-- dump date 20140619_042848 -- class Genbank::CDS -- table cds_note -- id note YP_002802314.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_002802315.1 binds the polymerase to DNA and acts as a sliding clamp YP_002802316.1 identified by match to protein family HMM PF01479; match to protein family HMM TIGR02988 YP_002802317.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_002802319.1 negatively supercoils closed circular double-stranded DNA YP_002802320.1 negatively supercoils closed circular double-stranded DNA YP_002802322.1 identified by similarity to PDB:1J5Y_A; match to protein family HMM PF02829; match to protein family HMM PF08279 YP_002802323.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04015 YP_002802324.1 identified by match to protein family HMM PF03699 YP_002802325.1 identified by match to protein family HMM PF03734 YP_002802326.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_002802327.1 identified by match to protein family HMM PF07892 YP_002802328.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002802329.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_002802330.1 identified by match to protein family HMM PF03109 YP_002802332.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_002802333.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine YP_002802334.1 identified by match to protein family HMM PF00383 YP_002802335.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_002802336.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_002802337.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002802339.1 identified by similarity to SP:P24282; match to protein family HMM PF07441; match to protein family HMM TIGR02862 YP_002802340.1 Regulatory factor involved in maltose metabolism YP_002802341.1 identified by match to protein family HMM PF00293 YP_002802343.1 identified by match to protein family HMM PF00037 YP_002802345.1 identified by match to protein family HMM PF00899 YP_002802346.1 identified by match to protein family HMM PF07690 YP_002802347.1 identified by match to protein family HMM PF00583 YP_002802348.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002802350.1 identified by match to protein family HMM PF03167 YP_002802351.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002802353.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002802355.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002802358.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002802359.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002802360.1 identified by glimmer; putative YP_002802361.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002802363.1 identified by match to protein family HMM PF00639 YP_002802364.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_002802365.1 identified by match to protein family HMM PF02016 YP_002802366.1 identified by match to protein family HMM PF01544 YP_002802370.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711 YP_002802372.1 identified by match to protein family HMM PF06153 YP_002802373.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_002802374.1 identified by match to protein family HMM PF04468 YP_002802376.1 identified by match to protein family HMM PF00037 YP_002802378.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_002802379.1 identified by match to protein family HMM PF00877 YP_002802380.1 identified by match to protein family HMM PF08876 YP_002802381.1 identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078 YP_002802382.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_002802383.1 identified by glimmer; putative YP_002802384.1 identified by match to protein family HMM PF01522 YP_002802386.1 identified by similarity to SP:P35157; match to protein family HMM PF07670 YP_002802387.1 identified by similarity to SP:P35158; match to protein family HMM PF07670 YP_002802388.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002802389.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_002802390.1 identified by match to protein family HMM PF01047 YP_002802391.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002802392.1 identified by match to protein family HMM PF04286 YP_002802393.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_002802394.1 identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501 YP_002802395.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334 YP_002802396.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002802400.1 identified by match to protein family HMM TIGR01730 YP_002802401.1 identified by match to protein family HMM PF00005 YP_002802402.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02687 YP_002802405.1 identified by glimmer; putative YP_002802406.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002802407.1 identified by match to protein family HMM PF02308 YP_002802408.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002802409.1 identified by match to protein family HMM TIGR02491 YP_002802411.1 identified by match to protein family HMM PF03551 YP_002802412.1 identified by similarity to PDB:1VJN_A YP_002802413.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_002802414.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002802416.1 identified by match to protein family HMM PF00483 YP_002802417.1 identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299 YP_002802418.