-- dump date 20140619_041649 -- class Genbank::CDS -- table cds_note -- id note NP_899671.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0593 NP_899672.1 binds the polymerase to DNA and acts as a sliding clamp NP_899673.2 negatively supercoils closed circular double-stranded DNA NP_899674.1 identified by sequence similarity; ORF located using Blastx/COG2801 NP_899675.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0863 NP_899676.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1401 NP_899677.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1700 NP_899682.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3673 NP_899686.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3501 NP_899688.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0439 NP_899689.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0825/TC:3.B.1.1.2 NP_899690.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.2.7 NP_899691.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0156 NP_899693.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3501 NP_899694.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0739 NP_899701.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_899702.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1051 NP_899703.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0462 NP_899704.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1488 NP_899708.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0079 NP_899710.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly NP_899711.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0730 NP_899712.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0491 NP_899713.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0790 NP_899714.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1045 NP_899715.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3491 NP_899716.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2199 NP_899717.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1846 NP_899718.1 identified by sequence similarity; ORF located using Blastx/COG0477/TC:2.A.1.3.12 NP_899719.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_899720.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3071 NP_899721.1 identified by sequence similarity; ORF located using Blastx/COG2959 NP_899722.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis NP_899724.2 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis NP_899725.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate NP_899726.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2234 NP_899727.1 identified by sequence similarity; ORF located using Blastx/COG3227 NP_899729.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate NP_899730.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_899731.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_899732.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0697/TC:2.A.7.3.2 NP_899733.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_899735.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0553 NP_899737.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway NP_899738.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2274/TC:3.A.1.110.2 NP_899739.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0845/TC:8.A.1.3.1 NP_899742.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0641 NP_899743.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2204 NP_899744.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0642 NP_899745.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling NP_899746.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2153 NP_899747.1 identified by sequence similarity; ORF located using Blastx/COG1629/TC:1.B.14.1.6 NP_899749.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins NP_899750.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 NP_899751.1 identified by sequence similarity; ORF located using Blastx/COG2863 NP_899752.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2391 NP_899753.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2391 NP_899754.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0640 NP_899755.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0599 NP_899756.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1032 NP_899757.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0491 NP_899758.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3695 NP_899760.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/TC:1.B.10.2.1 NP_899761.1 identified by sequence similarity; ORF located using Blastx/COG0745 NP_899762.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0557 NP_899763.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0318/TC:9.B.17.1.4 NP_899764.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1639 NP_899765.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0840 NP_899768.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_899769.1 identified by sequence similarity; ORF located using Blastx/TC:3.D.2.2.1 NP_899770.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3288/TC:3.D.2.2.1 NP_899771.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3288/TC:3.D.2.2.1 NP_899772.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834 NP_899773.1 identified by sequence similarity; ORF located using Blastx/COG2972 NP_899774.1 identified by sequence similarity; ORF located using Blastx/COG3548 NP_899775.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_899776.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0500 NP_899777.1 identified by sequence similarity; ORF located using Blastx/TC:2.C.1.2.1 NP_899778.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0810/TC:2.C.1.1.1 NP_899779.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA NP_899780.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2885/TC:1.B.6.1.2 NP_899781.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1729 NP_899782.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1349 NP_899783.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1794 NP_899784.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2200 NP_899785.1 catalyzes the formation of arginine from (N-L-arginino)succinate NP_899786.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834 NP_899787.1 identified by sequence similarity; ORF located using Blastx/COG1126 NP_899788.1 identified by sequence similarity; ORF located using Blastx/COG0765/TC:3.A.1.3.4 NP_899789.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0765/TC:3.A.1.3.4 NP_899790.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834/TC:3.A.1.3.4 NP_899791.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin NP_899792.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.2.22 NP_899794.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0424 NP_899795.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1530 NP_899796.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1943 NP_899797.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2131 NP_899800.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0006 NP_899801.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3135/TC:2.A.46.1.1 NP_899803.1 identified by sequence similarity; ORF located using Blastx/COG1167 NP_899804.1 identified by sequence similarity; ORF located using Blastx/COG0454 NP_899805.1 identified by sequence similarity; ORF located using Blastx/COG0579 NP_899806.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1349 NP_899807.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2200 NP_899811.1 identified by sequence similarity; ORF located using Blastx/COG2814/TC:2.A.1.2.14 NP_899812.1 identified by sequence similarity; ORF located using Blastx/COG0583 NP_899813.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0800 NP_899814.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate NP_899815.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate NP_899816.1 identified by sequence similarity; ORF located using Blastx/COG0363 NP_899817.1 identified by sequence similarity; ORF located using Blastx/COG0837 NP_899818.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1737 NP_899819.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family NP_899820.1 identified by sequence similarity; ORF located using Blastx/COG0352 NP_899821.1 identified by sequence similarity; ORF located using Blastx/COG0351 NP_899822.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1773 NP_899823.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0501 NP_899825.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1981 NP_899826.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2954 NP_899828.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2041 NP_899830.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1266 NP_899831.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0041 NP_899832.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway NP_899833.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0346 NP_899835.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase NP_899836.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1670 NP_899837.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2267 NP_899838.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_899839.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0446 NP_899840.1 identified by sequence similarity; ORF located using Blastx/COG0500 NP_899843.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive NP_899844.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1734 NP_899845.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2010 NP_899846.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0762 NP_899847.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0345 NP_899848.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0325 NP_899849.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2805 NP_899850.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2805 NP_899851.1 identified by sequence similarity; ORF located using Blastx NP_899852.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0457 NP_899853.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1514 NP_899854.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2013 NP_899855.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0314 NP_899856.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1977 NP_899857.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis NP_899858.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1280/TC:2.A.76.1.1 NP_899859.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway NP_899860.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate NP_899861.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase NP_899863.1 identified by sequence similarity; ORF located using Blastx NP_899864.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0625 NP_899865.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1846 NP_899866.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2378 NP_899868.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3174 NP_899873.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity NP_899875.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0210 NP_899876.1 identified by sequence similarity; ORF located using Blastx/COG0457 NP_899877.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3279 NP_899878.1 identified by sequence similarity; ORF located using Blastx/COG2199 NP_899879.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1764 NP_899880.1 identified by sequence similarity; ORF located using Blastx NP_899882.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3150 NP_899883.1 identified by sequence similarity; ORF located using Blastx/COG0604 NP_899886.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0745 NP_899887.1 identified by sequence similarity; ORF located using Blastx NP_899888.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_899889.1 identified by sequence similarity; ORF located using Blastx/TC:2.A.7.3.4 NP_899890.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0350 NP_899893.1 identified by sequence similarity; ORF located using Blastx NP_899894.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0834/TC:3.A.1.3.10 NP_899895.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A NP_899896.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0859 NP_899898.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0463 NP_899899.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1619 NP_899900.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_899901.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1253/TC:9.B.37.2.1 NP_899902.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine NP_899903.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0607 NP_899904.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2518 NP_899905.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine NP_899909.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0840 NP_899910.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2199 NP_899911.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1762 NP_899915.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3214 NP_899916.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0346 NP_899919.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0469 NP_899921.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP NP_899922.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0580/TC:1.A.8.2.1 NP_899923.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell NP_899924.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane NP_899926.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3382 NP_899927.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_899928.1 identified by sequence similarity; ORF located using Blastx/COG1130 NP_899929.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1472 NP_899930.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0395/TC:3.A.1.1.3 NP_899931.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1175 NP_899932.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1653/TC:3.A.1.1.3 NP_899933.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/TC:1.B.25.1.1 NP_899935.1 identified by sequence similarity; ORF located using Blastx/COG0840 NP_899936.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0826 NP_899938.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_899940.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_899941.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0491 NP_899942.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_899943.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1524 NP_899944.1 identified by sequence similarity; ORF located using Blastx/COG2207 NP_899946.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1359 NP_899948.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0563 NP_899951.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3238 NP_899956.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2719 NP_899959.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0625 NP_899960.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2249 NP_899961.1 identified by sequence similarity; ORF located using Blastx/COG1733 NP_899962.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate NP_899963.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1694 NP_899964.1 Modulates the activities of several enzymes which are inactive in their acetylated form NP_899965.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0668/TC:1.A.23.2.1 NP_899967.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1028 NP_899968.1 identified by sequence similarity; ORF located using Blastx/COG0583 NP_899969.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_899970.1 identified by sequence similarity; ORF located using Blastx/COG1858 NP_899972.1 identified by sequence similarity; ORF located using Blastx NP_899973.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates NP_899974.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2962/TC:2.A.7.7.1 NP_899975.1 identified by sequence similarity; ORF located using Blastx/COG2197 NP_899976.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0845/TC:8.A.1.3.1 NP_899977.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2274/TC:3.A.1.109.1 NP_899978.1 identified by sequence similarity; ORF located using Blastx/COG1538 NP_899979.1 identified by sequence similarity; ORF located using Blastx/COG3672 NP_899980.1 identified by sequence similarity; ORF located using Blastx/COG2199 NP_899981.1 identified by sequence similarity; ORF located using Blastx/COG2931 NP_899984.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1670 NP_899985.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0339 NP_899986.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0625 NP_899988.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0676 NP_899989.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_899990.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2188 NP_899991.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway NP_899992.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0010 NP_899993.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism NP_899995.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2986 NP_899996.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1262 NP_899998.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1943 NP_899999.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0454 NP_900001.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate NP_900003.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_900004.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0500 NP_900005.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2872 NP_900006.1 identified by sequence similarity; ORF located using Blastx/COG0697/TC:2.A.7.11.1 NP_900007.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900009.1 identified by sequence similarity; ORF located using Blastx NP_900010.1 identified by sequence similarity; ORF located using Blastx NP_900011.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900013.1 identified by sequence similarity; ORF located using Blastx/COG3299 NP_900014.1 identified by sequence similarity; ORF located using Blastx NP_900015.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900016.1 identified by sequence similarity; ORF located using Blastx NP_900017.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0840 NP_900018.1 identified by sequence similarity; ORF located using Blastx/COG0741 NP_900019.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900020.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2217 NP_900021.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_900022.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1734 NP_900024.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900026.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2932 NP_900027.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0279 NP_900028.1 identified by sequence similarity; ORF located using Blastx/COG0657 NP_900029.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2206 NP_900030.1 identified by sequence similarity; ORF located using Blastx/COG3240 NP_900031.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1092 NP_900032.1 identified by sequence similarity; ORF located using Blastx/COG3240 NP_900035.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1055/TC:2.A.45.1.1 NP_900036.1 identified by sequence similarity; ORF located using Blastx/COG0483 NP_900037.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1385 NP_900038.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2206 NP_900039.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis NP_900040.1 involved in the allosteric regulation of aspartate carbamoyltransferase NP_900042.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1247 NP_900043.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1432 NP_900044.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834 NP_900046.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3184 NP_900047.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1879/TC:3.A.1.2.1 NP_900048.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3545 NP_900049.1 identified by sequence similarity; ORF located using Blastx/COG1451 NP_900050.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_900053.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0513 NP_900054.1 identified by sequence similarity; ORF located using Blastx/COG0834 NP_900055.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1309 NP_900056.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2202 NP_900057.1 identified by sequence similarity; ORF located using Blastx/COG2202 NP_900059.1 identified by sequence similarity; ORF located using Blastx/COG1187 NP_900060.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2513 NP_900061.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0350 NP_900062.1 identified by sequence similarity; ORF located using Blastx/COG3284 NP_900063.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1012 NP_900064.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0500 NP_900065.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_900066.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2202 NP_900067.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1305 NP_900068.1 identified by sequence similarity; ORF located using Blastx/COG0848/TC:2.C.1.1.1 NP_900069.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0811/TC:2.C.1.2.1 NP_900070.1 identified by sequence similarity; ORF located using Blastx/COG0810/TC:2.C.1.1.1 NP_900071.1 heat shock protein involved in degradation of misfolded proteins NP_900072.1 heat shock protein involved in degradation of misfolded proteins NP_900073.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0477/TC:2.A.1.21.4 NP_900075.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0683/TC:3.A.1.4.1 NP_900076.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900078.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900079.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900080.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3498 NP_900081.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900083.1 identified by sequence similarity; ORF located using Blastx NP_900084.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_900085.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900086.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3500 NP_900087.1 identified by sequence similarity; ORF located using Blastx NP_900088.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900091.1 identified by sequence similarity; ORF located using Blastx/COG3628 NP_900092.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900093.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900098.1 identified by sequence similarity; ORF located using Blastx NP_900099.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900101.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_900103.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1538 NP_900104.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0841/TC:2.A.6.2.7 NP_900105.1 identified by sequence similarity; ORF located using Blastx/COG0845/TC:8.A.1.6.1 NP_900106.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1309 NP_900107.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1131 NP_900108.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0842/TC:3.A.1.102.1 NP_900109.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0271 NP_900110.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active NP_900111.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3621 NP_900113.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2824 NP_900114.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2853 NP_900115.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3113 NP_900116.1 identified by sequence similarity; ORF located using Blastx/COG2854 NP_900117.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1463 NP_900118.1 identified by sequence similarity; ORF located using Blastx/COG0767 NP_900119.1 identified by sequence similarity; ORF located using Blastx/COG1127 NP_900120.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway NP_900121.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate NP_900122.1 identified by sequence similarity; ORF located using Blastx/COG0697/TC:2.A.7.3.4 NP_900123.1 identified by sequence similarity; ORF located using Blastx/COG0454 NP_900125.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2900 NP_900126.1 identified by sequence similarity; ORF located using Blastx/COG2056/TC:2.A.35.1.1 NP_900127.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900128.1 identified by sequence similarity; ORF located using Blastx/COG0824 NP_900129.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0640 NP_900131.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2124 NP_900132.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2329 NP_900133.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0500 NP_900134.1 identified by sequence similarity; ORF located using Blastx NP_900135.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1538/TC:1.B.17.3.5 NP_900136.1 identified by sequence similarity; ORF located using Blastx/COG0845 NP_900137.1 identified by sequence similarity; ORF located using Blastx/COG0532 NP_900140.1 identified by sequence similarity; ORF located using Blastx NP_900141.1 identified by sequence similarity; ORF located using Blastx/COG2333 NP_900142.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0745 NP_900143.1 identified by sequence similarity; ORF located using Blastx/COG0642 NP_900144.1 identified by sequence similarity; ORF located using Blastx/COG0532 NP_900145.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1192/TC:8.A.3.2.1 NP_900146.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_900147.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0514 NP_900148.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate NP_900149.1 identified by sequence similarity; ORF located using Blastx/COG2165 NP_900150.1 identified by sequence similarity; ORF located using Blastx NP_900152.1 identified by sequence similarity; ORF located using Blastx/COG3419 NP_900153.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2165 NP_900154.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2165 NP_900155.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2870 NP_900156.1 identified by sequence similarity; ORF located using Blastx/COG0340 NP_900157.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1521 NP_900158.1 identified by sequence similarity; ORF located using GeneMark/Blastx/TC:1.A.4.1.1 NP_900159.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3619 NP_900160.1 catalyzes the formation of putrescine from agmatine NP_900161.1 identified by sequence similarity; ORF located using Blastx NP_900162.1 identified by sequence similarity; ORF located using Blastx/COG0406 NP_900163.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2038 NP_900164.1 identified by sequence similarity; ORF located using Blastx/COG1629/TC:1.B.14.3.1 NP_900165.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2087 NP_900166.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0614 NP_900168.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3027 NP_900169.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0212 NP_900170.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3326 NP_900172.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2947 NP_900173.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0730 NP_900175.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase NP_900176.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2980 NP_900177.2 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA NP_900178.1 identified by sequence similarity; ORF located using Blastx/COG2814/TC:2.A.1.2.14 NP_900179.1 identified by sequence similarity; ORF located using Blastx/COG0583 NP_900181.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0477/TC:2.A.1.11.1 NP_900183.1 identified by sequence similarity; ORF located using Blastx/COG2274/TC:3.A.1.109.1 NP_900184.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0845/TC:8.A.1.3.1 NP_900185.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0438 NP_900186.1 identified by sequence similarity; ORF located using Blastx/COG2931/TC:1.C.11.1.4 NP_900187.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA NP_900188.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0799 NP_900189.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1057 NP_900190.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0288 NP_900191.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1584/TC:9.B.33.1.1 NP_900194.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0501 NP_900196.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC NP_900197.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA NP_900198.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1249 NP_900200.1 identified by sequence similarity; ORF located using Blastx/COG0431 NP_900201.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_900202.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_900203.1 identified by sequence similarity; ORF located using Blastx/COG0729 NP_900204.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2911 NP_900206.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0642 NP_900209.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1846 NP_900210.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1335 NP_900212.1 identified by sequence similarity; ORF located using Blastx/COG2202 NP_900214.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0042 NP_900215.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2901 NP_900216.1 involved in de novo purine biosynthesis NP_900217.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0151 NP_900220.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0009 NP_900221.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0811/TC:2.C.1.2.1 NP_900222.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0697/TC:2.A.7.3.3 NP_900223.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3397 NP_900224.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3397 NP_900225.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2188 NP_900226.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1820 NP_900227.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2222 NP_900228.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1925/TC:8.A.7.1.1 NP_900229.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1264/TC:4.A.1.1.2 NP_900230.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0057 NP_900231.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1522 NP_900232.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0745 NP_900233.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0642 NP_900234.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate NP_900236.1 identified by sequence similarity; ORF located using Blastx/COG3023 NP_900238.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0147 NP_900243.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3158/TC:2.A.72.1.1 NP_900244.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) NP_900245.