-- dump date   	20140619_042716
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_001307147.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_001307148.1	binds the polymerase to DNA and acts as a sliding clamp
YP_001307149.1	TIGRFAM: S4 region, YaaA; PFAM: RNA-binding S4 domain protein; KEGG: cpr:CPR_0003 S4 domain protein
YP_001307150.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_001307151.1	KEGG: cpr:CPR_0005 hypothetical protein
YP_001307152.1	negatively supercoils closed circular double-stranded DNA
YP_001307153.1	negatively supercoils closed circular double-stranded DNA
YP_001307154.1	KEGG: cno:NT01CX_0854 hypothetical protein
YP_001307155.1	PFAM: 3H domain protein; Helix-turn-helix, type 11 domain protein; KEGG: cac:CAC0009 uncharacterized conserved protein, ortholog of YrxA B.subtilis
YP_001307156.1	PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cpr:CPR_0012 BFD-like 2Fe-2S binding domain protein
YP_001307157.1	PFAM: protein of unknown function DUF1667; KEGG: cpr:CPR_0013 hypothetical protein
YP_001307158.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY1661 hypothetical protein
YP_001307159.1	TIGRFAM: ATP-dependent nuclease subunit AddB; KEGG: cpe:CPE0020 ATP-dependent deoxyribonuclease chain B
YP_001307160.1	TIGRFAM: Recombination helicase AddA; PFAM: UvrD/REP helicase; KEGG: cpf:CPF_0025 ATP-dependent nuclease, subunit A
YP_001307161.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: cpf:CPF_0028 ErfK/YbiS/YcfS/YnhG family protein
YP_001307163.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cno:NT01CX_0224 sensory transduction histidine kinase
YP_001307164.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_001307165.1	PFAM: regulatory protein, TetR; KEGG: ctc:CTC00079 transcriptional regulator, TetR family
YP_001307166.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: cpf:CPF_1058  Cof-like hydrolase
YP_001307167.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpf:CPF_1757 ABC transporter ATP-binding protein
YP_001307168.1	PFAM: Domain of unknown function DUF1836; KEGG: cpf:CPF_1724 hypothetical protein
YP_001307169.1	TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: bca:BCE_5590 channel protein, hemolysin III family
YP_001307170.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_001307171.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_001307172.1	TIGRFAM: methylglyoxal synthase; PFAM: MGS domain protein; KEGG: oih:OB1767 methylglyoxal synthase
YP_001307173.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cno:NT01CX_0219 probable short-chain dehydrogenase
YP_001307174.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_001307175.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_001307177.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cac:CAC0277 HD-GYP hydrolase domain containing protein
YP_001307178.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_001307179.1	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: cno:NT01CX_0653 peptidyl-prolyl cis-trans isomerase
YP_001307180.1	KEGG: cpe:CPE2565 hypothetical protein
YP_001307181.1	PFAM: helix-turn-helix domain protein; KEGG: cpe:CPE2564 hypothetical protein
YP_001307182.1	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Peptidoglycan-binding domain 1 protein; KEGG: cac:CAC3245 subtilisin like protease (two fused domains)
YP_001307183.1	PFAM: Radical SAM domain protein; KEGG: cpf:CPF_1251 radical SAM domain protein
YP_001307184.1	KEGG: cpf:CPF_2884 hypothetical protein
YP_001307185.1	TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cno:NT01CX_1004 radical SAM protein, TIGR01212 family
YP_001307186.1	catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate
YP_001307187.1	PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cac:CAC0669 hypothetical protein
YP_001307188.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_1139 DNA-binding response regulator
YP_001307189.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cpf:CPF_1140 sensor histidine kinase
YP_001307190.1	KEGG: dsy:DSY2272 hypothetical protein
YP_001307191.1	KEGG: dsy:DSY2271 hypothetical protein
YP_001307192.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin)
YP_001307193.1	PFAM: LacI family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; KEGG: cpr:CPR_2548 catabolite control protein A
YP_001307194.1	PFAM: regulatory protein, MarR; transcriptional regulator TrmB; KEGG: dsy:DSY1453 hypothetical protein
YP_001307195.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cno:NT01CX_1214 MATE efflux family protein
YP_001307196.1	KEGG: cpf:CPF_2858 hypothetical protein
YP_001307197.1	PFAM: nucleoside recognition domain protein; KEGG: ctc:CTC00238 spore maturation protein A
YP_001307198.1	PFAM: nucleoside recognition domain protein; KEGG: cpf:CPF_2856 spore maturation protein B
YP_001307199.1	PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: cpr:CPR_2539 xaa-pro aminopeptidase
YP_001307200.1	PFAM: creatinase; peptidase M24; KEGG: cpf:CPF_0866 metallopeptidase, M24 family
YP_001307201.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_001307202.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cpf:CPF_2843 hydrolase, TatD family
YP_001307203.1	PFAM: protein of unknown function DUF348; 3D domain protein; G5 domain protein; KEGG: cpf:CPF_2842 3D/G5 domain protein
YP_001307204.1	TIGRFAM: primase/topoisomerase like protein; PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein; KEGG: cpr:CPR_2527 primase-like protein
YP_001307205.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_001307206.1	KEGG: cpe:CPE2516 hypothetical protein
YP_001307207.1	KEGG: cpe:CPE2515 hypothetical protein
YP_001307208.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_001307209.1	KEGG: cpe:CPE2513 hypothetical protein
YP_001307210.1	KEGG: cpf:CPF_2835 Mrp/NBP35 ATP-binding family protein
YP_001307211.1	KEGG: cpr:CPR_2520 ferredoxin
YP_001307212.1	TIGRFAM:  proton-coupled thiamine transporter YuaJ; KEGG: cpf:CPF_1622 probable proton-coupled thiamine transporter YuaJ
YP_001307213.1	TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cac:CAC0948 uncharacterized protein, DegV family
YP_001307214.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_001307215.1	in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis
YP_001307216.1	Catalyzes the conversion of citrate to isocitrate
YP_001307217.1	TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: cpf:CPF_2826 anaerobic ribonucleoside-triphosphate reductase activating protein
YP_001307218.1	responsible for recognizing base lesions in the genome and initiating base excision DNA repair
YP_001307219.1	PFAM: glycosyl transferase, family 2; KEGG: gka:GK3091 glycosyltransferase
YP_001307220.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cac:CAC0277 HD-GYP hydrolase domain containing protein
YP_001307221.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_001307222.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001307223.1	PFAM: metallophosphoesterase; KEGG: cpe:CPE2498 hypothetical protein
YP_001307224.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_001307225.1	TIGRFAM: pur operon repressor; PFAM: phosphoribosyltransferase; purine repressor-like; KEGG: cpr:CPR_2501 pur operon repressor
YP_001307226.1	PFAM: SpoVG family protein; KEGG: cac:CAC3223 stage V sporulation protein G
YP_001307227.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_001307228.1	TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; KEGG: cpf:CPF_2812 ribose-phosphate pyrophosphokinase
YP_001307229.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC00189 transcriptional regulatory protein
YP_001307230.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cno:NT01CX_1017 sensory transduction histidine kinase
YP_001307231.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_001307232.1	TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cpr:CPR_2493 transcription-repair coupling factor
YP_001307233.1	cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein
YP_001307234.1	TIGRFAM: transcriptional regulator, AbrB family; Sporulation stage V, protein T; PFAM: SpoVT/AbrB domain protein; KEGG: cpe:CPE2482 stage V sprulation protein T
YP_001307235.1	PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: ctc:CTC00197 stage V sporulation protein B
YP_001307236.1	TIGRFAM: MazG family protein; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; MazG nucleotide pyrophosphohydrolase; KEGG: cpr:CPR_2489 MazG family protein
YP_001307237.1	PFAM: histone family protein DNA-binding protein; KEGG: cac:CAC3211 DNA binding protein HU
YP_001307238.1	PFAM: RNA-binding S4 domain protein; KEGG: cpf:CPF_2801 S4 domain protein
YP_001307239.1	PFAM: YabP family protein; KEGG: cno:NT01CX_1027 hypothetical protein
YP_001307240.1	TIGRFAM: Spore cortex biosynthesis protein YabQ; KEGG: cpf:CPF_2799 spore cortex biosynthesis protein YabQ
YP_001307241.1	PFAM: Septum formation initiator; KEGG: cpf:CPF_2798  cell division protein FtsL
YP_001307242.1	PFAM: RNA binding S1 domain protein; KEGG: cpr:CPR_2483 RNA-binding protein
YP_001307243.1	KEGG: cpf:CPF_2789 stage II sporulation protein E; TIGRFAM: Sporulation stage II, protein E; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein
YP_001307244.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: cno:NT01CX_1038 cell cycle protein MesJ
YP_001307245.1	TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: cpe:CPE2471 hypoxanthine-guanine phosphoribosyltransferase
YP_001307246.1	KEGG: ctc:CTC00205 cell division protein ftsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA
YP_001307247.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_001307248.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_001307249.1	TIGRFAM:  TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase; KEGG: cpr:CPR_2469  dihydrouridine synthase
YP_001307250.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_001307251.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_001307252.1	Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001307253.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_001307254.1	KEGG: cac:CAC3039 hypothetical secreted protein
YP_001307255.1	TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: lbr:LVIS_0186 D-xylose proton-symporter
YP_001307256.1	PFAM: Mg2+ transporter protein, CorA family protein; KEGG: cpr:CPR_2452 magnesium and cobalt transporter
YP_001307257.1	KEGG: cpf:CPF_2765 amidohydrolase-like protein
YP_001307259.1	PFAM: thymidylate kinase; KEGG: cno:NT01CX_0761 thymidylate kinase
YP_001307260.1	PFAM: protein of unknown function DUF970; KEGG: cac:CAC0299 protein from nitrogen regulatory protein P-II (GlnB) family, ortholog YAAQ B.subtilis
YP_001307261.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_001307262.1	PFAM: PSP1 domain protein; KEGG: cpr:CPR_2443 PSP1 domain protein
YP_001307263.1	KEGG: cac:CAC0302 predicted metal-binding protein of ferredoxin fold
YP_001307264.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cpr:CPR_2442 ferredoxin (FdxA)
YP_001307265.1	KEGG: cac:CAC0482 Zn-dependent hydrolase of the metallo-beta-lactamase superfamily
YP_001307266.1	PFAM: Firmicute transcriptional repressor of class III stress genes; KEGG: cpf:CPF_2754 transcriptional repressor
YP_001307267.1	PFAM: UvrB/UvrC protein; KEGG: cac:CAC3191 uncharacterized conserved protein, containing ClpE-like Zn-zinger domain; YACH B.subtilis ortholog
YP_001307268.1	PFAM: ATP:guanido phosphotransferase; KEGG: cac:CAC3190 arginine kinase related enzyme, YACI B.subtilis ortholog
YP_001307269.1	PFAM: UvrB/UvrC protein; ATPase AAA, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: ATPase AAA; KEGG: ctc:CTC02633 negative regulator of genetic competence mecB/clpC
YP_001307270.1	TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; KEGG: cpr:CPR_2436 thioredoxin-disulfide reductase
YP_001307271.1	TIGRFAM: glutaredoxin-like protein, YruB-family; PFAM: glutaredoxin; KEGG: cpr:CPR_2433 glutaredoxin
YP_001307272.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_001307273.1	non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair
YP_001307274.1	PFAM: PilT protein domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein, PINc; KEGG: cpr:CPR_2427 PIN/TRAM domain protein
YP_001307275.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_001307276.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_001307277.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_001307278.1	PFAM: ribonuclease III; KEGG: cpe:CPE2426 hypothetical protein
YP_001307279.1	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: cpr:CPR_2420 RNA methyltransferase, TrmH family, group 3
YP_001307280.1	PFAM: protein of unknown function DUF901; KEGG: cpr:CPR_2419 hypothetical protein
YP_001307281.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001307282.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001307283.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif
YP_001307284.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_001307285.1	Modulates Rho-dependent transcription termination
YP_001307286.1	binds directly to 23S ribosomal RNA
YP_001307287.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_001307288.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_001307289.1	TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12-like; KEGG: cpr:CPR_2409 ribosomal protein L7/L12
YP_001307290.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_001307291.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_001307292.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_001307293.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_001307294.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001307295.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001307296.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_001307297.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_001307298.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_001307299.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_001307300.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_001307301.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_001307302.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_001307303.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_001307304.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_001307305.1	one of the stabilizing components for the large ribosomal subunit
YP_001307306.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_001307307.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_001307308.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_001307309.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_001307310.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_001307311.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_001307312.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_001307313.1	binds 5S rRNA along with protein L5 and L25
YP_001307314.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_001307315.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_001307316.1	late assembly protein
YP_001307317.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_001307318.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_001307319.1	TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: cpr:CPR_2377 methionine aminopeptidase, type I
YP_001307320.1	KEGG: cpf:CPF_2691 hypothetical protein
YP_001307321.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_001307322.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_001307323.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_001307324.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_001307325.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001307326.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_001307327.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_001307328.1	with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene
YP_001307329.1	with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene
YP_001307330.1	PFAM: cobalt transport protein; KEGG: cpf:CPF_2681 cobalt ABC transporter permease
YP_001307331.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_001307332.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_001307333.1	forms a direct contact with the tRNA during translation
YP_001307334.1	TIGRFAM: N-acetylmuramoyl-L-alanine amidase CwlD; PFAM: cell wall hydrolase/autolysin; KEGG: cpr:CPR_2361 N-acetylmuramoyl-L-alanine amidase
YP_001307335.1	Catalyzes the reversible hydration of fumaric acid to yield I-malic acid
YP_001307336.1	Catalyzes the reversible hydration of fumaric acid to yield l-malic acid
YP_001307337.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cno:NT01CX_0444 TPR domain protein
YP_001307338.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_2674 DNA-binding response regulator
YP_001307339.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cpr:CPR_2358 sensor histidine kinase
YP_001307340.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_001307341.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_001307342.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein, mobile region; PEP-utilising protein domain protein; KEGG: cpe:CPE2357 phosphoenolpyruvate-protein phosphotransferase
YP_001307343.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cno:NT01CX_1157 TPR-repeat-containing protein
YP_001307344.1	TIGRFAM: isoaspartyl dipeptidase; PFAM: amidohydrolase; KEGG: cpf:CPF_2665 isoaspartyl dipeptidase
YP_001307345.1	PFAM: cell wall hydrolase, SleB; KEGG: cpr:CPR_2348 spore-cortex-lytic enzyme
YP_001307346.1	PFAM: protein of unknown function DUF147; KEGG: cpr:CPR_2346 conserved hypothetical protein TIGR00159
YP_001307347.1	PFAM: YbbR family protein; KEGG: cpr:CPR_2345 hypothetical protein
YP_001307348.1	PFAM: HI0933 family protein; KEGG: cpf:CPF_2658 hypothetical protein
YP_001307349.1	catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate
YP_001307350.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_001307351.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cpr:CPR_1097 HDIG/HD domain protein
YP_001307352.1	TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; KEGG: cpe:CPE1021 dihydropteroate synthase
YP_001307353.1	TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; dihydroneopterin aldolase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: cpf:CPF_1277 dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YP_001307354.1	PFAM: protein of unknown function DUF124; KEGG: cpf:CPF_2644 hypothetical protein
YP_001307355.1	TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor; KEGG: cpr:CPR_2329 TrpR-like protein YerC/YecD
YP_001307356.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_001307357.1	KEGG: cpr:CPR_2064 hypothetical protein
YP_001307358.1	TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: mbu:Mbur_0709 acetolactate synthase, small subunit
YP_001307359.1	TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cth:Cthe_2519 2-isopropylmalate synthase/homocitrate synthase family protein
YP_001307360.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis
YP_001307361.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis
YP_001307362.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_001307363.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein, central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cth:Cthe_2714 acetolactate synthase, large subunit, biosynthetic type
YP_001307364.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_001307365.1	PFAM: sigma-54 factor, interaction domain-containing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PTS system fructose subfamily IIA component; PRD domain protein; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: tte:TTE0180 NtrC family transcriptional regulator, ATPase domain
YP_001307366.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: tte:TTE0181 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
YP_001307367.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: lwe:lwe2615 PTS system, galactitol-specific, IIB component
YP_001307368.1	TIGRFAM: PTS system, galactitol-specific IIC subunit; PFAM: PTS system Galactitol-specific IIC component; KEGG: lwe:lwe2614 PTS system, galactitol-specific, IIC component
YP_001307369.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: lmo:lmo2663 polyol dehydrogenase
YP_001307370.1	PFAM: Transketolase domain protein; KEGG: cpf:CPF_0292  transketolase, N-terminal subunit
YP_001307371.1	PFAM: Transketolase, central region; Transketolase domain protein; KEGG: cpr:CPR_0288 transketolase
YP_001307372.1	PFAM: ribulose-phosphate 3-epimerase; KEGG: tte:TTE1498 Pentose-5-phosphate-3-epimerase
YP_001307373.1	TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: lin:lin2811 similar to ribose 5-phosphate epimerase
YP_001307374.1	PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: lwe:lwe1891 phosphoglucomutase/phosphomannomutase family protein
YP_001307375.1	PFAM: Excinuclease ABC, C subunit domain protein; KEGG: cpe:CPE1444  endonuclease
YP_001307376.1	PFAM: extracellular solute-binding protein, family 1; KEGG: cno:NT01CX_0965 hypothetical ABC transporter extracellular binding protein
YP_001307377.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB2569 multiple sugar-binding transport system permease
YP_001307378.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cno:NT01CX_0967 sugar ABC transporter permease
YP_001307379.1	amylomaltase; acts to release glucose from maltodextrins
YP_001307380.1	PFAM: LacI family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; KEGG: cpe:CPE0417 probable transcriptional regulator
YP_001307381.1	KEGG: ctc:CTC00542 encapsulation protein CapA
YP_001307382.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3620 hypothetical protein
YP_001307383.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY3619 hypothetical protein
YP_001307384.1	PFAM: protein of unknown function DUF214; KEGG: dsy:DSY3618 hypothetical protein
YP_001307385.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cac:CAC0390 cystathionine gamma-synthase
YP_001307386.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cac:CAC0391 cystathionine beta-lyase
YP_001307387.1	PFAM: regulatory protein, MarR; KEGG: cpr:CPR_0493 transcriptional regulator, MarR family
YP_001307388.1	TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: cac:CAC0154 PTS system, mannitol-specific IIBC component (gene MtlA)
YP_001307389.1	PFAM: PRD domain protein; KEGG: cac:CAC0155  regulator of the PTS system for mannitol (gene MltR)
YP_001307390.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: cac:CAC0156 PTS system, mannitol-specific IIA domain (Ntr-type) (gene MltF)
YP_001307391.1	PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: spt:SPA3538 mannitol-1-phosphate dehydrogenase
YP_001307392.1	TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: cpe:CPE2327 glutamine-fructose-6-phosphate transaminase
YP_001307393.1	TIGRFAM: serine O-acetyltransferase; KEGG: mta:Moth_2485 serine O-acetyltransferase
YP_001307394.1	PFAM: Thioesterase; KEGG: bcz:BCZK1713 thioesterase
YP_001307395.1	KEGG: bat:BAS2541 hypothetical protein
YP_001307396.1	TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Non-ribosomal peptide synthetase; KEGG: bat:BAS2540 AMP-binding enzyme
YP_001307397.1	PFAM: condensation domain protein; phosphopantetheine-binding; Beta-ketoacyl synthase-like; KEGG: smu:SMU.1343c  polyketide synthase
YP_001307398.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; phosphopantetheine-binding; Male sterility C-terminal domain; KEGG: smu:SMU.1339  bacitracin synthetase
YP_001307399.1	PFAM: peptidase U32; KEGG: mja:MJ1657 hypothetical protein
YP_001307400.1	PFAM: AMP-dependent synthetase and ligase; KEGG: vch:VC0249 RfbL protein
YP_001307401.1	PFAM: BAAT/Acyl-CoA thioester hydrolase-like; KEGG: cac:CAC3407 acyl-CoA thioesterase 1
YP_001307402.1	PFAM: 4'-phosphopantetheinyl transferase; KEGG: cth:Cthe_0737 phosphopantethiene-protein transferase
YP_001307403.1	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cac:CAC3575 malonyl CoA-acyl carrier protein transacylase
YP_001307404.1	PFAM: regulatory protein, TetR; KEGG: smu:SMU.134  transcriptional regulator (TetR/AcrR family)
YP_001307405.1	TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: chy:CHY_0588 drug resistance transporter EmrB/QacA family protein
YP_001307406.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3620 hypothetical protein
YP_001307407.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY3669 hypothetical protein
YP_001307408.1	PFAM: protein of unknown function DUF214; KEGG: cac:CAC1534 predicted permease
YP_001307412.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: fnu:FN0219 autolysin response regulator
YP_001307413.1	KEGG: dsy:DSY2529 hypothetical protein
YP_001307414.1	PFAM: Accessory gene regulator B; KEGG: cth:Cthe_2358 accessory gene regulator B
YP_001307415.1	PFAM: regulatory protein, TetR; KEGG: bce:BC4570 transcriptional regulator, TetR family
YP_001307416.1	KEGG: cac:CAC3402 dipeptidyl aminopeptidase/acylaminoacyl-peptidase related protein
YP_001307417.1	PFAM: NADPH-dependent FMN reductase; KEGG: cac:CAC3495 multimeric flavodoxin WrbA family protein
YP_001307418.1	PFAM: major facilitator superfamily MFS_1; KEGG: cac:CAC0161 ABC transporter (permease)
YP_001307419.1	PFAM: regulatory protein, MarR; iron dependent repressor; KEGG: dsy:DSY3767 hypothetical protein
YP_001307420.1	PFAM: regulatory protein, MarR; KEGG: cac:CAC0162 transcriptional regulator MarR/EmrR family
YP_001307421.1	PFAM: cyclase family protein; KEGG: ctc:CTC01896  polyketide cyclase
YP_001307422.1	PFAM: regulatory protein, MarR; KEGG: bat:BAS0708 transcriptional regulator, MarR family
YP_001307423.1	PFAM: chemotaxis sensory transducer; KEGG: bca:BCE_5181 methyl-accepting chemotaxis protein
YP_001307425.1	KEGG: cpr:CPR_0050 hypothetical protein
YP_001307426.1	KEGG: cpr:CPR_0051 hypothetical protein
YP_001307427.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cth:Cthe_2290 ABC transporter protein
YP_001307429.1	TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; KEGG: spd:SPD_1932 maltodextrin phosphorylase
YP_001307430.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: btl:BALH_2808 transcriptional regulator, AraC family
YP_001307431.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: cac:CAC2547 possible membrane-associated methyl-accepting chemotaxis protein fused to HAMP domain
YP_001307432.1	PFAM: Rubrerythrin; KEGG: cpf:CPF_0133 rubrerythrin
YP_001307433.1	KEGG: cpr:CPR_1932 hypothetical protein
YP_001307434.1	PFAM: protein of unknown function DUF886; KEGG: ctc:CTC00834 hypothetical protein
YP_001307435.1	PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cpr:CPR_2319 5-formyltetrahydrofolate cyclo-ligase family protein
YP_001307436.1	KEGG: cpf:CPF_0202 hypothetical protein
YP_001307437.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_001307438.1	PFAM: chemotaxis sensory transducer; KEGG: ctc:CTC00924 methyl-accepting chemotaxis protein
YP_001307439.1	KEGG: cpr:CPR_2310 hypothetical protein
YP_001307440.1	KEGG: cpr:CPR_2309 hypothetical protein
YP_001307441.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_001307442.1	KEGG: cpe:CPE2314 hypothetical protein
YP_001307443.1	PFAM: polysaccharide deacetylase; KEGG: ctc:CTC00229  polysaccharide deacetylase
YP_001307444.1	KEGG: swo:Swol_1623 hypothetical protein
YP_001307445.1	catalyzes the formation of biotin from dethiobiotin and sulfur
YP_001307446.1	PFAM: regulatory protein, MarR; KEGG: mma:MM0116 transcriptional regulator, MarR family
YP_001307447.1	KEGG: bat:BAS3106 hypothetical protein
YP_001307448.1	PFAM: small multidrug resistance protein; KEGG: cac:CAC3666 membrane transporters of cations and cationic drugs
YP_001307449.1	PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: cpe:CPE2531 alcohol dehydrogenase / acetaldehyde dehydrogenase
YP_001307450.1	TIGRFAM: ATPase P; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: cpe:CPE0333 probable cation-transporting ATPase
YP_001307451.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC0443 methyl-accepting chemotaxis protein
YP_001307452.1	PFAM: Patatin; KEGG: cpf:CPF_1546 phospholipase, patatin family
YP_001307453.1	PFAM: GntR family transcriptional regulator; GntR domain protein; KEGG: cpr:CPR_0301 hypothetical protein
YP_001307454.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; KEGG: cpe:CPE0311 electron transfer flavoprotein beta-subunit
YP_001307455.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: ctc:CTC00974 electron transfer flavoprotein alpha-subunit
YP_001307456.1	PFAM: FAD linked oxidase domain protein; KEGG: cac:CAC2542 FAD/FMN-containing dehydrogenase
YP_001307457.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sth:STH169 RNA polymerase ECF-type sigma factor
YP_001307459.1	TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: sdy:SDY_3786 formate acetyltransferase 2
YP_001307460.1	TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: tko:TK0290 pyruvate-formate lyase-activating enzyme
YP_001307461.1	PFAM: Transaldolase; KEGG: vpa:VPA1569  transaldolase
YP_001307462.1	PFAM: Nucleotidyl transferase; KEGG: cpr:CPR_2294 mannose-1-phosphate guanylyltransferase
YP_001307463.1	KEGG: cpr:CPR_2292 hypothetical protein
YP_001307464.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_001307465.1	catalyzes the formation of crotonoyl-CoA from (3R)-3-hydroxybutanoyl-CoA
YP_001307466.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: cpr:CPR_2286 butyryl-CoA dehydrogenase
YP_001307467.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; KEGG: cpe:CPE2299 electron transfer flavoprotein beta subunit
YP_001307468.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: cpr:CPR_2284 3-hydroxybutyryl-CoA dehydrogenase
YP_001307469.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_001307470.1	PFAM: 8-oxoguanine DNA glycosylase domain protein; SMART: HhH-GPD family protein; KEGG: cpr:CPR_2279 8-oxoguanine DNA glycosylase
YP_001307471.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hydrogenase large subunit domain protein; KEGG: cno:NT01CX_0464 Fe-hydrogenase large subunit family protein
YP_001307472.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_001307473.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_001307474.1	KEGG: cno:NT01CX_1958 hypothetical protein
YP_001307475.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_001307476.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_001307478.1	PFAM: regulatory protein, DeoR; M trans-acting positive regulator; PRD domain protein; Helix-turn-helix, type 11 domain protein; KEGG: pac:PPA1482  regulator of sorbitol operon
YP_001307479.1	PFAM: Glucitol operon activator; KEGG: bld:BLi03867 hypothetical protein
YP_001307480.1	TIGRFAM: PTS system, glucitol/sorbitol-specific, IIC subunit; PFAM: PTS system protein II sorbitol-specific factor; KEGG: lsl:LSL_1891 PTS system, glucitol/sorbitol-specific IIC2 component
YP_001307481.1	TIGRFAM: PTS system, glucitol/sorbitol-specific, IIBC subunit; PFAM: Sorbitol phosphotransferase protein II domain protein; KEGG: pac:PPA1485 PTS system, glucitol/sorbitol-specific IIBC component
YP_001307482.1	PFAM: Transaldolase; KEGG: lsl:LSL_1888 transaldolase
YP_001307483.1	TIGRFAM: PTS system, glucitol/sorbitol-specific IIA subunit; PFAM: PTS system glucitol/sorbitol-specific IIA component; KEGG: efa:EF3305 PTS system, sorbitol-specific IIA component
YP_001307484.1	Converts D-sorbitol-dphosphate to D-fructose-6-phosphate
YP_001307485.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_001307486.1	PFAM: protein of unknown function DUF188; KEGG: cno:NT01CX_0440 emg2 protein
YP_001307487.1	PFAM: Two component regulator three Y domain protein; KEGG: cpr:CPR_2250 two component regulator three Y motif protein
YP_001307488.1	PFAM: Lytic transglycosylase, catalytic; KEGG: cac:CAC2677 lytic murein transglycosylase
YP_001307489.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cno:NT01CX_0437 RNA pseudouridylate synthase family protein
YP_001307490.1	PFAM: nitroreductase; KEGG: bce:BC3321 NAD(P)H-dependent flavin reductase
YP_001307491.1	PFAM: helix-turn-helix, HxlR type; KEGG: bsu:BG12143 similar to hypothetical proteins
YP_001307492.1	PFAM: regulatory protein, MarR; KEGG: lbl:LBL_2581 transcriptional regulator (MarR family)
YP_001307493.1	PFAM: nitrogen-fixing NifU domain protein; KEGG: pca:Pcar_2331 thioredoxin-like proteins and domains-like
YP_001307494.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cth:Cthe_3036 methyl-accepting chemotaxis sensory transducer
YP_001307495.1	PFAM: UvrD/REP helicase; KEGG: cpf:CPF_2542 ATP-dependent DNA helicase PcrA
YP_001307496.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_001307497.1	PFAM: extracellular solute-binding protein, family 5; KEGG: cno:NT01CX_0428 probable peptide ABC-type transporter periplasmic binding component
YP_001307498.1	KEGG: cpf:CPF_2537 hypothetical protein
YP_001307499.1	PFAM: AIR synthase related protein domain protein; KEGG: cno:NT01CX_0426 hydrogenase maturation factor
YP_001307500.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_001307501.1	TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: cpe:CPE2252 conserved hypothetical protein
YP_001307502.1	KEGG: cpr:CPR_0719 hypothetical protein
YP_001307503.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cac:CAC0541 SAM-dependent methyltransferase
YP_001307504.1	KEGG: ctc:CTC00840 hypothetical protein
YP_001307505.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; KEGG: cac:CAC0903 sensory transduction histidine kinase
YP_001307509.1	KEGG: btl:BALH_2622 glutathionylspermidine synthase
YP_001307511.1	PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: mfl:Mfl241  membrane metallo endopeptidase
YP_001307512.1	PFAM: polysaccharide deacetylase; KEGG: cpf:CPF_0823 polysaccharide deacetylase family protein
YP_001307513.1	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: cpe:CPE0339 TldD protein
YP_001307514.1	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: cpf:CPF_0324 TldD/PmbA family protein
YP_001307515.1	PFAM: protein of unknown function DUF1113; KEGG: cpf:CPF_1398 hypothetical protein
YP_001307516.1	PFAM: sulfatase; KEGG: cpe:CPE2237 hypothetical protein
YP_001307517.1	KEGG: cpr:CPR_2206 predicted transcriptional regulator
YP_001307518.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cpe:CPE2235 probable monooxygenase
YP_001307519.1	PFAM: lipolytic protein, G-D-S-L family; KEGG: ctc:CTC00881  arylesterase
YP_001307520.1	PFAM: endodeoxyribonuclease RusA; KEGG: cpe:CPE2233 hypothetical protein
YP_001307521.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_001307522.1	KEGG: cpe:CPE2231 hypothetical protein
YP_001307523.1	PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: cpe:CPE2230 probable serine proteinase Do
YP_001307524.1	PFAM: phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit; KEGG: cpe:CPE2577 PTS system, cellobiose-specific II component
YP_001307525.1	KEGG: ctc:CTC00267 extracellular solute-binding protein
YP_001307526.1	PFAM: glycosyl transferase, group 1; KEGG: cpf:CPF_2487  mannosyltransferase
YP_001307527.1	TIGRFAM: Spore coat protein CotS; KEGG: cno:NT01CX_0586 spore coat protein S
YP_001307528.1	KEGG: ctc:CTC00270  spore coat protein
YP_001307529.1	TIGRFAM: Spore coat protein CotS; KEGG: cpe:CPE2220 probable spore coat protein
YP_001307530.1	PFAM: glycosyl transferase, group 1; KEGG: ctc:CTC00272 mannosyltransferase
YP_001307531.1	TIGRFAM: Spore coat protein CotS; KEGG: cpf:CPF_2482 spore coat protein CotS
YP_001307532.1	PFAM: peptidase U57, YabG; KEGG: cpe:CPE2217 conserved hypothetical protein
YP_001307533.1	PFAM: glutathione peroxidase; KEGG: cpr:CPR_1026 glutathione peroxidase
YP_001307534.1	PFAM: protein of unknown function DUF1021; KEGG: cac:CAC2904 uncharacterized protein, VEG B.subtilis ortholog
YP_001307535.1	PFAM: Peptidoglycan-binding LysM; KEGG: ctc:CTC00280 hypothetical protein
YP_001307536.1	TIGRFAM: cyanophycinase; PFAM: peptidase S51, dipeptidase E; KEGG: ctc:CTC00281 cyanophycinase
YP_001307537.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_001307538.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_001307539.1	TIGRFAM: Sporulation stage II, protein R; KEGG: ctc:CTC00288 stage II sporulation protein R
YP_001307540.1	PFAM: Domain of unknown function DUF1934; KEGG: cpf:CPF_2473 hypothetical protein
YP_001307541.1	KEGG: cno:NT01CX_0556 hypothetical protein
YP_001307542.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_001307543.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_001307544.1	PFAM: glycosyl transferase, group 1; Glycosyltransferase 28, C-terminal domain; Monogalactosyldiacylglycerol synthase; KEGG: cpf:CPF_2470  monogalactosyldiacylglycerol synthase
YP_001307545.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_001307546.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_001307547.1	TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; protein of unknown function DUF1385; KEGG: cpr:CPR_2177 modification methylase, HemK family
YP_001307548.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_001307549.1	KEGG: cpf:CPF_2465 hypothetical protein
YP_001307550.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: cpr:CPR_2174 SUA5/YciO/YrdC/YwlC family protein
YP_001307551.1	TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: cpr:CPR_2173 ribose 5-phosphate isomerase B
YP_001307552.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_001307553.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: cac:CAC2876 deoxycytidylate deaminase
YP_001307554.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: cpr:CPR_2171 UDP-N-acetylglucosamine 2-epimerase
YP_001307555.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_001307556.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_001307557.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_001307558.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel
YP_001307559.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_001307560.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_001307561.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_001307562.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_001307563.1	TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit; KEGG: cno:NT01CX_0529 ATP synthase F1, epsilon subunit
YP_001307564.1	KEGG: cpf:CPF_2450 hypothetical protein
YP_001307565.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001307566.1	TIGRFAM: SpoIID/LytB domain; Sporulation stage II, protein D firmicutes; PFAM: Stage II sporulation D domain protein; KEGG: ctc:CTC00315 stage II sporulation protein D
YP_001307567.1	PFAM: peptidase M23B; KEGG: ctc:CTC00316 conserved membrane-associated protein
YP_001307568.1	TIGRFAM: Sporulation stage III, transcriptional regulator SpoIIID; KEGG: cpr:CPR_2156 stage III sporulation protein D
YP_001307569.1	TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: cno:NT01CX_0523 cell shape determining protein, MreB/Mrl family
YP_001307570.1	PFAM: protein of unknown function DUF1256; KEGG: cac:CAC2857 spore protease GPR related protein, YYAC B.subtilis ortholog
YP_001307571.1	KEGG: cpe:CPE2178 hypothetical protein
YP_001307572.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_001307573.1	TIGRFAM: helicase, RecD/TraA family; SMART: Helix-hairpin-helix DNA-binding, class 1; ATPase AAA; KEGG: cpr:CPR_2143 helicase, RecD/TraA family
YP_001307574.1	KEGG: ctc:CTC00323 hypothetical protein
YP_001307575.1	KEGG: cpf:CPF_2431 ComF protein
YP_001307576.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: cpf:CPF_2430 ribosomal subunit interface protein
YP_001307577.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_001307578.1	catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA
YP_001307579.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_1403 DNA-binding response regulator
YP_001307580.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ctc:CTC00849 two-component sensor histidine kinase
YP_001307581.1	PFAM: peptidase M50; KEGG: dsy:DSY1792 hypothetical protein
YP_001307583.1	PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: cpr:CPR_2136 transcription accessory protein
YP_001307584.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: ooe:OEOE_0048 predicted dehydrogenase or related protein
YP_001307585.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: cac:CAC2782 predicted permease
YP_001307586.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bcl:ABC0373 transcriptional regulator, AraC/XylS family
YP_001307587.1	PFAM: ROK family protein; KEGG: cpf:CPF_2334 ROK family protein
YP_001307588.1	PFAM: glutamine synthetase, catalytic region; KEGG: cth:Cthe_0863 glutamine synthetase, catalytic region
YP_001307589.1	TIGRFAM: rhamnulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: bha:BH1551 rhamnulokinase
YP_001307590.1	catalyzes the formation of L-rhamnulose from L-rhamnose
YP_001307591.1	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
YP_001307592.1	Involved in the metabolism of 2-deoxyglucose
YP_001307593.1	PFAM: glycosyl hydrolase, family 88; KEGG: efa:EF0428 hypothetical protein
YP_001307594.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: efa:EF0438 hypothetical protein
YP_001307595.1	KEGG: eca:ECA3560 oligogalacturonide transporter
YP_001307596.1	TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; KEGG: msu:MS2324 uncharacterized ACR
YP_001307597.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: ecv:APECO1_839  DeoR-type transcriptional regulator
YP_001307598.1	PFAM: class II aldolase/adducin family protein; KEGG: msu:MS2327 ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
YP_001307599.1	TIGRFAM: lactaldehyde reductase; PFAM: iron-containing alcohol dehydrogenase; KEGG: cpf:CPF_1046 lactaldehyde reductase
YP_001307600.1	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated
YP_001307601.1	PFAM: regulatory protein, DeoR; KEGG: smu:SMU.507  transcriptional regulator (DeoR family)
YP_001307602.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: gfo:orf2334 haloacid dehalogenase-like hydrolase
YP_001307603.1	PFAM: IclR family transcriptional regulator; Transcriptional regulator IclR-like; KEGG: cno:NT01CX_1476 transcription regulator (IclR family) BH2137
YP_001307604.1	Involved in the metabolism of 2-deoxyglucose
YP_001307605.1	PFAM: PfkB domain protein; KEGG: oih:OB2698 2-keto-3-deoxygluconate kinase
YP_001307606.1	TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: tma:TM0066 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase
YP_001307607.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cth:Cthe_3118 hemerythrin-like metal-binding protein
YP_001307608.1	KEGG: cpr:CPR_2135 conserved membrane protein, probable transporter YPAA
YP_001307609.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_3222 rubredoxin-type Fe(Cys)4 protein
YP_001307610.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: cac:CAC0113 transcriptional regulator of sugar metabolism
YP_001307611.1	TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: cth:Cthe_1774 ribosomal-protein-alanine acetyltransferase
YP_001307612.1	PFAM: peptidase M22, glycoprotease; KEGG: cpe:CPE2165 probable glycoprotein endopeptidase
YP_001307613.1	PFAM: protein of unknown function UPF0079; KEGG: cpe:CPE2164 conserved hypothetical protein
YP_001307614.1	PFAM: periplasmic solute binding protein; KEGG: ctc:CTC02442  zinc-binding lipoprotein (adhesin B)
YP_001307615.1	TIGRFAM:  endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: dsy:DSY1808 hypothetical protein
YP_001307616.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: cpe:CPE0992 hypothetical protein
YP_001307617.1	KEGG: pfa:PF10_0171 hypothetical protein
YP_001307618.1	PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: cpr:CPR_2128 small, acid-soluble spore protein 1
YP_001307619.1	PFAM: metallophosphoesterase; KEGG: cpf:CPF_2416 Ser/Thr protein phosphatase family protein
YP_001307620.1	KEGG: cpr:CPR_2126 hypothetical protein
YP_001307621.1	PFAM: periplasmic solute binding protein; KEGG: cpf:CPF_2413 ABC transporter substrate-binding protein
YP_001307622.1	PFAM: DNA mismatch repair protein MutS domain protein; KEGG: cpr:CPR_2123 MutS domain protein
YP_001307623.1	PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cpr:CPR_2121 exonuclease family protein
YP_001307624.1	PFAM: CBS domain containing protein; KEGG: cpr:CPR_2120 two CBS domain containing protein
YP_001307625.1	KEGG: cac:CAC0312 hypothetical protein
YP_001307626.1	PFAM: PspA/IM30 family protein; KEGG: cac:CAC0313 phage shock protein A
YP_001307627.1	KEGG: rno:689513 hypothetical protein LOC689513
YP_001307628.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_001307629.1	TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; KEGG: cpf:CPF_2404 pyruvate kinase
YP_001307630.1	TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: cpf:CPF_2403 aminoacyl-histidine dipeptidase
YP_001307631.1	PFAM: NLP/P60 protein; KEGG: ctc:CTC02078 hypothetical lipoprotein
YP_001307632.1	KEGG: cno:NT01CX_1684 hypothetical protein
YP_001307633.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_001307634.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_001307635.1	functions in MreBCD complex in some organisms
YP_001307636.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_001307637.1	KEGG: cpr:CPR_2108 rod shape-determining protein MreD
YP_001307638.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: cpr:CPR_2107 penicillin-binding protein dimerisation domain family
YP_001307639.1	Regulatory factor involved in maltose metabolism
YP_001307640.1	blocks the formation of polar Z-ring septums
YP_001307641.1	TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: cpr:CPR_2105 septum site-determining protein MinD
YP_001307642.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_001307643.1	PFAM: cell cycle protein; KEGG: cpe:CPE2136 stage V sporulation protein E
YP_001307644.1	KEGG: cno:NT01CX_0087 cell wall endopeptidase, family M23/M37
YP_001307645.1	PFAM: peptidase M50; KEGG: cno:NT01CX_0086 sterol-regulatory element binding protein (SREBP) site 2 protease
YP_001307646.1	KEGG: cpr:CPR_1376 hypothetical protein
YP_001307647.1	PFAM: S-layer domain protein domain protein; Propeptide, PepSY amd peptidase M4; KEGG: cth:Cthe_2168 propeptide, PepSY amd peptidase M4
YP_001307648.1	KEGG: mpe:MYPE1550 predicted cytoskeletal protein
YP_001307649.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cpr:CPR_2100 radical SAM domain protein
YP_001307650.1	KEGG: cpe:CPE2132 hypothetical protein
YP_001307651.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cpf:CPF_2386 ribonuclease, Rne/Rng family
YP_001307652.1	PFAM: ribosomal protein L21; KEGG: cpr:CPR_2097 ribosomal protein L21
YP_001307653.1	PFAM: protein of unknown function DUF464; KEGG: cpf:CPF_2384 hypothetical protein
YP_001307654.1	involved in the peptidyltransferase reaction during translation
YP_001307655.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_001307656.1	PFAM: protein of unknown function UPF0044; KEGG: cpr:CPR_2093  RNA-binding protein
YP_001307657.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_001307658.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cpr:CPR_2091 HD domain protein
YP_001307659.1	TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cpr:CPR_2090 transcription regulator LytR-like protein lin0463
YP_001307660.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: cpe:CPE2122 conserved hypothetical protein
YP_001307661.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: cac:CAC0023 transcriptional regulator, LysR family
YP_001307662.1	catalyzes the formation of aspartate semialdehyde from aspartyl phosphate
YP_001307663.1	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: cno:NT01CX_0071 D-alanyl-D-alanine carboxypeptidase
YP_001307664.1	TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; KEGG: cpf:CPF_2375  ComE operon protein 1
YP_001307667.1	TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; DNA methylase N-4/N-6 domain protein; conserved hypothetical protein 95; methyltransferase small; (Uracil-5)-methyltransferase; KEGG: cpf:CPF_2370 23S rRNA (uracil-5-)-methyltransferase RumA
YP_001307668.1	PFAM: PRD domain protein; Helix-turn-helix, type 11 domain protein; KEGG: tte:TTE0598  transcriptional regulator
YP_001307669.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: gka:GK2018 hypothetical protein
YP_001307670.1	KEGG: vpa:VPA0504 hypothetical protein
YP_001307671.1	TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: vpa:VPA0501 mannitol-specific PTS system enzyme II component
YP_001307672.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: vpa:VPA0502  oxidoreductase
YP_001307673.1	PFAM: ribulose-phosphate 3-epimerase; KEGG: ctc:CTC01227 ribulose-phosphate 3-epimerase
YP_001307674.1	PFAM: sugar isomerase (SIS); KEGG: bsu:BG11182 6-phospho-3-hexuloisomerase
YP_001307675.1	PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: bld:BLi00507 mannitol-1-phosphate dehydrogenase; RBL03232
YP_001307676.1	TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: cac:CAC1348 transketolase, TKT
YP_001307677.1	KEGG: cth:Cthe_1700 recombinase
YP_001307678.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY3639 hypothetical protein
YP_001307679.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dsy:DSY3638 hypothetical protein
YP_001307680.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: lwe:lwe0973 MatE family efflux protein
YP_001307681.1	PFAM: response regulator receiver; KEGG: swo:Swol_0863 response regulator receiver protein
YP_001307684.1	PFAM: sigma-54 factor, interaction domain-containing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PTS system fructose subfamily IIA component; PRD domain protein; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: tte:TTE0180 NtrC family transcriptional regulator, ATPase domain
YP_001307685.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: lwe:lwe0346 PTS system, IIA component
YP_001307686.1	KEGG: lwe:lwe0348 PTS system, galactitol-specific IIB component
YP_001307687.1	PFAM: PTS system Galactitol-specific IIC component; KEGG: lwe:lwe0349 PTS system, galactitol-specific IIC component
YP_001307688.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: lmf:LMOf2365_0535 alcohol dehydrogenase, zinc-dependent
YP_001307689.1	PFAM: Transketolase domain protein; KEGG: cpf:CPF_0292  transketolase, N-terminal subunit
YP_001307690.1	PFAM: Transketolase, central region; Transketolase domain protein; KEGG: cpr:CPR_0288 transketolase
YP_001307691.1	PFAM: ribulose-phosphate 3-epimerase; KEGG: tte:TTE1498 Pentose-5-phosphate-3-epimerase
YP_001307692.1	TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: tte:TTE0146 ribose 5-phosphate isomerase B
YP_001307693.1	catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
YP_001307694.1	PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: lwe:lwe1891 phosphoglucomutase/phosphomannomutase family protein
YP_001307695.1	KEGG: mst:Msp_0992  endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease, family 2
YP_001307696.1	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: cpe:CPE1567 probable peptidyl-prolyl cis-trans isomerase B
YP_001307697.1	PFAM: carbon starvation protein CstA; KEGG: cac:CAC1669 carbon starvation protein
YP_001307698.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: ctc:CTC01978 two-component sensor histidine kinase
YP_001307699.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: ctc:CTC01979 transcriptional regulatory protein
YP_001307700.1	PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; KEGG: cac:CA_P0107 HTH transcriptional regulator MerR family
YP_001307701.1	PFAM: aldo/keto reductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mma:MM1948 oxidoreductase, aldo/keto reductase family
YP_001307702.1	PFAM: protein of unknown function DUF111; KEGG: cac:CAC0774 hypothetical protein
YP_001307703.1	PFAM: ExsB family protein; PP-loop domain protein; KEGG: cac:CAC0775 ATP-utilizing enzyme of the PP-loop superfamily
YP_001307704.1	KEGG: cac:CAC0776 NCAIR mutase (PurE)-related protein
YP_001307705.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: tte:TTE0012 NADH:flavin oxidoreductases, Old Yellow Enzyme family
YP_001307706.1	KEGG: cac:CAC0143 hypothetical protein
YP_001307708.1	KEGG: cpf:CPF_1219 hypothetical protein
YP_001307709.1	PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: cac:CAC0579 serine protein kinase (PrkA protein), P-loop containing
YP_001307710.1	TIGRFAM: Sporulation protein YhbH; PFAM: protein of unknown function DUF444; KEGG: cpe:CPE1333 hypothetical protein
YP_001307711.1	PFAM: SpoVR family protein; KEGG: cpf:CPF_1539 stage V sporulation protein R
YP_001307712.1	PFAM: Rubrerythrin; KEGG: cpr:CPR_1331 rubrerythrin
YP_001307714.1	KEGG: cpe:CPE1330 hypothetical protein
YP_001307715.1	TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cpr:CPR_1329 CDP-diacylglycerol--serine O-phosphatidyltransferase
YP_001307716.1	similar to YegS from E. coli
YP_001307717.1	KEGG: cno:NT01CX_1387 hypothetical protein
YP_001307718.1	PFAM: Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cno:NT01CX_1388 radical SAM domain protein
YP_001307719.1	PFAM: CBS domain containing protein; MgtE intracellular region; PRC-barrel domain protein; KEGG: cpf:CPF_1530 CBS domain/MgtE intracellular domain protein
YP_001307720.1	TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: cpr:CPR_1322 cysteine synthase A
YP_001307721.1	TIGRFAM: serine O-acetyltransferase; KEGG: cpr:CPR_1321 serine O-acetyltransferase
YP_001307722.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: ctc:CTC00354 1-acyl-sn-glycerol-3-phosphate acyltransferase
YP_001307723.1	TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; KEGG: cpr:CPR_1318 endonuclease III
YP_001307724.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_001307725.1	PFAM: ferric-uptake regulator; KEGG: cac:CAC0951 ferric uptake regulation protein
YP_001307726.1	KEGG: cac:CAC0950 predicted membrane protein
YP_001307727.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_001307728.1	PFAM: aminotransferase, class V; KEGG: cpf:CPF_1720 aminotransferase, class V
YP_001307730.1	PFAM: regulatory protein, TetR; KEGG: bld:BLi02242 TetR
YP_001307731.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpf:CPF_1721 ABC transporter ATP-binding protein
YP_001307732.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC00805 two-component response regulator
YP_001307733.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ctc:CTC00806 sensory transduction protein kinase
YP_001307734.1	PFAM: glycoside hydrolase, family 25; KEGG: cpe:CPE1314 muramidase
YP_001307735.1	PFAM: VanW family protein; G5 domain protein; KEGG: cpe:CPE1313 hypothetical protein
YP_001307736.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cpf:CPF_1518 RNA methyltransferase, TrmH family, group 2
YP_001307737.1	TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cpr:CPR_1307 DegV family protein
YP_001307738.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_001307739.1	PFAM:  sugar-binding domain protein; KEGG: cpe:CPE1305 probable transcriptional regulator
YP_001307740.1	TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: cpr:CPR_1301 glyceraldehyde-3-phosphate dehydrogenase, type I
YP_001307741.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_001307742.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_001307743.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_001307744.1	KEGG: cpf:CPF_2245 hypothetical protein
YP_001307745.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_001307746.1	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: cpr:CPR_1293 preprotein translocase, SecG subunit
YP_001307747.1	PFAM: NMT1/THI5 like; SMART: extracellular solute-binding protein, family 3; KEGG: cth:Cthe_1570 extracellular solute-binding protein, family 3
YP_001307748.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_1571 binding-protein-dependent transport systems inner membrane component
YP_001307749.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cth:Cthe_1572 ABC transporter protein
YP_001307750.1	TIGRFAM: ATPase P; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cth:Cthe_1848 copper-translocating P-type ATPase
YP_001307751.1	KEGG: cth:Cthe_1849 heavy metal transport/detoxification protein
YP_001307752.1	TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: bth:BT_2387 O-acetylhomoserine (thiol)-lyase
YP_001307753.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY1353 hypothetical protein
YP_001307754.1	KEGG: cth:Cthe_1570 extracellular solute-binding protein, family 3
YP_001307755.1	PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rru:Rru_A0794 nitrogenase
YP_001307756.1	PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rru:Rru_A0793 nitrogenase
YP_001307757.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msm:MSMEG_1161 taurine transport system permease TauC
YP_001307758.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro04945 ABC transporter permease component
YP_001307759.1	KEGG: dsy:DSY1354 hypothetical protein
YP_001307760.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1355 hypothetical protein
YP_001307761.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1355 hypothetical protein
YP_001307762.1	KEGG: mta:Moth_1978 hypothetical protein
YP_001307763.1	PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cth:Cthe_1565 nitrogenase
YP_001307764.1	PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cth:Cthe_1566 nitrogenase
YP_001307765.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cth:Cthe_1569 O-acetylhomoserine aminocarboxypropyltransferase
YP_001307766.1	TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein; KEGG: cth:Cthe_1573 nitrogenase iron protein
YP_001307767.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gka:GK2999 ABC transporter (ATP-binding protein)
YP_001307768.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0659 ABC transporter permease
YP_001307769.1	PFAM: NLPA lipoprotein; KEGG: cac:CAC0986 lipoprotein, attached to the cytoplasmic membrane, NLPA family
YP_001307770.1	PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: mac:MA2936 hypothetical protein
YP_001307771.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_1568 radical SAM
YP_001307772.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cac:CAC0930 cystathionine gamma-synthase
YP_001307773.1	PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: cac:CAC0931 cysteine synthase
YP_001307774.1	PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rru:Rru_A0794 nitrogenase
YP_001307775.1	PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rru:Rru_A0793 nitrogenase
YP_001307776.1	KEGG: cpf:CPF_1502 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein
YP_001307777.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_001307778.1	PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: cac:CAC0353 2,3-cyclic-nucleotide 2'phosphodiesterase (duplication)
YP_001307779.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC0984 ABC transporter ATP-binding protein
YP_001307780.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cno:NT01CX_0185 ABC transporter permease
YP_001307781.1	TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: cno:NT01CX_0184 lipoprotein, attached to the cytoplasmic membrane, NlpA family
YP_001307782.1	PFAM: protein of unknown function DUF1232; KEGG: cpr:CPR_1437 hypothetical protein
YP_001307783.1	KEGG: cno:NT01CX_1570 ribonuclease HI
YP_001307785.1	PFAM: helix-turn-helix domain protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cpr:CPR_1434 helix-turn-helix domain protein
YP_001307786.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: ctc:CTC00534 ferrous iron transport protein B homolog
YP_001307787.1	PFAM: CBS domain containing protein; KEGG: dsy:DSY1459 hypothetical protein
YP_001307788.1	PFAM: ATPase AAA, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: ATPase AAA; KEGG: cno:NT01CX_2301 ClpB protein
YP_001307789.1	KEGG: cpe:CPE1421 hypothetical protein
YP_001307790.1	catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate
YP_001307791.1	PFAM: thiamine monophosphate synthase; KEGG: cno:NT01CX_1504 thiamine-phosphate pyrophosphorylase
YP_001307792.1	PFAM: PP-loop domain protein; KEGG: cpr:CPR_1477 PP-loop family protein
YP_001307793.1	KEGG: cno:NT01CX_1350 hypothetical protein
YP_001307794.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cno:NT01CX_2347 diguanylate cyclase/phosphodiesterase domain 2
YP_001307795.1	KEGG: cpf:CPF_1504  tryptophan transport protein
YP_001307796.1	PFAM: polysaccharide deacetylase; KEGG: cpe:CPE1477 probable endo-1,4-beta-xylanase
YP_001307797.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cno:NT01CX_0237 GGDEF domain protein
YP_001307798.1	PFAM: Cna B domain protein; KEGG: cpf:CPF_1723 hypothetical protein
YP_001307799.1	TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: cno:NT01CX_0028 deoxyuridine 5triphosphate nucleotidohydrolase
YP_001307800.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mgm:Mmc1_1056 methyltransferase type 11
YP_001307801.1	PFAM: Accessory gene regulator B; KEGG: cpf:CPF_0865 AgrB family protein
YP_001307802.1	PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: cpf:CPF_0863  sensor histidine kinase
YP_001307803.1	PFAM: Accessory gene regulator B; KEGG: cpf:CPF_0865 AgrB family protein
YP_001307804.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cpf:CPF_1464 oxidoreductase, NAD-binding
YP_001307805.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_001307806.1	PFAM: protein of unknown function DUF161; KEGG: cpf:CPF_1372 hypothetical protein
YP_001307807.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, C-terminal all-beta; alpha amylase, catalytic sub domain; KEGG: cac:CA_P0168 alpha-amylase
YP_001307808.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC1387 membrane associated chemotaxis sensory transducer protein (MSP domain and HamP domain)
YP_001307809.1	KEGG: aba:Acid345_2515  anti-sigma regulatory factor, serine/threonine protein kinase
YP_001307810.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY2131 hypothetical protein
YP_001307811.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dsy:DSY3263 hypothetical protein
YP_001307812.1	TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein; KEGG: mhu:Mhun_0004 multi-sensor signal transduction histidine kinase
YP_001307813.1	KEGG: eca:ECA4448 hypothetical protein
YP_001307814.1	KEGG: tte:TTE2433 hypothetical protein
YP_001307815.1	PFAM: transposase, mutator type; KEGG: swo:Swol_0155 hypothetical protein
YP_001307816.1	KEGG: oih:OB2869 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
YP_001307817.1	KEGG: gsu:GSU1737 phenylacetate-CoA ligase
YP_001307818.1	KEGG: mbu:Mbur_2297 transposase
YP_001307819.1	TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cac:CAC1452 MDR-type permease
YP_001307820.1	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: cac:CAC1451 AraC-type DNA-binding domain-containing protein
YP_001307821.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpf:CPF_0136 ABC transporter ATP-binding protein
YP_001307822.1	PFAM: O-methyltransferase, family 3; KEGG: cno:NT01CX_2271 O-methyltransferase family
YP_001307823.1	PFAM: Thioesterase; KEGG: bcz:BCZK1713 thioesterase
YP_001307825.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bas:BUsg532 hypothetical 42.6 kD protein in gshB-ansB
YP_001307826.1	PFAM: AMP-dependent synthetase and ligase; KEGG: hch:HCH_06164 acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
YP_001307827.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: tpe:Tpen_0821 alcohol dehydrogenase GroES domain protein
YP_001307828.1	PFAM: AMP-dependent synthetase and ligase; KEGG: sdn:Sden_3532 amino acid adenylation
YP_001307829.1	PFAM: 4'-phosphopantetheinyl transferase; KEGG: rpc:RPC_3373 4'-phosphopantetheinyl transferase
YP_001307830.1	PFAM: beta-lactamase domain protein; KEGG: bsu:BG12648 involved in polyketide synthesis
YP_001307832.1	PFAM: Radical SAM domain protein; KEGG: pai:PAE1082 hypothetical protein
YP_001307833.1	PFAM: acyl-ACP thioesterase; KEGG: ctc:CTC00119 acyl-acyl carrier protein thioesterase
YP_001307834.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_001307835.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: mbu:Mbur_2004 RNA-directed DNA polymerase
YP_001307836.1	PFAM: guanine-specific ribonuclease N1 and T1; KEGG: cac:CAC0843 ribonuclease precursor (barnase), secreted
YP_001307837.1	PFAM: Barstar (barnase inhibitor); KEGG: cac:CAC0844 barstar-like protein ribonuclease (barnase) inhibitor
YP_001307838.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cpr:CPR_2604 transcriptional regulator, RpiR family
YP_001307839.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_001307840.1	PFAM: glycoside hydrolase, family 1; KEGG: eca:ECA2166 6-phospho-beta-glucosidase
YP_001307841.1	TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: spd:SPD_0229 glycyl-radical enzyme activating protein family protein
YP_001307842.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: ssa:SSA_0278 transcriptional repressor of sugar metabolism, GlpR/DeoR family
YP_001307843.1	KEGG: lme:LEUM_0362 hypothetical protein
YP_001307844.1	PFAM: helix-turn-helix domain protein; KEGG: ssa:SSA_2393 transcriptional regulator, XRE family
YP_001307845.1	TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: lpl:lp_2598 formate C-acetyltransferase
YP_001307846.1	PFAM: regulatory protein, MarR; KEGG: cac:CAC3669 transcriptional regulator, MarR/EmrR family
YP_001307847.1	PFAM: major facilitator superfamily MFS_1; KEGG: oih:OB3076 antibiotic resistance protein
YP_001307848.1	PFAM: cobalamin B12-binding domain protein; KEGG: mbu:Mbur_0956 cobalamin B12-binding protein
YP_001307849.1	PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: mbu:Mbur_0957 uroporphyrinogen decarboxylase (URO-D)
YP_001307850.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cth:Cthe_0806 PAS/PAC sensor hybrid histidine kinase
YP_001307851.1	TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA subunit; PFAM: PTS system fructose subfamily IIA component; PTS system sorbose subfamily IIB component; KEGG: cac:CA_P0066 mannose-specific phosphotransferase system component IIAB
YP_001307852.1	PFAM: phosphotransferase system PTS, sorbose-specific IIC subunit; KEGG: cac:CA_P0067 mannose/fructose-specific phosphotransferase system component IIC
YP_001307853.1	TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: cac:CA_P0068 mannose-specific phosphotransferase system component IID
YP_001307854.1	PFAM: protein of unknown function DUF956; KEGG: cac:CA_P0069 uncharacterized protein, homolog of Streptococcus salivarius (5669858)
YP_001307855.1	PFAM: nitroreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cac:CAC3483 nitroreductase fused to ferredoxin domain
YP_001307856.1	PFAM: major facilitator superfamily MFS_1; KEGG: cac:CAC0560 integral membrane protein similar to antibiotic resistance protein B.subtilis
YP_001307857.1	SMART: helix-turn-helix domain protein; KEGG: rle:RL4049 hypothetical protein
YP_001307858.1	PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; KEGG: bca:BCE_A0172 transcriptional regulator, MarR family protein
YP_001307859.1	PFAM: Integrase, catalytic region; KEGG: sar:SAR2307  transposase
YP_001307860.1	KEGG: cpr:CPR_2608 hypothetical protein
YP_001307861.1	TIGRFAM: phage replisome organizer, KEGG: sao:SAOUHSC_02069 phi PV83 orf 20-like protein
YP_001307862.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: bsu:BG14032 similar to transcriptional regulator (LysR family)
YP_001307863.1	TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: chy:CHY_0588 drug resistance transporter EmrB/QacA family protein
YP_001307864.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: dsy:DSY3551 hypothetical protein
YP_001307865.1	PFAM: nitroreductase; KEGG: bth:BT_1148  NADH dehydrogenase/NAD(P)H nitroreductase
YP_001307866.1	PFAM: regulatory protein, MerR; KEGG: lbr:LVIS_2182 predicted transcriptional regulator
YP_001307867.1	PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_A1903 aldehyde dehydrogenase
YP_001307868.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cno:NT01CX_1999 SAM-dependent methyltransferase
YP_001307869.1	PFAM: aldehyde dehydrogenase; KEGG: fnu:FN0454 aldehyde dehydrogenase B
YP_001307870.1	KEGG: cac:CAC0729 hypothetical protein
YP_001307871.1	PFAM: LacI family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_06458 transcriptional regulator
YP_001307872.1	PFAM: extracellular solute-binding protein, family 1; KEGG: bcl:ABC3496 sugar ABC transporter substrate-binding protein
YP_001307873.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ooe:OEOE_0810 ABC-type sugar transport system, permease component
YP_001307874.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3498 sugar ABC transporter permease
YP_001307875.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: bcz:BCZK3772 oligo-1,6-glucosidase
YP_001307877.1	PFAM: peptidase U32; KEGG: dsy:DSY0725 hypothetical protein
YP_001307878.1	PFAM: major facilitator superfamily MFS_1; KEGG: cac:CAC3482 predicted permease
YP_001307879.1	PFAM: NADPH-dependent FMN reductase; KEGG: gsu:GSU0179 NADPH-dependent FMN reductase domain protein
YP_001307880.1	PFAM: regulatory protein, TetR; KEGG: cac:CAC3481 transcriptional regulator, AcrR family
YP_001307881.1	PFAM: protein of unknown function DUF988; KEGG: cpr:CPR_1478 hypothetical protein
YP_001307882.1	KEGG: cac:CAC0739 predicted membrane protein
YP_001307883.1	KEGG: cpr:CPR_1272 FliB family protein
YP_001307884.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: pin:Ping_1200 diguanylate cyclase with PAS/PAC sensor
YP_001307885.1	KEGG: cpf:CPF_0234 hypothetical protein
YP_001307886.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: dsy:DSY3551 hypothetical protein
YP_001307887.1	PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: cac:CAC3457 predicted membrane protein
YP_001307888.1	TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sar:SAR0140 deoxyribose-phosphate aldolase
YP_001307889.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: tte:TTE2419 transcriptional regulator
YP_001307890.1	PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: cpr:CPR_1270 transcription elongation factor GreA
YP_001307891.1	TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease, EIIA 1 domain; phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: gka:GK0991 PTS system, glucose-specific enzyme II, A component
YP_001307892.1	PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: cac:CAC1355 transcriptional antiterminator (BglG family)
YP_001307893.1	KEGG: mpe:MYPE1550 predicted cytoskeletal protein
YP_001307894.1	PFAM: toxic anion resistance family protein; KEGG: ser:SERP0976 tellurite resistance protein
YP_001307895.1	PFAM: response regulator receiver; CheW domain protein; KEGG: cno:NT01CX_2338 chemotaxis protein CheV-like protein
YP_001307896.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: cac:CAC0747 secreted protein containing uncharacterized conserved protein of ErfK family
YP_001307897.1	KEGG: cac:CAC0747 secreted protein containing uncharacterized conserved protein of ErfK family
YP_001307898.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: spn:SP_0249 PTS system, IIB component
YP_001307899.1	PFAM: aminotransferase, class V; KEGG: cpf:CPF_0845 aminotransferase, class V
YP_001307900.1	KEGG: ctc:CTC01976 membrane spanning protein
YP_001307901.1	TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase; KEGG: cac:CAC1431 ribose 5-phosphate isomerase
YP_001307902.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: cac:CAC3400 predicted dehydrogenase
YP_001307903.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: lsl:LSL_1438 transcriptional regulator, RpiR family
YP_001307904.1	PFAM: aldo/keto reductase; KEGG: cac:CAC3378 aldo/keto reductase family enzyme
YP_001307905.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cac:CAC0327 bacterioferritin comigratory protein (AHPC/TSA family)
YP_001307906.1	TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bth:BT_2387 O-acetylhomoserine (thiol)-lyase
YP_001307907.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: spd:SPD_0574 DNA-binding response regulator
YP_001307908.1	PFAM: histidine kinase, HAMP region domain protein; histidine kinase internal region; KEGG: tte:TTE2344 predicted ATPase
YP_001307909.1	PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH2226 multiple sugar transport system substrate-binding protein
YP_001307910.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00038 probable sugar ABC transporter permease
YP_001307911.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cno:NT01CX_0967 sugar ABC transporter permease
YP_001307912.1	catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides
YP_001307913.1	TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; Oligopeptidase F; KEGG: tte:TTE2488 oligoendopeptidase F
YP_001307914.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cpr:CPR_2063 polyferredoxin
YP_001307915.1	KEGG: fnu:FN0522 exonuclease SBCC
YP_001307916.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: ssp:SSP1650 thioredoxin
YP_001307917.1	PFAM: glutathione peroxidase; KEGG: llm:llmg_1088 Gpo protein
YP_001307918.1	PFAM: glucose-inhibited division protein A; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cpr:CPR_2349 thioredoxin reductase
YP_001307919.1	PFAM: regulatory protein, MarR; KEGG: cpr:CPR_1032 transcriptional regulator, MarR family
YP_001307920.1	PFAM: cyclic nucleotide-binding; KEGG: cac:CAC0884 cAMP-binding domain (catabolite gene activator) and regulatory subunit of cAMP-dependent protein kinase
YP_001307921.1	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: cac:CAC1511 FNR-like catabolite gene activator (c-AMP binding domain)
YP_001307922.1	PFAM: formate/nitrite transporter; KEGG: cac:CAC1512 formate/nitrite family of transporter
YP_001307923.1	TIGRFAM: Sulfite reductase, Subunit A; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cpf:CPF_1693 sulfite reductase, iron-sulfur subunit
YP_001307924.1	with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide
YP_001307925.1	TIGRFAM: Sulfite reductase, Subunit C; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: cpf:CPF_1691 anaerobic sulfite reductase, subunit C
YP_001307926.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_001307927.1	PFAM: amino acid permease-associated region; KEGG: cac:CA_P0027 predicted amino acid permeases
YP_001307928.1	PFAM: amino acid permease-associated region; KEGG: cno:NT01CX_2354 lysine-specific permease
YP_001307929.1	KEGG: dsy:DSY1434 hypothetical protein
YP_001307930.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY1433 hypothetical protein
YP_001307931.1	PFAM: GntR family transcriptional regulator; KEGG: dsy:DSY1432 hypothetical protein
YP_001307932.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_001307933.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_001307934.1	TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; KEGG: cno:NT01CX_0088 nicotinate-nucleotide pyrophosphorylase
YP_001307935.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cth:Cthe_0035 4Fe-4S ferredoxin, iron-sulfur binding
YP_001307936.1	PFAM: UspA domain protein; KEGG: gme:Gmet_2678 UspA
YP_001307938.1	TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; KEGG: lsa:LSA0327 tryptophanyl--tRNA synthetase
YP_001307940.1	PFAM: peptidase M29, aminopeptidase II; KEGG: ctc:CTC01997 aminopeptidase II
YP_001307941.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_001307942.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_001307943.1	PFAM: Lytic transglycosylase, catalytic; KEGG: cpr:CPR_1960 secreted protein
YP_001307944.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01881 methyl-accepting chemotaxis protein
YP_001307945.1	KEGG: cno:NT01CX_0286 phage infection protein
YP_001307946.1	KEGG: cno:NT01CX_0286 phage infection protein
YP_001307947.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cpe:CPE1987 two-component sensor histidine kinase
YP_001307948.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cpf:CPF_2241 sensor histidine kinase
YP_001307949.1	PFAM: TspO/MBR family protein; KEGG: cpr:CPR_1952 TspO/MBR family protein
YP_001307950.1	KEGG: cpr:CPR_2023 ATP-dependent protease
YP_001307951.1	KEGG: cef:CE0340  transposase
YP_001307952.1	TIGRFAM: anti-anti-sigma factor; Anti-sigma F factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cpr:CPR_2022 anti-sigma F factor antagonist
YP_001307953.1	binds to sigma F preventing its association with RNA polymerase during sporulation
YP_001307954.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.