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268 YP_002802420.1 identified by match to protein family HMM PF04055 YP_002802421.1 identified by similarity to SP:P94528; match to protein family HMM PF01547 YP_002802422.1 identified by similarity to GB:BAA07751.1; match to protein family HMM PF00534 YP_002802423.1 identified by match to protein family HMM TIGR02906 YP_002802424.1 identified by glimmer; putative YP_002802426.1 identified by match to protein family HMM TIGR02906 YP_002802427.1 identified by match to protein family HMM PF00534 YP_002802428.1 identified by similarity to SP:P46914; match to protein family HMM TIGR02906 YP_002802429.1 identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855 YP_002802430.1 identified by match to protein family HMM PF06257 YP_002802431.1 identified by match to protein family HMM PF01476 YP_002802433.1 identified by match to protein family HMM PF03575; match to protein family HMM TIGR02069 YP_002802434.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_002802435.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_002802436.1 identified by glimmer; putative YP_002802437.1 identified by match to protein family HMM PF03323 YP_002802438.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002802439.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002802440.1 identified by match to protein family HMM PF09551; match to protein family HMM TIGR02837 YP_002802441.1 identified by match to protein family HMM PF04101; match to protein family HMM PF06925 YP_002802442.1 identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889 YP_002802443.1 identified by match to protein family HMM PF02568 YP_002802444.1 identified by match to protein family HMM PF09148 YP_002802446.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002802448.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002802449.1 identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105 YP_002802450.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_002802451.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07136 YP_002802452.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03534 YP_002802453.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002802455.1 identified by match to protein family HMM PF02535 YP_002802456.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_002802457.1 identified by match to protein family HMM PF01451 YP_002802458.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_002802459.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002802461.1 identified by match to protein family HMM PF00383 YP_002802462.1 identified by similarity to SP:O34753; match to protein family HMM PF00953 YP_002802463.1 identified by similarity to SP:P39131; match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_002802464.1 identified by similarity to GB:AAK72436.1 YP_002802465.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002802466.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_002802467.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel YP_002802468.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_002802469.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002802470.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002802471.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002802472.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_002802474.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002802475.1 identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870 YP_002802476.1 identified by match to protein family HMM PF01551 YP_002802477.1 identified by similarity to SP:P15281; match to protein family HMM TIGR02844 YP_002802478.1 identified by similarity to SP:P39751; match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904 YP_002802479.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_002802480.1 identified by match to protein family HMM PF01171 YP_002802481.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002802482.1 identified by match to protein family HMM TIGR01448 YP_002802484.1 identified by match to protein family HMM PF00156 YP_002802485.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_002802486.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002802487.1 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA YP_002802488.1 identified by match to protein family HMM PF04389 YP_002802489.1 identified by match to protein family HMM PF00575; match to protein family HMM PF09371 YP_002802493.1 identified by match to protein family HMM PF00149 YP_002802494.1 identified by match to protein family HMM PF01022 YP_002802495.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF01206; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_002802497.1 identified by match to protein family HMM PF04607 YP_002802498.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002802499.1 identified by match to protein family HMM PF00581 YP_002802501.1 identified by match to protein family HMM PF00226; match to protein family HMM PF07719 YP_002802503.1 identified by match to protein family HMM PF01928 YP_002802505.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859 YP_002802507.1 identified by match to protein family HMM PF04239 YP_002802508.1 identified by similarity to SP:O32033; match to protein family HMM PF00485 YP_002802509.1 identified by glimmer; putative YP_002802510.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_002802511.1 identified by match to protein family HMM PF00571 YP_002802512.1 similar to YegS from E. coli YP_002802514.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08497 YP_002802515.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03448; match to protein family HMM PF05239 YP_002802516.1 identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869 YP_002802517.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_002802518.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_002802519.1 identified by match to protein family HMM PF08331 YP_002802520.1 identified by similarity to GB:AAC46006.1; match to protein family HMM PF01553 YP_002802521.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_002802522.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949 YP_002802523.