent phosphohydrolase HD region YP_001996954.1 KEGG: pvi:Cvib_1279 anthranilate synthase, component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like YP_001996955.1 KEGG: cch:Cag_0494 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001996956.1 KEGG: ter:Tery_2811 tetratricopeptide TPR_2; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_001996957.1 KEGG: dau:Daud_1091 radical SAM domain protein YP_001996958.1 KEGG: cph:Cpha266_1092 hypothetical protein YP_001996959.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_001996960.1 PFAM: polysaccharide export protein; KEGG: sde:Sde_1576 ClpX, ATPase regulatory subunit YP_001996961.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: vpa:VP0221 OtnB protein YP_001996962.1 PFAM: glycosyl transferase family 4; KEGG: dar:Daro_1270 glycosyl transferase, family 4 YP_001996963.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: efa:EF2194 glucose-1-phosphate thymidylyltransferase YP_001996964.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: sit:TM1040_1482 GDP-mannose 4,6-dehydratase YP_001996965.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dps:DP0023 GDP-L-fucose synthetase YP_001996966.1 PFAM: polysaccharide biosynthesis protein; KEGG: mst:Msp_0066 predicted polysaccharide biosynthesis protein YP_001996967.1 PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2179 glycosyl transferase, family 2 YP_001996968.1 KEGG: mst:Msp_0492 predicted glycosyltransferase YP_001996969.1 KEGG: gur:Gura_3055 hypothetical protein YP_001996970.1 PFAM: glycosyl transferase family 2; KEGG: mtp:Mthe_0964 glycosyl transferase, family 2 YP_001996971.1 PFAM: glycosyl transferase family 2; KEGG: mtp:Mthe_0965 glycosyl transferase, family 2 YP_001996972.1 KEGG: pvi:Cvib_1059 protoporphyrin IX magnesium-chelatase; TIGRFAM: magnesium chelatase ATPase subunit I; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase YP_001996973.1 KEGG: cte:CT1296 magnesium-chelatase, subunit D; TIGRFAM: magnesium chelatase ATPase subunit D; PFAM: magnesium chelatase ChlI subunit; von Willebrand factor type A YP_001996974.1 PFAM: GLUG domain protein; KEGG: swo:Swol_1078 surface proteins containing Ig-like domains-like YP_001996975.1 PFAM: Haemagluttinin repeat-containing protein; KEGG: azc:AZC_1915 hypothetical protein YP_001996976.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_001996977.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: cte:CT0747 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_001996979.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cph:Cpha266_0943 CMP/dCMP deaminase, zinc-binding YP_001996980.1 PFAM: protein of unknown function DUF547; KEGG: ote:Oter_0307 protein of unknown function DUF547 YP_001996981.1 PFAM: protein of unknown function DUF814; KEGG: cph:Cpha266_0942 protein of unknown function DUF814 YP_001996982.1 KEGG: cps:CPS_4266 hypothetical protein YP_001996983.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cte:CT1156 long-chain fatty-acid-CoA ligase YP_001996984.1 KEGG: cph:Cpha266_2587 hypothetical protein YP_001996985.1 KEGG: cph:Cpha266_1516 hypothetical protein YP_001996986.1 KEGG: cch:Cag_1133 hypothetical protein YP_001996987.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: pcu:pc1566 hypothetical protein YP_001996988.1 PFAM: Transketolase domain protein; KEGG: tma:TM0954 transketolase, N-terminal subunit YP_001996989.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: lic:LIC11355 transketolase YP_001996990.1 PFAM: aminotransferase class-III; KEGG: swo:Swol_0203 aminotransferase, class III pyridoxal-phosphate dependent YP_001996993.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: fjo:Fjoh_1969 phosphoesterase, PA-phosphatase related YP_001996994.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: plt:Plut_0953 Dhh family protein YP_001996995.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_001996996.1 KEGG: cph:Cpha266_1536 hypothetical protein YP_001996997.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bcl:ABC1313 enoyl-(acyl carrier protein) reductase YP_001996998.1 KEGG: cte:CT1178 hypothetical protein YP_001996999.1 KEGG: bxe:Bxe_B0258 hypothetical protein YP_001997001.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001997002.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: pfu:PF0287 pyrolysin YP_001997003.1 KEGG: cdi:DIP1550 hypothetical protein YP_001997004.1 SMART: peptidase M14 carboxypeptidase A; KEGG: sru:SRU_1726 zinc carboxypeptidase superfamily YP_001997005.1 PFAM: ApbE family lipoprotein; KEGG: swo:Swol_1956 membrane-associated lipoprotein involved in thiamine biosynthesis YP_001997006.1 KEGG: cdf:CD2482 lipoprotein YP_001997007.1 KEGG: maq:Maqu_1816 hypothetical protein YP_001997008.1 KEGG: sde:Sde_3552 lipoprotein YP_001997009.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: maq:Maqu_1818 redoxin domain protein YP_001997010.1 KEGG: afw:Anae109_1823 cytochrome c family protein YP_001997011.1 PFAM: protein of unknown function DUF164; KEGG: plt:Plut_1350 hypothetical protein YP_001997012.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_1504 ABC transporter related YP_001997013.1 PFAM: WD-40 repeat protein; KEGG: aor:AO090010000301 WD40 repeat Pfam: SGL WD40 eIF2A PROSITE: WD_REPEATS_1 WD_REPEATS_2 WD_REPEATS_REGION YP_001997014.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cch:Cag_1320 elongator protein 3/MiaB/NifB YP_001997015.1 PFAM: inner-membrane translocator; KEGG: sfu:Sfum_1505 protein of unknown function DUF534 YP_001997016.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bfr:BF1569 outer membrane vitamin B12 receptor protein YP_001997017.1 KEGG: fjo:Fjoh_1874 hypothetical protein YP_001997018.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: ppd:Ppro_0387 cob(I)alamin adenosyltransferase YP_001997019.1 KEGG: mxa:MXAN_2867 hypothetical protein YP_001997020.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cph:Cpha266_0624 tRNA-adenosine deaminase YP_001997021.1 PFAM: protein of unknown function DUF955; KEGG: bac:BamMC406_6746 protein of unknown function DUF955 YP_001997023.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: bth:BT_4347 RNA polymerase ECF-type sigma factor YP_001997024.1 KEGG: dde:Dde_2862 hypothetical protein YP_001997027.1 PFAM: metallophosphoesterase; KEGG: mja:MJ0912 hypothetical protein YP_001997028.1 PFAM: sugar transferase; KEGG: tbd:Tbd_1801 undecaprenyl-phosphate galactosephosphotransferase YP_001997029.1 KEGG: pmo:Pmob_0944 capsular exopolysaccharide family; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein YP_001997031.1 PFAM: polysaccharide biosynthesis protein; KEGG: bfr:BF2582 capsular polysaccharide repeat unit transporter YP_001997032.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bfr:BF2581 aminotransferase YP_001997033.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: bbr:BB0126 carbamoyl phosphate synthase large subunit YP_001997034.1 PFAM: Methyltransferase type 12; KEGG: lic:LIC12154 3-demethylubiquinone-9 3-methyltransferase YP_001997035.1 KEGG: lbl:LBL_1205 hypothetical protein YP_001997036.1 PFAM: pyruvate carboxyltransferase; KEGG: bvu:BVU_2661 aldolase YP_001997037.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_001997038.