YP_001307955.1	TIGRFAM: Sporulation stage V, protein AC; PFAM: SpoVA protein; KEGG: ctc:CTC02245 stage V sporulation protein AC
YP_001307956.1	PFAM: Stage V sporulation AD family protein; KEGG: cpf:CPF_2303 stage V sporulation protein AD
YP_001307957.1	TIGRFAM: Sporulation stage V, protein AE; PFAM: SpoVA protein; KEGG: cpr:CPR_2017 stage V sporulation protein AE
YP_001307958.1	PFAM: E1-E2 ATPase-associated domain protein; KEGG: cno:NT01CX_0068 probable calcium-transporting ATPase
YP_001307959.1	PFAM: ComEC/Rec2-related protein; KEGG: cno:NT01CX_0067 ComE operon protein 3
YP_001307960.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_001307961.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_001307962.1	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
YP_001307963.1	PFAM: Stage II sporulation P family protein; KEGG: cpr:CPR_2012 stage II sporulation protein P
YP_001307965.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_001307966.1	KEGG: cpe:CPE1377 hypothetical protein
YP_001307967.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001307968.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_001307969.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_001307970.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_001307971.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_001307972.1	PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: cac:CAC0094 ferredoxin-nitrite reductase
YP_001307973.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_001307974.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_001307975.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_001307976.1	TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB; KEGG: cpr:CPR_1997 MiaB-like tRNA modifying enzyme
YP_001307977.1	PFAM: histidine triad (HIT) protein; KEGG: cpf:CPF_2281 HIT family protein
YP_001307978.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_001307979.1	PFAM: GatB/Yqey domain protein; KEGG: cpr:CPR_1994 GatB/YqeY domain protein
YP_001307980.1	PFAM: protein of unknown function DUF1429; KEGG: cno:NT01CX_0049 hypothetical protein
YP_001307981.1	PFAM:  stage IV sporulation YqfD; KEGG: cpr:CPR_1992 stage IV sporulation protein
YP_001307982.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; metal-dependent phosphohydrolase, 7TM intracellular region; metal-dependent phosphohydrolase, 7TM extracellular region; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cpf:CPF_2276  hydrolase
YP_001307983.1	PFAM: protein of unknown function UPF0054; KEGG: cpf:CPF_2275 conserved hypothetical protein TIGR00043
YP_001307984.1	PFAM: phosphoesterase, PA-phosphatase related; diacylglycerol kinase; KEGG: cpf:CPF_2274 diacylglycerol kinase/PAP2 family protein
YP_001307985.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_001307986.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_001307987.1	PFAM: ubiquitin-associated- domain-containing protein; KEGG: cpr:CPR_1985 N-terminal truncated of elongation factor Ts
YP_001307988.1	PFAM: CBS domain containing protein; Helix-turn-helix, type 11 domain protein; KEGG: cpf:CPF_2269 CBS domain protein
YP_001307989.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001307990.1	TIGRFAM: Spore coat protein CotS; KEGG: ctc:CTC02013 spore coat protein S
YP_001307991.1	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_001307992.1	synthesizes RNA primers at the replication forks
YP_001307993.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium
YP_001307994.1	PFAM: protein of unknown function DUF633; KEGG: cpf:CPF_2262 hypothetical protein
YP_001307995.1	PFAM: protein of unknown function DUF34; KEGG: cpr:CPR_1972 conserved hypothetical protein TIGR00486
YP_001307997.1	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: cpf:CPF_2369 subtilase family protein
YP_001307998.1	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: cpe:CPE2112 hypothetical protein
YP_001307999.1	PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: tte:TTE2700 predicted glutamine amidotransferases
YP_001308000.1	SMART: transglutaminase domain protein; KEGG: swo:Swol_0169 hypothetical protein
YP_001308001.1	PFAM: ABC transporter; TOBE domain protein; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: cpr:CPR_2340 ABC transporter domain protein
YP_001308002.1	KEGG: cpf:CPF_2653 hypothetical protein
YP_001308003.1	PFAM: LacI family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; KEGG: cpe:CPE2340 probable transcriptional regulator
YP_001308004.1	amylomaltase; acts to release glucose from maltodextrins
YP_001308005.1	TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; KEGG: cpf:CPF_2646 glycogen/starch/alpha-glucan phosphorylase
YP_001308006.1	Involved in the metabolism of aromatic amino acids
YP_001308007.1	KEGG: ehi:53.t00013 ribulose-phosphate 3-epimerase
YP_001308008.1	PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; KEGG: cpr:CPR_1950 DNA topoisomerase
YP_001308009.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cpf:CPF_2925 oxidoreductase, short-chain dehydrogenase/reductase family
YP_001308010.1	KEGG: tde:TDE0553 hypothetical protein
YP_001308011.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cac:CAC0682 ammonium transporter (membrane protein nrgA)
YP_001308012.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: cac:CAC2547 possible membrane-associated methyl-accepting chemotaxis protein fused to HAMP domain
YP_001308013.1	PFAM: metallophosphoesterase; KEGG: cac:CAC2806 predicted phosphohydrolase, Icc family
YP_001308014.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: cno:NT01CX_0958 maltose transacetylase
YP_001308015.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: bat:BAS1867 methyl-accepting chemotaxis protein
YP_001308016.1	TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: baa:BA_4188 sodium:solute symporter family
YP_001308017.1	KEGG: cac:CAC0620 ABC transporter periplasmic protein
YP_001308018.1	PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: cac:CAC1956 site-specific recombinases, DNA invertase Pin homolog
YP_001308019.1	PFAM: protein of unknown function DUF955; KEGG: cpf:CPF_1607 hypothetical protein
YP_001308020.1	KEGG: lwe:lwe1074 hypothetical protein
YP_001308022.1	KEGG: ana:alr3663 unknown protein
YP_001308023.1	KEGG: smu:SMU.1772c hypothetical protein
YP_001308025.1	KEGG: dps:DP1566 hypothetical protein
YP_001308026.1	PFAM: helix-turn-helix domain protein; KEGG: cpf:CPF_1604 DNA-binding protein
YP_001308027.1	PFAM: helix-turn-helix domain protein
YP_001308028.1	KEGG: chy:CHY_1694  prophage LambdaCh01, transcriptional regulator
YP_001308032.1	KEGG: efa:EF2027 hypothetical protein
YP_001308033.1	KEGG: cno:NT01CX_2185 hypothetical protein
YP_001308040.1	PFAM: phage integrase family protein; KEGG: bat:BAS3811 prophage LambdaBa02, site-specific recombinase, phage integrase family
YP_001308042.1	KEGG: spm:spyM18_1304 hypothetical protein
YP_001308043.1	KEGG: bat:BAS0440 prophage LambdaBa04, GP54
YP_001308045.1	KEGG: bcz:BCZK3430 hypothetical protein
YP_001308046.1	PFAM: phage Terminase; KEGG: bat:BAS0443 prophage LambdaBa04, terminase, large subunit
YP_001308047.1	PFAM: phage portal protein; KEGG: bat:BAS3509 hypothetical protein
YP_001308048.1	TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35, phage prohead HK97; KEGG: cpf:CPF_1585 phage prohead protease, HK97 family
YP_001308049.1	TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: bat:BAS0446 prophage LambdaBa04, major capsid protein
YP_001308050.1	TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: bat:BAS0448 prophage LambdaBa04, DNA packaging protein
YP_001308051.1	TIGRFAM: phage head-tail adaptor
YP_001308054.1	KEGG: ctc:CTC02125 phage-like element pbsx protein XkdK
YP_001308055.1	KEGG: ctc:CTC02124 phage-like element pbsx protein XkdM
YP_001308057.1	KEGG: mac:MA3805 hypothetical protein
YP_001308058.1	KEGG: lin:lin0168 hypothetical protein
YP_001308059.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spn:SP_0377 choline binding protein C
YP_001308060.1	KEGG: ctc:CTC02117 phage-like element pbsx protein XkdQ
YP_001308062.1	KEGG: ctc:CTC02116 phage-like element pbsx protein XkdS
YP_001308063.1	PFAM: Baseplate J family protein; KEGG: ctc:CTC02115 phage-like element pbsx protein XkdT
YP_001308064.1	KEGG: ctc:CTC02114 hypothetical protein
YP_001308065.1	KEGG: ctc:CTC02112 phage-like element pbsx protein XkdT
YP_001308066.1	KEGG: gka:GK0543 hypothetical protein
YP_001308069.1	KEGG: cpr:CPR_C0053 hypothetical protein
YP_001308070.1	KEGG: cpf:CPF_0972 hypothetical protein
YP_001308071.1	PFAM: glycoside hydrolase, family 25; KEGG: cpf:CPF_0973 glycosyl hydrolase, family 25
YP_001308072.1	PFAM: helix-turn-helix domain protein
YP_001308073.1	KEGG: cno:NT01CX_1709 ABC transporter substrate-binding protein
YP_001308074.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC0619 nitrate ABC transporter ATP binding protein
YP_001308075.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cno:NT01CX_1706 ABC transporter permease, cysTW family
YP_001308076.1	PFAM: LrgA family protein; KEGG: ctc:CTC01825 conserved protein,  murein hydrolase exporter
YP_001308077.1	PFAM: LrgB family protein; KEGG: cpr:CPR_1948 LrgB-like family protein
YP_001308078.1	KEGG: pfa:MAL13P1.137 hypothetical malaria antigen
YP_001308079.1	KEGG: cpr:CPR_1341 D-galactose-binding periplasmic protein precursor
YP_001308080.1	PFAM: flavin reductase domain protein, FMN-binding; KEGG: cac:CAC2437 hypothetical protein
YP_001308081.1	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: ctc:CTC00981 D-alanyl-D-alanine carboxypeptidase
YP_001308082.1	PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: cpr:CPR_1207 glutamine amidotransferase, CobB/CobQ family
YP_001308083.1	PFAM: Mur ligase, middle domain protein; domain of unknown function DUF1727; KEGG: cpf:CPF_1392 UDP-N-acetylmuramyl tripeptide synthetase MurC-like protein
YP_001308084.1	PFAM: protein of unknown function DUF710; KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, Pfam: Nha1_C Rho_Binding ERM Prefoldin_2 WXG100 Vicilin_N TBPIP    Myosin_tail_1 Filament YscO Bacillus_HBL HAP1_N EzrA DUF948    Rab5-bind Laminin_I MpPF2 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH
YP_001308085.1	PFAM: peptidase U32; KEGG: cpr:CPR_1848 peptidase, U32 family
YP_001308086.1	MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange
YP_001308087.1	PFAM: protein of unknown function DUF523; KEGG: ctc:CTC02272 purine nucleoside phosphorylase
YP_001308088.1	KEGG: cac:CAC0750 hypothetical protein
YP_001308089.1	PFAM: glycoside hydrolase, family 46; KEGG: bsu:BG11923 chitosanase
YP_001308090.1	TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system, EIIC; KEGG: ppe:PEPE_0023 cellobiose-specific PTS system IIC component
YP_001308091.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: tte:TTE0335 Phosphotransferase system cellobiose-specific component IIB
YP_001308092.1	PFAM: phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit; KEGG: tte:TTE0336 Phosphotransferase system cellobiose-specific component IIA
YP_001308093.1	PFAM: sigma-54 factor, interaction domain-containing protein; PTS system fructose subfamily IIA component; PRD domain protein; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: tte:TTE0331 NtrC family transcriptional regulator, ATPase domain
YP_001308094.1	PFAM: sigma-54 factor, interaction domain-containing protein; PRD domain protein; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: stm:STM4534  transcriptional regulator
YP_001308095.1	PFAM: PTS system fructose subfamily IIA component; KEGG: stm:STM4535  PTS system, mannose-specific II component
YP_001308096.1	PFAM: PTS system sorbose subfamily IIB component; KEGG: stm:STM4536  PTS system, mannose-specific II component
YP_001308097.1	PFAM: phosphotransferase system PTS, sorbose-specific IIC subunit; KEGG: lmf:LMOf2365_2024 PTS system, IIC component
YP_001308098.1	PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: fnu:FN0629 PTS system, IID component
YP_001308099.1	PFAM: sugar isomerase (SIS); KEGG: fnu:FN0627 glucosamine--fructose-6-phosphate aminotransferase [isomerizing]
YP_001308100.1	PFAM: PfkB domain protein; KEGG: aau:AAur_0441  sugar kinase
YP_001308101.1	PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: bha:BH3372 hypothetical protein
YP_001308102.1	PFAM: sigma-54 factor, interaction domain-containing protein; ATPase AAA, central domain protein; PRD domain protein; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: tte:TTE0191 AAA superfamily ATPase with N-terminal receiver domain
YP_001308103.1	PFAM: PTS system fructose subfamily IIA component; KEGG: bcl:ABC4070 PTS system, mannose-specific enzyme II, A component
YP_001308104.1	PFAM: PTS system sorbose subfamily IIB component; KEGG: bcl:ABC4071 PTS system, mannose-specific enzyme II, B component
YP_001308105.1	PFAM: phosphotransferase system PTS, sorbose-specific IIC subunit; KEGG: stm:STM0575  PTS system, mannose-specific II component
YP_001308106.1	PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: bcl:ABC4073 PTS system, mannose-specific enzyme II, D component
YP_001308107.1	PFAM: sugar isomerase (SIS); KEGG: stm:STM0573  inner membrane protein
YP_001308108.1	PFAM: polysaccharide biosynthesis protein; KEGG: cpf:CPF_0604 polysaccharide biosynthesis protein
YP_001308109.1	PFAM: helix-turn-helix domain protein; KEGG: cac:CAC0465 predicted transcriptional regulator, DicA/HipB/AnsR family
YP_001308110.1	PFAM: peptidase M56, BlaR1; KEGG: tte:TTE1079 beta-lactamase regulatory protein 1
YP_001308111.1	PFAM: Penicillinase repressor; KEGG: bcl:ABC0266 methicillin resistance regulatory protein MecI
YP_001308112.1	PFAM: SNF2-related protein; helicase domain protein; type III restriction protein, res subunit; zinc finger, SWIM domain protein; SNF2 helicase associated domain protein; SMART: DEAD-like helicases-like; KEGG: cac:CAC3441 DNA/RNA helicase, SNF2
YP_001308113.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: lwe:lwe2648 phosphosugar-binding transcriptional regulator, RpiR family
YP_001308114.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: lsl:LSL_1476 hydrolase, HAD superfamily
YP_001308115.1	TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: oih:OB0554 histidinol phosphatase
YP_001308116.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bcz:BCZK2535 phosphinothricin N-acetyltransferase
YP_001308117.1	PFAM: major facilitator superfamily MFS_1; KEGG: btl:BALH_2365 macrolide efflux protein
YP_001308118.1	PFAM: major facilitator superfamily MFS_1; KEGG: dsy:DSY0578 hypothetical protein
YP_001308119.1	KEGG: cpr:CPR_1191 hypothetical protein
YP_001308120.1	TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: cpr:CPR_0204 nuclease SbcCD, D subunit
YP_001308121.1	PFAM: SMC domain protein; KEGG: cac:CAC2736 ATPase involved in DNA repair
YP_001308122.1	TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: cpf:CPF_2128 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
YP_001308123.1	PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cpr:CPR_1841 phosphomannomutase
YP_001308124.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cno:NT01CX_1777 TPR repeats containing protein
YP_001308125.1	TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: cno:NT01CX_1798 teichoic acid biosynthesis protein A
YP_001308126.1	TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: cno:NT01CX_1790 integral membrane protein MviN
YP_001308127.1	KEGG: cpe:CPE1869 hypothetical protein
YP_001308128.1	PFAM: glycosyl transferase, group 1; KEGG: bth:BT_2936  glycosyltransferase
YP_001308129.1	PFAM: O-antigen polymerase; KEGG: cac:CAC2318 membrane protein of ExoQ family, involved in exopolysaccharide production
YP_001308130.1	PFAM: Formiminotransferase-cyclodeaminase; KEGG: cno:NT01CX_1802 formiminotransferase- cyclodeaminase/formiminotetrahydrofolate cyclodeaminase
YP_001308133.1	TIGRFAM: Delta-lactam-biosynthetic de-N-acetylase; PFAM: polysaccharide deacetylase; KEGG: cpr:CPR_1836 polysaccharide deacetylase (nodulation protein NodB)
YP_001308134.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_001308135.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ctc:CTC00543 hypothetical protein
YP_001308136.1	TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase, type I; KEGG: cpr:CPR_1205 mannose-6-phosphate isomerase, class I
YP_001308137.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_001308138.1	PFAM: phosphofructokinase; KEGG: cpe:CPE1185 6-phosphofructokinase
YP_001308139.1	KEGG: cpr:CPR_1202 beta-lactamase
YP_001308140.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_001308141.1	involved in the allosteric regulation of aspartate carbamoyltransferase
YP_001308142.1	TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: cpr:CPR_1200 dihydroorotase, multifunctional complex type
YP_001308143.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_001308144.1	responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+)
YP_001308145.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits
YP_001308146.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001308147.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_001308148.1	KEGG: cpr:CPR_0627 hypothetical protein
YP_001308149.1	TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: cpr:CPR_1169 formate acetyltransferase
YP_001308150.1	TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein; KEGG: cpr:CPR_1170 pyruvate formate-lyase activating enzyme
YP_001308151.1	TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: cpr:CPR_1169 formate acetyltransferase
YP_001308152.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_2164 rubredoxin-type Fe(Cys)4 protein
YP_001308153.1	PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cpf:CPF_1920  DNA polymerase III, epsilon subunit
YP_001308154.1	TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: ctc:CTC01998 L-lactate dehydrogenase
YP_001308155.1	TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein; KEGG: cno:NT01CX_0898 BirA bifunctional protein
YP_001308156.1	KEGG: cpf:CPF_2255 hypothetical protein
YP_001308157.1	KEGG: ctc:CTC00792 hypothetical protein
YP_001308158.1	PFAM: peptidase M50; KEGG: ctc:CTC00793 protein with metal dependent protease domain
YP_001308159.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_001308160.1	PFAM: protein of unknown function UPF0118; KEGG: ctc:CTC01775 permease
YP_001308161.1	PFAM: nitroreductase; KEGG: cpr:CPR_0997 nitroreductase
YP_001308162.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: ctc:CTC00969 phosphoserine phosphatase
YP_001308163.1	KEGG: cno:NT01CX_1593 hypothetical protein
YP_001308164.1	PFAM: beta-lactamase domain protein; KEGG: cpe:CPE1657 probable late competence protein
YP_001308165.1	KEGG: cpe:CPE1656 hypothetical protein
YP_001308166.1	PFAM: protein of unknown function DUF1113; KEGG: cpf:CPF_1398 hypothetical protein
YP_001308167.1	PFAM: protein of unknown function DUF378; KEGG: cno:NT01CX_0131 hypothetical protein
YP_001308168.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: cpr:CPR_1625 transcriptional regulator, AsnC family
YP_001308169.1	KEGG: cpf:CPF_1905 hypothetical protein
YP_001308170.1	KEGG: cpf:CPF_1904 hypothetical protein
YP_001308171.1	KEGG: tte:TTE1187 carbonic anhydrase/acetyltransferase, isoleucine patch superfamily
YP_001308172.1	SMART: RNA binding S1 domain protein; KEGG: cpe:CPE1650 hypothetical protein
YP_001308173.1	PFAM: GerA spore germination protein; KEGG: cpe:CPE0984 stage V sporulation protein AF
YP_001308174.1	TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: btl:BALH_1017 asparagine synthetase, glutamine-hydrolyzing
YP_001308175.1	KEGG: cpr:CPR_0073 hypothetical protein
YP_001308176.1	TIGRFAM: ATPase P; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: cpf:CPF_1412 ATPase P
YP_001308177.1	PFAM: protein of unknown function DUF327; KEGG: ctc:CTC00667 hypothetical protein
YP_001308178.1	KEGG: cpe:CPE1487  sulfonate/nitrate transport system substrate-binding protein
YP_001308179.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_1737 ABC transporter permease
YP_001308180.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpr:CPR_1464 nitrate ABC transporter ATP binding protein
YP_001308181.1	PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: ATPase AAA; KEGG: cpr:CPR_2282 ABC transporter (ATP binding protein)-like protein lin0829
YP_001308183.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_001308184.1	TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; KEGG: cno:NT01CX_0103 glutamine-dependent NAD+ synthetase
YP_001308185.1	PFAM: protein of unknown function DUF107; KEGG: cac:CAC1051 uncharacterized conserved protein (possible membrane)
YP_001308186.1	PFAM: band 7 protein; KEGG: cno:NT01CX_0101 SPFH domain/band 7 family protein
YP_001308187.1	KEGG: bcz:BCZK0960 EcsC-like protein
YP_001308188.1	KEGG: ddi:DDBDRAFT_0202921 hypothetical protein
YP_001308189.1	PFAM: extracellular solute-binding protein, family 3; KEGG: cpe:CPE1324 probable amino acid ABC transporter
YP_001308190.1	TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_1532 amino acid ABC transporter permease, His/Glu/Gln/Arg/opine family
YP_001308191.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpe:CPE1326 probable amino acid ABC transporter
YP_001308192.1	KEGG: cno:NT01CX_0353 hypothetical protein
YP_001308193.1	TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; KEGG: cpf:CPF_0671 phosphoribosylformylglycinamidine synthase
YP_001308194.1	TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: cpr:CPR_0670 phosphoribosylaminoimidazole carboxylase, catalytic subunit
YP_001308195.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_001308196.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_001308197.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_001308198.1	TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: cpr:CPR_0674 phosphoribosylglycinamide formyltransferase
YP_001308199.1	involved in de novo purine biosynthesis
YP_001308200.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_001308201.1	KEGG: ddi:DDBDRAFT_0218157 hypothetical protein
YP_001308202.1	PFAM: Penicillinase repressor; KEGG: tte:TTE1078 predicted transcriptional regulator
YP_001308203.1	PFAM: peptidase M56, BlaR1; KEGG: dsy:DSY3484 hypothetical protein
YP_001308204.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cno:NT01CX_2328 conserved protein, tetratricopeptide repeat family protein
YP_001308205.1	KEGG: cpf:CPF_1041 hypothetical protein
YP_001308207.1	PFAM: regulatory protein, MarR; KEGG: ctc:CTC00126 transcriptional regulator, marR family
YP_001308208.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: cac:CAC3578 3-oxoacyl-[acyl-carrier-protein] synthase III
YP_001308209.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: cac:CAC3576 dioxygenase related to 2-nitropropane dioxygenase
YP_001308210.1	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cpf:CPF_1325 malonyl CoA-acyl carrier protein transacylase
YP_001308211.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001308212.1	PFAM: Beta-ketoacyl synthase-like; KEGG: cpr:CPR_1139 3-oxoacyl-[acyl-carrier-protein] synthase II
YP_001308213.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cpf:CPF_1328 acetyl-CoA carboxylase, biotin carboxyl carrier protein
YP_001308214.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_001308215.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: cpe:CPE1074 acetyl-CoA carboxylase
YP_001308216.1	TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: cpr:CPR_1143 acetyl-CoA carboxylase, carboxyl transferase, beta subunit
YP_001308217.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_001308218.1	PFAM: HutP; KEGG: ctc:CTC01329 hypothetical protein
YP_001308219.1	PFAM: protein of unknown function DUF534; KEGG: swo:Swol_0325 hypothetical protein
YP_001308220.1	PFAM: inner-membrane translocator; KEGG: fnu:FN2080 ABC transporter integral membrane protein
YP_001308221.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: fnu:FN2079 ABC transporter ATP-binding protein
YP_001308222.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_1737 autolysin/N-acetylmuramoyl-L-alanine amidase
YP_001308223.1	PFAM: Ig domain protein, group 2 domain protein; KEGG: cth:Cthe_0056 Ig-like, group 2
YP_001308224.1	KEGG: cpe:CPE1341 probable galactoside ABC transporter
YP_001308225.1	KEGG: sce:YDL035C Plasma membrane G protein coupled receptor (GPCR) that interacts with the heterotrimeric G protein alpha subunit, Gpa2p, and with Plc1p; sensor that integrates nutritional signals with the modulation of cell fate via PKA and cAMP synthesis
YP_001308226.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: aba:Acid345_4523 diguanylate cyclase with GAF sensor
YP_001308227.1	PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: cno:NT01CX_1554 alginate O-acetylation protein
YP_001308228.1	KEGG: fnu:FN1671 ABC transporter ATP-binding protein
YP_001308229.1	PFAM: AMP-dependent synthetase and ligase; KEGG: cff:CFF8240_1466 amino acid adenylation domain protein
YP_001308231.1	PFAM: VanZ family protein; KEGG: cac:CAC3074 hypothetical protein
YP_001308232.1	KEGG: dsy:DSY3434 hypothetical protein
YP_001308234.1	PFAM: ATPase AAA, central domain protein; SMART: ATPase AAA; KEGG: cpr:CPR_1757 ATPase, AAA family
YP_001308235.1	TIGRFAM:  transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cpr:CPR_1756 uncharacterized conserved protein of YjeB/RRF2 family
YP_001308236.1	PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cpr:CPR_1755 cysteine desulfurase
YP_001308237.1	PFAM: nitrogen-fixing NifU domain protein; KEGG: cpr:CPR_1754 NifU protein
YP_001308238.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_001308239.1	KEGG: ddi:DDBDRAFT_0218157 hypothetical protein
YP_001308240.1	PFAM: PRC-barrel domain protein; KEGG: cpr:CPR_1752 PRC-barrel domain protein
YP_001308241.1	PFAM: protein of unknown function UPF0118; KEGG: cpe:CPE1781 hypothetical protein
YP_001308242.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001308243.1	PFAM: protein of unknown function DUF965; KEGG: cpr:CPR_1749 hypothetical protein
YP_001308244.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_001308245.1	PFAM: protein of unknown function DUF1292; KEGG: cno:NT01CX_2277 hypothetical protein
YP_001308246.1	PFAM: ferric-uptake regulator; KEGG: cpf:CPF_2029 transcriptional regulator, Fur family
YP_001308247.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: cpf:CPF_2028 RNA-metabolising metallo-beta-lactamase family protein
YP_001308248.1	TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: cpe:CPE1774 probable GTP-binding protein
YP_001308249.1	PFAM: aminodeoxychorismate lyase; KEGG: cpe:CPE1773 conserved hypothetical protein
YP_001308250.1	PFAM: O-methyltransferase, family 3; KEGG: cpf:CPF_2025 O-methyltransferase family protein
YP_001308251.1	PFAM: peptidase U32; KEGG: cpf:CPF_2024 peptidase, U32 family
YP_001308252.1	PFAM: penicillin-binding protein, transpeptidase; KEGG: cpf:CPF_2022  penicillin-binding protein
YP_001308253.1	sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment
YP_001308254.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: ATPase AAA; KEGG: ctc:CTC01119 pili retraction protein pilT
YP_001308255.1	PFAM: cell division protein FtsA; KEGG: cpf:CPF_2019 cell division protein FtsA
YP_001308256.1	TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: cpf:CPF_2018 cell division protein FtsZ
YP_001308257.1	PFAM: peptidase U4, sporulation factor SpoIIGA; KEGG: cpr:CPR_1734 sporulation factor SpoIIGA
YP_001308258.1	sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation
YP_001308259.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin
YP_001308260.1	TIGRFAM: Sporulation protein YlmC/YmxH; PFAM: PRC-barrel domain protein; KEGG: cpr:CPR_1731 PRC-barrel domain
YP_001308261.1	PFAM: ATP-cone domain protein; KEGG: cpr:CPR_1730 transcriptional regulator, NrdR family
YP_001308262.1	PFAM: protein of unknown function DUF152; KEGG: cno:NT01CX_2256 hypothetical protein
YP_001308263.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC01130 transcriptional regulatory protein
YP_001308264.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cac:CAC1701 sensory histidine kinase (with HAMP and PAS domains)
YP_001308265.1	TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: cac:CAC1705 periplasmic phosphate-binding protein
YP_001308266.1	TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC1706 phosphate permease
YP_001308267.1	TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC1707 permease component of ATP-dependent phosphate uptake system
YP_001308268.1	TIGRFAM: phosphate ABC transporter ATPase subunit; PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC1708 ATPase component of ABC-type phosphate transport system
YP_001308269.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: cac:CAC1709 phosphate uptake regulator
YP_001308270.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: cac:CAC1709 phosphate uptake regulator
YP_001308271.1	PFAM: protein of unknown function DUF512; KEGG: cpf:CPF_2009 hypothetical protein
YP_001308272.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_001308273.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_001308274.1	TIGRFAM: Sporulation stage IV, protein A; KEGG: cpr:CPR_1724 stage IV sporulation protein A
YP_001308276.1	KEGG: lma:LmjF15.0440 hypothetical protein, unknown function
YP_001308277.1	PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: cpf:CPF_2003 conserved hypothetical protein TIGR00255
YP_001308278.1	PFAM: protein of unknown function DUF370; KEGG: cno:NT01CX_2250 hypothetical UPF0296 protein
YP_001308279.1	Essential for recycling GMP and indirectly, cGMP
YP_001308280.1	Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_001308281.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_001308282.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_001308283.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_001308284.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_001308285.1	PFAM: peptidase, membrane zinc metallopeptidase, KEGG: cno:NT01CX_2243 hypothetical protein
YP_001308286.1	TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: cpr:CPR_1712 sun protein
YP_001308287.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_001308288.1	PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: cpf:CPF_1992 protein phosphatase 2C family protein
YP_001308289.1	PFAM: protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: cpe:CPE1738 pobable serine/threonine protein kinase
YP_001308290.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_001308291.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_001308292.1	TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: cac:CAC1731 predicted nucleotide-binding protein, YLOS B.subtilis ortholog
YP_001308293.1	required for 70S ribosome assembly
YP_001308294.1	PFAM: protein of unknown function DUF322; KEGG: cpr:CPR_1704 hypothetical protein
YP_001308295.1	PFAM: Dak phosphatase; KEGG: cpe:CPE1732 conserved hypothetical protein
YP_001308296.1	catalyzes branch migration in Holliday junction intermediates
YP_001308297.1	TIGRFAM:  methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: cpf:CPF_1983  methyltransferase
YP_001308298.1	TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase; KEGG: cno:NT01CX_2230 pantetheine-phosphate adenylyltransferase
YP_001308299.1	KEGG: cpf:CPF_1980 hypothetical protein
YP_001308300.1	TIGRFAM: Sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein; KEGG: cpr:CPR_1699 uncharacterized membrane protein
YP_001308301.1	PFAM: protein of unknown function DUF795; KEGG: cno:NT01CX_2226 hypothetical protein
YP_001308302.1	in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta
YP_001308303.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_001308304.1	PFAM: protein of unknown function DUF177; KEGG: cpf:CPF_1976 hypothetical protein
YP_001308305.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_001308306.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_001308307.1	carries the fatty acid chain in fatty acid biosynthesis
YP_001308308.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_001308309.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cpr:CPR_1689 radical SAM domain protein
YP_001308310.1	TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: cno:NT01CX_2216 chromosome segregation protein SMC
YP_001308311.1	TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: ATPase AAA; KEGG: cpe:CPE1715 signal recognition particle protein
YP_001308312.1	PFAM:  helix-turn-helix protein, YlxM/p13 family protein; KEGG: cpf:CPF_1968 DNA-binding protein
YP_001308313.1	TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: ATPase AAA; KEGG: cpr:CPR_1685 signal recognition particle protein
YP_001308314.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_001308315.1	KEGG: cac:CAC1756 predicted nucleic acid binding protein, containing KH domain
YP_001308316.1	Essential for efficient processing of 16S rRNA
YP_001308317.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_001308318.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_001308319.1	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc)
YP_001308320.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_001308321.1	PFAM: protein of unknown function UPF0102; KEGG: cpe:CPE1705 predicted endonuclease
YP_001308322.1	TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: cpf:CPF_1958 Mg chelatase-like protein
YP_001308323.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: cno:NT01CX_2152 DNA uptake protein
YP_001308324.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_001308325.1	CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
YP_001308326.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_001308327.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_001308328.1	Catalyzes the phosphorylation of UMP to UDP
YP_001308329.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_001308330.1	TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: ctc:CTC01265 undecaprenyl pyrophosphate synthetase
YP_001308331.1	PFAM: phosphatidate cytidylyltransferase; KEGG: cpr:CPR_1667 phosphatidate cytidylyltransferase
YP_001308332.1	PFAM: protein of unknown function UPF0118; KEGG: cac:CAC1794 predicted permease
YP_001308333.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_001308334.1	TIGRFAM:  membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: cpe:CPE1693 hypothetical zinc metalloprotease
YP_001308335.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_001308336.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_001308337.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_001308338.1	PFAM: protein of unknown function DUF448; KEGG: cpr:CPR_1660 hypothetical protein
YP_001308339.1	PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: cpr:CPR_1659 ribosomal protein L7Ae superfamily
YP_001308340.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_001308341.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_001308342.1	PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: cpr:CPR_1656 DHH subfamily 1 protein
YP_001308343.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_001308344.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_001308345.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_001308346.1	PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: cpe:CPE1680 polyribonucleotide nucleotidyltransferase
YP_001308347.1	PFAM: peptidase M16 domain protein; KEGG: ctc:CTC01281 zinc protease
YP_001308348.1	TIGRFAM: Sporulation protein YlmC/YmxH; PFAM: PRC-barrel domain protein; KEGG: cpr:CPR_1651 PRC-barrel domain protein
YP_001308349.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive
YP_001308350.1	PFAM: peptidase S14, ClpP; KEGG: cpf:CPF_1931 clp protease
YP_001308351.1	PFAM: cell divisionFtsK/SpoIIIE; KEGG: cpf:CPF_1930 DNA translocase FtsK
YP_001308352.1	KEGG: cpe:CPE1675 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB
YP_001308353.1	TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cpf:CPF_1928 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
YP_001308354.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001308355.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_001308356.1	PFAM: Stage V sporulation protein S; KEGG: cpr:CPR_1643 stage V sporulation protein S
YP_001308357.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: cpr:CPR_1641 phosphocarrier protein (HPr)
YP_001308358.1	KEGG: cth:Cthe_2074 protein of unknown function DUF378
YP_001308359.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_001308360.1	KEGG: ctc:CTC01474 hypothetical protein
YP_001308361.1	KEGG: dsy:DSY2753 hypothetical protein
YP_001308362.1	TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: cno:NT01CX_0715 riboflavin biosynthesis protein RibD
YP_001308363.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_001308364.1	PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: cpr:CPR_0532 riboflavin biosynthesis protein RibA
YP_001308365.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_001308366.1	PFAM: LacI family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; KEGG: gka:GK2147 transcriptional regulator
YP_001308367.1	PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH2726 lactose transport system substrate-binding protein
YP_001308368.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2725 lactose transport system permease
YP_001308369.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2724 lactose transport system permease
YP_001308370.1	PFAM: Glycoside hydrolase, family 42, N-terminal domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase C-terminal domain protein; KEGG: bcl:ABC3516 beta-galactosidase
YP_001308371.1	TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; KEGG: gfo:orf2995 ketopantoate reductase PanE/ApbA
YP_001308372.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase internal region; KEGG: bha:BH2727 two-component sensor histidine kinase
YP_001308373.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: bha:BH2728 two-component response regulator
YP_001308374.1	PFAM: glycoside hydrolase, family 42, domain 5, loop region; glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; KEGG: lsl:LSL_0376 beta-galactosidase
YP_001308375.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_001308376.1	PFAM: protein of unknown function DUF479; KEGG: gfo:orf2038 protein containing DUF479
YP_001308377.1	TIGRFAM: oligopeptide transporters, OPT superfamily; oligopeptide transporter OPT family; PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: cpr:CPR_1276 oligopeptide transporter OPT family
YP_001308378.1	KEGG: cpe:CPE1277 hypothetical protein
YP_001308379.1	KEGG: dsy:DSY3881 hypothetical protein
YP_001308380.1	PFAM: NLP/P60 protein; KEGG: cpf:CPF_0274 SagA protein
YP_001308381.1	KEGG: cpf:CPF_0039 hypothetical protein
YP_001308382.1	PFAM: K+ potassium transporter; KEGG: cpf:CPF_1235 potassium transporter
YP_001308383.1	KEGG: cpf:CPF_1225 hypothetical protein
YP_001308384.1	PFAM: AMMECR1 domain protein; Extradiol ring-cleavage dioxygenase, class III protein, subunit B; KEGG: cac:CAC1420 protein with a fusion of two uncharacterized domains, typical for archaea
YP_001308385.1	KEGG: mja:MJ1433 hypothetical protein
YP_001308386.1	TIGRFAM: thioesterase domain, KEGG: ana:all7182 hypothetical protein
YP_001308387.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ctc:CTC02185 glyoxalase I
YP_001308389.1	PFAM: protein of unknown function DUF326; KEGG: bca:BCE_A0193 hypothetical protein
YP_001308390.1	PFAM: regulatory protein, TetR; KEGG: cac:CAC0457 transcriptional regulator, AcrR family
YP_001308391.1	KEGG: cac:CAC0456 ATP-dependent protease (lonA); TIGRFAM: ATP-dependent protease La; PFAM: ATPase AAA, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: peptidase S16, lon domain protein; ATPase AAA
YP_001308392.1	KEGG: bld:BLi01973 YjlA
YP_001308393.1	PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: cno:NT01CX_0005 DNA-binding protein
YP_001308394.1	TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cpr:CPR_1234 precorrin-3B C17-methyltransferase
YP_001308395.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_001308396.1	KEGG: cph:Cpha266_1405 hypothetical protein
YP_001308397.1	PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: ctc:CTC00438 conserved phage protein
YP_001308398.1	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole
YP_001308399.1	PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cth:Cthe_0965 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
YP_001308400.1	KEGG: cpr:CPR_1109 hypothetical protein
YP_001308401.1	PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cpr:CPR_1110 cobalamin 5'-phosphate synthase
YP_001308402.1	KEGG: cpr:CPR_1111 cobalamin biosynthesis protein CobU, , truncation
YP_001308403.1	PFAM: Phosphoglycerate mutase; KEGG: cpf:CPF_1293 phosphoglycerate mutase family protein
YP_001308404.1	CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
YP_001308405.1	cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase
YP_001308406.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_2017 choline binding protein A
YP_001308407.1	TIGRFAM:  ATP binding protein; PFAM: protein of unknown function DUF71, ATP-binding region; KEGG: cpr:CPR_1118 hypothetical protein
YP_001308408.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_001308410.1	TIGRFAM: Sporulation protein YtaF; KEGG: cno:NT01CX_0960 hypothetical protein
YP_001308411.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: cpf:CPF_0594 HAD-superfamily hydrolase, subfamily IIB
YP_001308412.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cac:CAC0277 HD-GYP hydrolase domain containing protein
YP_001308413.1	TIGRFAM: adenine deaminase; PFAM: amidohydrolase; KEGG: gka:GK2098 adenine deaminase
YP_001308414.1	KEGG: btl:BALH_3045 hypothetical protein
YP_001308415.1	catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis
YP_001308416.1	KEGG: ctc:CTC01237  sodium-glucose/galactose cotransporter
YP_001308417.1	PFAM: protein of unknown function DUF1294; KEGG: cpr:CPR_0517 hypothetical protein
YP_001308418.1	PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: cpe:CPE1558 probable di-trans, poly-cis-decaprenylcistransferase
YP_001308419.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_001308420.1	catalyzes the formation of siroheme from precorrin-2
YP_001308421.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_001308422.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: cpr:CPR_1421 uroporphyrinogen-III methyltransferase/synthase
YP_001308423.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_001308424.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_001308425.1	PFAM: protein of unknown function DUF208; KEGG: cac:CAC1577 ncharacterized conserved protein
YP_001308426.1	KEGG: cpr:CPR_2293 hypothetical protein
YP_001308427.1	KEGG: ctc:CTC01505 lipase
YP_001308428.1	KEGG: cpr:CPR_1374 hypothetical protein
YP_001308429.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_001308430.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_001308431.1	KEGG: cpr:CPR_1404 ACT domain protein
YP_001308435.1	KEGG: ljo:LJ1035 hypothetical protein
YP_001308436.1	KEGG: cpf:CPF_1488 hypothetical protein
YP_001308437.1	KEGG: cth:Cthe_2522 membrane associated protein
YP_001308438.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: ctc:CTC01788 RNA polymerase sigma-70 factor
YP_001308439.1	KEGG: cth:Cthe_2522 membrane associated protein
YP_001308440.1	KEGG: ddi:DDB_0220019 C2 domain-containing protein
YP_001308441.1	KEGG: tte:TTE0419 lysophospholipase
YP_001308442.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_001308443.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: cac:CAC2818 AraC-type DNA-binding domain-containing protein, transcriptional regulator
YP_001308444.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_001308445.1	PFAM: sodium:dicarboxylate symporter; KEGG: bcl:ABC1665 H+/sodium:glutamate symporter
YP_001308446.1	PFAM: RelA/SpoT domain protein; KEGG: cpr:CPR_1575 GTP pyrophosphokinase-like protein
YP_001308447.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: cpe:CPE0393 3-hydroxyisobutyrate dehydrogenase
YP_001308448.1	PFAM: aminotransferase, class V; KEGG: cpf:CPF_1667 aminotransferase, class V
YP_001308449.1	Required for the synthesis of the thiazole moiety
YP_001308450.1	PFAM: protein of unknown function DUF1275; KEGG: mac:MA1282 hypothetical protein
YP_001308451.1	PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: cno:NT01CX_1060 histidyl-tRNA synthetase
YP_001308452.1	TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic region; KEGG: cno:NT01CX_1061 ATP phosphoribosyltransferase
YP_001308453.1	PFAM: histidinol dehydrogenase; KEGG: cac:CAC0937 histidinol dehydrogenase
YP_001308454.1	PFAM: aminotransferase, class I and II; KEGG: cno:NT01CX_1063 histidinol-phosphate aminotransferase
YP_001308455.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_001308456.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_001308457.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_001308458.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_001308459.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_001308460.1	PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: cac:CAC0943 phosphoribosyl-ATP pyrophosphohydrolase
YP_001308461.1	KEGG: ctc:CTC02377 hypothetical protein
YP_001308462.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_001308463.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_001308464.1	binds and unfolds substrates as part of the ClpXP protease
YP_001308465.1	KEGG: cpr:CPR_1383 ATP-dependent protease LonB; TIGRFAM: Sporulation protease LonB; PFAM: magnesium chelatase, ChlI subunit; ATPase AAA, central domain protein; peptidase S16, lon domain protein; SMART: ATPase AAA
YP_001308466.1	KEGG: ctc:CTC02372 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; ATPase AAA, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA
YP_001308467.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_001308468.1	KEGG: cpf:CPF_1642 hypothetical protein
YP_001308469.1	KEGG: cpe:CPE1386 hypothetical protein
YP_001308470.1	KEGG: cpr:CPR_1378 hypothetical protein
YP_001308471.1	KEGG: cpe:CPE1384 hypothetical protein
YP_001308472.1	PFAM: ferric-uptake regulator; KEGG: cno:NT01CX_0363 transcriptional regulator, Fur family
YP_001308473.1	KEGG: cpr:CPR_1229 hypothetical protein
YP_001308474.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_001308475.1	PFAM: UvrD/REP helicase; KEGG: cpr:CPR_1226 ATP-dependent DNA helicase PcrA
YP_001308476.1	PFAM: phage integrase family protein; KEGG: cpe:CPE1095 probable integrase/recombinase
YP_001308477.1	PFAM: helix-turn-helix domain protein
YP_001308478.1	KEGG: ddi:DDBDRAFT_0190888 hypothetical protein
YP_001308479.1	PFAM: protein of unknown function DUF1508; KEGG: chu:CHU_2608 hypothetical protein
YP_001308482.1	KEGG: mla:Mlab_1036 hypothetical protein
YP_001308487.1	KEGG: cac:CAC1162 hypothetical protein, CF-11 family
YP_001308489.1	KEGG: bsu:BG13626 hypothetical protein
YP_001308493.1	KEGG: sha:SH2354 hypothetical protein
YP_001308494.1	PFAM: helix-turn-helix domain protein
YP_001308496.1	KEGG: swo:Swol_1310 hypothetical protein
YP_001308504.1	TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: bsu:BG13596 similar to lytic transglycosylase
YP_001308506.1	PFAM: phage portal protein, SPP1; KEGG: swo:Swol_1309 hypothetical protein
YP_001308509.1	PFAM: phage integrase family protein; KEGG: cac:CAC2813 predicted integrase of XerC/XerD family
YP_001308511.1	PFAM: Ig domain protein, group 2 domain protein; KEGG: swo:Swol_1304 hypothetical protein
YP_001308512.1	KEGG: ctc:pE88_04 UviB homologous protein
YP_001308515.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: msu:MS0063 periplasmic sugar-binding proteins
YP_001308516.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: cpf:CPF_2344 DNA-binding response regulator, AraC family
YP_001308517.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase internal region; KEGG: ctc:CTC01848 two-component sensor kinase YesM
YP_001308518.1	uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function
YP_001308520.1	KEGG: cno:NT01CX_1629 cell division protein FtsA
YP_001308521.1	TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: cpr:CPR_1225 amidohydrolase family protein
YP_001308522.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cpf:CPF_1414 pseudouridine synthase, RluA family
YP_001308523.1	PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: cpf:CPF_1413 stage V sporulation protein B
YP_001308524.1	TIGRFAM: Sporulation stage V, protein B; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: cpe:CPE1648 stage V sporulation protein B
YP_001308525.1	PFAM: chemotaxis sensory transducer; KEGG: cac:CAC1601 methyl-accepting chemotaxis-like protein (chemotaxis sensory transducer)
YP_001308526.1	PFAM: chemotaxis sensory transducer; KEGG: cac:CAC1601 methyl-accepting chemotaxis-like protein (chemotaxis sensory transducer)
YP_001308527.1	KEGG: cno:NT01CX_1637 predicted membrane protein
YP_001308528.1	KEGG: ctc:CTC00991 hypothetical protein
YP_001308529.1	PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cpf:CPF_1897 radical SAM domain protein
YP_001308530.1	PFAM: regulatory protein, MarR; KEGG: cac:CAC3406 transcriptional regulator, MarR/EmrR family
YP_001308531.1	PFAM: BAAT/Acyl-CoA thioester hydrolase-like; KEGG: cac:CAC3407 acyl-CoA thioesterase 1
YP_001308532.1	PFAM: transposase IS3/IS911 family protein; KEGG: san:gbs0621 hypothetical protein
YP_001308533.1	PFAM: Integrase, catalytic region; KEGG: lca:LSEI_1907 transposase
YP_001308534.1	PFAM: glycosyl transferase, family 4; KEGG: cpf:CPF_1886 glycosyl transferase, group 4 family protein
YP_001308535.1	PFAM: Vitamin B12 dependent methionine synthase, activation region; KEGG: ctc:CTC01807  5-methyltetrahydrofolate--homocysteine methyltransferase
YP_001308536.1	PFAM: dihydropteroate synthase, DHPS; homocysteine S-methyltransferase; Methionine synthase, B12-binding module, cap domain protein; cobalamin B12-binding domain protein; KEGG: cno:NT01CX_2109 5-methyltetrahydrofolate--homocysteine methyltransferase
YP_001308537.1	KEGG: cac:CAC1330 metal-dependent hydrolase of the beta-lactamase superfamily, possible sulfatase
YP_001308538.1	KEGG: cno:NT01CX_1651 hypothetical protein
YP_001308539.1	PFAM: protein of unknown function DUF1292; KEGG: cpr:CPR_1590 hypothetical protein
YP_001308540.1	KEGG: cpr:CPR_1589 hypothetical protein
YP_001308541.1	KEGG: cpr:CPR_1073 hypothetical protein
YP_001308542.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_001308543.1	catalyzes the removal of amino acids from the N termini of peptides
YP_001308544.1	PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cpr:CPR_1092 predicted metal-dependent phosphoesterase (PHP family)
YP_001308545.1	KEGG: cac:CAC1093 hypothetical secreted protein
YP_001308546.1	PFAM: Pyruvate kinase, barrel; KEGG: cpe:CPE1025 probable pyruvate kinase
YP_001308547.1	KEGG: cno:NT01CX_1375 predicted membrane protein
YP_001308548.1	PFAM: heat shock protein DnaJ domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: cno:NT01CX_1376 molecular chaperone, DnaJ family (contain C-term. Zn finger domain)
YP_001308549.1	KEGG: cac:CAC0649 uncharacterized protein, homolog of Thermotoga maritima (4982386)
YP_001308550.1	PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cpr:CPR_0682 rubredoxin/rubrerythrin
YP_001308551.1	PFAM: Appr-1-p processing domain protein; KEGG: cth:Cthe_2058 Appr-1-p processing protein
YP_001308553.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cac:CAC0847 probable cation efflux pump (multidrug resistance protein)
YP_001308554.1	KEGG: ctc:CTC00791 hypothetical protein
YP_001308555.1	KEGG: ctc:CTC00792 hypothetical protein
YP_001308556.1	KEGG: cno:NT01CX_1483 hypothetical protein
YP_001308557.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_001308558.1	KEGG: cno:NT01CX_0179 serine/threonine kinase related protein
YP_001308559.1	KEGG: cac:CAC0544 permease
YP_001308560.1	PFAM: protein of unknown function DUF1121; KEGG: ctc:CTC00589 hypothetical protein
YP_001308561.1	TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: cpf:CPF_1255 glutamyl-tRNA synthetase
YP_001308562.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: cac:CAC2547 possible membrane-associated methyl-accepting chemotaxis protein fused to HAMP domain
YP_001308563.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001308564.1	PFAM: protein of unknown function DUF161; KEGG: dsy:DSY3984 hypothetical protein
YP_001308565.1	TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); seryl-tRNA synthetase, class IIa; KEGG: pfu:PF1204 seryl-tRNA synthetase
YP_001308566.1	KEGG: cac:CAC0072 hypothetical protein
YP_001308567.1	KEGG: sec:SC064 hypothetical protein
YP_001308568.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_001308569.1	PFAM: Heavy metal transport/detoxification protein; KEGG: cac:CAC1554 heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis CycZ-like domain, possible membrane copper tolerance protein
YP_001308570.1	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: swo:Swol_0162 subtilisin-like serine proteases-like
YP_001308571.1	KEGG: bca:BCE_0720 lipoprotein
YP_001308572.1	KEGG: bcz:pE33L466_0396 hypothetical protein
YP_001308573.1	PFAM: LacI family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; KEGG: ooe:OEOE_0808 transcriptional regulator
YP_001308574.1	PFAM: extracellular solute-binding protein, family 1; KEGG: oih:OB2570 multiple sugar-binding transport system multiple sugar-binding protein
YP_001308575.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB2569 multiple sugar-binding transport system permease
YP_001308576.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB2568 multiple sugar-binding transport system permease
YP_001308577.1	PFAM: glycoside hydrolase, family 31; KEGG: lac:LBA1812 alpha-glucosidase II
YP_001308578.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: lmf:LMOf2365_0270 oligo-1,6-glucosidase
YP_001308579.1	PFAM: protein of unknown function DUF1002; KEGG: ctc:CTC01501 hypothetical protein
YP_001308580.1	exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH
YP_001308581.1	PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: cpr:CPR_1411 small, acid-soluble spore protein
YP_001308582.1	PFAM: ArsR family transcriptional regulator; KEGG: cpf:CPF_2588  cadmium resistance transcriptional regulator CadC
YP_001308583.1	TIGRFAM: ATPase P; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY0829 hypothetical protein
YP_001308584.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: cth:Cthe_2978 transcriptional regulator, Crp/Fnr family
YP_001308585.1	PFAM: Rhodanese domain protein; KEGG: cac:CA_P0032 rhodanese-like domain
YP_001308586.1	TIGRFAM: C_GCAxxG_C_C family protein; KEGG: cac:CA_P0033 hypothetical protein
YP_001308587.1	KEGG: bld:BLi02295 YodP
YP_001308588.1	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: cpf:CPF_2369 subtilase family protein
YP_001308589.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_2017 choline binding protein A
YP_001308590.1	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: cpf:CPF_2369 subtilase family protein
YP_001308591.1	KEGG: cth:Cthe_3121 hypothetical protein
YP_001308592.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cth:Cthe_3120 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein