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00177; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_002802525.1 identified by match to protein family HMM PF05343 YP_002802526.1 identified by match to protein family HMM PF04294 YP_002802527.1 identified by match to protein family HMM PF04294; match to protein family HMM PF07501 YP_002802528.1 identified by similarity to SP:P37956; match to protein family HMM PF04055 YP_002802529.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_002802530.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002802531.1 identified by match to protein family HMM PF02608 YP_002802532.1 identified by match to protein family HMM PF00005 YP_002802533.1 identified by match to protein family HMM PF02653 YP_002802534.1 identified by match to protein family HMM PF02653 YP_002802535.1 identified by match to protein family HMM PF01522 YP_002802536.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_002802537.1 identified by similarity to SP:O32253; match to protein family HMM PF04198 YP_002802538.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002802539.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002802540.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002802541.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_002802542.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002802543.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_002802544.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_002802545.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_002802546.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_002802547.1 identified by match to protein family HMM PF00375 YP_002802549.1 identified by match to protein family HMM PF01565; match to protein family HMM PF08031 YP_002802550.1 identified by match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002802551.1 identified by match to protein family HMM PF00027 YP_002802553.1 identified by similarity to GB:CAB71551.1; match to protein family HMM PF00282 YP_002802554.1 identified by similarity to SP:P81701; match to protein family HMM PF01569 YP_002802555.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002802556.1 identified by match to protein family HMM PF00005 YP_002802558.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002802559.1 identified by match to protein family HMM PF07883 YP_002802561.1 identified by similarity to SP:P25737; match to protein family HMM PF00324 YP_002802562.1 identified by match to protein family HMM PF00753 YP_002802563.1 identified by match to protein family HMM PF00583 YP_002802564.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002802565.1 identified by match to protein family HMM PF00583 YP_002802566.1 identified by match to protein family HMM PF01872 YP_002802567.1 3'-5' exonuclease of DNA polymerase III YP_002802568.1 identified by glimmer; putative YP_002802569.1 identified by match to protein family HMM PF00857 YP_002802571.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839 YP_002802572.1 identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845 YP_002802573.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838 YP_002802574.1 identified by match to protein family HMM PF04239; match to protein family HMM PF07870 YP_002802575.1 identified by match to protein family HMM PF07870 YP_002802576.1 identified by match to protein family HMM PF07870 YP_002802577.1 identified by glimmer; putative YP_002802578.1 identified by match to protein family HMM PF02683 YP_002802579.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002802580.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002802581.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002802582.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01565 YP_002802583.1 identified by match to protein family HMM PF02056 YP_002802584.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378 YP_002802585.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002802586.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002802587.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_002802588.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002802589.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002802590.1 identified by match to protein family HMM PF00005 YP_002802591.1 identified by match to protein family HMM PF02687 YP_002802592.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_002802593.1 identified by similarity to SP:P54716; match to protein family HMM PF02056 YP_002802594.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_002802595.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002802597.1 identified by match to protein family HMM PF00313 YP_002802598.1 identified by match to protein family HMM PF06210 YP_002802599.1 identified by match to protein family HMM PF02082 YP_002802600.1 identified by match to protein family HMM PF01323 YP_002802602.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002802603.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_002802604.1 identified by similarity to SP:P54716; match to protein family HMM PF02056 YP_002802605.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_002802606.1 identified by match to protein family HMM PF00920 YP_002802607.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_002802608.1 identified by match to protein family HMM PF00294 YP_002802609.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178 YP_002802610.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002802611.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002802612.1 identified by match to protein family HMM PF00535 YP_002802613.1 identified by match to protein family HMM PF04138 YP_002802614.1 identified by match to protein family HMM PF02366 YP_002802615.1 identified by match to protein family HMM PF00165 YP_002802616.1 identified by match to protein family HMM PF01497 YP_002802617.1 identified by match to protein family HMM PF00005 YP_002802618.