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0741 NP_900246.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1914/TC:2.A.55.3.1 NP_900247.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1846 NP_900248.1 Catalyzes the deamination of guanine NP_900249.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2128 NP_900250.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900251.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_900255.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates NP_900256.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0028 NP_900257.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit NP_900258.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis NP_900261.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine NP_900262.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_900263.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0745 NP_900264.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0642 NP_900265.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis NP_900268.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0132 NP_900269.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1622/TC:3.D.4.7.1 NP_900270.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0843/TC:3.D.4.6.1 NP_900271.1 involved in the insertion of copper into subunit I of cytochrome C oxidase NP_900273.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1845/TC:3.D.4.7.1 NP_900275.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900276.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1612 NP_900277.1 converts protoheme IX and farnesyl diphosphate to heme O NP_900278.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1999 NP_900279.1 identified by sequence similarity; ORF located using Blastx NP_900280.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ NP_900281.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer NP_900282.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900283.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis NP_900284.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis NP_900286.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide NP_900287.2 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide NP_900288.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase NP_900290.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers NP_900291.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis NP_900292.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0537 NP_900293.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes NP_900294.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1826/TC:2.A.64.1.1 NP_900295.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0805/TC:2.A.64.1.1 NP_900296.1 identified by sequence similarity; ORF located using Blastx/COG3308 NP_900297.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_900298.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0084 NP_900300.1 identified by sequence similarity; ORF located using Blastx/COG1132/TC:3.A.1.109.2 NP_900301.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1132/TC:3.A.1.109.2 NP_900302.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900303.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0838/TC:3.D.1.2.1 NP_900311.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900316.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900318.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3311 NP_900321.1 identified by sequence similarity; ORF located using Blastx/COG0582 NP_900322.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0313 NP_900323.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3107 NP_900324.1 identified by sequence similarity; ORF located using Blastx/COG0792 NP_900325.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate NP_900326.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2823 NP_900327.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2200 NP_900329.1 identified by sequence similarity; ORF located using Blastx/COG1720 NP_900330.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3176 NP_900331.2 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs NP_900332.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA NP_900333.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1192/TC:8.A.3.3.2 NP_900334.1 identified by sequence similarity; ORF located using Blastx/COG1475 NP_900336.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 NP_900337.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0636/TC:3.A.2.1.1 NP_900338.1 identified by sequence similarity; ORF located using Blastx/COG0711 NP_900339.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0712 NP_900340.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit NP_900341.2 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit NP_900342.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit NP_900343.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane NP_900344.1 identified by sequence similarity; ORF located using Blastx/COG1207 NP_900345.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900346.1 identified by sequence similarity; ORF located using Blastx/COG1349 NP_900347.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source NP_900349.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2207 NP_900356.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3271/TC:3.A.1.110.2 NP_900358.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2204 NP_900360.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0451 NP_900361.1 identified by sequence similarity; ORF located using Blastx NP_900362.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.3.17 NP_900363.1 identified by sequence similarity; ORF located using Blastx/COG0583 NP_900364.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1752 NP_900365.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate NP_900366.1 identified by sequence similarity; ORF located using Blastx/COG0583 NP_900367.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0104 NP_900369.1 identified by sequence similarity; ORF located using Blastx/COG0583 NP_900370.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2814 NP_900371.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid NP_900372.1 identified by sequence similarity; ORF located using Blastx NP_900373.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1296/TC:2.A.78.1.1 NP_900375.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0545 NP_900378.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.3.2 NP_900379.1 identified by sequence similarity; ORF located using Blastx/COG1566/TC:8.A.1.1.1 NP_900380.1 identified by sequence similarity; ORF located using Blastx/COG1538/TC:1.B.17.3.2 NP_900381.1 identified by sequence similarity; ORF located using Blastx/COG1309 NP_900383.1 identified by sequence similarity; ORF located using Blastx NP_900384.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2910 NP_900385.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_900386.1 identified by sequence similarity; ORF located using Blastx/COG0583 NP_900388.1 identified by sequence similarity; ORF located using Blastx NP_900389.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.3.10 NP_900390.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_900391.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900392.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900393.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900394.1 identified by sequence similarity; ORF located using Blastx NP_900397.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900403.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900407.1 identified by sequence similarity; ORF located using Blastx/COG1595 NP_900408.1 identified by sequence similarity; ORF located using Blastx/COG0664 NP_900409.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0627 NP_900410.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1062 NP_900411.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_900412.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900414.1 identified by sequence similarity; ORF located using Blastx/COG3152 NP_900415.1 identified by sequence similarity; ORF located using Blastx NP_900417.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0451 NP_900418.1 identified by sequence similarity; ORF located using Blastx/COG0223 NP_900419.1 identified by sequence similarity; ORF located using Blastx/COG0463 NP_900420.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0399 NP_900421.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0697/TC:2.A.7.1.3 NP_900422.1 identified by sequence similarity; ORF located using Blastx/COG1807 NP_900427.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis NP_900429.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1647 NP_900430.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0642 NP_900431.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0745 NP_900432.1 identified by sequence similarity; ORF located using Blastx/COG1966 NP_900433.1 identified by sequence similarity; ORF located using Blastx/COG2855 NP_900434.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_900436.1 identified by sequence similarity; ORF located using Blastx/COG0477/TC:2.A.1.3.2 NP_900437.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1566/TC:8.A.1.1.1 NP_900438.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1538 NP_900439.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1846 NP_900440.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1393 NP_900441.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.2.7 NP_900442.1 identified by sequence similarity; ORF located using Blastx/COG3206/TC:8.A.3.3.2 NP_900443.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1596/TC:1.B.18.1.2 NP_900444.1 identified by sequence similarity; ORF located using Blastx NP_900446.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine NP_900448.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1611 NP_900449.1 identified by sequence similarity; ORF located using Blastx/COG0258 NP_900453.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.25.2 NP_900455.1 identified by sequence similarity; ORF located using Blastx/COG0500 NP_900456.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine NP_900458.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1242 NP_900459.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ NP_900460.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme NP_900461.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2606 NP_900462.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834 NP_900463.1 identified by sequence similarity; ORF located using Blastx/COG0348 NP_900464.1 identified by sequence similarity; ORF located using Blastx/COG0672/TC:9.A.10.1.1 NP_900466.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3470 NP_900467.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0367 NP_900468.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.35.1 NP_900469.1 identified by sequence similarity; ORF located using Blastx/COG2207 NP_900470.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0747/TC:3.A.1.5.1 NP_900471.1 identified by sequence similarity; ORF located using Blastx/COG0477 NP_900473.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine NP_900474.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2175 NP_900475.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0332 NP_900476.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900477.1 identified by sequence similarity; ORF located using Blastx/COG1541 NP_900478.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2130 NP_900479.1 identified by sequence similarity; ORF located using Blastx/COG0655 NP_900480.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; this protein contains a C-terminal extension of unknown function NP_900481.1 identified by sequence similarity; ORF located using Blastx NP_900482.1 identified by sequence similarity; ORF located using Blastx/COG2199 NP_900483.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0007 NP_900484.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2893 NP_900485.1 identified by sequence similarity; ORF located using Blastx/COG1925 NP_900486.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1080/TC:8.A.7.1.1 NP_900487.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0438 NP_900488.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0463 NP_900489.1 identified by sequence similarity; ORF located using Blastx/COG0451 NP_900490.1 identified by sequence similarity; ORF located using Blastx/COG3307 NP_900491.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0438 NP_900492.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0859 NP_900494.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0438 NP_900495.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1132/TC:3.A.1.106.1 NP_900497.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis NP_900498.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0703 NP_900499.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1450/TC:1.B.22.2.1 NP_900500.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3168 NP_900501.1 identified by sequence similarity; ORF located using Blastx/COG3167 NP_900502.1 identified by sequence similarity; ORF located using Blastx NP_900503.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0849 NP_900504.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0744 NP_900505.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1409 NP_900506.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3555 NP_900507.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/TC:1.B.12.1.1 NP_900509.1 identified by sequence similarity; ORF located using Blastx/COG0583 NP_900511.1 identified by sequence similarity; ORF located using Blastx/COG2199 NP_900517.1 identified by sequence similarity; ORF located using Blastx/COG0142 NP_900518.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0261 NP_900519.1 involved in the peptidyltransferase reaction during translation NP_900520.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication NP_900522.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834/TC:3.A.1.3.1 NP_900523.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0765/TC:3.A.1.3.1 NP_900524.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0765/TC:3.A.1.3.1 NP_900525.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1126 NP_900526.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3042 NP_900528.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900534.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1011 NP_900535.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1073 NP_900536.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1846 NP_900537.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0605 NP_900540.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2077 NP_900541.1 identified by sequence similarity; ORF located using Blastx/COG0531/TC:2.A.3.6.1 NP_900543.1 identified by sequence similarity; ORF located using Blastx/COG0840 NP_900544.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1714 NP_900545.1 identified by sequence similarity; ORF located using Blastx/COG0663 NP_900546.1 identified by sequence similarity; ORF located using Blastx/COG0339 NP_900547.1 identified by sequence similarity; ORF located using Blastx/COG0708 NP_900548.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_900550.1 identified by sequence similarity; ORF located using Blastx/COG0642 NP_900552.1 identified by sequence similarity; ORF located using Blastx/COG0784 NP_900553.1 identified by sequence similarity; ORF located using Blastx/COG3437/TC:3.A.1.115.1 NP_900555.1 identified by sequence similarity; ORF located using Blastx/COG0532/TC:2.C.1.2.1 NP_900556.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1018 NP_900559.1 identified by sequence similarity; ORF located using Blastx/COG0438 NP_900561.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0745 NP_900562.1 identified by sequence similarity; ORF located using Blastx/COG0642 NP_900563.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3232 NP_900565.1 identified by sequence similarity; ORF located using Blastx/COG1629/TC:1.B.14.4.2 NP_900566.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0642 NP_900567.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_900568.1 activates fatty acids by binding to coenzyme A NP_900569.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_900571.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0277 NP_900572.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2173 NP_900575.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0625 NP_900576.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0591/TC:2.A.21.7.1 NP_900578.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0456 NP_900579.1 identified by sequence similarity; ORF located using Blastx/COG3511 NP_900581.1 identified by sequence similarity; ORF located using Blastx NP_900582.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1853 NP_900583.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2990 NP_900584.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1807 NP_900586.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate NP_900587.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1593/TC:2.A.56.1.1 NP_900588.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3090/TC:2.A.56.1.1 NP_900589.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1638/TC:2.A.56.1.1 NP_900590.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0642 NP_900591.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900592.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2059/TC:2.A.51.1.1 NP_900594.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0042 NP_900595.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0687/TC:3.A.1.11.2 NP_900596.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine NP_900597.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III NP_900598.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0251 NP_900601.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0384 NP_900602.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900603.1 catalyzes branch migration in Holliday junction intermediates NP_900604.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0306/TC:2.A.20.1.1 NP_900605.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation NP_900606.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0581/TC:3.A.1.7.1 NP_900607.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0573/TC:3.A.1.7.1 NP_900608.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0226/TC:3.A.1.7.1 NP_900609.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate NP_900610.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1314/TC:3.A.5.1.1 NP_900611.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0838/TC:3.D.1.2.1 NP_900612.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen NP_900613.1 Catalyzes the transfer of electrons from NADH to quinone NP_900614.1 Catalyzes the transfer of electrons from NADH to quinone NP_900615.1 Catalyzes the transfer of electrons from NADH to quinone NP_900616.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1894 NP_900617.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_900618.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1005/TC:3.D.1.2.1 NP_900619.1 Catalyzes the transfer of electrons from NADH to quinone NP_900620.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0839/TC:3.D.1.2.1 NP_900621.1 Catalyzes the transfer of electrons from NADH to quinone NP_900622.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_900623.1 Catalyzes the transfer of electrons from NADH to quinone NP_900624.1 Catalyzes the transfer of electrons from NADH to quinone NP_900626.1 identified by sequence similarity; ORF located using Blastx NP_900627.1 identified by sequence similarity; ORF located using Blastx/COG3293 NP_900628.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3293 NP_900630.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900631.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA NP_900632.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA NP_900633.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase NP_900634.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2199 NP_900635.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine NP_900636.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0685 NP_900637.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2862 NP_900638.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1522 NP_900639.1 identified by sequence similarity; ORF located using Blastx/COG3185 NP_900640.1 identified by sequence similarity; ORF located using Blastx/COG3508 NP_900641.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0179 NP_900642.1 identified by sequence similarity; ORF located using Blastx/COG0625 NP_900643.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.31.2 NP_900647.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0561 NP_900648.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge NP_900649.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1264/TC:4.A.1.1.1 NP_900650.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1925/TC:8.A.7.1.1 NP_900651.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2259 NP_900652.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_900653.1 identified by sequence similarity; ORF located using GeneMark/Blastx/TC:3.D.3.1.1 NP_900654.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype NP_900655.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism NP_900656.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism NP_900657.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis NP_900658.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step NP_900659.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone NP_900661.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions NP_900662.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1252/TC:3.D.1.1.1 NP_900663.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.15.1 NP_900664.1 identified by sequence similarity; ORF located using Blastx NP_900665.2 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor NP_900666.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine NP_900667.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine NP_900668.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3240/TC:1.B.12.8.1 NP_900669.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1261 NP_900670.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2747 NP_900672.1 catalyzes the formation of adenosylcobinamide-phosphate from adenosylcobyric acid NP_900673.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0513 NP_900675.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0053/TC:2.A.4.1.1 NP_900677.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages NP_900678.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_900679.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins NP_900680.1 identified by sequence similarity; ORF located using Blastx/COG1871 NP_900681.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_900682.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0835 NP_900683.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_900684.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0643 NP_900686.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0784 NP_900688.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. NP_900689.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1629/TC:1.B.14.1.6 NP_900690.1 identified by sequence similarity; ORF located using Blastx/COG0847 NP_900691.1 homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC NP_900692.1 identified by sequence similarity; ORF located using Blastx/COG1191 NP_900693.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0455 NP_900694.1 positive regulator of class III flagellar genes NP_900695.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1298/TC:3.A.6.1.2 NP_900696.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1377/TC:3.A.6.1.2 NP_900697.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived NP_900698.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0262 NP_900699.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1802 NP_900701.1 Involved in ubiquinone biosynthesis NP_900702.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline NP_900703.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2202 NP_900704.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2202 NP_900706.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1221 NP_900707.1 identified by sequence similarity; ORF located using Blastx/COG1690 NP_900708.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3541 NP_900709.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3245 NP_900710.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0277 NP_900711.1 identified by sequence similarity; ORF located using Blastx NP_900715.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1132 NP_900716.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1028 NP_900717.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900718.1 identified by sequence similarity; ORF located using Blastx/COG0454 NP_900724.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900727.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1396 NP_900729.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900730.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 NP_900731.1 identified by sequence similarity; ORF located using Blastx/COG1186 NP_900732.1 catalyzes the oxidation of malate to oxaloacetate NP_900733.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2188 NP_900735.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2009 NP_900736.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2142 NP_900737.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1053 NP_900738.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase NP_900739.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2938 NP_900740.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH NP_900741.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide NP_900742.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA NP_900744.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide NP_900745.1 catalyzes the interconversion of succinyl-CoA and succinate NP_900746.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle NP_900747.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1309 NP_900748.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.3.15 NP_900749.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_900750.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_900751.1 identified by sequence similarity; ORF located using Blastx/COG0840 NP_900753.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900755.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor NP_900756.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0625 NP_900757.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2975 NP_900758.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0633 NP_900759.1 involved in the maturation of iron-sulfur cluster-containing proteins NP_900761.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins NP_900762.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0316 NP_900763.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0822 NP_900764.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1104 NP_900765.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1959 NP_900766.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-ACP synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs NP_900767.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0747/TC:3.A.1.5.5 NP_900768.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0601/TC:3.A.1.5.5 NP_900769.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.5 NP_900770.1 identified by sequence similarity; ORF located using Blastx/COG0444 NP_900771.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides NP_900772.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2764 NP_900773.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA NP_900774.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1092 NP_900775.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0786/TC:2.A.27.1.1 NP_900776.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0526 NP_900777.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0386 NP_900779.1 identified by sequence similarity; ORF located using Blastx/COG1226 NP_900781.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome NP_900782.1 hydrolyzes diadenosine polyphosphate NP_900783.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling NP_900785.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1028 NP_900786.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_900787.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2059/TC:2.A.51.1.1 NP_900788.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2059/TC:2.A.51.1.3 NP_900789.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900790.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle NP_900791.1 catalyzes the conversion of citrate to isocitrate NP_900792.1 identified by sequence similarity; ORF located using Blastx/COG0407 NP_900794.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity NP_900795.1 identified by sequence similarity; ORF located using Blastx/COG2027 NP_900796.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0695 NP_900797.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA NP_900799.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate NP_900800.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer NP_900801.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0697 NP_900802.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0654 NP_900803.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_900805.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0697/TC:2.A.7.3.4 NP_900806.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0288/TC:2.C.1.2.1 NP_900807.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1454 NP_900808.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1113/TC:2.A.3.1.6 NP_900809.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_900810.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0667/TC:8.A.5.1.3 NP_900813.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2199 NP_900814.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2318 NP_900815.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0740 NP_900816.1 identified by sequence similarity; ORF located using Blastx/COG1197 NP_900818.1 identified by sequence similarity; ORF located using Blastx/COG2202 NP_900819.1 identified by sequence similarity; ORF located using Blastx NP_900820.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_900821.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1380/TC:1.E.14.1.1 NP_900822.1 identified by sequence similarity; ORF located using Blastx/COG1346 NP_900823.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0789 NP_900824.1 identified by sequence similarity; ORF located using Blastx/COG2217 NP_900826.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1607 NP_900827.