YP_001308593.1	KEGG: cth:Cthe_0266 methyl-accepting chemotaxis sensory transducer
YP_001308594.1	KEGG: cac:CAC3379 uncharacterized protein, YQFW B.subtilis homolog
YP_001308597.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: PAS domain containing protein; ATPase AAA; KEGG: cno:NT01CX_0345 aco operon expression regulatory protein
YP_001308598.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cno:NT01CX_0344 2,3-butanediol dehydrogenase
YP_001308599.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cpf:CPF_1464 oxidoreductase, NAD-binding
YP_001308600.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_001308601.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mbu:Mbur_0990 metal-dependent phosphohydrolase
YP_001308602.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cac:CAC0087 predicted Co/Zn/Cd cation transporter
YP_001308603.1	KEGG: cpf:CPF_2252 hypothetical protein
YP_001308604.1	PFAM: Extradiol ring-cleavage dioxygenase, class III protein, subunit B; KEGG: btk:BT9727_1700 conserved hypothetical protein, possible oxidoreductase
YP_001308605.1	PFAM: helix-turn-helix, HxlR type; KEGG: cac:CAC0849 predicted transcriptional regulator
YP_001308606.1	KEGG: bce:BC1952 nitroreductase
YP_001308607.1	KEGG: tte:TTE2242 transposase
YP_001308608.1	PFAM: branched-chain amino acid transport system II carrier protein; KEGG: sha:SH0145 hypothetical protein
YP_001308609.1	PFAM: phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit; KEGG: cac:CAC0383 PTS cellobiose-specific component IIA
YP_001308610.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: cac:CAC0384 PTS system, cellobiose-specific component BII
YP_001308611.1	PFAM: glycoside hydrolase, family 1; KEGG: cac:CAC0385 beta-glucosidase
YP_001308612.1	TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system, EIIC; KEGG: efa:EF0292 PTS system, IIC component
YP_001308613.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bcl:ABC0711 transcriptional regulator, RpiR family
YP_001308614.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: dsy:DSY2527 hypothetical protein
YP_001308616.1	PFAM: protein of unknown function DUF1432; KEGG: cth:Cthe_0858 protein of unknown function DUF1432
YP_001308617.1	PFAM: protein of unknown function DUF107; KEGG: cth:Cthe_0857 protein of unknown function DUF107
YP_001308618.1	PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: mta:Moth_1579 signal transduction histidine kinase regulating citrate/malate metabolism
YP_001308619.1	PFAM: GCN5-related N-acetyltransferase; KEGG: lsa:LSA0806  N-acetyl transferase, GNAT family
YP_001308620.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: bat:BAS2249 hypothetical protein
YP_001308621.1	PFAM: pentapeptide repeat protein; KEGG: ter:Tery_0271 pentapeptide repeat
YP_001308622.1	KEGG: plu:plu4347 hypothetical protein
YP_001308623.1	KEGG: sao:SAOUHSC_01931 hypothetical protein
YP_001308624.1	PFAM: phage integrase family protein; KEGG: tte:TTE2127 integrase
YP_001308625.1	PFAM: helix-turn-helix domain protein
YP_001308626.1	PFAM:  cell wall binding repeat-containing protein; cell wall hydrolase/autolysin; KEGG: ava:Ava_4396 peptidoglycan-binding domain 1
YP_001308627.1	KEGG: cpr:CPR_1247 hypothetical protein
YP_001308628.1	KEGG: cpr:CPR_1246 hypothetical protein
YP_001308629.1	PFAM: TfoX, N-terminal domain protein; KEGG: cac:CAC2476 uncharacterized protein, homolog of Spirochaeta aurantia (gi:152901)
YP_001308630.1	KEGG: blo:BL0813 hypothetical protein
YP_001308631.1	KEGG: ljo:LJ1253 hypothetical protein
YP_001308632.1	PFAM: transcriptional regulator PadR family protein; KEGG: mmp:MMP0700 transcriptional regulator PadR-like family
YP_001308633.1	KEGG: cac:CAC1997 predicted glycosyltransferase; related to UDP-glucuronosyltransferase
YP_001308634.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: lmo:lmo0661 hypothetical protein
YP_001308636.1	PFAM: protein of unknown function DUF124; KEGG: gka:GK2879 hypothetical protein
YP_001308637.1	PFAM: natural resistance-associated macrophage protein; KEGG: tte:TTE0686 Mn2+ and Fe2+ transporters of the NRAMP family
YP_001308638.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: cac:CAC1543 lactate dehydrogenase
YP_001308639.1	PFAM: manganese and iron superoxide dismutase; KEGG: efa:EF0463 superoxide dismutase, Mn
YP_001308640.1	KEGG: cpf:CPF_2899 hypothetical protein
YP_001308641.1	PFAM: protein of unknown function DUF434; KEGG: cac:CAC1606 hypothetical protein
YP_001308642.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_001308643.1	PFAM: GntR family transcriptional regulator; GntR domain protein; KEGG: sph:MGAS10270_Spy1173 transcriptional regulator, GntR family
YP_001308644.1	PFAM: Auxin Efflux Carrier; KEGG: tte:TTE0420 predicted permease
YP_001308645.1	PFAM: GntR family transcriptional regulator; GntR domain protein; KEGG: bld:BLi00487 YdhC
YP_001308646.1	KEGG: cth:Cthe_0921 hypothetical protein
YP_001308647.1	PFAM: protein of unknown function DUF255; KEGG: cth:Cthe_0291 protein of unknown function DUF255
YP_001308648.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpf:CPF_0302 ABC transporter ATP-binding protein
YP_001308649.1	KEGG: cpr:CPR_0298 uncharacterized membrane protein
YP_001308650.1	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: fnu:FN1756 thiS protein
YP_001308651.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_001308652.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center
YP_001308653.1	PFAM: regulatory protein, TetR; KEGG: cac:CA_P0127 HTH transcriptional regulator TetR family
YP_001308654.1	TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: chy:CHY_1864 drug resistance transporter EmrB/QacA family
YP_001308655.1	PFAM: CBS domain containing protein; KEGG: mth:MTH644 hypothetical protein
YP_001308656.1	PFAM: sodium:dicarboxylate symporter; KEGG: cpf:CPF_0756 proton/sodium-glutamate symporter
YP_001308657.1	PFAM: protein of unknown function DUF1130; KEGG: cpr:CPR_1069 hypothetical protein
YP_001308658.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: cno:NT01CX_1617 ErfK/YbiS/YcfS/YnhG family
YP_001308659.1	PFAM: Radical SAM domain protein; KEGG: btl:BALH_4965 possible molybdenum cofactor biosynthesis enzyme
YP_001308661.1	KEGG: cpr:CPR_1916 hypothetical protein
YP_001308662.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_001308663.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_001308664.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_001308665.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_001308666.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_001308667.1	KEGG: cac:CAC2280 predicted membrane protein
YP_001308668.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_001308669.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_001308670.1	PFAM: phosphoesterase, RecJ domain protein; KEGG: cpe:CPE1940 hypothetical protein
YP_001308671.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_001308672.1	KEGG: cpf:CPF_2193 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region
YP_001308673.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_001308674.1	PFAM: beta-lactamase domain protein; KEGG: cpr:CPR_1902 metallo-beta-lactamase family protein
YP_001308675.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001308676.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_001308677.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001308678.1	KEGG: cpf:CPF_2623 hypothetical protein
YP_001308679.1	PFAM: protein of unknown function DUF554; KEGG: dsy:DSY5050 hypothetical protein
YP_001308680.1	PFAM: protein of unknown function DUF975; KEGG: bce:BC5303 integral membrane protein
YP_001308681.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_001308682.1	PFAM: domain of unknown function DUF1745; KEGG: ppd:Ppro_3141 domain of unknown function DUF1745
YP_001308683.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; KEGG: cno:NT01CX_0224 sensory transduction histidine kinase
YP_001308684.1	KEGG: ctc:CTC00795 conserved protein (pathogens)
YP_001308685.1	KEGG: cno:NT01CX_0353 hypothetical protein
YP_001308686.1	KEGG: cpr:CPR_0425 hypothetical protein
YP_001308687.1	PFAM: transcription factor CarD; KEGG: bca:BCE_4857 transcriptional regulator, CarD family
YP_001308689.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_001308690.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cth:Cthe_0780 HAD-superfamily hydrolase, subfamily IA, variant 3
YP_001308691.1	KEGG: cpf:CPF_1786 hypothetical protein
YP_001308692.1	catalyzes the formation of 2-oxobutanoate from L-threonine
YP_001308693.1	KEGG: ctc:CTC00602 hypothetical protein
YP_001308694.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpr:CPR_0136 ATPase component of ABC transporter (two ATPase domains)
YP_001308695.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pgi:PG1358 acetyltransferase, GNAT family
YP_001308697.1	KEGG: cpr:CPR_1860 hypothetical protein
YP_001308698.1	PFAM: Sporulation protein YtxC; KEGG: cpe:CPE1895 hypothetical protein
YP_001308699.1	TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: cpf:CPF_2146 translation initiation factor IF-3
YP_001308700.1	PFAM: ribosomal protein L35; KEGG: cno:NT01CX_1762 ribosomal protein L35
YP_001308701.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_001308702.1	PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: cpf:CPF_2141 RNA methyltransferase, TrmH family
YP_001308703.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_001308704.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_001308705.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_001308706.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: cpr:CPR_1833 S-adenosyl-methyltransferase MraW
YP_001308707.1	KEGG: ctc:CTC01634 hypothetical protein
YP_001308708.1	TIGRFAM: stage V sporulation protein D; PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA domain containing protein; KEGG: ctc:CTC01633 stage V sporulation protein D
YP_001308709.1	TIGRFAM: stage V sporulation protein D; PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA domain containing protein; KEGG: ctc:CTC01633 stage V sporulation protein D
YP_001308710.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_001308711.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; KEGG: cpf:CPF_2115 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
YP_001308712.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_001308713.1	TIGRFAM: cell division protein FtsW; stage V sporulation protein E; PFAM: cell cycle protein; KEGG: cpf:CPF_2113 stage V sporulation protein E
YP_001308714.1	PFAM: Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: cpf:CPF_2112 cell division protein FtsQ
YP_001308715.1	PFAM: protein of unknown function DUF881; KEGG: cpr:CPR_1825 hypothetical protein
YP_001308716.1	PFAM: protein of unknown function DUF1290; KEGG: ctc:CTC01626 small basic protein
YP_001308717.1	PFAM: protein of unknown function DUF881; KEGG: cpf:CPF_2109 hypothetical protein
YP_001308718.1	PFAM: alanine racemase domain protein; KEGG: cpf:CPF_2108 conserved hypothetical protein TIGR00044
YP_001308719.1	PFAM: protein of unknown function DUF552; KEGG: cpr:CPR_1821 hypothetical protein
YP_001308720.1	PFAM: protein of unknown function YGGT; KEGG: dsy:DSY2886 hypothetical protein
YP_001308721.1	PFAM: RNA-binding S4 domain protein; KEGG: cpf:CPF_2106 S4 domain protein
YP_001308722.1	PFAM: DivIVA family protein; KEGG: cpr:CPR_1819 cell division protein DivIVA
YP_001308723.1	PFAM: OmpA/MotB domain protein; KEGG: cac:CAC0305 chemotaxis motility protein B, gene motB
YP_001308724.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: cac:CAC0304 chemotaxis motility protein A, gene motA
YP_001308725.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cac:CAC2114 predicted pseudouridylate synthase, YlyB B.subtilis ortholog
YP_001308726.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_001308727.1	PFAM:  RNA methylase; KEGG: cpf:CPF_2102  methyltransferase
YP_001308728.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bha:BH2940 hypothetical protein
YP_001308729.1	PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cpe:CPE1847 probable fibronectin-binding protein
YP_001308730.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_001308731.1	KEGG: ctc:CTC01605 hypothetical protein
YP_001308732.1	PFAM: GCN5-related N-acetyltransferase; KEGG: mba:Mbar_A3488 hypothetical protein
YP_001308734.1	KEGG: cpf:CPF_2098  pilus biogenesis protein
YP_001308735.1	PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: cac:CAC1951 site-specific recombinases, DNA invertase Pin homolog
YP_001308736.1	PFAM: Fibronectin, type III domain protein; Haemagluttinin repeat-containing protein; KEGG: cth:Cthe_1235 cellulose 1,4-beta-cellobiosidase
YP_001308737.1	KEGG: cac:CA_P0101 hypothetical protein
YP_001308740.1	KEGG: vvy:VV1763 hypothetical protein
YP_001308741.1	PFAM: Ion transport 2 domain protein; KEGG: hch:HCH_00361 uncharacterized low-complexity protein
YP_001308742.1	PFAM: SEC-C motif domain protein; KEGG: ehi:112.t00003 hypothetical protein Pfam: Prefoldin_2 U3_assoc_6 PROSITE: ASN_RICH GLU_RICH LYS_RICH
YP_001308743.1	KEGG: psb:Psyr_1263 ATPas
YP_001308744.1	KEGG: mma:MM2421 chaperone protein
YP_001308745.1	PFAM: helix-turn-helix domain protein; KEGG: gka:GK0493 transcriptional regulator
YP_001308746.1	PFAM: helix-turn-helix domain protein
YP_001308747.1	KEGG: cpf:CPF_1602 hypothetical protein
YP_001308749.1	KEGG: gfo:orf2459 hypothetical protein
YP_001308751.1	PFAM: RecT protein; KEGG: sau:SA1794 hypothetical protein
YP_001308752.1	PFAM: beta-lactamase domain protein; KEGG: lin:lin1754 hypothetical protein
YP_001308753.1	TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: lin:lin1753 hypothetical protein
YP_001308754.1	KEGG: cno:NT01CX_2185 hypothetical protein
YP_001308756.1	PFAM: protein of unknown function DUF1064; KEGG: ctc:CTC01079 hypothetical protein
YP_001308757.1	KEGG: ctc:CTC01080 hypothetical protein
YP_001308759.1	KEGG: ctc:CTC02136 hypothetical protein
YP_001308760.1	KEGG: dps:DP1578 hypothetical protein
YP_001308762.1	PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: spj:MGAS2096_Spy0574 chromosome partitioning protein ParB / adenine-specific methyltransferase
YP_001308763.1	KEGG: cth:Cthe_1725 hypothetical protein
YP_001308764.1	KEGG: bha:BH3534 hypothetical protein
YP_001308765.1	KEGG: bsu:BG11270 similar to phage-related terminase small subunit
YP_001308766.1	KEGG: rru:Rru_A2590 hypothetical protein
YP_001308768.1	KEGG: gfo:orf2413 hypothetical protein
YP_001308777.1	KEGG: dsy:DSY3957 hypothetical protein
YP_001308778.1	KEGG: ctc:CTC02124 phage-like element pbsx protein XkdM
YP_001308779.1	PFAM: Phage XkdN-like protein
YP_001308780.1	TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: gka:GK0539 bacteriophage-related protein
YP_001308782.1	PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: lin:lin1283 hypothetical protein
YP_001308783.1	KEGG: bld:BLi01343 YqbQ
YP_001308785.1	KEGG: lin:lin1286 hypothetical protein
YP_001308786.1	PFAM: Baseplate J family protein; KEGG: ctc:CTC02115 phage-like element pbsx protein XkdT
YP_001308787.1	KEGG: ctc:CTC02114 hypothetical protein
YP_001308788.1	KEGG: ctc:CTC02112 phage-like element pbsx protein XkdT
YP_001308792.1	TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; Ig domain protein, group 2 domain protein; KEGG: cac:CAC2107 contains cell adhesion domain
YP_001308793.1	PFAM: Ig domain protein, group 2 domain protein; KEGG: cac:CAC2107 contains cell adhesion domain
YP_001308794.1	KEGG: cpr:CPR_C0053 hypothetical protein
YP_001308795.1	KEGG: cpf:CPF_0972 hypothetical protein
YP_001308796.1	PFAM: glycoside hydrolase, family 25; KEGG: cpr:CPR_C0050 autolytic lysozyme
YP_001308797.1	PFAM: extracellular solute-binding protein, family 3; KEGG: bja:blr2224 ABC transporter amino acid-binding protein
YP_001308798.1	KEGG: cpr:CPR_1341 D-galactose-binding periplasmic protein precursor
YP_001308800.1	KEGG: ctc:CTC01990  transposase
YP_001308803.1	KEGG: cac:CAC1318 hypothetical protein
YP_001308804.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_0357 choline binding protein F
YP_001308805.1	PFAM: beta-lactamase domain protein; KEGG: ctc:CTC01364 hypothetical membrane spanning protein
YP_001308808.1	PFAM: MgtC/SapB transporter; KEGG: cac:CAC3658 uncharacterized conserved membrane protein, SapB/MtgC family
YP_001308810.1	PFAM: type II secretion system protein; KEGG: aae:aq_747 fimbrial assembly protein PilC
YP_001308813.1	KEGG: cac:CAC2100 hypothetical protein
YP_001308818.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_001308819.1	KEGG: cpf:CPF_2088 hypothetical protein
YP_001308820.1	TIGRFAM: Sporulation stage III, protein AA; SMART: ATPase AAA; KEGG: cpr:CPR_1801 stage III sporulation protein AA
YP_001308821.1	necessary for complete engulfment of forespore
YP_001308822.1	PFAM: Stage III sporulation AC family protein; KEGG: cac:CAC2091 stage III sporulation protein AC, SpoIIIAC
YP_001308823.1	TIGRFAM: Sporulation stage III, protein AD; KEGG: cno:NT01CX_1972 stage III sporulation protein AD, SpoIIIAD
YP_001308824.1	TIGRFAM: Sporulation stage III, protein AE; KEGG: cpf:CPF_2083 stage III sporulation protein AE
YP_001308825.1	TIGRFAM: Sporulation stage III, protein AF; KEGG: cac:CAC2088 stage III sporulation protein AF, SpoIIIAF
YP_001308826.1	TIGRFAM: Sporulation stage III, protein AG; KEGG: cpe:CPE1827 stage III sporulation protein AG
YP_001308827.1	KEGG: cpr:CPR_1794 stage III sporulation protein AH
YP_001308828.1	PFAM: protein of unknown function DUF322; KEGG: cac:CAC2085 uncharacterized protein from alkaline shock protein family, YQHY B.subtilis ortholog
YP_001308829.1	TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: cpr:CPR_1792 N utilization substance protein B
YP_001308830.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_001308831.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_001308832.1	PFAM: Exonuclease VII, small subunit; KEGG: cno:NT01CX_1981 exodeoxyribonuclease VII, small subunit
YP_001308833.1	PFAM: Polyprenyl synthetase; KEGG: cno:NT01CX_1982 geranyltranstransferase
YP_001308834.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_001308835.1	TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: cno:NT01CX_1984 hemolysin A
YP_001308836.1	PFAM: ATP-NAD/AcoX kinase; KEGG: cpe:CPE1817 NAD+ kinase
YP_001308837.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_001308838.1	TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: cpr:CPR_1783 DNA repair protein RecN
YP_001308839.1	TIGRFAM: Peptidase S55, sporulation stage IV, protein B; PFAM: PDZ/DHR/GLGF domain protein; peptidase S55, SpoIVB; KEGG: cpe:CPE1814 stage IV sporulation protein B
YP_001308840.1	TIGRFAM: Sporulation response regulator, Spo0A; PFAM: response regulator receiver; Sporulation initiation factor Spo0A-like; KEGG: cpf:CPF_2067 Spo0A protein
YP_001308841.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ppd:Ppro_3068 hemerythrin-like metal-binding protein
YP_001308843.1	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: cpf:CPF_1756  uracil permease
YP_001308844.1	KEGG: bce:BC3526 collagen adhesion protein
YP_001308845.1	KEGG: cth:Cthe_1644 hypothetical protein
YP_001308846.1	KEGG: cpr:CPR_0353 prophage ps3 protein 01
YP_001308847.1	PFAM: Phosphoglycerate mutase; KEGG: cac:CAC3021 possible phosphoglycerate mutase
YP_001308848.1	KEGG: swo:Swol_1844 hypothetical protein
YP_001308849.1	PFAM: metallophosphoesterase; KEGG: mma:MM3285 hypothetical protein
YP_001308850.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: cpf:CPF_1465 NADPH-dependent butanol dehydrogenase
YP_001308851.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cno:NT01CX_0316 membrane assosiated methyl-accepting chemotaxis protein with HAMP domain
YP_001308852.1	PFAM: glycosyl transferase, family 2; KEGG: cac:CAC3661 glycosyltransferase
YP_001308853.1	PFAM: glycosyl transferase, family 39; KEGG: cac:CAC2251 uncharacterized conserved membrane protein, affecting LPS biosynthesis
YP_001308854.1	KEGG: cac:CAC0354 uncharacterized membrane protein
YP_001308855.1	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cno:NT01CX_1540 UTP-glucose-1-phosphate uridylyltransferase
YP_001308856.1	KEGG: ava:Ava_5022 hypothetical protein
YP_001308857.1	TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; Glycosyltransferase 28, C-terminal domain; KEGG: btk:BT9727_1898 glycosyltransferase; possible macrolide glycosyltransferase
YP_001308858.1	PFAM: NUDIX hydrolase; KEGG: lmf:LMOf2365_0384 MutT/nudix family protein
YP_001308859.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cno:NT01CX_1513 two-component response regulator
YP_001308860.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cno:NT01CX_1514 membrane associated histidine kinase with HAMP domain
YP_001308861.1	KEGG: cpr:CPR_0939 hypothetical protein
YP_001308863.1	KEGG: rno:690249 hypothetical protein LOC690249
YP_001308864.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: dsy:DSY1734 hypothetical protein
YP_001308865.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: cpf:CPF_0793 flavodoxin family protein
YP_001308866.1	KEGG: cpr:CPR_0375 hypothetical protein
YP_001308867.1	PFAM: protein of unknown function DUF328; KEGG: cpf:CPF_2407 hypothetical protein
YP_001308868.1	member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions
YP_001308869.1	TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: cac:CAC0965 1-acyl-sn-glycerol-3-phosphate acyltransferase
YP_001308870.1	TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor G, domain IV; KEGG: cac:CAC0854 tetracycline resistance protein TetP, contain GTP-ase domain
YP_001308871.1	PFAM: protein of unknown function DUF45; KEGG: cpf:CPF_0800 hypothetical protein
YP_001308872.1	PFAM: protein of unknown function DUF606; KEGG: bce:BC3451 hypothetical membrane spanning protein
YP_001308873.1	PFAM: protein of unknown function DUF606; KEGG: bca:BCE_3463 hypothetical protein
YP_001308874.1	PFAM: cyclic nucleotide-binding; KEGG: btk:BT9727_3228 possible transcriptional regulator; cyclic nucleotide-binding domain protein
YP_001308875.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cno:NT01CX_2355 ATP-dependent RNA helicase
YP_001308876.1	TIGRFAM:  transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cac:CAC2236 uncharacterized conserved protein of YjeB/RRF2 family
YP_001308877.1	TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: tte:TTE1583 anthranilate/para-aminobenzoate synthases component I
YP_001308878.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: cac:CAC3162  anthranilate synthase component II
YP_001308879.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001308880.1	PFAM: Indole-3-glycerol phosphate synthase; KEGG: cac:CAC3160 indole-3-glycerol phosphate synthase
YP_001308881.1	PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: cth:Cthe_0871 phosphoribosylanthranilate isomerase
YP_001308882.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_001308883.1	TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase, alpha chain; KEGG: cac:CAC3157 tryptophan synthase alpha chain
YP_001308884.1	PFAM: protein of unknown function DUF1284; KEGG: cno:NT01CX_0018 hypothetical protein
YP_001308885.1	KEGG: cpr:CPR_1498 hypothetical protein
YP_001308886.1	KEGG: ctc:CTC01852 hypothetical protein
YP_001308887.1	TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; KEGG: bat:BAS2313 phosphoglycerate mutase
YP_001308888.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: lsa:LSA0328  drug:Na(+) antiporter (drug efflux pump)
YP_001308889.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mst:Msp_1323 hypothetical protein
YP_001308890.1	PFAM: Extracellular ligand-binding receptor; KEGG: lip:LI0496 branched chain amino acid ABC transporter periplasmic amino acid-binding protein
YP_001308891.1	PFAM: inner-membrane translocator; KEGG: sfu:Sfum_0861 inner-membrane translocator
YP_001308892.1	PFAM: inner-membrane translocator; KEGG: bqu:BQ06310 high-affinity branched-chain amino acid transporter permease
YP_001308893.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: tma:TM1138 branched-chain amino acid transport system ATP-binding protein
YP_001308894.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: tma:TM1139 branched-chain amino acid transport system ATP-binding protein
YP_001308895.1	PFAM: Extracellular ligand-binding receptor; KEGG: lip:LI0496 branched chain amino acid ABC transporter periplasmic amino acid-binding protein
YP_001308896.1	KEGG: cpe:CPE0415 hypothetical protein
YP_001308897.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dge:Dgeo_1614 diguanylate cyclase with PAS/PAC sensor
YP_001308898.1	PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: cac:CA_P0049 permease, MDR related
YP_001308899.1	PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: cpr:CPR_0434 sulfite/nitrite reductase
YP_001308900.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cth:Cthe_0780 HAD-superfamily hydrolase, subfamily IA, variant 3
YP_001308901.1	TIGRFAM: hydrogenase, Fe-only; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: pca:Pcar_1605 NADH:ubiquinone oxidoreductase subunit
YP_001308902.1	PFAM: protein of unknown function DUF47; KEGG: cpf:CPF_0562 hypothetical protein
YP_001308903.1	PFAM: phosphate transporter; KEGG: cpr:CPR_0549 phosphate permease
YP_001308905.1	PFAM: metallophosphoesterase; KEGG: cth:Cthe_1896 metallophosphoesterase
YP_001308906.1	KEGG: cno:NT01CX_2050 hypothetical protein
YP_001308907.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cac:CAC0249 glyoxalase I (glyoxalase family)
YP_001308908.1	PFAM: aminotransferase, class I and II; KEGG: tde:TDE1669 hemolysin
YP_001308909.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_001308910.1	PFAM: Integral membrane protein TerC; KEGG: chu:CHU_1367 probable integral membrane protein, TerC family
YP_001308911.1	TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; KEGG: cno:NT01CX_1729 folylpolyglutamate synthase
YP_001308912.1	PFAM: HIRAN; KEGG: ctc:CTC01149 hypothetical protein
YP_001308913.1	KEGG: cpf:CPF_1268 hypothetical protein
YP_001308914.1	TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: ctc:CTC02300 hypothetical protein
YP_001308915.1	KEGG: cpr:CPR_1879 hypothetical protein
YP_001308916.1	PFAM: polysaccharide deacetylase; KEGG: cpr:CPR_1878 polysaccharide deacetylase family protein
YP_001308917.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_001308918.1	PFAM: transferase hexapeptide repeat containing protein; Tetrahydrodipicolinate succinyltransferase N-terminal domain protein; KEGG: cpf:CPF_2165 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
YP_001308919.1	PFAM: aminotransferase, class I and II; KEGG: cpr:CPR_1874 aspartate aminotransferase
YP_001308920.1	PFAM: protein of unknown function DUF1255; KEGG: pca:Pcar_1338 hypothetical protein
YP_001308921.1	PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; KEGG: ssa:SSA_1771 conserved DNA methyltransferase protein
YP_001308922.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_001308923.1	TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: cno:NT01CX_1746 dihydrodipicolinate synthase
YP_001308924.1	TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; KEGG: cpf:CPF_2160 aspartate-semialdehyde dehydrogenase
YP_001308925.1	KEGG: cno:NT01CX_1748 small acid-soluble spore protein
YP_001308926.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cpf:CPF_2158 hypothetical protein
YP_001308927.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_001308928.1	PFAM: protein of unknown function DUF218; KEGG: cpe:CPE1241 hypothetical protein
YP_001308929.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cpr:CPR_0987 ribosomal large subunit pseudouridine synthase F
YP_001308931.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ctc:CTC01491 sensory transduction protein kinase
YP_001308932.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: chy:CHY_0092 DNA-binding response regulator
YP_001308933.1	KEGG: pfa:PF14_0337 hypothetical protein
YP_001308934.1	PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3620 hypothetical protein
YP_001308935.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY3619 hypothetical protein
YP_001308936.1	PFAM: protein of unknown function DUF214; KEGG: dsy:DSY3618 hypothetical protein
YP_001308937.1	KEGG: cno:NT01CX_1194 hypothetical protein
YP_001308938.1	PFAM: SNARE associated Golgi protein; KEGG: cpe:CPE1612 hypothetical protein
YP_001308939.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_001308940.1	PFAM: peptidase M42 family protein; KEGG: cpf:CPF_1252 aminopeptidase, M42 family
YP_001308941.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cac:CAC0632 predicted phosphatase
YP_001308942.1	PFAM: leucine-rich repeat protein; cell wall binding repeat-containing protein; SMART: leucine-rich repeat-containing protein, typical subtype; KEGG: cpf:CPF_0611 cell wall binding repeat protein
YP_001308943.1	PFAM: cobalamin synthesis protein, P47K; KEGG: ctc:CTC00941 cobalamin synthesis protein CobW
YP_001308944.1	KEGG: ctc:CTC00940 hypothetical protein
YP_001308945.1	PFAM: permease; KEGG: cno:NT01CX_2389 predicted permease superfamily
YP_001308946.1	KEGG: ctc:CTC00938 membrane-spanning protein
YP_001308948.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ctc:CTC01856 ATP-dependent RNA helicase
YP_001308949.1	PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: baa:BA_0561 DEAD/DEAH box helicase
YP_001308950.1	TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; SEC-C motif domain protein; KEGG: cpf:CPF_1635 methionine aminopeptidase, type I
YP_001308951.1	TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cno:NT01CX_2302 ATP-dependent DNA helicase
YP_001308952.1	PFAM: heat shock protein DnaJ domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: cno:NT01CX_1376 molecular chaperone, DnaJ family (contain C-term. Zn finger domain)
YP_001308953.1	Heat shock-induced
YP_001308954.1	KEGG: bsu:BG13272 hypothetical protein
YP_001308955.1	catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions
YP_001308956.1	PFAM: Phosphoglycerate mutase; KEGG: bha:BH0736 hypothetical protein
YP_001308957.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_001308958.1	PFAM: LacI family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; KEGG: cac:CAC0693 transcriptional regulator of the LacI family
YP_001308959.1	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism
YP_001308960.1	catalyzes the formation of D-tagaturonate from D-altronate
YP_001308961.1	PFAM: histidine triad (HIT) protein; KEGG: bth:BT_4586 hypothetical protein
YP_001308962.1	TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: lbr:LVIS_0148 Na+/xyloside symporter related transporter
YP_001308963.1	catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate
YP_001308964.1	PFAM: PfkB domain protein; KEGG: gka:GK1957 2-keto-3-deoxy-gluconate kinase
YP_001308965.1	catalyzes the formation of D-tagaturonate from D-altronate
YP_001308966.1	PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: cac:CAC0696  altronate dehydratase
YP_001308967.1	TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PFAM: PTS system sorbose subfamily IIB component; KEGG: yps:YPTB1634 PTS system, mannose-specific IIAB component
YP_001308968.1	PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: ctc:CTC00497 pyridoxal kinase
YP_001308969.1	PFAM: regulatory protein, DeoR; KEGG: cpf:CPF_0566 transcriptional regulator, DeoR family
YP_001308970.1	PFAM: PfkB domain protein; KEGG: cno:NT01CX_1725 1-phosphofructokinase
YP_001308971.1	TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: btk:BT9727_3462 PTS fructose-specific enzyme IIBC component
YP_001308972.1	KEGG: cpf:CPF_1730 hypothetical protein
YP_001308973.1	PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cac:CAC0760 uncharacterized conserved protein, YTFE family, possibly metal-binding
YP_001308974.1	TIGRFAM:  transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: maq:Maqu_3071 transcriptional regulator, BadM/Rrf2 family
YP_001308975.1	TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC3288 iron-regulated ABC transporter ATPase subunit (SufC), VEG296 B.subtilis ortholog
YP_001308976.1	TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: cac:CAC3289 iron-regulated ABC-type transporter membrane component (SufB)
YP_001308977.1	TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: cac:CAC3290 iron-regulated ABC-type transporter membrane component (SufB)
YP_001308978.1	TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cac:CAC3291 selenocysteine lyase, NifS family
YP_001308979.1	TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: cac:CAC3292 NifU homolog involved in Fe-S cluster formation
YP_001308980.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cpf:CPF_2318 pyruvate-flavodoxin oxidoreductase
YP_001308981.1	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: cpr:CPR_2070 subtilase family protein
YP_001308982.1	PFAM: protein of unknown function DUF342; KEGG: cac:CAC2225 hypothetical protein
YP_001308983.1	PFAM: manganese and iron superoxide dismutase; KEGG: cpr:CPR_1251 Mn/Fe superoxide dismutase
YP_001308984.1	PFAM: pentapeptide repeat protein; KEGG: cpe:CPE0960 hypothetical protein
YP_001308985.1	TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cac:CAC1624 uncharacterized protein from DegV (B.subtilis) family
YP_001308986.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: cac:CAC1576 predicted oxidoreductase, ortholog of GSP39 B.subtilis
YP_001308987.1	PFAM: ArsR family transcriptional regulator; KEGG: cpr:CPR_0825 transcription regulator
YP_001308988.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpr:CPR_0828 MATE efflux family protein
YP_001308989.1	Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine
YP_001308991.1	KEGG: cac:CAC1097 hypothetical protein
YP_001308993.1	KEGG: cpr:CPR_1897 hypothetical protein
YP_001308994.1	PFAM: protein of unknown function DUF1212; KEGG: cac:CAC2265 hypothetical protein
YP_001308995.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_001308996.1	PFAM: isochorismatase hydrolase; KEGG: smu:SMU.326 hypothetical protein
YP_001308998.1	KEGG: cpf:CPF_1206 hypothetical protein
YP_001309000.1	decatenates replicating daughter chromosomes
YP_001309001.1	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cpf:CPF_2061 D-alanyl-D-alanine carboxypeptidase
YP_001309002.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB
YP_001309003.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer
YP_001309004.1	TIGRFAM: Sporulation protein YtfJ; KEGG: cpr:CPR_1772 hypothetical protein
YP_001309005.1	KEGG: cpr:CPR_1771 hypothetical protein
YP_001309006.1	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: cpr:CPR_1770 penicillin-binding protein 5* precursor
YP_001309007.1	KEGG: cpe:CPE1800 hypothetical protein
YP_001309008.1	PFAM: glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cpe:CPE1799 hypothetical protein
YP_001309009.1	KEGG: cpf:CPF_0742 hypothetical protein
YP_001309010.1	PFAM: amino acid permease-associated region; KEGG: tte:TTE0446 amino acid transporters
YP_001309012.1	PFAM: GntR family transcriptional regulator; KEGG: cno:NT01CX_0244 transcriptional regulator, GntR family
YP_001309013.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ctc:CTC01985 ABC transporter ATP-binding protein
YP_001309014.1	KEGG: cno:NT01CX_0242 membrane spanning protein
YP_001309015.1	KEGG: cel:ZK643.8 GRound-Like (grd related)
YP_001309016.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cpf:CPF_1336 ribosomal small subunit pseudouridine synthase B
YP_001309017.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cpr:CPR_1149 transcriptional regulator, RpiR family
YP_001309018.1	PFAM: Polynucleotide adenylyltransferase region; KEGG: ctc:CTC01205 tRNA nucleotidyltransferase (CCA-adding enzyme)
YP_001309019.1	PFAM: domain of unknown function DUF1745; KEGG: ppd:Ppro_3141 domain of unknown function DUF1745
YP_001309020.1	PFAM: chemotaxis sensory transducer; KEGG: tma:TM1428 methyl-accepting chemotaxis protein
YP_001309021.1	KEGG: tte:TTE1271 hypothetical protein
YP_001309022.1	PFAM: protein of unknown function DUF477; KEGG: ctc:CTC00359 hypothetical protein
YP_001309023.1	PFAM: LemA family protein; KEGG: ctc:CTC00358 lemA-like protein
YP_001309024.1	PFAM: Mg2+ transporter protein, CorA family protein; KEGG: tde:TDE1034 magnesium and cobalt transporter
YP_001309025.1	TIGRFAM: calcium/proton antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: cpf:CPF_1624 calcium/proton exchanger
YP_001309026.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cpr:CPR_0440 lactoylglutathione lyase
YP_001309027.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; NTF2 domain protein N-terminal transpeptidase; KEGG: cac:CAC3683 penicillin-binding protein 2 (serine-type D-Ala-D-Ala carboxypeptidase)
YP_001309028.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hydrogenase large subunit domain protein; KEGG: cpe:CPE0276 probable hydrogenase
YP_001309030.1	TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase, class-II; KEGG: cpr:CPR_1350 fructose-1,6-bisphosphate aldolase, class II
YP_001309031.1	PFAM: transcription factor CarD; KEGG: btl:BALH_4288 transcriptional regulator, CarD family
YP_001309032.1	KEGG: cpf:CPF_2926 hypothetical protein
YP_001309034.1	KEGG: gka:GK0660 hypothetical protein
YP_001309035.1	KEGG: lca:LSEI_0621 predicted membrane protein
YP_001309036.1	PFAM: FAD dependent oxidoreductase; KEGG: cno:NT01CX_0904 NAD(FAD)-utilizing dehydrogenase
YP_001309039.1	PFAM: BioY protein; KEGG: ctc:CTC02091 bioY protein
YP_001309040.1	KEGG: cpf:CPF_1795 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB
YP_001309041.1	KEGG: cpf:CPF_2252 hypothetical protein
YP_001309042.1	PFAM: protein of unknown function DUF541; KEGG: ctc:CTC01814 periplasmic immunogenic protein
YP_001309043.1	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway
YP_001309044.1	PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: stm:STM2570 PTS system, sucrose-specific IIBC component
YP_001309045.1	PFAM: protein of unknown function DUF871; KEGG: bca:BCE_0915 hypothetical protein
YP_001309046.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: tte:TTE0211 transcriptional regulator
YP_001309047.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pau:PA14_03830 N-carbamoylputrescine amidohydrolase
YP_001309048.1	PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: lpf:lpl0005 hypothetical protein
YP_001309049.1	PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BG10025 similar to antibiotic resistance protein
YP_001309050.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001309051.1	KEGG: cac:CAC0207 hypothetical protein, CF-6 family
YP_001309052.1	PFAM: transcriptional regulator PadR family protein; KEGG: cac:CAC3370 predicted transcriptional regulator
YP_001309053.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cac:CAC3371 2-enoate reductase (two distinct NAD(FAD)-dependent dehydrogenase domains)
YP_001309054.1	KEGG: cth:Cthe_1219 hypothetical protein
YP_001309055.1	PFAM: protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: ctc:CTC01225 serine/threonine protein kinase
YP_001309056.1	KEGG: ctc:CTC00548 hypothetical protein
YP_001309057.1	KEGG: cac:CAC0803 hypothetical protein
YP_001309058.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: msu:MS0883 hypothetical protein
YP_001309059.1	PFAM: glucose-inhibited division protein A; HI0933 family protein; KEGG: ctc:CTC01382 hypothetical protein
YP_001309061.1	PFAM: purine catabolism PurC domain protein; KEGG: cac:CAC1426 possible transcriptional regulator from leucine-rich protein (LRPR) family
YP_001309062.1	PFAM: aminotransferase class-III; KEGG: rha:RHA1_ro04469 4-aminobutyrate transaminase
YP_001309063.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: cpf:CPF_0080 alcohol dehydrogenase, iron-containing
YP_001309064.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: rle:RL3720  ATP-binding component of ABC transporter
YP_001309065.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_128GM hypothetical protein
YP_001309066.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_3097 ABC transporter permease
YP_001309067.1	PFAM: NMT1/THI5 like; KEGG: fal:FRAAL1422  ABC transporter substrate binding protein
YP_001309068.1	TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ehi:189.t00008 D-hydantoinase
YP_001309069.1	catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines
YP_001309070.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_001309071.1	PFAM: CBS domain containing protein; KEGG: ctc:CTC00347 inosine-5-monophosphate dehydrogenase related protein
YP_001309072.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ppd:Ppro_1810 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_001309073.1	KEGG: art:Arth_1808 Zn-dependent hydrolases of the beta-lactamase fold-like protein
YP_001309074.1	KEGG: cth:Cthe_2999 hypothetical protein
YP_001309075.1	KEGG: rpa:RPA1434 hypothetical protein
YP_001309076.1	KEGG: dsy:DSY3734 hypothetical protein
YP_001309077.1	KEGG: lin:lin1229 hypothetical protein
YP_001309078.1	KEGG: pfa:PFL0350c hypothetical protein
YP_001309079.1	PFAM: aldehyde dehydrogenase; KEGG: sav:SAV1920 aldehyde dehydrogenase
YP_001309080.1	PFAM: major facilitator superfamily MFS_1; KEGG: cac:CAC0560 integral membrane protein similar to antibiotic resistance protein B.subtilis
YP_001309081.1	PFAM: regulatory protein, MarR; Helix-turn-helix, type 11 domain protein; KEGG: cac:CAC0559 transcriptional regulator, MarR/EmrR family
YP_001309082.1	KEGG: cac:CAC0275 hypothetical protein
YP_001309083.1	PFAM: thioesterase superfamily protein; KEGG: cth:Cthe_1260 4-hydroxybenzoyl-CoA thioesterase
YP_001309084.1	KEGG: dsy:DSY1430 hypothetical protein
YP_001309085.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: ctc:CTC00153 transcriptional regulatory protein
YP_001309086.1	PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; KEGG: sfu:Sfum_1736 2-dehydropantoate 2-reductase
YP_001309087.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tte:TTE0069 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
YP_001309088.1	TIGRFAM: Sporulation stage II, protein M; PFAM: protein of unknown function DUF95, transmembrane; KEGG: cac:CAC2068 sporulation factor SpoIIM, uncharacterized membrane protein
YP_001309089.1	PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: cpf:CPF_2063 tyrosine recombinase XerD
YP_001309090.1	PFAM: polysaccharide deacetylase; KEGG: cpf:CPF_0823 polysaccharide deacetylase family protein
YP_001309091.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ava:Ava_0243 molybdate ABC transporter permease
YP_001309092.1	TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ter:Tery_4148 molybdate ABC transporter inner membrane subunit
YP_001309093.1	Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases
YP_001309094.1	PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: efa:EF2577 ornithine carbamoyltransferase
YP_001309095.1	catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_001309096.1	catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position
YP_001309097.1	PFAM: YheO domain protein; KEGG: efa:EF2583 hypothetical protein
YP_001309098.1	TIGRFAM: Guanine deaminase; PFAM: amidohydrolase; KEGG: cac:CAC0282 cytosine/guanine deaminase related protein
YP_001309099.1	with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase
YP_001309100.1	PFAM: Xanthine/uracil/vitamin C permease; KEGG: cno:NT01CX_2417 guanine-hypoxanthine permease
YP_001309101.1	TIGRFAM: adenine deaminase; PFAM: amidohydrolase; KEGG: cac:CAC0887 adenine deaminase
YP_001309102.1	PFAM: regulatory protein, TetR; KEGG: dsy:DSY1100 hypothetical protein
YP_001309103.1	catalyzes the formation of pyruvate from 2,3-diaminopropionate
YP_001309104.1	in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS
YP_001309105.1	TIGRFAM:  endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: cpr:CPR_1089  endoribonuclease L-PSP
YP_001309106.1	PFAM: protein of unknown function DUF182; KEGG: ctc:CTC01880 alcohol dehydrogenase [cytochrome c-553], gamma chain-like protein
YP_001309107.1	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: bld:BLi02347 xanthine permease; RBL01134
YP_001309108.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: efa:EF2570 aldehyde oxidoreductase
YP_001309109.1	KEGG: dsy:DSY1981 hypothetical protein
YP_001309110.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: ppd:Ppro_1446 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
YP_001309111.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: ppd:Ppro_1445 (2Fe-2S)-binding domain protein
YP_001309112.1	PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: swo:Swol_1137 conserved hypothetical dehydrogenase
YP_001309113.1	PFAM: LysR family transcriptional regulator; KEGG: swo:Swol_1816 hypothetical protein
YP_001309114.1	PFAM: molybdopterin binding domain; KEGG: cpf:CPF_2046  molybdenum cofactor biosynthesis protein
YP_001309115.1	TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cpe:CPE1790 molybdenum cofactor biosynthesis protein A
YP_001309116.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_001309117.1	PFAM: MOSC domain containing protein; KEGG: cac:CAC1991 uncharacterized protein, YIIM family
YP_001309118.1	TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: ter:Tery_4147 molybdenum ABC transporter periplasmic molybdate-binding protein
YP_001309119.1	PFAM: TOBE domain protein; KEGG: hit:NTHI1793 probable molybdenum-pterin binding protein
YP_001309120.1	PFAM: ABC transporter; cobalamin synthesis protein, P47K; SMART: ATPase AAA; KEGG: swo:Swol_2095 hypothetical protein
YP_001309121.1	KEGG: ppd:Ppro_0344 hypothetical protein
YP_001309122.1	TIGRFAM: DNA binding domain, excisionase family; KEGG: cac:CAC0252 molybdate-binding protein
YP_001309123.1	KEGG: mba:Mbar_A2471 hypothetical protein
YP_001309124.1	KEGG: cac:CAC3660 uncharacterized protein, homolog of Desulfovibrio gigas (gi:6978031)
YP_001309125.1	TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein; KEGG: cac:CAC0253 nitrogenase iron protein (nitrogenase component II) gene nifH
YP_001309126.1	PFAM: nitrogen regulatory protein P-II; KEGG: cac:CAC0254 nitrogen regulatory protein PII (nitrogen fixation nifHD)
YP_001309127.1	PFAM: nitrogen regulatory protein P-II; KEGG: cac:CAC0255 nitrogen regulatory protein PII (nitrogen fixation nifHD)
YP_001309128.1	TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cac:CAC0256 nitrogenase molybdenum-iron protein, alpha chain (nitrogenase component I) gene nifD
YP_001309129.1	TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cac:CAC0257 nitrogenase molibdenum-iron protein, beta chain, gene nifK
YP_001309130.1	TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cac:CAC0258 nitrogenase iron-molibdenum cofactor biosinthesis protein, gene nifE
YP_001309131.1	KEGG: cac:CAC0259 fusion nifN/K+nifB (nifN-nitrogenase iron molybdenum cofactor biosinthesis protein, nifK-nitrogenase molibdenum-iron protein beta chain, nifB-nitrogenase iron-molibdenum cofactor biosynthesis protein); TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: oxidoreductase/nitrogenase, component 1; Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_001309132.1	KEGG: mgm:Mmc1_0047 ferredoxin, 2Fe-2S
YP_001309133.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cac:CAC2796 MoaA/NirJ family Fe-S oxidoreductase
YP_001309134.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: chy:CHY_1211 radical SAM domain protein
YP_001309135.1	SMART: regulatory protein, AsnC/Lrp family; KEGG: mta:Moth_2198  transcriptional regulator, AsnC family
YP_001309136.1	KEGG: cac:CAC2793 transcriptional regulator, Lrp family (possible nitrite reductase regulator NirD)
YP_001309137.1	KEGG: cac:CAC0260 homocitrate synthase, omega subunit nifV (nivO)
YP_001309138.1	PFAM: pyruvate carboxyltransferase; KEGG: cac:CAC0261 homocitrate synthase,alpha subunit nifV(nioA)
YP_001309139.1	PFAM: DNA polymerase, beta domain protein region; KEGG: mja:MJ0126 hypothetical protein
YP_001309141.1	PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; helicase c2; DEAD-like helicases-like; KEGG: dsy:DSY1872 hypothetical protein
YP_001309142.1	KEGG: cpr:CPR_2321 hypothetical protein
YP_001309143.1	PFAM: Patatin; KEGG: sha:SH2556 hypothetical protein
YP_001309144.1	PFAM: regulatory protein, MerR; KEGG: bha:BH3858 transcriptional regulator (MerR family)
YP_001309145.1	KEGG: spd:SPD_1327 bacterocin transport accessory protein
YP_001309146.1	KEGG: tde:TDE2752 hypothetical protein
YP_001309147.1	KEGG: cno:NT01CX_2411 hypothetical protein
YP_001309148.1	PFAM: protein of unknown function DUF542, ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: cac:CAC0071 uncharacterized conserved protein, YtfE E.coli ortholog
YP_001309149.1	KEGG: dsy:DSY1202 hypothetical protein
YP_001309150.1	PFAM: DNA polymerase, beta domain protein region; KEGG: vfi:VF1334 oxalate/formate antiporter
YP_001309151.1	KEGG: cac:CAC3679 uncharacterized protein of kdp operon, KdpX
YP_001309152.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Osmosensitive K+ channel His kinase sensor; UspA domain protein; KEGG: cac:CAC3678 sensor protein KdpD (ATPase containing sensor domain and histidine kinase domain)
YP_001309153.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC3677 KDP operon transcriptional regulatory protein KdpE (CheY-like receiver domain and HTH-type DNA-binding domain)
YP_001309154.1	PFAM: K+ potassium transporter; KEGG: cpf:CPF_1235 potassium transporter
YP_001309155.1	PFAM: transposase IS3/IS911 family protein; KEGG: pcr:Pcryo_2438 transposase IS3/IS911
YP_001309156.1	PFAM: Integrase, catalytic region; KEGG: bce:BC5180 transposase
YP_001309158.1	catalyzes the formation of crotonoyl-CoA from (3R)-3-hydroxybutanoyl-CoA
YP_001309159.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: cpr:CPR_2286 butyryl-CoA dehydrogenase
YP_001309160.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; KEGG: cpe:CPE2299 electron transfer flavoprotein beta subunit
YP_001309161.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: cpr:CPR_2284 3-hydroxybutyryl-CoA dehydrogenase
YP_001309162.1	PFAM: MaoC domain protein dehydratase; KEGG: ctc:CTC00706 (de)hydratase mit MaoC domain
YP_001309163.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold domain protein; SMART: PAS domain containing protein; ATPase AAA; KEGG: ctc:CTC00707 transcriptional regulatory protein
YP_001309164.1	PFAM: coenzyme A transferase; KEGG: ctc:CTC00708 acetyl-coA:acetoacetyl-coA transferase alpha subunit
YP_001309165.1	PFAM: Gluconate transporter; Citrate transporter; KEGG: ctc:CTC00709 integral membrane permease
YP_001309166.1	PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; KEGG: bsu:BG12132 similar to transcriptional regulator (AraC/XylS family)
YP_001309167.1	KEGG: swo:Swol_0978 hypothetical protein
YP_001309168.1	KEGG: pin:Ping_1432 hypothetical protein
YP_001309169.1	SMART: ATPase AAA; KEGG: hne:HNE_0284 hypothetical protein
YP_001309170.1	KEGG: tte:TTE2242 transposase
YP_001309171.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: oih:OB0357 two-component response regulator
YP_001309172.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: oih:OB0358 two-component sensor histidine kinase
YP_001309173.1	PFAM: SMC domain protein; ABC transporter; SMART: ATPase AAA; KEGG: oih:OB0359 ABC transporter ATP-binding protein
YP_001309174.1	PFAM: protein of unknown function DUF214; KEGG: oih:OB0360 hypothetical conserved protein
YP_001309175.1	KEGG: gka:GK1812 hypothetical protein
YP_001309176.1	KEGG: gka:GK1811 hypothetical protein
YP_001309177.1	PFAM: ApbE family lipoprotein; KEGG: smu:SMU.1088  thiamine biosynthesis lipoprotein
YP_001309178.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: lpl:lp_1422 transcription regulator
YP_001309179.1	PFAM: NADPH-dependent FMN reductase; KEGG: lpl:lp_1424 oxidoreductase ()
YP_001309180.1	TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; NADPH-dependent FMN reductase; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: smu:SMU.180  oxidoreductase; possible fumarate reductase
YP_001309181.1	PFAM: protein of unknown function DUF1304; KEGG: btl:BALH_2866 hypothetical protein
YP_001309182.1	PFAM: DSBA oxidoreductase; KEGG: cac:CAC3447 protein-disulfide isomerase DsbC/DsbG
YP_001309183.1	PFAM: SEC-C motif domain protein; KEGG: dsy:DSY0707 hypothetical protein
YP_001309185.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: llm:llmg_0910 ammonium transporter AmtB
YP_001309187.1	PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising protein, mobile region; KEGG: cac:CAC0534 phosphoenolpyruvate synthase (gene pps)
YP_001309188.1	PFAM: regulatory protein, TetR; KEGG: cth:Cthe_3140 transcriptional regulator, TetR family
YP_001309189.1	PFAM: regulatory protein, TetR; KEGG: dsy:DSY4218 hypothetical protein
YP_001309190.1	PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising protein, mobile region; KEGG: dsy:DSY4219 phosphoenolpyruvate synthase
YP_001309191.1	PFAM: amidohydrolase; KEGG: hch:HCH_01106 cytosine deaminase and related metal-dependent hydrolase
YP_001309192.1	KEGG: tde:TDE2752 hypothetical protein
YP_001309193.1	PFAM: manganese containing catalase; KEGG: cpr:CPR_0934 spore coat peptide assembly protein CotJC
YP_001309194.1	KEGG: cpr:CPR_0933 spore coat peptide assembly protein CotJB
YP_001309195.1	KEGG: cpf:CPF_1066 hypothetical protein
YP_001309196.1	PFAM: extracellular solute-binding protein, family 3; KEGG: bja:blr2224 ABC transporter amino acid-binding protein
YP_001309197.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cac:CAC3319 signal transduction histidine kinase
YP_001309198.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC1557 predicted acetyltransferase
YP_001309199.1	PFAM: NUDIX hydrolase; KEGG: cth:Cthe_3126 NUDIX hydrolase
YP_001309200.1	KEGG: shw:Sputw3181_1681 ribose-phosphate pyrophosphokinase
YP_001309201.1	KEGG: lla:L67226 amidase
YP_001309202.1	PFAM: Nicotinate phosphoribosyltransferase and related; KEGG: son:SO1981 hypothetical protein
YP_001309204.1	KEGG: rha:RHA1_ro08617 hypothetical protein
YP_001309205.1	PFAM: adenylosuccinate synthetase; KEGG: rha:RHA1_ro08616 adenylosuccinate synthetase
YP_001309206.1	PFAM: GntR family transcriptional regulator; aminotransferase, class I and II; KEGG: bca:BCE_2708 transcriptional regulator, GntR family
YP_001309207.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cac:CAC2593 uncharacterized conserved membrane protein, YGGA family
YP_001309208.1	PFAM: dihydrouridine synthase, DuS; KEGG: cac:CAC3454 predicted TIM-barrel enzyme, NifR3 family
YP_001309209.1	enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity
YP_001309210.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cno:NT01CX_0224 sensory transduction histidine kinase
YP_001309211.1	PFAM: TENA/THI-4 domain protein; KEGG: bce:BC0742 transcriptional activator tenA
YP_001309212.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bha:BH2680 ABC transporter (ATP-binding protein)
YP_001309213.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC1399 ABC transporter permease component
YP_001309214.1	PFAM: NMT1/THI5 like; KEGG: bce:BC0745 hydroxymethylpyrimidine-binding protein
YP_001309215.1	PFAM: regulatory protein, MarR; transcriptional regulator TrmB; KEGG: tte:TTE2515 transcriptional regulator