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mbu:Mbur_1599 haloacid dehalogenase-like hydrolase YP_001997039.1 KEGG: bav:BAV1252 O antigen biosynthesis sulfotransferase YP_001997040.1 PFAM: glycosyl transferase family 2; KEGG: bth:BT_3372 glycosyltransferase YP_001997042.1 KEGG: pmu:PM1005 unknown YP_001997044.1 PFAM: glycosyl transferase group 1; KEGG: rcm:A1E_03785 hypothetical protein YP_001997045.1 PFAM: oxidoreductase domain protein; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pdi:BDI_1580 zinc-binding dehydrogenase YP_001997046.1 PFAM: Heparinase II/III family protein; KEGG: vvy:VV0358 hypothetical protein YP_001997047.1 PFAM: glycosyl transferase group 1; KEGG: sat:SYN_02685 glycosyltransferase YP_001997048.1 PFAM: sugar transferase; KEGG: cbh:CLC_2559 undecaprenyl-phosphate galactosephosphotransferase YP_001997049.1 PFAM: formyl transferase domain protein; KEGG: cbb:CLD_1851 bifunctional polymyxin resistance protein ArnA YP_001997050.1 PFAM: LmbE family protein; KEGG: rrs:RoseRS_3646 LmbE family protein YP_001997051.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: mbu:Mbur_1588 transferase hexapeptide repeat YP_001997052.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: fps:FP1278 probable aminotransferase YP_001997053.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dsy:DSY3347 hypothetical protein YP_001997054.1 KEGG: chu:CHU_0507 hypothetical protein YP_001997055.1 PFAM: AMP-dependent synthetase and ligase; KEGG: afw:Anae109_1767 AMP-dependent synthetase and ligase YP_001997056.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: pvi:Cvib_0556 2-nitropropane dioxygenase, NPD YP_001997057.1 KEGG: cph:Cpha266_0627 phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase YP_001997058.1 PFAM: extracellular solute-binding protein family 3; Ion transport 2 domain protein; KEGG: plt:Plut_0534 extracellular solute-binding protein, family 3 YP_001997059.1 KEGG: aba:Acid345_4042 isocitrate dehydrogenase (NAD+); TIGRFAM: isocitrate dehydrogenase, NAD-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase YP_001997060.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: hmo:HM1_2082 phosphate ABC transporter, phosphate-binding protein pstd YP_001997061.1 KEGG: chu:CHU_3237 hypothetical protein YP_001997062.1 KEGG: ppp:PHYPADRAFT_169504 hypothetical protein Pfam: Peptidase_M6 Peptidase_M11 YP_001997063.1 KEGG: sru:SRU_1207 hypothetical protein YP_001997064.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ote:Oter_0894 glutamate synthase (ferredoxin) YP_001997065.1 TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: amr:AM1_6355 glutamate synthase [NADPH] small chain YP_001997066.1 KEGG: tan:TA20215 hypothetical protein PROSITE: ARG_RICH GLU_RICH YP_001997067.1 PFAM: glycosyl transferase family 51; KEGG: bth:BT_2501 penicillin-binding protein YP_001997068.1 PFAM: protein of unknown function DUF140; KEGG: gur:Gura_1896 protein of unknown function DUF140 YP_001997069.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmw:Mmwyl1_2413 ABC transporter related YP_001997070.1 PFAM: Mammalian cell entry related domain protein; KEGG: gur:Gura_1894 mammalian cell entry related domain protein YP_001997071.1 KEGG: nve:NEMVE_v1g242448 predicted protein Pfam: TPR_2 TPR_1 HEPN MIT P35 DUF837 Peptidase_C14 PROSITE: TPR TPR_REGION YP_001997072.1 KEGG: hmo:HM1_2082 phosphate ABC transporter, phosphate-binding protein pstd YP_001997073.1 KEGG: cte:CT1106 phosphate-binding protein YP_001997074.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001997078.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: chu:CHU_1086 dihydrolipoyl dehydrogenase (dihydrolipoamide dehydrogenase) YP_001997079.1 PFAM: beta-lactamase domain protein; KEGG: ava:Ava_0646 beta-lactamase-like YP_001997081.1 KEGG: ana:all2379 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001997082.1 KEGG: cac:CAC1081 uncharacterized protein, probably surface-located YP_001997084.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: dde:Dde_3305 choline/carnitine/betaine transport YP_001997085.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: hha:Hhal_1677 methyltransferase type 11 YP_001997086.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hha:Hhal_1678 methyltransferase type 12 YP_001997087.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pvi:Cvib_0875 diguanylate cyclase YP_001997088.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1317 protein of unknown function DUF214 YP_001997089.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1316 protein of unknown function DUF214 YP_001997090.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mxa:MXAN_3382 cation efflux family protein YP_001997091.1 PFAM: cyclic nucleotide-binding; KEGG: scl:sce4318 cAMP-binding protein probable transcriptional regulatory protein YP_001997092.1 PFAM: ferredoxin; KEGG: afw:Anae109_0642 ferredoxin YP_001997093.1 KEGG: cpr:CPR_1696 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase YP_001997094.1 PFAM: 8-oxoguanine DNA glycosylase domain protein; SMART: HhH-GPD family protein; KEGG: cte:CT0996 8-oxoguanine DNA glycosylase YP_001997095.1 KEGG: sru:SRU_2119 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_001997096.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tma:TM1177 hypothetical protein YP_001997097.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: cph:Cpha266_0208 NAD-dependent epimerase/dehydratase YP_001997098.1 KEGG: pvi:Cvib_0856 hypothetical protein YP_001997099.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001997100.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: sru:SRU_0811 2-oxo acid dehydrogenases acyltransferase (catalytic domain) protein YP_001997102.1 PFAM: protein of unknown function DUF419; KEGG: fjo:Fjoh_1371 protein of unknown function DUF419 YP_001997103.1 KEGG: cte:CT0403 hypothetical protein YP_001997104.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: abu:Abu_1074 methyltransferase YP_001997106.1 PFAM: Thioredoxin domain; KEGG: spe:Spro_1155 thioredoxin domain YP_001997107.1 PFAM: integrase family protein; KEGG: cph:Cpha266_2069 phage integrase family protein YP_001997108.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: net:Neut_0716 TonB-dependent heme/hemoglobin receptor family protein YP_001997109.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pdi:BDI_1239 ATP:cob(I)alamin adenosyltransferase YP_001997110.1 TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: cte:CT0384 precorrin-6X reductase/cobalamin biosynthesis protein CbiD YP_001997111.1 KEGG: rca:Rcas_0423 integrin alpha beta-propellor repeat protein YP_001997112.1 TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK; KEGG: cte:CT0384 precorrin-6X reductase/cobalamin biosynthesis protein CbiD YP_001997113.1 KEGG: cte:CT0385 precorrin-4 C11-methyltransferase/cobalamin biosynthesis protein; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein YP_001997114.1 PFAM: WD-40 repeat protein; KEGG: amr:AM1_4295 WD-40 repeat protein YP_001997115.1 TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT0386 precorrin-6y C5,15-methyltransferase, decarboxylating YP_001997116.1 KEGG: cch:Cag_1091 hypothetical protein YP_001997117.1 KEGG: dol:Dole_1759 prevent-host-death family protein YP_001997118.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Precorrin-8X methylmutase CbiC/CobH; KEGG: cte:CT0387 precorrin-3B C17-methyltransferase/precorrin-8X methylmutase YP_001997119.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT0388 precorrin-2 C20-methyltransferase YP_001997121.