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0564 NP_900828.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3394 NP_900829.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900830.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0463/TC:9.B.32.1.3 NP_900831.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1807 NP_900832.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3104/TC:2.A.17.1.1 NP_900833.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan NP_900834.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0625 NP_900835.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2606 NP_900837.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0747 NP_900838.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.21.1 NP_900839.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3198 NP_900840.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0348 NP_900841.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2010 NP_900843.1 CcoO; FixO NP_900844.1 CcoN; FixN NP_900845.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0265 NP_900846.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0308 NP_900847.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0071 NP_900848.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0747 NP_900849.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.2.21 NP_900850.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0596 NP_900852.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0251 NP_900853.1 identified by sequence similarity; ORF located using Blastx NP_900854.1 catalyzes the formation of acetaldehyde from ethanolamine NP_900855.1 identified by sequence similarity; ORF located using Blastx NP_900856.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0531/TC:2.A.3.5.1 NP_900857.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis NP_900858.1 identified by sequence similarity; ORF located using Blastx/COG3434 NP_900859.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3437 NP_900860.1 identified by sequence similarity; ORF located using Blastx/COG0784 NP_900861.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2370 NP_900864.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1174/TC:3.A.1.12.4 NP_900865.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1732/TC:3.A.1.12.4 NP_900866.1 identified by sequence similarity; ORF located using Blastx/COG1174/TC:3.A.1.12.4 NP_900867.2 identified by sequence similarity; ORF located using Blastx/COG1125 NP_900868.1 identified by sequence similarity; ORF located using Blastx/COG1301/TC:2.A.23.1.2 NP_900871.1 identified by sequence similarity; ORF located using Blastx/COG2732 NP_900873.1 identified by sequence similarity; ORF located using Blastx/COG0796 NP_900874.1 identified by sequence similarity; ORF located using Blastx/COG0489 NP_900875.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.2.19 NP_900876.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content NP_900878.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900880.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3596 NP_900882.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2849 NP_900883.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1476 NP_900886.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900889.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.14.3 NP_900892.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1012 NP_900894.1 identified by sequence similarity; ORF located using Blastx/COG1203 NP_900897.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3649 NP_900898.1 identified by sequence similarity; ORF located using Blastx/COG1468 NP_900899.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1518 NP_900900.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1343 NP_900903.1 identified by sequence similarity; ORF located using Blastx/COG3501 NP_900904.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1502 NP_900905.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0790 NP_900908.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3209 NP_900909.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3209 NP_900913.1 identified by sequence similarity; ORF located using Blastx/COG2916 NP_900914.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_900916.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_900918.1 identified by sequence similarity; ORF located using Blastx/COG2801 NP_900919.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0456 NP_900920.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3022 NP_900921.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine NP_900922.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1289/TC:9.B.4.1.1 NP_900923.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0741 NP_900924.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0491 NP_900925.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0500 NP_900926.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0328 NP_900927.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0847 NP_900928.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1211 NP_900929.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate NP_900930.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway NP_900931.1 identified by sequence similarity; ORF located using Blastx/COG0704 NP_900932.1 identified by sequence similarity; ORF located using Blastx NP_900933.1 identified by sequence similarity; ORF located using Blastx/TC:1.A.35.3.1 NP_900934.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1335 NP_900935.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2217/TC:3.A.3.5.1 NP_900936.1 identified by sequence similarity; ORF located using Blastx/COG2608 NP_900937.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1993 NP_900939.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2866 NP_900940.1 identified by sequence similarity; ORF located using Blastx/COG1506 NP_900941.1 identified by sequence similarity; ORF located using Blastx/COG2059 NP_900942.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2723 NP_900943.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0765/TC:3.A.1.3.2 NP_900944.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0765/TC:3.A.1.3.12 NP_900945.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0834/TC:3.A.1.3.10 NP_900946.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein NP_900947.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis NP_900948.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2076/TC:2.A.7.1.6 NP_900949.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2076/TC:2.A.7.1.1 NP_900950.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1131 NP_900952.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_900953.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1741 NP_900954.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1335 NP_900955.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1574 NP_900956.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate NP_900957.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1327 NP_900958.1 identified by sequence similarity; ORF located using Blastx/COG1670 NP_900959.1 identified by sequence similarity; ORF located using Blastx/COG1670 NP_900960.1 identified by sequence similarity; ORF located using Blastx/COG1985 NP_900962.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2317 NP_900963.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0596 NP_900964.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3539 NP_900965.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3121 NP_900966.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3188/TC:1.B.11.3.1 NP_900967.1 identified by sequence similarity; ORF located using Blastx NP_900969.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.6.4 NP_900970.1 identified by sequence similarity; ORF located using Blastx/COG2303 NP_900971.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_900972.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2207 NP_900973.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate NP_900975.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision NP_900976.1 identified by sequence similarity; ORF located using Blastx/COG0558 NP_900978.1 identified by sequence similarity; ORF located using Blastx NP_900979.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3023 NP_900980.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1680 NP_900983.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0693 NP_900984.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0693 NP_900987.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3109 NP_900988.1 molecular chaperone NP_900989.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2764 NP_900990.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1335 NP_900992.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1354 NP_900993.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0388 NP_900994.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1764 NP_900995.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0526 NP_900997.1 identified by sequence similarity; ORF located using Blastx/COG1968 NP_900998.1 identified by sequence similarity; ORF located using Blastx/COG0840 NP_900999.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates NP_901000.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1024 NP_901001.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0596 NP_901002.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0517 NP_901003.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1130/TC:3.A.1.11.2 NP_901004.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0665 NP_901011.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1237 NP_901012.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex NP_901013.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0586 NP_901014.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF NP_901015.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane NP_901016.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1862/TC:3.A.5.1.1 NP_901017.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) NP_901018.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) NP_901019.1 identified by sequence similarity; ORF located using Blastx/COG0290 NP_901020.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0291 NP_901021.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit NP_901022.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily NP_901023.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily NP_901024.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control NP_901025.1 identified by sequence similarity; ORF located using Blastx/COG0789 NP_901027.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0500 NP_901028.1 identified by sequence similarity; ORF located using Blastx/COG0840 NP_901029.1 identified by sequence similarity; ORF located using Blastx/COG2119/TC:9.B.26.1.1 NP_901030.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock NP_901031.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0697/TC:2.A.7.3.3 NP_901032.1 identified by sequence similarity; ORF located using Blastx/COG0354 NP_901033.1 identified by sequence similarity; ORF located using Blastx/COG2916 NP_901035.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2866 NP_901036.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_901037.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901038.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0500 NP_901040.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1638/TC:2.A.56.1.1 NP_901043.1 identified by sequence similarity; ORF located using Blastx/COG0621 NP_901044.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0517 NP_901045.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_901046.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2256 NP_901048.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA NP_901049.1 identified by sequence similarity; ORF located using Blastx NP_901050.1 identified by sequence similarity; ORF located using Blastx/COG0642 NP_901051.1 identified by sequence similarity; ORF located using Blastx/COG0745 NP_901052.1 identified by sequence similarity; ORF located using Blastx NP_901055.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0477 NP_901056.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1647 NP_901057.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1172 NP_901060.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901061.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_901063.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1280/TC:2.A.76.1.1 NP_901064.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0637 NP_901065.1 identified by sequence similarity; ORF located using Blastx/COG2017 NP_901066.1 identified by sequence similarity; ORF located using Blastx/COG1840 NP_901067.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0637 NP_901068.1 identified by sequence similarity; ORF located using Blastx/COG0477 NP_901069.1 identified by sequence similarity; ORF located using Blastx/COG0494 NP_901070.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0005 NP_901071.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3239 NP_901072.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0546 NP_901073.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0654 NP_901074.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0399 NP_901075.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0494 NP_901076.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0399 NP_901077.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0673 NP_901078.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1760 NP_901079.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0814/TC:2.A.42.2.1 NP_901081.1 identified by sequence similarity; ORF located using Blastx/TC:2.A.44.3.1 NP_901082.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1882 NP_901083.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1180 NP_901084.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3142 NP_901085.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0405 NP_901086.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_901087.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0840 NP_901088.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3279/TC:3.A.1.115.1 NP_901089.1 identified by sequence similarity; ORF located using Blastx NP_901091.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0488 NP_901092.1 identified by sequence similarity; ORF located using Blastx NP_901093.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0350 NP_901094.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0524 NP_901095.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1690 NP_901096.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901097.1 identified by sequence similarity; ORF located using Blastx NP_901099.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3209 NP_901101.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3209 NP_901102.1 identified by sequence similarity; ORF located using Blastx/COG3501 NP_901103.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901104.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901105.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_901106.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate NP_901107.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1012 NP_901108.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_901111.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2220 NP_901116.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0209 NP_901117.1 identified by sequence similarity; ORF located using Blastx NP_901118.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0174 NP_901121.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1167 NP_901122.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0348 NP_901123.1 identified by sequence similarity; ORF located using Blastx/TC:2.A.76.1.2 NP_901124.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2202 NP_901125.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2095/TC:9.B.10.1.1 NP_901126.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. NP_901127.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1393 NP_901128.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2805 NP_901129.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0318 NP_901130.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins NP_901131.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination NP_901132.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex NP_901133.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock NP_901134.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs NP_901135.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence NP_901136.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1185 NP_901138.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2831 NP_901139.1 identified by sequence similarity; ORF located using Blastx/TC:1.B.12.1.1 NP_901140.1 identified by sequence similarity; ORF located using Blastx NP_901141.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901144.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0840 NP_901147.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1196 NP_901148.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901149.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901151.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive NP_901152.1 catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin NP_901153.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1535 NP_901154.1 bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate NP_901155.1 synthesizes isochorismate acid from chorismate NP_901156.1 identified by sequence similarity; ORF located using Blastx/COG1020 NP_901157.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1120/TC:3.A.1.14.3 NP_901158.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0609/TC:3.A.1.14.5 NP_901159.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0614 NP_901160.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3553 NP_901161.1 identified by sequence similarity; ORF located using Blastx/COG4771 NP_901163.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3525 NP_901164.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0596 NP_901165.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_901166.2 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate NP_901167.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3138 NP_901168.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3138 NP_901169.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH NP_901170.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation NP_901173.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0559/TC:3.A.1.4.1 NP_901174.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0559/TC:3.A.1.4.1 NP_901175.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0411 NP_901176.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0410 NP_901177.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834 NP_901178.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1434 NP_901180.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.2.7 NP_901181.1 identified by sequence similarity; ORF located using Blastx/COG2207 NP_901183.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1785 NP_901184.1 identified by sequence similarity; ORF located using Blastx/COG1785 NP_901185.1 identified by sequence similarity; ORF located using Blastx/COG2206 NP_901186.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1643 NP_901187.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1167 NP_901188.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2513 NP_901189.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2128 NP_901191.1 identified by sequence similarity; ORF located using Blastx/COG0642 NP_901192.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0642 NP_901193.1 identified by sequence similarity; ORF located using Blastx/COG2197 NP_901194.1 identified by sequence similarity; ORF located using Blastx/COG0840 NP_901195.1 identified by sequence similarity; ORF located using Blastx/COG1349 NP_901196.1 identified by sequence similarity; ORF located using Blastx/COG0561 NP_901198.1 identified by sequence similarity; ORF located using Blastx/COG0754 NP_901199.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901200.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate NP_901201.1 identified by sequence similarity; ORF located using Blastx/COG0282 NP_901202.1 identified by sequence similarity; ORF located using Blastx/COG2146 NP_901204.1 identified by sequence similarity; ORF located using Blastx/COG0697 NP_901205.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0697/TC:2.A.7.3.6 NP_901207.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2183 NP_901208.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain NP_901209.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0683 NP_901211.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0304 NP_901215.1 identified by sequence similarity; ORF located using Blastx/COG1233 NP_901216.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1028 NP_901217.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1146 NP_901218.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901222.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901223.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1024 NP_901224.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0346 NP_901225.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0778 NP_901226.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid NP_901227.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide NP_901228.1 identified by sequence similarity; ORF located using Blastx/COG0609/TC:3.A.1.13.1 NP_901229.1 identified by sequence similarity; ORF located using Blastx/COG0614 NP_901230.1 identified by sequence similarity; ORF located using Blastx/COG1120/TC:3.A.1.14.3 NP_901231.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0523 NP_901232.1 identified by sequence similarity; ORF located using Blastx/COG1010 NP_901233.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3 NP_901234.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2875 NP_901235.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2243 NP_901236.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1903 NP_901237.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2082 NP_901238.1 catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a NP_901239.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1 NP_901240.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1239 NP_901241.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1429 NP_901242.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3411 NP_901243.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3376/TC:2.A.52.1.1 NP_901244.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase NP_901245.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group NP_901246.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation NP_901247.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1218 NP_901248.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_901249.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_901250.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2201 NP_901251.1 identified by sequence similarity; ORF located using Blastx/COG0784 NP_901252.1 identified by sequence similarity; ORF located using Blastx/COG2202 NP_901253.1 Catalyzes a key regulatory step in fatty acid biosynthesis NP_901254.1 identified by sequence similarity; ORF located using Blastx/COG0526 NP_901255.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes NP_901256.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0494 NP_901257.1 identified by sequence similarity; ORF located using Blastx/COG2199 NP_901258.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0157 NP_901259.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3235 NP_901260.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3686 NP_901261.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1011 NP_901262.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis NP_901263.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones NP_901265.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0745 NP_901266.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0642 NP_901267.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2156/TC:3.A.3.7.1 NP_901268.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2216/TC:3.A.3.7.1 NP_901269.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions NP_901271.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0730 NP_901272.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0834 NP_901273.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0454 NP_901274.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_901275.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901276.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2137 NP_901277.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs NP_901278.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons NP_901279.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2951 NP_901280.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA NP_901281.1 identified by sequence similarity; ORF located using Blastx/COG0718 NP_901282.1 involved in a recombinational process of DNA repair, independent of the recBC complex NP_901283.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0500 NP_901284.1 identified by sequence similarity; ORF located using Blastx/COG2834 NP_901286.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers NP_901287.1 identified by sequence similarity; ORF located using Blastx/COG3146 NP_901288.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901290.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2202/TC:3.A.1.115.1 NP_901291.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_901292.1 identified by sequence similarity; ORF located using Blastx/COG0243 NP_901294.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1526 NP_901295.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0746 NP_901296.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0841/TC:2.A.6.2.2 NP_901297.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0845/TC:8.A.1.6.1 NP_901298.1 identified by sequence similarity; ORF located using Blastx/COG1538 NP_901299.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2113 NP_901300.1 identified by sequence similarity; ORF located using Blastx/COG0604 NP_901301.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0583 NP_901302.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0617 NP_901303.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0801 NP_901304.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1428 NP_901305.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate NP_901306.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine NP_901307.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) NP_901308.1 identified by sequence similarity; ORF located using Blastx/COG0834 NP_901309.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_901310.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity NP_901311.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates NP_901312.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor NP_901313.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria NP_901314.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3239 NP_901315.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion NP_901316.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/TC:1.B.33.2.1 NP_901318.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate NP_901320.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine NP_901321.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism NP_901322.1 identified by sequence similarity; ORF located using Blastx/COG0840 NP_901323.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1232 NP_901324.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA NP_901326.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA NP_901327.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate NP_901328.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0204 NP_901329.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1451 NP_901330.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0346 NP_901331.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1055 NP_901332.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1966 NP_901334.1 unknown function; when overproduced it confers drug-resistance NP_901335.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3275 NP_901336.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0773 NP_901337.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2202 NP_901338.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_901340.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0733/TC:2.A.22.5.1 NP_901341.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834 NP_901343.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2080 NP_901344.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1529 NP_901345.1 identified by sequence similarity; ORF located using Blastx/COG1975 NP_901347.1 identified by sequence similarity; ORF located using Blastx/COG0840 NP_901348.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1130 NP_901349.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1177/TC:3.A.1.6.3 NP_901350.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1176/TC:3.A.1.20.1 NP_901351.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1840/TC:3.A.1.11.1 NP_901352.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0665 NP_901353.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0446 NP_901354.1 identified by sequence similarity; ORF located using Blastx/COG0446 NP_901357.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0252 NP_901360.1 identified by sequence similarity; ORF located using Blastx/COG3172 NP_901361.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2501 NP_901363.1 identified by sequence similarity; ORF located using Blastx/COG0613 NP_901364.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0009 NP_901365.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1994 NP_901366.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1994 NP_901367.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_901368.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2202 NP_901369.1 identified by sequence similarity; ORF located using Blastx NP_901370.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1261 NP_901371.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1815 NP_901372.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1558 NP_901373.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production NP_901374.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1749 NP_901375.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1749 NP_901376.1 makes up the distal portion of the flagellar basal body rod NP_901377.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod NP_901378.