YP_001309216.1	PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC3282 ABC-type multidrug/protein/lipid transport system, ATPase component
YP_001309217.1	PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: ATPase AAA; KEGG: cno:NT01CX_1825 ABC-type multidrug/protein/lipid transport system, ATPase
YP_001309218.1	KEGG: pin:Ping_1634  acyl carrier protein
YP_001309219.1	PFAM: AMP-dependent synthetase and ligase; KEGG: mhu:Mhun_3158 AMP-dependent synthetase and ligase
YP_001309220.1	PFAM: acyl-protein synthetase, LuxE; KEGG: mhu:Mhun_3112 acyl-protein synthetase, LuxE
YP_001309221.1	PFAM: acyl-CoA reductase; KEGG: mhu:Mhun_3113 acyl protein synthase/acyl-CoA reductase RfbN
YP_001309222.1	TIGRFAM: PAS sensor protein; PFAM: CBS domain containing protein; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: ATPase AAA; KEGG: swo:Swol_1487 sigma-L-dependent transcriptional regulator
YP_001309223.1	PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: pgi:PG0692  gamma-aminobutyrate metabolism dehydratase/isomerase
YP_001309224.1	PFAM: nitrogen-fixing NifU domain protein; KEGG: ecn:Ecaj_0800 nitrogen-fixing NifU, C-terminal
YP_001309226.1	PFAM: acetyl-CoA hydrolase/transferase; KEGG: ctc:CTC00482 4-hydroxybutyrate coenzyme A transferase
YP_001309227.1	PFAM: beta-lactamase domain protein; KEGG: ssp:SSP0236 similar to quorum-quenching N-acyl homoserine lactonase
YP_001309228.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_1595 GCN5-related N-acetyltransferase
YP_001309229.1	catalyzes the formation of L-histidinol from L-histidinol phosphate
YP_001309230.1	PFAM: protein of unknown function DUF218; KEGG: cpf:CPF_1089 hypothetical protein
YP_001309231.1	PFAM: ArsR family transcriptional regulator; KEGG: lin:pli0036 similar to arsenical resistance operon repressor
YP_001309232.1	PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: dsy:DSY4151 hypothetical protein
YP_001309233.1	KEGG: dsy:DSY4598 hypothetical protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: ATPase AAA
YP_001309234.1	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cac:CA_P0105 arsenate reductase, ArsC, protein-tyrosine-phosphatase family enzyme
YP_001309235.1	TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cac:CA_P0104 heavy metal resistance membrane protein
YP_001309236.1	PFAM: Domain of unknown function DUF1883; KEGG: maq:Maqu_1263 TIR protein
YP_001309237.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_001309238.1	PFAM: DNA mismatch repair protein MutS domain protein; SMART: MutS III domain protein; KEGG: cac:CA_P0099 DNA mismatch repair protein, MutS fragment
YP_001309239.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cno:NT01CX_0501 fusion HD-GYP domain and HD-hydrolase domain
YP_001309240.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpr:CPR_0448 DNA-binding response regulator
YP_001309241.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cpe:CPE0458 two-component sensor histidine kinase
YP_001309243.1	KEGG: cpr:CPR_1393 hypothetical protein
YP_001309244.1	PFAM: alpha/beta hydrolase fold; KEGG: cac:CAC2246 lysophospholipase L2 PLDB, hydrolase of alpha/beta superfamily
YP_001309245.1	TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: cac:CAC0751  proton-dependent oligopeptide transporter
YP_001309246.1	KEGG: lip:LI0105 hypothetical protein
YP_001309247.1	KEGG: cth:Cthe_2170 hypothetical protein
YP_001309248.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bat:BAS0323 hypothetical protein
YP_001309249.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001309250.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: cac:CAC2978 Glu-tRNA amidotransferase, subunit C
YP_001309251.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001309252.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001309253.1	KEGG: pfa:PF07_0038 Cg7 protein
YP_001309254.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpf:CPF_0605 cell wall binding repeat protein/mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain
YP_001309255.1	PFAM: Ankyrin; KEGG: spu:577492 similar to ankyrin 2,3/unc44
YP_001309257.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bce:BC0376 alkyl hydroperoxide reductase subunit F
YP_001309258.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cth:Cthe_1965 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_001309259.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ana:all2613 transcriptional regulator
YP_001309260.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpe:CPE0570 hypothetical protein
YP_001309261.1	PFAM: periplasmic binding protein; KEGG: cpe:CPE0810 probable iron(III) dicitrate ABC transporter
YP_001309262.1	PFAM: transport system permease; KEGG: cpr:CPR_0795 iron compound ABC transporter permease
YP_001309263.1	PFAM: transport system permease; KEGG: cpe:CPE0812 probable ferrichrome ABC transporter
YP_001309264.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpf:CPF_0810  ferrichrome ABC transporter ATP-binding protein
YP_001309265.1	PFAM: major facilitator superfamily MFS_1; KEGG: btk:BT9727_2273 permease; possible macrolide-efflux protein
YP_001309266.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: cac:CAC2394 transcriptional regulator, LysR family
YP_001309267.1	PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC2393 uncharacterized ABC transporter ATPase component
YP_001309268.1	PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC2392 uncharacterized ABC transporter ATPase component
YP_001309269.1	PFAM: polysaccharide deacetylase; KEGG: cpf:CPF_0823 polysaccharide deacetylase family protein
YP_001309270.1	TIGRFAM: PAS sensor protein; PFAM: phosphocarrier HPr protein; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; ATPase AAA; KEGG: cpr:CPR_2353 phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator
YP_001309271.1	with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase
YP_001309272.1	TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: cno:NT01CX_0688 dihydroxyacetone kinase, L subunit
YP_001309273.1	TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; PFAM: PTS system fructose subfamily IIA component; KEGG: cno:NT01CX_0687 dihydroxyacetone kinase, phosphotransfer subunit
YP_001309274.1	KEGG: oih:OB0245 hypothetical protein
YP_001309275.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pca:Pcar_1087 NADH:flavin oxidoreductase, Old Yellow enzyme family
YP_001309276.1	PFAM: regulatory protein, MarR; KEGG: sfu:Sfum_1142 transcriptional regulator, MarR family
YP_001309277.1	TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cac:CAC3668 MDR-type permease
YP_001309279.1	PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; KEGG: bcl:ABC2709 DNA-directed DNA polymerase I
YP_001309280.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sat:SYN_00718 lactoylglutathione lyase
YP_001309281.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_0063 rubredoxin-type Fe(Cys)4 protein
YP_001309282.1	KEGG: pfa:PF11_0317 structural maintenance of chromosome protein
YP_001309283.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: swo:Swol_0601 signal transduction histidine kinase-like protein
YP_001309285.1	PFAM: helix-turn-helix domain protein; KEGG: chy:CHY_1862 DNA-binding protein
YP_001309288.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: gsu:GSU2929 hypothetical protein
YP_001309294.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; histidine kinase internal region; KEGG: dsy:DSY0460 hypothetical protein
YP_001309295.1	PFAM: response regulator receiver; KEGG: dsy:DSY0459 hypothetical protein
YP_001309296.1	PFAM: Septum formation topological specificity factor MinE; KEGG: cpr:CPR_2104 cell division topological specificity factor MinE
YP_001309297.1	PFAM: arsenate reductase and related; KEGG: ctc:CTC01181 arsenate reductase
YP_001309298.1	PFAM: helix-turn-helix- domain containing protein, AraC type; pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: dsy:DSY4310 hypothetical protein
YP_001309299.1	PFAM: protein of unknown function UPF0060; KEGG: cpr:CPR_1507 uncharacterized BCR, YnfA/UPF0060 family superfamily
YP_001309303.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: ATPase AAA; KEGG: cno:NT01CX_0469 signal-transduction and transcriptional-control protein
YP_001309304.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: cpf:CPF_1465 NADPH-dependent butanol dehydrogenase
YP_001309305.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cpf:CPF_1464 oxidoreductase, NAD-binding
YP_001309306.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_001309307.1	PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: dsy:DSY2436 hypothetical protein
YP_001309309.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01211 methyl-accepting chemotaxis protein TlpA
YP_001309311.1	KEGG: aci:ACIAD2621 tolerance to group A colicins, single-stranded filamentous DNA phage, required for OM integrity
YP_001309312.1	PFAM: nitroreductase; KEGG: bth:BT_1148  NADH dehydrogenase/NAD(P)H nitroreductase
YP_001309313.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cac:CAC1422 uncharacterized hypothetical protein, YUGS B.subtilis ortholog
YP_001309314.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: bha:BH2675 transcriptional regulator (RpiR family)
YP_001309315.1	similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate
YP_001309316.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: efa:EF3141 D-isomer specific 2-hydroxyacid dehydrogenase family protein
YP_001309317.1	PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: efa:EF3140 alcohol dehydrogenase, iron-containing
YP_001309318.1	PFAM: phosphotransferase system PTS, sorbose-specific IIC subunit; KEGG: efa:EF3139 PTS system, IIC component
YP_001309319.1	PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: efa:EF3138 PTS system, IID component
YP_001309320.1	PFAM: PTS system sorbose subfamily IIB component; KEGG: efa:EF3137 PTS system, IIB component
YP_001309322.1	PFAM: PTS system fructose subfamily IIA component; KEGG: efa:EF3136 PTS system, IIA component
YP_001309323.1	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate
YP_001309324.1	TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: efa:EF3134 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase
YP_001309325.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC3520 ABC-type transport system, ATPase component
YP_001309326.1	KEGG: cac:CAC3519 predicted membrane protein, possible permease
YP_001309327.1	PFAM: regulatory protein, TetR; KEGG: cac:CAC3518 transcriptional regulators, AcrR family
YP_001309328.1	PFAM: GntR family transcriptional regulator; aminotransferase, class I and II; KEGG: dvl:Dvul_0077  transcriptional regulator, GntR family
YP_001309329.1	PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: cac:CAC3526 FMN-binding protein
YP_001309330.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: ctc:CTC01638 pleiotropic regulatory protein
YP_001309331.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bat:BAS2069 acetyltransferase, GNAT family
YP_001309333.1	PFAM: helix-turn-helix, HxlR type; KEGG: llm:llmg_1903  transcriptional regulator
YP_001309334.1	PFAM: NADPH-dependent FMN reductase; KEGG: mac:MA1860 iron-sulfur flavoprotein
YP_001309335.1	PFAM: Integral membrane protein TerC; KEGG: lpn:lpg2189 drug efflux protein
YP_001309336.1	PFAM: peptidase M48, Ste24p; KEGG: dsy:DSY4533 hypothetical protein
YP_001309337.1	PFAM: helix-turn-helix domain protein; KEGG: cpf:CPF_0928 transcriptional regulator, Cro/CI family
YP_001309339.1	TIGRFAM: phage replisome organizer, KEGG: lmo:lmo2317 similar to protein gp49
YP_001309340.1	KEGG: bha:BH3541 hypothetical protein
YP_001309341.1	TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cac:CAC1941 transcription regulator AbrB
YP_001309342.1	TIGRFAM:  transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; Helix-turn-helix, type 11 domain protein; KEGG: bha:BH0656 hypothetical protein
YP_001309343.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpr:CPR_2544 MATE efflux family protein
YP_001309344.1	KEGG: chy:CHY_0145 hypothetical protein
YP_001309346.1	PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: cpr:CPR_1411 small, acid-soluble spore protein
YP_001309347.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: ctc:CTC00979 membrane spanning protein
YP_001309348.1	PFAM: transcriptional regulator TrmB; KEGG: bsu:BG12303 similar to cyclodextrin metabolism protein
YP_001309349.1	KEGG: bcl:ABC3181 hypothetical protein
YP_001309350.1	TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: cpf:CPF_1002 amidohydrolase family protein
YP_001309351.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_0631 enoyl-CoA hydratase/isomerase
YP_001309352.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mes:Meso_0481 enoyl-CoA hydratase/isomerase
YP_001309353.1	PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: bfs:BF1216  L-serine dehydratase
YP_001309354.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01881 methyl-accepting chemotaxis protein
YP_001309355.1	PFAM: bifunctional deaminase-reductase domain protein; KEGG: bsu:BG10035 similar to unknown proteins from B. subtilis
YP_001309358.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: ctc:pE88_11  RNA polymerase sigma factor
YP_001309359.1	TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cac:CAC3346 MDR-type permease
YP_001309360.1	PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: cac:CAC2569 NimC/NimA family protein
YP_001309361.1	PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; KEGG: mxa:MXAN_0409 cupin domain protein
YP_001309362.1	PFAM: helix-turn-helix, HxlR type; KEGG: spm:spyM18_2160 hypothetical protein
YP_001309363.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV676 dehydrogenase
YP_001309364.1	PFAM: helix-turn-helix, HxlR type; KEGG: cac:CAC0195 predicted transcriptional regulator
YP_001309365.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: cps:CPS_2465 hypothetical protein
YP_001309367.1	KEGG: bce:BC4829 ribosomal RNA adenine dimethylase
YP_001309368.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC00805 two-component response regulator
YP_001309369.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ctc:CTC00806 sensory transduction protein kinase
YP_001309370.1	PFAM: SNARE associated Golgi protein; KEGG: ctc:CTC01769 membrane spanning protein
YP_001309371.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC00805 two-component response regulator
YP_001309376.1	KEGG: cpr:CPR_1211 hypothetical protein
YP_001309377.1	PFAM: glycosyl transferase, family 28; KEGG: sth:STH2411 UDP-glucose:sterol glucosyltransferase
YP_001309378.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: tte:TTE1253 predicted hydrolase of the metallo-beta-lactamase superfamily
YP_001309380.1	PFAM: Lytic transglycosylase, catalytic
YP_001309381.1	KEGG: ctc:pE88_44 hypothetical protein
YP_001309382.1	PFAM: helix-turn-helix domain protein; KEGG: cpf:CPF_0928 transcriptional regulator, Cro/CI family
YP_001309385.1	TIGRFAM: phage replisome organizer, KEGG: lmo:lmo2317 similar to protein gp49
YP_001309386.1	KEGG: bha:BH3541 hypothetical protein
YP_001309387.1	TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cac:CAC3649 possible stage V sporulation protein T, transcriptional regulator AbrB homolog
YP_001309389.1	PFAM: BRO domain protein domain protein; KEGG: cth:Cthe_2462 BRO-like protein
YP_001309390.1	KEGG: chy:CHY_0145 hypothetical protein
YP_001309392.1	KEGG: cno:NT01CX_2185 hypothetical protein
YP_001309393.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_001309394.1	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: ctc:CTC01876 transcriptional regulatory protein
YP_001309395.1	KEGG: gka:GK0762 hypothetical protein
YP_001309396.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_3222 rubredoxin-type Fe(Cys)4 protein
YP_001309397.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_001309398.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: btk:BT9727_1331 nitric oxide dioxygenase
YP_001309399.1	PFAM: aldehyde dehydrogenase; KEGG: cpe:CPE2438 NADP-dependent glyceraldehyde-3-phosphate dehydrogenas
YP_001309400.1	TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: cac:CAC0587 flavodoxin
YP_001309401.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_001309403.1	PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: ctc:CTC00656 conserved protein (peptidoglycan binding)
YP_001309408.1	PFAM: restriction endonuclease; KEGG: cph:Cpha266_1614 restriction endonuclease
YP_001309411.1	PFAM: chloramphenicol acetyltransferase; KEGG: cac:CAC0235 chloramphenicol acetyltransferase
YP_001309417.1	KEGG: cpr:CPR_0832 hypothetical protein
YP_001309418.1	KEGG: cpe:CPE1288 hypothetical protein
YP_001309419.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: ctc:pE88_11  RNA polymerase sigma factor
YP_001309420.1	PFAM:  cell wall binding repeat-containing protein; cell wall hydrolase/autolysin; KEGG: ava:Ava_4396 peptidoglycan-binding domain 1
YP_001309421.1	KEGG: pfa:MAL13P1.202 hypothetical protein
YP_001309422.1	PFAM: phage integrase family protein; KEGG: tte:TTE2127 integrase
YP_001309423.1	KEGG: rme:Rmet_0127 cobalamin synthesis protein, P47K
YP_001309424.1	KEGG: ctc:CTC01538 hypothetical protein
YP_001309425.1	PFAM: anaerobic cobalt chelatase; KEGG: cpr:CPR_1242 anaerobic cobalt chelatase, CbiK
YP_001309426.1	responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid
YP_001309427.1	catalyzes the interconversion of precorrin-8X and cobyrinic acid
YP_001309428.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_001309429.1	TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cpf:CPF_1433 precorrin-6y C5,15-methyltransferase (decarboxylating)
YP_001309430.1	TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: conserved hypothetical protein 95; KEGG: cpf:CPF_1432 precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
YP_001309431.1	catalyzes the formation of precorrin-3A from precorrin-2
YP_001309432.1	TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ctc:CTC00736 precorrin-3 methylase
YP_001309433.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: cpe:CPE1221 precorrin methylase
YP_001309435.1	PFAM: GntR family transcriptional regulator; UbiC transcription regulator-associated domain protein; KEGG: lpl:lp_2924 transcription regulator
YP_001309436.1	TIGRFAM: PTS system, trehalose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: lmo:lmo1255 similar to PTS system trehalose specific enzyme IIBC
YP_001309437.1	TIGRFAM: alpha,alpha-phosphotrehalase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: cpe:CPE0562 trehalose-6-phosphate hydrolase
YP_001309438.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: cac:CAC3602 HD superfamily hydrolase
YP_001309439.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cpr:CPR_0856 acetyltransferase, GNAT family
YP_001309440.1	PFAM: protein of unknown function DUF1540; KEGG: cpr:CPR_2328 hypothetical protein
YP_001309441.1	PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cpe:CPE2618 hypothetical protein
YP_001309442.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: smu:SMU.1254 conserved hypothetical protein
YP_001309443.1	KEGG: cpr:CPR_2639 hypothetical protein
YP_001309444.1	PFAM: LysR family transcriptional regulator; KEGG: swo:Swol_0935 LysR-type transcriptional regulator
YP_001309445.1	PFAM: Methionine synthase, vitamin-B12 independent; KEGG: eca:ECA1113 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
YP_001309446.1	PFAM: Methionine synthase, vitamin-B12 independent; KEGG: dsy:DSY3878 hypothetical protein
YP_001309447.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sat:SYN_01581 endonuclease/exonuclease/phosphatase family protein
YP_001309448.1	PFAM: 3D domain protein
YP_001309449.1	PFAM: RelA/SpoT domain protein; KEGG: cac:CAC3340 uncharacterized conserved domain seen in the bacterial SpoT
YP_001309450.1	PFAM: nitroreductase; KEGG: sat:SYN_01293 oxygen-insensitive NAD(P)H nitroreductase / dihydropteridine reductase
YP_001309451.1	PFAM: Heavy metal transport/detoxification protein; KEGG: cpf:CPF_1453 heavy-metal-associated domain protein
YP_001309452.1	PFAM: protein of unknown function UPF0047; KEGG: cpf:CPF_0551 conserved hypothetical protein TIGR00149
YP_001309453.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_2017 choline binding protein A
YP_001309454.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cth:Cthe_3118 hemerythrin-like metal-binding protein
YP_001309455.1	PFAM: phosphoesterase, PA-phosphatase related; KEGG: cpr:CPR_1102 probable phosphatase
YP_001309456.1	KEGG: lic:LIC13297 hypothetical protein
YP_001309458.1	catalyzes the formation of fumarate from aspartate
YP_001309459.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: lbu:LBUL_0439 transcriptional regulator
YP_001309461.1	PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: sth:STH1431 small acid-soluble spore protein
YP_001309466.1	PFAM: polysaccharide deacetylase; KEGG: cpr:CPR_0367 predicted xylanase/chitin deacetilase
YP_001309467.1	ACT domain-containing protein
YP_001309468.1	PFAM: protein of unknown function DUF711; KEGG: lin:lin0538 similar to unknown proteins
YP_001309469.1	PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cpe:CPE1196 hypothetical protein
YP_001309470.1	PFAM: Auxin Efflux Carrier; KEGG: blo:BL0281 hypothetical protein
YP_001309471.1	TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cth:Cthe_0458 exodeoxyribonuclease III Xth
YP_001309472.1	PFAM: protein of unknown function DUF624; KEGG: rle:pRL120660  transmembrane protein
YP_001309473.1	PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH0905 L-arabinose transport system substrate-binding protein
YP_001309474.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi03023 L-arabinose transport (integral membrane protein); RBL00917
YP_001309475.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BG11912 L-arabinose transport system permease
YP_001309476.1	PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: cth:Cthe_2548 alpha-N-arabinofuranosidase
YP_001309477.1	PFAM: ArsR family transcriptional regulator; Helix-turn-helix, type 11 domain protein; KEGG: bha:BH1869 hypothetical protein
YP_001309478.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bcl:ABC1211 transcriptional regulator, AraC/XylS family
YP_001309479.1	PFAM: protein of unknown function DUF1680; KEGG: bcl:ABC1212 hypothetical protein
YP_001309480.1	PFAM: 3-dehydroquinate synthase; KEGG: bha:BH1862 L-arabinose utilization protein
YP_001309481.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fnu:FN1255 nagD protein
YP_001309482.1	PFAM: NUDIX hydrolase; KEGG: cpf:CPF_0882 pyrophosphatase, MutT/NUDIX family
YP_001309483.1	TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase; KEGG: bat:BAS2602 ribose 5-phosphate isomerase
YP_001309484.1	PFAM: GCN5-related N-acetyltransferase; KEGG: mba:Mbar_A3286 acetyltransferase, GNAT family
YP_001309485.1	SMART: ATPase AAA; KEGG: dsy:DSY3658 hypothetical protein
YP_001309486.1	KEGG: cac:CAC0369 predicted acetyltransferase
YP_001309488.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: hhe:HH1468 4-carboxymuconolactone decarboxylase
YP_001309489.1	PFAM: regulatory protein, MerR; KEGG: lin:lin0806 hypothetical protein
YP_001309490.1	KEGG: cac:CAC0722 predicted membrane protein; CF-9 family
YP_001309491.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: bsu:BG12123 transcriptional regulator (Lrp family)
YP_001309492.1	PFAM: isochorismatase hydrolase; KEGG: gsu:GSU0569 isochorismatase family protein
YP_001309493.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bha:BH3840 sugar ABC transporter (sugar-binding protein)
YP_001309494.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase internal region; KEGG: tte:TTE0287 predicted ATPase
YP_001309495.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: tte:TTE0288 CheY-like receiver domains
YP_001309496.1	TIGRFAM: D-xylose ABC transporter periplasmic protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: mta:Moth_2022 periplasmic binding protein/LacI transcriptional regulator
YP_001309497.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ecv:APECO1_2882 ABC-type xylose transport system, ATPase component XylG
YP_001309498.1	PFAM: inner-membrane translocator; KEGG: mta:Moth_2020 inner-membrane translocator
YP_001309499.1	TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bca:BCE_2210 xylose isomerase
YP_001309500.1	TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: cac:CAC2612 xylulose kinase
YP_001309501.1	PFAM: ROK family protein; KEGG: cac:CAC3673 XylR transcriptional regulator
YP_001309502.1	TIGRFAM:  transaldolase; PFAM: Transaldolase; KEGG: lwe:lwe2691 transaldolase
YP_001309503.1	TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: cac:CAC1348 transketolase, TKT
YP_001309504.1	KEGG: cac:CAC2611 hypothetical protein
YP_001309505.1	KEGG: cac:CAC2610 L-fucose isomerase related protein
YP_001309506.1	PFAM: GntR family transcriptional regulator; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: mta:Moth_0073 transcriptional regulator, GntR family
YP_001309507.1	PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: cac:CAC0111 glutamine-binding periplasmic protein fused to glutamine permease
YP_001309508.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC0112 glutamine ABC transporter (ATP-binding protein)
YP_001309509.1	TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; KEGG: hhe:HH0662 L-asparaginase
YP_001309510.1	KEGG: ctc:CTC01798 hypothetical protein
YP_001309511.1	PFAM: peptidase M19, renal dipeptidase; KEGG: cpf:CPF_2183 dipeptidase family protein
YP_001309512.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001309513.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cpr:CPR_1892 sensor histidine kinase
YP_001309514.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_2180 DNA-binding response regulator
YP_001309515.1	PFAM: peptidase M16 domain protein; KEGG: cno:NT01CX_1702 peptidase, M16 family
YP_001309516.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_001309517.1	PFAM: transglutaminase domain protein; KEGG: cac:CAC2409 transglutaminase-like enzyme,  cysteine protease
YP_001309518.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: ctc:CTC02335 hypothetical protein
YP_001309519.1	TIGRFAM:  CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cth:Cthe_1329  CoA-substrate-specific enzyme activase
YP_001309520.1	KEGG: ctc:CTC00791 hypothetical protein
YP_001309521.1	KEGG: ctc:CTC00792 hypothetical protein
YP_001309523.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: cpr:CPR_1317 hypothetical protein
YP_001309524.1	TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: cac:CAC0587 flavodoxin
YP_001309525.1	KEGG: cpr:CPR_0610 hypothetical protein
YP_001309526.1	PFAM: NUDIX hydrolase; KEGG: cpf:CPF_0794 hydrolase, NUDIX family
YP_001309527.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cac:CAC1611 probable cation efflux pump (multidrug resistance protein)
YP_001309528.1	PFAM: UV-endonuclease UvdE; KEGG: cth:Cthe_1958 UV-endonuclease UvdE
YP_001309529.1	PFAM:  cell wall binding repeat-containing protein; SMART: transglutaminase domain protein; KEGG: bca:BCE_1072 S-layer protein
YP_001309530.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_001309531.1	PFAM: protein of unknown function UPF0118; KEGG: cpr:CPR_0707 probable permease
YP_001309532.1	PFAM: Ppx/GppA phosphatase; KEGG: cac:CAC0621 exopolyphosphatase
YP_001309533.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_001309534.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpe:CPE0570 hypothetical protein
YP_001309535.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: ctc:CTC00408 NADH-dependent butanol dehydrogenase A
YP_001309536.1	PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: cpe:CPE2462 probable microcin immunity protein
YP_001309537.1	KEGG: tde:TDE2076 hypothetical protein
YP_001309538.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: tde:TDE2075 GGDEF domain/EAL domain protein
YP_001309539.1	PFAM: protein of unknown function DUF342; KEGG: cac:CAC2225 hypothetical protein
YP_001309540.1	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: cpr:CPR_0384 xanthine permease
YP_001309541.1	Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine
YP_001309542.1	catalyzes the release of the N-terminal amino acid from a tripeptide
YP_001309544.1	PFAM: helicase domain protein; KEGG: cac:CAC0778 ATP-dependent RNA helicase, superfamily II
YP_001309545.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY3619 hypothetical protein
YP_001309546.1	Catalyzes the formation of PRPP from ATP and ribose 5-phosphate
YP_001309548.1	PFAM: NLP/P60 protein; KEGG: ctc:CTC00227  cell wall-associated hydrolase
YP_001309549.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cac:CAC0903 sensory transduction histidine kinase
YP_001309550.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cac:CAC0749 HD hydrolase superfamily protein
YP_001309551.1	PFAM: protein of unknown function DUF503; KEGG: cac:CAC0740 uncharacterized conserved protein, YlxP family
YP_001309552.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_001309553.1	PFAM: cytochrome b5; KEGG: bur:Bcep18194_A5862 hypothetical protein
YP_001309554.1	KEGG: bcl:ABC3324 hypothetical protein
YP_001309555.1	PFAM: NUDIX hydrolase; KEGG: cpf:CPF_0662 hydrolase, NUDIX family
YP_001309556.1	PFAM: Phosphoesterase, HXTX; KEGG: cac:CAC1603 diverged enzyme related to 2'-5' RNA ligase, ortholog YJCG B.subtilis
YP_001309557.1	PFAM: YibE/F family protein; KEGG: cac:CAC0889 hypothetical protein
YP_001309558.1	PFAM: YibE/F family protein; KEGG: cac:CAC0890 uncharacterized conserved membrane protein
YP_001309559.1	KEGG: lac:LBA1611 surface protein
YP_001309560.1	catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway
YP_001309561.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ssp:SSP0387  acetyltransferase
YP_001309562.1	PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: cno:NT01CX_0096 positive regulator of sigma(E), RseC/MucC superfamily
YP_001309563.1	TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: tma:TM0244 electron transport complex protein
YP_001309564.1	TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: sat:SYN_01663 sodium-translocating NADH-quinone reductase subunit B
YP_001309565.1	TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: cno:NT01CX_1581 RnfG/NqrC
YP_001309566.1	PFAM: RnfA-Nqr electron transport subunit; KEGG: pca:Pcar_0260 NADH-ubiquinone oxidoreductase
YP_001309567.1	PFAM: RnfA-Nqr electron transport subunit; KEGG: yps:YPTB2167  membrane protein
YP_001309568.1	TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: sat:SYN_00628 sodium-translocating NADH-quinone reductase, subunit
YP_001309569.1	PFAM: Heptaprenyl diphosphate synthase component I; KEGG: cpf:CPF_2488 hypothetical protein
YP_001309570.1	PFAM: protein of unknown function DUF1312; KEGG: cno:NT01CX_0721 hypothetical protein
YP_001309571.1	PFAM: LacI family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; KEGG: cac:CAC0693 transcriptional regulator of the LacI family
YP_001309572.1	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
YP_001309573.1	transports degraded pectin products into the bacterial cell
YP_001309574.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; Cache domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: chy:CHY_1906 sensory box/GGDEF domain/EAL domain protein
YP_001309575.1	this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress
YP_001309576.1	PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: bce:BC2482 hypothetical cytosolic protein
YP_001309577.1	PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: ctc:CTC00941 cobalamin synthesis protein CobW
YP_001309578.1	KEGG: cpr:CPR_0043 hypothetical protein
YP_001309579.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: cpe:CPE0820 conserved hypothetical protein
YP_001309580.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: oih:OB2808 transcriptional repressor of phosphotransferase system
YP_001309581.1	PFAM: fructose-1,6-bisphosphatase; KEGG: cac:CAC1572 fructose-1,6-bisphosphatase
YP_001309582.1	TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: ter:Tery_5016 glycogen debranching enzyme GlgX
YP_001309583.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpe:CPE0626 hypothetical protein
YP_001309584.1	PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: cac:CAC1522 small acid-soluble spore protein
YP_001309585.1	PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: cac:CAC2365 small acid-soluble spore protein
YP_001309586.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: bce:BC1957 two component system histidine kinase
YP_001309587.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: lme:LEUM_0956 DNA-binding response regulator, OmpR family (Rec-wHTH domains)
YP_001309588.1	PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro05404 transcriptional regulator, TetR family
YP_001309589.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_0308 secretion protein HlyD
YP_001309590.1	PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_0763 acriflavin resistance protein
YP_001309591.1	KEGG: cth:Cthe_1764 outer membrane protein-like protein
YP_001309592.1	PFAM: regulatory protein, TetR; KEGG: mst:Msp_0717 predicted transcriptional regulator
YP_001309593.1	KEGG: cno:NT01CX_1041 hypothetical protein
YP_001309594.1	PFAM: glycoside hydrolase, family 25; cell wall binding repeat-containing protein; KEGG: cpf:CPF_0550 cell wall binding repeat domain protein
YP_001309596.1	KEGG: btl:BALH_1746 hypothetical protein
YP_001309597.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: btk:BT9727_1806 alkaline phosphatase synthesis response regulator
YP_001309598.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: bcz:BCZK1790 sensor histidine kinase
YP_001309599.1	PFAM: ribonuclease H; KEGG: hdu:HD1206 ribonuclease H
YP_001309600.1	PFAM: SEC-C motif domain protein; KEGG: sto:ST1780 hypothetical protein
YP_001309601.1	KEGG: eci:UTI89_C4721 hypothetical protein
YP_001309602.1	PFAM: protein of unknown function DUF523; KEGG: bld:BLi00192 YbbK
YP_001309603.1	PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cpr:CPR_0682 rubredoxin/rubrerythrin
YP_001309604.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; KEGG: cno:NT01CX_2348 sensory box/GGDEF family protein
YP_001309605.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mla:Mlab_0278 hypothetical protein
YP_001309606.1	KEGG: fnu:FN1165 D-galactose-binding protein
YP_001309607.1	KEGG: cac:CAC0769 hypothetical protein
YP_001309608.1	PFAM: CutC family protein; KEGG: cpf:CPF_0254 CutC family protein
YP_001309609.1	PFAM: sigma-54 factor, interaction domain-containing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PTS system fructose subfamily IIA component; PRD domain protein; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: tte:TTE0180 NtrC family transcriptional regulator, ATPase domain
YP_001309610.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: tte:TTE0181 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
YP_001309611.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: bcl:ABC3346 PTS system, galactitol-specific enzyme II, B component
YP_001309612.1	PFAM: PTS system Galactitol-specific IIC component; KEGG: lwe:lwe2614 PTS system, galactitol-specific, IIC component
YP_001309613.1	PFAM: 3-dehydroquinate synthase; KEGG: bha:BH1862 L-arabinose utilization protein
YP_001309614.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fnu:FN1255 nagD protein
YP_001309615.1	PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: pac:PPA2315 probable glycerol-3-phosphate dehydrogenase [NAD(P)+]
YP_001309616.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cth:Cthe_0511 histidine kinase
YP_001309617.1	KEGG: cpe:CPE1341 probable galactoside ABC transporter
YP_001309619.1	KEGG: tte:TTE2242 transposase
YP_001309620.1	PFAM: protein of unknown function UPF0061; KEGG: gka:GK0436 hypothetical protein
YP_001309621.1	PFAM: 3D domain protein; KEGG: cno:NT01CX_0685 hypothetical protein
YP_001309622.1	TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY4690 hypothetical protein
YP_001309623.1	TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY4689 hypothetical protein
YP_001309624.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY4688 hypothetical protein
YP_001309625.1	PFAM: extracellular solute-binding protein, family 3; KEGG: dsy:DSY4687 hypothetical protein
YP_001309626.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dsy:DSY1899 hypothetical protein
YP_001309627.1	KEGG: swo:Swol_0601 signal transduction histidine kinase-like protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; GAF domain protein
YP_001309628.1	PFAM: response regulator receiver; KEGG: ctc:CTC01729 chemotaxis protein cheY
YP_001309629.1	KEGG: mba:Mbar_A0144 conserved membrane protein, predicted permease
YP_001309630.1	KEGG: rru:Rru_A0914 aldehyde dehydrogenase
YP_001309631.1	KEGG: cpe:CPE1360 hypothetical protein
YP_001309632.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cac:CAC3354 probable cation efflux pump (multidrug resistance protein)
YP_001309633.1	PFAM: helix-turn-helix, Fis-type; Propionate catabolism activator domain protein; KEGG: oih:OB1010 sigma-L-dependent transcriptional regulator
YP_001309634.1	TIGRFAM: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent; KEGG: pcu:pc0111  ribonucleoside triphosphate reductase
YP_001309635.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: mmp:MMP0078 hypothetical protein
YP_001309636.1	TIGRFAM: Cof-like hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: cpr:CPR_0492 HAD hydrolase, IIB family
YP_001309637.1	PFAM: 3D domain protein; KEGG: bcl:ABC1928 peptidoglycan-binding domain-containing protein
YP_001309638.1	KEGG: bha:BH1562 hypothetical protein
YP_001309639.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; domain of unknown function DUF1745; KEGG: tdn:Tmden_0380 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
YP_001309640.1	KEGG: dsy:DSY1535 hypothetical protein
YP_001309641.1	PFAM: protein of unknown function UPF0126; KEGG: lla:L169795 hypothetical protein
YP_001309642.1	TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA, central domain protein; SMART: ATPase AAA; KEGG: ctc:CTC00531 ATP-dependent zinc metallopeptidase
YP_001309643.1	PFAM: GtrA family protein; KEGG: sep:SE1997 hypothetical protein
YP_001309644.1	PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: bld:BLi01397 YkfA
YP_001309645.1	PFAM: NLP/P60 protein; KEGG: lbu:LBUL_1667 cell wall-associated hydrolase
YP_001309646.1	PFAM: FeoA family protein; KEGG: cno:NT01CX_1592 ferrous iron transport protein A
YP_001309647.1	TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: cpr:CPR_1631 ferrous iron transport protein B
YP_001309648.1	PFAM: membrane-bound metal-dependent hydrolase; KEGG: lsl:LSL_1368 hypothetical membrane spanning protein
YP_001309649.1	KEGG: gka:GK2460 hypothetical protein
YP_001309650.1	KEGG: cno:NT01CX_2384 6-pyruvoyl tetrahydrobiopterin synthase
YP_001309651.1	PFAM: Radical SAM domain protein; KEGG: cno:NT01CX_2385 Fe-S oxidoreductase of MoaA family CAC3625
YP_001309652.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_001309653.1	TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: btl:BALH_1202 possible aluminum resistance protein
YP_001309654.1	NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis
YP_001309655.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cpr:CPR_1150 probable flavoprotein, YhiN family
YP_001309656.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_001309657.1	these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_001309658.1	PFAM: NUDIX hydrolase; KEGG: cac:CAC3601 NUDIX (MutT) family hydrolase
YP_001309659.1	PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: cpf:CPF_2907 xanthine/uracil permease family protein
YP_001309660.1	PFAM: protein of unknown function DUF815; KEGG: cth:Cthe_0284 protein of unknown function DUF815
YP_001309661.1	PFAM: Ferritin, Dps family protein; KEGG: cpf:CPF_1236 ferritin family protein
YP_001309662.1	PFAM: pentapeptide repeat protein; KEGG: cac:CAC0783 uncharacterized low-complexity protein
YP_001309664.1	KEGG: cac:CAC2790 hypothetical protein
YP_001309666.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC1840 predicted acetyltransferase domain containing protein
YP_001309667.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_001309668.1	TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: cpr:CPR_1356 YbaK/EbsC protein
YP_001309669.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_001309670.1	KEGG: rno:679128 hypothetical protein LOC679128
YP_001309671.1	KEGG: cpr:CPR_1178 hypothetical protein
YP_001309672.1	KEGG: cac:CAC2110 GAF domain-containing protein
YP_001309673.1	Represses a number of genes involved in the response to DNA damage
YP_001309674.1	PFAM: Aluminium resistance family protein; KEGG: cac:CAC1833 cystathionine beta-lyase family protein, YNBB B.subtilis ortholog
YP_001309675.1	TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: cac:CAC1834 host factor I protein Hfq
YP_001309676.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_001309677.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_001309678.1	KEGG: cpr:CPR_1122 hypothetical protein
YP_001309679.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_001309680.1	PFAM: pentapeptide repeat protein; KEGG: cac:CAC0073 uncharacterized protein, ortholog of YYBG B.subtilis
YP_001309681.1	This protein performs the mismatch recognition step during the DNA repair process
YP_001309682.1	KEGG: sak:SAK_1912 hypothetical protein
YP_001309684.1	PFAM: aldehyde dehydrogenase; KEGG: cpf:CPF_2748 glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent
YP_001309685.1	PFAM: conserved hypothetical protein 245; KEGG: baa:BA_0048  ABC transport system permease
YP_001309686.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bca:BCE_5078 ABC transporter ATP-binding protein
YP_001309687.1	TIGRFAM: LexA repressor; PFAM: peptidase S24, S26A and S26B; KEGG: cac:CAC1793 P-loop ATPase domain fused to LexA-like protein
YP_001309688.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: cac:CAC2244 HAD superfamily hydrolases, YkrA B.subtilis ortholog
YP_001309689.1	KEGG: pfa:PF14_0302 hypothetical protein
YP_001309690.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cpf:CPF_0482 dTDP-glucose 4,6-dehydratase
YP_001309691.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cpf:CPF_0599 dTDP-4-dehydrorhamnose reductase
YP_001309692.1	KEGG: mma:MM0214 hypothetical protein
YP_001309693.1	KEGG: cac:CAC2352 hypothetical protein
YP_001309694.1	KEGG: tte:TTE1676 hypothetical protein
YP_001309695.1	KEGG: cth:Cthe_1088 hypothetical protein
YP_001309697.1	PFAM: glycosyl transferase, group 1; KEGG: cno:NT01CX_1800 glycosyltransferase
YP_001309698.1	PFAM: glycosyl transferase, family 2; Methyltransferase type 11; KEGG: cac:CAC2347 glycosyltransferase
YP_001309699.1	PFAM: Collagen triple helix repeat; KEGG: bcl:ABC0473 hypothetical protein
YP_001309700.1	PFAM: Collagen triple helix repeat; KEGG: mlo:mlr0587 hypothetical glycine-rich protein
YP_001309701.1	PFAM: glycosyl transferase, family 2; TPR repeat-containing protein; KEGG: dsy:DSY4437 hypothetical protein
YP_001309702.1	KEGG: chu:CHU_0854 capsular polysaccharide biosynthesis protein
YP_001309703.1	PFAM: glycosyl transferase, family 2; KEGG: chy:CHY_0980 glycosyl transferase, group 2 family
YP_001309704.1	KEGG: sit:TM1040_3425 hypothetical protein
YP_001309705.1	KEGG: azo:azo2678 conserved hypothetical protein
YP_001309706.1	KEGG: xom:XOO_2848 hypothetical protein
YP_001309708.1	PFAM: WxcM domain protein, C-terminal domain protein; KEGG: dsy:DSY3318 hypothetical protein
YP_001309709.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gme:Gmet_1325 DegT/DnrJ/EryC1/StrS aminotransferase
YP_001309710.1	PFAM: amine oxidase; KEGG: ter:Tery_1366 amine oxidase
YP_001309711.1	TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; KEGG: cac:CAC2354 NifS family aminotransferase
YP_001309712.1	KEGG: cth:Cthe_1088 hypothetical protein
YP_001309713.1	TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: cpf:CPF_0598 dTDP-4-dehydrorhamnose 3,5-epimerase
YP_001309714.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cpf:CPF_0597 glucose-1-phosphate thymidylyltransferase
YP_001309715.1	PFAM: Collagen triple helix repeat; KEGG: btl:BALH_1312 collagen-like protein
YP_001309716.1	PFAM: glycosyl transferase, family 2; KEGG: mst:Msp_0493 predicted glycosyltransferase
YP_001309720.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_001309721.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_001309722.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_001309723.1	KEGG: cno:NT01CX_1070 hypothetical protein
YP_001309727.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: ctc:pE88_11  RNA polymerase sigma factor
YP_001309732.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cac:CAC2574 predicted S-adenosylmethionine-dependent methyltransferase
YP_001309733.1	KEGG: cth:Cthe_1520 hypothetical protein
YP_001309734.1	KEGG: bth:BT_4528 hypothetical protein
YP_001309736.1	PFAM: Endonuclease V; KEGG: btk:BT9727_3063 deoxyinosine 3'endonuclease (endonuclease V)
YP_001309737.1	KEGG: btk:BT9727_3064 hypothetical protein
YP_001309738.1	KEGG: mxa:MXAN_4193 hypothetical protein
YP_001309741.1	KEGG: cac:CAC3701 hypothetical protein, CF-44 family
YP_001309743.1	KEGG: bat:BAS2050 hypothetical protein
YP_001309744.1	KEGG: cac:CAC2030 hypothetical protein
YP_001309745.1	KEGG: lin:lin0059 hypothetical protein
YP_001309748.1	PFAM: pentapeptide repeat protein; KEGG: btk:BT9727_0977 conserved hypothetical protein, possible quinolone resistance protein
YP_001309751.1	PFAM: phage integrase family protein; KEGG: chy:CHY_1702 prophage LambdaCh01, site-specific recombinase, phage integrase family
YP_001309752.1	PFAM: MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter
YP_001309753.1	PFAM: SNF2-related protein; helicase domain protein; type III restriction protein, res subunit; zinc finger, SWIM domain protein; SNF2 helicase associated domain protein; SMART: DEAD-like helicases-like; KEGG: cpe:CPE1625 SWI/SNF family helicase
YP_001309754.1	KEGG: cno:NT01CX_0981 hypothetical protein
YP_001309755.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpf:CPF_2868 ABC transporter ATP-binding protein
YP_001309756.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein, central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: azo:azo1034 acetolactate synthase
YP_001309757.1	TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: dar:Daro_1619 amino acid-binding ACT
YP_001309759.1	PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: cac:CAC0200 uncharacterized membrane protein
YP_001309760.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC1535 ABC transporter ATPase component
YP_001309761.1	PFAM: protein of unknown function DUF214; KEGG: cac:CAC1534 predicted permease
YP_001309762.1	TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: cno:NT01CX_0277 butyrate-acetoacetate CoA-transferase subunit B
YP_001309763.1	TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: cno:NT01CX_0278 acetate CoA-transferase alpha subunit
YP_001309764.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cbu:CBU_1364 hypothetical protein
YP_001309765.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: lwe:lwe0003 MATE efflux family protein
YP_001309766.1	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein; KEGG: lwe:lwe2180 transcriptional regulator, AraC family
YP_001309767.1	KEGG: ctc:CTC00651 hypothetical protein
YP_001309768.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: tte:TTE0052 16S rRNA uridine-516 pseudouridylate synthase and related Pseudouridylate synthase
YP_001309769.1	PFAM: protein of unknown function DUF871; KEGG: bce:BC0805 outer surface protein
YP_001309770.1	KEGG: cth:Cthe_0634 serine/threonine protein kinase
YP_001309771.1	PFAM: cell wall hydrolase/autolysin; KEGG: cth:Cthe_0185 cell wall hydrolase/autolysin
YP_001309772.1	PFAM: phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit; KEGG: sha:SH0190 hypothetical protein
YP_001309773.1	PFAM: glycoside hydrolase, family 4; KEGG: tte:TTE0337 Alpha-galactosidases/6-phospho-beta- glucosidases, family 4 of glycosyl hydrolases
YP_001309774.1	TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system, EIIC; KEGG: sha:SH0189 hypothetical protein
YP_001309775.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: sha:SH0188 hypothetical protein
YP_001309776.1	PFAM: fatty acid desaturase; KEGG: bca:BCE_0466 fatty acid desaturase
YP_001309777.1	KEGG: cac:CAC2041 ABC transported MDR-type, permease component
YP_001309778.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bcz:BCZK0256 bacitracin ABC transporter ATP-binding protein
YP_001309779.1	KEGG: mlo:mll0592 hypothetical protein
YP_001309780.1	PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SNF2 helicase associated domain protein; SMART: DEAD-like helicases-like; KEGG: ctc:CTC01850 SWF/SNF family helicase
YP_001309783.1	PFAM: ribosomal protein S21; KEGG: cac:CAC1288 30S ribosomal protein S21
YP_001309784.1	PFAM: coagulation factor 5/8 type domain protein; KEGG: sco:SCO0545 secreted protein
YP_001309785.1	PFAM: aldo/keto reductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mmp:MMP0208 hypothetical protein
YP_001309786.1	KEGG: cpe:CPE1443 hypothetical protein
YP_001309787.1	PFAM: Pirin domain protein; KEGG: cac:CAC1492 uncharacterized protein, YhhW/pirin family
YP_001309788.1	KEGG: swo:Swol_1911 hypothetical protein
YP_001309789.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cac:CAC3306 thiol peroxidase, TPX
YP_001309790.1	TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tte:TTE2220 thioredoxin reductase
YP_001309792.1	KEGG: cac:CAC3022 alpha/beta superfamily hydrolase
YP_001309793.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: tde:TDE1291 HD domain protein
YP_001309794.1	PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein
YP_001309795.1	PFAM: regulatory protein, MerR; transcription activator, effector binding; KEGG: bce:BC3486 transcriptional regulator, MerR family
YP_001309796.1	PFAM: GCN5-related N-acetyltransferase; KEGG: mba:Mbar_A2328 hypothetical protein
YP_001309797.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ser:SERP0994 acetyltransferase, GNAT family
YP_001309798.1	KEGG: cac:CAC0159 hypothetical protein
YP_001309799.1	PFAM: GCN5-related N-acetyltransferase
YP_001309800.1	PFAM: homocysteine S-methyltransferase; KEGG: bth:BT_1409 hypothetical protein
YP_001309802.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mba:Mbar_A0557 haloacid dehalogenase-like hydrolase family protein
YP_001309804.1	KEGG: mba:Mbar_A2331 hypothetical protein
YP_001309805.1	KEGG: ljo:LJ1221 hypothetical protein
YP_001309806.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: tde:TDE1774 hypothetical protein
YP_001309807.1	KEGG: pfa:PF14_0250 hypothetical protein
YP_001309808.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ctc:CTC00553 RNA polymerase sigma factor
YP_001309809.1	PFAM:  cell wall binding repeat-containing protein; copper amine oxidase domain protein; KEGG: cpf:CPF_0550 cell wall binding repeat domain protein
YP_001309810.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein
YP_001309811.1	PFAM: acriflavin resistance protein; KEGG: chu:CHU_2809 cation efflux protein
YP_001309812.1	PFAM: RDD domain containing protein
YP_001309813.1	PFAM: aminotransferase, class I and II; KEGG: efa:EF0029 aminotransferase, class II
YP_001309814.1	PFAM: creatinase; peptidase M24; KEGG: ser:SERP1094 proline dipeptidase
YP_001309815.1	TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system, EIIC; KEGG: lmf:LMOf2365_0895 PTS system, beta-glucoside-specific, IIC component
YP_001309816.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: lin:lin0873 similar to PTS system, beta-glucoside enzyme IIB component
YP_001309817.1	PFAM: phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit; KEGG: vfi:VF0607 PTS system, diacetylchitobiose-specific IIA component
YP_001309818.1	metalloprotein
YP_001309819.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PRD domain protein; Helix-turn-helix, type 11 domain protein; KEGG: btl:BALH_0718 transcription antiterminator, BglG family
YP_001309820.1	KEGG: cpr:CPR_0878 FliB family protein
YP_001309821.1	KEGG: cac:CAC1028 hydrolase of alpha/beta superfamily, possible membrane associated lipase
YP_001309822.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: syg:sync_2670 antibiotic biosynthesis monooxygenase
YP_001309824.1	PFAM: transcription activator, effector binding; KEGG: cac:CAC3490 DNA gyrase inhibitory protein, GyrI
YP_001309825.1	KEGG: fnu:FN0643 hypothetical protein
YP_001309826.1	KEGG: smu:SMU.1470c hypothetical protein
YP_001309827.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cpr:CPR_2063 polyferredoxin
YP_001309828.1	PFAM: regulatory protein, MerR; KEGG: gka:GK3095 transcriptional regulator involved in mercury resistance operon
YP_001309829.1	PFAM: protein of unknown function DUF1232; KEGG: cac:CAC1011 uncharacterized small membrane protein, homolog of ykvA B.subtilis
YP_001309830.1	PFAM: helix-turn-helix domain protein; KEGG: ctc:CTC00641 transcriptional regulatory protein
YP_001309831.1	KEGG: bcz:BCZK0951 ATP-dependent DNA helicase replicase
YP_001309832.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; KEGG: ana:all0637 two-component hybrid sensor and regulator
YP_001309833.1	PFAM: response regulator receiver; KEGG: vch:VC1087 response regulator
YP_001309834.1	PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; KEGG: dvl:Dvul_2652 response regulator receiver modulated metal dependent phosphohydrolase
YP_001309835.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: hch:HCH_00674 signal transduction histidine kinase
YP_001309836.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: pna:Pnap_2188 carboxymuconolactone decarboxylase
YP_001309837.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein, central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bcl:ABC2009 acetolactate synthase large subunit
YP_001309838.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cno:NT01CX_0026 2,4-dienoyl-CoA reductase
YP_001309839.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cth:Cthe_0511 histidine kinase
YP_001309840.1	KEGG: cpf:CPF_0713 hypothetical protein
YP_001309841.1	PFAM: helix-turn-helix, HxlR type; KEGG: bld:BLi00585 hypothetical protein
YP_001309842.1	PFAM: NADPH-dependent FMN reductase; KEGG: mma:MM3119 iron-sulfur flavoprotein
YP_001309843.1	TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: bsu:BG14098 monovalent cation:proton antiporter
YP_001309844.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_001309845.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; M trans-acting positive regulator; PRD domain protein; Helix-turn-helix, type 11 domain protein; KEGG: tte:TTE0303 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
YP_001309846.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_001309847.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: spb:M28_Spy1651 PTS system, IIB component
YP_001309848.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: tte:TTE0303 phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
