-- dump date 20240420_143645 -- class Genbank::Contig -- table contig_comment -- id comment NC_011146.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001124.1.REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNAREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek LovleyREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek LovleyREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David BruceREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford;REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done byREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymerREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452;REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854;REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613;REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140;REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909;REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273;REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated toREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least twoREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) valueREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGIREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution andREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genomeREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. itREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timelyREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project andREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014 Genes (RNA) :: 76REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014 Genes (RNA) :: 76 rRNAs :: 4, 4, 4 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014 Genes (RNA) :: 76 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014 Genes (RNA) :: 76 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 58REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014 Genes (RNA) :: 76 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 6REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014 Genes (RNA) :: 76 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 6 Pseudo Genes (total) :: 30REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014 Genes (RNA) :: 76 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 6 Pseudo Genes (total) :: 30 CDSs (without protein) :: 30REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014 Genes (RNA) :: 76 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 6 Pseudo Genes (total) :: 30 CDSs (without protein) :: 30 Pseudo Genes (ambiguous residues) :: 0 of 30REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014 Genes (RNA) :: 76 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 6 Pseudo Genes (total) :: 30 CDSs (without protein) :: 30 Pseudo Genes (ambiguous residues) :: 0 of 30 Pseudo Genes (frameshifted) :: 11 of 30REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014 Genes (RNA) :: 76 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 6 Pseudo Genes (total) :: 30 CDSs (without protein) :: 30 Pseudo Genes (ambiguous residues) :: 0 of 30 Pseudo Genes (frameshifted) :: 11 of 30 Pseudo Genes (incomplete) :: 21 of 30REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014 Genes (RNA) :: 76 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 6 Pseudo Genes (total) :: 30 CDSs (without protein) :: 30 Pseudo Genes (ambiguous residues) :: 0 of 30 Pseudo Genes (frameshifted) :: 11 of 30 Pseudo Genes (incomplete) :: 21 of 30 Pseudo Genes (internal stop) :: 1 of 30REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014 Genes (RNA) :: 76 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 6 Pseudo Genes (total) :: 30 CDSs (without protein) :: 30 Pseudo Genes (ambiguous residues) :: 0 of 30 Pseudo Genes (frameshifted) :: 11 of 30 Pseudo Genes (incomplete) :: 21 of 30 Pseudo Genes (internal stop) :: 1 of 30 Pseudo Genes (multiple problems) :: 3 of 30REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014 Genes (RNA) :: 76 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 6 Pseudo Genes (total) :: 30 CDSs (without protein) :: 30 Pseudo Genes (ambiguous residues) :: 0 of 30 Pseudo Genes (frameshifted) :: 11 of 30 Pseudo Genes (incomplete) :: 21 of 30 Pseudo Genes (internal stop) :: 1 of 30 Pseudo Genes (multiple problems) :: 3 of 30 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001124.1. URL -- http://www.jgi.doe.gov; JGI Project ID: 4002943; Source DNA and bacteria available from Derek Lovley (dlovley@microbio.umass.edu); Contacts: Derek Lovley (dlovley@microbio.umass.edu); David Bruce (microbe@cuba.jgi-psf.org); Quality assurance done by JGI-Stanford; Annotation done by JGI-ORNL and JGI-PGF; Finishing done by JGI-LANL; The exact number of bases in the following homopolymer regions is not known:; 9853-9860; 117347-117353; 309446-309452; 364592-364598; 471636-471645; 548091-548097; 555847-555854; 632073-632081; 838327-838334; 868396-868403; 1029608-1029613; 1128961-1128966; 1376004-1376012; 1479358-1479365; 1717134-1717140; 2879837-2879844; 2950043-2950050; 3313185-3313194; 3818905-3818909; 4055976-4055987; 4136297-4136306; 4175475-4175479; 4254266-4254273; 4598423-4598432; Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.; The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.; (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 11/17/2023 01:41:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,120 CDSs (total) :: 4,044 Genes (coding) :: 4,014 CDSs (with protein) :: 4,014 Genes (RNA) :: 76 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 6 Pseudo Genes (total) :: 30 CDSs (without protein) :: 30 Pseudo Genes (ambiguous residues) :: 0 of 30 Pseudo Genes (frameshifted) :: 11 of 30 Pseudo Genes (incomplete) :: 21 of 30 Pseudo Genes (internal stop) :: 1 of 30 Pseudo Genes (multiple problems) :: 3 of 30 ##Genome-Annotation-Data-END## COMPLETENESS: full length.