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002802619.1 identified by glimmer; putative YP_002802620.1 identified by match to protein family HMM PF01648; match to protein family HMM TIGR00556 YP_002802621.1 identified by match to protein family HMM PF00975 YP_002802622.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002802623.1 identified by similarity to GB:AAA58950.1 YP_002802624.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_002802625.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_002802626.1 identified by match to protein family HMM PF00144 YP_002802627.1 identified by similarity to SP:P33951 YP_002802628.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_002802629.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_002802630.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_002802631.1 identified by match to protein family HMM PF01554 YP_002802632.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00165 YP_002802633.1 identified by match to protein family HMM PF01497 YP_002802634.1 identified by match to protein family HMM PF01032 YP_002802635.1 identified by match to protein family HMM PF01032 YP_002802636.1 identified by match to protein family HMM PF00005 YP_002802637.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002802638.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_002802639.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_002802640.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002802641.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002802642.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002802643.1 identified by match to protein family HMM PF00005 YP_002802644.1 identified by match to protein family HMM PF02687 YP_002802645.1 identified by glimmer; putative YP_002802646.1 identified by match to protein family HMM PF03788 YP_002802647.1 identified by match to protein family HMM PF04172 YP_002802649.1 identified by match to protein family HMM PF04055 YP_002802650.1 identified by match to protein family HMM PF08903 YP_002802653.1 identified by match to protein family HMM PF04647 YP_002802655.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00254 YP_002802656.1 identified by match to protein family HMM PF00583 YP_002802658.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_002802660.1 identified by match to protein family HMM PF04647 YP_002802661.1 identified by glimmer; putative YP_002802662.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_002802663.1 identified by match to protein family HMM PF01171 YP_002802664.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002802665.1 identified by match to protein family HMM PF00324 YP_002802666.1 identified by match to protein family HMM PF00557 YP_002802667.1 identified by match to protein family HMM PF00171; match to protein family HMM PF00465 YP_002802672.1 identified by match to protein family HMM PF01569 YP_002802673.1 identified by match to protein family HMM PF01522 YP_002802674.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002802675.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002802677.1 identified by match to protein family HMM PF06962 YP_002802678.1 identified by match to protein family HMM PF09335 YP_002802679.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM PF05228; match to protein family HMM TIGR00254 YP_002802681.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002802682.1 identified by match to protein family HMM PF01966 YP_002802683.1 identified by match to protein family HMM PF00999 YP_002802684.1 identified by match to protein family HMM PF00266 YP_002802685.1 identified by match to protein family HMM PF03601 YP_002802687.1 identified by match to protein family HMM PF00486 YP_002802688.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002802689.1 identified by match to protein family HMM PF00474 YP_002802690.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945 YP_002802691.1 identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946 YP_002802692.1 identified by match to protein family HMM PF04205; match to protein family HMM TIGR01947 YP_002802693.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_002802694.1 identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943 YP_002802695.1 involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate YP_002802696.1 identified by match to protein family HMM PF04122 YP_002802697.1 identified by match to protein family HMM PF07456 YP_002802698.1 identified by match to protein family HMM PF07009 YP_002802699.1 identified by match to protein family HMM PF02424 YP_002802700.1 identified by match to protein family HMM PF04122 YP_002802701.1 identified by match to protein family HMM PF04122; match to protein family HMM PF04151 YP_002802703.1 identified by match to protein family HMM PF04122 YP_002802704.1 identified by glimmer; putative YP_002802705.1 identified by match to protein family HMM PF04122 YP_002802709.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002802710.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002802711.1 identified by match to protein family HMM PF00005 YP_002802713.1 identified by match to protein family HMM PF00324 YP_002802714.1 identified by match to protein family HMM PF09580; match to protein family HMM TIGR02898 YP_002802716.1 identified by match to protein family HMM PF01863 YP_002802717.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_002802718.1 identified by match to protein family HMM PF02659 YP_002802719.1 identified by match to protein family HMM PF01475 YP_002802721.1 identified by match to protein family HMM PF01966 YP_002802722.1 identified by match to protein family HMM PF01694 YP_002802723.