YP_001309849.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_001309850.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dra:DR0188 hypothetical protein
YP_001309852.1	PFAM: zinc finger, SWIM domain protein
YP_001309853.1	PFAM: VWA containing CoxE family protein; KEGG: lil:LA0697 hypothetical protein
YP_001309854.1	KEGG: lil:LA0699 hypothetical protein
YP_001309855.1	PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: lic:LIC12902 hypothetical protein
YP_001309856.1	KEGG: bce:BC3270 hypothetical membrane spanning protein
YP_001309857.1	KEGG: bce:BC3255 molybdate metabolism regulator
YP_001309859.1	KEGG: bce:BC3255 molybdate metabolism regulator
YP_001309860.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_001309861.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: bsu:BG11384 acetyl-CoA carboxylase (biotin carboxylase subunit)
YP_001309862.1	PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: lmo:lmo1356 acetyl-CoA carboxylase biotin carboxyl carrier protein
YP_001309863.1	TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: bld:BLi00502 KipA
YP_001309864.1	PFAM: Allophanate hydrolase subunit 1; KEGG: bld:BLi00501 KipI
YP_001309865.1	TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; KEGG: cth:Cthe_2697 alanine racemase
YP_001309866.1	PFAM: LamB/YcsF family protein; KEGG: cjj:CJJ81176_1526 LamB/YcsF family protein
YP_001309867.1	PFAM: protein of unknown function DUF1445; KEGG: par:Psyc_1103 hypothetical protein
YP_001309868.1	KEGG: dsy:DSY4353 hypothetical protein
YP_001309869.1	PFAM: aminotransferase, class IV; KEGG: cac:CAC0792 D-amino acid aminotransferase
YP_001309870.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: plt:Plut_1414  transcriptional regulator, AsnC family
YP_001309871.1	KEGG: bth:BT_2093 hypothetical protein
YP_001309872.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: swo:Swol_2552 branched-chain amino acid ABC transporter (ATP-binding protein)
YP_001309873.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: spd:SPD_0655 branched-chain amino acid ABC transporter ATP-binding protein
YP_001309874.1	PFAM: inner-membrane translocator; KEGG: chy:CHY_2230 high affinity branched-chain amino acid ABC transporter permease
YP_001309875.1	PFAM: inner-membrane translocator; KEGG: chy:CHY_2231 high affinity branched-chain amino acid ABC transporter permease
YP_001309876.1	PFAM: Extracellular ligand-binding receptor; KEGG: gka:GK2980 branched chain amino acid ABC transporter (substrate-binding protein)
YP_001309877.1	PFAM: domain of unknown function DUF1745; KEGG: ppd:Ppro_3141 domain of unknown function DUF1745
YP_001309878.1	PFAM: chemotaxis sensory transducer; KEGG: cac:CAC2483 methyl-accepting chemotaxis protein
YP_001309879.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ctc:CTC02429 ABC transporter ATP-binding protein
YP_001309880.1	KEGG: ctc:CTC01798 hypothetical protein
YP_001309881.1	PFAM:  cell wall binding repeat-containing protein; KEGG: mac:MA4292 cell surface protein
YP_001309882.1	PFAM: NUDIX hydrolase; KEGG: cno:NT01CX_2016 MutT/NUDIX family protein
YP_001309883.1	PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: mbu:Mbur_1482 nitrite and sulphite reductase, 4Fe-4S subunit
YP_001309884.1	PFAM: beta-lactamase domain protein; KEGG: eba:ebA6101 hypothetical protein
YP_001309885.1	PFAM: nitroreductase; KEGG: cac:CAC0718 ortholog YcnD B.subtilis, nitroreductase
YP_001309886.1	PFAM: helicase domain protein; DbpA, RNA-binding domain protein; type III restriction protein, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bce:BC5451 ATP-dependent RNA helicase
YP_001309887.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: lwe:lwe0631 hydrolase, Cof family
YP_001309888.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: spd:SPD_1738 MATE efflux family protein DinF
YP_001309889.1	KEGG: dsy:DSY3615 hypothetical protein
YP_001309890.1	PFAM: response regulator receiver; KEGG: dsy:DSY3627 hypothetical protein
YP_001309892.1	KEGG: cno:NT01CX_0224 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_001309893.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01881 methyl-accepting chemotaxis protein
YP_001309894.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: cpf:CPF_1452 cold shock protein
YP_001309895.1	TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: fnu:FN1169 L-lactate dehydrogenase
YP_001309896.1	PFAM: protein of unknown function DUF534; KEGG: swo:Swol_0325 hypothetical protein
YP_001309898.1	PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: bat:BAS3518 hypothetical protein
YP_001309899.1	PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: ATPase AAA; KEGG: cpf:CPF_1777 ABC transporter permease/ATP-binding protein
YP_001309900.1	PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: ATPase AAA; KEGG: cpf:CPF_1776 ABC transporter permease/ATP-binding protein
YP_001309901.1	KEGG: ctc:CTC01462 hypothetical protein
YP_001309902.1	KEGG: cff:CFF8240_1263 Mug G:T/U mismatch-specific DNA glycosylase
YP_001309903.1	PFAM:  cell wall binding repeat-containing protein; KEGG: mac:MA4292 cell surface protein
YP_001309904.1	PFAM: Phosphoglycerate mutase; KEGG: cno:NT01CX_2076 phosphoglycerate mutase family protein
YP_001309905.1	KEGG: chy:CHY_1717 hypothetical protein
YP_001309906.1	KEGG: chy:CHY_1718 MukB N-terminal domain/M protein repeat protein
YP_001309907.1	KEGG: chy:CHY_1719 hypothetical protein
YP_001309908.1	KEGG: chy:CHY_1720 hypothetical protein
YP_001309909.1	KEGG: bce:BC4454 hypothetical protein
YP_001309910.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: dsy:DSY3551 hypothetical protein
YP_001309911.1	KEGG: sdn:Sden_3579 hypothetical protein
YP_001309912.1	KEGG: sdn:Sden_3581 hypothetical protein
YP_001309913.1	PFAM: Domain of unknown function DUF1863; KEGG: bce:BC4454 hypothetical protein
YP_001309914.1	KEGG: tcx:Tcr_0373 hypothetical protein
YP_001309915.1	PFAM: Domain of unknown function DUF1863; KEGG: ajs:Ajs_2632 hypothetical protein
YP_001309916.1	PFAM: helicase domain protein; type III restriction protein, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cno:NT01CX_0321 helicase
YP_001309917.1	KEGG: ctc:CTC00658 hypothetical protein
YP_001309918.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cvi:CV1741 hypothetical protein
YP_001309920.1	TIGRFAM: phage replisome organizer, KEGG: sac:SACOL0341 hypothetical protein
YP_001309921.1	PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; KEGG: dsy:DSY2799 hypothetical protein
YP_001309922.1	KEGG: bat:BAS1975 hypothetical protein
YP_001309923.1	KEGG: rno:683977 hypothetical protein LOC683977
YP_001309924.1	KEGG: lsl:LSL_0951 hypothetical protein
YP_001309925.1	PFAM: elongation factor G, domain IV; KEGG: cth:Cthe_2729 translation elongation factor G
YP_001309928.1	TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; KEGG: vfi:VFA0815 DNA-3-methyladenine glycosylase
YP_001309929.1	PFAM: NERD domain protein; KEGG: ssa:SSA_0274 hypothetical protein
YP_001309930.1	SMART: beta and gamma crystallin; KEGG: mva:Mvan_4739 hypothetical protein
YP_001309931.1	PFAM: Carbohydrate-binding family V/XII; KEGG: sco:SCO5673 secreted chitinase
YP_001309932.1	PFAM: glycoside hydrolase, family 16; Carbohydrate-binding family V/XII; Fibronectin, type III domain protein; KEGG: sus:Acid_2816 glycoside hydrolase, family 16
YP_001309933.1	Heat shock-induced
YP_001309934.1	PFAM: glycoside hydrolase, family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; KEGG: cth:Cthe_0270 glycoside hydrolase, family 18
YP_001309935.1	PFAM: Carbohydrate-binding family V/XII; Lytic transglycosylase, catalytic; KEGG: ftl:FTL_1635 chitinase, fragment
YP_001309936.1	PFAM: glycoside hydrolase, family 1; KEGG: cac:CAC0743 6-phospho-beta-glucosidase
YP_001309937.1	TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, beta-glucoside-specific IIABC subunit; PFAM: sugar-specific permease, EIIA 1 domain; phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: spd:SPD_0502 PTS system, beta-glucosides-specific IIABC components
YP_001309938.1	PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: bld:BLi04201 transcriptional antiterminator required for substrate-dependent induction and catabolite repression of bglPH; RBL02059
YP_001309939.1	PFAM: regulatory protein, TetR; KEGG: bca:BCE_1210 transcriptional regulator, TetR family
YP_001309940.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mla:Mlab_0618 hypothetical protein
YP_001309941.1	PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: mgm:Mmc1_2928 plasmid pRiA4b ORF-3 family protein
YP_001309942.1	PFAM: regulatory protein, MarR; ArsR family transcriptional regulator; KEGG: bcz:BCZK3880 transcriptional regulator, MarR family
YP_001309943.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC00924 methyl-accepting chemotaxis protein
YP_001309944.1	PFAM: Extradiol ring-cleavage dioxygenase, class III protein, subunit B; KEGG: bce:BC1787 hypothetical protein
YP_001309945.1	PFAM: SCP-like extracellular; KEGG: bld:BLi01607 YkwD
YP_001309946.1	KEGG: dsy:DSY2713 hypothetical protein
YP_001309947.1	KEGG: dsy:DSY2712 hypothetical protein
YP_001309948.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY2711 hypothetical protein
YP_001309949.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY2710 hypothetical protein
YP_001309950.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dsy:DSY2709 hypothetical protein
YP_001309952.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01881 methyl-accepting chemotaxis protein
YP_001309953.1	KEGG: cff:CFF8240_0065 methyl-accepting chemotaxis protein
YP_001309954.1	PFAM: SCP-like extracellular; KEGG: bld:BLi01607 YkwD
YP_001309955.1	PFAM: isochorismatase hydrolase; KEGG: cac:CA_P0030 isochorismatase
YP_001309956.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cac:CA_P0029 permease MDR-related
YP_001309957.1	PFAM: regulatory protein, TetR; KEGG: cac:CA_P0028 HTH transcriptional regulator TetR family
YP_001309958.1	KEGG: cac:CAC2823 hypothetical protein
YP_001309959.1	KEGG: bcz:BCZK2509 conserved hypothetical protein; possible phosphoribulokinase/uridine kinase family
YP_001309960.1	PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: hma:rrnAC3101 methyltransferase
YP_001309962.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: cno:NT01CX_2348 sensory box/GGDEF family protein
YP_001309963.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: cac:CAC0720 hypothetical protein
YP_001309964.1	KEGG: tte:TTE2242 transposase
YP_001309965.1	PFAM: alpha/beta hydrolase fold; Epoxide hydrolase domain protein; KEGG: bcl:ABC1387 epoxide hydrolase 1
YP_001309966.1	PFAM: acriflavin resistance protein; KEGG: dsy:DSY2068 hypothetical protein
YP_001309967.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cno:NT01CX_1548 HlyD family secretion protein
YP_001309968.1	KEGG: mcp:MCAP_0860 hypothetical protein
YP_001309969.1	PFAM: regulatory protein, TetR; KEGG: sha:SH0304 hypothetical protein
YP_001309970.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: cac:CAC3361 transcriptional regulator, LysR family
YP_001309971.1	catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis
YP_001309972.1	PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cac:CAC2849 proline/glycine betaine ABC-type transport system, permease component fused to periplasmic component
YP_001309973.1	TIGRFAM: glycine betaine/L-proline ABC transporter ATPase subunit; PFAM: CBS domain containing protein; ABC transporter; SMART: ATPase AAA; KEGG: cno:NT01CX_0629 glycine betaine/carnitine/choline transport ATP-binding protein
YP_001309974.1	PFAM: GntR family transcriptional regulator; TrkA-C domain protein; KEGG: efa:EF2640 transcriptional regulator, GntR family
YP_001309975.1	PFAM: polysaccharide deacetylase; KEGG: cpr:CPR_0810 polysaccharide deacetylase family protein
YP_001309976.1	KEGG: ayw:AYWB_353 hypothetical protein
YP_001309977.1	PFAM: acriflavin resistance protein; KEGG: cvi:CV3924 probable transmembrane drug efflux protein
YP_001309978.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_3760 secretion protein HlyD
YP_001309979.1	PFAM: regulatory protein, TetR; KEGG: blo:BL0061 possible TetR-type transcriptional regulator
YP_001309980.1	KEGG: cac:CAC0757 predicted membrane protein
YP_001309981.1	KEGG: tte:TTE2242 transposase
YP_001309982.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: bxe:Bxe_B0546  epimerase/dehydratase
YP_001309983.1	PFAM: aldo/keto reductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cac:CAC0767 Fe-S oxidoreductase
YP_001309984.1	PFAM: protein of unknown function DUF1121; KEGG: cth:Cthe_0762 protein of unknown function DUF1121
YP_001309985.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: cpr:CPR_2286 butyryl-CoA dehydrogenase
YP_001309986.1	PFAM: FAD linked oxidase domain protein; KEGG: fnu:FN1536 (S)-2-hydroxy-acid oxidase chain D
YP_001309987.1	TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: cno:NT01CX_1609 L-lactate permease
YP_001309988.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: fnu:FN1533 electron transfer flavoprotein alpha-subunit
YP_001309989.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; KEGG: fnu:FN1534 electron transfer flavoprotein beta-subunit
YP_001309990.1	PFAM: nitroreductase; KEGG: cac:CAC3483 nitroreductase fused to ferredoxin domain
YP_001309991.1	PFAM: amino acid permease-associated region; KEGG: cac:CAC1472 amino acid permease
YP_001309992.1	PFAM: extracellular solute-binding protein, family 3; KEGG: vei:Veis_0187 extracellular solute-binding protein, family 3
YP_001309993.1	PFAM: glycoside hydrolase, family 31; KEGG: bha:BH2055  glycosyl hydrolase
YP_001309994.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi03542 similar to sugar permease; RBL01127
YP_001309995.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi03541  transporter; RBL01129
YP_001309996.1	PFAM: extracellular solute-binding protein, family 1; KEGG: bld:BLi03540  ABC transporter sugar binding protein; RBL01130
YP_001309997.1	KEGG: tte:TTE2242 transposase
YP_001309998.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: cpr:CPR_2056 DNA-binding response regulator, AraC family
YP_001309999.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase internal region; KEGG: tte:TTE2344 predicted ATPase
YP_001310000.1	PFAM: thioesterase superfamily protein; KEGG: tte:TTE1843 uncharacterized protein, possibly involved in aromatic compounds catabolism
YP_001310001.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: tte:TTE1081 diguanylate cyclase/phosphodiesterase domain 2 (EAL)
YP_001310002.1	PFAM: phosphotransferase system PTS, sorbose-specific IIC subunit; PTS system mannose/fructose/sorbose family IID component; KEGG: eca:ECA2387 PTS system, mannose-specific iid component
YP_001310003.1	PFAM: PTS system sorbose subfamily IIB component; KEGG: bpn:BPEN_459 PTS family enzyme IIA/enzyme IIB, mannose-specific
YP_001310004.1	PFAM: PTS system fructose subfamily IIA component; KEGG: lpl:lp_0586 mannose PTS, EIIA
YP_001310005.1	KEGG: cno:NT01CX_0292 predicted phosphosugar isomerase
YP_001310006.1	PFAM: PTS system fructose subfamily IIA component; KEGG: ppe:PEPE_0174 phosphotransferase system, mannose/fructose-specific component IIA
YP_001310007.1	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N-acetylgalactosamine transport
YP_001310008.1	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane;protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport
YP_001310009.1	catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport
YP_001310010.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY1415 hypothetical protein
YP_001310011.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: cac:CAC2547 possible membrane-associated methyl-accepting chemotaxis protein fused to HAMP domain
YP_001310012.1	TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: lin:lin0795 similar to  Na+/H+ antiporter
YP_001310013.1	KEGG: cpr:CPR_1341 D-galactose-binding periplasmic protein precursor
YP_001310014.1	PFAM: MORN repeat-containing protein; KEGG: bfs:BF2279 hypothetical protein
YP_001310015.1	PFAM: NHL repeat containing protein; KEGG: mba:Mbar_A3620  surface layer protein
YP_001310016.1	PFAM: acriflavin resistance protein; KEGG: gme:Gmet_2518 acriflavin resistance protein
YP_001310017.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aba:Acid345_0308 secretion protein HlyD
YP_001310018.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: chy:CHY_0092 DNA-binding response regulator
YP_001310019.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cac:CAC0317 sensory transduction histidine kinase
YP_001310020.1	TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: chy:CHY_1864 drug resistance transporter EmrB/QacA family
YP_001310021.1	KEGG: mta:Moth_2323 secretion protein HlyD
YP_001310022.1	PFAM: secretion protein HlyD family protein; KEGG: mta:Moth_2322 secretion protein HlyD
YP_001310023.1	KEGG: cac:CAC3518 transcriptional regulators, AcrR family
YP_001310024.1	PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cac:CAC3010 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis ortholog
YP_001310025.1	PFAM: Cold-shock protein, DNA-binding; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein; KEGG: cno:NT01CX_0617 cold shock protein CspB
YP_001310026.1	PFAM: GntR family transcriptional regulator; GntR domain protein; KEGG: cpe:CPE0309 probable transcriptional regulator
YP_001310027.1	PFAM: acriflavin resistance protein; KEGG: dsy:DSY2068 hypothetical protein
YP_001310028.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cno:NT01CX_1548 HlyD family secretion protein
YP_001310029.1	KEGG: ayw:AYWB_353 hypothetical protein
YP_001310030.1	PFAM: regulatory protein, TetR; KEGG: sha:SH0304 hypothetical protein
YP_001310031.1	exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH
YP_001310032.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dra:DR0605 GGDEF family protein
YP_001310033.1	PFAM: dihydrodipicolinate reductase; KEGG: cth:Cthe_1170 dihydrodipicolinate reductase
YP_001310034.1	PFAM: GCN5-related N-acetyltransferase; KEGG: mba:Mbar_A0671 acetyltransferase (GNAT) family protein
YP_001310035.1	PFAM: TrkA-C domain protein; Chloride channel, core; KEGG: cno:NT01CX_0195 voltage gated chloride channel family protein
YP_001310038.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bte:BTH_I2387 oxidoreductase, short-chain dehydrogenase/reductase family
YP_001310039.1	PFAM: protein of unknown function DUF421; KEGG: cac:CAC1521 uncharacterized membrane protein, YetF/YdfS/YkjA/YrbG/YdfR B.subtilis ortholog
YP_001310040.1	KEGG: dsy:DSY1539 hypothetical protein
YP_001310041.1	PFAM: Domain of unknown function DUF1791; KEGG: chy:CHY_1266 hypothetical protein
YP_001310042.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: bth:BT_2434 pyridine nucleotide-disulphide oxidoreductase
YP_001310043.1	KEGG: cpr:CPR_0627 hypothetical protein
YP_001310044.1	PFAM: UvrD/REP helicase; KEGG: cpr:CPR_1591 ATP-dependent DNA helicase, UvrD/REP family
YP_001310045.1	PFAM: membrane-bound metal-dependent hydrolase; KEGG: cac:CAC0114 predicted membrane protein
YP_001310046.1	KEGG: cac:CAC2615 uncharacterized conserved protein, CotF B.subtilis family
YP_001310047.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cth:Cthe_1846 periplasmic sensor signal transduction histidine kinase
YP_001310048.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE2474 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
YP_001310050.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY4989 hypothetical protein
YP_001310051.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: cno:NT01CX_2395 hypothetical protein
YP_001310052.1	KEGG: ddi:DDBDRAFT_0190180 hypothetical protein
YP_001310053.1	KEGG: cac:CAC2416 uncharacterized protein, ErfK family; contains peptidoglycan-binding domain
YP_001310054.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: aha:AHA_3960 cation efflux family protein
YP_001310055.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cno:NT01CX_1158 thioredoxin
YP_001310056.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: dsy:DSY1195 hypothetical protein
YP_001310057.1	PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: dsy:DSY1196 probable cytochrome c biogenesis protein CcdA
YP_001310058.1	PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsy:DSY0274 hypothetical protein
YP_001310059.1	PFAM: protein of unknown function DUF134; KEGG: ctc:CTC01373 DNA-binding protein
YP_001310060.1	TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mta:Moth_1280 ubiquinone/menaquinone biosynthesis methyltransferases
YP_001310061.1	PFAM: Abortive infection protein; KEGG: lip:LI0758 hypothetical protein
YP_001310062.1	TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: tma:TM1528 1,4-dihydroxy-2-naphthoate octaprenyltransferase
YP_001310063.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dsy:DSY1372 hypothetical protein
YP_001310065.1	PFAM: DoxX family protein; KEGG: rxy:Rxyl_3069 DoxX
YP_001310066.1	PFAM: Polyprenyl synthetase; KEGG: swo:Swol_0680 trans-hexaprenyltranstransferase
YP_001310067.1	PFAM: prolipoprotein diacylglyceryl transferase; KEGG: mta:Moth_1993 prolipoprotein diacylglyceryl transferase
YP_001310068.1	PFAM: NLP/P60 protein; KEGG: ctc:CTC00227  cell wall-associated hydrolase
YP_001310069.1	TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ctc:CTC02510 cell division ATP-binding protein ftsE
YP_001310070.1	PFAM: protein of unknown function DUF214; KEGG: ctc:CTC02509 cell division protein ftsX
YP_001310071.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01211 methyl-accepting chemotaxis protein TlpA
YP_001310072.1	PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: ctc:CTC00145 cytochrome c-type biogenesis protein ccdA
YP_001310073.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: tte:TTE1026 thiol-disulfide isomerase and thioredoxins
YP_001310074.1	PFAM: SNARE associated Golgi protein; KEGG: cpe:CPE1564 hypothetical protein
YP_001310076.1	PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: mxa:MXAN_3425 multicopper oxidase domain protein
YP_001310079.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cac:CAC1553 membrane associated sensory transduction histidine kinase (with HAMP domain)
YP_001310080.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC1552 response regulator (CheY-like receiver domain and HTH DNA-binding domain)
YP_001310081.1	TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mta:Moth_0987 proton-translocating NADH-quinone oxidoreductase, chain N
YP_001310082.1	TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mta:Moth_0986 proton-translocating NADH-quinone oxidoreductase, chain M
YP_001310083.1	TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); KEGG: mta:Moth_0985 proton-translocating NADH-quinone oxidoreductase, chain L
YP_001310084.1	PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: mta:Moth_0984 NADH-ubiquinone oxidoreductase, chain 4L
YP_001310085.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: mta:Moth_0983 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
YP_001310086.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_1420 proton-translocating NADH-quinone oxidoreductase, I subunit
YP_001310087.1	PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: mta:Moth_0981 respiratory-chain NADH dehydrogenase, subunit 1
YP_001310088.1	catalyzes the transfer of electrons from NADH to ubiquinone
YP_001310089.1	PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: mta:Moth_0979 NADH (or F420H2) dehydrogenase, subunit C
YP_001310090.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_001310091.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: mta:Moth_0977 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YP_001310094.1	PFAM: UbiA prenyltransferase; KEGG: ssp:SSP1750 14-dihydroxy-2-naphthodate octaprenyltransferase
YP_001310095.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cno:NT01CX_0308 pyridine nucleotide-disulphide oxidoreductase family protein
YP_001310096.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: mst:Msp_0703  dissimilatory sulfite reductase
YP_001310097.1	PFAM: protein of unknown function DUF81; KEGG: chy:CHY_2470 hypothetical protein
YP_001310098.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cno:NT01CX_0639 conserved protein, ferredoxin-related
YP_001310099.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_001310100.1	PFAM: ROK family protein; KEGG: dsy:DSY2954 hypothetical protein
YP_001310101.1	TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cac:CAC0809 hydrogenase formation factor (hypE)
YP_001310102.1	PFAM: hydrogenase formation HypD protein; KEGG: tte:TTE0133 Hydrogenase maturation factor
YP_001310103.1	TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dsy:DSY2476 hydrogenase expression/formation protein HypC
YP_001310104.1	TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: cac:CAC0810 hydrogenase maturation factor (hypF)
YP_001310105.1	KEGG: cac:CA_P0145 hypothetical protein, CF-29 family
YP_001310106.1	TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: cac:CA_P0143 hydrogenase maturation protease delta subunit, HyaD-like
YP_001310107.1	PFAM: nickel-dependent hydrogenase, large subunit; KEGG: cac:CA_P0142 hydrogenase large chain
YP_001310108.1	TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; KEGG: cac:CA_P0141 hydrogenase small chain
YP_001310109.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_001310110.1	TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: cac:CAC0587 flavodoxin
YP_001310111.1	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: ctc:CTC01876 transcriptional regulatory protein
YP_001310112.1	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: ctc:CTC01875 flavodoxin
YP_001310113.1	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: ppd:Ppro_3699 beta-lactamase domain protein
YP_001310114.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: chy:CHY_2596  nitrate reductase
YP_001310115.1	TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; KEGG: cac:CAC2498 carbon monoxide dehydrogenase, catalytic subunit (cooS)
YP_001310117.1	PFAM: chemotaxis sensory transducer; KEGG: btl:BALH_0624 methyl-accepting chemotaxis protein
YP_001310118.1	KEGG: ssa:SSA_0505 conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
YP_001310119.1	PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bca:BCE_1547 nitrite reductase
YP_001310120.1	KEGG: cph:Cpha266_1424 nitroreductase
YP_001310121.1	PFAM: Heavy metal transport/detoxification protein; KEGG: mpt:Mpe_A1640 P1 ATPase/HMA domain
YP_001310122.1	PFAM: transcriptional regulator PadR family protein; KEGG: lbr:LVIS_1807 predicted transcriptional regulator
YP_001310123.1	PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mll1728 probable transporter
YP_001310125.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY0083 hypothetical protein
YP_001310126.1	SMART: helix-turn-helix domain protein; KEGG: bld:BLi01580 YozG
YP_001310127.1	KEGG: cac:CAC2553 uncharacterized mebrane protein, YOAS B.subtilis ortholog
YP_001310128.1	KEGG: lbr:LVIS_0656 hypothetical protein
YP_001310129.1	PFAM: LytTr DNA-binding region; KEGG: ssa:SSA_1982 transcriptional regulator, LytR/AlgR family
YP_001310130.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mac:MA0616 2-cys peroxiredoxin, subunit A
YP_001310131.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpf:CPF_0550 cell wall binding repeat domain protein
YP_001310132.1	KEGG: ctc:CTC02461 cell division protein ftsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA, central domain protein; peptidase M41, FtsH extracellular; SMART: ATPase AAA
YP_001310133.1	PFAM: peptidase, membrane zinc metallopeptidase, KEGG: cth:Cthe_0570 peptidase, membrane zinc metallopeptidase
YP_001310134.1	catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis
YP_001310135.1	PFAM: protein of unknown function DUF323; KEGG: bha:BH0900 transcriptional regulator (enhancement of xylanase A production)
YP_001310136.1	PFAM: glycoside hydrolase, family 11; KEGG: bsu:BG10808 endo-1,4-beta-xylanase
YP_001310138.1	KEGG: cac:CAC0208 predicted membrane protein; CF-20 family
YP_001310140.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3990 hypothetical protein
YP_001310141.1	PFAM: NADPH-dependent FMN reductase; KEGG: cac:CAC2528 multimeric flavodoxin WrbA fused to cytochrome c-like domain
YP_001310142.1	PFAM: helix-turn-helix- domain containing protein, AraC type; glycoside hydrolase, family 39; KEGG: bha:BH1068 beta-xylosidase
YP_001310143.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpe:CPE0137 probable ABC transporter
YP_001310144.1	KEGG: cac:CA_P0061 hypothetical protein
YP_001310145.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: cac:CAC2534 HD_GYP hydrolase domain fused to HD hydrolase domain
YP_001310146.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cth:Cthe_1846 periplasmic sensor signal transduction histidine kinase
YP_001310147.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1847 two component transcriptional regulator, winged helix family
YP_001310148.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FMN-binding domain protein; KEGG: cac:CAC2762 polyferredoxin
YP_001310149.1	PFAM: ApbE family lipoprotein; KEGG: cac:CAC2761 thiamine biosynthesis lipoprotein ApbE
YP_001310150.1	PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: aci:ACIAD3328  regulatory or redox component complexing with Bfr, in iron storage and mobility (Bfd)
YP_001310151.1	PFAM: nitroreductase; KEGG: cac:CAC0850 nitroreductase
YP_001310152.1	PFAM: Pirin domain protein; KEGG: bcz:BCZK4772 pirin
YP_001310153.1	PFAM: regulatory protein, MarR; KEGG: cpe:CPE0789 probable transcriptional regulator
YP_001310154.1	PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cac:CAC2596 Rieske FeS-domain containing oxidoreductase
YP_001310155.1	KEGG: ctc:CTC02189 hypothetical protein
YP_001310156.1	PFAM: protein of unknown function UPF0016; KEGG: sat:SYN_01349 hypothetical membrane protein
YP_001310157.1	PFAM: protein of unknown function DUF156; KEGG: dsy:DSY0162 hypothetical protein
YP_001310158.1	TIGRFAM: ATPase P; copper-translocating P-type ATPase; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY0154 hypothetical protein
YP_001310159.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC2751 predicted acetyltransferase
YP_001310160.1	KEGG: cpf:CPF_0639 hypothetical protein
YP_001310162.1	PFAM: Rubrerythrin; KEGG: mja:MJ0746 hypothetical protein
YP_001310163.1	KEGG: cpe:CPE1341 probable galactoside ABC transporter
YP_001310164.1	PFAM: GCN5-related N-acetyltransferase; KEGG: mac:MA4512 acetyltransferase (GNAT) family protein
YP_001310165.1	KEGG: lmo:lmo0439 hypothetical protein
YP_001310166.1	KEGG: cpr:CPR_1341 D-galactose-binding periplasmic protein precursor
YP_001310167.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: cth:Cthe_0806 PAS/PAC sensor hybrid histidine kinase
YP_001310168.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: cno:NT01CX_2347 diguanylate cyclase/phosphodiesterase domain 2
YP_001310169.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cpe:CPE1788 hypothetical protein
YP_001310170.1	PFAM: regulatory protein, TetR; KEGG: oih:OB3169 hypothetical protein
YP_001310171.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: cth:Cthe_0806 PAS/PAC sensor hybrid histidine kinase
YP_001310172.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; KEGG: cth:Cthe_0806 PAS/PAC sensor hybrid histidine kinase
YP_001310173.1	PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: cac:CAC2365 small acid-soluble spore protein
YP_001310174.1	TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX hydrolase; KEGG: plu:plu3987 unnamed protein product; some similarities with isopentenyl-diphosphate delta-isomerase (IPP isomerase) (isopentenyl pyrophosphate isomerase)
YP_001310175.1	PFAM: helix-turn-helix, HxlR type; KEGG: bsu:BG11184 positive regulator of HxlAB
YP_001310176.1	PFAM: nitroreductase; KEGG: mmp:MMP0426 nitroreductase family
YP_001310177.1	PFAM: protein of unknown function DUF1234; KEGG: mfa:Mfla_1025 protein of unknown function DUF1234
YP_001310178.1	PFAM: isochorismatase hydrolase; KEGG: lin:lin0638 hypothetical protein
YP_001310179.1	PFAM: TfoX, C-terminal domain protein; KEGG: swo:Swol_2034 hypothetical protein
YP_001310180.1	KEGG: dsy:DSY4814 hypothetical protein
YP_001310181.1	PFAM: iron dependent repressor; KEGG: cth:Cthe_0620 iron (metal) dependent repressor, DtxR family
YP_001310182.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC0528 ABC transporter ATPase component (two ATPase domains)
YP_001310183.1	KEGG: cno:NT01CX_0353 hypothetical protein
YP_001310184.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_001310185.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: tde:TDE0333 MATE efflux family protein
YP_001310186.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY4891 hypothetical protein
YP_001310187.1	PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY4892 hypothetical protein
YP_001310188.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: dsy:DSY3610 hypothetical protein
YP_001310189.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY3613 hypothetical protein
YP_001310190.1	PFAM: cobalt transport protein; KEGG: tde:TDE0283 transporter
YP_001310191.1	TIGRFAM: conserved hypothetical integral membrane protein; KEGG: bad:BAD_0736 hypothetical protein
YP_001310192.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: dsy:DSY3610 hypothetical protein
YP_001310193.1	one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity
YP_001310194.1	KEGG: cpf:CPF_0713 hypothetical protein
YP_001310195.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: cpe:CPE0716 RNA polymerase ECF-type sigma factor
YP_001310196.1	PFAM: peptidase M56, BlaR1; KEGG: cac:CAC3437 predicted membrane-associated Zn-dependent protease, HtpX family (BlaR subfamily)
YP_001310197.1	PFAM: Penicillinase repressor; KEGG: bcz:BCZK2407 penicillinase repressor
YP_001310198.1	PFAM: dihydrouridine synthase, DuS; KEGG: cpf:CPF_1482 dihydrouridine synthase family protein
YP_001310199.1	PFAM: heat shock protein DnaJ domain protein; KEGG: mmu:639469 hypothetical protein LOC639469
YP_001310200.1	PFAM: regulatory protein, TetR; KEGG: bld:BLi00563 TetR
YP_001310201.1	PFAM: MMPL domain protein; KEGG: cac:CA_P0102 membrane protein
YP_001310202.1	KEGG: cac:CAC2528 multimeric flavodoxin WrbA fused to cytochrome c-like domain
YP_001310203.1	KEGG: dsy:DSY0774 hypothetical protein
YP_001310204.1	PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: sth:STH1431 small acid-soluble spore protein
YP_001310205.1	KEGG: bha:BH1976 hypothetical protein
YP_001310208.1	KEGG: mmp:MMP0794 hypothetical protein
YP_001310209.1	KEGG: tpa:TP0072 hypothetical protein
YP_001310210.1	PFAM: amino acid permease-associated region; KEGG: mmp:MMP0850 amino acid/polyamine transporter; family I
YP_001310211.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cno:NT01CX_1196 membrane associated methyl-accepting chemotaxis protein with HAMP domain
YP_001310212.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_001310213.1	PFAM: inner-membrane translocator; KEGG: cth:Cthe_1581 inner-membrane translocator
YP_001310214.1	PFAM: inner-membrane translocator; KEGG: cth:Cthe_1580 inner-membrane translocator
YP_001310215.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cth:Cthe_1579 ABC transporter protein
YP_001310216.1	PFAM: basic membrane lipoprotein; KEGG: sth:STH1236 sugar ABC transporter substrate-binding protein
YP_001310217.1	catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate
YP_001310218.1	KEGG: lac:LBA1353 hypothetical protein
YP_001310219.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_001310220.1	TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: tte:TTE0462 Cytidine deaminase
YP_001310221.1	TIGRFAM: uridine phosphorylase; PFAM: purine or other phosphorylase, family 1; KEGG: cpf:CPF_0375 uridine phosphorylase
YP_001310222.1	PFAM: GntR family transcriptional regulator; KEGG: ctc:CTC01391 transcriptional regulatory protein
YP_001310224.1	PFAM: conserved hypothetical protein 698; KEGG: cno:NT01CX_2345 hypothetical protein
YP_001310225.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: cno:NT01CX_2344 transcription regulators, LysR family
YP_001310226.1	PFAM: aldo/keto reductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gsu:GSU1370 oxidoreductase, aldo/keto reductase family
YP_001310227.1	KEGG: ctc:CTC00860 D-galactose-binding periplasmic protein precursor
YP_001310228.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bat:BAS2637 acetyltransferase, GNAT family
YP_001310229.1	PFAM: helix-turn-helix, HxlR type; KEGG: spm:spyM18_2160 hypothetical protein
YP_001310230.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: dsy:DSY3711 hypothetical protein
YP_001310231.1	KEGG: mmp:MMP0730 hypothetical protein
YP_001310232.1	PFAM: ThiJ/PfpI domain protein; KEGG: mba:Mbar_A0353 intracellular protease, ThiJ/PfpI family
YP_001310234.1	KEGG: cpr:CPR_1341 D-galactose-binding periplasmic protein precursor
YP_001310235.1	PFAM: regulatory protein, TetR; KEGG: dsy:DSY2841 hypothetical protein
YP_001310236.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: tde:TDE0931 MATE efflux family protein
YP_001310237.1	PFAM: type IV pilus assembly PilZ; KEGG: ctc:CTC01654 flagellar protein
YP_001310239.1	KEGG: mba:Mbar_A0773 outer membrane protein expression inhibitor
YP_001310240.1	PFAM: UvrD/REP helicase; KEGG: cth:Cthe_2876 ATP-dependent DNA helicase PcrA
YP_001310241.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bld:BLi02358 YprA
YP_001310243.1	KEGG: syf:Synpcc7942_1164 hypothetical protein
YP_001310244.1	KEGG: cac:CAC0545 uncharacterized small protein, homolog of Treponema (6136517)
YP_001310245.1	PFAM: type III restriction protein, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: aav:Aave_3355 protein of unknown function DUF450
YP_001310246.1	PFAM: HNH endonuclease
YP_001310247.1	SMART: ATPase AAA; KEGG: hso:HS_1791 hypothetical protein
YP_001310248.1	PFAM: protein of unknown function DUF262; KEGG: ava:Ava_3592 protein of unknown function DUF262
YP_001310249.1	PFAM: restriction modification system DNA specificity domain; KEGG: sfr:Sfri_2607 restriction modification system DNA specificity domain
YP_001310250.1	PFAM: N-6 DNA methylase; KEGG: mba:Mbar_A1016 type I restriction-modification system methyltransferase subunit
YP_001310251.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: cno:NT01CX_1545 sigma-70 region 2 domain protein
YP_001310252.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mbu:Mbur_1925 MATE efflux family protein
YP_001310253.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bce:BC1115 transcriptional regulator, AraC family
YP_001310256.1	PFAM: Phosphoglycerate mutase; KEGG: mac:MA3008 phosphoglycerate mutase family protein
YP_001310257.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cno:NT01CX_0224 sensory transduction histidine kinase
YP_001310258.1	KEGG: cpr:CPR_1533 hypothetical protein
YP_001310259.1	PFAM: Accessory gene regulator B; KEGG: cpr:CPR_1532 accessory gene regulator protein B
YP_001310260.1	PFAM: Resolvase helix-turn-helix domain protein
YP_001310261.1	PFAM: regulatory protein, TetR; KEGG: cpr:CPR_0727 hypothetical protein
YP_001310262.1	KEGG: mac:MA1837 hypothetical protein
YP_001310263.1	TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: ssa:SSA_0042 amino acid recemase
YP_001310264.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: cac:CAC0023 transcriptional regulator, LysR family
YP_001310265.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bat:BAS2278 transporter LysE family
YP_001310266.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ooe:OEOE_0396 carbonyl reductase
YP_001310267.1	PFAM: LysR family transcriptional regulator; KEGG: lpl:lp_3024 transcription regulator
YP_001310268.1	KEGG: bur:Bcep18194_C7591 alpha/beta superfamily-like hydrolase
YP_001310269.1	PFAM: regulatory protein, MerR; KEGG: oih:OB0785 transcriptional regulator
YP_001310270.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: swo:Swol_2463 RNA-directed DNA polymerase (reverse transcriptase)
YP_001310271.1	PFAM: tRNA synthetase class I (M); KEGG: tko:TK1049 methionyl-tRNA synthetase
YP_001310275.1	KEGG: chu:CHU_1296 hypothetical protein
YP_001310276.1	KEGG: bur:Bcep18194_C6624 hypothetical protein
YP_001310278.1	KEGG: bca:BCE_3512 hypothetical protein
YP_001310281.1	KEGG: chy:CHY_0145 hypothetical protein
YP_001310283.1	TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; Glycosyltransferase 28, C-terminal domain; KEGG: cac:CA_P0045 glycosyl transferase
YP_001310284.1	PFAM: BRO domain protein domain protein; KEGG: cth:Cthe_2462 BRO-like protein
YP_001310285.1	TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: chy:CHY_2622 transcriptional regulator, AbrB family
YP_001310286.1	KEGG: bha:BH3541 hypothetical protein
YP_001310287.1	TIGRFAM: primosome, DnaD subunit; phage replisome organizer, KEGG: lmo:lmo2317 similar to protein gp49
YP_001310288.1	KEGG: cpf:CPF_0989 hypothetical protein
YP_001310289.1	KEGG: cac:CAC3442 DNA polymerase III (alpha subunit); TIGRFAM: DNA polymerase III, epsilon subunit; DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; Exonuclease, RNase T and DNA polymerase III; SMART: phosphoesterase PHP domain protein; Exonuclease
YP_001310291.1	KEGG: btl:BALH_1929 hypothetical protein
YP_001310292.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_001310293.1	PFAM:  cell wall binding repeat-containing protein; KEGG: mac:MA4289 cell surface protein
YP_001310294.1	KEGG: cpf:CPF_0995 hypothetical protein
YP_001310296.1	PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; KEGG: bld:BLi00446 YbfA
YP_001310299.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: tko:TK0480 metal-dependent phosphohydrolase, HD superfamily
YP_001310300.1	KEGG: dsy:DSY3634 hypothetical protein
YP_001310301.1	PFAM: nitroreductase; KEGG: fnu:FN1223 oxygen-insensitive NAD(P)H nitroreductase / dihydropteridine reductase
YP_001310303.1	PFAM: chloramphenicol acetyltransferase; KEGG: btk:BT9727_2179 chloramphenicol O-acetyltransferase
YP_001310304.1	KEGG: ppr:PBPRB1295 hypothetical protein
YP_001310305.1	PFAM: sodium:dicarboxylate symporter; KEGG: cpf:CPF_0756 proton/sodium-glutamate symporter
YP_001310306.1	catalyzes the formation of fumarate from aspartate
YP_001310307.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: fnu:FN0603 transcriptional LysR family transcriptional regulator family
YP_001310308.1	KEGG: cac:CA_P0101 hypothetical protein
YP_001310310.1	KEGG: mac:MA3537 hypothetical protein
YP_001310313.1	PFAM: Endoribonuclease L-PSP; KEGG: cac:CAC1077  translation initiation inhibitor
YP_001310315.1	PFAM: ThiJ/PfpI domain protein; KEGG: cac:CAC2826 intracellular protease/amidase related enzyme (ThiJ family)
YP_001310317.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bcz:BCZK2333 methyltransferase
YP_001310318.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: efa:EF1902 glyoxylase family protein
YP_001310319.1	PFAM: protein of unknown function DUF214; KEGG: cno:NT01CX_1271 cell division protein FtsX
YP_001310320.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: cth:Cthe_1808 transposase IS116/IS110/IS902
YP_001310321.1	PFAM: transposase, IS111A/IS1328/IS1533; KEGG: lac:LBA1723 transposase
YP_001310322.1	PFAM:  cell wall binding repeat-containing protein; KEGG: mac:MA4292 cell surface protein
YP_001310323.1	PFAM: alpha/beta hydrolase fold; KEGG: cac:CA_P0097 carboxyl esterase, a/b hydrolase
YP_001310324.1	KEGG: cno:NT01CX_1623 hypothetical protein
YP_001310325.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: dsy:DSY3711 hypothetical protein
YP_001310326.1	KEGG: oih:OB0269 hypothetical protein
YP_001310327.1	KEGG: mac:MA0740 hypothetical protein
YP_001310328.1	TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Miro domain protein; KEGG: cac:CAC1651 predicted GTPase with uncharacterized domain, ortholog of T.maritima (4980952)
YP_001310329.1	catalyzes the formation of fumarate from aspartate
YP_001310330.1	PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cpe:CPE2560 spore cortex-lytic enzyme
YP_001310331.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: chy:CHY_0552 hypothetical protein
YP_001310333.1	KEGG: dsy:DSY4987 hypothetical protein
YP_001310334.1	PFAM: SNARE associated Golgi protein; KEGG: bha:BH2057 alkaline phosphatase
YP_001310335.1	PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: sth:STH1431 small acid-soluble spore protein
YP_001310337.1	PFAM: protein of unknown function DUF161; KEGG: lmf:LMOf2365_2481 YitT family protein
YP_001310338.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: cac:CA_P0082 CRP (cyclic AMP receptor protein) regulatory protein
YP_001310340.1	KEGG: cac:CAC1494 hypothetical protein, CF-32 family
YP_001310342.1	PFAM: Rubrerythrin; KEGG: cno:NT01CX_1830 hypothetical protein
YP_001310344.1	PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; KEGG: ppe:PEPE_0096 predicted dehydrogenase related protein
YP_001310345.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: btk:BT9727_5088 hydrolase, haloacid dehalogenase-like family; possible 2-haloacid dehalogenase
YP_001310346.1	PFAM: permease; KEGG: cno:NT01CX_2389 predicted permease superfamily
YP_001310347.1	PFAM: Protein of unknown function DUF1980; KEGG: ctc:CTC00938 membrane-spanning protein
YP_001310348.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpf:CPF_0550 cell wall binding repeat domain protein
YP_001310349.1	PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: cpr:CPR_1411 small, acid-soluble spore protein
YP_001310350.1	PFAM: amino acid-binding ACT domain protein; KEGG: dsy:DSY1559 hypothetical protein
YP_001310352.1	PFAM: glycoside hydrolase, family 25; cell wall binding repeat-containing protein; KEGG: cac:CAC0554 autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases ; peptodoglycan-binding domain
YP_001310353.1	PFAM: Holin, phage phi LC3; KEGG: sak:SAK_0652 prophage LambdaSa03, holin, phi LC3 family
YP_001310354.1	KEGG: eca:ECA1998 hypothetical protein
YP_001310356.1	PFAM: glycoside hydrolase, family 1; KEGG: cac:CAC1408 phospho-beta-glucosidase
YP_001310357.1	KEGG: smu:SMU.772  glucan-binding protein D; BglB-like protein
YP_001310358.1	TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, beta-glucoside-specific IIABC subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease, EIIA 1 domain; phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: cac:CAC1407 PTS system, beta-glucosides-specific IIABC component
YP_001310359.1	PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: cac:CAC1406 transcriptional antiterminator (BglG family)
YP_001310360.1	PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: sth:STH1431 small acid-soluble spore protein
YP_001310361.1	PFAM: amino acid permease-associated region; KEGG: cac:CAC3285 predicted amino acid transporter
YP_001310362.1	PFAM: class II aldolase/adducin family protein; KEGG: tte:TTE1592 ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
YP_001310363.1	PFAM: coenzyme A transferase; KEGG: ctc:CTC00478 acetyl-coA:acetoacetyl-coA transferase alpha subunit
YP_001310364.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mba:Mbar_A1437 cobalt-zinc-cadmium resistance protein
YP_001310365.1	KEGG: san:gbs1152 hypothetical protein
YP_001310366.1	PFAM: NUDIX hydrolase; NADH pyrophosphatase-like-like; Zinc ribbon, NADH pyrophosphatase; KEGG: cac:CAC3396 Nudix (MutT) family hydrolase, C4-type Zn-finger domain containing
YP_001310367.1	KEGG: pfa:MAL1P2.10 hypothetical protein
YP_001310368.1	KEGG: cpr:CPR_0992 hypothetical protein
YP_001310369.1	KEGG: cpf:CPF_0742 hypothetical protein
YP_001310371.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: cth:Cthe_1293 metal dependent phosphohydrolase
YP_001310373.1	PFAM: polysaccharide deacetylase; KEGG: cno:NT01CX_1505 predicted xylanase/chitin deacetylase
YP_001310374.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC2935 predicted acetyltransferase
YP_001310375.1	KEGG: dsy:DSY0685 hypothetical protein
YP_001310376.1	PFAM: Thioredoxin domain; KEGG: cpf:CPF_1847 thioredoxin family protein
YP_001310377.1	KEGG: cpf:CPF_1303 hypothetical protein
YP_001310378.1	KEGG: hch:HCH_01166 ABC-type sugar transport system, periplasmic component
YP_001310379.1	KEGG: dsy:DSY2272 hypothetical protein
YP_001310381.1	KEGG: cpe:CPE1341 probable galactoside ABC transporter
YP_001310382.1	PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC3415 ABC-type multidrug/protein/lipid transport system, ATPase component
YP_001310383.1	PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC3414 ABC-type multidrug/protein/lipid transport system, ATPase component
YP_001310384.1	PFAM: regulatory protein, MarR; KEGG: cac:CAC3413 transcriptional regulator, MarR/EmrR family
YP_001310385.1	KEGG: ctc:CTC00453  sialidase
YP_001310386.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: cac:CAC2702 possible signal transduction protein (containing EAL, CBS and GGDEF domains)
YP_001310387.1	KEGG: cac:CAC3401 predicted membrane protein
YP_001310388.1	KEGG: cno:NT01CX_0007 hypothetical protein
YP_001310389.1	KEGG: cpf:CPF_0796 hypothetical protein
YP_001310390.1	PFAM: beta-lactamase domain protein; KEGG: cac:CAC1386 Zn-dependent hydrolase, glyoxylase family
YP_001310391.1	PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY1091 hypothetical protein
YP_001310392.1	PFAM: ABC transporter transmembrane protein; ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY1090 hypothetical protein
YP_001310393.1	PFAM: regulatory protein, MerR; KEGG: oih:OB0785 transcriptional regulator
YP_001310394.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rle:RL1385  short-chain dehydrogenase/oxidoreductase
YP_001310396.1	KEGG: spo:SPBC582.06c hypothetical protein
YP_001310397.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tdn:Tmden_1328 diguanylate cyclase (GGDEF domain)
YP_001310398.1	PFAM: helix-turn-helix, HxlR type; KEGG: cac:CAC0195 predicted transcriptional regulator
YP_001310399.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cac:CAC0196 NADH-dependent flavine oxidoreductase
YP_001310400.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cac:CA_P0029 permease MDR-related
YP_001310401.1	PFAM: regulatory protein, TetR; KEGG: cac:CA_P0028 HTH transcriptional regulator TetR family
YP_001310403.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC00942 methyl-accepting chemotaxis protein
YP_001310404.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cno:NT01CX_1433 subtilin biosynthesis sensor protein SpaK
YP_001310405.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cno:NT01CX_1432 subtilin biosynthesis regulatory protein SpaR
YP_001310406.1	KEGG: cno:NT01CX_1431 antibiotic transport-associated permease SpaG/MutG
YP_001310407.1	KEGG: ctc:CTC00626 lantibiotic permease spaE/mutE
YP_001310408.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ctc:CTC00625 lantibiotic transport ATP-binding protein spaF/mutF
YP_001310409.1	PFAM: protein of unknown function DUF975; KEGG: btk:BT9727_4984 hypothetical protein
YP_001310410.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cac:CAC0460 CBS-domain containing protein, YHDP B.subtilis ortholog
YP_001310411.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: dsy:DSY4471 hypothetical protein
YP_001310412.1	PFAM: glutaredoxin 2; Thioredoxin domain; KEGG: dsy:DSY0299 hypothetical protein
YP_001310413.1	PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: dsy:DSY5011 hypothetical protein
YP_001310414.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ctc:CTC01394  taurine transport ATP-binding protein tauB
YP_001310415.1	TIGRFAM: aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3; KEGG: ctc:CTC01393 taurine-binding periplasmic protein precursor
YP_001310416.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ctc:CTC01392 taurine transport system permease tauC
YP_001310418.1	PFAM: regulatory protein, TetR; KEGG: cac:CAC0019 transcriptional regulator, AcrR family
YP_001310419.1	TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cac:CAC0020 MDR-type permease
YP_001310421.1	KEGG: cac:CAC0562 predicted membrane protein
YP_001310422.1	KEGG: ctc:CTC00433 hypothetical protein
YP_001310424.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: sth:STH907 RNA polymerase ECF-type sigma factor
YP_001310425.1	KEGG: cpr:CPR_1341 D-galactose-binding periplasmic protein precursor
YP_001310426.1	TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA subunit; PFAM: PTS system fructose subfamily IIA component; KEGG: yps:YPTB1634 PTS system, mannose-specific IIAB component
YP_001310427.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: cac:CAC3494 transcription regulator, YOBV B.subtilis homolog
YP_001310428.1	KEGG: lsa:LSA0809  DNA alkylation repair enzyme
YP_001310429.1	KEGG: cpe:CPE1341 probable galactoside ABC transporter
YP_001310430.1	TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin, ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: ctc:CTC02454 desulfoferrodoxin homolog
YP_001310431.1	PFAM: MaoC domain protein dehydratase; KEGG: tte:TTE0551 predicted acyl dehydratase
YP_001310432.1	PFAM: Gluconate transporter; Citrate transporter; KEGG: ctc:CTC00709 integral membrane permease
YP_001310433.1	PFAM: coenzyme A transferase; KEGG: ctc:CTC00708 acetyl-coA:acetoacetyl-coA transferase alpha subunit
YP_001310434.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold domain protein; SMART: PAS domain containing protein; ATPase AAA; KEGG: ctc:CTC00707 transcriptional regulatory protein
YP_001310435.1	PFAM: glycoside hydrolase, family 18; SMART: chitinase II; KEGG: bha:BH0916 chitinase
YP_001310436.1	PFAM: NADPH-dependent FMN reductase; KEGG: cac:CAC3486 multimeric flavodoxin WrbA family protein
YP_001310437.1	PFAM: helix-turn-helix, HxlR type; KEGG: cac:CAC3487 predicted transcriptional regulator
YP_001310438.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01211 methyl-accepting chemotaxis protein TlpA
YP_001310440.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cac:CAC1507 sensory transduction histidine kinase (with HAMP domain)
YP_001310441.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC1506 response regulator (CheY-like receiver domain and a HTH)
YP_001310442.1	PFAM: cyclic nucleotide-binding; KEGG: bcz:BCZK3165 possible transcriptional regulator; cyclic nucleotide-binding domain protein
YP_001310443.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cpr:CPR_0743 HAD superfamily (subfamily IA) hydrolase, TIGR02254
YP_001310444.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_2017 choline binding protein A
YP_001310445.1	PFAM: CBS domain containing protein; MgtE intracellular region; PRC-barrel domain protein; KEGG: cno:NT01CX_1389 magnesium transporter
YP_001310446.1	PFAM: natural resistance-associated macrophage protein; KEGG: cac:CAC3329  Mn transporter NRAMP family
YP_001310447.1	PFAM: cell cycle protein; KEGG: cno:NT01CX_1695 rod shape-determining protein RodA
YP_001310448.1	PFAM: LacI family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; KEGG: oih:OB2705 transcriptional regulator
YP_001310449.1	PFAM:  sugar-specific permease, SgaT/UlaA; KEGG: gka:GK2016  PTS system, unknown pentitol phosphotransferase enzyme IIC component
YP_001310450.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: vvu:VV2_0912 hypothetical protein
