-- dump date 20140619_042050 -- class Genbank::CDS -- table cds_note -- id note YP_003363734.1 unknown EC_number=2.1.1.-. YP_003363774.1 Note the database hits to type III effectors YP_003363828.1 unknown EC_number=2.3.1.-. YP_003363884.1 similar to Mu protein S (tail fibre) YP_003363885.1 similar to Mu protein gp48 YP_003363893.1 similar to Mu tail tube protein M YP_003363898.1 similar to Mu protein gp35 YP_003363906.1 Note the prosite PS00092 N-6 Adenine-specific DNA methylases signature YP_003363910.1 86% ID to ROD36701 YP_003363915.1 similar to Mu protein gp16 YP_003363938.1 similar to Mu DNA-binding protein Ner YP_003363981.1 similar to dispersin Aap in EAEC and virulence factor CexE in ETEC YP_003363982.1 Similar to AatD, part of the Aat transporter in EAEC, note the different genomic location in relation to the rest of the aat cluster homologues compared to p042 YP_003363999.1 Similar to TibA, but note the different N-terminal YP_003364007.1 Note the similarity with Colicin V in Xylella but no apparent biological evidence to support this YP_003364132.1 unknown EC_number= YP_003364150.1 unknown EC_number= YP_003364209.1 identical to ROD38691 which is located adjacent to an identical transposase YP_003364248.1 Note the extended C-terminus YP_003364532.1 predicted tail tape-measure based on size and predicted transmembrane helices YP_003364577.1 essential cell division protein YP_003364709.1 unknown EC_number=2.1.-.-. YP_003364711.1 unknown EC_number=2.4.1.-. YP_003364782.1 one of 3 similar CDSs in CR, 86% ID to ROD16841, 84% ID ROD11971 YP_003364788.1 one of 3 similar CDSs in CR, 84% ID to ROD16841 and ROD11911 YP_003364797.1 homologue of ECs1560 found on Sp6 YP_003364798.1 homologue of ECs1568 found on Sp6 YP_003364814.1 Note the database hits to enterotoxins YP_003364821.1 T2SS substrate YP_003364923.1 Note the different N-terminus YP_003364950.1 note the different N-terminus YP_003365143.1 Note the in-frame selenocysteine stop codon YP_003365246.1 unknown EC_number=1.11.1.-. YP_003365252.1 one of 3 similar CDSs in CR, 86% ID to ROD11911, 84% ID ROD11971 YP_003365309.1 unknown EC_number=4.2.1.20. YP_003365310.1 unknown EC_number=4.2.1.20. YP_003365391.1 unknown EC_number=5.1.1.1. YP_003365488.1 unknown EC_number=3.1.1.61. YP_003365535.1 high similarity to Mu protein com therefore probably regulates the downstream DNA modification gene YP_003365615.1 note the different N-terminal YP_003365628.1 Note the high similarity of C-terminus end to several proposed adhesins YP_003365666.1 has a 5aa deletion (aa 28-32) compared to Salmonella cbiT YP_003365694.1 Note the different N-terminus YP_003365904.1 Identical to ROD40731 which is also found adjacent to an ISCro1 element at 4313468..4313875 YP_003366010.1 cysteine desulfurase YP_003366085.1 fructoselysine transporter YP_003366105.1 probably secreted by adjacent type I secretion system YP_003366107.1 note aa 177 to 315 are missing compared to Salmonella orthologues YP_003366139.1 similar to P1 PmgQ with morphogenetic function YP_003366140.1 similar to P1 PmgP with morphogenetic function YP_003366141.1 similar to P1 PmgO with morphogenetic function YP_003366177.1 58.2% ID to ROD31811, 57.9% ID to ROD47771 YP_003366295.1 SciD homologue, component of T6SS YP_003366296.1 SciE homologue, component of T6SS YP_003366297.1 FHA component of T6SS. Some similarity to FHA proteins YP_003366298.1 VgrG component of T6SS. Similar to Rhs family proteins YP_003366299.1 SciT homologue, component of T6SS YP_003366300.1 DotU component of T6SS YP_003366301.1 SciO component of T6SS YP_003366302.1 Similar to SciN, lipoprotein component of T6SS. YP_003366303.1 Hcp component of T6SS. Similar to SciK/M YP_003366304.1 SciI homologue, Duf877 component of T6SS YP_003366305.1 SciH homologue, Duf770 component of T6SS YP_003366310.1 SciG homologue, ClpV ATPase component of T6SS YP_003366311.1 similar to SciC; SciC homologue, Duf879 component of T6SS YP_003366312.1 SciB homologue, Duf1305 component of T6SS YP_003366313.1 SciA homologue, ImpA component of T6SS YP_003366317.1 Duf1795 component of T6SS YP_003366382.1 unknown EC_number= YP_003366450.1 similar to a family of outer membrane proteins involved in virulence, including Ail, Rck and PagC YP_003366473.1 high similarity to protein tyrosine/serine phosphatases, but none with experimental evidence YP_003366476.1 probably secreted by adjacent type I secretion system YP_003366500.1 Contains additional 36 aa at N-terminal from Crod LEE published sequence, in accordance with E. coli homologues. YP_003366511.1 positive regulator of LEE gene expression YP_003366512.1 negative regulator of LEE gene expression YP_003366522.1 positive regulator YP_003366662.1 similar to 4-hydroxybenzoate transporters YP_003366666.1 similar to Dimethylmenaquinone transferase