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002802724.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_002802725.1 identified by match to protein family HMM PF06803 YP_002802726.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_002802727.1 identified by glimmer; putative YP_002802728.1 identified by match to protein family HMM PF00515; match to protein family HMM PF01381 YP_002802729.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002802731.1 identified by match to protein family HMM PF01965 YP_002802734.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346 YP_002802735.1 identified by match to protein family HMM PF07685 YP_002802736.1 identified by match to protein family HMM PF08245; match to protein family HMM PF08353 YP_002802737.1 identified by match to protein family HMM PF01238 YP_002802739.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002802740.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002802742.1 identified by match to protein family HMM PF00753 YP_002802743.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_002802744.1 identified by match to protein family HMM PF00682 YP_002802745.1 Catalyzes the conversion of citrate to isocitrate YP_002802746.1 identified by match to protein family HMM PF00180 YP_002802747.1 identified by match to protein family HMM PF00005 YP_002802748.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03606 YP_002802749.1 identified by match to protein family HMM PF04070 YP_002802750.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_002802751.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_002802752.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_002802753.1 identified by match to protein family HMM TIGR02773 YP_002802755.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002802757.1 identified by match to protein family HMM PF00440 YP_002802758.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_002802759.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002802760.1 identified by match to protein family HMM PF01155 YP_002802762.1 identified by glimmer; putative YP_002802763.1 identified by similarity to SP:P23478; match to protein family HMM PF00580; match to protein family HMM TIGR02785 YP_002802764.1 identified by match to protein family HMM PF00015 YP_002802765.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_002802766.1 identified by match to protein family HMM PF01734 YP_002802767.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002802768.1 identified by match to protein family HMM PF00903 YP_002802769.1 identified by match to protein family HMM PF00583 YP_002802771.1 identified by match to protein family HMM PF04122 YP_002802772.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002802773.1 identified by match to protein family HMM PF00497 YP_002802774.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002802775.1 identified by match to protein family HMM PF00563; match to protein family HMM PF08668 YP_002802776.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_002802777.1 identified by match to protein family HMM PF02110; match to protein family HMM TIGR00694 YP_002802778.1 identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097 YP_002802779.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002802780.1 identified by match to protein family HMM PF01094 YP_002802781.1 identified by match to protein family HMM PF02653 YP_002802782.1 identified by match to protein family HMM PF02653 YP_002802783.1 identified by match to protein family HMM PF00005 YP_002802784.1 identified by match to protein family HMM PF00005 YP_002802785.1 identified by match to protein family HMM PF02596 YP_002802786.1 identified by match to protein family HMM PF06738 YP_002802788.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002802789.1 identified by match to protein family HMM PF04011 YP_002802790.1 identified by match to protein family HMM PF04536 YP_002802791.1 identified by match to protein family HMM PF04536 YP_002802792.1 identified by match to protein family HMM PF00293 YP_002802793.1 identified by glimmer; putative YP_002802795.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002802797.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002802798.1 identified by glimmer; putative YP_002802799.1 identified by similarity to SP:P13457; match to protein family HMM PF00149; match to protein family HMM TIGR00619 YP_002802800.1 identified by similarity to SP:P13458; match to protein family HMM PF02463 YP_002802801.1 identified by match to protein family HMM PF00293 YP_002802802.1 identified by match to protein family HMM PF02588 YP_002802803.1 identified by match to protein family HMM PF07561 YP_002802804.1 identified by match to protein family HMM PF01022 YP_002802805.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_002802806.1 identified by match to protein family HMM PF00877; match to protein family HMM PF01471 YP_002802807.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002802812.1 identified by match to protein family HMM PF02562 YP_002802816.1 identified by similarity to GB:AAN16972.1; match to protein family HMM TIGR03605 YP_002802817.1 identified by match to protein family HMM TIGR03603 YP_002802818.1 identified by match to protein family HMM PF02624; match to protein family HMM TIGR03604 YP_002802819.1 identified by match to protein family HMM PF02517 YP_002802821.1 identified by similarity to GB:AAN16977.1; match to protein family HMM PF00005 YP_002802822.1 identified by match to protein family HMM PF01061 YP_002802823.1 identified by match to protein family HMM PF01061 YP_002802824.1 identified by match to protein family HMM PF02163 YP_002802825.1 identified by match to protein family HMM PF07730 YP_002802826.