YP_001310451.1	TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; KEGG: oih:OB0493 hypothetical conserved protein
YP_001310452.1	PFAM: Ribose/galactose isomerase; KEGG: cac:CAC2606 hypothetical protein
YP_001310453.1	Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate
YP_001310454.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: cac:CAC2608 trancriptional regulator of AraC family
YP_001310455.1	PFAM: Peptidoglycan-binding domain 1 protein; KEGG: psp:PSPPH_2396 prophage PSPPH04,  lysozyme
YP_001310456.1	KEGG: dsy:DSY1061 hypothetical protein
YP_001310457.1	TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cth:Cthe_2100 transcriptional regulator, AbrB family
YP_001310458.1	PFAM: protein of unknown function DUF1646; KEGG: tte:TTE2541 hypothetical protein
YP_001310459.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: cth:Cthe_0511 histidine kinase
YP_001310460.1	KEGG: cpf:CPF_0994 hypothetical protein
YP_001310461.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pau:PA14_40700 hypothetical protein
YP_001310462.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_0345 choline binding protein C
YP_001310463.1	KEGG: cpr:CPR_C0052 hypothetical protein
YP_001310464.1	KEGG: cpr:CPR_C0053 hypothetical protein
YP_001310465.1	TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; Ig domain protein, group 2 domain protein; KEGG: cac:CAC3086 protein containing cell adhesion domain
YP_001310467.1	KEGG: cth:Cthe_2496 hypothetical protein
YP_001310468.1	KEGG: mba:Mbar_A0416 hypothetical protein
YP_001310469.1	KEGG: bca:BCE_4654 hypothetical protein
YP_001310470.1	KEGG: cvi:CV0418 probable tail fiber-related protein
YP_001310471.1	KEGG: ctc:CTC02112 phage-like element pbsx protein XkdT
YP_001310472.1	PFAM: Baseplate J family protein; KEGG: ctc:CTC02115 phage-like element pbsx protein XkdT
YP_001310473.1	KEGG: ctc:CTC02116 phage-like element pbsx protein XkdS
YP_001310475.1	KEGG: ctc:CTC02117 phage-like element pbsx protein XkdQ
YP_001310476.1	KEGG: bsu:BG11287 unknown
YP_001310477.1	KEGG: sak:SAK_0756 prophage LambdaSa04, tail tape measure protein, TP901 family
YP_001310478.1	PFAM: Phage XkdN-like protein; KEGG: ctc:CTC02122 hypothetical protein
YP_001310479.1	KEGG: ctc:CTC02124 phage-like element pbsx protein XkdM
YP_001310480.1	KEGG: ctc:CTC02125 phage-like element pbsx protein XkdK
YP_001310482.1	KEGG: ago:AGOS_AFL125W AFL125Wp
YP_001310484.1	in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate; functions in tRNA splicing; the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown
YP_001310485.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ana:alr4878 two-component hybrid sensor and regulator
YP_001310486.1	KEGG: tcx:Tcr_2180 PAS/PAC sensor hybrid histidine kinase
YP_001310487.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cth:Cthe_0511 histidine kinase
YP_001310488.1	TIGRFAM: RNA polymerase sigma-70; KEGG: cno:NT01CX_1545 sigma-70 region 2 domain protein
YP_001310489.1	PFAM: NHL repeat containing protein; cell wall binding repeat-containing protein; KEGG: spd:SPD_0126 pneumococcal surface protein A
YP_001310490.1	KEGG: ddi:DDBDRAFT_0188052 hypothetical protein
YP_001310492.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: cac:CAC0875 predicted permease
YP_001310493.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bsu:BG12130 similar to transcriptional regulator (AraC/XylS family)
YP_001310494.1	KEGG: cac:CAC0785 hypothetical protein
YP_001310495.1	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: csa:Csal_2719 transcriptional regulator, AraC family
YP_001310496.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: btl:BALH_2175 transporter LysE family
YP_001310497.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC1921 acetyltransferase, GNAT family
YP_001310498.1	PFAM: Protein of unknown function DUF1963; KEGG: cac:CAC0820 conserved protein, ortholog YwqG B.subtilis
YP_001310500.1	PFAM: nitroreductase; KEGG: chy:CHY_1798 nitroreductase
YP_001310501.1	KEGG: mla:Mlab_0185 hypothetical protein
YP_001310502.1	PFAM: Protein of unknown function DUF1847; KEGG: mmp:MMP0851 hypothetical protein
YP_001310503.1	KEGG: bld:BLi02197 hypothetical protein
YP_001310504.1	KEGG: cpe:CPE1341 probable galactoside ABC transporter
YP_001310505.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: bcl:ABC3710 transcriptional regulator, LysR family
YP_001310506.1	PFAM: Phosphoglycerate mutase; KEGG: ctc:CTC02637 phosphoglycerate mutase
YP_001310508.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: swo:Swol_2168 iron-binding protein, hemerythrin
YP_001310509.1	PFAM: GCN5-related N-acetyltransferase; KEGG: fnu:FN1294 ribosomal-protein-alanine acetyltransferase
YP_001310510.1	KEGG: cac:CAC3398 uncharacterized conserved protein, YbhB family
YP_001310511.1	PFAM: helix-turn-helix, HxlR type; KEGG: cac:CAC3399 predicted transcriptional regulator
YP_001310512.1	KEGG: det:DET0571 hypothetical protein
YP_001310513.1	KEGG: ssp:SSP1337  ABC transporter permease
YP_001310514.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: btl:BALH_4326 ABC transporter ATP-binding protein
YP_001310515.1	TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: cth:Cthe_1582 cytidine deaminase
YP_001310516.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: dsy:DSY1618 hypothetical protein
YP_001310517.1	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: dsy:DSY1619 hypothetical protein
YP_001310518.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bat:BAS3152 glyoxylase family protein
YP_001310519.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: cac:CAC2692 O-acetyltransferase, from isoleucine patch superfamily
YP_001310520.1	PFAM: major facilitator superfamily MFS_1; KEGG: deh:cbdb_A1621 major facilitator family transporter
YP_001310521.1	PFAM: helix-turn-helix- domain containing protein, AraC type; Cupin 2, conserved barrel domain protein; KEGG: bad:BAD_1048 hypothetical protein
YP_001310522.1	KEGG: tte:TTE2242 transposase
YP_001310523.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bha:BH1786 transcriptional regulator (AraC/XylS family)
YP_001310524.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mmp:MMP0438  hypothetical protein
YP_001310526.1	PFAM: small multidrug resistance protein; KEGG: rpb:RPB_3160 small multidrug resistance protein
YP_001310527.1	PFAM: Radical SAM domain protein; KEGG: cpf:CPF_1039 radical SAM domain protein
YP_001310528.1	KEGG: cac:CA_P0113 solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta
YP_001310529.1	KEGG: rno:684690 hypothetical protein LOC684690
YP_001310530.1	PFAM: NUDIX hydrolase; KEGG: fra:Francci3_0900 NUDIX hydrolase
YP_001310531.1	KEGG: bha:BH2521 transposase (21)
YP_001310532.1	KEGG: bha:BH2520 transposase related protein (20)
YP_001310534.1	PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; KEGG: dsy:DSY2786 hypothetical protein
YP_001310535.1	PFAM: peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; KEGG: dsy:DSY2787 hypothetical protein
YP_001310536.1	PFAM: regulatory protein, MerR; KEGG: cno:NT01CX_0956 HTH-type transcriptional activator TipA
YP_001310537.1	PFAM: helix-turn-helix domain protein; KEGG: cpe:CPE0258 probable transcriptional regulator
YP_001310539.1	KEGG: cac:CAC0777 acetyltransferase (the isoleucine patch superfamily)
YP_001310540.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_0807 4Fe-4S ferredoxin, iron-sulfur binding protein
YP_001310541.1	PFAM: SMC domain protein; SMART: ATPase AAA; KEGG: rme:Rmet_4896 SMC protein-like protein
YP_001310543.1	PFAM: Abortive infection protein; KEGG: pai:PAE1905 P.aerophilum family 322 protein part 2, authentic frameshift
YP_001310544.1	PFAM: Tellurite resistance protein TehB; Methyltransferase type 12; KEGG: cno:NT01CX_2005 hypothetical protein
YP_001310545.1	KEGG: btl:BALH_2706 glycosyl transferase, group 2 family protein
YP_001310546.1	KEGG: bcz:BCZK1755 hypothetical protein
YP_001310547.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: bsu:BG14032 similar to transcriptional regulator (LysR family)
YP_001310548.1	PFAM: regulatory protein, MerR; KEGG: dsy:DSY3460 hypothetical protein
YP_001310549.1	KEGG: cac:CAC3664 predicted flavodoxin
YP_001310550.1	PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: hch:HCH_00674 signal transduction histidine kinase
YP_001310551.1	PFAM: domain of unknown function DUF1745; KEGG: sde:Sde_1899 hypothetical protein
YP_001310552.1	PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; KEGG: mag:amb2955 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
YP_001310553.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: cac:CA_P0043 membrane flavodoxin oxidoreductase
YP_001310554.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mst:Msp_1513 hypothetical membrane-spanning protein
YP_001310555.1	PFAM: polysaccharide deacetylase; KEGG: cno:NT01CX_1505 predicted xylanase/chitin deacetylase
YP_001310556.1	PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: smu:SMU.296 hypothetical protein
YP_001310557.1	KEGG: ctc:CTC01436 hypothetical protein
YP_001310559.1	PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY1381 hypothetical protein
YP_001310560.1	PFAM: regulatory protein, MarR; KEGG: cac:CAC3418 transcriptional regulator, MarR/EmrR family
YP_001310561.1	PFAM: UbiE/COQ5 methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: cac:CAC3419 S-adenosylmethionine-dependent methyltransferase
YP_001310562.1	TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; KEGG: cac:CAC2474 N-formylmethionyl-tRNA deformylase
YP_001310563.1	PFAM: helix-turn-helix domain protein; KEGG: cac:CAC2473 predicted transcriptional regulator
YP_001310564.1	PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: cac:CAC3495 multimeric flavodoxin WrbA family protein
YP_001310565.1	PFAM: helix-turn-helix, HxlR type; KEGG: cac:CAC3496 predicted transcriptional regulator
YP_001310566.1	PFAM: chemotaxis sensory transducer; KEGG: cac:CAC0741 methyl-accepting chemotaxis protein
YP_001310567.1	KEGG: cpf:CPF_0995 hypothetical protein
YP_001310570.1	PFAM: protein of unknown function DUF692; KEGG: cac:CAC2465 hypothetical protein
YP_001310571.1	PFAM: major facilitator superfamily MFS_1; KEGG: bce:BC2673 tetracycline resistance determinant TetV
YP_001310572.1	SMART: regulatory protein, MerR; KEGG: btk:BT9727_2442 possible transcriptional regulator, MerR family
YP_001310573.1	TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: cac:CAC3446 predicted epimerase, PhzC/PhzF homolog
YP_001310574.1	PFAM: beta-lactamase domain protein; KEGG: ctc:CTC01895 metal dependent hydrolase
YP_001310575.1	PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: cpe:CPE0406 probable reticuline oxidase
YP_001310576.1	PFAM: ROK family protein; KEGG: cac:CAC1523 fructokinase
YP_001310577.1	KEGG: bad:BAD_1588 hypothetical protein
YP_001310578.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dge:Dgeo_0589 binding-protein-dependent transport systems inner membrane component
YP_001310579.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3068 ABC transporter permease, MalFG family
YP_001310580.1	PFAM: extracellular solute-binding protein, family 1; KEGG: pfu:PF1739 trehalose/maltose binding protein
YP_001310581.1	PFAM: histidine kinase internal region; KEGG: ctc:CTC01848 two-component sensor kinase YesM
YP_001310582.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: cpf:CPF_1111 transcriptional regulator, AraC family
YP_001310583.1	PFAM: LytTr DNA-binding region; KEGG: lmf:LMOf2365_1005 hypothetical protein
YP_001310584.1	KEGG: lme:LEUM_0980 hypothetical protein
YP_001310585.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: tte:TTE0987 transcriptional regulator
YP_001310586.1	PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pol:Bpro_3220 phosphonoacetate hydrolase
YP_001310587.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: afu:AF0813 phosphoglycerate dehydrogenase (SerA)
YP_001310588.1	PFAM: Radical SAM domain protein; KEGG: cac:CAC3492 hypothetical protein
YP_001310589.1	PFAM: protein of unknown function DUF1234; KEGG: sme:SMc00505 hypothetical protein
YP_001310590.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_001310591.1	PFAM: aldo/keto reductase; KEGG: cac:CAC1958 predicted aldo/keto reductase, YTBE/YVGN B.subtilis ortholog
YP_001310592.1	PFAM: ArsR family transcriptional regulator; KEGG: bca:BCE_4519 transcriptional regulator, ArsR family
YP_001310593.1	KEGG: swo:Swol_2470 hypothetical protein
YP_001310594.1	KEGG: dsy:DSY1145 hypothetical protein
YP_001310595.1	PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising protein, mobile region; KEGG: cac:CAC0534 phosphoenolpyruvate synthase (gene pps)
YP_001310596.1	PFAM: ROK family protein; KEGG: bha:BH0797 glucose kinase
YP_001310597.1	PFAM: Aldose 1-epimerase; KEGG: cac:CAC0697 galactose mutarotase related enzyme
YP_001310598.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: tte:TTE2591 N-methylhydaintoinase A
YP_001310599.1	PFAM: helix-turn-helix protein RpiR; KEGG: ppe:PEPE_0151 transcriptional regulator
YP_001310600.1	KEGG: tte:TTE2590 hypothetical protein
YP_001310601.1	PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: tte:TTE2594  transporter protein
YP_001310602.1	KEGG: tte:TTE2589 hypothetical protein
YP_001310603.1	PFAM: chemotaxis sensory transducer; KEGG: tte:TTE2231 methyl-accepting chemotaxis protein
YP_001310604.1	PFAM: nitroreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cac:CAC2933 ferredoxin-like domain fused to nitroreductase-like domain
YP_001310605.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: reh:H16_B1990  oxidoreductase
YP_001310606.1	PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: mmp:MMP0887 hypothetical protein
YP_001310607.1	TIGRFAM:  transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cac:CAC3525 uncharacterized conserved protein, YjeB/RRF2 family
YP_001310608.1	PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: cac:CAC3526 FMN-binding protein
YP_001310609.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cac:CAC3527 ferredoxin
YP_001310610.1	catalyzes the reduction of alpha, beta-unsaturated aldehydes and ketones; reduces the nitro group nitroester and nitroaromatic compounds
YP_001310611.1	PFAM: helix-turn-helix, HxlR type; KEGG: bce:BC0856 transcriptional regulator, MarR family
YP_001310612.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: cpr:CPR_0708 transcriptional regulator, DeoR family
YP_001310613.1	PFAM: protein of unknown function DUF1648; KEGG: mla:Mlab_0304 hypothetical protein
YP_001310614.1	PFAM: ArsR family transcriptional regulator; Helix-turn-helix, type 11 domain protein; KEGG: mla:Mlab_0303 hypothetical protein
YP_001310615.1	KEGG: ctc:CTC01816 hypothetical protein
YP_001310616.1	TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4 type 2; KEGG: ctc:CTC01788 RNA polymerase sigma-70 factor
YP_001310617.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC1476 proline/glycine betaine ABC-type transport system, permease component
YP_001310618.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC1475 proline/glycine betaine ABC transport system, ATPase component
YP_001310619.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cac:CAC1474 proline/glycine betaine ABC transport system, periplasmic component
YP_001310620.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC1473 proline/glycine betaine ABC-type transport system, permease component
YP_001310621.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cth:Cthe_1842 O-acetylhomoserine/O-acetylserine sulfhydrylase
YP_001310622.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_2239 4Fe-4S ferredoxin, iron-sulfur binding protein
YP_001310623.1	PFAM: aminoglycoside phosphotransferase; KEGG: dsy:DSY3609 hypothetical protein
YP_001310624.1	PFAM: conserved hypothetical protein CHP02464; KEGG: cpr:CPR_0151 protein T24A6.7
YP_001310625.1	PFAM: protein of unknown function DUF89; KEGG: tma:TM0176 hypothetical protein
YP_001310626.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_2566 radical SAM
YP_001310627.1	PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY0155 hypothetical protein
YP_001310628.1	KEGG: dsy:DSY0156 hypothetical protein
YP_001310629.1	KEGG: ctc:CTC00840 hypothetical protein
YP_001310630.1	KEGG: dsy:DSY1203 hypothetical protein
YP_001310631.1	KEGG: cth:Cthe_0028 uncharacterized protein, YcgL-like protein
YP_001310632.1	KEGG: bce:BC0397 hypothetical cytosolic protein
YP_001310634.1	PFAM: protein of unknown function UPF0027; KEGG: cth:Cthe_0250 protein of unknown function UPF0027
YP_001310635.1	PFAM: TROVE domain protein; KEGG: cth:Cthe_2764 TROVE domain containing protein
YP_001310636.1	KEGG: cth:Cthe_2763 hypothetical protein
YP_001310637.1	KEGG: cth:Cthe_2762 transcriptional regulator-like protein
YP_001310638.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bth:BT_2381  acetyltransferase
YP_001310639.1	Catalyzes the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate
YP_001310640.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: lac:LBA1723 transposase
YP_001310641.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_001310642.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cpf:CPF_1057 sensor histidine kinase
YP_001310643.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_1056 DNA-binding response regulator
YP_001310644.1	KEGG: cpf:CPF_1055 UBA/Ts-N domain protein
YP_001310645.1	KEGG: cpf:CPF_1054 UBA/Ts-N domain protein
YP_001310646.1	KEGG: ctc:CTC01787 hypothetical protein
YP_001310647.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001310648.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FMN-binding domain protein; KEGG: cac:CAC2762 polyferredoxin
YP_001310649.1	PFAM: FMN-binding domain protein; KEGG: dsy:DSY4227 hypothetical protein
YP_001310650.1	PFAM: ApbE family lipoprotein; KEGG: cac:CAC2766 thiamine biosynthesis lipoprotein ApbE
YP_001310651.1	PFAM: transcriptional regulator PadR family protein; KEGG: cpe:CPE0704 30S ribosomal protein homolog
YP_001310652.1	KEGG: cpf:CPF_0700 hypothetical protein
YP_001310653.1	KEGG: ctc:CTC01787 hypothetical protein
YP_001310654.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001310655.1	PFAM: regulatory protein, TetR; KEGG: cac:CAC0201 transcriptional regulators, AcrR family
YP_001310656.1	KEGG: cac:CAC0722 predicted membrane protein; CF-9 family
YP_001310657.1	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: dge:Dgeo_2236 transcriptional regulator, AraC family
YP_001310658.1	PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: mac:MA0445 iron-sulfur flavoprotein
YP_001310659.1	KEGG: cpf:CPF_0183 hypothetical protein
YP_001310660.1	PFAM:  cell wall binding repeat-containing protein; KEGG: tte:TTE1079 beta-lactamase regulatory protein 1
YP_001310661.1	PFAM: alpha/beta hydrolase fold; KEGG: dsy:DSY1555 hypothetical protein
YP_001310662.1	PFAM: alpha/beta hydrolase fold; KEGG: btl:BALH_2130 alpha/beta hydrolase
YP_001310664.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cpr:CPR_2063 polyferredoxin
YP_001310666.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: cac:CAC3360 transcriptional regulator, LysR family
YP_001310667.1	PFAM: nitroreductase; KEGG: bth:BT_1148  NADH dehydrogenase/NAD(P)H nitroreductase
YP_001310668.1	TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: tte:TTE2372 lysyl-tRNA synthetase class II
YP_001310669.1	PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: smu:SMU.296 hypothetical protein
YP_001310670.1	KEGG: bcl:ABC0634 transcriptional regulator, TetR family
YP_001310671.1	PFAM: transcriptional regulator PadR family protein; KEGG: cac:CAC0530 hypothetical protein
YP_001310672.1	PFAM: protein of unknown function DUF303, acetylesterase KEGG: cac:CAC0529 acetylxylan esterase related enzyme
YP_001310673.1	PFAM: flavin reductase domain protein, FMN-binding; KEGG: mac:MA2295 flavoredoxin Flr
YP_001310674.1	PFAM: regulatory protein, MerR; KEGG: lbr:LVIS_2182 predicted transcriptional regulator
YP_001310675.1	TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; KEGG: bsu:BG12306 glutamate racemase
YP_001310676.1	PFAM: nitroreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cac:CAC2933 ferredoxin-like domain fused to nitroreductase-like domain
YP_001310677.1	PFAM: regulatory protein, TetR; KEGG: bja:bll5689 transcriptional regulatory protein
YP_001310678.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rru:Rru_A2227 GCN5-related N-acetyltransferase
YP_001310679.1	PFAM: protein of unknown function DUF421; KEGG: cac:CAC1521 uncharacterized membrane protein, YetF/YdfS/YkjA/YrbG/YdfR B.subtilis ortholog
YP_001310680.1	KEGG: bcl:ABC1987 hypothetical protein
YP_001310682.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY1008 hypothetical protein
YP_001310683.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: lmo:lmo0364 hypothetical protein
YP_001310684.1	PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: bca:BCE_3147 Tn554-related, transposase A
YP_001310685.1	PFAM: phage integrase family protein; KEGG: sep:SE1612 transposition regulatory protein TnpB
YP_001310686.1	KEGG: bca:BCE_A0002 Tn554-related, transposase C
YP_001310688.1	KEGG: bce:BC3594 PhnB protein
YP_001310689.1	KEGG: pde:Pden_0118 hypothetical protein
YP_001310690.1	KEGG: bld:BLi00263 hypothetical protein
YP_001310691.1	TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; SEC-C motif domain protein; KEGG: cpe:CPE1382 probable methionine aminopeptidase
YP_001310692.1	PFAM: helix-turn-helix domain protein; KEGG: atc:AGR_C_2728 hypothetical protein
YP_001310693.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility C-terminal domain; KEGG: cac:CAC3503 nucleoside-diphosphate-sugar epimerase
YP_001310694.1	PFAM: regulatory protein, TetR; KEGG: cac:CAC3504 transcriptional regulator, AcrR family
YP_001310695.1	PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: cac:CAC3495 multimeric flavodoxin WrbA family protein
YP_001310696.1	PFAM: helix-turn-helix, HxlR type; KEGG: dsy:DSY0078 hypothetical protein
YP_001310697.1	KEGG: ctc:CTC00617 hypothetical protein
YP_001310698.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sth:STH169 RNA polymerase ECF-type sigma factor
YP_001310700.1	KEGG: pfa:MAL13P1.145 hypothetical protein
YP_001310701.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC00924 methyl-accepting chemotaxis protein
YP_001310702.1	KEGG: dsy:DSY1946 hypothetical protein
YP_001310703.1	KEGG: dsy:DSY4483 hypothetical protein
YP_001310704.1	TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; KEGG: cpf:CPF_1346 transcriptional regulator, MerR family
YP_001310705.1	KEGG: cac:CA_P0077 uncharacterized Fe-S protein
YP_001310706.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_001310707.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: stm:STM2644  transcriptional regulator
YP_001310709.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bcl:ABC1107 short-chain alcohol dehydrogenase
YP_001310710.1	PFAM: regulatory protein, MerR; KEGG: lmf:LMOf2365_1497 transcriptional regulator, MerR family
YP_001310711.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cno:NT01CX_1345 cation efflux family protein
YP_001310712.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cac:CAC2485 predicted membane protein, probable cation efflux pump (MDR-type)
YP_001310713.1	PFAM: regulatory protein, MarR; KEGG: cac:CAC2486 transcriptional regulator, MarR/EmrR family
YP_001310714.1	PFAM: Lytic transglycosylase, catalytic
YP_001310715.1	PFAM: VanZ family protein; KEGG: ctc:CTC01417 hypothetical protein
YP_001310716.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: dsy:DSY3551 hypothetical protein
YP_001310717.1	catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin
YP_001310718.1	PFAM: nitroreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cac:CAC3483 nitroreductase fused to ferredoxin domain
YP_001310719.1	PFAM: regulatory protein, TetR; KEGG: lsa:LSA0965  transcriptional regulator, TerR family
YP_001310720.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mla:Mlab_0618 hypothetical protein
YP_001310721.1	PFAM: regulatory protein, TetR; KEGG: cac:CAC0723 transcriptional regulator, AcrR family
YP_001310722.1	KEGG: cac:CAC2505 uncharacterized membrane protein, YXJN B.subtilis homolog
YP_001310723.1	PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: aba:Acid345_1952 isoprenylcysteine carboxyl methyltransferase
YP_001310724.1	PFAM: regulatory protein, MarR; KEGG: lmo:lmo0840 hypothetical protein
YP_001310725.1	PFAM: regulatory protein, TetR; KEGG: ava:Ava_2488 transcriptional regulator, TetR family
YP_001310726.1	PFAM: major facilitator superfamily MFS_1; KEGG: pub:SAR11_0830 probable MFS transporter (major facilitator superfamily)
YP_001310727.1	PFAM: extracellular solute-binding protein, family 3; KEGG: bja:blr2224 ABC transporter amino acid-binding protein
YP_001310729.1	PFAM: LytTr DNA-binding region; KEGG: lmf:LMOf2365_1005 hypothetical protein
YP_001310730.1	KEGG: rpa:RPA2585 hypothetical protein
YP_001310731.1	KEGG: pca:Pcar_2448 predicted iron-sulfur flavoprotein
YP_001310732.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: ade:Adeh_1435 protein of unknown function DUF6, transmembrane
YP_001310733.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: llm:llmg_0247  UDP-glucose 4-epimerase
YP_001310734.1	SMART: helix-turn-helix domain protein; KEGG: rle:RL4049 hypothetical protein
YP_001310735.1	PFAM: 60 kDa inner membrane insertion protein; KEGG: hpa:HPAG1_1376 60 kDa inner-membrane protein
YP_001310736.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: btk:BT9727_2340 sensor histidine kinase
YP_001310737.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bcz:BCZK2302 DNA-binding response regulator
YP_001310738.1	PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin; KEGG: bld:BLi02284 YodJ
YP_001310739.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ctc:CTC00159 sensory transduction protein kinase
YP_001310741.1	KEGG: cac:CAC0862 transmembrane protein
YP_001310742.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC0861 ABC-type multidrug transport system, ATPase component
YP_001310743.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC0860 two-component response regulator
YP_001310744.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: mta:Moth_2231 RNA-directed DNA polymerase (reverse transcriptase)
YP_001310745.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC1387 membrane associated chemotaxis sensory transducer protein (MSP domain and HamP domain)
YP_001310746.1	KEGG: ctc:CTC01609 hypothetical protein
YP_001310747.1	PFAM: Choloylglycine hydrolase; KEGG: bld:BLi04217 YxeI
YP_001310748.1	KEGG: bca:BCE_1830 hypothetical protein
YP_001310749.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001310751.1	KEGG: chy:CHY_0145 hypothetical protein
YP_001310752.1	KEGG: ctc:CTC01989 transposase-related protein
YP_001310753.1	PFAM: Integrase, catalytic region; KEGG: ctc:CTC01990  transposase
YP_001310756.1	KEGG: pfa:MAL13P1.323 hypothetical protein
YP_001310757.1	KEGG: cac:CAC0029 distantly related to cell wall-associated hydrolase, similar to YycO Bacillus subtilis
YP_001310758.1	SMART: ATPase AAA; KEGG: btl:BALH_2727 ABC transporter ATP-binding protein
YP_001310759.1	KEGG: cpr:CPR_1980 permease,  domain protein
YP_001310760.1	KEGG: cac:CAC3614 uncharacterized conserved membrane protein, possible permease
YP_001310763.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cth:Cthe_0384 ABC transporter protein
YP_001310764.1	PFAM: protein of unknown function DUF214; KEGG: btl:BALH_2728 ABC transporter permease
YP_001310765.1	PFAM: protein of unknown function DUF214; KEGG: cpr:CPR_1981 permease,  domain protein
YP_001310766.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC0773 ABC-type cobalt transport protein ATPase component
YP_001310767.1	PFAM: cobalt transport protein; KEGG: cac:CAC0772 cobalt permease
YP_001310768.1	catalyzes the ATP-dependent transport of cobalt
YP_001310769.1	TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: sat:SYN_00599 Ni2+ insertion GTPase
YP_001310770.1	KEGG: cth:Cthe_1015 hypothetical protein
YP_001310771.1	PFAM: regulatory protein, MarR; KEGG: cac:CAC3406 transcriptional regulator, MarR/EmrR family
YP_001310772.1	PFAM: beta-lactamase; KEGG: bld:BLi00328 hypothetical protein
YP_001310773.1	PFAM: protein of unknown function DUF445; KEGG: btl:BALH_1569 hypothetical protein
YP_001310774.1	PFAM: ApbE family lipoprotein; KEGG: tte:TTE2482 Membrane-associated lipoprotein involved in thiamine biosynthesis
YP_001310775.1	PFAM: periplasmic binding protein; KEGG: cpr:CPR_1115 iron compound ABC transporter iron-binding protein
YP_001310776.1	PFAM: transport system permease; KEGG: cpr:CPR_1116 ABC transporter permease, FecCD family
YP_001310777.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpe:CPE1043 probable iron(III) dicitrate transport system
YP_001310778.1	KEGG: fnu:FN2046 acetyltransferase
YP_001310779.1	KEGG: sth:STH2320 LuxR family transcriptional regulator
YP_001310780.1	TIGRFAM: diguanylate cyclase; SMART: GGDEF domain containing protein; KEGG: cac:CAC3544 membrane associated GGDEF domain containing protein
YP_001310781.1	KEGG: btl:BALH_2820 possible transporter
YP_001310782.1	KEGG: cpr:CPR_0183 cobalt/cobalamin transport protein CbiN
YP_001310783.1	TIGRFAM: cobalamin biosynthesis protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dsy:DSY1479 cobalamin biosynthesis protein CbiM
YP_001310784.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mac:MA3551 cobalt ABC transporter ATP-binding protein
YP_001310785.1	TIGRFAM: cobalt ABC transporter inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cpr:CPR_0184 cobalt ABC transporter permease CbiQ
YP_001310786.1	PFAM: protein of unknown function DUF1540; KEGG: cpf:CPF_0355 hypothetical protein
YP_001310788.1	KEGG: pfl:PFL_2781 hypothetical protein
YP_001310789.1	PFAM: Domain of unknown function DUF1835; KEGG: cno:NT01CX_2353 hypothetical protein
YP_001310790.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pau:PA14_63410 hypothetical protein
YP_001310791.1	KEGG: cpf:CPF_0742 hypothetical protein
YP_001310792.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: lwe:lwe2312 maltose transacetylase
YP_001310793.1	KEGG: cpe:CPE0580 probable iron-sulfur binding reductase
YP_001310794.1	PFAM: LytTr DNA-binding region; KEGG: lmf:LMOf2365_1005 hypothetical protein
YP_001310797.1	PFAM: aldo/keto reductase; KEGG: zmo:ZMO1344 2,5-diketo-D-gluconate reductase
YP_001310798.1	PFAM: Peptidoglycan-binding domain 1 protein; Domain of unknown function DUF1906; KEGG: bsu:BG12736 hypothetical protein
YP_001310801.1	PFAM: glycoside hydrolase, family 25; KEGG: cpf:CPF_0973 glycosyl hydrolase, family 25
YP_001310803.1	KEGG: ctc:CTC01083 hypothetical protein
YP_001310804.1	KEGG: cpr:CPR_C0032 hypothetical protein
YP_001310805.1	SMART: ATPase AAA; KEGG: bha:BH3541 hypothetical protein
YP_001310806.1	KEGG: lin:lin0086 hypothetical protein
YP_001310808.1	PFAM: helix-turn-helix domain protein
YP_001310809.1	PFAM: major facilitator superfamily MFS_1; KEGG: cac:CAC0762 permease, probably tetracycline resistance protein
YP_001310810.1	PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: mac:MA0445 iron-sulfur flavoprotein
YP_001310811.1	PFAM: YibE/F family protein; KEGG: cac:CAC0206 hypothetical protein
YP_001310812.1	PFAM: metallophosphoesterase; KEGG: cac:CAC0205 predicted phosphohydrolase, Icc family
YP_001310813.1	PFAM: regulatory protein, MarR; KEGG: cac:CAC0763 transcriptional regulator, MarR family
YP_001310814.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bfs:BF0801  phosphoglycolate phosphatase
YP_001310815.1	KEGG: cac:CAC0207 hypothetical protein, CF-6 family
YP_001310816.1	PFAM: sigma-70 region 4 domain protein; KEGG: ctc:pE88_61 transcriptional activator TetR
YP_001310817.1	KEGG: ctc:pE88_04 UviB homologous protein
YP_001310820.1	KEGG: bld:BLi03761 YwkF
YP_001310822.1	PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY1013 hypothetical protein
YP_001310823.1	PFAM: protein of unknown function DUF1706; KEGG: cno:NT01CX_2000 hypothetical protein
YP_001310824.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mla:Mlab_1725 hypothetical protein
YP_001310825.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: bxe:Bxe_C0569  carboxymuconolactone decarboxylase
YP_001310826.1	KEGG: cac:CAC2531 S-adenosylmethionine-dependent methyltransferase
YP_001310827.1	KEGG: cac:CAC2531 S-adenosylmethionine-dependent methyltransferase
YP_001310829.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: dsy:DSY2733 hypothetical protein
YP_001310830.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: ctc:CTC00439 hypothetical protein
YP_001310831.1	TIGRFAM:  CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: mhu:Mhun_1325 CoA enzyme activase
YP_001310832.1	PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: bsu:BG12424 spore coat protein, similar to reticuline oxidase
YP_001310833.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY1005 hypothetical protein
YP_001310834.1	PFAM: transport system permease; KEGG: dsy:DSY1004 hypothetical protein
YP_001310835.1	PFAM: transport system permease; KEGG: dsy:DSY1003 hypothetical protein
YP_001310836.1	PFAM: periplasmic binding protein; KEGG: dsy:DSY1002 hypothetical protein
YP_001310837.1	TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: dsy:DSY1272 hypothetical protein
YP_001310838.1	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: aor:AO090005000337 beta-glucosidase-related glycosidases Pfam: Glyco_hydro_3 Glyco_hydro_3_C
YP_001310839.1	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: cpr:CPR_1432 transcriptional regulator, AraC family
YP_001310840.1	PFAM: FMN-binding domain protein; KEGG: cac:CAC2767 hypothetical protein
YP_001310841.1	TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease, EIIA 1 domain; KEGG: tte:TTE0469 Phosphotransferase system IIA components
YP_001310842.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: cpr:CPR_1309 HAD hydrolase, IIB family
YP_001310843.1	PFAM: PRD domain protein; Helix-turn-helix, type 11 domain protein; KEGG: tte:TTE0340  transcriptional regulator
YP_001310844.1	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: efa:EF1238 glycosyl hydrolase, family 3
YP_001310845.1	TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: bcl:ABC1453 PTS system, sucrose-specific enzyme II, BC component
YP_001310846.1	TIGRFAM: sucrose-6-phosphate hydrolase; PFAM: Glycosyl hydrolase family 32, N terminal domain protein; Glycosyl hydrolase family 32, C-terminal domain protein; SMART: glycoside hydrolase, family 32; KEGG: bld:BLi04016 sucrase-6-phosphate hydrolase; RBL02848
YP_001310847.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cac:CAC0565 histidine kinase (HAMP, HisKA and HATPase domains)
YP_001310848.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC00805 two-component response regulator
YP_001310849.1	PFAM: glycosyl transferase, family 39; KEGG: cpr:CPR_0954 dolichyl-phosphate-mannose-protein mannosyltransferase family protein
YP_001310850.1	KEGG: mta:Moth_2226  small multidrug resistance transmembrane protein
YP_001310851.1	PFAM: glycosyl transferase, family 2; KEGG: cth:Cthe_3099 glycosyl transferase, family 2
YP_001310852.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eca:ECA0910  flavoprotein subunit of a reductase
YP_001310853.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_2080 respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
YP_001310854.1	PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: eba:ebA5294 subunit of oxidoreductase of unknown function, conserved in Azoarcus-type benzoate degradation gene clusters
YP_001310855.1	PFAM: regulatory protein, MerR; KEGG: bha:BH3496 transcriptional regulator of multidrug-efflux transporter genes
YP_001310856.1	PFAM: chemotaxis sensory transducer; KEGG: cac:CAC0741 methyl-accepting chemotaxis protein
YP_001310857.1	KEGG: det:DET0571 hypothetical protein
YP_001310858.1	PFAM: LuxR family transcriptional regulator; response regulator receiver; KEGG: cac:CAC2939 response regulator (CheY-like receiver domain and HTH-type DNA-binding domain)
YP_001310859.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: cac:CAC0239 histidine kinase-like ATPase
YP_001310860.1	KEGG: pfa:PF11_0218 hypothetical protein
YP_001310861.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bsu:BG11573 RNA polymerase ECF-type sigma factor
YP_001310862.1	KEGG: cac:CAC0563 predicted membrane protein
YP_001310863.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01211 methyl-accepting chemotaxis protein TlpA
YP_001310864.1	PFAM: MOSC domain containing protein; KEGG: gme:Gmet_0302 MOSC
YP_001310865.1	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: cac:CAC1992 molybdenum cofactor biosynthesis enzyme, MoaC
YP_001310866.1	TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY3488 hypothetical protein
YP_001310867.1	KEGG: pca:Pcar_1839 formate dehydrogenase accessory protein FdhD
YP_001310868.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sth:STH3292 electron transport protein
YP_001310869.1	TIGRFAM: hydrogenase, Fe-only; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: sth:STH3293 iron hydrogenase
YP_001310870.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sth:STH3294 electron transport protein
YP_001310871.1	TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; KEGG: chy:CHY_0800 formate dehydrogenase accessory protein
YP_001310872.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: gsu:GSU3147 molybdopterin-guanine dinucleotide biosynthesis protein MobB
YP_001310873.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: sat:SYN_00272 molybdopterin biosynthesis MoeA protein
YP_001310874.1	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rru:Rru_A0324 formate dehydrogenase, alpha subunit
YP_001310876.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: cac:CAC2022 molybdopterin biosynthesis enzyme, MoaB
YP_001310877.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01881 methyl-accepting chemotaxis protein
YP_001310878.1	KEGG: mst:Msp_1287 hypothetical multicopy protein B 1
YP_001310879.1	PFAM: ATPase AAA, central domain protein; SMART: ATPase AAA; KEGG: bld:BLi04176 hypothetical protein
YP_001310880.1	TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: bld:BLi04172  anaerobic ribonucleoside-triphosphate reductase activating protein
YP_001310881.1	KEGG: pfa:PFL1930w hypothetical protein
YP_001310882.1	KEGG: mst:Msp_1552 hypothetical protein
YP_001310883.1	PFAM: ROK family protein; KEGG: bha:BH0797 glucose kinase
YP_001310884.1	PFAM: phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit; KEGG: cpr:CPR_2600 phosphotransferase system enzyme II, PtcA
YP_001310885.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: lwe:lwe2728 PTS system, beta-glucoside-specific, IIB component
YP_001310886.1	TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system, EIIC; KEGG: lmf:LMOf2365_2774 PTS system, beta-glucoside-specific, IIC component
YP_001310887.1	PFAM: glycoside hydrolase, family 1; KEGG: lin:lin0391 beta-glucosidase
YP_001310888.1	PFAM: GntR family transcriptional regulator; UbiC transcription regulator-associated domain protein; KEGG: lin:lin0390 hypothetical protein
YP_001310889.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: ecj:JW2214 fused response regulator of ato opeon, in two-component system with AtoS
YP_001310890.1	with AtoC is a member of a two-component regulatory system involved in the transcriptional regulation of the ato genes for acetoacetate metabolism
YP_001310891.1	PFAM: coenzyme A transferase; KEGG: ctc:CTC00708 acetyl-coA:acetoacetyl-coA transferase alpha subunit
YP_001310892.1	PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: blo:BL0058 possible butyryl-CoA dehydrogenase
YP_001310893.1	PFAM: short chain fatty acid transporter; KEGG: bur:Bcep18194_B1677 hypothetical protein
YP_001310895.1	PFAM: chemotaxis sensory transducer; KEGG: cac:CAC1524 methyl-accepting chemotaxis-like domain (chemotaxis sensory transducer)
YP_001310896.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_1059 acetyltransferase, GNAT family
YP_001310897.1	KEGG: sth:STH1742 ABC transporter permease
YP_001310898.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mbu:Mbur_1837 ABC transporter ATPase subunit
YP_001310899.1	PFAM: helix-turn-helix domain protein; KEGG: bcz:BCZK3019 DNA-binding protein; possible transcriptional regulator
YP_001310900.1	PFAM: ThiJ/PfpI domain protein; KEGG: bcz:BCZK3357 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
YP_001310902.1	PFAM: DTW domain containing protein; KEGG: ppr:PBPRA0133 hypothetical protein
YP_001310903.1	PFAM: aldehyde dehydrogenase; KEGG: rru:Rru_A0914 aldehyde dehydrogenase
YP_001310904.1	TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: cac:CA_P0163 butyrate-acetoacetate CoA-transferase subunit A
YP_001310905.1	TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: tte:TTE0721 Acyl-CoA:acetate CoA transferase beta subunit
YP_001310906.1	converts acetoacetate to acetone and carbon dioxide
YP_001310907.1	PFAM: peptidase C1A, papain; KEGG: cac:CA_P0004 cysteine protease
YP_001310908.1	PFAM: protein of unknown function DUF975; KEGG: bth:BT_3893 hypothetical protein
YP_001310909.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC3374 predicted acetyltransferase
YP_001310910.1	PFAM: protein of unknown function DUF205; KEGG: cac:CAC2500 hypothetical protein
YP_001310913.1	PFAM: YCII-related; KEGG: cac:CA_P0038 uncharacterized conserved protein, YCII family
YP_001310914.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: vvy:VVA0614 acetyltransferase
YP_001310915.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bca:BCE_1694 acetyltransferase, GNAT family
YP_001310918.1	PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; KEGG: ctc:CTC00639 transcriptional regulatory protein
YP_001310919.1	PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: cpe:CPE0841 two-component sensor histidine kinase
YP_001310920.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_0836 DNA-binding response regulator
YP_001310921.1	KEGG: mba:Mbar_A3209 hypothetical protein
YP_001310922.1	KEGG: mba:Mbar_A3210 hypothetical protein
YP_001310923.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mba:Mbar_A3211 ABC transporter ATP-binding protein
YP_001310924.1	PFAM: protein of unknown function DUF214; KEGG: cpe:CPE0851 probable ABC transporter
YP_001310925.1	KEGG: mba:Mbar_A3210 hypothetical protein
YP_001310926.1	PFAM: protein of unknown function DUF214; KEGG: cpe:CPE0851 probable ABC transporter
YP_001310927.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpf:CPF_0841 ABC transporter ATP-binding protein
YP_001310928.1	PFAM: alpha/beta hydrolase fold; KEGG: atc:AGR_C_3327A hypothetical protein
YP_001310929.1	PFAM: regulatory protein, TetR; KEGG: bcl:ABC0634 transcriptional regulator, TetR family
YP_001310930.1	PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising protein, mobile region; KEGG: tde:TDE0349 phosphoenolpyruvate synthase
YP_001310931.1	PFAM: regulatory protein, MarR; KEGG: lmo:lmo0989 hypothetical protein
YP_001310932.1	PFAM: regulatory protein, TetR; KEGG: dsy:DSY3670 hypothetical protein
YP_001310933.1	PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising protein, mobile region; KEGG: hch:HCH_06026 phosphoenolpyruvate synthase/pyruvate phosphate dikinase
YP_001310934.1	PFAM: regulatory protein, MerR; KEGG: bcl:ABC1108 hypothetical protein
YP_001310935.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gfo:orf2067 zinc-type alcohol dehydrogenase
YP_001310936.1	PFAM: LysR family transcriptional regulator; LysR, substrate-binding; KEGG: bsu:BG10570 similar to transcriptional regulator (LysR family)
YP_001310937.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: cac:CAC2253 membrane-associated sensory histidine kinase-like ATPase
YP_001310938.1	PFAM: LuxR family transcriptional regulator; response regulator receiver; KEGG: cac:CAC0174 response regulator, CheY-like receiver domain and HTH DNA-binding domain
YP_001310939.1	PFAM: glycoside hydrolase, family 3 domain protein; cell wall binding repeat-containing protein; KEGG: tma:TM0025 beta-glucosidase
YP_001310940.1	PFAM:  cell wall binding repeat-containing protein; sugar-binding domain protein; Glycosyl hydrolase family 32, N terminal domain protein; Glycosyl hydrolase family 32, C-terminal domain protein; SMART: glycoside hydrolase, family 32; KEGG: ssa:SSA_2023 fructan beta-fructosidase precursor
YP_001310941.1	TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: msu:MS2377 PTS system, mannose-specific IID component
YP_001310942.1	TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS, sorbose-specific IIC subunit; KEGG: msu:MS2378 PTS system, mannose-specific IIC component
YP_001310943.1	TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PFAM: PTS system sorbose subfamily IIB component; KEGG: yps:YPTB1634 PTS system, mannose-specific IIAB component
YP_001310944.1	TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA subunit; PFAM: PTS system fructose subfamily IIA component; KEGG: lin:lin0777 similar to mannose-specific phosphotransferase system (PTS) component IIA
YP_001310945.1	PFAM: sigma-54 factor, interaction domain-containing protein; PTS system fructose subfamily IIA component; PRD domain protein; SMART: ATPase AAA; KEGG: lwe:lwe0744 transcriptional regulator LevR family
YP_001310946.1	PFAM: PfkB domain protein; KEGG: cpf:CPF_1782 fructokinase
YP_001310947.1	KEGG: bld:BLi04178 hypothetical protein; TIGRFAM: sucrose-6-phosphate hydrolase; PFAM: Glycosyl hydrolase family 32, N terminal domain protein; Glycosyl hydrolase family 32, C-terminal domain protein; SMART: glycoside hydrolase, family 32
YP_001310948.1	PFAM: extracellular solute-binding protein, family 1; KEGG: spn:SP_1796 ABC transporter substrate-binding protein
YP_001310949.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spn:SP_1797 ABC transporter permease
YP_001310950.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spn:SP_1798 ABC transporter permease
YP_001310951.1	PFAM: LacI family transcriptional regulator; KEGG: gka:GK3275 transcriptional regulator (LacI family)
YP_001310952.1	KEGG: pfa:MAL8P1.12 hypothetical protein
YP_001310953.1	KEGG: swo:Swol_0181 ABC-type multidrug transport system permease component
YP_001310954.1	KEGG: swo:Swol_2449 ABC-type multidrug transport system permease component
YP_001310955.1	PFAM: secretion protein HlyD family protein; KEGG: pgi:PG0093 HlyD family secretion protein
YP_001310956.1	KEGG: bld:BLi00563 TetR
YP_001310957.1	PFAM: protein of unknown function DUF1349; KEGG: btk:BT9727_2931 hypothetical protein
YP_001310958.1	PFAM: major facilitator superfamily MFS_1; KEGG: cth:Cthe_2967 major facilitator superfamily MFS_1
YP_001310959.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: plu:plu0475 hypothetical protein
YP_001310960.1	PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: plu:plu0474 hypothetical protein
YP_001310961.1	PFAM: aminotransferase class-III; KEGG: plu:plu0473 hypothetical protein
YP_001310962.1	KEGG: ssa:SSA_0360 conserved uncharacterized protein
YP_001310963.1	PFAM: regulatory protein, MarR; KEGG: ssa:SSA_0255 multiple antibiotic resistance operon transcription repressor (MarR)
YP_001310964.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ddi:DDBDRAFT_0206477 hypothetical protein
YP_001310965.1	PFAM: NADPH-dependent FMN reductase; KEGG: mst:Msp_1469 predicted iron-sulfur flavoprotein
YP_001310966.1	PFAM: transcriptional regulator PadR family protein; KEGG: cac:CAC0832 fusion: transcriptional regulator and conserved domain
YP_001310968.1	PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; KEGG: btl:BALH_2732 transcriptional regulator, AraC family
YP_001310969.1	KEGG: ctc:CTC01816 hypothetical protein
YP_001310970.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: cac:CAC1766 RNA polymerase sigma-70 factor
YP_001310971.1	PFAM: GCN5-related N-acetyltransferase; KEGG: btl:BALH_1852 acetyltransferase, GNAT family
YP_001310972.1	PFAM: LuxR family transcriptional regulator; KEGG: cac:CAC0445 protein, containing LuxR family transcriptional regulator HTH domain
YP_001310973.1	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: pau:PA14_38040  transcriptional regulator, AraC family
YP_001310974.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: nmu:Nmul_A1378 short-chain dehydrogenase/reductase SDR
YP_001310975.1	PFAM: nitroreductase; KEGG: cac:CAC1418 nitroreductase
YP_001310976.1	KEGG: ooe:OEOE_0717 acetyltransferase, including N-acetylase of ribosomal protein
YP_001310977.1	KEGG: lpl:lp_1933 galactoside O-acetyltransferase
YP_001310978.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: lpl:lp_1934 transcription regulator
YP_001310980.1	PFAM: VanZ family protein; KEGG: ctc:CTC01412 hypothetical protein
YP_001310981.1	PFAM: pentapeptide repeat protein; KEGG: fal:FRAAL2569 hypothetical protein
YP_001310982.1	PFAM: transcriptional regulator PadR family protein; KEGG: fal:FRAAL2570  PadR family transcriptional regulator
YP_001310983.1	PFAM: regulatory protein, MarR; KEGG: eba:ebA3908 transcriptional regulator, MarR family
YP_001310984.1	PFAM: major facilitator superfamily MFS_1; KEGG: ssp:SSP2167  permease of the major facilitator superfamily
YP_001310986.1	PFAM: lipolytic protein, G-D-S-L family; KEGG: bld:BLi04100 hypothetical protein
YP_001310988.1	KEGG: ter:Tery_0801  galactoside ABC transporter
YP_001310990.1	PFAM: Phosphoglycerate mutase; KEGG: cac:CAC0167 possible sigma factor, diverged member of sigF/sigE/sigG family
YP_001310991.1	PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: cpf:CPF_0863  sensor histidine kinase
YP_001310992.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cac:CAC3356 lactoylglutathione lyase (LGUL) family protein, diverged
YP_001310993.1	PFAM: cyclase family protein; KEGG: ctc:CTC01833 hypothetical protein
YP_001310994.1	TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: cpr:CPR_0564 signal peptidase I
YP_001310995.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH0433 phosphinothricin N-acetyltransferase
YP_001310997.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: cth:Cthe_0511 histidine kinase
YP_001310998.1	PFAM: alpha/beta hydrolase fold; KEGG: ctc:CTC01150 non-heme chloroperoxidase
YP_001311001.1	KEGG: cpe:CPE1341 probable galactoside ABC transporter
YP_001311002.1	PFAM:  cell wall binding repeat-containing protein; KEGG: dsy:DSY2648 hypothetical protein
YP_001311003.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC1468 predicted acetyltransferase
YP_001311005.1	KEGG: ctc:CTC00860 D-galactose-binding periplasmic protein precursor
YP_001311006.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC2539 predicted acetyltransferase
YP_001311008.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bat:BAS2577 acetyltransferase, GNAT family
YP_001311009.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC3445 predicted acetyltransferase
YP_001311011.1	PFAM: metallophosphoesterase; KEGG: bha:BH1859 hypothetical protein
YP_001311013.1	PFAM: helix-turn-helix, HxlR type; KEGG: cac:CAC2934 predicted transcriptional regulator
YP_001311014.1	PFAM: nitroreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cac:CAC2933 ferredoxin-like domain fused to nitroreductase-like domain
YP_001311016.1	PFAM: LexA DNA-binding domain protein; KEGG: bha:BH2356 transcriptional repressor of the SOS regulon
YP_001311017.1	PFAM: protein of unknown function DUF161; KEGG: cac:CAC1325 uncharacterized conserved protein, YitT (B.subtilis) family
YP_001311018.1	PFAM: protein of unknown function DUF81; KEGG: dar:Daro_3914 protein of unknown function DUF81
YP_001311019.1	PFAM: chemotaxis sensory transducer; KEGG: cac:CAC2803 membrane associated methyl-accepting chemotaxis protein
YP_001311020.1	PFAM: CheW domain protein; KEGG: pca:Pcar_0546 CheW protein
YP_001311023.1	KEGG: cpf:CPF_1072 hypothetical protein
YP_001311024.1	KEGG: cac:CAC0070 hypothetical protein
YP_001311025.1	PFAM: helix-turn-helix domain protein; KEGG: cno:NT01CX_2201  transcriptional regulator
YP_001311026.1	PFAM: protein of unknown function DUF955; KEGG: cno:NT01CX_2202 hypothetical protein
YP_001311027.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY4790 hypothetical protein
YP_001311028.1	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; proteinase inhibitor I9, subtilisin propeptide; KEGG: bsu:BG10561 minor extracellular serine protease
YP_001311030.1	PFAM: CHAP domain containing protein; SMART: SH3 domain protein domain protein; KEGG: cpr:CPR_B0001 bacteriocin
YP_001311031.1	PFAM: Accessory gene regulator B; KEGG: cno:NT01CX_2060  AgrB-like protein
YP_001311032.1	SMART: ATP-binding region, ATPase domain protein domain protein; KEGG: cno:NT01CX_2062 accessory gene regulator protein C
YP_001311033.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sao:SAOUHSC_00231 two-component response regulator
YP_001311034.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cth:Cthe_1383 tetratricopeptide TPR_2
YP_001311035.1	PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: cpe:CPE0406 probable reticuline oxidase
YP_001311036.1	PFAM: small acid-soluble spore H family protein
YP_001311037.1	KEGG: rso:RSc2523  transmembrane protein
YP_001311038.1	PFAM: amino acid permease-associated region; KEGG: cac:CAC1472 amino acid permease
YP_001311039.1	PFAM: regulatory protein, MerR; KEGG: cac:CA_P0178 transcriptional regulator, MerR family
YP_001311040.1	PFAM: aldo/keto reductase; KEGG: bad:BAD_0873 possible reductase
YP_001311041.1	PFAM:  cell wall binding repeat-containing protein; SMART: transglutaminase domain protein; KEGG: ctc:CTC00472 transglutaminase-like predicted protease
YP_001311043.1	TIGRFAM: peptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter C-terminal domain protein; SMART: ATPase AAA; KEGG: cac:CAC3635 oligopeptide ABC transporter ATPase component
YP_001311044.1	TIGRFAM: peptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter C-terminal domain protein; SMART: ATPase AAA; KEGG: cac:CAC0179 oligopeptide transport ATP-binding protein
YP_001311045.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sth:STH1036 oligopeptide ABC transporter permease
YP_001311046.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2554 oligopeptide/dipeptide ABC transporter permease
YP_001311047.1	PFAM: extracellular solute-binding protein, family 5; KEGG: cpr:CPR_2258 bacterial extracellular solute-binding proteins, family 5 superfamily
YP_001311048.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: cac:CA_P0174 membrane protein
YP_001311049.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cth:Cthe_0511 histidine kinase
YP_001311050.1	PFAM: glycoside hydrolase, family 1; KEGG: yen:YE1417 6-phospho-beta-glucosidase
YP_001311051.1	KEGG: tte:TTE2242 transposase
YP_001311052.1	PFAM:  cell wall binding repeat-containing protein; SCP-like extracellular; KEGG: sth:STH564 hypothetical protein
YP_001311053.1	KEGG: cth:Cthe_1780 hypothetical protein
YP_001311054.1	PFAM: Abortive infection protein; KEGG: sdn:Sden_0892 abortive infection protein
YP_001311055.1	PFAM: Beta-ketoacyl synthase-like; KEGG: cth:Cthe_0932 beta-ketoacyl synthase
YP_001311056.1	PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; KEGG: bha:BH3506 transcriptional regulator (AraC/XylS family)
YP_001311057.1	KEGG: fra:Francci3_2694 hypothetical protein