but no experimental evidence YP_003366671.1 Note the conserved C-terminus, but lack of similarity of the N-terminus YP_003366672.1 similar to CR LEE-encoded effector Map (ROD29871) and Nle effectors ROD40911 and ROD40981 YP_003366773.1 Note the different N-terminus YP_003366815.1 specificity domain of type I restriction modification system. YP_003366818.1 DNA methylase domain of type I restriction modification system. Note the Pfam hit to PF02384, N-6 DNA Methylase YP_003366826.1 Note the different N-terminal YP_003366849.1 Similar to conserved hypothetical proteins, but altered N- and C-termini YP_003366854.1 Note that there is a TGA selenocysteine stop codon following codon 195 which can be read through YP_003366861.1 Note the different C-terminus YP_003366874.1 ImpA component of T6SS YP_003366875.1 DotU component of T6SS YP_003366876.1 Duf876 component of T6SS YP_003366877.1 Lipoprotein component of T6SS YP_003366878.1 Duf770 component of T6SS YP_003366879.1 Duf877 component of T6SS YP_003366880.1 Hcp component of the T6SS YP_003366881.1 Duf1316 component of T6SS YP_003366882.1 Duf879 component of T6SS YP_003366883.1 Duf1305 component of the T6SS YP_003366884.1 ClpV component of T6SS YP_003366885.1 VgrG component of T6SS. Similar to Rhs family proteins YP_003366928.1 Note the in-frame selenocysteine stop codon following codon 139 YP_003367087.1 Note the different N-terminus YP_003367102.1 alternate tail fibre assembly YP_003367142.1 missing the first 19 aa conserved in other enterics YP_003367160.1 protein psie YP_003367247.1 Hcp homologue YP_003367302.1 Note the in-frame selenocysteine stop codon following codon 195 YP_003367307.1 identical to ROD05791 which is located adjacent to an identical transposase YP_003367308.1 ROD05781 is identical to this transposase, except for an internal deletion and IS insertion, and is also found adjacent to NleD YP_003367401.1 Note the different N-terminus YP_003367498.1 recname: full=ilvbn operon leader peptide; altname: full=ilvbn operon attenuator peptide YP_003367508.1 Identical to ROD23601 which is also found adjacent to an ISCro1 element at complement(2482456..2482866) YP_003367514.1 similar to OspE1 and OspE2 from Shigella and EspO1-1 and EspO1-2 from Sakai YP_003367517.1 Note similarity to CR LEE-encoded effector Map (ROD29871) and Nle effectors ROD40981 and ROD31791 YP_003367523.1 Note similarity to CR LEE-encoded effector Map (ROD29871) and Nle effectors ROD40911 and ROD31791. IpgB-family effector YP_003367524.1 similar to SamA which is thought to be involved in resistance to mutation by UV and chemical mutagens in S. typhimurium, but note divergent C-terminus YP_003367563.1 Note the extended C-terminus YP_003367574.1 Note the extended C-terminus YP_003367628.1 Note the different N-terminus YP_003367757.1 Hcp homologue with C terminal extension YP_003367781.1 Similar to phage P1 prevent host death protein YP_003367782.1 Similar to phage P1 death on curing protein YP_003367791.1 Hcp homologue with C terminal extension YP_003367812.1 Hcp homologue YP_003367888.1 similar to E. coli K12 ChiA, but note the different N- and C-termini YP_003368058.1 Note the different C-terminal to the previously published version of cfcG. However this version matches better with LngG and cofG YP_003368123.1 Note translational start site for scaffold protein Z is integral to gene I YP_003368124.1 Note translational start site for scaffold protein Z is integral to gene I YP_003368339.1 similar to E. coli autotransporter adhesin involved in diffuse adherance (AIDA-I), and TibA YP_003368363.1 similar to PagC YP_003368394.1 unknown EC_number=3.1.-.-. YP_003368449.1 Note the database matches to transfer inhibition proteins. Note the Pfam domain PF02517 Abortive infection protein AbiG and weak signal peptide YP_003368451.1 the upstream PemI encodes the inhibitor which might control the killing function of PemK in plasmid R100 YP_003368456.1 Similar to TibC of ETEC. Putative glycosyltransferase of downstream TibA-like adhesin. YP_003368457.1 C-terminal region highly similar to the autotransporter adhesin TibA of ETEC YP_003368469.1 putative autotransporter, member of the serine protease autotransporter of the enterobacteriaceae (SPATE) family YP_003368482.1 putative autotransporter, member of the serine protease autotransporter of the enterobacteriaceae (SPATE) family YP_003368528.1 67% ID to ROD49801 and 60% ID to ROD05151 in CR chromosome YP_003368529.1 30-76% ID to ROD12951 in CR chromosome YP_003368536.1 some similarity at C-terminus to STEC autoagglutinating adhesin YP_003368541.1 Note the different N-terminal compared to Y.ent cryptic plasmid TriI YP_003368545.1 Note the different C-terminal from Y.ent cryptic plasmid TriE YP_003368549.1 Note the differnt C-terminal from Y.ent cryptic plasmid TriA