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum NP_901379.2 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook NP_901380.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; in Vibrio parahaemolyticus the protein in this cluster is associated with the lateral flagella NP_901381.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901382.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1502 NP_901383.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0367 NP_901384.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1522 NP_901385.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1280 NP_901386.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_901388.1 identified by sequence similarity; ORF located using Blastx/COG0642 NP_901389.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2041 NP_901390.1 identified by sequence similarity; ORF located using Blastx/COG2326 NP_901392.1 identified by sequence similarity; ORF located using Blastx/COG0659 NP_901394.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0111 NP_901396.1 identified by sequence similarity; ORF located using Blastx/TC:2.A.7.3.6 NP_901397.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0561 NP_901400.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2206 NP_901403.1 identified by sequence similarity; ORF located using Blastx NP_901404.1 identified by sequence similarity; ORF located using Blastx/COG1538/TC:1.B.17.2.1 NP_901405.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2274/TC:3.A.1.109.1 NP_901406.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0845/TC:8.A.1.3.1 NP_901407.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_901408.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1032 NP_901410.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1670 NP_901411.1 identified by sequence similarity; ORF located using Blastx/COG0500 NP_901412.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_901413.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides NP_901414.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901415.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis NP_901416.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0215 NP_901417.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome NP_901418.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1807 NP_901422.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901423.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901425.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1203 NP_901426.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1518 NP_901428.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase NP_901429.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0119/TC:3.B.1.1.1 NP_901431.1 identified by sequence similarity; ORF located using Blastx/COG0457 NP_901432.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0439/TC:3.B.1.1.2 NP_901433.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA NP_901434.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0825/TC:3.B.1.1.2 NP_901435.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901436.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1960 NP_901437.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0494 NP_901438.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1671 NP_901439.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.11.1 NP_901440.1 identified by sequence similarity; ORF located using Blastx/COG3279 NP_901441.2 identified by sequence similarity; ORF located using Blastx/COG0642 NP_901442.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2128 NP_901443.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_901444.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1018 NP_901445.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0625 NP_901446.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1846 NP_901447.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0697/TC:2.A.7.3.3 NP_901448.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_901449.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0789 NP_901450.1 activates fatty acids by binding to coenzyme A NP_901451.1 identified by sequence similarity; ORF located using Blastx/COG3318/TC:3.A.5.1.1 NP_901452.1 identified by sequence similarity; ORF located using Blastx/COG3509 NP_901455.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1960 NP_901456.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3216 NP_901457.1 identified by sequence similarity; ORF located using Blastx/COG0494 NP_901459.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2766 NP_901460.1 identified by sequence similarity; ORF located using Blastx/COG2718 NP_901461.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2719 NP_901463.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1120 NP_901464.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0609/TC:3.A.1.14.5 NP_901465.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis NP_901466.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2913 NP_901467.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0735 NP_901468.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys NP_901469.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate NP_901470.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.36.1 NP_901474.1 catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates NP_901475.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0825 NP_901476.1 identified by sequence similarity; ORF located using Blastx/COG1257 NP_901477.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0439 NP_901479.1 identified by sequence similarity; ORF located using Blastx/COG2079 NP_901480.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1846 NP_901481.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3133 NP_901482.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors NP_901483.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0778 NP_901484.1 Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility NP_901485.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0616 NP_901486.1 identified by sequence similarity; ORF located using Blastx/COG2146 NP_901487.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0546 NP_901488.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0564 NP_901490.1 identified by sequence similarity; ORF located using Blastx/COG1530/TC:2.C.1.2.1 NP_901492.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0671 NP_901493.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0477/TC:2.A.1.2.22 NP_901494.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3681 NP_901495.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2207 NP_901496.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0654 NP_901497.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_901498.1 identified by sequence similarity; ORF located using Blastx/COG1118 NP_901499.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0555/TC:3.A.1.6.1 NP_901500.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0555/TC:3.A.1.6.1 NP_901502.1 identified by sequence similarity; ORF located using Blastx/COG1613/TC:3.A.1.6.1 NP_901503.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2200 NP_901506.1 identified by sequence similarity; ORF located using Blastx/COG0454 NP_901507.1 identified by sequence similarity; ORF located using Blastx/COG1309 NP_901508.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901509.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1078 NP_901510.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3454 NP_901511.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1136 NP_901512.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1101/TC:3.A.1.5.1 NP_901513.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3627 NP_901514.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3626 NP_901515.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3625 NP_901516.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3624 NP_901517.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2188 NP_901518.1 identified by sequence similarity; ORF located using Blastx NP_901519.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0194 NP_901520.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_901521.1 identified by sequence similarity; ORF located using Blastx/COG0840 NP_901522.1 identified by sequence similarity; ORF located using Blastx/COG0784 NP_901524.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3221 NP_901525.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1840 NP_901526.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1130 NP_901527.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1178/TC:3.A.1.10.2 NP_901530.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0744 NP_901531.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0477/TC:2.A.1.14.1 NP_901532.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1070 NP_901535.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1073 NP_901539.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2197 NP_901540.1 identified by sequence similarity; ORF located using Blastx/COG0784 NP_901546.1 identified by sequence similarity; ORF located using Blastx NP_901548.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/TC:1.B.12.2.1 NP_901550.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide NP_901551.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0288 NP_901552.2 controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source NP_901553.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_901554.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1473 NP_901557.1 identified by sequence similarity; ORF located using Blastx/COG3209 NP_901559.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0629 NP_901561.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2885/TC:1.B.6.1.3 NP_901562.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.2.10 NP_901563.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate NP_901565.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0526 NP_901567.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901568.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0361 NP_901570.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1167 NP_901571.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1280/TC:2.A.76.1.1 NP_901572.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1335 NP_901574.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0697/TC:2.A.7.3.2 NP_901575.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0693 NP_901578.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1840/TC:3.A.1.10.2 NP_901579.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1178/TC:3.A.1.10.2 NP_901580.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1130 NP_901581.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2606 NP_901582.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0840 NP_901583.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1522 NP_901584.1 catalyzes the oxidative deamination of D-amino acids NP_901585.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0787 NP_901586.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2202 NP_901587.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2831/TC:1.B.20.1.1 NP_901588.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3210/TC:1.B.12.1.1 NP_901589.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0784 NP_901590.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1741 NP_901591.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_901592.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1802 NP_901593.1 identified by sequence similarity; ORF located using Blastx/COG2801 NP_901595.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0190 NP_901596.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0788 NP_901599.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell NP_901601.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1972/TC:2.A.41.1.1 NP_901602.1 transfers methyl group from SAM to 23S rRNA at position 1939 to form 5-methyl-uridine; binds iron-sulfur clusters NP_901603.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1376 NP_901604.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2873 NP_901605.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1167 NP_901606.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1280/TC:2.A.76.1.1 NP_901607.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation NP_901610.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling NP_901611.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0824 NP_901612.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules NP_901614.1 identified by sequence similarity; ORF located using Blastx/COG0542 NP_901615.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2818 NP_901616.1 binds to flagellin and appears to stabilize flagellin during flagella assembly NP_901617.1 identified by sequence similarity; ORF located using Blastx/COG0784 NP_901618.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0745 NP_901621.1 identified by sequence similarity; ORF located using Blastx/COG0784 NP_901622.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2833 NP_901625.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0826 NP_901627.1 identified by sequence similarity; ORF located using Blastx/COG0687/TC:3.A.1.11.2 NP_901628.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1176/TC:3.A.1.11.2 NP_901629.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1177/TC:3.A.1.11.2 NP_901632.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase NP_901633.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_901634.1 identified by sequence similarity; ORF located using Blastx/COG0748 NP_901635.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901638.1 identified by sequence similarity; ORF located using Blastx/COG1404 NP_901640.1 identified by sequence similarity; ORF located using Blastx/COG1629/TC:1.B.14.1.6 NP_901641.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0810/TC:2.C.1.1.1 NP_901642.1 identified by sequence similarity NP_901643.1 identified by sequence similarity; /COG0848/TC:2.C.1.1.1 NP_901644.1 identified by sequence similarity; ORF located using Blastx/COG0848 NP_901645.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0845/TC:8.A.1.2.1 NP_901646.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0841/TC:2.A.6.2.12 NP_901648.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0747/TC:3.A.1.5.1 NP_901649.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0601/TC:3.A.1.5.3 NP_901650.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.2 NP_901651.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1123/TC:3.A.1.5.2 NP_901652.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1629/TC:1.B.14.3.1 NP_901653.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0810/TC:2.C.1.1.1 NP_901654.1 identified by sequence similarity NP_901655.1 identified by sequence similarity; ORF located using Blastx/COG0848 NP_901656.1 identified by sequence similarity; ORF located using Blastx/COG0848 NP_901657.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3590 NP_901658.1 identified by sequence similarity; ORF located using Blastx/COG2356 NP_901659.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3203/TC:1.B.33.2.1 NP_901660.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0542 NP_901661.1 helicase involved in DNA repair and perhaps also replication NP_901662.1 identified by sequence similarity; ORF located using Blastx/COG1982 NP_901663.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation NP_901664.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming NP_901665.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0697/TC:2.A.7.3.2 NP_901666.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901669.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0638 NP_901670.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers NP_901671.1 identified by sequence similarity; ORF located using Blastx NP_901673.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_901674.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1956 NP_901675.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0807 NP_901677.1 identified by sequence similarity; ORF located using Blastx/COG2132 NP_901678.1 identified by sequence similarity; ORF located using Blastx/COG1262 NP_901680.1 identified by sequence similarity; ORF located using Blastx NP_901682.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2860 NP_901683.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901685.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_901686.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1182 NP_901687.1 identified by sequence similarity; ORF located using Blastx/COG0834 NP_901688.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0834 NP_901689.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1012 NP_901690.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0346 NP_901691.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1396 NP_901692.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0686/TC:3.D.2.3.1 NP_901693.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2071 NP_901694.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0174 NP_901695.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0161 NP_901696.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine NP_901697.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine NP_901698.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0500 NP_901700.1 identified by sequence similarity; ORF located using Blastx NP_901701.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2828 NP_901702.1 identified by sequence similarity; ORF located using Blastx/COG0617 NP_901703.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0702 NP_901704.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0741 NP_901705.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0346 NP_901706.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0695 NP_901707.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide NP_901708.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901709.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0477/TC:2.A.1.2.19 NP_901710.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1972 NP_901711.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3197 NP_901712.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2217/TC:3.A.3.5.1 NP_901713.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0604 NP_901714.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis NP_901715.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0347 NP_901716.1 identified by sequence similarity; ORF located using Blastx/TC:2.A.76.1.1 NP_901717.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription NP_901718.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0329 NP_901720.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0697 NP_901721.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1063 NP_901722.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1917 NP_901723.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2828 NP_901724.1 Catalyzes the conversion of citrate to isocitrate NP_901725.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3554 NP_901726.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity NP_901727.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate NP_901728.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response NP_901729.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3073 NP_901730.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3026 NP_901731.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0265 NP_901732.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0526 NP_901733.1 binds to the ribosome on the universally-conserved alpha-sarcin loop NP_901734.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0681 NP_901735.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2165 NP_901736.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity NP_901737.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome NP_901739.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA NP_901740.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) NP_901741.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1988 NP_901742.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0736 NP_901743.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides NP_901745.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1058 NP_901746.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0454 NP_901749.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1162 NP_901750.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0823 NP_901751.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2084 NP_901752.1 identified by sequence similarity; ORF located using Blastx/COG1024 NP_901753.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA NP_901754.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1960 NP_901755.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1012 NP_901756.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1250 NP_901757.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0789 NP_901758.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0183 NP_901759.1 identified by sequence similarity; ORF located using Blastx/COG0513 NP_901761.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1309 NP_901762.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0859 NP_901763.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_901764.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids NP_901765.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme NP_901766.1 identified by sequence similarity; ORF located using Blastx/COG3164 NP_901767.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0388 NP_901768.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0312 NP_901771.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0693 NP_901772.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1473 NP_901773.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901774.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0529 NP_901775.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_901776.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1510 NP_901778.1 identified by sequence similarity; ORF located using Blastx/COG0702 NP_901781.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0338 NP_901784.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901785.1 identified by sequence similarity; ORF located using Blastx NP_901787.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901788.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3500 NP_901789.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1652 NP_901790.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_901791.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0730 NP_901793.1 identified by sequence similarity; ORF located using Blastx NP_901794.1 identified by sequence similarity; ORF located using Blastx NP_901797.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3498 NP_901799.1 identified by sequence similarity; ORF located using Blastx NP_901800.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901801.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901804.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901805.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901806.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901808.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2369 NP_901809.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901811.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901814.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1734 NP_901820.1 identified by sequence similarity; ORF located using Blastx/COG1396 NP_901825.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1196 NP_901826.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901827.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0542/TC:9.B.42.1.1 NP_901828.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901831.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901833.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0776 NP_901835.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901836.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_901837.1 identified by sequence similarity; ORF located using Blastx/COG3493/TC:2.A.24.2.3 NP_901838.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0066 NP_901839.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate NP_901840.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_901841.1 involved in methylation of ribosomal protein L3 NP_901842.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1109 NP_901843.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate NP_901845.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity NP_901846.1 identified by sequence similarity; ORF located using Blastx/COG1733 NP_901847.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1028 NP_901848.1 identified by sequence similarity; ORF located using Blastx/COG0477/TC:2.A.1.15.2 NP_901849.1 catalyzes the formation of anthranilate and glutamate from chorismate and glutamine NP_901850.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate NP_901851.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1028 NP_901852.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0036 NP_901853.1 protein associated with Co2+ and Mg2+ efflux NP_901854.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1132 NP_901855.1 identified by sequence similarity; ORF located using Blastx/COG3209 NP_901858.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0639 NP_901859.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1418 NP_901861.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1496 NP_901862.1 identified by sequence similarity; ORF located using Blastx/COG0564 NP_901863.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0457 NP_901864.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2070 NP_901865.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901866.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit NP_901867.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu NP_901868.1 Catalyzes the phosphorylation of UMP to UDP NP_901869.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs NP_901870.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0020 NP_901871.1 identified by sequence similarity; ORF located using Blastx/COG0575 NP_901872.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate NP_901873.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0750 NP_901874.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0729 NP_901875.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2825 NP_901876.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis NP_901877.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP NP_901878.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis NP_901879.1 identified by sequence similarity; ORF located using Blastx/COG0763 NP_901880.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids NP_901881.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3663 NP_901883.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_901884.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2041 NP_901885.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0784 NP_901886.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901887.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2509 NP_901888.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0596 NP_901889.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901890.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_901891.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2203 NP_901892.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_901893.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1115/TC:2.A.25.1.1 NP_901894.1 identified by sequence similarity; ORF located using Blastx/COG2801 NP_901895.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1115/TC:2.A.25.1.2 NP_901896.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0784 NP_901897.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0715 NP_901898.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2223/TC:2.A.1.8.2 NP_901899.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0243/TC:5.A.3.2.1 NP_901900.1 identified by sequence similarity; ORF located using Blastx/COG1629/TC:1.B.14.7.1 NP_901901.1 identified by sequence similarity; ORF located using Blastx/COG2382 NP_901902.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3251 NP_901903.1 identified by sequence similarity; ORF located using Blastx/COG0365/TC:9.B.17.1.4 NP_901904.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1120 NP_901905.1 with FepBCD is involved in the transport of ferric enterobactin NP_901906.1 with FepBCG is involved in the transport of ferric enterobactin NP_901907.1 protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters NP_901909.1 with FepCDG is involved in the transport of ferric enterobactin NP_901910.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0845/TC:8.A.1.6.1 NP_901911.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0841/TC:2.A.6.2.2 NP_901912.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1538/TC:1.B.17.3.5 NP_901913.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0346 NP_901914.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive NP_901915.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1902 NP_901917.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0176 NP_901918.1 identified by sequence similarity; ORF located using Blastx/COG0738/TC:2.A.1.7.1 NP_901920.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3182 NP_901921.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1629/TC:1.B.14.1.4 NP_901923.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance NP_901925.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0110 NP_901926.1 identified by sequence similarity; ORF located using Blastx/COG0161 NP_901928.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1028 NP_901930.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0561 NP_901931.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0500 NP_901932.1 identified by sequence similarity; ORF located using Blastx/COG0477 NP_901933.1 identified by sequence similarity; ORF located using Blastx/COG3209 NP_901936.1 identified by sequence similarity; ORF located using Blastx NP_901944.1 identified by sequence similarity; ORF located using Blastx NP_901954.1 Catalyzes the rate-limiting step in dNTP synthesis NP_901957.1 Catalyzes the rate-limiting step in dNTP synthesis NP_901959.1 identified by sequence similarity; ORF located using Blastx/COG0715/TC:3.A.1.17.2 NP_901960.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1116 NP_901961.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0600/TC:3.A.1.17.1 NP_901963.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3568 NP_901965.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1135 NP_901966.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2011 NP_901967.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1464 NP_901968.1 negatively supercoils closed circular double-stranded DNA NP_901969.