YP_001311058.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cac:CAC1422 uncharacterized hypothetical protein, YUGS B.subtilis ortholog
YP_001311059.1	KEGG: cpr:CPR_1341 D-galactose-binding periplasmic protein precursor
YP_001311060.1	KEGG: cpf:CPF_0972 hypothetical protein
YP_001311062.1	TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: cpf:CPF_0578 signal peptidase I
YP_001311063.1	PFAM: alpha/beta hydrolase fold; KEGG: cac:CAC2688 alpha/beta superfamily hydrolase (possible chloroperoxidase)
YP_001311064.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: llm:llmg_1124 conserved hypothetical protein
YP_001311065.1	PFAM: protein of unknown function DUF218; KEGG: cpf:CPF_1006 hypothetical protein
YP_001311066.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: cpr:CPR_2341 iron hydrogenase
YP_001311067.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: dsy:DSY0576 hypothetical protein
YP_001311068.1	PFAM: peptidase S14, ClpP; KEGG: cac:CAC2640 protease subunits of ATP-dependent protease, ClpP
YP_001311069.1	PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cpr:CPR_2121 exonuclease family protein
YP_001311070.1	PFAM: response regulator receiver; KEGG: ctc:CTC01523 transcriptional regulatory protein
YP_001311071.1	PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold domain protein; KEGG: ctc:CTC01524 sensor kinase DpiB
YP_001311072.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_001311073.1	transports degraded pectin products into the bacterial cell
YP_001311074.1	PFAM: UBA/THIF-type NAD/FAD binding protein; malic protein domain protein; malic protein, NAD-binding; KEGG: cpr:CPR_0140 NAD-dependent malic enzyme
YP_001311075.1	KEGG: bcl:ABC0828 hypothetical protein
YP_001311076.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: cac:CAC1467 transcriptional regulator, Lrp family
YP_001311077.1	KEGG: cac:CAC1466 hypothetical protein
YP_001311078.1	PFAM: chemotaxis sensory transducer; Heme NO binding domain protein; KEGG: cno:NT01CX_1000 methyl-accepting chemotaxis protein
YP_001311079.1	PFAM: GntR family transcriptional regulator; aminotransferase, class I and II; KEGG: cpf:CPF_0356 transcriptional regulator, GntR family/aminotransferase
YP_001311080.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ayw:AYWB_324 NADH oxidase H2O2-forming
YP_001311081.1	PFAM: response regulator receiver; KEGG: cth:Cthe_0805 response regulator receiver protein
YP_001311082.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cth:Cthe_0806 PAS/PAC sensor hybrid histidine kinase
YP_001311083.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppd:Ppro_1601 methyl-accepting chemotaxis sensory transducer
YP_001311084.1	PFAM: CheW domain protein; KEGG: cth:Cthe_0809 CheW protein
YP_001311085.1	PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cth:Cthe_0810 chemotaxis protein CheAs
YP_001311086.1	PFAM: response regulator receiver; KEGG: cth:Cthe_0811 response regulator receiver protein
YP_001311087.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: cac:CAC2244 HAD superfamily hydrolases, YkrA B.subtilis ortholog
YP_001311088.1	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: cth:Cthe_1256 glycoside hydrolase, family 3-like protein
YP_001311089.1	PFAM: cell wall hydrolase/autolysin; KEGG: pcu:pc0315  N-acetylmuramoyl-L-alanine amidase
YP_001311090.1	PFAM: protein of unknown function DUF6, transmembrane; UAA transporter; KEGG: cac:CAC1538 predicted permease, YCXC B.subtilis ortholog
YP_001311091.1	KEGG: cno:NT01CX_0633 hypothetical protein
YP_001311092.1	KEGG: cac:CAC2427 hypothetical protein
YP_001311093.1	TIGRFAM:  CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cno:NT01CX_0631 activator of 2-hydroxyglutaryl-CoA dehydratase
YP_001311094.1	PFAM: amino acid permease-associated region; KEGG: lsa:LSA0125  amino acid/polyamine transport protein
YP_001311095.1	PFAM: glycosyl transferase, family 39; KEGG: gka:GK1918 hypothetical protein
YP_001311097.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cac:CAC2422 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase
YP_001311098.1	PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: cac:CAC0814 3-oxoacyl-[acyl-carrier-protein] synthase III
YP_001311100.1	PFAM: protein of unknown function DUF939; KEGG: cac:CAC2484 predicted membrane, YQJA B.subtilis ortholog
YP_001311101.1	PFAM: GntR family transcriptional regulator; aminotransferase, class I and II; KEGG: bce:BC2526 transcriptional regulator, GntR family
YP_001311102.1	PFAM: glycoside hydrolase, family 4; KEGG: bce:BC5209 6-phospho-beta-glucosidase
YP_001311103.1	PFAM: YdjC family protein; KEGG: bcl:ABC2079 possible cellobiose phosphotransferase system protein
YP_001311104.1	KEGG: cac:CAC3434 hypothetical protein
YP_001311105.1	KEGG: cac:CAC3435 hypothetical protein
YP_001311106.1	PFAM: peptidase M29, aminopeptidase II; KEGG: cpr:CPR_1965 aminopeptidase
YP_001311107.1	catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin
YP_001311108.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cac:CAC2459 2-oxoacid ferredoxin oxidoreductase, alpha subunit
YP_001311109.1	PFAM: microcompartments protein; KEGG: dde:Dde_3265  propanediol utilization protein PduT
YP_001311110.1	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: dsy:DSY0411 hypothetical protein
YP_001311111.1	PFAM: aldehyde dehydrogenase; KEGG: rru:Rru_A0914 aldehyde dehydrogenase
YP_001311112.1	TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: rru:Rru_A0910 ethanolamine utilization protein EutJ
YP_001311113.1	PFAM: Propanediol utilization protein; KEGG: dsy:DSY2876 hypothetical protein
YP_001311114.1	PFAM: microcompartments protein; KEGG: stm:STM2038 Propanediol utilization: polyhedral bodies
YP_001311115.1	KEGG: rru:Rru_A0923 hypothetical protein
YP_001311116.1	PFAM: S-adenosylmethionine synthetase; KEGG: rru:Rru_A0917 methionine adenosyltransferase
YP_001311117.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: rru:Rru_A0919 two component transcriptional regulator, AraC family
YP_001311118.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: cpe:CPE0927 two-component sensor histidine kinase
YP_001311119.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: lmf:LMOf2365_1174 propanol dehydrogenase
YP_001311120.1	PFAM: aldehyde dehydrogenase; KEGG: lmf:LMOf2365_1173 CoA-dependent propionaldehyde dehydrogenase
YP_001311121.1	PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: lin:lin1127 hypothetical protein
YP_001311122.1	PFAM: microcompartments protein; KEGG: lwe:lwe1116 propanediol utilization protein PduK
YP_001311124.1	PFAM: microcompartments protein; KEGG: cno:NT01CX_0494 microcompartment protein
YP_001311125.1	PFAM: microcompartments protein; KEGG: lwe:lwe1110 propanediol utilization protein PduB
YP_001311126.1	TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: rru:Rru_A0916 pyruvate-formate lyase-activating enzyme
YP_001311127.1	TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: rru:Rru_A0903 pyruvate formate-lyase
YP_001311128.1	TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: rru:Rru_A0902 peptidase C56, PfpI
YP_001311129.1	TIGRFAM: ethanolamine utilization protein, EutP; KEGG: ssa:SSA_0509 propanediol utilization protein
YP_001311130.1	PFAM: microcompartments protein; KEGG: ctc:CTC02181 ethanolamine utilization protein eutS
YP_001311131.1	PFAM: protein of unknown function DUF336; KEGG: cpr:CPR_1010 hypothetical protein
YP_001311132.1	KEGG: bfs:BF3595 hypothetical protein
YP_001311133.1	PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: cac:CAC2772 permease
YP_001311134.1	PFAM: protein of unknown function DUF124; KEGG: cac:CAC0556 uncharacterized conserved protein
YP_001311135.1	PFAM: iron dependent repressor; KEGG: cac:CAC2616 predicted iron-dependent transcription repressor
YP_001311136.1	TIGRFAM: Mn2+/Fe2+ transporter NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: cac:CA_P0063 NRAMP manganese transport protein MntA
YP_001311137.1	KEGG: cac:CAC0325 uncharacterized membrane protein, homolog of YtaF B.subtilis
YP_001311138.1	TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: bar:GBAA5125 L-lactate dehydrogenase
YP_001311139.1	PFAM: LuxR family transcriptional regulator; KEGG: cac:CAC0445 protein, containing LuxR family transcriptional regulator HTH domain
YP_001311141.1	KEGG: dsy:DSY0352 hypothetical protein
YP_001311142.1	TIGRFAM: ribokinase; PFAM: PfkB domain protein; KEGG: ana:all1784 ribokinase
YP_001311143.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC1352 membrane associated chemotaxis sensory transducer protein (MSP domain and HAMP domain)
YP_001311144.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sus:Acid_6178 periplasmic binding protein/LacI transcriptional regulator
YP_001311145.1	KEGG: cno:NT01CX_0007 hypothetical protein
YP_001311146.1	PFAM: histidine triad (HIT) protein; KEGG: bth:BT_4586 hypothetical protein
YP_001311147.1	KEGG: eca:ECA3560 oligogalacturonide transporter
YP_001311148.1	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism
YP_001311149.1	PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: mta:Moth_0429 mannitol dehydrogenase
YP_001311150.1	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate
YP_001311151.1	PFAM: GntR family transcriptional regulator; GntR domain protein; KEGG: bld:BLi01354 hypothetical protein
YP_001311152.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC3397 membrane associated methyl-accepting chemotaxis protein (with HamP domain)
YP_001311153.1	KEGG: bmb:BruAb2_0422 ABC transporter periplasmic protein
YP_001311154.1	KEGG: cac:CA_P0027 predicted amino acid permeases
YP_001311155.1	KEGG: cpr:CPR_2278 hypothetical protein
YP_001311156.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY4363 hypothetical protein
YP_001311158.1	PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: cac:CAC1626 glycerol dehydrogenase
YP_001311160.1	PFAM: PspC domain protein; KEGG: bat:BAS4399 hypothetical protein
YP_001311161.1	PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: cno:NT01CX_1480 dihydroxyacid dehydratase
YP_001311162.1	PFAM: GntR family transcriptional regulator; GntR domain protein; KEGG: sph:MGAS10270_Spy1173 transcriptional regulator, GntR family
YP_001311163.1	PFAM: amino acid permease-associated region; KEGG: cno:NT01CX_1994 amino acid permease
YP_001311164.1	PFAM: regulatory protein, MarR; KEGG: cya:CYA_1758 transcriptional regulator, MarR family
YP_001311165.1	TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: chy:CHY_1864 drug resistance transporter EmrB/QacA family
YP_001311166.1	KEGG: mta:Moth_2323 secretion protein HlyD
YP_001311167.1	PFAM: secretion protein HlyD family protein; KEGG: mta:Moth_2322 secretion protein HlyD
YP_001311168.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cac:CAC2434 membrane associatehistidine kinase with HAMP domain
YP_001311169.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC2435 response regulator (CheY-like domain and HTH-type DNA-binding domain)
YP_001311170.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: cac:CAC0747 secreted protein containing uncharacterized conserved protein of ErfK family
YP_001311171.1	PFAM: amine oxidase; KEGG: ter:Tery_1366 amine oxidase
YP_001311172.1	KEGG: cac:CAC0747 secreted protein containing uncharacterized conserved protein of ErfK family
YP_001311173.1	PFAM: iron dependent repressor; KEGG: cth:Cthe_1402 iron (metal) dependent repressor, DtxR family
YP_001311174.1	PFAM: helix-turn-helix, HxlR type; KEGG: cac:CAC2568 predicted transcriptional regulator
YP_001311175.1	PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: cac:CAC2569 NimC/NimA family protein
YP_001311176.1	TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: cth:Cthe_0430 hydrogenase, Fe-only
YP_001311177.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: cth:Cthe_0429 NADH dehydrogenase (quinone)
YP_001311178.1	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: cth:Cthe_0428 NADH dehydrogenase (ubiquinone), 24 kDa subunit
YP_001311179.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_001311180.1	PFAM: GTP-binding protein, HSR1-related; KEGG: tte:TTE1899 predicted GTPase (dynamin-related)
YP_001311181.1	KEGG: tte:TTE1899 predicted GTPase (dynamin-related)
YP_001311182.1	KEGG: ehi:3.t00030 hypothetical protein Pfam: Snf7 Apolipoprotein DUF19 Myosin_tail_1 Filament PFEMP FH2 DHC_N1 EzrA Laminin_I DUF1664 TLD PROSITE: ASP_RICH GLU_RICH LYS_RICH
YP_001311183.1	KEGG: tte:TTE1899 predicted GTPase (dynamin-related)
YP_001311184.1	PFAM: aminotransferase, class IV; KEGG: cpr:CPR_1095 branched-chain amino acid aminotransferase
YP_001311185.1	TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: cpr:CPR_1094 para-aminobenzoate synthase, component I
YP_001311186.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: cpr:CPR_1093 para-aminobenzoate synthase glutamine amidotransferase, component II
YP_001311187.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cpr:CPR_1123 cyclopropane-fatty-acyl-phospholipid synthase
YP_001311188.1	KEGG: cno:NT01CX_0690 hypothetical protein
YP_001311189.1	PFAM: heat shock protein Hsp20; KEGG: ctc:CTC02469 heat shock protein, molecular chaperone
YP_001311190.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cth:Cthe_1498 methyl-accepting chemotaxis sensory transducer
YP_001311191.1	TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BG12262 beta xyloside H+-symporter
YP_001311192.1	PFAM: glycoside hydrolase, family 43; KEGG: cac:CAC3452 beta-xylosidase, family 43 glycosyl hydrolase
YP_001311193.1	PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: rpc:RPC_4380 dihydroxy-acid dehydratase
YP_001311194.1	PFAM: dihydrodipicolinate synthetase; KEGG: chy:CHY_1320 dihydrodipicolinate synthase
YP_001311195.1	PFAM: IclR family transcriptional regulator; Transcriptional regulator IclR-like; KEGG: bld:BLi04073 hypothetical protein
YP_001311196.1	PFAM: regulatory protein, MerR; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ctc:CTC01641  transcriptional regulatory protein
YP_001311197.1	KEGG: ddi:DDBDRAFT_0185950 hypothetical protein
YP_001311198.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: ctc:CTC01639 spore coat polysaccharide biosynthesis protein SpsC
YP_001311199.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: tte:TTE1253 predicted hydrolase of the metallo-beta-lactamase superfamily
YP_001311200.1	KEGG: bat:BAS0215 hypothetical protein
YP_001311201.1	TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: cpe:CPE1552 pullulanase
YP_001311202.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: cac:CAC2686 possible maltodextrin glucosidase
YP_001311204.1	PFAM: alpha/beta hydrolase fold; KEGG: cac:CAC2246 lysophospholipase L2 PLDB, hydrolase of alpha/beta superfamily
YP_001311205.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cac:CAC2620 HD-GYP hydrolase domain containing protein
YP_001311206.1	KEGG: cno:NT01CX_2018 hypothetical protein
YP_001311207.1	PFAM: arsenate reductase and related; KEGG: cac:CAC0417 similar to arsenate reductase
YP_001311208.1	catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate
YP_001311209.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_001311210.1	PFAM: inner-membrane translocator; KEGG: cth:Cthe_1581 inner-membrane translocator
YP_001311211.1	PFAM: inner-membrane translocator; KEGG: cth:Cthe_1580 inner-membrane translocator
YP_001311212.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cth:Cthe_1579 ABC transporter protein
YP_001311213.1	PFAM: basic membrane lipoprotein; KEGG: gka:GK1283 ABC transporter (lipoprotein)
YP_001311214.1	PFAM: LacI family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; KEGG: cno:NT01CX_1495 transcriptional regulator
YP_001311215.1	PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: cpr:CPR_0701 aspartate aminotransferase
YP_001311216.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: cpr:CPR_0700 transcriptional regulator, AsnC family
YP_001311217.1	KEGG: cno:NT01CX_0353 hypothetical protein
YP_001311218.1	PFAM: ATPase AAA, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: ATPase AAA; KEGG: cth:Cthe_1217 ATP-dependent Clp protease, ATP-binding subunit ClpA
YP_001311219.1	PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: cth:Cthe_1216 ATP-dependent Clp protease adaptor protein ClpS
YP_001311220.1	PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: cno:NT01CX_0762 arginine/lysine/ornithine decarboxylases
YP_001311221.1	PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dsy:DSY4242 hypothetical protein
YP_001311222.1	PFAM: peptidase M16 domain protein; KEGG: ctc:CTC01755 zinc protease
YP_001311223.1	PFAM: Radical SAM domain protein; KEGG: cac:CAC2279 heme biosynthesis (nirJ-2) family protein
YP_001311224.1	PFAM: phosphotransferase system PTS, EIIB protein; KEGG: eca:ECA4388 PTS system, IIABC component
YP_001311225.1	PFAM: LuxR family transcriptional regulator; KEGG: swo:Swol_1080 ATP-dependent transcriptional regulator-like protein
YP_001311226.1	molecular chaperone
YP_001311227.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01211 methyl-accepting chemotaxis protein TlpA
YP_001311228.1	PFAM: regulatory protein, MerR; TipAS antibiotic-recognition domain protein; KEGG: dsy:DSY4240 hypothetical protein
YP_001311229.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dsy:DSY1176 hypothetical protein
YP_001311230.1	KEGG: cac:CAC3264 uncharacterized conserved protein, YTFJ B.subtilis ortholog
YP_001311231.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; metal-dependent phosphohydrolase, HD region; KEGG: cpf:CPF_1164  sensory box-containing diguanylate cyclase
YP_001311232.1	PFAM: protein of unknown function DUF214; KEGG: cpe:CPE0851 probable ABC transporter
YP_001311233.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpf:CPF_0841 ABC transporter ATP-binding protein
YP_001311234.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cpf:CPF_0837 sensor histidine kinase
YP_001311235.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_0836 DNA-binding response regulator
YP_001311236.1	TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY4275 hypothetical protein
YP_001311237.1	TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY4276 hypothetical protein
YP_001311238.1	PFAM: extracellular solute-binding protein, family 3; KEGG: dsy:DSY4277 hypothetical protein
YP_001311239.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: dsy:DSY4278 hypothetical protein
YP_001311240.1	PFAM: response regulator receiver; YcbB domain; KEGG: tte:TTE1203 CheY-like receiver domains
YP_001311241.1	PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: tte:TTE1202 Sensory transduction histidine kinases
YP_001311242.1	PFAM: branched-chain amino acid transport; KEGG: bca:BCE_4093 hypothetical protein
YP_001311243.1	PFAM: AzlC family protein; KEGG: bca:BCE_4092 AzlC family protein
YP_001311244.1	PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: ctc:CTC01439  transcriptional regulatory protein
YP_001311245.1	PFAM: Auxin Efflux Carrier; KEGG: smu:SMU.909  permease
YP_001311246.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: cth:Cthe_2281 response regulator receiver modulated CheB methylesterase
YP_001311247.1	PFAM: MCP methyltransferase, CheR-type; KEGG: cth:Cthe_2282 MCP methyltransferase, CheR-type
YP_001311248.1	PFAM: chemotaxis sensory transducer; KEGG: cth:Cthe_2819 methyl-accepting chemotaxis sensory transducer
YP_001311249.1	PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cth:Cthe_2284 chemotaxis protein CheAs
YP_001311250.1	PFAM: CheW domain protein; KEGG: cth:Cthe_2285 CheW protein
YP_001311251.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cac:CAC3650 HD-GYP domain containing protein
YP_001311252.1	TIGRFAM: small GTP-binding protein; sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; KEGG: ftn:FTN_0927 sulfate adenylate transferase, subunit 1
YP_001311253.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_001311254.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cac:CAC0105 ferredoxin
YP_001311255.1	catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite
YP_001311256.1	TIGRFAM: sulfate ABC transporter ATPase subunit; PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: syn:slr1455 ABC-type sulfate transport system ATP-binding protein
YP_001311257.1	TIGRFAM: sulfate ABC transporter inner membrane subunit; sulfate ABC transporter inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A0504 sulfate ABC transporter permease CysW
YP_001311258.1	TIGRFAM: sulfate ABC transporter inner membrane subunit; sulfate ABC transporter inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bce:BC1092 sulfate transport system permease cysT
YP_001311259.1	TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: bca:BCE_1196 sulfate ABC transporter sulfate/thiosulfate-binding protein
YP_001311260.1	TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: bca:BCE_1196 sulfate ABC transporter sulfate/thiosulfate-binding protein
YP_001311262.1	TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: cth:Cthe_0618 ferrous iron transport protein B
YP_001311263.1	PFAM: FeoA family protein; KEGG: cth:Cthe_0619 FeoA
YP_001311264.1	PFAM: FeoA family protein; KEGG: mac:MA3478 hypothetical protein
YP_001311265.1	Converts isocitrate to alpha ketoglutarate
YP_001311266.1	TIGRFAM: phage replisome organizer, KEGG: sac:SACOL0341 hypothetical protein
YP_001311268.1	PFAM: Abortive infection protein; KEGG: tte:TTE0417 predicted metal-dependent membrane protease
YP_001311269.1	TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: syn:sll1027 NADH-dependent glutamate synthase small subunit
YP_001311270.1	PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bha:BH1728 glutamate synthase (large subunit)
YP_001311271.1	PFAM: ANTAR domain protein; KEGG: mta:Moth_1295 response regulator receiver (CheY-like) and ANTAR domain protein
YP_001311272.1	TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; KEGG: chy:CHY_0704 glutamine synthetase
YP_001311273.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive
YP_001311274.1	PFAM: SNARE associated Golgi protein; KEGG: cpf:CPF_1159 DedA protein
YP_001311275.1	PFAM: von Willebrand factor, type A; KEGG: cpr:CPR_2263 von Willebrand factor type A domain protein
YP_001311276.1	KEGG: cpr:CPR_2264 prepilin peptidase-dependent
YP_001311277.1	KEGG: cpr:CPR_2265 hypothetical protein
YP_001311279.1	KEGG: cpe:CPE2281 type IV pilus assembly protein PilO
YP_001311280.1	PFAM: Fimbrial assembly family protein; KEGG: cno:NT01CX_1597 fimbrial assembly protein (PilN) superfamily
YP_001311281.1	TIGRFAM: type IV pilus assembly protein PilM; KEGG: cpe:CPE2283 probable fimbrial assembly protein
YP_001311282.1	KEGG: cpf:CPF_2567  type IV pilin
YP_001311283.1	PFAM: type II secretion system protein; KEGG: cpe:CPE2285 probable pilin biogenesis protein
YP_001311284.1	PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: ATPase AAA; KEGG: cpf:CPF_2570 secretion system protein E
YP_001311285.1	PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: cpf:CPF_2571 type IV leader peptidase family protein
YP_001311287.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_0126 pneumococcal surface protein A
YP_001311288.1	PFAM: protein of unknown function DUF28; KEGG: cpr:CPR_1922 conserved hypothetical protein TIGR01033
YP_001311289.1	PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: cpe:CPE1955 hypothetical protein
YP_001311290.1	PFAM: GntR family transcriptional regulator; aminotransferase, class I and II; KEGG: cpr:CPR_1924 transcriptional regulator, GntR family/aminotransferase
YP_001311291.1	PFAM: DNA polymerase, beta domain protein region; KEGG: cno:NT01CX_1815 hypothetical protein
YP_001311292.1	KEGG: cpf:CPF_2214 hypothetical protein
YP_001311293.1	PFAM: GTP-binding protein, HSR1-related; KEGG: cpr:CPR_1927 GTP binding protein
YP_001311294.1	TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: cpf:CPF_2216 hypoxanthine phosphoribosyltransferase
YP_001311295.1	TIGRFAM: Sporulation protein YunB; KEGG: cpr:CPR_1929 sporulation protein YunB
YP_001311296.1	TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: cpf:CPF_2218 penicillin-binding protein, 1A family
YP_001311298.1	PFAM: nucleoside diphosphate kinase; KEGG: cno:NT01CX_0238 nucleoside diphosphate kinase (NDK) (NDP kinase)(nucleoside-2-P kinase)
YP_001311299.1	PFAM: acylphosphatase; KEGG: bld:BLi00788 similar to proteins; RBL05910
YP_001311300.1	PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cno:NT01CX_1282 PHP family protein
YP_001311301.1	KEGG: ctc:CTC00839 cellulose synthase subunit domain
YP_001311302.1	PFAM: glycosyl transferase, family 2; KEGG: ctc:CTC00838 N-acetylglucosaminyltransferase
YP_001311303.1	KEGG: lmf:LMOf2365_0557 hypothetical protein
YP_001311304.1	PFAM: GGDEF domain containing protein; KEGG: lmf:LMOf2365_0560 hypothetical protein
YP_001311305.1	KEGG: lin:lin0531 transmembrane protein
YP_001311306.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: cac:CAC0522 predicted hydrolase of the HAD superfamily
YP_001311307.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_001311308.1	KEGG: cpf:CPF_2310 hypothetical protein
YP_001311309.1	TIGRFAM: ATPase P; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: cpr:CPR_2026 cation-transporting ATPase pacl
YP_001311310.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpr:CPR_0150 hypothetical protein
YP_001311311.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_001311312.1	makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene
YP_001311313.1	makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene
YP_001311314.1	KEGG: cno:NT01CX_1924 hypothetical protein
YP_001311315.1	TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: cac:CAC2143 sigma factor of SigD/WhiG family
YP_001311316.1	PFAM: type IV pilus assembly PilZ; KEGG: cac:CAC2144 uncharacterized protein, YPFA B.subtilis ortholog
YP_001311317.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: cno:NT01CX_1921 ATPases involved in chromosome partitioning, MinD family
YP_001311318.1	positive regulator of class III flagellar genes
YP_001311319.1	membrane protein involved in the flagellar export apparatus
YP_001311320.1	FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined
YP_001311321.1	PFAM: export protein FliQ, family 3; KEGG: cac:CAC2149 flagellar biosynthesis protein FliQ
YP_001311322.1	TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: cno:NT01CX_1916 flagellar biosynthetic protein FliP
YP_001311323.1	KEGG: ctc:CTC01663  flagellar formation protein
YP_001311324.1	PFAM: flagellar basal body-associated protein FliL; KEGG: cac:CAC2152 flagellar protein FliL
YP_001311325.1	PFAM: flagellar FlbD family protein; KEGG: cno:NT01CX_1911 flagellar protein FlbD -related protein
YP_001311326.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ctc:CTC01667 flagellar hook protein flgE
YP_001311327.1	TIGRFAM: flagellar operon protein; KEGG: cno:NT01CX_1909 hypothetical protein
YP_001311328.1	PFAM: flagellar hook capping protein; KEGG: cno:NT01CX_1908 flagellar hook assembly protein FlgD
YP_001311329.1	PFAM: flagellar hook-length control protein; KEGG: cac:CAC2157 flagellar hook-length control protein fliK
YP_001311330.1	TIGRFAM: flagellar export protein FliJ; KEGG: cno:NT01CX_1906 flagellar protein FliJ
YP_001311331.1	TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein; SMART: ATPase AAA; KEGG: cno:NT01CX_1905 flagellum-specific ATP synthase
YP_001311332.1	KEGG: cac:CAC2160 flagellar assembly protein FliH
YP_001311333.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001311334.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_001311335.1	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: cno:NT01CX_1901 flagellar hook-basal body complex protein (FliE)
YP_001311336.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_001311337.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod
YP_001311338.1	PFAM: OmpA/MotB domain protein; KEGG: cac:CAC0305 chemotaxis motility protein B, gene motB
YP_001311339.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: cac:CAC0304 chemotaxis motility protein A, gene motA
YP_001311340.1	PFAM: flagellin domain protein; KEGG: ctc:CTC01679 flagellin
YP_001311342.1	PFAM: protein of unknown function DUF115; KEGG: cno:NT01CX_1884 hypothetical protein
YP_001311343.1	KEGG: cac:CAC2186 glycosyltransferase
YP_001311344.1	PFAM: N-acetylneuraminic acid synthase, N-terminal domain; SAF domain; KEGG: cac:CAC2187 sialic acid synthase
YP_001311345.1	PFAM: MaoC domain protein dehydratase; KEGG: ctc:CTC00706 (de)hydratase mit MaoC domain
YP_001311346.1	PFAM: GCN5-related N-acetyltransferase; KEGG: gfo:orf2002 GNAT family acetyltransferase-possibly polyamine acetyltransferase
YP_001311347.1	PFAM: acylneuraminate cytidylyltransferase; KEGG: cno:NT01CX_1888 spore coat polysaccharide biosynthesis protein SpsF
YP_001311348.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ctc:CTC01712 UDP-4-dehydro-6-deoxy-2-acetamido-D-glucose 4-reductase
YP_001311349.1	KEGG: cno:NT01CX_1885 hypothetical protein
YP_001311350.1	PFAM: protein of unknown function DUF115; KEGG: cno:NT01CX_1883 hypothetical protein
YP_001311351.1	KEGG: lca:LSEI_1352 predicted transposase
YP_001311352.1	KEGG: mbu:Mbur_0365  transposase
YP_001311353.1	PFAM: Integrase, catalytic region; KEGG: llm:llmg_1075 transposase for insertion sequence element IS712E
YP_001311354.1	PFAM: IstB domain protein ATP-binding protein; SMART: ATPase AAA; KEGG: mac:MA4529 IstB helper protein
YP_001311355.1	PFAM: flagellin domain protein; KEGG: cno:NT01CX_1882 flagellin protein FliB(A)
YP_001311356.1	KEGG: cac:CAC2204 hypothetical protein
YP_001311357.1	PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: bsu:BG10921 flagellar hook-associated protein 2 (HAP2)
YP_001311358.1	PFAM: flagellar protein FliS; KEGG: ctc:CTC01719 flagellar protein fliS
YP_001311359.1	KEGG: cno:NT01CX_1877 hypothetical protein
YP_001311360.1	PFAM: flagellar protein FlaG protein; KEGG: cac:CAC2208 flagellin family protein, YvyC B.subtilis ortholog
YP_001311361.1	PFAM: carbon storage regulator; KEGG: cno:NT01CX_1875 carbon storage regulator
YP_001311362.1	binds to flagellin and appears to stabilize flagellin during flagella assembly
YP_001311363.1	TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: cno:NT01CX_1873 flagellar hook-associated protein 3
YP_001311364.1	TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ctc:CTC01724 flagellar hook-associated protein 1
YP_001311365.1	PFAM: FlgN family protein; KEGG: ctc:CTC01725 hypothetical protein
YP_001311366.1	PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: cac:CAC2214 regulator of flagellin synthesis, FLGM
YP_001311367.1	TIGRFAM: phage replisome organizer, KEGG: lmo:lmo2317 similar to protein gp49
YP_001311368.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001311369.1	PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: cno:NT01CX_1868 flagellar motor switch protein FliM
YP_001311370.1	PFAM: CheW domain protein; KEGG: cno:NT01CX_1867 chemotaxis signal transduction protein CheW
YP_001311371.1	PFAM: response regulator receiver; KEGG: ctc:CTC01729 chemotaxis protein cheY
YP_001311372.1	PFAM: CheC domain protein; KEGG: cac:CAC2219 chemotaxis protein CheC
YP_001311373.1	PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cno:NT01CX_1864 chemotaxis protein CheA
YP_001311374.1	PFAM: MCP methyltransferase, CheR-type; KEGG: cno:NT01CX_1863 chemotaxis protein methyltransferase CheR
YP_001311375.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: cno:NT01CX_1862 protein-glutamate methylesterase CheB
YP_001311376.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_001311377.1	PFAM: CheW domain protein; KEGG: cno:NT01CX_1860 chemotaxis protein CheW
YP_001311378.1	PFAM: protein of unknown function DUF342; KEGG: cno:NT01CX_1859 hypothetical protein
YP_001311379.1	PFAM: aminotransferase, class IV; KEGG: cac:CAC2226 enzyme of IlvE/PabC family (branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase)
YP_001311380.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: cpf:CPF_2313 HAD-superfamily subfamily IB hydrolase, TIGR01490
YP_001311381.1	PFAM: transposase, IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family
YP_001311382.1	PFAM: aminotransferase, class I and II; KEGG: ctc:CTC01294 aspartate aminotransferase
YP_001311383.1	KEGG: cno:NT01CX_1855 hypothetical protein
YP_001311384.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cpf:CPF_2318 pyruvate-flavodoxin oxidoreductase
YP_001311385.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_001311386.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_001311387.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: cac:CAC2232 SsDNA exonuclease, RecJ
YP_001311388.1	TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: cpe:CPE2067 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein
YP_001311389.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001311390.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001311391.1	PFAM: glycosyl transferase, family 2; KEGG: cpr:CPR_2042 glycosyl transferase, group 2 family protein
YP_001311392.1	PFAM: Rhomboid family protein; KEGG: ctc:CTC00530 conserved membrane protein (rhomboid family)
YP_001311393.1	TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; Oligopeptidase F; KEGG: cno:NT01CX_1564 oligoendopeptidase F
YP_001311394.1	KEGG: cpf:CPF_1707 hypothetical protein
YP_001311395.1	KEGG: cpf:CPF_1708 hypothetical protein
YP_001311396.1	TIGRFAM: D-alanyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: dsy:DSY0223 hypothetical protein
YP_001311397.1	PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: dsy:DSY0222 hypothetical protein
YP_001311398.1	TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; KEGG: dsy:DSY0221 hypothetical protein
YP_001311399.1	PFAM: DltD, C-terminal domain protein; DltD, central domain protein; KEGG: dsy:DSY0224 hypothetical protein
YP_001311400.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ctc:CTC02361 high-affinity Zinc uptake system ATP-binding protein znuC
YP_001311401.1	PFAM: ABC transporter; KEGG: cpr:CPR_1443 metal (zinc) transport protein (ABC transporter permease) ZurM
YP_001311402.1	PFAM: aminotransferase, class V; KEGG: tde:TDE1415 nucleotidyl transferase/aminotransferase, class V
YP_001311403.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: tde:TDE1414 phosphonopyruvate decarboxylase
YP_001311404.1	TIGRFAM: cytidyltransferase-related domain; PFAM: cytidylyltransferase; KEGG: bfr:BF2578  phosphoenolpyruvate phosphomutase
YP_001311405.1	PFAM: Nucleotidyl transferase; KEGG: ctc:CTC01704  nucleotidyl transferase
YP_001311407.1	KEGG: cno:NT01CX_2433 hypothetical protein
YP_001311408.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: btk:BT9727_3965 ABC transporter ATP-binding protein
YP_001311409.1	PFAM: GntR family transcriptional regulator; KEGG: cno:NT01CX_2435 transcriptional regulator, GntR family
YP_001311410.1	PFAM: sodium:dicarboxylate symporter; KEGG: cjj:CJJ81176_0052 sodium/dicarboxylate symporter
YP_001311411.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: gvi:gll3978 unknown protein
YP_001311412.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: gvi:gll3979 unknown protein
YP_001311413.1	TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: cac:CAC1427 4-aminobutyrate aminotransferase (PLP-dependent)
YP_001311414.1	PFAM: purine catabolism PurC domain protein; KEGG: cac:CAC1426 possible transcriptional regulator from leucine-rich protein (LRPR) family
YP_001311415.1	TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB1005 glutamine ABC transporter permease
YP_001311416.1	PFAM: extracellular solute-binding protein, family 3; KEGG: bja:blr2224 ABC transporter amino acid-binding protein
YP_001311417.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mma:MM1941 glutamine transporter ATP-binding protein
YP_001311418.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: spo:SPCC965.09 hypothetical protein
YP_001311419.1	PFAM: amino acid permease-associated region; KEGG: cac:CAC0852 amino acid permease
YP_001311420.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: aae:aq_1145 1,3 propanediol dehydrogenase
YP_001311421.1	KEGG: ctc:CTC02534 hypothetical protein
YP_001311422.1	TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: cth:Cthe_1840 cysteine synthase A
YP_001311423.1	PFAM: nitroreductase; KEGG: bth:BT_1148  NADH dehydrogenase/NAD(P)H nitroreductase
YP_001311424.1	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: cpr:CPR_0474 transcriptional regulator, AraC family
YP_001311425.1	PFAM: glycoside hydrolase, family 4; KEGG: bha:BH2228 melibiase (alpha-galactosidase)
YP_001311426.1	PFAM: Domain of unknown function DUF1874; KEGG: bsu:BG12113 hypothetical protein
YP_001311427.1	PFAM: Radical SAM domain protein; KEGG: ctc:CTC00900 spore photoproduct lyase
YP_001311430.1	KEGG: nfa:nfa56440 hypothetical protein
YP_001311431.1	KEGG: cac:CAC0208 predicted membrane protein; CF-20 family
YP_001311432.1	KEGG: cac:CAC0753 polyA polymerase related protein (HD hydrolase) and P-loop ATP-ase domain
YP_001311433.1	KEGG: cac:CAC0752 homolog of eukaryotic DNA ligase III
YP_001311434.1	KEGG: dsy:DSY4340 hypothetical protein
YP_001311435.1	KEGG: cpe:CPE0425 hypothetical protein
YP_001311436.1	PFAM: Endonuclease V; KEGG: cac:CAC0363 deoxyinosine 3'endonuclease
YP_001311437.1	KEGG: btk:BT9727_3064 hypothetical protein
YP_001311439.1	KEGG: btk:BT9727_3065 hypothetical protein
YP_001311441.1	TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: cth:Cthe_0009 YD repeat containing protein
YP_001311444.1	PFAM: pentapeptide repeat protein; KEGG: ddi:DDBDRAFT_0216618 hypothetical protein
YP_001311448.1	PFAM: beta-lactamase domain protein; KEGG: cac:CAC0364 metal-dependent hydrolase of the metallobeta-lactamase superfamily
YP_001311450.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_0126 pneumococcal surface protein A
YP_001311451.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpf:CPF_0550 cell wall binding repeat domain protein
YP_001311454.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_1965 choline binding protein PcpA
YP_001311459.1	KEGG: bfr:BF1944 hypothetical protein
YP_001311465.1	KEGG: pfa:PF11_0486 MAEBL
YP_001311466.1	SMART: protein phosphatase 2C domain protein; KEGG: lmo:lmo1821 similar to  phosphoprotein phosphatase
YP_001311467.1	KEGG: sil:SPO1063 hypothetical protein
YP_001311469.1	PFAM: heat shock protein DnaJ domain protein; KEGG: sth:STH505 heat shock protein, DnaJ
YP_001311473.1	TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dsy:DSY3820 hypothetical protein
YP_001311474.1	PFAM: Saccharopine dehydrogenase; KEGG: bha:BH3957 hypothetical protein
YP_001311475.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_001311476.1	PFAM: aminotransferase, class V; Orn/Lys/Arg decarboxylase, major region; aromatic amino acid beta-eliminating lyase/threonine aldolase; Orn/Lys/Arg decarboxylase domain protein; KEGG: dsy:DSY0236 hypothetical protein
YP_001311477.1	S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine
YP_001311478.1	KEGG: mba:Mbar_A0067 hypothetical protein
YP_001311479.1	KEGG: cpf:CPF_1367 hypothetical protein
YP_001311480.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cac:CAC3581 HAD superfamily hydrolase
YP_001311481.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: chy:CHY_1871 HDIG domain protein
YP_001311483.1	KEGG: ddi:DDB_0232331 RNA-binding region-containing protein (RNP-1)
YP_001311484.1	catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism
YP_001311485.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cac:CAC2960 UDP-galactose 4-epimerase
YP_001311486.1	catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism
YP_001311487.1	PFAM: LacI family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; KEGG: cac:CAC2962 transcriptional regulators of the LacI family
YP_001311488.1	PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0407 radical SAM
YP_001311489.1	KEGG: cth:Cthe_0406 hypothetical protein
YP_001311490.1	PFAM: carbonic anhydrase; KEGG: cpf:CPF_0414 carbonic anhydrase
YP_001311491.1	KEGG: ctc:CTC00860 D-galactose-binding periplasmic protein precursor
YP_001311492.1	KEGG: cpe:CPE1341 probable galactoside ABC transporter
YP_001311493.1	KEGG: ctc:CTC00860 D-galactose-binding periplasmic protein precursor
YP_001311494.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_CH00492 probable sugar ABC transporter substrate-binding protein
YP_001311495.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; Cache domain protein; histidine kinase internal region; KEGG: bha:BH3447 two-component sensor histidine kinase
YP_001311496.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: tte:TTE2343 AraC-type DNA-binding domain-containing proteins
YP_001311497.1	PFAM: inner-membrane translocator; KEGG: cpf:CPF_1550 galactoside ABC transporter permease
YP_001311498.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ctc:CTC00861 galactoside transport ATP-binding protein mglA
YP_001311499.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00860 D-galactose-binding periplasmic protein precursor
YP_001311500.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC1387 membrane associated chemotaxis sensory transducer protein (MSP domain and HamP domain)
YP_001311501.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: tcx:Tcr_1297 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
YP_001311502.1	PFAM: phage integrase family protein; KEGG: lbl:LBL_1710 site-specific recombinase XerD
YP_001311503.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC1387 membrane associated chemotaxis sensory transducer protein (MSP domain and HamP domain)
YP_001311504.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain
YP_001311505.1	KEGG: cac:CAC0487 uncharacterized protein, ortholog of Thermotoga maritima (4981823)
YP_001311506.1	PFAM: glycoside hydrolase, clan GH-D; KEGG: aor:AO090011000063 predicted protein Pfam: Melibiase
YP_001311507.1	PFAM: glycoside hydrolase, clan GH-D; KEGG: cpe:CPE0374 alpha-galactosidase
YP_001311508.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpe:CPE0373 probable suger ABC transporter
YP_001311509.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpe:CPE0372 probable ABC transporter
YP_001311510.1	PFAM: extracellular solute-binding protein, family 1; KEGG: cpe:CPE0371 conserved hypothetical protein
YP_001311511.1	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: cpe:CPE0370 probable transcriptional regulator
YP_001311512.1	PFAM: DegV family protein; KEGG: cno:NT01CX_0895 DegV family protein
YP_001311513.1	PFAM: inner-membrane translocator; KEGG: gka:GK1908 L-arabinose ABC transporter (permease)
YP_001311514.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: gka:GK1909 ABC transporter (ATP-binding protein)
YP_001311515.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: gka:GK1910 ABC transporter (substrate-binding protein)
YP_001311517.1	PFAM: carbohydrate kinase, FGGY; KEGG: bth:BT_0350 xylulose kinase (xylulokinase)
YP_001311518.1	TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: cac:CAC1348 transketolase, TKT
YP_001311519.1	TIGRFAM:  transaldolase; PFAM: Transaldolase; KEGG: lwe:lwe2691 transaldolase
YP_001311520.1	catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
YP_001311521.1	PFAM: GntR family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; KEGG: bld:BLi03256  transcriptional regulator, fragment 2; RBL05774
YP_001311522.1	catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism
YP_001311523.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; Cache domain protein; histidine kinase internal region; KEGG: bha:BH3447 two-component sensor histidine kinase
YP_001311524.1	PFAM: inner-membrane translocator; KEGG: aav:Aave_2249 inner-membrane translocator
YP_001311525.1	PFAM: inner-membrane translocator; KEGG: aav:Aave_2250 inner-membrane translocator
YP_001311526.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: sde:Sde_0767  sugar uptake ABC transporter ATP-binding protein
YP_001311527.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: aav:Aave_2255 periplasmic binding protein/LacI transcriptional regulator
YP_001311528.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: gfo:orf7 sugar-binding sensor histidine kinase/response regulator hybrid
YP_001311529.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: gka:GK1911 two-component response regulator
YP_001311530.1	PFAM: Aldose 1-epimerase; KEGG: sus:Acid_1458 aldose 1-epimerase
YP_001311531.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cth:Cthe_0298 methyl-accepting chemotaxis sensory transducer
YP_001311532.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: efa:EF0947 hydrolase, haloacid dehalogenase-like family
YP_001311533.1	PFAM: GntR family transcriptional regulator; UbiC transcription regulator-associated domain protein; KEGG: lga:LGAS_0188 transcriptional regulator
YP_001311534.1	PFAM:  cell wall binding repeat-containing protein; SCP-like extracellular; KEGG: cpe:CPE0570 hypothetical protein
YP_001311535.1	PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cno:NT01CX_1661 predicted metal-dependent phosphoesterase (PHP family)
YP_001311537.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dsy:DSY0302 hypothetical protein
YP_001311538.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dsy:DSY0302 hypothetical protein
YP_001311539.1	TIGRFAM: ATPase P; calcium-translocating P-type ATPase, PMCA-type; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: cno:NT01CX_0593 calcium-translocating P-type ATPase, PMCA-type
YP_001311540.1	TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cpf:CPF_1542 ATP-dependent DNA helicase RecQ
YP_001311541.1	PFAM: helix-turn-helix, Fis-type; sugar diacid recognition domain protein; KEGG: cac:CAC2833 uncharacterized conserved protein, YaeG family
YP_001311542.1	KEGG: ppd:Ppro_3678 transposase and inactivated derivatives
YP_001311543.1	KEGG: gka:GK0167 transposase of IS653-like element
YP_001311544.1	PFAM: glycerate kinase; KEGG: cac:CAC2834 glycerate kinase
YP_001311545.1	PFAM: Gluconate transporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cac:CAC2835 gluconate permease, GntP
YP_001311546.1	PFAM: beta-lactamase domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rubredoxin-type Fe(Cys)4 protein; flavodoxin/nitric oxide synthase; KEGG: cpe:CPE1014 probable flavoprotein
YP_001311547.1	PFAM: UV-endonuclease UvdE; KEGG: cno:NT01CX_0232 UV DNA damage endonuclease (UV-endonuclease) UvdE
YP_001311548.1	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: cpf:CPF_1269 rubredoxin/flavodoxin/oxidoreductase
YP_001311549.1	KEGG: cno:NT01CX_0224 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_001311550.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: ana:alr4716 two-component sensor histidine kinase
YP_001311551.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rfr:Rfer_0125 periplasmic binding protein/LacI transcriptional regulator
YP_001311552.1	TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; KEGG: ctc:CTC01751 thiamin-phosphate pyrophosphorylase
YP_001311553.1	catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP
YP_001311554.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_001311555.1	TIGRFAM: phosphomethylpyrimidine kinase; PFAM: protein of unknown function UPF0031; Phosphomethylpyrimidine kinase type-1; KEGG: cpe:CPE1338 phosphomethylpyrimidine kinase
YP_001311556.1	TIGRFAM: thiW protein; KEGG: ctc:CTC01754 hypothetical protein
YP_001311557.1	PFAM: FMN-binding domain protein; KEGG: cac:CAC2762 polyferredoxin
YP_001311559.1	PFAM: ApbE family lipoprotein; KEGG: ctc:CTC01027 thiamine biosynthesis lipoprotein apbE precursor
YP_001311560.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cac:CAC2760 membrane-associated sensory histidine kinase with HAMP domain
YP_001311561.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC2759 response regulator (CheY receiver domain and HTH-type DNA-binding domain)
YP_001311562.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: mba:Mbar_A1381 hypothetical protein
YP_001311563.1	TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain; KEGG: cpr:CPR_2643 L-serine dehydratase, iron-sulfur-dependent, alpha subunit
YP_001311564.1	TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: amino acid-binding ACT domain protein; serine dehydratase beta chain; KEGG: cpr:CPR_2642 L-serine dehydratase, iron-sulfur-dependent, beta subunit
YP_001311565.1	PFAM:  esterase; KEGG: cac:CAC1962 predicted esterase of alpha/beta hydrolase superfamily, YbbA B.subtilis ortholog
YP_001311566.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bcz:BCZK2976 transcriptional regulator, AraC family
YP_001311567.1	PFAM: transport system permease; KEGG: ctc:CTC00961 iron(III) dicitrate transport system permease fecD
YP_001311568.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpf:CPF_1424 iron(III) ABC transporter ATP-binding protein
YP_001311569.1	PFAM: periplasmic binding protein; KEGG: ssa:SSA_1581 metal-binding ABC transporter (probably hemin)
YP_001311570.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpe:CPE0570 hypothetical protein
YP_001311571.1	PFAM: protein of unknown function DUF1667; KEGG: cac:CAC1324 uncharacterized predected metal-binding protein
YP_001311572.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cac:CAC1323 NAD(FAD)-dependent dehydrogenase
YP_001311573.1	PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cac:CAC1322 glycerol-3-phosphate dehydrogenase, GLPA
YP_001311574.1	Converts glycerol and ADP to glycerol-3-phosphate and ADP
YP_001311575.1	PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: cac:CAC1320 glycerol-3-phosphate responsive antiterminator (mRNA-binding), GLPP
YP_001311576.1	TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: cac:CAC1319 glycerol uptake facilitator protein, GLPF
YP_001311577.1	PFAM: phosphoribulokinase/uridine kinase; KEGG: cac:CAC0672 fision threonyl-tRNA synthetase (N-terminal part) and uridine kinase
YP_001311578.1	PFAM: protein of unknown function DUF421; KEGG: cac:CAC0671 ortholog YrbG, YetE, YkjA, YdfS, YdfR B.subtilis
YP_001311579.1	KEGG: cpf:CPF_1556 hypothetical protein
YP_001311580.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_001311581.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_001311582.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_001311583.1	TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; KEGG: tte:TTE2497 predicted kinase related to thiamine pyrophosphokinase
YP_001311584.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_001311585.1	TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: hdu:HD0892 acetylornithine aminotransferase
YP_001311586.1	TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: cth:Cthe_1869 ornithine carbamoyltransferase
YP_001311587.1	PFAM: Excinuclease ABC, C subunit domain protein; UvrB/UvrC protein; KEGG: cac:CAC3468 excinuclease ABC, subunit C (UvrC)
YP_001311588.1	PFAM: nitroreductase; KEGG: ldb:Ldb1039 hypothetical protein
YP_001311589.1	PFAM: NADPH-dependent FMN reductase; KEGG: cac:CAC3341 multimeric flavodoxin WrbA family protein
YP_001311590.1	PFAM: glycoside hydrolase, family 1; KEGG: gka:GK2337 beta-glucosidase
YP_001311591.1	PFAM: GntR family transcriptional regulator; UbiC transcription regulator-associated domain protein; KEGG: cpr:CPR_0527 trehalose operon transcriptional repressor
YP_001311592.1	PFAM: amino acid permease-associated region; KEGG: bce:BC3724 GABA-specific permease
YP_001311593.1	PFAM: major facilitator superfamily MFS_1; KEGG: bld:BLi04069  galactonate transporter; RBL01028
YP_001311594.1	KEGG: ppe:PEPE_0550 pyridine nucleotide-disulphide oxidoreductase
YP_001311595.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ppe:PEPE_0549 AraC family transcriptional regulator (HTH and ligand binding domain)
YP_001311596.1	KEGG: cpe:CPE1351 hypothetical protein
YP_001311597.1	TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: cpf:CPF_1070 PTS system, N-acetylglucosamine-specific IIBC component
YP_001311598.1	TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease, EIIA 1 domain; KEGG: cpf:CPF_0070  PTS system, N-acetylglucosamine-specific IIA component
YP_001311599.1	PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: cac:CAC1355 transcriptional antiterminator (BglG family)
YP_001311600.1	TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system, EIIC; KEGG: lin:lin2832 similar to cellobiose phosphotransferase enzyme IIC component
YP_001311601.1	PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: bcz:BCZK2215 possible ATPase family protein
YP_001311602.1	PFAM: phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit; KEGG: cpe:CPE2577 PTS system, cellobiose-specific II component
YP_001311603.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: lwe:lwe2632 PTS system, beta-glucoside-specific, IIB component
YP_001311604.1	PFAM: sigma-54 factor, interaction domain-containing protein; PTS system fructose subfamily IIA component; PRD domain protein; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: lmo:lmo1721 hypothetical protein
YP_001311605.1	PFAM: adenylate cyclase; KEGG: cpf:CPF_1559  adenylate cyclase
YP_001311606.1	PFAM: fructose-1,6-bisphosphatase; KEGG: cac:CAC1572 fructose-1,6-bisphosphatase
YP_001311607.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: cpe:CPE0097 acyl-CoA dehydrogenase
YP_001311608.1	PFAM: coenzyme A transferase; KEGG: cpe:CPE0096 propionate CoA-transferase
YP_001311609.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cpe:CPE0095 crotonase
YP_001311610.1	TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bld:BLi00603 YdjK
YP_001311611.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cpf:CPF_0086 myo-inositol catabolism protein IolE
YP_001311612.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: ctc:CTC00511 myo-inositol 2-dehydrogenase
YP_001311613.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein, central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cpe:CPE0089 myo-inositol catabolism protein
YP_001311614.1	PFAM: Myo-inositol catabolism IolB domain protein; KEGG: ctc:CTC00509 myo-inositol catabolism protein iolB
YP_001311615.1	PFAM: PfkB domain protein; KEGG: cpf:CPF_0082 myo-inositol catabolism protein IolC
YP_001311616.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_001311617.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: cpf:CPF_0080 alcohol dehydrogenase, iron-containing
YP_001311618.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: cpe:CPE0084 transcription repressor of myo-inositol catabolism operon
YP_001311619.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ste:STER_0426 predicted sugar phosphatase of HAD family
YP_001311620.1	PFAM: sigma-54 factor, interaction domain-containing protein; PTS system fructose subfamily IIA component; PRD domain protein; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: stm:STM4534  transcriptional regulator
YP_001311621.1	PFAM: sugar isomerase (SIS); KEGG: stm:STM3601  phosphosugar isomerase
YP_001311622.1	PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: ppe:PEPE_0198 mannose-specific PTS system component IID
YP_001311623.1	PFAM: phosphotransferase system PTS, sorbose-specific IIC subunit; KEGG: ppe:PEPE_0197 mannose-specific PTS system component IIC
YP_001311624.1	PFAM: PTS system sorbose subfamily IIB component; KEGG: stm:STM0576  PTS system, mannose-specific II component