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mmw:Mmwyl1_1378 cobalamin (vitamin B12) biosynthesis CbiX protein YP_001997122.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT0390 uroporphyrin-III C-methyltransferase YP_001997123.1 KEGG: cte:CT0937 nitroreductase family protein; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase YP_001997124.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: cph:Cpha266_0311 NAD-dependent epimerase/dehydratase YP_001997125.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene YP_001997126.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cpf:CPF_0187 cobalt ABC transporter, permease protein CbiQ YP_001997127.1 PFAM: Cobalt transport protein CbiN; KEGG: cpr:CPR_0183 cobalt/cobalamin transport protein CbiN YP_001997128.1 TIGRFAM: cobalamin biosynthesis protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: tpd:Teth39_1886 cobalamin biosynthesis protein CbiM YP_001997129.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cte:CT0416 hypothetical protein YP_001997130.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cte:CT0415 carbon-nitrogen hydrolase family protein YP_001997131.1 PFAM: protein of unknown function DUF105; KEGG: cte:CT0414 hypothetical protein YP_001997132.1 KEGG: cte:CT0410 iron(III) ABC transporter, periplasmic iron-binding protein YP_001997133.1 KEGG: gur:Gura_2743 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001997134.1 KEGG: cph:Cpha266_0602 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein YP_001997135.1 PFAM: Peptidase M23; KEGG: pdi:BDI_3704 metalloendopeptidase-like membrane protein YP_001997136.1 PFAM: peptidase M61 domain protein; KEGG: ccr:CC_2539 hypothetical protein YP_001997137.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pth:PTH_2144 DNA modification methylase YP_001997138.1 KEGG: hac:Hac_1347 hypothetical protein YP_001997139.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sde:Sde_3703 response regulator receiver domain protein (CheY-like) YP_001997140.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sru:SRU_2487 two-component sensor histidine kinase YP_001997141.1 KEGG: dol:Dole_3005 cytochrome c family protein YP_001997142.1 PFAM: cytochrome B561; KEGG: maq:Maqu_0377 cytochrome b561 YP_001997143.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ote:Oter_1463 protein of unknown function DUF395 YeeE/YedE YP_001997144.1 KEGG: ote:Oter_1462 rhodanese domain protein YP_001997145.1 SMART: Rhodanese domain protein; KEGG: sfu:Sfum_0511 rhodanese domain protein YP_001997146.1 KEGG: cch:Cag_0820 hypothetical protein YP_001997147.1 KEGG: lbl:LBL_0145 phosphodiesterase I YP_001997148.1 PFAM: CBS domain containing protein; Chloride channel core; KEGG: plt:Plut_0919 chloride channel YP_001997149.1 PFAM: thioesterase superfamily protein; KEGG: ppd:Ppro_2603 uncharacterized domain 1 YP_001997150.1 PFAM: AMP-dependent synthetase and ligase; KEGG: chu:CHU_3595 long-chain-fatty-acid--CoA ligase (acyl-CoA synthetase) YP_001997151.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cte:CT1754 receptor YP_001997152.1 KEGG: cph:Cpha266_0451 cytochrome c YP_001997153.1 KEGG: cph:Cpha266_1202 hypothetical protein YP_001997154.1 KEGG: sru:SRU_1400 hypothetical protein YP_001997156.1 KEGG: sru:SRU_1396 hypothetical protein YP_001997158.1 KEGG: bbr:BB0101 hypothetical protein YP_001997159.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: chu:CHU_3760 peroxiredoxin YP_001997160.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: chu:CHU_3759 conserved hypothetical protein; possible alkylhydroperoxidase YP_001997161.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cph:Cpha266_0687 single-stranded-DNA-specific exonuclease RecJ YP_001997162.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_001997163.1 KEGG: dme:Dmel_CG31901 CG31901 YP_001997164.1 PFAM: small multidrug resistance protein; KEGG: fjo:Fjoh_3295 small multidrug resistance protein YP_001997165.1 catalyzes the interconversion of succinyl-CoA and succinate YP_001997170.1 KEGG: hch:HCH_02184 periplasmic protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001997171.1 PFAM: cyclic nucleotide-binding; KEGG: olu:OSTLU_29548 predicted protein YP_001997172.1 KEGG: bfs:BF4096 hypothetical protein YP_001997173.1 KEGG: pfa:PFL0315c hypothetical protein YP_001997174.1 PFAM: PEGA domain protein; KEGG: tle:Tlet_0400 PEGA domain protein YP_001997175.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_001997176.1 KEGG: cph:Cpha266_1321 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_001997177.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_001997178.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_001997179.1 PFAM: arginine repressor; KEGG: cph:Cpha266_1324 transcriptional regulator, ArgR family YP_001997180.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_001997181.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: cte:CT1360 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase YP_001997182.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_001997183.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001997184.1 PFAM: response regulator receiver; KEGG: sfu:Sfum_1337 PAS/PAC sensor hybrid histidine kinase YP_001997185.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cte:CT1364 peptide ABC transporter, permease protein YP_001997186.1 PFAM: cytochrome c assembly protein; KEGG: plt:Plut_1425 HemX protein YP_001997187.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_001997188.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001997189.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: pvi:Cvib_1246 uroporphyrinogen-III synthase YP_001997190.1 PFAM: Patatin; KEGG: cch:Cag_0022 patatin family protein YP_001997191.1 PFAM: transposase IS4 family protein; KEGG: amr:AM1_5147 transposase, IS4 family YP_001997192.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bth:BT_2779 3-demethylubiquinone-9 3-methyltransferase YP_001997193.1 KEGG: plt:Plut_1430 histidinol-phosphate phosphatase, , inositol monophosphatase; TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase YP_001997194.1 KEGG: syn:slr0634 hypothetical protein YP_001997195.1 PFAM: dehydrogenase E1 component; Transketolase central region; Transketolase domain protein; KEGG: bfr:BF1622 2-oxoisovalerate dehydrogenase beta subunit YP_001997196.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001997197.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001997198.1 SMART: leucine-rich repeat-containing protein typical subtype; KEGG: lil:LA3322 leucine-rich repeat containing protein YP_001997199.1 KEGG: sus:Acid_0899 peptidase M56, BlaR1 YP_001997200.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001997201.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001997202.1 PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex YP_001997204.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cch:Cag_0931 elongator protein 3/MiaB/NifB YP_001997206.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: bth:BT_2372 transcriptional regulator YP_001997207.1 binds and unfolds substrates as part of the ClpXP protease YP_001997208.1 KEGG: ote:Oter_3071 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001997209.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tet:TTHERM_01229030 SLEI family protein Pfam: TPR_2 TPR_1 FAT DUF489 TPR_3 Sel1 VAR1 Phage_Treg GBP_C DUF1978 DUF627 TipAS Mad3_BUB1_I MIT PROSITE: TPR TPR_REGION YP_001997210.