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2050 NP_901970.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2050 NP_901971.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine NP_901973.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1506 NP_901974.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1619 NP_901975.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1345 NP_901976.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP NP_901977.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2895 NP_901978.1 identified by sequence similarity; ORF located using Blastx/COG2199 NP_901979.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1299/TC:4.A.2.1.1 NP_901980.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1445/TC:4.A.2.1.1 NP_901981.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1925/TC:8.A.7.1.1 NP_901982.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1482 NP_901983.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2207 NP_901986.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3328 NP_901987.1 identified by sequence similarity; ORF located using Blastx/COG1670 NP_901991.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0497 NP_901992.1 catalyzes the phosphorylation of NAD to NADP NP_901993.1 identified by sequence similarity; ORF located using Blastx/COG2197 NP_901994.1 identified by sequence similarity; ORF located using Blastx/COG0642 NP_901995.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0225 NP_901996.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0123 NP_901997.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_901998.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0454 NP_901999.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0042 NP_902000.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0668/TC:1.A.23.4.2 NP_902002.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1974 NP_902003.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902004.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0024 NP_902005.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2378 NP_902006.1 identified by sequence similarity; ORF located using Blastx/COG0693 NP_902007.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0454 NP_902008.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1670 NP_902012.1 catalyzes the formation of thymidine 5'-phosphate from thymidine NP_902014.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0778 NP_902015.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2961 NP_902016.1 identified by sequence similarity; ORF located using Blastx/COG0564 NP_902017.1 identified by sequence similarity; ORF located using Blastx/COG1744 NP_902018.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1129 NP_902019.1 identified by sequence similarity; ORF located using Blastx/COG1079 NP_902020.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1079/TC:3.A.1.2.2 NP_902021.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0303 NP_902022.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0628/TC:9.B.22.1.1 NP_902023.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm NP_902024.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0596 NP_902025.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1605 NP_902026.1 identified by sequence similarity; ORF located using Blastx/COG1611 NP_902028.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2876 NP_902029.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1573 NP_902030.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2070 NP_902031.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0302 NP_902032.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0545 NP_902033.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1956 NP_902034.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1028 NP_902035.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity NP_902036.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction NP_902037.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0501 NP_902038.1 3'-5' exoribonuclease specific for small oligoribonuclotides NP_902039.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0166 NP_902040.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1546 NP_902041.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3000 NP_902042.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0582 NP_902043.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0714 NP_902046.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0589 NP_902047.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3620 NP_902049.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine NP_902050.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0733/TC:2.A.22.5.1 NP_902051.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902052.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate NP_902054.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1309 NP_902055.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0668 NP_902056.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein NP_902057.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine NP_902058.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2102 NP_902059.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis NP_902060.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not NP_902061.1 Regulates rRNA biosynthesis by transcriptional antitermination NP_902062.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP NP_902063.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1267 NP_902064.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1674/TC:3.A.12.1.2 NP_902065.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0443 NP_902066.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0582 NP_902067.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn NP_902068.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0784 NP_902069.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0745 NP_902070.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_902071.1 identified by sequence similarity; ORF located using Blastx/COG2197 NP_902073.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902074.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0419 NP_902076.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1187 NP_902080.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1217 NP_902082.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates NP_902083.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0602 NP_902086.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.12.2 NP_902090.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1766/TC:3.A.6.1.1 NP_902092.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902093.1 identified by sequence similarity; ORF located using Blastx NP_902094.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0625 NP_902095.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1859 NP_902096.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2135 NP_902097.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate NP_902098.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834 NP_902099.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0038/TC:1.A.11.4.1 NP_902100.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3642 NP_902106.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902108.1 identified by sequence similarity; ORF located using Blastx/COG0640 NP_902109.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0394 NP_902110.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0798/TC:2.A.59.1.1 NP_902112.1 identified by sequence similarity; ORF located using Blastx/COG0530 NP_902114.1 identified by sequence similarity; ORF located using Blastx/COG2207 NP_902116.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0332 NP_902117.1 identified by sequence similarity; ORF located using Blastx/COG0451 NP_902118.1 identified by sequence similarity; ORF located using Blastx/COG0491 NP_902119.1 identified by sequence similarity; ORF located using Blastx/COG1541 NP_902122.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3239 NP_902124.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0006 NP_902125.1 identified by sequence similarity; ORF located using Blastx/COG0534 NP_902126.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1309 NP_902127.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0842/TC:3.A.1.102.1 NP_902128.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0842 NP_902129.1 identified by sequence similarity; ORF located using Blastx/COG1131 NP_902130.1 identified by sequence similarity; ORF located using Blastx/COG0845/TC:8.A.1.1.1 NP_902131.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1988 NP_902133.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_902135.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1695 NP_902136.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2375 NP_902137.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1744 NP_902140.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate NP_902141.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_902142.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli NP_902143.1 identified by sequence similarity; ORF located using Blastx/COG1322 NP_902144.1 identified by sequence similarity; ORF located using Blastx NP_902145.1 identified by sequence similarity; ORF located using Blastx/COG0608 NP_902146.1 identified by sequence similarity; ORF located using Blastx NP_902147.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0739 NP_902148.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling NP_902149.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1674/TC:3.A.12.1.2 NP_902150.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic NP_902151.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0683 NP_902153.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1309 NP_902154.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2311 NP_902155.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA NP_902156.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_902157.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1309 NP_902158.1 identified by sequence similarity; ORF located using Blastx NP_902159.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2303 NP_902160.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0542 NP_902161.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1012 NP_902162.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2207 NP_902163.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1764 NP_902164.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_902165.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1344 NP_902166.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0782 NP_902167.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3437 NP_902168.1 identified by sequence similarity; ORF located using Blastx/COG0784 NP_902169.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1896 NP_902170.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2945 NP_902171.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3411 NP_902172.1 unwinds double stranded DNA NP_902173.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2081 NP_902174.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0605 NP_902175.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_902176.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins NP_902177.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1352 NP_902178.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0835 NP_902179.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_902180.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0643 NP_902182.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_902183.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0840 NP_902184.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834 NP_902185.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway NP_902186.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1286 NP_902187.1 identified by sequence similarity; ORF located using GeneMark/Blastx/TC:2.C.1.1.1 NP_902188.1 identified by sequence similarity; ORF located using Blastx/COG0285 NP_902190.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0488 NP_902192.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1879/TC:3.A.1.2.1 NP_902193.1 identified by sequence similarity; ORF located using Blastx/COG0791 NP_902194.1 identified by sequence similarity; ORF located using Blastx NP_902195.1 identified by sequence similarity; ORF located using Blastx/COG3391 NP_902196.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1595 NP_902197.1 identified by sequence similarity; ORF located using Blastx NP_902198.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0253 NP_902199.1 identified by sequence similarity; ORF located using Blastx/COG3159 NP_902201.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0697/TC:2.A.7.3.2 NP_902202.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2896 NP_902203.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1763 NP_902204.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0642 NP_902205.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2197 NP_902210.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2181/TC:5.A.3.1.1 NP_902211.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2180 NP_902212.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1140 NP_902213.1 identified by sequence similarity; ORF located using Blastx/COG0243 NP_902214.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2223 NP_902215.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2223 NP_902216.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902217.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3008 NP_902218.1 identified by sequence similarity; ORF located using Blastx/COG2995 NP_902219.1 identified by sequence similarity; ORF located using Blastx/COG2995 NP_902220.1 identified by sequence similarity; ORF located using Blastx/COG0177 NP_902221.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0730 NP_902222.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_902223.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0760 NP_902224.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0776 NP_902225.1 identified by sequence similarity; ORF located using Blastx/COG0466 NP_902226.1 identified by sequence similarity; ORF located using Blastx/COG2801 NP_902227.1 binds and unfolds substrates as part of the ClpXP protease NP_902228.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0740 NP_902229.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer NP_902230.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2373 NP_902232.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0744 NP_902235.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1028 NP_902236.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_902237.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1279/TC:2.A.75.1.1 NP_902238.1 identified by sequence similarity; ORF located using Blastx/COG2203 NP_902239.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport NP_902240.1 identified by sequence similarity; ORF located using Blastx/COG0295 NP_902241.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0739 NP_902242.1 identified by sequence similarity; ORF located using Blastx/COG1457/TC:2.A.39.2.1 NP_902243.1 identified by sequence similarity; ORF located using Blastx/COG2202 NP_902244.1 identified by sequence similarity; ORF located using Blastx NP_902245.1 identified by sequence similarity; ORF located using Blastx NP_902247.1 identified by sequence similarity; ORF located using Blastx/TC:1.C.36.2.2 NP_902248.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0457 NP_902249.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902250.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_902252.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902253.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_902254.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2207 NP_902255.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902256.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902258.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1766/TC:3.A.6.1.1 NP_902261.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3038 NP_902262.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3397 NP_902264.1 identified by sequence similarity; ORF located using Blastx/COG1317 NP_902266.1 identified by sequence similarity; ORF located using GeneMark/Blastx/TC:3.A.6.1.1 NP_902267.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1450/TC:1.B.22.3.3 NP_902269.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2197 NP_902270.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0784 NP_902272.1 with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system NP_902273.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1157/TC:3.A.6.1.1 NP_902276.1 identified by sequence similarity; ORF located using Blastx/COG1886 NP_902277.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response NP_902278.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1987/TC:3.A.6.1.1 NP_902279.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1684/TC:3.A.6.1.1 NP_902280.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli NP_902281.1 identified by sequence similarity; ORF located using Blastx/COG0741 NP_902282.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0389 NP_902285.1 carries the fatty acid chain in fatty acid biosynthesis NP_902286.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902288.1 identified by sequence similarity; ORF located using Blastx/COG0840 NP_902289.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840/TC:1.C.36.3.2 NP_902290.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0457 NP_902291.1 Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins NP_902292.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1684/TC:3.A.6.1.1 NP_902293.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1987/TC:3.A.6.1.1 NP_902294.1 part of a type III secretory system probably involved in invasion into eukaryotic cells NP_902295.1 involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells NP_902296.1 identified by sequence similarity; ORF located using Blastx NP_902297.1 identified by sequence similarity; ORF located using Blastx/COG1196 NP_902298.1 Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase NP_902299.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902300.1 identified by sequence similarity; ORF located using Blastx/COG1298/TC:3.A.6.1.1 NP_902301.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902302.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1450/TC:1.B.22.3.2 NP_902303.1 identified by sequence similarity; ORF located using Blastx/COG2207 NP_902304.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0642 NP_902305.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0745 NP_902306.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0526/TC:5.A.1.1.1 NP_902307.1 Involved in disulfide bond formation NP_902308.1 identified by sequence similarity; ORF located using Blastx NP_902310.1 Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system NP_902311.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0741 NP_902312.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0670/TC:9.B.24.2.1 NP_902313.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_902314.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_902315.1 identified by sequence similarity; ORF located using Blastx/COG1366 NP_902316.1 identified by sequence similarity; ORF located using Blastx/COG0840 NP_902318.1 catalyzes the formation of pyruvate from serine NP_902319.1 regulates the synthesis and expression of the dsdXA operon and dadA gene NP_902320.1 identified by sequence similarity; ORF located using Blastx/COG2977 NP_902323.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0073 NP_902324.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2207 NP_902326.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2124 NP_902329.1 identified by sequence similarity; ORF located using Blastx/COG3396 NP_902330.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2050 NP_902332.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0387/TC:2.A.19.1.1 NP_902333.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0384 NP_902337.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1943 NP_902339.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain NP_902340.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1574 NP_902342.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902343.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902345.1 identified by sequence similarity; ORF located using Blastx/COG0457 NP_902346.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans NP_902347.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP) NP_902348.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1215/TC:9.B.32.1.3 NP_902349.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1192 NP_902350.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2076/TC:2.A.7.1.3 NP_902352.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_902355.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1123/TC:3.A.1.5.2 NP_902356.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.2 NP_902357.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0601/TC:3.A.1.5.2 NP_902358.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0747/TC:3.A.1.5.1 NP_902359.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1028 NP_902360.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1722 NP_902361.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0142 NP_902362.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate NP_902363.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_902364.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2195 NP_902366.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0312 NP_902367.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0312 NP_902368.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3558 NP_902369.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1309 NP_902373.1 identified by sequence similarity; ORF located using Blastx/COG1538/TC:1.B.17.3.1 NP_902374.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1136/TC:3.A.1.125.1 NP_902375.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0845/TC:8.A.1.2.1 NP_902376.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0583 NP_902377.1 member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria NP_902378.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0664 NP_902379.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902380.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_902381.1 identified by sequence similarity; ORF located using Blastx/COG3213 NP_902382.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0134 NP_902383.1 acts as a molecular chaperone to fold and export lipase A NP_902384.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1075 NP_902385.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1752 NP_902387.1 identified by sequence similarity; ORF located using Blastx/COG1404 NP_902389.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation NP_902390.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1024 NP_902391.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2067/TC:1.B.9.1.1 NP_902392.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1607 NP_902393.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA NP_902394.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1309 NP_902395.1 catalyzes the conversion of O-succinylhomoserine into homocysteine NP_902396.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1846 NP_902397.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3189 NP_902398.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1454 NP_902399.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2095/TC:9.B.10.1.1 NP_902400.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0833/TC:2.A.3.1.2 NP_902401.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3158/TC:2.A.72.1.1 NP_902402.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0845/TC:8.A.1.6.1 NP_902403.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0841/TC:2.A.6.2.12 NP_902404.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0841/TC:2.A.6.2.12 NP_902406.1 identified by sequence similarity; ORF located using Blastx/COG3325 NP_902408.1 identified by sequence similarity; ORF located using Blastx/COG0714 NP_902415.1 identified by sequence similarity; ORF located using Blastx/COG0625 NP_902417.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis NP_902418.1 identified by sequence similarity; ORF located using Blastx/COG2217 NP_902419.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0500 NP_902421.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0847 NP_902422.1 identified by sequence similarity; ORF located using Blastx/COG1186 NP_902423.1 identified by sequence similarity; ORF located using Blastx/COG0526 NP_902424.1 identified by sequence similarity; ORF located using Blastx/COG2207 NP_902425.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen NP_902426.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1765 NP_902427.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity NP_902428.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0488 NP_902430.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits NP_902431.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0159 NP_902432.2 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate NP_902433.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0135 NP_902434.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability NP_902435.1 identified by sequence similarity; ORF located using Blastx/COG3170/TC:3.D.3.1.1 NP_902436.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3170/TC:3.D.3.1.1 NP_902437.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0136 NP_902438.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde NP_902446.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3209 NP_902448.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis NP_902452.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D NP_902454.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate NP_902455.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1396 NP_902456.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0477/TC:2.A.1.27.1 NP_902457.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1188 NP_902458.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0179 NP_902459.1 identified by sequence similarity; ORF located using Blastx/COG3243 NP_902460.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis NP_902461.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1011 NP_902462.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0454 NP_902463.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0789 NP_902464.1 identified by sequence similarity; ORF located using Blastx/COG0655 NP_902466.1 identified by sequence similarity; ORF located using Blastx/COG0006 NP_902467.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_902468.1 identified by sequence similarity; ORF located using Blastx/COG0477/TC:2.A.1.21.1 NP_902469.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3208 NP_902472.1 identified by sequence similarity; ORF located using Blastx/COG1020 NP_902473.1 identified by sequence similarity; ORF located using Blastx/COG1020/TC:9.B.17.1.6 NP_902474.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde NP_902475.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2801 NP_902476.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834 NP_902478.1 this protein has no known enzymatic function NP_902479.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0726 NP_902480.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1028 NP_902483.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0492 NP_902484.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2840 NP_902485.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1225 NP_902486.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1875 NP_902488.1 identified by sequence similarity; ORF located using Blastx/COG0223 NP_902489.1 catalyzes the formation of 5-aminovulinate from (S)-4-amino-5-oxopentanoate NP_902491.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834 NP_902492.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0683 NP_902493.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0665 NP_902494.1 identified by sequence similarity; ORF located using Blastx/COG1012 NP_902495.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0329 NP_902496.1 identified by sequence similarity; ORF located using Blastx/COG3938 NP_902497.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2207 NP_902499.1 identified by sequence similarity; ORF located using Blastx/COG1047 NP_902500.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1524 NP_902502.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902503.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis NP_902504.1 identified by sequence similarity; ORF located using Blastx NP_902505.1 identified by sequence similarity; ORF located using Blastx NP_902506.1 identified by sequence similarity; ORF located using Blastx/COG1099 NP_902507.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3324 NP_902508.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1522 NP_902509.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1280/TC:2.A.76.1.1 NP_902510.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2262 NP_902511.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0513 NP_902513.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1752 NP_902514.1 identified by sequence similarity; ORF located using Blastx/COG1846 NP_902515.1 identified by sequence similarity; ORF located using Blastx/COG1289/TC:9.B.4.1.2 NP_902517.1 identified by sequence similarity; ORF located using Blastx/COG1566/TC:8.A.1.1.1 NP_902518.1 identified by sequence similarity; ORF located using Blastx/COG1538/TC:1.B.17.3.1 NP_902519.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1073 NP_902520.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0727 NP_902521.1 identified by sequence similarity; ORF located using Blastx/COG2081 NP_902522.1 identified by sequence similarity; ORF located using Blastx/COG0840 NP_902523.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA NP_902524.1 identified by sequence similarity; ORF located using Blastx/COG0584 NP_902525.1 catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers NP_902526.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0600/TC:3.A.1.17.1 NP_902527.1 Part of the ABC transporter complex tauABC involved in taurine import NP_902528.1 identified by sequence similarity; ORF located using Blastx/COG0715/TC:3.A.1.17.1 NP_902529.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0840 NP_902530.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1738 NP_902531.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3631 NP_902532.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2141 NP_902534.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure NP_902535.