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_002802827.1 identified by match to protein family HMM PF00005 YP_002802828.1 identified by match to protein family HMM PF01061 YP_002802829.1 identified by match to protein family HMM PF01061 YP_002802830.1 identified by glimmer; putative YP_002802831.1 identified by match to protein family HMM PF02040; match to protein family HMM PF03600 YP_002802833.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_002802835.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_002802836.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002802837.1 identified by match to protein family HMM PF00072 YP_002802838.1 identified by match to protein family HMM PF00877; match to protein family HMM PF05257; match to protein family HMM PF06347; match to protein family HMM PF08239 YP_002802839.1 identified by match to protein family HMM PF00561 YP_002802840.1 identified by match to protein family HMM PF00072 YP_002802841.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_002802842.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002802843.1 identified by match to protein family HMM PF00072 YP_002802844.1 identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 YP_002802845.1 identified by match to protein family HMM PF06733 YP_002802847.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02080 YP_002802848.1 identified by match to protein family HMM PF01262 YP_002802849.1 identified by match to protein family HMM PF06874 YP_002802850.1 identified by glimmer; putative YP_002802851.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_002802852.1 identified by glimmer; putative YP_002802853.1 identified by glimmer; putative YP_002802854.1 identified by match to protein family HMM PF02777 YP_002802855.1 identified by match to protein family HMM PF00753 YP_002802856.1 identified by match to protein family HMM PF04055 YP_002802857.1 identified by match to protein family HMM PF04055 YP_002802858.1 identified by glimmer; putative YP_002802859.1 identified by glimmer; putative YP_002802861.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002802862.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002802863.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002802864.1 identified by match to protein family HMM PF00005 YP_002802865.1 identified by match to protein family HMM PF02687 YP_002802869.1 identified by match to protein family HMM PF01037 YP_002802871.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_002802872.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_002802873.1 identified by match to protein family HMM PF00132 YP_002802874.1 identified by match to protein family HMM PF00753 YP_002802875.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517 YP_002802876.1 identified by match to protein family HMM PF02417 YP_002802877.1 identified by match to protein family HMM PF02417 YP_002802878.1 identified by match to protein family HMM PF02452 YP_002802879.1 identified by match to protein family HMM PF03885 YP_002802880.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002802881.1 identified by match to protein family HMM PF01957 YP_002802882.1 identified by match to protein family HMM PF01145 YP_002802884.1 identified by match to protein family HMM PF00557; match to protein family HMM PF05195 YP_002802886.1 identified by match to protein family HMM PF01381 YP_002802887.1 identified by match to protein family HMM PF00583 YP_002802888.1 identified by match to protein family HMM PF04324 YP_002802889.1 identified by glimmer; putative YP_002802890.1 identified by glimmer; putative YP_002802892.1 identified by glimmer; putative YP_002802893.1 identified by match to protein family HMM PF02554 YP_002802895.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002802896.1 identified by match to protein family HMM PF00005 YP_002802897.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220 YP_002802898.1 identified by match to protein family HMM PF09515; match to protein family HMM TIGR02357 YP_002802900.1 identified by match to protein family HMM PF02810 YP_002802901.1 identified by match to protein family HMM PF00392 YP_002802902.1 identified by match to protein family HMM PF00005 YP_002802904.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187 YP_002802905.1 identified by similarity to SP:P0AFK4; match to protein family HMM PF00528 YP_002802906.1 identified by similarity to SP:P0AFK6; similarity to SP:P0AFK9; match to protein family HMM PF00528; match to protein family HMM PF01547 YP_002802907.1 identified by match to protein family HMM PF00165 YP_002802908.1 identified by glimmer; putative YP_002802909.1 identified by similarity to SP:P24943; match to protein family HMM PF00375 YP_002802910.1 identified by glimmer; putative YP_002802911.1 identified by glimmer; putative YP_002802912.1 identified by glimmer; putative YP_002802913.1 identified by match to protein family HMM PF01471; match to protein family HMM PF08924 YP_002802914.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002802916.1 identified by match to protein family HMM PF02517 YP_002802917.1 identified by match to protein family HMM PF00805 YP_002802919.1 identified by match to protein family HMM PF01381 YP_002802921.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002802922.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002802923.1 identified by glimmer; putative YP_002802924.1 identified by glimmer; putative YP_002802925.1 identified by glimmer; putative YP_002802927.1 identified by match to protein family HMM PF04055 YP_002802928.1 identified by glimmer; putative YP_002802930.