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: nis:NIS_0128 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic component YP_001997211.1 PFAM: thymidine kinase; KEGG: sru:SRU_2559 thymidine kinase YP_001997212.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; Cytidine and deoxycytidylate deaminase zinc-binding domain protein; KEGG: pth:PTH_0894 cytidine deaminase YP_001997213.1 PFAM: creatinase; peptidase M24; KEGG: cte:CT1608 aminopeptidase P YP_001997214.1 PFAM: Aldehyde Dehydrogenase_; KEGG: cph:Cpha266_2070 aldehyde dehydrogenase YP_001997215.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: net:Neut_0914 protein tyrosine phosphatase YP_001997216.1 PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: rxy:Rxyl_2074 aminoglycoside phosphotransferase YP_001997217.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cch:Cag_1731 RNA methyltransferase TrmH, group 3 YP_001997219.1 KEGG: mar:MAE_57700 hypothetical protein YP_001997220.1 PFAM: electron transport protein SCO1/SenC; KEGG: gfo:GFO_1341 SCO1/SenC family electron transport protein YP_001997221.1 PFAM: cytochrome oxidase assembly; KEGG: hau:Haur_4285 cytochrome oxidase assembly YP_001997222.1 KEGG: cte:CT1178 hypothetical protein YP_001997226.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: plt:Plut_1585 TonB-like YP_001997227.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cte:CT1584 hypothetical protein YP_001997228.1 KEGG: cte:CT1585 hypothetical protein YP_001997229.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: cte:CT1586 MotA/TolQ/ExbB proton channel family protein YP_001997230.1 PFAM: ferrochelatase; KEGG: cph:Cpha266_0481 ferrochelatase YP_001997231.1 KEGG: tcx:Tcr_1143 diguanylate cyclase (GGDEF domain) YP_001997232.1 KEGG: nve:NEMVE_v1g75514 predicted protein PROSITE: HIS_RICH YP_001997233.1 PFAM: protein of unknown function DUF323; PEGA domain protein; KEGG: mgm:Mmc1_2788 protein of unknown function DUF323 YP_001997235.1 KEGG: wol:WD0296 hypothetical protein YP_001997236.1 KEGG: tde:TDE2734 hypothetical protein YP_001997237.1 PFAM: protein of unknown function DUF323; KEGG: bfs:BF2489 hypothetical protein YP_001997238.1 KEGG: ter:Tery_1653 GTP-binding protein, HSR1-related YP_001997240.1 KEGG: aau:AAur_3285 DnaK family protein YP_001997241.1 KEGG: ter:Tery_1654 dynamin YP_001997242.1 KEGG: ter:Tery_1656 hypothetical protein YP_001997243.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: amt:Amet_2194 CRISPR-associated protein Cas4 YP_001997244.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: cth:Cthe_2296 CRISPR-associated protein Cas2 YP_001997245.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: fnu:FN1177 hypothetical protein YP_001997246.1 TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57; KEGG: cph:Cpha266_2044 CRISPR-associated protein Cas6 YP_001997247.1 KEGG: plt:Plut_0961 peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001997248.1 PFAM: Roadblock/LC7 family protein; KEGG: sfu:Sfum_0317 roadblock/LC7 family protein YP_001997249.1 PFAM: Roadblock/LC7 family protein; KEGG: rci:RCIX472 hypothetical protein YP_001997250.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: cyb:CYB_1935 methyl-accepting chemotaxis protein YP_001997251.1 KEGG: cno:NT01CX_1864 chemotaxis protein CheA YP_001997252.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: hch:HCH_00541 chemotaxis protein histidine kinase and related kinase YP_001997253.1 KEGG: tle:Tlet_0174 CheW protein YP_001997254.1 KEGG: cbe:Cbei_3954 CheW protein YP_001997255.1 PFAM: response regulator receiver; KEGG: dol:Dole_1977 response regulator receiver protein YP_001997257.1 KEGG: gur:Gura_4332 GTPase-like protein YP_001997259.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate YP_001997260.1 PFAM: BLUF domain protein; KEGG: tel:tll0078 phototaxis regulatory protein PixD YP_001997261.1 acts as a promotor non-specific transcription repressor YP_001997262.1 PFAM: KaiB domain protein; KEGG: rca:Rcas_4149 KaiB domain protein YP_001997263.1 KEGG: mar:MAE_42970 two-component response regulator YP_001997264.1 KEGG: hau:Haur_0109 hypothetical protein YP_001997265.1 KEGG: gfo:GFO_2051 hypothetical protein YP_001997266.1 KEGG: rrs:RoseRS_0923 hypothetical protein YP_001997267.1 KEGG: cte:CT0118 hypothetical protein YP_001997268.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: plt:Plut_0071 sulfide-quinone reductase YP_001997269.1 PFAM: PEGA domain protein; KEGG: bfs:BF4093 hypothetical protein YP_001997270.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: ote:Oter_1686 channel protein, hemolysin III family YP_001997271.1 KEGG: mta:Moth_0241 glycosyl hydrolase, BNR repeat YP_001997272.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_001997273.1 KEGG: cte:CT1210 hypothetical protein YP_001997274.1 PFAM: manganese and iron superoxide dismutase; KEGG: cte:CT1211 superoxide dismutase YP_001997275.1 KEGG: pvi:Cvib_0979 hypothetical protein YP_001997277.1 PFAM: Fmu (Sun) domain protein; SMART: PUA domain containing protein; KEGG: cte:CT1213 hypothetical protein YP_001997278.1 TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase; KEGG: dra:DR_2364 L-lactate dehydrogenase YP_001997279.1 KEGG: cyt:cce_4775 hypothetical protein YP_001997280.1 KEGG: lbi:LEPBI_I0645 hypothetical protein YP_001997281.1 PFAM: PASTA domain containing protein; KEGG: plt:Plut_1218 hypothetical protein YP_001997282.1 PFAM: LytTr DNA-binding region; KEGG: bth:BT_4566 two-component system response regulator protein YP_001997283.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: sus:Acid_2496 transglutaminase domain protein YP_001997284.1 KEGG: chu:CHU_2600 proteasome-type protease YP_001997285.1 PFAM: protein of unknown function DUF403; KEGG: syf:Synpcc7942_1033 hypothetical protein YP_001997286.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: lbi:LEPBI_I3374 hypothetical protein YP_001997288.1 PFAM: Polyprenyl synthetase; KEGG: cch:Cag_0963 polyprenyl synthetase YP_001997290.1 KEGG: sru:SRU_1567 hypothetical protein YP_001997291.1 PFAM: Radical SAM domain protein; KEGG: chu:CHU_3061 Fe-S oxidoreductase, radical SAM superfamily YP_001997292.1 PFAM: response regulator receiver; KEGG: rca:Rcas_3309 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_001997293.1 KEGG: cph:Cpha266_1337 hypothetical protein YP_001997294.1 PFAM: zinc/iron permease; KEGG: pat:Patl_1472 zinc/iron permease YP_001997296.1 KEGG: plt:Plut_0437 hypothetical protein YP_001997298.1 PFAM: thiamine biosynthesis protein ThiC; KEGG: fjo:Fjoh_1603 thiamine biosynthesis protein ThiC YP_001997299.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: plt:Plut_1461 PucC protein YP_001997300.1 KEGG: ehi:217.t00019 hypothetical protein Pfam: Cas_TM1812 PROSITE: CECROPIN YP_001997301.1 KEGG: cte:CT0599 hypothetical protein YP_001997302.1 KEGG: deb:DehaBAV1_0363 Rieske (2Fe-2S) domain protein YP_001997303.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pvi:Cvib_1006 PHP C-terminal domain protein YP_001997304.1 PFAM: phospholipase/Carboxylesterase; KEGG: cph:Cpha266_2101 phospholipase/carboxylesterase YP_001997305.1 KEGG: pdi:BDI_2497 hypothetical protein YP_001997306.1 KEGG: gur:Gura_3022 hypothetical protein YP_001997307.1 KEGG: bfs:BF1686 hypothetical protein YP_001997308.1 PFAM: FAD dependent oxidoreductase; KEGG: cte:CT1898 protoporphyrinogen oxidase YP_001997309.1 PFAM: Radical SAM domain protein; KEGG: cyb:CYB_0643 radical SAM domain protein YP_001997310.1 KEGG: pae:PA5423 hypothetical protein YP_001997311.1 PFAM: protein of unknown function DUF214; KEGG: aeh:Mlg_1199 protein of unknown function DUF214 YP_001997312.