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1238 NP_902539.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3210 NP_902541.1 identified by sequence similarity; ORF located using Blastx/COG3210 NP_902542.1 identified by sequence similarity; ORF located using Blastx/COG3210 NP_902543.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2831/TC:1.B.20.1.1 NP_902544.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1760 NP_902545.1 identified by sequence similarity; ORF located using Blastx/COG1670 NP_902546.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis NP_902547.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism NP_902548.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1344 NP_902549.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1256 NP_902550.1 identified by sequence similarity; ORF located using Blastx/COG1705 NP_902551.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum NP_902552.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2063 NP_902553.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1749 NP_902554.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1749 NP_902555.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1749 NP_902556.1 identified by sequence similarity; ORF located using Blastx/COG1843 NP_902557.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1558 NP_902558.1 identified by sequence similarity; ORF located using Blastx/COG1815 NP_902559.1 identified by sequence similarity; ORF located using Blastx/COG0784 NP_902561.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2200 NP_902562.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0513 NP_902564.1 identified by sequence similarity; ORF located using Blastx NP_902565.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1940 NP_902566.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2971 NP_902567.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1653/TC:3.A.1.1.3 NP_902568.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1175 NP_902569.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0395/TC:3.A.1.1.4 NP_902571.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.6.4 NP_902572.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3228 NP_902573.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0025/TC:2.A.37.2.3 NP_902574.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity NP_902575.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2816 NP_902577.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0840 NP_902581.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2096 NP_902583.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2927 NP_902584.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides NP_902585.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0795 NP_902586.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0795 NP_902587.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein NP_902588.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1670 NP_902590.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0596 NP_902591.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2030 NP_902592.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0516 NP_902593.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1192 NP_902594.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0637 NP_902595.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0618 NP_902596.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1739 NP_902597.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902598.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0330 NP_902599.1 identified by sequence similarity; ORF located using Blastx/COG2917 NP_902600.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2350 NP_902601.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0271 NP_902602.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0760 NP_902603.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0760 NP_902604.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0760 NP_902606.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1017 NP_902607.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3531 NP_902608.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0491 NP_902609.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_902611.1 predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein NP_902612.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0726 NP_902613.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0457 NP_902614.1 identified by sequence similarity; ORF located using Blastx/COG0121 NP_902615.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2905 NP_902616.1 3'-5' exonuclease of DNA polymerase III NP_902621.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_902622.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_902623.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2202 NP_902625.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2808 NP_902626.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1609/TC:3.A.1.2.1 NP_902627.1 identified by sequence similarity; ORF located using Blastx/COG3265 NP_902628.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.14.7 NP_902630.1 converts dATP to dAMP and pyrophosphate NP_902631.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2197 NP_902632.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0668/TC:1.A.23.1.1 NP_902633.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1136 NP_902634.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0577/TC:3.A.1.125.1 NP_902635.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_902636.1 identified by sequence similarity; ORF located using Blastx/COG0791 NP_902637.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0661 NP_902638.1 identified by sequence similarity; ORF located using Blastx NP_902639.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0834/TC:3.A.1.3.10 NP_902640.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902643.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription NP_902644.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents NP_902646.1 identified by sequence similarity; ORF located using Blastx/COG1028 NP_902647.1 identified by sequence similarity; ORF located using Blastx/COG2907 NP_902648.1 identified by sequence similarity; ORF located using Blastx/COG1562 NP_902649.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1562 NP_902651.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1126 NP_902652.1 identified by sequence similarity; ORF located using Blastx/COG0765/TC:3.A.1.3.10 NP_902653.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834/TC:3.A.1.3.10 NP_902654.1 identified by sequence similarity; ORF located using Blastx/COG1705 NP_902657.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0664 NP_902658.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1360/TC:1.A.30.1.1 NP_902659.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine NP_902660.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes NP_902661.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902662.1 identified by sequence similarity; ORF located using Blastx/COG3144 NP_902663.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1516 NP_902664.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1345 NP_902665.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0419 NP_902666.1 involved in type III protein export during flagellum assembly NP_902667.1 binds to and inhibits the function of flagella specific ATPase FliI NP_902668.1 One of three proteins involved in switching the direction of the flagellar rotation NP_902669.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella NP_902670.1 identified by sequence similarity; ORF located using Blastx/COG1677 NP_902672.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1886 NP_902673.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus NP_902674.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1987/TC:3.A.6.1.2 NP_902675.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1684/TC:3.A.6.1.2 NP_902676.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export NP_902677.1 identified by sequence similarity; ORF located using Blastx/COG1298 NP_902679.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0642 NP_902680.1 identified by sequence similarity; ORF located using Blastx NP_902681.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1344 NP_902682.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902683.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1804 NP_902684.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477 NP_902685.1 identified by sequence similarity; ORF located using Blastx/TC:3.A.1.2.1 NP_902686.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1879/TC:3.A.1.2.1 NP_902687.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1172/TC:3.A.1.2.1 NP_902688.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1129 NP_902689.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source NP_902690.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0524 NP_902691.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1285/TC:9.B.20.1.1 NP_902692.1 identified by sequence similarity; ORF located using Blastx/COG1485 NP_902693.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834 NP_902694.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0625 NP_902695.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide NP_902696.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1620/TC:2.A.14.1.2 NP_902697.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0247 NP_902698.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1139 NP_902699.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1556 NP_902700.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0247 NP_902701.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3023 NP_902702.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_902706.1 identified by sequence similarity; ORF located using Blastx NP_902707.1 identified by sequence similarity; ORF located using Blastx/COG2186 NP_902708.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0451 NP_902710.1 identified by sequence similarity; ORF located using Blastx NP_902711.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1004 NP_902712.1 OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase NP_902713.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2956 NP_902714.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902715.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0776 NP_902716.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins NP_902717.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0283 NP_902718.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis NP_902719.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902720.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3038 NP_902721.1 identified by sequence similarity; ORF located using Blastx/COG1609 NP_902722.1 identified by sequence similarity; ORF located using Blastx/COG1925 NP_902723.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1105 NP_902724.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1445/TC:4.A.2.1.1 NP_902725.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2072 NP_902726.1 identified by sequence similarity; ORF located using Blastx/COG2010 NP_902727.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0625 NP_902728.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_902729.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902731.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_902732.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA NP_902733.1 identified by sequence similarity; ORF located using Blastx/COG2836 NP_902734.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0803 NP_902735.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1108/TC:3.A.1.15.2 NP_902736.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1121 NP_902737.1 identified by sequence similarity; ORF located using Blastx NP_902738.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0735 NP_902740.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_902741.1 identified by sequence similarity; ORF located using Blastx/COG3658 NP_902742.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0162 NP_902743.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1853 NP_902745.1 identified by sequence similarity; ORF located using Blastx NP_902747.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902749.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2003 NP_902750.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine NP_902751.1 catalyzes the formation of dUMP from dUTP NP_902752.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2199 NP_902753.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0737 NP_902754.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2902 NP_902755.1 identified by sequence similarity; ORF located using Blastx/COG0834/TC:3.A.1.3.11 NP_902756.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0765/TC:3.A.1.3.11 NP_902757.1 identified by sequence similarity; ORF located using Blastx/COG0765/TC:3.A.1.3.11 NP_902758.1 identified by sequence similarity; ORF located using Blastx/COG0693 NP_902759.1 identified by sequence similarity; ORF located using Blastx/COG0642 NP_902762.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0546 NP_902763.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway NP_902764.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1686 NP_902765.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2921 NP_902766.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein NP_902767.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group NP_902770.1 identified by sequence similarity; ORF located using Blastx/COG0474/TC:3.A.3.4.1 NP_902771.1 identified by sequence similarity; ORF located using Blastx/COG0028 NP_902772.1 identified by sequence similarity; ORF located using Blastx/COG1232 NP_902773.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1208 NP_902774.1 identified by sequence similarity; ORF located using Blastx/COG3203 NP_902776.1 identified by sequence similarity; ORF located using Blastx/COG0642 NP_902777.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0745 NP_902778.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0861 NP_902779.1 metalloprotease NP_902780.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_902781.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2165 NP_902782.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2165 NP_902783.1 identified by sequence similarity; ORF located using Blastx NP_902784.1 identified by sequence similarity; ORF located using Blastx NP_902785.1 identified by sequence similarity; ORF located using Blastx/COG3419 NP_902786.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2165 NP_902787.1 identified by sequence similarity; ORF located using Blastx NP_902789.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1651 NP_902790.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0654 NP_902791.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0654 NP_902792.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0006 NP_902793.1 identified by sequence similarity; ORF located using Blastx NP_902794.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1684/TC:3.A.6.1.2 NP_902795.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1987/TC:3.A.6.1.2 NP_902796.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_902797.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus NP_902798.1 identified by sequence similarity; ORF located using Blastx/TC:3.A.6.1.2 NP_902799.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1886 NP_902800.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation NP_902801.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1580 NP_902803.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2882 NP_902804.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1157/TC:3.A.6.1.2 NP_902805.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1536 NP_902806.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1766/TC:3.A.6.1.2 NP_902807.1 forms a junction between the M-ring and FlgB during flagella biosynthesis NP_902808.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2204 NP_902809.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2201 NP_902810.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0394 NP_902813.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_902814.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_902815.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0385 NP_902816.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0796 NP_902817.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3535 NP_902818.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2204 NP_902820.1 identified by sequence similarity; ORF located using Blastx/COG0491 NP_902822.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion NP_902823.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1686 NP_902824.1 identified by sequence similarity; ORF located using Blastx/COG0583 NP_902825.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0456 NP_902827.1 DLP12 prophage; similar to PEBP/RK1P protein family in eukaryotes that inhibits MEK phosphorylation by Raf-1; crystal structure suggests similar properties but exact function is unknown NP_902828.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2207 NP_902829.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0346 NP_902830.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1846 NP_902831.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1130 NP_902832.1 identified by sequence similarity; ORF located using Blastx/COG1178/TC:3.A.1.19.1 NP_902833.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1670 NP_902834.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1840/TC:3.A.1.19.1 NP_902835.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902836.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0056 NP_902837.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834/TC:3.A.1.3.10 NP_902839.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902840.1 identified by sequence similarity; ORF located using Blastx/COG2049 NP_902841.1 identified by sequence similarity; ORF located using Blastx NP_902842.1 identified by sequence similarity; ORF located using Blastx/COG1984 NP_902843.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1540 NP_902844.1 identified by sequence similarity; ORF located using Blastx/COG0609 NP_902845.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_902846.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2039 NP_902848.1 identified by sequence similarity; ORF located using Blastx/COG0662 NP_902849.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2148 NP_902850.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin NP_902851.1 identified by sequence similarity; ORF located using Blastx/COG1522 NP_902852.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3690 NP_902853.1 identified by sequence similarity; ORF located using Blastx/COG2067/TC:1.B.9.1.1 NP_902854.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0652 NP_902855.1 identified by sequence similarity; ORF located using Blastx/COG0652 NP_902856.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine NP_902858.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1629/TC:1.B.14.1.2 NP_902859.1 identified by sequence similarity; ORF located using Blastx/COG0037 NP_902860.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein NP_902861.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1652 NP_902862.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2199 NP_902863.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1495/TC:5.A.2.1.1 NP_902864.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1752 NP_902865.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0122 NP_902866.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3145 NP_902867.1 identified by sequence similarity; ORF located using Blastx NP_902868.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3028 NP_902869.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis NP_902870.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0429 NP_902871.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2050 NP_902873.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2206 NP_902874.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0412 NP_902875.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0643 NP_902876.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1278 NP_902877.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3310 NP_902878.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0204 NP_902880.1 dGTPase family type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate NP_902881.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0406 NP_902882.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0229 NP_902885.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902886.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2020 NP_902887.1 identified by sequence similarity; ORF located using Blastx/COG2217 NP_902888.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0009 NP_902890.1 identified by sequence similarity; ORF located using Blastx NP_902891.1 Catalyzes the transfer of electrons from NADH to ubiquinone NP_902892.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_902893.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1309 NP_902894.1 identified by sequence similarity; ORF located using Blastx/COG2907 NP_902895.1 identified by sequence similarity; ORF located using Blastx/COG3496 NP_902896.1 identified by sequence similarity; ORF located using Blastx/COG2230 NP_902897.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1028 NP_902898.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902899.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3046 NP_902900.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3040 NP_902902.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0234 NP_902903.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth NP_902904.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_902905.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0789 NP_902906.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0693 NP_902907.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1902 NP_902908.1 identified by sequence similarity; ORF located using Blastx/COG1902 NP_902909.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_902910.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1280/TC:2.A.76.1.2 NP_902911.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2606 NP_902912.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902913.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.3.12 NP_902914.1 identified by sequence similarity; ORF located using Blastx/COG0647 NP_902915.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2239/TC:9.A.19.2.1 NP_902916.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3437 NP_902917.1 identified by sequence similarity; ORF located using Blastx NP_902918.1 identified by sequence similarity; ORF located using Blastx/COG0784 NP_902919.1 catalyzes the formation of L-proline from L-ornithine NP_902920.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1171 NP_902921.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2964 NP_902922.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_902923.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1741 NP_902924.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_902925.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902926.1 identified by sequence similarity; ORF located using Blastx/COG2207 NP_902927.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_902928.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2957 NP_902929.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0642 NP_902930.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_902932.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0021 NP_902937.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902938.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902939.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0644 NP_902941.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0446 NP_902942.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0654 NP_902943.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902944.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1233 NP_902945.1 identified by sequence similarity; ORF located using Blastx NP_902946.1 identified by sequence similarity; ORF located using Blastx/COG2353 NP_902947.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2353 NP_902948.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3038 NP_902950.1 identified by sequence similarity; ORF located using Blastx/COG3162 NP_902951.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake NP_902952.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA NP_902953.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902954.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0500 NP_902955.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_902956.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902958.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0599 NP_902959.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_902960.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0413 NP_902961.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_902962.1 Involved in the electron transport chain NP_902963.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0177 NP_902964.1 identified by sequence similarity; ORF located using Blastx/COG0265 NP_902965.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0262 NP_902966.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0531/TC:2.A.3.3.1 NP_902968.1 identified by sequence similarity; ORF located using GeneMark/Blastx/TC:1.B.3.1.1 NP_902969.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0366 NP_902970.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1264/TC:4.A.1.2.4 NP_902971.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_902972.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2188 NP_902973.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_902974.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle NP_902975.1 identified by sequence similarity; ORF located using Blastx/COG3471 NP_902976.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0625 NP_902978.1 identified by sequence similarity; ORF located using Blastx NP_902979.1 identified by sequence similarity; ORF located using Blastx/COG0834 NP_902981.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2841 NP_902982.1 identified by sequence similarity; ORF located using Blastx/COG0330 NP_902983.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0330 NP_902984.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1914/TC:2.A.55.3.1 NP_902985.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0861 NP_902986.1 identified by sequence similarity; ORF located using Blastx/COG0178 NP_902987.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0747/TC:3.A.1.5.4 NP_902990.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_902991.1 identified by sequence similarity; ORF located using Blastx/COG0840 NP_902993.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3397 NP_902994.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3038 NP_902995.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2982 NP_902996.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1226/TC:2.A.37.1.2 NP_902997.1 identified by sequence similarity; ORF located using Blastx/COG0517 NP_902998.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1778 NP_902999.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3117 NP_903000.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1934 NP_903001.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1137 NP_903002.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen NP_903003.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1544 NP_903004.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1762 NP_903005.2 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system NP_903006.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1660 NP_903007.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate NP_903008.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0063 NP_903009.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0697/TC:2.A.7.3.4 NP_903010.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0642 NP_903011.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0745 NP_903012.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1272/TC:9.B.30.1.1 NP_903013.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP NP_903014.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS NP_903015.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2835 NP_903016.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate NP_903017.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0848/TC:2.C.1.1.1 NP_903018.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0811/TC:2.C.1.2.1 NP_903020.1 identified by sequence similarity; ORF located using Blastx NP_903021.1 identified by sequence similarity; ORF located using Blastx/COG0640 NP_903022.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate NP_903023.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0739/TC:2.C.1.2.1 NP_903024.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0793 NP_903025.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis NP_903026.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2924 NP_903027.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate NP_903028.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2839 NP_903029.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903030.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence NP_903031.1 identified by sequence similarity; ORF located using Blastx/COG0834 NP_903032.1 identified by sequence similarity; ORF located using Blastx/COG0739 NP_903033.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_903034.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2899 NP_903036.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane NP_903037.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3029 NP_903038.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB NP_903039.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB NP_903040.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters NP_903041.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2941 NP_903042.1 identified by sequence similarity; ORF located using Blastx/COG0221 NP_903045.1 blocks the formation of polar Z-ring septums NP_903046.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2894 NP_903047.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0851 NP_903048.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_903050.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0339 NP_903051.1 identified by sequence similarity; ORF located using Blastx/COG0339 NP_903053.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1846 NP_903054.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus NP_903055.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0494 NP_903056.