YP_001311625.1	PFAM: PTS system fructose subfamily IIA component; KEGG: fnu:FN0632 PTS system, IIA component
YP_001311626.1	PFAM: GntR family transcriptional regulator; UbiC transcription regulator-associated domain protein; KEGG: gka:GK1855 transcriptional regulator (GntR family)
YP_001311627.1	TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: tte:TTE1023 6-phosphogluconolactonase/Glucosamine-6- phosphate isomerase/deaminase
YP_001311628.1	PFAM: GntR family transcriptional regulator; UbiC transcription regulator-associated domain protein; KEGG: cpr:CPR_2646 transcriptional regulator, GntR family
YP_001311629.1	TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: cpf:CPF_2434 N-acetylglucosamine-6-phosphate deacetylase
YP_001311630.1	PFAM: ROK family protein; KEGG: gka:GK0217 transcriptional regulator
YP_001311631.1	PFAM: glycoside hydrolase, family 1; KEGG: cpf:CPF_2609 glycosyl hydrolase, family 1
YP_001311632.1	PFAM: ROK family protein; KEGG: bha:BH0797 glucose kinase
YP_001311633.1	PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: cno:NT01CX_0626 prephenate dehydrogenase
YP_001311634.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate
YP_001311635.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_001311636.1	PFAM: shikimate kinase; KEGG: cno:NT01CX_0620 shikimate kinase
YP_001311637.1	TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: cpf:CPF_0693 shikimate 5-dehydrogenase
YP_001311638.1	TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: det:DET0461 chorismate mutase / prephenate dehydratase
YP_001311639.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_001311640.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_001311641.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_001311642.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate
YP_001311643.1	essential for production of a quorum sensing autoinducing peptide
YP_001311644.1	KEGG: lin:lin0043 similar to sensor histidine kinase (AgrC from Staphylococcus)
YP_001311645.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: cac:CAC0081 accessory gene regulator protein A
YP_001311646.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: tte:TTE2354 ABC-type multidrug/protein/lipid transport system, ATPase component
YP_001311647.1	KEGG: cpe:CPE0306  ABC-2 type transport system permease
YP_001311648.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: ctc:CTC00240 ABC transporter ATP-binding protein
YP_001311649.1	PFAM: NADPH-dependent FMN reductase; KEGG: spd:SPD_1750 multimeric flavodoxin WrbA (general function prediction only)
YP_001311650.1	KEGG: efa:EF0527 CylM protein
YP_001311652.1	PFAM: proton/sugar symporter, LacY; major facilitator superfamily MFS_1; KEGG: oih:OB0724 hypothetical protein
YP_001311653.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: cpr:CPR_1418 cardiolipin synthetase
YP_001311654.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_001311655.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY3866 hypothetical protein
YP_001311656.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: dsy:DSY3867 hypothetical protein
YP_001311658.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: cno:NT01CX_0601 D-isomer specific 2-hydroxyacid dehydrogenases
YP_001311659.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_001311660.1	KEGG: cpe:CPE0665 hypothetical protein
YP_001311661.1	TIGRFAM: HesB-related (seleno)protein; KEGG: cpr:CPR_0641 HesB-related selenoprotein
YP_001311663.1	KEGG: cpe:CPE0657 hypothetical protein
YP_001311664.1	PFAM: ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA; KEGG: cpr:CPR_0623 hypothetical protein
YP_001311665.1	KEGG: cpr:CPR_0622 hypothetical protein
YP_001311666.1	PFAM: RelA/SpoT domain protein; KEGG: cpr:CPR_0621 RelA/SpoT family protein
YP_001311667.1	KEGG: cno:NT01CX_1368 hypothetical protein
YP_001311668.1	PFAM: chemotaxis sensory transducer; KEGG: cac:CAC0443 methyl-accepting chemotaxis protein
YP_001311669.1	PFAM: Aldose 1-epimerase; KEGG: cpf:CPF_0279  aldose 1-epimerase
YP_001311670.1	PFAM: metallophosphoesterase; KEGG: cpr:CPR_0620 Ser/Thr protein phosphatase family protein
YP_001311671.1	KEGG: cno:NT01CX_1366 flagella-associated protein
YP_001311672.1	KEGG: cac:CAC0638 hypothetical protein
YP_001311673.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_001311674.1	KEGG: cac:CAC1487 uncharacterized protein, similar to TlpA of B.subtilis
YP_001311676.1	PFAM: Coat F domain protein; KEGG: cac:CAC2780 spore coat protein, CotF related
YP_001311678.1	PFAM: Coat F domain protein; KEGG: cac:CAC2780 spore coat protein, CotF related
YP_001311679.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_001311680.1	PFAM: AAA-4 family protein; KEGG: cno:NT01CX_1362 divergent AAA domain family
YP_001311681.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cno:NT01CX_1361 signal transduction protein containing diguanilate cyclase/phosphodiesterase domain
YP_001311682.1	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cpf:CPF_0487 UTP-glucose-1-phosphate uridylyltransferase
YP_001311683.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: cno:NT01CX_1781 lipopolysaccharide biosynthesis protein
YP_001311684.1	PFAM: sugar transferase; KEGG: bth:BT_0611 glycosyltransferase
YP_001311685.1	PFAM: glycosyl transferase, group 1; KEGG: plu:plu4805 WblI protein
YP_001311686.1	PFAM:  cell wall binding repeat-containing protein; KEGG: pfa:PFB0150c protein kinase
YP_001311687.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cac:CAC1079 uncharacterized protein, related to enterotoxins of other Clostridiales
YP_001311688.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ctc:CTC00412 alkaline phosphatase synthesis sensor protein PhoR
YP_001311689.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC00411 alkaline phosphatase synthesis transcriptional regulatory protein PhoP
YP_001311690.1	PFAM: glycosyl transferase, group 1; KEGG: bce:BC5269 amylovoran biosynthesis AmsK
YP_001311691.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mmp:MMP0357 UDP-N-acetylglucosamine 2-epimerase
YP_001311692.1	KEGG: bsu:BG12692 biosynthesis of teichuronic acid, polymerization
YP_001311693.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cpe:CPE0463 capsular polysaccharide biosynthesis protein
YP_001311694.1	PFAM: glycosyl transferase, family 2; KEGG: cpf:CPF_0715 glycosyl transferase, group 2 family protein
YP_001311695.1	PFAM: LicD family protein; KEGG: cpr:CPR_0589 LicD family protein
YP_001311696.1	PFAM: glycosyl transferase, family 2; KEGG: mla:Mlab_1428 hypothetical protein
YP_001311697.1	PFAM: beta-lactamase domain protein; cell wall binding repeat-containing protein; KEGG: cpf:CPF_0611 cell wall binding repeat protein
YP_001311698.1	TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system, EIIC; KEGG: efa:EF0292 PTS system, IIC component
YP_001311699.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: cac:CAC0384 PTS system, cellobiose-specific component BII
YP_001311700.1	PFAM: phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit; KEGG: cac:CAC0383 PTS cellobiose-specific component IIA
YP_001311701.1	KEGG: lwe:lwe2658 hypothetical protein
YP_001311702.1	TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system, EIIC; KEGG: efa:EF0292 PTS system, IIC component
YP_001311703.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: spd:SPD_0233 PTS system, IIB component
YP_001311704.1	PFAM: phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit; KEGG: cac:CAC0383 PTS cellobiose-specific component IIA
YP_001311705.1	PFAM: sigma-54 factor, interaction domain-containing protein; PTS system fructose subfamily IIA component; PRD domain protein; SMART: ATPase AAA; KEGG: cac:CAC0382 possible transcriptional regulator of levanase operon, AAA-ATPase domain (NtrC family), fused to 2 BglG-like domains, ortholog of B.subtilis LevR
YP_001311706.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cpr:CPR_2604 transcriptional regulator, RpiR family
YP_001311707.1	PFAM: glycoside hydrolase, family 1; KEGG: bld:BLi04199 hypothetical protein
YP_001311708.1	TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: cac:CAC1348 transketolase, TKT
YP_001311709.1	TIGRFAM:  transaldolase; PFAM: Transaldolase; KEGG: lwe:lwe2691 transaldolase
YP_001311710.1	PFAM: sugar isomerase (SIS); KEGG: lbr:LVIS_0443 sugar phosphate isomerase
YP_001311711.1	PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: ooe:OEOE_0131 3-hexulose-6-phosphate synthase family protein
YP_001311712.1	PFAM: PfkB domain protein; KEGG: cac:CAC0395 2-keto-3-deoxygluconate kinase (gene kdgK)
YP_001311713.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: lme:LEUM_0500 sugar phosphate isomerase/epimerase
YP_001311714.1	PFAM: LacI family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; KEGG: cac:CAC0393 KDG operon repressor (gene kdgR), LacI family
YP_001311715.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pau:PA14_35330  2-ketogluconate transporter
YP_001311716.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: lpl:lp_0805 hydrolase, HAD superfamily, Cof family
YP_001311717.1	PFAM: glycoside hydrolase, family 31; KEGG: lbr:LVIS_0137 alpha-glucosidase, family 31 of glycosyl hydrolase
YP_001311718.1	KEGG: pac:PPA0594  lysophospholipase
YP_001311719.1	PFAM: glycoside hydrolase, family 31; KEGG: lbr:LVIS_0137 alpha-glucosidase, family 31 of glycosyl hydrolase
YP_001311720.1	PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA3560 oligogalacturonide transporter
YP_001311721.1	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism
YP_001311722.1	PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: mta:Moth_0429 mannitol dehydrogenase
YP_001311723.1	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate
YP_001311724.1	PFAM: GntR family transcriptional regulator; GntR domain protein; KEGG: bld:BLi01354 hypothetical protein
YP_001311725.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: cac:CAC1333 AraC-type sugar metabolism regulator
YP_001311726.1	PFAM: permease; KEGG: cno:NT01CX_2389 predicted permease superfamily
YP_001311727.1	PFAM: Protein of unknown function DUF1980; KEGG: ctc:CTC00938 membrane-spanning protein
YP_001311728.1	PFAM: polysaccharide deacetylase; KEGG: cpr:CPR_0810 polysaccharide deacetylase family protein
YP_001311729.1	PFAM: glycoside hydrolase, family 25; cell wall binding repeat-containing protein; KEGG: spd:SPD_1965 choline binding protein PcpA
YP_001311730.1	PFAM:  cell wall binding repeat-containing protein; Lytic transglycosylase, catalytic; KEGG: cpf:CPF_0550 cell wall binding repeat domain protein
YP_001311731.1	PFAM: sulfatase; KEGG: cpr:CPR_0570 sulfatase family protein
YP_001311732.1	PFAM: periplasmic solute binding protein; KEGG: cpf:CPF_2413 ABC transporter substrate-binding protein
YP_001311733.1	PFAM: glycoside hydrolase, family 1; KEGG: cac:CAC1405 beta-glucosidase
YP_001311734.1	PFAM: glycoside hydrolase, family 4; KEGG: efa:EF1411 glycosyl hydrolase, family 4
YP_001311735.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cac:CAC3026 protein from GDSL (phospholipase B) family of lipolitic enzymes
YP_001311736.1	KEGG: cac:CAC3025 conserved membrane protein, possible permease, YHCI B.subtilis ortholog
YP_001311737.1	PFAM: lipolytic protein, G-D-S-L family; KEGG: cac:CAC3024 acyl-CoA thioesterase family protein
YP_001311738.1	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: pat:Patl_0825 beta-glucosidase
YP_001311739.1	PFAM: glycoside hydrolase, family 30; KEGG: plu:plu2272 unnamed protein product; similar to glucosylceramidase
YP_001311740.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: cpf:CPF_2344 DNA-binding response regulator, AraC family
YP_001311741.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase internal region; KEGG: tte:TTE2344 predicted ATPase
YP_001311742.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dge:Dgeo_2694 binding-protein-dependent transport systems inner membrane component
YP_001311743.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dge:Dgeo_2695 binding-protein-dependent transport systems inner membrane component
YP_001311744.1	PFAM: extracellular solute-binding protein, family 1; KEGG: dge:Dgeo_2696 extracellular solute-binding protein, family 1
YP_001311745.1	KEGG: cac:CAC2610 L-fucose isomerase related protein
YP_001311746.1	PFAM: chemotaxis sensory transducer; KEGG: cth:Cthe_0298 methyl-accepting chemotaxis sensory transducer
YP_001311747.1	TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system, EIIC; KEGG: efa:EF0292 PTS system, IIC component
YP_001311748.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: spd:SPD_0233 PTS system, IIB component
YP_001311749.1	PFAM: phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit; KEGG: spb:M28_Spy1733 PTS system, cellobiose-specific IIA component
YP_001311750.1	PFAM: sigma-54 factor, interaction domain-containing protein; PTS system fructose subfamily IIA component; PRD domain protein; SMART: ATPase AAA; KEGG: cac:CAC0382 possible transcriptional regulator of levanase operon, AAA-ATPase domain (NtrC family), fused to 2 BglG-like domains, ortholog of B.subtilis LevR
YP_001311751.1	KEGG: cno:NT01CX_0286 phage infection protein
YP_001311752.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; KEGG: chy:CHY_1906 sensory box/GGDEF domain/EAL domain protein
YP_001311753.1	KEGG: dde:Dde_3289 hypothetical protein
YP_001311754.1	KEGG: ctc:CTC01451 membrane spanning protein
YP_001311755.1	PFAM: polysaccharide biosynthesis protein; KEGG: cpe:CPE0623 probable capsular polysaccharide synthesis protein
YP_001311756.1	PFAM: regulatory protein, TetR; KEGG: mst:Msp_0971 hypothetical protein
YP_001311757.1	KEGG: mla:Mlab_1736 hypothetical protein
YP_001311758.1	PFAM: Nucleotidyl transferase; KEGG: cpf:CPF_0610 nucleotidyl transferase family protein
YP_001311759.1	PFAM: regulatory protein, MarR; Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: cpr:CPR_0594 choline/ethanolamine kinase family protein
YP_001311760.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpr:CPR_0597 surface protein PspA precursor
YP_001311761.1	KEGG: cth:Cthe_2665 Zn-finger containing protein
YP_001311762.1	PFAM:  cell wall binding repeat-containing protein; cell wall hydrolase/autolysin; KEGG: spd:SPD_0126 pneumococcal surface protein A
YP_001311763.1	PFAM:  cell wall binding repeat-containing protein; cell wall hydrolase/autolysin; KEGG: cpf:CPF_0550 cell wall binding repeat domain protein
YP_001311765.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cac:CAC3544 membrane associated GGDEF domain containing protein
YP_001311766.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cpe:CPE0197 RpiR family transcriptional regulator, glv operon transcriptional regulator
YP_001311767.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cpe:CPE0197 RpiR family transcriptional regulator, glv operon transcriptional regulator
YP_001311768.1	PFAM: glycoside hydrolase, family 4; KEGG: cac:CAC0533 maltose-6'-phosphate glucosidase (glvA)
YP_001311769.1	TIGRFAM: PTS system, alpha-glucoside-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: bsu:BG11848 PTS maltose-specific enzyme IICB component
YP_001311770.1	TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease, EIIA 1 domain; KEGG: cpr:CPR_0092 pts system, glucose-specific IIA component
YP_001311771.1	PFAM: glycosyl transferase, family 2; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cac:CAC3308 glycosyltransferase fused to TPR-repeat domain
YP_001311772.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like; KEGG: cac:CAC3310 predicted UDP-glucose 6-dehydrogenase
YP_001311773.1	KEGG: eli:ELI_13285 UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase
YP_001311774.1	KEGG: swo:Swol_0714 hypothetical protein
YP_001311775.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mja:MJ1066 spore coat polysaccharide biosynthesis protein C (SpsC)
YP_001311776.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pcr:Pcryo_0617 NAD-dependent epimerase/dehydratase
YP_001311777.1	PFAM: glycosyl transferase, group 1; KEGG: cac:CAC3311 TPR-repeat domain fused to glycosyltransferase
YP_001311779.1	KEGG: cac:CAC2776 hypothetical protein
YP_001311780.1	TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: cpr:CPR_0581 peptide chain release factor 3
YP_001311781.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_0126 pneumococcal surface protein A
YP_001311782.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpf:CPF_0550 cell wall binding repeat domain protein
YP_001311783.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_2017 choline binding protein A
YP_001311784.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cac:CAC0430 glycerophosphoryl diester phosphodiesterase
YP_001311785.1	TIGRFAM: cell wall/surface repeat protein; PFAM:  cell wall binding repeat-containing protein; SMART: Ig domain protein, group 2 domain protein; KEGG: spd:SPD_0126 pneumococcal surface protein A
YP_001311786.1	TIGRFAM: cell wall/surface repeat protein; PFAM: PKD domain containing protein; cell wall binding repeat-containing protein; Ig domain protein, group 2 domain protein; KEGG: cth:Cthe_0056 Ig-like, group 2
YP_001311787.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpf:CPF_0550 cell wall binding repeat domain protein
YP_001311788.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC1387 membrane associated chemotaxis sensory transducer protein (MSP domain and HamP domain)
YP_001311789.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpf:CPF_0550 cell wall binding repeat domain protein
YP_001311790.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_2017 choline binding protein A
YP_001311791.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpf:CPF_0550 cell wall binding repeat domain protein
YP_001311792.1	PFAM: ABC transporter; protein of unknown function DUF214; SMART: ATPase AAA; KEGG: lsl:LSL_0210 ABC transporter ATP-binding protein
YP_001311793.1	PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: bth:BT_1177  polysaccharide biosynthesis protein
YP_001311794.1	PFAM: glycosyl transferase, group 1; KEGG: lsl:LSL_0990 glycosyltransferase
YP_001311795.1	PFAM: glycosyl transferase, family 2; KEGG: cpe:CPE0481 beta-1,4-galactosyltransferase
YP_001311796.1	PFAM: glycosyl transferase, group 1; KEGG: cpf:CPF_0914 capsular polysaccharide biosynthesis protein
YP_001311797.1	KEGG: cpe:CPE1986 two-component sensor histidine kinase
YP_001311798.1	KEGG: lil:LA1622 galactoside O-acetyltransferase
YP_001311799.1	PFAM: glycosyl transferase, group 1; KEGG: tte:TTE0949 predicted glycosyltransferase
YP_001311800.1	PFAM: Glycosyltransferase 28, C-terminal domain; KEGG: lbu:LBUL_1854 glycosyltransferase, family 28
YP_001311801.1	PFAM: Oligosaccharide biosynthesis protein Alg14 like; KEGG: stl:stu1105 exopolysaccharide biosynthesis protein, glycosyltransferase
YP_001311802.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like; KEGG: cpe:CPE0494 UDPglucose 6-dehydrogenase
YP_001311803.1	PFAM: sugar transferase; KEGG: cpr:CPR_0454 glycosyltransferase
YP_001311804.1	PFAM: PHP C-terminal domain protein; KEGG: cpf:CPF_0243 capsular polysaccharide biosynthesis protein
YP_001311805.1	TIGRFAM: capsular exopolysaccharide family; KEGG: cpf:CPF_0465 capsular polysaccharide biosynthesis protein
YP_001311806.1	PFAM: lipopolysaccharide biosynthesis protein; KEGG: cpe:CPE0491 capsular polysaccharide biosynthsis protein
YP_001311807.1	PFAM: protein of unknown function UPF0118; KEGG: cac:CAC2432 predicted permease
YP_001311808.1	PFAM: NLP/P60 protein; KEGG: cac:CAC0309 cell wall-associated hydrolase
YP_001311809.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_2028 choline binding protein D
YP_001311810.1	PFAM: glycosyl transferase, family 2; KEGG: efa:EF2180 glycosyl transferase, group 2 family protein
YP_001311811.1	KEGG: hsa:729900 similar to Golgin subfamily A member 2 (Cis-Golgi matrix protein GM130)
YP_001311812.1	PFAM: Methyltransferase type 12; KEGG: ppd:Ppro_2106 methyltransferase type 12
YP_001311813.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: hch:HCH_02231 ABC-type polysaccharide/polyol phosphate transport system, ATPase component
YP_001311814.1	PFAM: ABC transporter; KEGG: efa:EF2183 ABC transporter permease
YP_001311815.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ljo:LJ1052 dTDP-4-dehydrorhamnose reductase
YP_001311816.1	PFAM: glycosyl transferase, family 2; KEGG: bcl:ABC3693 glycosyltransferase
YP_001311817.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: lga:LGAS_1136 dTDP-D-glucose 4,6-dehydratase
YP_001311818.1	TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: efa:EF2193 dTDP-4-dehydrorhamnose 3,5-epimerase
YP_001311819.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: lga:LGAS_1135 dTDP-glucose pyrophosphorylase
YP_001311820.1	PFAM: sugar transferase; KEGG: dsy:DSY3322 hypothetical protein
YP_001311821.1	PFAM: glycosyl transferase, family 2; KEGG: mst:Msp_0207 predicted glycosyltransferase
YP_001311822.1	PFAM: O-antigen polymerase; KEGG: dsy:DSY3328 hypothetical protein
YP_001311823.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_1965 choline binding protein PcpA
YP_001311824.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_2017 choline binding protein A
YP_001311825.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_2017 choline binding protein A
YP_001311826.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_2017 choline binding protein A
YP_001311827.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spn:SP_2190 choline binding protein A
YP_001311828.1	PFAM:  cell wall binding repeat-containing protein; KEGG: cpf:CPF_0550 cell wall binding repeat domain protein
YP_001311829.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_1965 choline binding protein PcpA
YP_001311834.1	PFAM: protein of unknown function DUF161; KEGG: cpe:CPE2365 hypothetical protein
YP_001311835.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC00888 methyl-accepting chemotaxis protein
YP_001311836.1	PFAM:  carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: ctc:CTC02455 cyclic beta 1-2 glucan synthetase
YP_001311837.1	catalyzes the removal of amino acids from the N termini of peptides
YP_001311838.1	TIGRFAM: phage replisome organizer, KEGG: lmo:lmo2317 similar to protein gp49
YP_001311839.1	TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: cpf:CPF_2161 dihydrodipicolinate synthase
YP_001311840.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cpf:CPF_0586 cation efflux family protein
YP_001311841.1	KEGG: bch:Bcen2424_0018 hypothetical protein
YP_001311842.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpf:CPF_0583 amino acid ABC transporter ATP-binding protein
YP_001311843.1	TIGRFAM: polar amino acid ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sha:SH1104 hypothetical protein
YP_001311844.1	PFAM: extracellular solute-binding protein, family 3; KEGG: cpe:CPE0600 probable amino acid ABC transporter
YP_001311845.1	KEGG: cpr:CPR_0566 helicase
YP_001311846.1	KEGG: cpr:CPR_0565 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase AAA, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: ATPase AAA
YP_001311847.1	KEGG: cpf:CPF_0577 hypothetical protein
YP_001311848.1	TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: cpr:CPR_0564 signal peptidase I
YP_001311849.1	TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: cpr:CPR_0564 signal peptidase I
YP_001311850.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cpf:CPF_0576 diaminopimelate decarboxylase
YP_001311851.1	KEGG: cac:CAC0148 predicted enzyme with TIM-barrel fold
YP_001311852.1	KEGG: rno:686576 hypothetical protein LOC686576
YP_001311853.1	KEGG: lwe:lwe0571  secreted protein
YP_001311854.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cno:NT01CX_0316 membrane assosiated methyl-accepting chemotaxis protein with HAMP domain
YP_001311855.1	KEGG: bha:BH2521 transposase (21)
YP_001311856.1	KEGG: bha:BH2520 transposase related protein (20)
YP_001311857.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001311858.1	KEGG: cpf:CPF_1398 hypothetical protein
YP_001311859.1	PFAM: phosphoesterase, DHHA1; Threonyl/alanyl tRNA synthetase, SAD; KEGG: cpf:CPF_0714 DHHA1 domain protein
YP_001311860.1	PFAM: GntR family transcriptional regulator; UbiC transcription regulator-associated domain protein; KEGG: cac:CAC3502 transcriptional regulator, fadR family
YP_001311861.1	PFAM: PfkB domain protein; KEGG: stm:STM3600  sugar kinase
YP_001311862.1	PFAM: sugar isomerase (SIS); KEGG: cac:CAC3501 predicted phosphosugar isomerase
YP_001311863.1	PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: cpr:CPR_0567 amino acid ABC transporter
YP_001311864.1	PFAM: Heavy metal transport/detoxification protein; KEGG: dsy:DSY4509 hypothetical protein
YP_001311865.1	TIGRFAM: ATPase P; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY4510 hypothetical protein
YP_001311866.1	PFAM: protein of unknown function DUF156; KEGG: cpr:CPR_0193 hypothetical protein
YP_001311867.1	TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease, EIIA 1 domain; KEGG: bsu:BG11450  PTS glucose-specific enzyme IIA component
YP_001311868.1	PFAM: glycoside hydrolase, family 4; KEGG: eca:ECA3226 6-phospho-alpha-glucosidase
YP_001311869.1	PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: cac:CAC3425 PTS system, (possibly glucose-specific) IIBC component
YP_001311870.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: efa:EF2259 phosphosugar-binding transcriptional regulator
YP_001311871.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase, HD region; KEGG: cpf:CPF_1164  sensory box-containing diguanylate cyclase
YP_001311872.1	TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: btk:BT9727_3419 N-acyl-L-amino acid amidohydrolase
YP_001311873.1	PFAM: Abortive infection protein; KEGG: ssa:SSA_1079 hypothetical protein
YP_001311874.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cac:CAC1665 predicted amidohydrolase
YP_001311875.1	KEGG: cac:CAC0920 protein related to MifH/DopD protein family, function in bacteria is unknown; related to MifH/DopD protein family
YP_001311876.1	PFAM: response regulator receiver; KEGG: ace:Acel_2099 response regulator receiver modulated diguanylate phosphodiesterase
YP_001311877.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sfr:Sfri_1019 PAS/PAC sensor hybrid histidine kinase
YP_001311879.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ade:Adeh_0219 hemerythrin-like, metal-binding protein
YP_001311881.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: gsu:GSU2929 hypothetical protein
YP_001311882.1	PFAM: response regulator receiver; KEGG: cth:Cthe_0805 response regulator receiver protein
YP_001311883.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dsy:DSY3378 hypothetical protein
YP_001311884.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC0120 membrane-associated methyl-accepting chemotaxis protein with HAMP domain
YP_001311885.1	PFAM: CheW domain protein; KEGG: cth:Cthe_0809 CheW protein
YP_001311886.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cth:Cthe_0298 methyl-accepting chemotaxis sensory transducer
YP_001311887.1	PFAM: response regulator receiver; KEGG: ctc:CTC01729 chemotaxis protein cheY
YP_001311888.1	PFAM: LuxR family transcriptional regulator; response regulator receiver; KEGG: cno:NT01CX_1314 response regulator (CheY-like recever domain and HTH)
YP_001311889.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: cth:Cthe_0807 response regulator receiver modulated CheB methylesterase
YP_001311890.1	PFAM: MCP methyltransferase, CheR-type; KEGG: cth:Cthe_0808 MCP methyltransferase, CheR-type
YP_001311891.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cth:Cthe_0039 methyl-accepting chemotaxis sensory transducer
YP_001311892.1	PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cth:Cthe_0810 chemotaxis protein CheAs
YP_001311893.1	PFAM: OmpA/MotB domain protein; KEGG: cac:CAC1845 flagellar motor protein MotB
YP_001311894.1	With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.
YP_001311895.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cno:NT01CX_0316 membrane assosiated methyl-accepting chemotaxis protein with HAMP domain
YP_001311896.1	PFAM: glycoside hydrolase, family 1; KEGG: lwe:lwe0245 glycosyl hydrolase, family 1
YP_001311897.1	PFAM: Rubrerythrin; manganese containing catalase; KEGG: cac:CAC2800 CotJC-like protein (GS80 family)
YP_001311898.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cth:Cthe_1546 4Fe-4S ferredoxin, iron-sulfur binding
YP_001311899.1	PFAM: GntR family transcriptional regulator; UbiC transcription regulator-associated domain protein; KEGG: eca:ECA0190 GntR-family transcriptional regulator
YP_001311900.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: eca:ECA0189  mandelate racemase / muconate lactonizing enzyme
YP_001311901.1	TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease, EIIA 1 domain; phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: eca:ECA0188 PTS system, IIABC component
YP_001311902.1	PFAM: aminoglycoside 3-N-acetyltransferase; KEGG: bcz:BCZK2651 aminoglycoside N3'-acetyltransferase
YP_001311903.1	PFAM: helix-turn-helix- domain containing protein, AraC type; Cupin 2, conserved barrel domain protein; KEGG: lmo:lmo2164 hypothetical protein
YP_001311904.1	PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: lwe:lwe2175 oxidoreductase, Gfo/Idh/MocA family
YP_001311905.1	PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: gka:GK2111 hypothetical protein
YP_001311906.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: tte:TTE1951 predicted dehydrogenase and related proteins
YP_001311907.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: zmo:ZMO1264  mandelate racemase
YP_001311908.1	TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, beta-glucoside-specific IIABC subunit; PFAM: sugar-specific permease, EIIA 1 domain; phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: lca:LSEI_1105 beta-glucosides PTS, EIIBCA
YP_001311909.1	PFAM: glycoside hydrolase, family 4; KEGG: lwe:lwe0496 glycosyl hydrolase, family 4
YP_001311910.1	PFAM: helix-turn-helix protein RpiR; KEGG: lwe:lwe2648 phosphosugar-binding transcriptional regulator, RpiR family
YP_001311911.1	KEGG: ppr:PBPRB1872  galactoside ABC transporter periplasmic D-galactose/D-glucose-binding protein
YP_001311912.1	TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: cpe:CPE0367 RNA methyltransferase
YP_001311913.1	TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; KEGG: cpr:CPR_0342 pyruvate kinase
YP_001311914.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_001311915.1	catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.
YP_001311916.1	PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: ppd:Ppro_0287 stress responsive alpha-beta barrel domain protein
YP_001311917.1	PFAM: protein of unknown function DUF199; KEGG: cpr:CPR_0337 hypothetical protein
YP_001311918.1	PFAM: protein of unknown function UPF0052 and CofD; KEGG: ctc:CTC02494 transporter
YP_001311919.1	PFAM: uncharacterised P-loop ATPase protein UPF0042; KEGG: cpr:CPR_0335 ATP-binding protein
YP_001311920.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_001311921.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_001311922.1	PFAM: penicillin-binding protein, transpeptidase; KEGG: cac:CAC0506 penicillin-binding protein
YP_001311923.1	PFAM: cell cycle protein; KEGG: cpr:CPR_0331 cell cycle protein, FtsW/RodA/SpoVE family
YP_001311924.1	PFAM: Forkhead-associated protein; KEGG: cpf:CPF_0338 FHA domain protein
YP_001311925.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_001311926.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_001311927.1	KEGG: cno:NT01CX_1273 membrane protein containing C-terminal PDZ domain
YP_001311928.1	TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: cpe:CPE0301 probable carboxyl-terminal proteinase
YP_001311929.1	PFAM: protein of unknown function DUF214; KEGG: cpf:CPF_0297  cell division protein
YP_001311930.1	TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cpr:CPR_0291 cell division ATP-binding protein FtsE
YP_001311931.1	PFAM: protein of unknown function DUF161; KEGG: cac:CAC0496 uncharacterized conserved protein, YitT family
YP_001311932.1	PFAM: Transketolase, central region; Transketolase domain protein; KEGG: cpr:CPR_0288 transketolase
YP_001311933.1	PFAM: Transketolase domain protein; KEGG: cpr:CPR_0287 transketolase
YP_001311934.1	PFAM: PemK family protein; KEGG: cpr:CPR_0286 PemK family protein
YP_001311935.1	KEGG: cpf:CPF_0290 hypothetical protein
YP_001311936.1	KEGG: cac:CAC0491 uncharacterized probably secreted protein, homolog of YDCC B.subtilis
YP_001311937.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: hydroxyethylthiazole kinase; protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: cpr:CPR_0283 carbohydrate kinase family protein
YP_001311938.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_001311939.1	KEGG: ctc:CTC02517 hypothetical protein
YP_001311940.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cpr:CPR_0274 single-strand binding protein family
YP_001311941.1	TIGRFAM:  ribonuclease BN; PFAM: ribonuclease BN; KEGG: cpf:CPF_0281 YihY family protein
YP_001311942.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like; KEGG: cno:NT01CX_1780 UDP-glucose 6-dehydrogenase
YP_001311943.1	KEGG: swo:Swol_0704 hexapeptide transferase family protein
YP_001311944.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: swo:Swol_0703 pyridoxal phosphate-dependent enzyme
YP_001311945.1	PFAM: DEAD_2 domain protein; SMART: DEXDc2; helicase c2; KEGG: cno:NT01CX_0936 DNA repair helicase, truncation
YP_001311946.1	PFAM: Domain of unknown function DUF1836; KEGG: cpf:CPF_0278 hypothetical protein
YP_001311947.1	TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cpr:CPR_0268 transcriptional regulator, AbrB family
YP_001311948.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cno:NT01CX_0752 tetrapyrrole (corrin/porphyrin) methylase
YP_001311949.1	PFAM: methyltransferase small; KEGG: cpe:CPE0279 hypothetical protein
YP_001311950.1	PFAM: NLP/P60 protein; KEGG: cpf:CPF_0274 SagA protein
YP_001311951.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cac:CAC3231 predicted phosphatase, HAD superfamily
YP_001311952.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cpf:CPF_0262 peptidyl-prolyl cis-trans isomerase family protein
YP_001311953.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_001311954.1	KEGG: cpr:CPR_1540 hypothetical protein
YP_001311955.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_001311956.1	TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cpf:CPF_0130 CinA family protein
YP_001311957.1	TIGRFAM:  glucokinase, ROK family; PFAM: ROK family protein; KEGG: cpr:CPR_0098 glucose kinase
YP_001311958.1	KEGG: cpr:CPR_0097 hypothetical protein
YP_001311959.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001311960.1	KEGG: cac:CAC1982 predicted membrane protein
YP_001311961.1	PFAM: VanZ family protein; KEGG: cpr:CPR_0088 acetobutylicum phosphotransbutyrylase
YP_001311962.1	KEGG: cpr:CPR_0085 hypothetical protein
YP_001311963.1	PFAM: protein of unknown function DUF299; KEGG: cpe:CPE2242 hypothetical protein
YP_001311964.1	KEGG: cpe:CPE2244 lipoprotein signal peptidase
YP_001311965.1	TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: baa:BA_0106 lactate/malate dehydrogenase, NAD binding domain
YP_001311966.1	TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; PFAM: Nucleotidyl transferase; KEGG: cpe:CPE0069 glycogen biosynthesis protein
YP_001311967.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_001311968.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: cpr:CPR_0084 pullulanase
YP_001311969.1	TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; KEGG: cpr:CPR_0083 glycogen phosphorylase
YP_001311970.1	catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose
YP_001311971.1	TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase, catalytic region; alpha amylase, C-terminal all-beta; SMART: alpha amylase, catalytic sub domain; KEGG: cpf:CPF_1840 1,4-alpha-glucan branching enzyme
YP_001311972.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cpr:CPR_0069 acetyltransferase, GNAT family
YP_001311973.1	TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: msu:MS2377 PTS system, mannose-specific IID component
YP_001311974.1	TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS, sorbose-specific IIC subunit; KEGG: msu:MS2378 PTS system, mannose-specific IIC component
YP_001311975.1	TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PFAM: PTS system sorbose subfamily IIB component; KEGG: stm:STM1830 Sugar Specific PTS family, mannose-specific enzyme IIAB
YP_001311976.1	TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA subunit; PFAM: PTS system fructose subfamily IIA component; KEGG: lwe:lwe0743 sugar phosphotransferasesystem component IIA
YP_001311977.1	PFAM: sigma-54 factor, interaction domain-containing protein; PTS system fructose subfamily IIA component; PRD domain protein; SMART: ATPase AAA; KEGG: lwe:lwe0744 transcriptional regulator LevR family
YP_001311978.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cpr:CPR_0067 HesA/MoeB/ThiF family protein
YP_001311979.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_001311980.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: cac:CAC2547 possible membrane-associated methyl-accepting chemotaxis protein fused to HAMP domain
YP_001311981.1	PFAM: nitroreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cac:CAC3359 nitroreductase fused to ferredoxin domain
YP_001311983.1	PFAM: Ion transport 2 domain protein; KEGG: vvy:VV0782  potassium channel protein
YP_001311984.1	KEGG: ctc:CTC02189 hypothetical protein
YP_001311985.1	PFAM: regulatory protein, MarR; KEGG: bat:BAS2992 transcriptional regulator, MarR family
YP_001311986.1	PFAM: major facilitator superfamily MFS_1; KEGG: lmf:LMOf2365_2817 major facilitator family transporter
YP_001311987.1	KEGG: cno:NT01CX_1207 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein
YP_001311988.1	PFAM: uncharacterised conserved protein UCP033563; KEGG: cac:CAC0016 related to HTH domain of SpoOJ/ParA/ParB/repB family, involved in chromosome partitioning
YP_001311989.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: cac:CAC0015 D-3-phosphoglycerate dehydrogenase
YP_001311990.1	PFAM: extracellular solute-binding protein, family 5; KEGG: cac:CAC3634 oligopeptide ABC transporter periplasmic protein component
YP_001311991.1	TIGRFAM: peptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter C-terminal domain protein; SMART: ATPase AAA; KEGG: cac:CAC3635 oligopeptide ABC transporter ATPase component
YP_001311992.1	TIGRFAM: peptide ABC transporter ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter C-terminal domain protein; SMART: ATPase AAA; KEGG: cac:CAC3642 oligopeptide ABC transporter ATPase component
YP_001311993.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC3643 oligopeptide ABC transporter permease component
YP_001311994.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC3644 oligopeptide ABC transporter permease component
YP_001311995.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: cac:CAC1574 NAD-dependent 4-hydroxybutyrate dehydrogenase
YP_001311996.1	catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate
YP_001311997.1	PFAM: LuxR family transcriptional regulator; KEGG: mva:Mvan_5474 two component transcriptional regulator, LuxR family
YP_001311998.1	PFAM: aldehyde dehydrogenase; KEGG: lpn:lpg0238 glycine betaine aldehyde dehydrogenase
YP_001311999.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: pab:PAB0090 D-aminoacylase (aspartate, glutamate etc)
YP_001312000.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rxy:Rxyl_2915 binding-protein-dependent transport systems inner membrane component
YP_001312001.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bat:BAS1200 spermidine/putrescine ABC transporter permease
YP_001312002.1	TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; Transport-associated OB domain protein; SMART: ATPase AAA; KEGG: mkm:Mkms_2612 spermidine/putrescine ABC transporter ATPase subunit
YP_001312003.1	PFAM: extracellular solute-binding protein, family 1; KEGG: sth:STH468 spermidine/putrescine ABC transporter spermidine/putrescine-binding protein
YP_001312004.1	PFAM: nitrogen regulatory protein P-II; KEGG: mta:Moth_0193 nitrogen regulatory protein P-II (GlnB, GlnK)
YP_001312005.1	PFAM: LuxR family transcriptional regulator; KEGG: sil:SPO1488 transcriptional regulator, LuxR family
YP_001312006.1	KEGG: cpr:CPR_0061 hypothetical protein
YP_001312007.1	PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: mfl:Mfl241  membrane metallo endopeptidase
YP_001312008.1	PFAM:  cell wall binding repeat-containing protein; CHAP domain containing protein; SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: cpf:CPF_0550 cell wall binding repeat domain protein
YP_001312009.1	KEGG: cno:NT01CX_0822 sigma-K factor processing regulatory protein BofA
YP_001312010.1	KEGG: cpf:CPF_0055 hypothetical protein
YP_001312011.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_001312012.1	PFAM: conserved hypothetical protein 103; KEGG: cac:CAC0126 uncharacterized conserved protein, YbaB family
YP_001312013.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_001312014.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_001312015.1	PFAM: dihydrofolate reductase region; KEGG: cpr:CPR_0054 dihydrofolate reductase
YP_001312016.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: cff:CFF8240_0924 fumarylacetoacetate hydrolase family protein
YP_001312017.1	KEGG: ctc:CTC00989 hypothetical protein
YP_001312018.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_001312019.1	TIGRFAM: integral membrane protein TIGR01906; PFAM: Integral membrane protein 1906; KEGG: cpr:CPR_2277 integral membrane protein
YP_001312020.1	PFAM: CheC domain protein; KEGG: cac:CAC0586 CheX protein (uncharacterized ORF in chemotaxis operon)
YP_001312021.1	PFAM: response regulator receiver; KEGG: cac:CAC0585 N-terminal CheY reciever domain fused to C-terminal uncharacterized CheX-like domain
YP_001312022.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_001312023.1	TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: dsy:DSY1289 hypothetical protein
YP_001312024.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: ctc:CTC01849 transcriptional regulatory protein
YP_001312025.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase internal region; KEGG: bld:BLi00440  ABC transporter (permease); RBL00398
YP_001312026.1	PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH3680 multiple sugar transport system substrate-binding protein
YP_001312027.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cno:NT01CX_0316 membrane assosiated methyl-accepting chemotaxis protein with HAMP domain
YP_001312028.1	KEGG: rle:pRL90225  binding periplasmic protein of ABC transporter
YP_001312029.1	PFAM: inner-membrane translocator; KEGG: tte:TTE0205 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
YP_001312030.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component
YP_001312031.1	PFAM: nitroreductase; KEGG: cac:CAC2508 nitroreductase
YP_001312032.1	PFAM: NADPH-dependent FMN reductase; KEGG: cac:CAC2520 multimeric flavodoxin (WrbA) domain containing protein
YP_001312033.1	PFAM: helix-turn-helix, HxlR type; KEGG: cac:CAC0195 predicted transcriptional regulator
YP_001312034.1	PFAM: glycoside hydrolase, family 43; KEGG: oih:OB3125 xylan 1,4-beta-xylosidase
YP_001312035.1	PFAM: glycoside hydrolase, family 43; KEGG: pat:Patl_3728 alpha-L-arabinofuranosidase
YP_001312036.1	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: pat:Patl_0825 beta-glucosidase
YP_001312037.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: cpr:CPR_1432 transcriptional regulator, AraC family
YP_001312038.1	PFAM: helix-turn-helix protein RpiR; KEGG: cac:CAC3424 transcriptional regulator, RpiR family
YP_001312039.1	TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: cac:CAC3425 PTS system, (possibly glucose-specific) IIBC component
YP_001312040.1	PFAM: glycoside hydrolase, family 4; KEGG: cac:CAC3426 6-phospho-alpha-glucosidase
YP_001312042.1	TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cac:CAC3668 MDR-type permease
YP_001312043.1	PFAM: regulatory protein, MarR; KEGG: cac:CAC3669 transcriptional regulator, MarR/EmrR family
YP_001312044.1	TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease, EIIA 1 domain; KEGG: bsu:BG11450  PTS glucose-specific enzyme IIA component
YP_001312045.1	TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: bcl:ABC0713 PTS system, glucose-specific enzyme II, ABC component
YP_001312046.1	PFAM: glycoside hydrolase, family 4; KEGG: bcl:ABC2078 maltose-6'-phosphate glucosidase
YP_001312047.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cac:CAC0191 transcriptional regulator, RpiR family
YP_001312048.1	PFAM:  cell wall binding repeat-containing protein; KEGG: spd:SPD_0126 pneumococcal surface protein A
YP_001312050.1	KEGG: syf:Synpcc7942_0761 hypothetical protein
YP_001312052.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: cya:CYA_2410 RNA polymerase sigma factor RpoD
YP_001312053.1	TIGRFAM: phage minor structural protein; KEGG: cno:NT01CX_2159 phage endopeptidase
YP_001312054.1	KEGG: pfa:PF11_0207 hypothetical protein
YP_001312056.1	KEGG: tte:TTE2242 transposase
YP_001312057.1	KEGG: sao:SAOUHSC_02218 hypothetical protein
YP_001312058.1	PFAM: helix-turn-helix domain protein; KEGG: gfo:orf2614 HTH_3 family transcriptional regulator protein
YP_001312059.1	PFAM: helix-turn-helix domain protein
YP_001312060.1	KEGG: bcl:ABC1368 hypothetical protein
YP_001312063.1	PFAM: phage integrase family protein; KEGG: cpe:CPE1095 probable integrase/recombinase
YP_001312064.1	PFAM: phage integrase family protein; KEGG: gka:GK2913 integrase/recombinase
YP_001312065.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cac:CAC0877 cyclopropane fatty acid synthase
YP_001312066.1	PFAM: GntR family transcriptional regulator; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: cac:CAC2546 transcriptional regulator, FadR family
YP_001312067.1	KEGG: cac:CAC0610 hypothetical protein
YP_001312068.1	PFAM: LrgB family protein; KEGG: cac:CAC0611 predicted membrane protein, YohK family
YP_001312069.1	PFAM: LrgA family protein; KEGG: cac:CAC0612 predicted membrane protein YohJ family
YP_001312070.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: cac:CAC0123 cytosine deaminase
YP_001312071.1	PFAM: PfkB domain protein; KEGG: cpf:CPF_1782 fructokinase
YP_001312072.1	TIGRFAM: sucrose-6-phosphate hydrolase; PFAM: Glycosyl hydrolase family 32, N terminal domain protein; Glycosyl hydrolase family 32, C-terminal domain protein; SMART: glycoside hydrolase, family 32; KEGG: cpr:CPR_1511 sucrose-6-phosphate hydrolase
YP_001312073.1	PFAM: LacI family transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator; KEGG: cpe:CPE1533 probable transcriptional
YP_001312074.1	TIGRFAM: PTS system, sucrose-specific IIBC subunit; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: cpr:CPR_1513 PTS system, sucrose-specific IIBC component
YP_001312077.1	PFAM: StbA family protein; KEGG: hha:Hhal_1997 hypothetical protein
YP_001312079.1	TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease, EIIA 1 domain; KEGG: bsu:BG11450  PTS glucose-specific enzyme IIA component
YP_001312080.1	PFAM: glycoside hydrolase, family 4; KEGG: lca:LSEI_2684 mannose-6-phosphate isomerase
YP_001312081.1	TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: eca:ECA3225 PTS system, alpha-glucoside-specific IIbc component
YP_001312082.1	PFAM: sugar isomerase (SIS); KEGG: eca:ECA3228 RpiR-family transcriptional regulator
YP_001312086.1	KEGG: cac:CAC3515 alpha/beta superfamily hydrolase (possible peptidase)
YP_001312087.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cac:CAC3516 membrane-associated histidine kinase with HAMP domain
YP_001312088.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC3517 response regulator (CheY-like receiver domain and HTH-type DNA-binding domain)
YP_001312089.1	TIGRFAM: ATPase P; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cno:NT01CX_2343 cation-transporting ATPase, E1-E2 family
YP_001312090.1	TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: cpr:CPR_1407 1-acyl-sn-glycerol-3-phosphate acyltransferase
YP_001312091.1	PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cpr:CPR_1389 ATP-dependent RNA helicase, DEAD/DEAH box family
YP_001312093.1	PFAM: sigma-54 factor, interaction domain-containing protein; PTS system fructose subfamily IIA component; PRD domain protein; SMART: ATPase AAA; KEGG: lwe:lwe0744 transcriptional regulator LevR family
YP_001312094.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: cac:CAC3562 HD superfamily hydrolase
YP_001312095.1	PFAM: nitrogen regulatory protein P-II; KEGG: chy:CHY_0072 nitrogen regulatory protein P-II
YP_001312096.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: llm:llmg_0910 ammonium transporter AmtB
YP_001312097.1	PFAM: aminoglycoside phosphotransferase; KEGG: sus:Acid_2507 aminoglycoside phosphotransferase
YP_001312098.1	TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: cpr:CPR_1459 sulfate permease, SulP family
YP_001312099.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_001312100.1	PFAM: protein of unknown function DUF81; KEGG: tde:TDE0189 membrane protein
YP_001312101.1	with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate
YP_001312102.1	with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate
YP_001312103.1	PFAM:  RNA methylase; KEGG: btk:BT9727_0797 methyltransferase
YP_001312104.1	PFAM: Extracellular ligand-binding receptor; KEGG: gka:GK2980 branched chain amino acid ABC transporter (substrate-binding protein)
YP_001312105.1	PFAM: inner-membrane translocator; KEGG: ssa:SSA_1728 ABC transporter membrane-spanning permease-branched chain amino acid transport
YP_001312106.1	PFAM: inner-membrane translocator; KEGG: mta:Moth_2500 inner-membrane translocator
YP_001312107.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: chy:CHY_2229 high affinity branched-chain amino acid ABC transporter ATP-binding protein
YP_001312108.1	PFAM: ABC transporter; SMART: ATPase AAA; KEGG: swo:Swol_2552 branched-chain amino acid ABC transporter (ATP-binding protein)
YP_001312111.1	KEGG: cpf:CPF_1306 hypothetical protein
YP_001312112.1	pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient
YP_001312113.1	PFAM: Protein of unknown function CGGC region; KEGG: mmp:MMP0536 hypothetical protein
YP_001312114.1	KEGG: cth:Cthe_1430 hypothetical protein
YP_001312115.1	TIGRFAM:  transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ctc:CTC00575 conserved protein (RRF2 family protein)
YP_001312116.1	TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; KEGG: cac:CAC0116 carbone-monoxide dehydrogenase, beta chain
YP_001312117.1	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: ctc:CTC01386 flavoprotein
YP_001312118.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; Electron transfer flavoprotein, alpha subunit-like; KEGG: ctc:CTC01387 acyl-coA dehydrogenase
YP_001312119.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_001312120.1	TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cac:CAC3668 MDR-type permease
YP_001312121.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: maq:Maqu_2916 methyl-accepting chemotaxis sensory transducer
YP_001312122.1	PFAM: SEC-C motif domain protein; KEGG: cpr:CPR_2613 sec-C domain protein
YP_001312123.1	PFAM: beta-lactamase domain protein; KEGG: cpf:CPF_2932 metallo-beta-lactamase family protein
YP_001312124.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001312125.1	KEGG: cpe:CPE2607 hypothetical protein
YP_001312126.1	KEGG: cpr:CPR_2618 hypothetical protein
YP_001312127.1	PFAM: protein of unknown function DUF606; KEGG: cpf:CPF_2936 hypothetical protein
YP_001312128.1	PFAM: beta-lactamase domain protein; KEGG: bca:BCE_2277 hypothetical protein
YP_001312129.1	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: cpr:CPR_2620 subtilase family protein
YP_001312130.1	TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: cpr:CPR_2622 DNA replication protein DnaD
YP_001312131.1	acts to load the DnaB helicase onto the initiation site during DNA replication
YP_001312132.1	KEGG: cpe:CPE2614 hypothetical protein
YP_001312133.1	PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cpf:CPF_2952 conserved hypothetical protein TIGR00275
YP_001312134.1	PFAM: acyl-ACP thioesterase; KEGG: cno:NT01CX_0907 acyl-acyl carrier protein thioesterase
YP_001312135.1	KEGG: cpr:CPR_2639 hypothetical protein
YP_001312136.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_001312137.1	PFAM: UBA/THIF-type NAD/FAD binding protein; malic protein domain protein; malic protein, NAD-binding; KEGG: chy:CHY_1369 NAD-dependent malic enzyme
YP_001312138.1	KEGG: cpe:CPE1522 hypothetical protein
YP_001312139.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_001312141.1	unwinds double stranded DNA
YP_001312142.1	TIGRFAM: Sporulation protease LonC; PFAM: magnesium chelatase, ChlI subunit; ATPase AAA, central domain protein; peptidase S16, lon domain protein; SMART: ATPase AAA; KEGG: cpr:CPR_2649 ATP-dependent protease
YP_001312143.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_001312144.1	PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: cpr:CPR_2651 DHH family protein
YP_001312145.1	KEGG: cno:NT01CX_0886 hypothetical protein
YP_001312146.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_001312147.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cac:CAC3723 single strand DNA binding protein, SSB
YP_001312148.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_001312149.1	PFAM: protein of unknown function DUF951; KEGG: cno:NT01CX_0882 hypothetical protein
YP_001312150.1	PFAM: MscS Mechanosensitive ion channel; KEGG: cpf:CPF_2980 mechanosensitive ion channel family protein
YP_001312151.1	KEGG: cpf:CPF_2981 hypothetical protein
YP_001312152.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cno:NT01CX_0881 LysE type translocator
YP_001312153.1	TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; KEGG: cpf:CPF_2983 cysteine desulfurase family protein
YP_001312154.1	PFAM: protein of unknown function DUF1256; KEGG: cpr:CPR_2663  sporulation protein YyaC
YP_001312155.1	KEGG: cpf:CPF_2986 hypothetical protein
YP_001312156.1	TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cno:NT01CX_0878 stage 0 sporulation protein J
YP_001312157.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: cpr:CPR_2666 sporulation initiation inhibitor protein soj
YP_001312158.1	TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cno:NT01CX_0876 spoOJ protein
YP_001312159.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_001312160.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_001312161.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_001312162.1	PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: cpe:CPE2656 SpoIIIJ-associated protein
YP_001312163.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_001312164.1	PFAM: protein of unknown function DUF37; KEGG: cpr:CPR_2672 conserved hypothetical protein TIGR00278
YP_001312165.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_001312166.1	in Escherichia coli transcription of this gene is enhanced by polyamines