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rba:RB4866 lipoprotein releasing system ATP-binding protein LolD YP_001997314.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pvi:Cvib_0902 methyltransferase type 11 YP_001997315.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: rca:Rcas_4411 deoxyribodipyrimidine photo-lyase YP_001997316.1 KEGG: ote:Oter_4134 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001997317.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sth:STH2751 ABC transporter permease protein YP_001997318.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001997319.1 TIGRFAM: rod shape-determining protein MreD; KEGG: cch:Cag_1165 hypothetical protein YP_001997320.1 KEGG: cph:Cpha266_0817 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_001997321.1 PFAM: FAD linked oxidase domain protein; KEGG: cte:CT0565 oxidoreductase, FAD-binding YP_001997322.1 converts 1,4-alpha-D-glucans to maltodextrin YP_001997323.1 PFAM: cyclic nucleotide-binding; KEGG: chu:CHU_1452 cyclic nucleotide binding regulatory protein YP_001997324.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: ppr:PBPRB1536 hypothetical protein YP_001997325.1 PFAM: Domain of unknown function DUF1863; KEGG: mms:mma_2730 hypothetical protein YP_001997326.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: tma:TM0571 heat shock serine protease, periplasmic YP_001997327.1 KEGG: cph:Cpha266_0809 hypothetical protein YP_001997328.1 TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: sru:SRU_1287 uracil phosphoribosyltransferase YP_001997329.1 PFAM: VanZ family protein; KEGG: ade:Adeh_2354 hypothetical protein YP_001997330.1 PFAM: Peptidase M23; KEGG: cph:Cpha266_0808 peptidase M23B YP_001997331.1 TIGRFAM: TonB family protein; KEGG: bth:BT_2665 TonB YP_001997332.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001997334.1 PFAM: protein of unknown function DUF58; KEGG: sru:SRU_1336 protein of unknown function family YP_001997335.1 PFAM: ferric-uptake regulator; KEGG: hmo:HM1_2044 ferric uptake regulator, fur family YP_001997337.1 PFAM: CobN/magnesium chelatase; KEGG: cte:CT0422 CobN protein YP_001997338.1 KEGG: cte:CT0421 magnesium-chelatase, subunit I family; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase YP_001997339.1 PFAM: magnesium chelatase ChlI subunit; von Willebrand factor type A; ATPase associated with various cellular activities AAA_5; KEGG: cte:CT0420 magnesium-chelatase, subunit D/I family YP_001997340.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ppd:Ppro_1260 TonB-dependent receptor YP_001997341.1 PFAM: CobN/magnesium chelatase; KEGG: cte:CT0418 cobalamin biosynthesis protein CobN YP_001997342.1 PFAM: Radical SAM domain protein; KEGG: cte:CT0417 AslB/AtsB family protein YP_001997343.1 PFAM: periplasmic binding protein; KEGG: cte:CT0413 iron complex transport system substrate-binding protein YP_001997344.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cte:CT0423 receptor YP_001997345.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0412 iron(III) ABC transporter, ATP-binding protein YP_001997346.1 PFAM: transport system permease protein; inner-membrane translocator; KEGG: cte:CT0411 iron(III) ABC transporter, permease protein YP_001997347.1 PFAM: periplasmic binding protein; KEGG: cte:CT0410 iron(III) ABC transporter, periplasmic iron-binding protein YP_001997348.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001997349.1 Catalyzes the conversion of citrate to isocitrate YP_001997350.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: lsp:Bsph_4692 methyl-accepting chemotaxis protein McpB (H3) YP_001997351.1 KEGG: aav:Aave_4747 hypothetical protein YP_001997352.1 PFAM: CheW domain protein; KEGG: mem:Memar_1544 CheW protein YP_001997353.1 PFAM: response regulator receiver; KEGG: cyt:cce_0289 two-component response regulator YP_001997354.1 PFAM: response regulator receiver; KEGG: lci:LCK_00185 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_001997356.1 PFAM: beta-lactamase domain protein; KEGG: plt:Plut_0970 metal-dependent hydrolase YP_001997357.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001997358.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001997359.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: cte:CT1165 16S rRNA processing protein RimM YP_001997360.1 PFAM: ribosomal protein S16; KEGG: cph:Cpha266_1524 30S ribosomal protein S16 YP_001997361.1 KEGG: pvi:Cvib_0936 signal recognition particle subunit FFH/SRP54 (SRP54); TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001997363.1 PFAM: peptidase M16 domain protein; KEGG: fjo:Fjoh_1544 peptidase M16 domain protein YP_001997364.1 PFAM: peptidase M16 domain protein; KEGG: gfo:GFO_3583 secreted peptidase, family M16 YP_001997365.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1866 ABC transporter related YP_001997366.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_4028 diguanylate cyclase YP_001997367.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mma:MM_3371 hypothetical protein YP_001997369.1 catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate YP_001997370.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: cte:CT1317 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_001997371.1 TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: pvi:Cvib_1048 queuosine biosynthesis protein YP_001997372.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ath:AT3G04240 SEC (SECRET AGENT); transferase, transferring glycosyl groups YP_001997373.1 PFAM: thymidylate kinase; KEGG: cte:CT1313 thymidylate kinase YP_001997374.1 PFAM: glycosyl transferase group 1; KEGG: pvi:Cvib_0689 glycosyl transferase, group 1 YP_001997375.1 PFAM: glycosyl transferase group 1; KEGG: pvi:Cvib_0692 glycosyl transferase, group 1 YP_001997376.1 PFAM: glycosyl transferase family 9; KEGG: nfa:nfa23990 glycosyltransferase YP_001997377.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_0672 ABC transporter related YP_001997378.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sru:SRU_0634 NAD dependent epimerase/dehydratase family protein YP_001997379.1 KEGG: fps:FP0227 hypothetical protein YP_001997380.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: mpt:Mpe_A1413 transmembrane NADH dehydrogenase I (chain K) oxidoreductase protein YP_001997381.1 KEGG: sru:SRU_1445 NADH dehydrogenase I, L subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_001997382.1 KEGG: cau:Caur_1171 PAS sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001997383.1 PFAM: Methicillin resistance protein; KEGG: pdi:BDI_3860 femAB family protein YP_001997384.1 KEGG: gur:Gura_4232 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001997385.1 KEGG: gme:Gmet_3342 proton-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001997386.1 PFAM: protein of unknown function DUF534; KEGG: drm:Dred_2840 protein of unknown function DUF534 YP_001997387.1 PFAM: WD-40 repeat protein; KEGG: mar:MAE_62580 serine/threonine protein kinase YP_001997388.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001997389.