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1187 NP_903057.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1386 NP_903058.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_903059.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0324 NP_903062.1 identified by sequence similarity; ORF located using Blastx NP_903063.1 identified by sequence similarity; ORF located using Blastx/COG0251 NP_903064.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0626 NP_903065.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0517 NP_903066.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0500 NP_903067.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1398 NP_903068.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1241 NP_903069.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2193 NP_903071.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0494 NP_903072.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs NP_903073.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.36.1 NP_903075.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0583 NP_903076.1 identified by sequence similarity; ORF located using Blastx/COG1028 NP_903077.1 identified by sequence similarity; ORF located using Blastx/COG0287 NP_903079.1 identified by sequence similarity; ORF located using Blastx/COG1301/TC:2.A.23.3.3 NP_903080.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate NP_903081.1 catalyzes the formation of anthranilate and glutamate from chorismate and glutamine NP_903082.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP NP_903083.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0236 NP_903084.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis NP_903085.1 identified by sequence similarity; ORF located using Blastx/COG0331 NP_903086.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-ACP synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs NP_903087.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY NP_903088.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not NP_903089.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1399 NP_903090.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell NP_903091.1 identified by sequence similarity; ORF located using Blastx/COG0313 NP_903092.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate NP_903094.1 identified by sequence similarity; ORF located using Blastx/COG3203 NP_903095.1 identified by sequence similarity; ORF located using Blastx/COG1309 NP_903096.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0747/TC:3.A.1.5.5 NP_903097.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2199 NP_903098.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0500 NP_903099.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine NP_903100.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor NP_903101.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein NP_903102.1 identified by sequence similarity; ORF located using Blastx/COG0531/TC:2.A.3.2.2 NP_903103.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu NP_903104.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1146 NP_903105.1 identified by sequence similarity; ORF located using Blastx/COG1871 NP_903106.1 identified by sequence similarity; ORF located using Blastx/COG2201 NP_903107.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1352 NP_903108.1 identified by sequence similarity; ORF located using Blastx/COG2202 NP_903111.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0835 NP_903112.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0643 NP_903113.1 identified by sequence similarity; ORF located using Blastx/COG0784 NP_903114.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1366 NP_903115.1 identified by sequence similarity; ORF located using Blastx NP_903116.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_903117.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_903118.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0784 NP_903119.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation NP_903120.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0643 NP_903121.1 identified by sequence similarity; ORF located using Blastx NP_903122.1 identified by sequence similarity; ORF located using Blastx/COG1214 NP_903123.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0456 NP_903124.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1573 NP_903125.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif NP_903126.1 required for 70S ribosome assembly NP_903127.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer NP_903129.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0148 NP_903130.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2919 NP_903131.1 identified by sequence similarity; ORF located using Blastx/COG1196 NP_903132.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2914/TC:3.D.6.1.1 NP_903133.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2867 NP_903134.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation NP_903135.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway NP_903136.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0477/TC:2.A.1.6.3 NP_903137.1 identified by sequence similarity; ORF located using Blastx NP_903138.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0477 NP_903141.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0590 NP_903143.1 identified by sequence similarity; ORF located using Blastx NP_903144.1 identified by sequence similarity; ORF located using Blastx/COG0500 NP_903146.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1838 NP_903147.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1285/TC:9.B.20.1.2 NP_903148.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1914/TC:2.A.55.3.1 NP_903149.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0697/TC:2.A.7.3.4 NP_903150.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2207 NP_903151.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0415 NP_903152.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_903153.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3238 NP_903154.1 identified by sequence similarity; ORF located using Blastx/COG3238 NP_903155.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1742/TC:9.B.45.1.1 NP_903156.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0346 NP_903157.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1959 NP_903158.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine NP_903159.1 identified by sequence similarity; ORF located using Blastx/COG3397 NP_903160.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3387 NP_903163.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_903164.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3256/TC:3.D.4.5.1 NP_903165.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2215 NP_903166.1 identified by sequence similarity; ORF located using Blastx/COG1937 NP_903168.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1409 NP_903169.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1309 NP_903170.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0778 NP_903171.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide NP_903172.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1505 NP_903173.1 identified by sequence similarity; ORF located using Blastx/COG0784 NP_903174.1 identified by sequence similarity; ORF located using Blastx NP_903175.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0784 NP_903176.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903177.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0603 NP_903178.1 identified by sequence similarity; ORF located using Blastx/COG0720 NP_903179.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0602 NP_903183.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3220 NP_903184.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903185.1 identified by sequence similarity; ORF located using Blastx/COG3229 NP_903186.1 identified by sequence similarity; ORF located using Blastx/COG0560 NP_903188.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2896 NP_903189.1 identified by sequence similarity; ORF located using Blastx NP_903190.1 converts acetoacetate to acetone and carbon dioxide NP_903192.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0673 NP_903193.1 identified by sequence similarity; ORF located using Blastx/COG0508 NP_903194.1 identified by sequence similarity; ORF located using Blastx/COG0477 NP_903195.1 identified by sequence similarity; ORF located using Blastx NP_903196.1 identified by sequence similarity; ORF located using Blastx/COG1858 NP_903197.1 identified by sequence similarity; ORF located using Blastx/COG0346 NP_903198.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis NP_903199.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine NP_903200.1 identified by sequence similarity; ORF located using Blastx/COG0330 NP_903201.1 identified by sequence similarity; ORF located using Blastx/COG0330 NP_903202.1 identified by sequence similarity; ORF located using Blastx/COG2262 NP_903203.1 identified by sequence similarity; ORF located using Blastx/COG1923 NP_903204.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains NP_903205.1 identified by sequence similarity; ORF located using Blastx/COG1520 NP_903206.1 identified by sequence similarity; ORF located using Blastx/COG2976 NP_903207.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG NP_903208.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis NP_903209.1 identified by sequence similarity; ORF located using Blastx/COG1426 NP_903210.1 identified by sequence similarity; ORF located using Blastx/COG0457 NP_903211.1 identified by sequence similarity; ORF located using Blastx/COG0820 NP_903212.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate NP_903213.1 identified by sequence similarity; ORF located using Blastx/COG0508 NP_903215.1 identified by sequence similarity; ORF located using Blastx NP_903216.1 identified by sequence similarity; ORF located using Blastx NP_903218.1 Required for efficient pilin antigenic variation NP_903219.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0753 NP_903220.1 identified by sequence similarity; ORF located using Blastx/COG3384 NP_903221.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; subclass 1A is a dimer formed by two identical PyrD subunits each containing an FMN group NP_903222.1 identified by sequence similarity; ORF located using Blastx/COG2193 NP_903223.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0370/TC:9.A.8.1.2 NP_903224.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis NP_903225.1 identified by sequence similarity; ORF located using Blastx/COG0386 NP_903228.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0123 NP_903229.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3012 NP_903231.1 identified by sequence similarity; ORF located using Blastx/COG0031 NP_903232.1 identified by sequence similarity; ORF located using Blastx/COG1226/TC:1.A.1.2.3 NP_903233.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2110 NP_903234.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides NP_903237.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway NP_903238.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis NP_903239.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme NP_903240.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities NP_903241.1 identified by sequence similarity; ORF located using Blastx/COG2885/TC:1.B.6.1.1 NP_903242.1 identified by sequence similarity; ORF located using Blastx NP_903243.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0155 NP_903244.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite NP_903245.1 identified by sequence similarity; ORF located using Blastx/COG0583 NP_903246.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1028 NP_903247.1 identified by sequence similarity; ORF located using Blastx/COG0488 NP_903248.1 identified by sequence similarity; ORF located using Blastx/COG0329 NP_903249.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903250.1 identified by sequence similarity; ORF located using Blastx NP_903251.1 identified by sequence similarity; ORF located using Blastx/COG2850 NP_903252.1 identified by sequence similarity; ORF located using Blastx/COG1047 NP_903253.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0755 NP_903254.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2890 NP_903255.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2239/TC:9.A.19.1.1 NP_903256.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan NP_903257.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0169 NP_903258.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0607 NP_903259.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0174 NP_903260.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0419 NP_903261.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0642 NP_903262.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2204 NP_903264.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0346 NP_903267.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0031 NP_903268.1 identified by sequence similarity; ORF located using Blastx/COG0318 NP_903270.1 identified by sequence similarity; ORF located using Blastx/COG0477/TC:2.A.1.15.1 NP_903273.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_903274.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine NP_903275.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2062 NP_903276.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1346 NP_903277.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1380/TC:1.E.14.1.1 NP_903278.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0382/TC:3.D.4.4.1 NP_903280.1 identified by sequence similarity; ORF located using Blastx NP_903281.1 identified by sequence similarity; ORF located using Blastx/COG0494 NP_903282.1 identified by sequence similarity; ORF located using Blastx/COG2607 NP_903283.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0560 NP_903284.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0593 NP_903285.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis NP_903286.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0299 NP_903287.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0810/TC:3.D.3.1.1 NP_903288.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0144 NP_903289.1 identified by sequence similarity; ORF located using Blastx/COG0038/TC:1.A.11.5.1 NP_903290.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0278 NP_903291.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate NP_903292.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0454 NP_903294.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2233/TC:2.A.40.1.1 NP_903296.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_903298.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0454 NP_903299.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_903300.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_903301.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2207 NP_903303.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1335 NP_903305.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB NP_903306.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_903307.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk NP_903308.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit NP_903309.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2965 NP_903310.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 NP_903312.1 identified by sequence similarity; ORF located using Blastx/COG1937 NP_903313.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2132/TC:9.A.10.1.1 NP_903314.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0483 NP_903315.1 identified by sequence similarity; ORF located using Blastx/COG0565 NP_903316.1 identified by sequence similarity; ORF located using Blastx NP_903317.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0664 NP_903318.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III NP_903319.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0840 NP_903320.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1115/TC:2.A.25.1.2 NP_903321.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834/TC:3.A.1.3.2 NP_903322.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate NP_903323.1 part of the UgpABCE glycerol-3-phosphate uptake system NP_903324.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0395/TC:3.A.1.1.3 NP_903325.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1175/TC:3.A.1.1.3 NP_903326.1 with UgpACE is involved in the uptake of glycerol-3-phosphate NP_903327.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1294 NP_903328.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1271 NP_903329.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1510 NP_903330.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2379 NP_903331.1 This protein performs the mismatch recognition step during the DNA repair process NP_903333.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1187 NP_903334.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2838 NP_903335.1 identified by sequence similarity; ORF located using Blastx/COG0583 NP_903336.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1670 NP_903337.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1278 NP_903338.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2127 NP_903339.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0542 NP_903340.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0582 NP_903341.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0350 NP_903342.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site NP_903343.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0336 NP_903344.1 Essential for efficient processing of 16S rRNA NP_903345.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity NP_903346.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0454 NP_903347.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1230/TC:2.A.4.1.1 NP_903348.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate NP_903349.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate NP_903350.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2518 NP_903351.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0739 NP_903352.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses NP_903353.1 identified by sequence similarity; ORF located using Blastx/COG1305 NP_903354.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1721 NP_903355.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0714 NP_903356.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0123 NP_903357.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0681 NP_903358.1 identified by sequence similarity; ORF located using Blastx/COG0344/TC:9.B.31.1.1 NP_903359.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1539 NP_903361.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2346 NP_903362.1 identified by sequence similarity; ORF located using Blastx/COG0665 NP_903363.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1352 NP_903364.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0316 NP_903365.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate NP_903366.1 forms a direct contact with the tRNA during translation NP_903367.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit NP_903368.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0813 NP_903369.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose NP_903370.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate NP_903371.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate NP_903372.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0317 NP_903373.1 identified by sequence similarity; ORF located using Blastx/COG1194 NP_903374.1 identified by sequence similarity; ORF located using Blastx/COG0609 NP_903375.1 identified by sequence similarity; ORF located using Blastx/COG0116 NP_903376.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2095/TC:9.B.10.1.2 NP_903377.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1301/TC:2.A.23.1.3 NP_903378.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2077 NP_903379.1 catalyzes the formation of phosphoenolpyruvate from pyruvate NP_903380.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1806 NP_903381.1 involved in start site selection during the initiation of translation NP_903383.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2207 NP_903385.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA NP_903387.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3045 NP_903388.1 identified by sequence similarity; ORF located using Blastx/COG1235 NP_903390.1 identified by sequence similarity; ORF located using Blastx/COG0084 NP_903391.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3215 NP_903392.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA NP_903393.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) NP_903394.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1559 NP_903396.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0725/TC:3.A.1.8.1 NP_903397.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0555/TC:3.A.1.8.1 NP_903399.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1345/TC:1.B.12.1.1 NP_903400.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2186 NP_903401.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2807/TC:2.A.1.17.1 NP_903403.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0577 NP_903404.1 identified by sequence similarity; ORF located using Blastx/COG1136 NP_903405.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2755 NP_903406.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.2.21 NP_903407.1 identified by sequence similarity; ORF located using Blastx/COG2199 NP_903408.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2199 NP_903409.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0450 NP_903410.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes NP_903411.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2928 NP_903412.1 identified by sequence similarity; ORF located using Blastx/COG2331 NP_903413.1 Catalyzes a key regulatory step in fatty acid biosynthesis NP_903414.1 catalyzes the formation of acetyl phosphate from acetyl-CoA and phosphate; can also act with other short-chain acyl-CoAs NP_903415.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0282 NP_903416.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group NP_903417.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase NP_903418.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0728/TC:2.A.66.4.1 NP_903419.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1266 NP_903420.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis NP_903421.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0564 NP_903423.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2872 NP_903424.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2258 NP_903425.1 mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation NP_903426.1 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase NP_903427.1 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding NP_903429.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2821 NP_903432.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria NP_903433.1 synthesizes RNA primers at the replication forks NP_903434.1 identified by sequence similarity; ORF located using Blastx/COG1610 NP_903435.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA NP_903436.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate NP_903437.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2104 NP_903438.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0317 NP_903439.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1758 NP_903440.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0194 NP_903441.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2252/TC:2.A.40.3.1 NP_903442.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis NP_903445.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903446.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1695 NP_903450.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP NP_903451.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0078 NP_903452.1 catalyzes the degradation of arginine to citruline and ammonia NP_903453.1 identified by sequence similarity; ORF located using Blastx/COG0531/TC:2.A.3.2.3 NP_903454.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose NP_903455.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0451 NP_903456.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine NP_903457.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0386 NP_903458.1 identified by sequence similarity; ORF located using Blastx NP_903459.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1052 NP_903460.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0477 NP_903461.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0545 NP_903462.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0586 NP_903463.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0787 NP_903464.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2374 NP_903465.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate NP_903466.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0294 NP_903467.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0465 NP_903468.1 identified by sequence similarity; ORF located using Blastx NP_903469.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1534 NP_903470.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903471.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0782 NP_903472.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0458 NP_903473.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1280/TC:2.A.76.1.1 NP_903474.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers NP_903475.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/TC:3.A.15.1.1 NP_903476.1 identified by sequence similarity; ORF located using Blastx/COG3297 NP_903477.1 identified by sequence similarity; ORF located using Blastx/COG3156/TC:3.A.15.1.1 NP_903478.1 identified by sequence similarity; ORF located using Blastx/COG2165 NP_903479.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2165/TC:3.A.15.1.1 NP_903480.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2165 NP_903481.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2165/TC:3.A.15.1.1 NP_903482.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1459/TC:3.A.15.1.1 NP_903483.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2804 NP_903484.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1450/TC:1.B.22.1.2 NP_903486.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1960 NP_903487.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2025 NP_903488.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2086 NP_903489.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2030 NP_903490.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1600 NP_903491.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0802 NP_903492.1 identified by sequence similarity; ORF located using Blastx/COG0860 NP_903493.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3024 NP_903494.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_903495.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0237 NP_903496.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1989/TC:3.A.15.1.1 NP_903497.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1459/TC:3.A.15.1.1 NP_903498.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2804/TC:3.A.15.1.1 NP_903499.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3203/TC:1.B.33.2.1 NP_903501.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1555/TC:3.A.11.1.1 NP_903502.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0755 NP_903503.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0541/TC:3.A.5.1.1 NP_903504.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide NP_903506.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0841/TC:2.A.6.1.2 NP_903507.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0845/TC:8.A.1.2.1 NP_903508.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1538/TC:1.B.17.3.3 NP_903509.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0243/TC:5.A.3.2.1 NP_903510.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0437/TC:5.A.3.2.1 NP_903511.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2864/TC:5.A.3.2.1 NP_903512.1 identified by sequence similarity; ORF located using Blastx/COG3058 NP_903513.1 response regulator in two-component regulatory system with RstB NP_903514.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0642 NP_903515.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0477 NP_903516.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3591 NP_903517.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0689 NP_903518.1 identified by sequence similarity; ORF located using Blastx/COG0631 NP_903519.1 identified by sequence similarity; ORF located using Blastx/COG0515 NP_903520.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1561 NP_903521.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0582 NP_903527.1 identified by sequence similarity; ORF located using Blastx NP_903531.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903532.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903535.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1032 NP_903536.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0840 NP_903539.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0776 NP_903540.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2084 NP_903541.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2257 NP_903545.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1516 NP_903546.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1345 NP_903547.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1334 NP_903548.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1344 NP_903549.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1344 NP_903550.1 identified by sequence similarity; ORF located using Blastx/COG0463 NP_903551.1 identified by sequence similarity; ORF located using Blastx/COG0457 NP_903553.1 identified by sequence similarity; ORF located using Blastx/COG0463 NP_903554.1 identified by sequence similarity; ORF located using Blastx/COG0451 NP_903556.1 identified by sequence similarity; ORF located using Blastx/COG0535 NP_903558.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0500 NP_903559.1 identified by sequence similarity; ORF located using Blastx/COG0028 NP_903560.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0662 NP_903561.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0399 NP_903562.1 identified by sequence similarity; ORF located using Blastx/COG0451 NP_903563.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1208 NP_903564.1 Catalyzes the phosphorolytic cleavage of 6-oxopurine nucleosides NP_903566.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1629/TC:1.B.14.2.4 NP_903567.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903568.1 identified by sequence similarity; ORF located using Blastx/COG0609 NP_903569.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1120 NP_903570.