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463 YP_002802932.1 identified by match to protein family HMM PF00583 YP_002802933.1 identified by match to protein family HMM PF02687 YP_002802934.1 identified by match to protein family HMM PF00005 YP_002802936.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002802939.1 identified by match to protein family HMM PF00884 YP_002802940.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_002802941.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804 YP_002802942.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002802943.1 identified by match to protein family HMM PF04397 YP_002802945.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002802946.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002802947.1 identified by match to protein family HMM PF02517 YP_002802948.1 identified by match to protein family HMM PF01381 YP_002802950.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002802951.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002802952.1 identified by glimmer; putative YP_002802953.1 identified by match to protein family HMM PF02557 YP_002802954.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002802955.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002802957.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08664 YP_002802958.1 identified by match to protein family HMM PF02518 YP_002802959.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_002802960.1 identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002802961.1 identified by glimmer; putative YP_002802962.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002802963.1 identified by match to protein family HMM PF00302 YP_002802964.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00440 YP_002802965.1 identified by match to protein family HMM PF00583 YP_002802966.1 identified by similarity to SP:P37584; match to protein family HMM PF01588; match to protein family HMM TIGR02222 YP_002802967.1 identified by match to protein family HMM PF00165 YP_002802968.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002802969.1 identified by match to protein family HMM TIGR00277 YP_002802970.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF04397 YP_002802971.1 identified by match to protein family HMM PF00005 YP_002802972.1 identified by glimmer; putative YP_002802973.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_002802974.1 identified by match to protein family HMM PF00903 YP_002802975.1 identified by match to protein family HMM PF00488 YP_002802976.1 identified by similarity to GB:CAL82185.1 YP_002802977.1 identified by similarity to GB:CAA50578.1; match to protein family HMM PF01243 YP_002802978.1 identified by match to protein family HMM PF04304 YP_002802980.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01243 YP_002802982.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002802984.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002802985.1 identified by match to protein family HMM PF02915 YP_002802986.1 identified by match to protein family HMM PF01047 YP_002802987.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002802989.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002802990.1 identified by match to protein family HMM PF08011 YP_002802991.1 identified by glimmer; putative YP_002802992.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002802993.1 identified by similarity to SP:P0AFY2; match to protein family HMM PF02698 YP_002802994.1 identified by match to protein family HMM PF00293 YP_002802996.1 identified by glimmer; putative YP_002802997.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002802998.1 identified by glimmer; putative YP_002803000.1 identified by similarity to SP:P39805; match to protein family HMM PF00874; match to protein family HMM PF03123 YP_002803001.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995 YP_002803002.1 identified by match to protein family HMM PF02811 YP_002803003.1 identified by glimmer; putative YP_002803004.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_002803005.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_002803006.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04405 YP_002803007.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04282 YP_002803008.1 identified by glimmer; putative YP_002803009.1 identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210 YP_002803013.1 identified by match to protein family HMM PF00753 YP_002803014.1 identified by match to protein family HMM PF02653 YP_002803015.1 identified by match to protein family HMM PF00005 YP_002803016.1 identified by match to protein family HMM PF04392 YP_002803017.1 identified by glimmer; putative YP_002803018.1 identified by glimmer; putative YP_002803020.1 identified by glimmer; putative YP_002803021.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002803022.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01207 YP_002803023.1 identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462 YP_002803025.1 identified by match to protein family HMM PF02384 YP_002803026.1 identified by match to protein family HMM PF01420 YP_002803028.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851 YP_002803029.1 identified by match to protein family HMM PF04994 YP_002803030.1 identified by match to protein family HMM PF06445 YP_002803031.1 identified by match to protein family HMM PF00144 YP_002803032.1 identified by match to protein family HMM PF03965 YP_002803033.1 identified by match to protein family HMM PF00905; match to protein family HMM PF05569 YP_002803035.1 identified by match to protein family HMM PF00165 YP_002803036.1 identified by match to protein family HMM PF01497 YP_002803037.1 identified by similarity to SP:P49936; match to protein family HMM PF01032 YP_002803038.1 identified by similarity to SP:P49937; match to protein family HMM PF01032 YP_002803039.1 identified by similarity to SP:P49938; match to protein family HMM PF00005 YP_002803040.1 identified by match to protein family HMM PF00142 YP_002803041.1 identified by glimmer; putative YP_002803042.1 identified by glimmer; putative YP_002803043.