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: ana:all4411 Type II restriction DNA methyltransferase YP_001997390.1 KEGG: mar:MAE_58720 hypothetical protein YP_001997391.1 TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: cte:CT0453 molybdenum transport system protein ModD YP_001997392.1 KEGG: cph:Cpha266_1857 hypothetical protein YP_001997393.1 KEGG: cbb:CLD_3316 lipoprotein YP_001997394.1 KEGG: fps:FP2433 protein of unknown function, outer membrane protein YP_001997395.1 KEGG: cte:CT1450 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_001997396.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001997397.1 KEGG: sfu:Sfum_3405 hypothetical protein YP_001997398.1 PFAM: regulatory protein MarR; KEGG: gvi:glr1822 MarR family transcriptional regulatory protein YP_001997399.1 KEGG: sru:SRU_2195 hypothetical protein YP_001997400.1 KEGG: sru:SRU_2320 magnesium chelatase, subunit ChlI family YP_001997401.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: tex:Teth514_1074 oxidoreductase domain protein YP_001997402.1 PFAM: Hpt domain protein; KEGG: mgm:Mmc1_1510 Hpt protein YP_001997403.1 PFAM: UspA domain protein; KEGG: plt:Plut_1294 universal stress protein family YP_001997404.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cph:Cpha266_1719 thioredoxin YP_001997405.1 PFAM: OsmC family protein; KEGG: cph:Cpha266_1720 OsmC family protein YP_001997406.1 KEGG: lbi:LEPBI_I1485 hypothetical protein; signal peptide YP_001997407.1 PFAM: glycosyl transferase family 2; KEGG: cyt:cce_2819 glycosyl transferase, family 2 YP_001997408.1 PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3806 glycosyl transferase, family 2 YP_001997409.1 KEGG: sat:SYN_00822 glycosyltransferase involved in cell wall biogenesis YP_001997410.1 PFAM: glycosyl transferase group 1; KEGG: gsu:GSU3023 glycosyl transferase, group 1/2 family protein YP_001997411.1 TIGRFAM: methyltransferase FkbM family; KEGG: lbl:LBL_1227 glycosyltransferase YP_001997412.1 KEGG: pfo:PflO1_4047 hypothetical protein YP_001997413.1 TIGRFAM: methyltransferase FkbM family; KEGG: gfo:GFO_0547 FkbM family methyltransferase YP_001997414.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chu:CHU_0848 polysaccharide ABC transporter, ATPase component YP_001997416.1 PFAM: ABC-2 type transporter; KEGG: cau:Caur_2106 ABC-2 type transporter YP_001997417.1 KEGG: msi:Msm_0282 adhesin-like protein YP_001997418.1 KEGG: gur:Gura_1670 non-specific protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein YP_001997419.1 PFAM: conserved hypothetical protein; KEGG: sru:SRU_1570 hypothetical protein YP_001997420.1 PFAM: glycosyl transferase family 2; KEGG: cch:Cag_1316 glycosyl transferase YP_001997421.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_001997422.1 PFAM: UbiA prenyltransferase; KEGG: mst:Msp_0634 prenyltransferase YP_001997423.1 KEGG: dol:Dole_0327 exopolyphosphatase-related protein YP_001997424.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: aba:Acid345_0504 response regulator receiver modulated metal dependent phosphohydrolase YP_001997425.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bha:BH3408 thioredoxin reductase YP_001997426.1 PFAM: OmpA/MotB domain protein; KEGG: sus:Acid_0513 OmpA/MotB domain protein YP_001997427.1 PFAM: Phosphoesterase HXTX; KEGG: cau:Caur_0301 2'-5' RNA ligase YP_001997428.1 PFAM: carboxyl transferase; KEGG: gfo:GFO_0976 acyl-CoA carboxylase carboxyl transferase beta subunit YP_001997429.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_001997430.1 KEGG: hau:Haur_4643 hypothetical protein YP_001997431.1 KEGG: chu:CHU_1567 hypothetical protein YP_001997432.1 KEGG: sru:SRU_p0004 cellulose 1,4-beta-cellobiosidase-like protein YP_001997433.1 KEGG: ppr:PBPRA0349 periplasmic protein involved in polysaccharide export YP_001997436.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001997437.1 PFAM: Sigma-70 region 4 type 2; KEGG: cph:Cpha266_1413 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001997438.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: cte:CT1258 ADP-L-glycero-D-mannoheptose-6-epimerase YP_001997439.1 PFAM: PhoH family protein; KEGG: cph:Cpha266_1415 PhoH family protein YP_001997440.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chu:CHU_2228 ferredoxin 2 with 4Fe-4S binding domain YP_001997441.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gfo:GFO_1472 ferredoxin-like protein YP_001997442.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: cvi:CV_1816 hypothetical protein YP_001997444.1 KEGG: cte:CT1768 hypothetical protein YP_001997445.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; KEGG: cte:CT1712 para-aminobenzoate synthetase YP_001997446.1 KEGG: rrs:RoseRS_3098 hypothetical protein YP_001997447.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: fjo:Fjoh_2114 redoxin domain protein YP_001997448.1 PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: cph:Cpha266_1306 ATP citrate lyase subunit 2 YP_001997449.1 PFAM: ATP-grasp domain protein; KEGG: cte:CT1089 citrate lyase, subunit 1 YP_001997451.1 KEGG: cph:Cpha266_0971 proton-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001997452.1 KEGG: cch:Cag_0643 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001997453.1 KEGG: cte:CT0774 NADH dehydrogenase I subunit 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_001997454.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: plt:Plut_0750 NADH dehydrogenase I subunit 4L YP_001997455.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: plt:Plut_0749 NADH dehydrogenase I subunit 6 YP_001997456.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0966 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001997457.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: pvi:Cvib_1089 respiratory-chain NADH dehydrogenase, subunit 1 YP_001997458.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: pvi:Cvib_1090 NADH dehydrogenase (ubiquinone) YP_001997459.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: cch:Cag_0636 NADH (or F420H2) dehydrogenase, subunit C YP_001997460.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_001997461.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: plt:Plut_0743 NADH dehydrogenase I, subunit 3 YP_001997463.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: sto:STS230 pterin-4-alpha-carbinolamine dehydratase YP_001997464.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mar:MAE_03610 tetratricopeptide repeat protein YP_001997465.1 kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth YP_001997466.1 PFAM: ferrochelatase; KEGG: plt:Plut_0740 ferrochelatase YP_001997467.1 PFAM: KWG Leptospira repeat protein; KEGG: lbi:LEPBI_I3169 hypothetical protein; signal peptide YP_001997468.1 PFAM: Nucleotidyl transferase; KEGG: cph:Cpha266_0923 nucleotidyl transferase YP_001997469.1 PFAM: fatty acid hydroxylase; KEGG: hch:HCH_01597 sterol desaturase YP_001997470.1 PFAM: N-acetylneuraminic acid synthase domain; KEGG: cte:CT0825 sialic acid synthase YP_001997471.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: cch:Cag_1073 phosphatase KdsC YP_001997472.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aba:Acid345_2846 short-chain dehydrogenase/reductase SDR YP_001997473.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: lil:LA1413 hypothetical protein YP_001997474.1 PFAM: major facilitator superfamily MFS_1; KEGG: cph:Cpha266_1111 major facilitator superfamily MFS_1 YP_001997475.