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively NP_903571.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1210 NP_903572.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0457 NP_903573.1 identified by sequence similarity; ORF located using Blastx/COG0272 NP_903574.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903575.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1846 NP_903576.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0810/TC:2.C.1.1.1 NP_903577.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2223 NP_903578.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1196 NP_903579.1 identified by sequence similarity; ORF located using Blastx/COG1678 NP_903580.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function NP_903582.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1161 NP_903583.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3530 NP_903584.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3671 NP_903586.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0644 NP_903587.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1804 NP_903588.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1960 NP_903589.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1414 NP_903590.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0517 NP_903591.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate NP_903592.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1309 NP_903593.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0845/TC:8.A.1.6.1 NP_903594.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0841/TC:2.A.6.2.7 NP_903595.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1538/TC:1.B.17.1.1 NP_903596.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0160 NP_903597.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1012 NP_903600.1 catalyzes the formation of oxaloacetate from L-aspartate NP_903602.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3019 NP_903605.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2173 NP_903606.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0747/TC:3.A.1.5.5 NP_903607.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3608 NP_903609.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903610.1 identified by sequence similarity; ORF located using Blastx NP_903611.1 identified by sequence similarity; ORF located using Blastx NP_903612.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0577/TC:3.A.1.125.1 NP_903613.1 identified by sequence similarity; ORF located using Blastx/COG1136 NP_903614.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2084 NP_903615.1 identified by sequence similarity; ORF located using Blastx/COG1063 NP_903616.1 identified by sequence similarity; ORF located using Blastx/COG0446 NP_903617.1 identified by sequence similarity; ORF located using Blastx/COG1028 NP_903618.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0304 NP_903619.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0304 NP_903620.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0764 NP_903622.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0500 NP_903623.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0451 NP_903624.1 identified by sequence similarity; ORF located using Blastx/COG0142 NP_903626.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0382 NP_903627.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0647 NP_903628.1 identified by sequence similarity; ORF located using Blastx/COG0142 NP_903629.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0367 NP_903630.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1608 NP_903631.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1891 NP_903633.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3515 NP_903634.1 identified by sequence similarity; ORF located using Blastx/TC:1.C.12.1.3 NP_903635.1 identified by sequence similarity; ORF located using Blastx/COG0542 NP_903636.1 identified by sequence similarity; ORF located using Blastx NP_903637.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3520 NP_903639.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3519 NP_903641.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903642.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903643.1 identified by sequence similarity; ORF located using Blastx NP_903644.1 identified by sequence similarity; ORF located using Blastx NP_903645.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3501 NP_903647.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3157 NP_903648.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3517 NP_903649.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3516 NP_903650.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3523 NP_903651.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0004 NP_903652.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3521 NP_903653.1 identified by sequence similarity; ORF located using Blastx/COG3522 NP_903654.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3455 NP_903655.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3518 NP_903656.1 identified by sequence similarity; ORF located using Blastx/COG3501 NP_903657.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903660.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0469 NP_903662.1 converts protoheme IX and farnesyl diphosphate to heme O NP_903663.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3125/TC:3.D.4.5.1 NP_903664.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1845/TC:3.D.4.5.1 NP_903665.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0843/TC:3.D.4.5.1 NP_903666.1 identified by sequence similarity; ORF located using Blastx/COG1622/TC:3.D.4.5.1 NP_903668.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0526 NP_903669.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3087 NP_903670.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0606 NP_903671.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2960 NP_903672.1 identified by sequence similarity; ORF located using Blastx/COG0347 NP_903673.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0004/TC:2.A.49.1.1 NP_903674.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2969 NP_903675.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0625 NP_903676.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2857/TC:3.D.3.2.1 NP_903677.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1290/TC:3.E.2.1.1 NP_903678.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0723/TC:3.D.3.1.1 NP_903679.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0327 NP_903680.1 identified by sequence similarity; ORF located using Blastx/COG1088 NP_903681.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1091 NP_903682.1 identified by sequence similarity; ORF located using Blastx/COG1209 NP_903683.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1898 NP_903684.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0459 NP_903685.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring NP_903686.1 identified by sequence similarity; ORF located using Blastx/COG0472 NP_903687.1 identified by sequence similarity; ORF located using Blastx/COG3293 NP_903689.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0677 NP_903690.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0381 NP_903691.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0438 NP_903692.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903694.1 identified by sequence similarity; ORF located using Blastx NP_903696.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG2244/TC:2.A.66.2.5 NP_903698.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1083 NP_903699.1 identified by sequence similarity; ORF located using Blastx NP_903700.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0517 NP_903701.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2089 NP_903703.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0381 NP_903704.1 identified by sequence similarity; ORF located using Blastx/COG0399 NP_903705.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0451 NP_903707.2 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate NP_903708.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate NP_903709.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1502 NP_903710.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1982 NP_903711.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2202 NP_903712.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1280/TC:2.A.76.1.1 NP_903713.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1670 NP_903714.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1280/TC:2.A.76.1.1 NP_903715.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1018 NP_903717.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1446 NP_903718.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2070 NP_903719.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0626 NP_903721.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1022 NP_903722.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0765/TC:3.A.1.3.10 NP_903723.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0834/TC:3.A.1.3.10 NP_903724.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3206/TC:8.A.3.3.1 NP_903725.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 NP_903726.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation NP_903727.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1825 NP_903728.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP NP_903729.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis NP_903730.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein NP_903731.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0457 NP_903732.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases NP_903733.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0204 NP_903734.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903735.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2845 NP_903736.1 identified by sequence similarity; ORF located using Blastx/COG1696/TC:2.A.50.1.1 NP_903737.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP NP_903738.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0210 NP_903739.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3245 NP_903740.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1132 NP_903742.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0494 NP_903743.1 identified by sequence similarity; ORF located using Blastx/COG0507 NP_903744.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0834 NP_903745.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903746.1 identified by sequence similarity; ORF located using Blastx/COG1074 NP_903747.1 identified by sequence similarity; ORF located using Blastx NP_903748.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3094 NP_903749.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2165 NP_903751.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903753.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2165 NP_903754.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0826 NP_903755.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0826 NP_903756.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3154 NP_903757.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2199 NP_903758.1 identified by sequence similarity; ORF located using Blastx/COG0583 NP_903760.1 identified by sequence similarity; ORF located using Blastx/COG2771 NP_903761.1 autoinducer synthase, quorum sensing controlled system; identified by sequence similarity; ORF located using Blastx/COG3916 NP_903762.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1012 NP_903764.1 identified by sequence similarity; ORF located using Blastx/COG1670 NP_903765.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0607 NP_903766.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1167 NP_903767.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1683 NP_903768.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1011 NP_903769.1 identified by sequence similarity; ORF located using Blastx/COG0687/TC:3.A.1.11.2 NP_903770.1 identified by sequence similarity; ORF located using Blastx/COG1177/TC:3.A.1.11.1 NP_903771.1 identified by sequence similarity; ORF located using Blastx/COG1176/TC:3.A.1.11.1 NP_903772.1 identified by sequence similarity; ORF located using Blastx/COG1130 NP_903773.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3047 NP_903774.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0043 NP_903777.1 identified by sequence similarity; ORF located using Blastx NP_903778.1 identified by sequence similarity; ORF located using Blastx/COG3171 NP_903779.1 identified by sequence similarity; ORF located using Blastx/COG1434 NP_903782.1 catalyzes the formation of fumarate from aspartate NP_903783.1 identified by sequence similarity; ORF located using Blastx/COG0583 NP_903785.1 identified by sequence similarity; ORF located using Blastx/COG1086 NP_903786.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0454 NP_903787.1 identified by sequence similarity; ORF located using Blastx/COG2148 NP_903788.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0399 NP_903789.1 identified by sequence similarity; ORF located using Blastx/COG0438 NP_903790.1 identified by sequence similarity; ORF located using Blastx/COG0438 NP_903793.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2244/TC:2.A.66.2.2 NP_903794.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0399 NP_903795.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0110 NP_903797.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0673 NP_903798.1 identified by sequence similarity; ORF located using Blastx/COG1434 NP_903799.1 identified by sequence similarity; ORF located using Blastx/COG0677 NP_903800.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine NP_903801.1 identified by sequence similarity; ORF located using Blastx/COG0037 NP_903802.1 Involved in pteridine salvage and antifolate resistance NP_903803.1 identified by sequence similarity; ORF located using Blastx NP_903805.1 identified by sequence similarity; ORF located using Blastx/COG0840 NP_903806.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1960 NP_903809.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1960 NP_903811.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2207 NP_903812.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1024 NP_903813.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0583 NP_903814.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_903815.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0697/TC:2.A.7.3.3 NP_903816.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1187 NP_903817.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0475/TC:2.A.37.3.1 NP_903818.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903819.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) NP_903820.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903821.1 identified by sequence similarity; ORF located using Blastx/COG1702 NP_903822.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0319 NP_903823.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1253 NP_903824.1 Transfers the fatty acyl group on membrane lipoproteins NP_903825.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0840 NP_903826.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840/TC:8.A.3.1.1 NP_903827.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3217 NP_903828.1 catalyzes the formation of glutamate from glutamine NP_903829.1 is a component of the macrolide binding site in the peptidyl transferase center NP_903830.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme NP_903831.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination NP_903832.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 NP_903833.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA NP_903834.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif NP_903835.2 stimulates the activities of the other two initiation factors, IF-2 and IF-3 NP_903836.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase NP_903837.1 late assembly protein NP_903838.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 NP_903839.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance NP_903840.1 binds 5S rRNA along with protein L5 and L25 NP_903841.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance NP_903842.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit NP_903843.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif NP_903844.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 NP_903845.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel NP_903846.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase NP_903847.1 primary binding protein; helps mediate assembly; involved in translation fidelity NP_903848.1 one of the stabilizing components for the large ribosomal subunit NP_903849.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e NP_903850.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation NP_903851.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center NP_903852.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA NP_903853.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation NP_903854.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel NP_903855.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA NP_903856.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin NP_903857.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex NP_903858.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu NP_903859.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene NP_903860.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit NP_903861.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance NP_903862.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter NP_903863.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme NP_903864.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors NP_903865.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit NP_903866.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA NP_903867.1 binds directly to 23S ribosomal RNA NP_903868.1 Modulates Rho-dependent transcription termination NP_903869.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force NP_903870.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu NP_903871.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1145 NP_903872.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0742 NP_903873.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0552 NP_903874.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2884 NP_903875.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2177 NP_903876.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters NP_903877.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3307 NP_903878.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3307 NP_903879.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2165 NP_903880.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0161 NP_903881.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_903882.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis NP_903883.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0687/TC:3.A.1.11.2 NP_903884.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3575 NP_903885.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration NP_903886.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0108 NP_903887.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine NP_903888.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0642 NP_903890.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2204 NP_903892.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0834 NP_903893.1 plays an essential role in ATP-dependent branch migration of the Holliday junction NP_903894.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_903895.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity NP_903896.1 identified by sequence similarity; ORF located using Blastx/COG1208 NP_903898.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3178 NP_903899.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1452 NP_903900.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0760 NP_903901.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) NP_903903.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1512 NP_903904.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1704 NP_903905.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0247 NP_903906.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0789 NP_903907.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_903909.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1335 NP_903910.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3325 NP_903912.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1253/TC:9.B.37.2.1 NP_903913.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0537 NP_903914.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0840 NP_903915.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2897 NP_903916.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3545 NP_903917.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0708 NP_903918.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate NP_903919.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0419 NP_903920.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903921.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1324 NP_903922.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein NP_903923.1 identified by sequence similarity; ORF located using Blastx/COG0783 NP_903924.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0810 NP_903925.1 identified by sequence similarity; ORF located using Blastx NP_903926.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0824 NP_903927.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0526 NP_903928.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0476 NP_903929.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2204 NP_903930.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0642 NP_903931.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903932.1 identified by sequence similarity; ORF located using Blastx NP_903933.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0501 NP_903934.1 identified by sequence similarity; ORF located using Blastx NP_903935.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) NP_903936.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1652 NP_903937.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0758 NP_903938.1 identified by sequence similarity; ORF located using Blastx/COG2922 NP_903939.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining; maintains net negative superhelicity NP_903940.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903944.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0818 NP_903945.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione NP_903946.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903947.1 identified by sequence similarity; ORF located using Blastx/COG0726 NP_903948.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0524 NP_903949.1 identified by sequence similarity; ORF located using Blastx/COG0526 NP_903951.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins NP_903952.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3540 NP_903953.1 identified by sequence similarity; ORF located using Blastx/COG0600/TC:3.A.1.16.3 NP_903954.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1116/TC:3.A.1.17.1 NP_903955.1 identified by sequence similarity; ORF located using Glimmer/Blastx NP_903958.1 identified by sequence similarity; ORF located using Blastx/COG0668/TC:1.A.23.2.1 NP_903959.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway NP_903960.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0583 NP_903961.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA NP_903962.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0477/TC:2.A.1.36.1 NP_903963.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3320 NP_903966.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903967.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0840 NP_903968.1 identified by sequence similarity; ORF located using Blastx/COG0174 NP_903970.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0589 NP_903971.1 identified by sequence similarity; ORF located using Blastx/COG1189 NP_903972.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1292/TC:2.A.15.1.1 NP_903973.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG3132 NP_903975.1 identified by sequence similarity; ORF located using Blastx/COG3590 NP_903976.1 identified by sequence similarity; ORF located using Blastx/COG1505 NP_903978.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_903979.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2008 NP_903980.1 identified by sequence similarity; ORF located using Blastx/COG1309 NP_903983.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1179 NP_903984.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0346 NP_903985.1 identified by sequence similarity; ORF located using Blastx/COG2134 NP_903987.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477/TC:2.A.1.2.19 NP_903988.1 identified by sequence similarity; ORF located using Blastx/COG1541 NP_903989.1 identified by sequence similarity; ORF located using Blastx/COG1541 NP_903990.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1541 NP_903991.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0454 NP_903992.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0393 NP_903993.1 identified by sequence similarity; ORF located using Blastx/COG2045 NP_903995.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1124/TC:3.A.1.5.1 NP_903996.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0444/TC:3.A.1.5.1 NP_903997.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1173/TC:3.A.1.5.1 NP_903998.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0601/TC:3.A.1.5.1 NP_903999.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0747/TC:3.A.1.5.1 NP_904000.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis NP_904001.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG0425 NP_904002.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG3332 NP_904005.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis NP_904007.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis NP_904008.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function NP_904009.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0849/TC:1.A.33.1.2 NP_904010.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1589 NP_904011.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli NP_904012.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis NP_904013.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis NP_904014.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0772/TC:9.B.3.1.1 NP_904015.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation NP_904016.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan NP_904017.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0770 NP_904018.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate NP_904019.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0768 NP_904020.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3116 NP_904021.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0275 NP_904022.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2001 NP_904024.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA NP_904025.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0154 NP_904026.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain NP_904027.1 functions in MreBCD complex in some organisms NP_904028.1 identified by sequence similarity; ORF located using Blastx/COG1792 NP_904029.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2891 NP_904030.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0768 NP_904031.1 identified by sequence similarity; ORF located using Blastx/COG0772/TC:9.B.3.1.2 NP_904032.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0612 NP_904033.2 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function NP_904034.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2847 NP_904035.1 protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function NP_904036.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG2207 NP_904037.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1296/TC:2.A.78.1.1 NP_904038.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0477 NP_904039.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0733/TC:2.A.22.5.1 NP_904040.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1113/TC:2.A.3.1.3 NP_904041.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0508 NP_904042.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG3000 NP_904043.1 identified by sequence similarity; ORF located using Blastx/COG0625 NP_904044.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1752 NP_904045.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0454 NP_904046.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0500 NP_904047.1 identified by sequence similarity; ORF located using Blastx/COG0596 NP_904048.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0500 NP_904049.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0642 NP_904050.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0156 NP_904051.1 identified by sequence similarity; ORF located using Blastx/COG0502 NP_904052.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1040 NP_904053.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0219 NP_904054.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG0797 NP_904055.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential NP_904056.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2863 NP_904057.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1333 NP_904058.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0477/TC:9.B.14.1.2 NP_904059.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1253/TC:9.B.37.1.1 NP_904060.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG2827 NP_904061.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx NP_904062.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1732/TC:3.A.1.12.3 NP_904063.1 identified by sequence similarity; ORF located using Glimmer/Blastx/COG1174/TC:3.A.1.12.4 NP_904064.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG1125/TC:3.A.1.12.4 NP_904065.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1174/TC:3.A.1.12.3 NP_904066.1 identified by sequence similarity; ORF located using Blastx/COG0577 NP_904067.1 identified by sequence similarity; ORF located using Glimmer/GeneMark/Blastx/COG1136 NP_904068.1 identified by sequence similarity; ORF located using GeneMark/Blastx/COG0845/TC:8.A.1.1.1 NP_904070.1 identified by sequence similarity; ORF located using Blastx/COG2274 NP_904073.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE NP_904074.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria NP_904075.1 identified by sequence similarity; ORF located using Blastx/COG0759 NP_904076.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates NP_904077.1 in Escherichia coli transcription of this gene is enhanced by polyamines