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: scl:sce1033 1-acylglycerol-3-phosphate O-acyltransferase YP_001997476.1 PFAM: manganese and iron superoxide dismutase; KEGG: dsy:DSY4123 hypothetical protein YP_001997477.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cte:CT0991 oxidoreductase, Gfo/Idh/MocA family YP_001997478.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); asparagine synthase family amidotransferase; PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: met:M446_2680 asparagine synthase family amidotransferase YP_001997479.1 KEGG: mes:Meso_2468 GCN5-related N-acetyltransferase; TIGRFAM: GNAT-family acetyltransferase TIGR03103; PFAM: GCN5-related N-acetyltransferase YP_001997480.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Fibronectin type III domain protein; KEGG: pdi:BDI_3426 calcium dependent protease YP_001997481.1 TIGRFAM: hydrolase, peptidase M42 family; PFAM: peptidase M42 family protein; KEGG: met:M446_2678 hydrolase, peptidase M42 family YP_001997482.1 PFAM: membrane protein of unknown function; KEGG: gfo:GFO_0221 membrane protein containing DUF360 YP_001997483.1 molecular chaperone YP_001997484.1 PFAM: PspA/IM30 family protein; KEGG: mgm:Mmc1_3175 phage shock protein A, PspA YP_001997485.1 KEGG: mgm:Mmc1_3176 hypothetical protein YP_001997486.1 PFAM: heat shock protein DnaJ domain protein; KEGG: abu:Abu_1294 co-chaperone and heat shock protein DnaJ YP_001997487.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: SH3 domain protein; Tetratricopeptide domain protein; KEGG: fjo:Fjoh_0723 TPR repeat-containing protein YP_001997488.1 KEGG: pdi:BDI_0951 conserved hypothetical protein BatD YP_001997489.1 KEGG: aba:Acid345_1478 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_001997490.1 KEGG: pdi:BDI_0950 conserved hypothetical protein BatC YP_001997491.1 PFAM: von Willebrand factor type A; KEGG: bfs:BF2500 aerotolerance-related membrane protein YP_001997492.1 PFAM: protein of unknown function DUF45; KEGG: plt:Plut_0661 zinc protease YP_001997493.1 PFAM: regulatory protein MarR; KEGG: slo:Shew_3148 transcriptional regulator, MarR family YP_001997494.1 KEGG: mlo:mlr5153 hypothetical protein YP_001997495.1 KEGG: bur:Bcep18194_B0764 antibiotic biosynthesis monooxygenase YP_001997496.1 KEGG: cch:Cag_0159 hypothetical protein YP_001997497.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cch:Cag_0899 5-formyltetrahydrofolate cyclo-ligase YP_001997498.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_001997499.1 KEGG: cch:Cag_0901 ribose/galactose isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase YP_001997500.1 PFAM: CBS domain containing protein; KEGG: sru:SRU_2411 acetoin utilization protein YP_001997501.1 TIGRFAM: photosynthetic complex assembly protein 2; KEGG: hha:Hhal_1628 hypothetical protein YP_001997502.1 TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cte:CT1270 bacteriochlorophyll synthase, 34 kDa subunit YP_001997503.1 PFAM: Abortive infection protein; KEGG: bbt:BBta_3181 membrane protein of unknown function with protease domain YP_001997504.1 PFAM: response regulator receiver; KEGG: ppd:Ppro_0716 signal transduction histidine kinase, nitrogen specific, NtrB YP_001997505.1 KEGG: deh:cbdb_A1591 sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001997506.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cya:CYA_1949 AhpC/TSA family protein YP_001997507.1 KEGG: sde:Sde_1084 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein YP_001997508.1 KEGG: nmu:Nmul_A2648 hypothetical protein YP_001997509.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: pvi:Cvib_1256 6-pyruvoyl tetrahydropterin synthase and hypothetical protein YP_001997510.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: dol:Dole_2579 methyltransferase type 11 YP_001997511.1 KEGG: cph:Cpha266_1071 hypothetical protein YP_001997512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: aba:Acid345_0185 multi sensor diguanylate cyclase / metal dependent phosphohydrolase YP_001997513.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cpf:CPF_0900 ethanolamine utilization protein EutN YP_001997514.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: sus:Acid_0323 ethanolamine utilization protein EutN/carboxysome structural protein CcmL YP_001997515.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: cph:Cpha266_2028 RNA polymerase, sigma 32 subunit, RpoH YP_001997516.1 PFAM: peptidase M16 domain protein; KEGG: gfo:GFO_3584 secreted peptidase, family M16 YP_001997517.1 PFAM: cation transporter; KEGG: gfo:GFO_2532 V-type sodium ATP synthase subunit J YP_001997519.1 KEGG: plt:Plut_0631 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001997520.1 PFAM: extracellular solute-binding protein family 5; KEGG: chu:CHU_3498 oligopeptide ABC transporter, solute-binding protein YP_001997521.1 PFAM: response regulator receiver; KEGG: pcr:Pcryo_2288 response regulator receiver domain protein (CheY-like) YP_001997522.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cau:Caur_0943 heme exporter protein CcmA YP_001997523.1 KEGG: pvi:Cvib_0574 RNAse R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein YP_001997524.1 PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; WD40 domain protein beta Propeller; KEGG: chu:CHU_3233 conserved hypothetical protein with multiple WD40-like repeats YP_001997525.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_4823 helix-turn-helix-domain containing protein, AraC type YP_001997526.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pdi:BDI_3481 TonB dependent outer membrane protein YP_001997528.1 PFAM: Methyltransferase type 12; KEGG: cph:Cpha266_0562 methyltransferase type 12 YP_001997529.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_001997530.1 PFAM: protein of unknown function DUF187; KEGG: bpu:BPUM_1787 hypothetical protein YP_001997531.1 KEGG: plt:Plut_1628 photosystem P840 reaction center cytochrome c-551 YP_001997532.1 KEGG: cte:CT1667 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2 YP_001997533.1 PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; KEGG: cph:Cpha266_1063 biotin/lipoyl attachment domain-containing protein YP_001997534.1 PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: cph:Cpha266_1064 carbamoyl-phosphate synthase L chain, ATP-binding YP_001997535.1 KEGG: vei:Veis_3132 hypothetical protein YP_001997536.1 PFAM: Domain of unknown function DUF1828; Domain of unknown function DUF1829; KEGG: vei:Veis_3133 Lj965 prophage protein YP_001997537.1 PFAM: protein of unknown function UPF0047; KEGG: rci:RRC22 hypothetical protein YP_001997538.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: cch:Cag_1746 MesJ protein YP_001997539.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mll8174 dehydrogenase YP_001997540.1 PFAM: Class I peptide chain release factor; KEGG: gfo:GFO_3056 protein containing peptidyl-tRNA hydrolase domain YP_001997541.1 PFAM: GCN5-related N-acetyltransferase; KEGG: esa:ESA_01270 hypothetical protein YP_001997542.1 PFAM: sodium/hydrogen exchanger; KEGG: rci:RRC456 Na(+)/H(+) antiporter YP_001997543.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pvi:Cvib_0174 MscS mechanosensitive ion channel YP_001997544.1 KEGG: plt:Plut_0321 methylpurine-DNA glycosylase (MPG); TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG) YP_001997545.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pvi:Cvib_0388 chromosome segregation ATPase YP_001997546.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: plt:Plut_0323 ParB-like partition protein YP_001997547.1 KEGG: fjo:Fjoh_0204 hypothetical protein YP_001997548.1 PFAM: dihydrodipicolinate reductase; KEGG: cte:CT1850 dihydrodipicolinate reductase YP_001997549.1 KEGG: cte:CT1849 hypothetical protein YP_001997550.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: cau:Caur_2592 PucC protein YP_001997551.1 KEGG: noc:Noc_2710 hypothetical protein YP_001997554.1 KEGG: gfo:GFO_0037 membrane protein containing adenylate/guanylate cyclase catalytic domain YP_001997555.1 KEGG: ter:Tery_1895 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001997556.1 PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: mhu:Mhun_0147 malate dehydrogenase (oxaloacetate decarboxylating) YP_001997557.1 KEGG: cph:Cpha266_0972 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein YP_001997558.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: cph:Cpha266_0973 nickel-dependent hydrogenase, large subunit YP_001997559.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: cph:Cpha266_0974 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_001997560.1 PFAM: glycosyl transferase group 1; KEGG: ter:Tery_1099 glycosyl transferase, group 1 YP_001997561.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001997562.1 KEGG: rxy:Rxyl_2133 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_001997563.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sru:SRU_0361 alpha-amylase YP_001997565.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cno:NT01CX_2343 cation-transporting ATPase, E1-E2 family YP_001997567.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: chu:CHU_1649 peptide methionine sulfoxide reductase YP_001997568.1 PFAM: Alg9 family protein mannosyltransferase; KEGG: sus:Acid_4354 Alg9 family protein mannosyltransferase YP_001997569.1 PFAM: glycerate kinase; KEGG: shn:Shewana3_2685 glycerate kinase YP_001997570.1 KEGG: bvu:BVU_2751 hypothetical protein YP_001997571.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bvu:BVU_2750 hypothetical protein YP_001997574.1 PFAM: RES domain protein; KEGG: reh:H16_B1263 hypothetical membrane protein YP_001997575.1 PFAM: conserved hypothetical protein; KEGG: gfo:GFO_2681 hypothetical protein YP_001997576.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: pvi:Cvib_1529 succinyl-CoA synthetase (ADP-forming) alpha subunit YP_001997577.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001997578.1 KEGG: cch:Cag_0464 di-trans-poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_001997579.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pvi:Cvib_1532 surface antigen (D15) YP_001997580.1 PFAM: Silent information regulator protein Sir2; KEGG: gfo:GFO_1094 NAD-dependent deacetylase YP_001997581.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001997583.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: chu:CHU_2522 scaffold protein for iron-sulphur cluster assembly YP_001997584.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: rfr:Rfer_2178 scaffold protein YP_001997585.1 TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: aba:Acid345_0484 aminotransferase, class V YP_001997586.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pvi:Cvib_0582 transcriptional regulator, BadM/Rrf2 family YP_001997587.1 PFAM: alpha/beta hydrolase fold; KEGG: cch:Cag_1299 dihydrolipoamide acetyltransferase YP_001997588.1 KEGG: noc:Noc_1700 PAS sensor, signal transduction histidine kinase YP_001997589.1 PFAM: response regulator receiver; transcriptional activator domain; KEGG: cko:CKO_00549 hypothetical protein YP_001997590.1 PFAM: regulatory protein MerR; KEGG: cte:CT1500 transcriptional regulator, MerR family YP_001997591.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sru:SRU_1854 dTDP-4-dehydrorhamnose reductase YP_001997592.1 PFAM: WD-40 repeat protein; KEGG: ana:alr3466 WD-40 repeat protein YP_001997593.1 PFAM: UvrD/REP helicase; KEGG: cch:Cag_1415 DNA helicase II YP_001997594.1 KEGG: rci:LRC522 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001997595.1 KEGG: cyt:cce_1878 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001997596.1 KEGG: ava:Ava_3003 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001997597.1 KEGG: cph:Cpha266_1983 hypothetical protein YP_001997598.1 KEGG: cph:Cpha266_1091 hypothetical protein YP_001997599.1 KEGG: dps:DP2388 hypothetical protein YP_001997600.1 KEGG: dps:DP2388 hypothetical protein YP_001997601.1 KEGG: cph:Cpha266_0180 hypothetical protein YP_001997602.1 PFAM: acriflavin resistance protein; KEGG: cch:Cag_0123 AcrB/AcrD/AcrF family protein YP_001997603.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: fps:FP1810 probable membrane fusion efflux protein precursor YP_001997604.1 PFAM: outer membrane efflux protein; KEGG: cte:CT2049 LipD protein YP_001997605.1 KEGG: mgm:Mmc1_0772 hypothetical protein YP_001997606.1 PFAM: glycosyl transferase group 1; KEGG: ppd:Ppro_2103 glycosyl transferase, group 1 YP_001997607.1 PFAM: LmbE family protein; KEGG: sth:STH2747 hypothetical protein YP_001997608.1 KEGG: gur:Gura_2616 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001997609.1 KEGG: rxy:Rxyl_3205 tetratricopeptide TPR_2 YP_001997610.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pme:NATL1_16171 hypothetical protein YP_001997612.1 PFAM: glycosyl transferase group 1; KEGG: bvu:BVU_3925 glycosyltransferase family 4 YP_001997613.1 PFAM: extracellular solute-binding protein family 5; KEGG: cte:CT1420 peptide ABC transporter, periplasmic peptide-binding protein YP_001997614.1 PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: plt:Plut_0408 2-vinyl bacteriochlorophyllide hydratase YP_001997615.1 TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cph:Cpha266_1791 chlorophyll synthesis pathway, BchC YP_001997616.1 KEGG: cte:CT1423 chlorophyllide reductase, BchX subunit; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; Sigma-70 region 4 type 2 YP_001997617.1 PFAM: regulatory protein TetR; KEGG: pca:Pcar_3096 TetR family transcriptional regulator YP_001997618.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dsy:DSY3360 hypothetical protein YP_001997619.1 PFAM: acriflavin resistance protein; KEGG: hmo:HM1_0483 acriflavin resistance protein YP_001997620.1 PFAM: outer membrane efflux protein; KEGG: cch:Cag_0627 outer membrane efflux protein YP_001997621.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pdi:BDI_1443 TonB-dependent outer membrane receptor YP_001997622.1 KEGG: sfu:Sfum_3740 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001997623.1 PFAM: protein of unknown function DUF77; KEGG: rba:RB339 hypothetical protein YP_001997624.1 PFAM: glycosyl transferase group 1; KEGG: mem:Memar_1604 glycosyl transferase, group 1 YP_001997625.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: cph:Cpha266_2739 phosphoesterase, PA-phosphatase related YP_001997626.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: pvi:Cvib_1771 protein translocase subunit YidC YP_001997627.1 PFAM: protein of unknown function DUF37; KEGG: plt:Plut_2130 protein of unknown function DUF37 YP_001997628.1 TIGRFAM: ribonuclease P protein component; KEGG: cte:CT0004 ribonuclease P protein component YP_001997629.1 PFAM: ribosomal protein L34; KEGG: cch:Cag_2033 50S ribosomal protein L34