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002803044.1 identified by glimmer; putative YP_002803046.1 identified by glimmer; putative YP_002803047.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_002803048.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_002803049.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_002803050.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_002803051.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_002803052.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_002803054.1 identified by match to protein family HMM PF00583 YP_002803055.1 identified by glimmer; putative YP_002803057.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002803058.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002803059.1 identified by match to protein family HMM PF00005 YP_002803060.1 identified by match to protein family HMM PF02687 YP_002803061.1 identified by match to protein family HMM PF01047 YP_002803062.1 identified by match to protein family HMM PF03358 YP_002803064.1 identified by match to protein family HMM PF00376 YP_002803065.1 identified by match to protein family HMM PF00005 YP_002803066.1 identified by match to protein family HMM PF01061 YP_002803067.1 identified by match to protein family HMM PF00892 YP_002803068.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002803070.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00583 YP_002803072.1 identified by match to protein family HMM PF00165 YP_002803075.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002803077.1 identified by glimmer; putative YP_002803078.1 identified by match to protein family HMM PF00903 YP_002803079.1 identified by match to protein family HMM PF00376 YP_002803080.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002803081.1 identified by match to protein family HMM PF00005 YP_002803082.1 identified by similarity to GB:BAE82969.1 YP_002803083.1 identified by match to protein family HMM PF07505 YP_002803084.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002803086.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545 YP_002803087.1 identified by match to protein family HMM PF00015 YP_002803090.1 identified by match to protein family HMM PF00005 YP_002803091.1 identified by match to protein family HMM PF01965 YP_002803092.1 identified by similarity to GB:ABD14706.1 YP_002803093.1 identified by glimmer; putative YP_002803094.1 identified by glimmer; putative YP_002803095.1 identified by glimmer; putative YP_002803096.1 identified by match to protein family HMM PF00291 YP_002803097.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_002803098.1 identified by match to protein family HMM PF01053; match to protein family HMM PF01212 YP_002803099.1 identified by match to protein family HMM PF01209; match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002803100.1 identified by glimmer; putative YP_002803101.1 identified by match to protein family HMM PF00704 YP_002803102.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002803104.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002803105.1 identified by match to protein family HMM PF00403 YP_002803107.1 identified by match to protein family HMM PF06172 YP_002803108.1 identified by glimmer; putative YP_002803109.1 identified by match to protein family HMM PF01381 YP_002803110.1 identified by match to protein family HMM PF01381 YP_002803111.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002803112.1 identified by match to protein family HMM TIGR02937 YP_002803113.1 identified by match to protein family HMM TIGR02436 YP_002803115.1 identified by glimmer; putative YP_002803116.1 identified by glimmer; putative YP_002803119.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by similarity to SP:Q01257 YP_002803120.1 identified by glimmer; putative YP_002803124.1 identified by match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR03209 YP_002803125.1 identified by similarity to GB:ABC26000.1; match to protein family HMM PF06597 YP_002803126.1 identified by match to protein family HMM PF01742; match to protein family HMM PF07953; match to protein family HMM PF08470 YP_002803127.1 identified by similarity to SP:P10845; match to protein family HMM PF01742; match to protein family HMM PF07951; match to protein family HMM PF07952; match to protein family HMM PF07953 YP_002803128.1 identified by glimmer; putative YP_002803129.1 identified by match to protein family HMM PF01183; match to protein family HMM PF01471 YP_002803130.1 identified by glimmer; putative YP_002803131.1 identified by glimmer; putative YP_002803132.1 identified by glimmer; putative YP_002803133.1 identified by similarity to SP:Q01257; match to protein family HMM PF01451 YP_002803134.1 identified by match to protein family HMM PF09719; match to protein family HMM TIGR01909 YP_002803135.1 identified by similarity to SP:Q01256; match to protein family HMM PF01022 YP_002803136.1 identified by match to protein family HMM PF06953 YP_002803137.1 identified by similarity to SP:P08690; match to protein family HMM PF02374; match to protein family HMM TIGR00345 YP_002803138.1 identified by match to protein family HMM PF01451 YP_002803139.1 identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832 YP_002803141.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002803142.1 identified by glimmer; putative YP_002803143.1 identified by match to protein family HMM PF00300 YP_002803145.1 identified by match to protein family HMM PF00005 YP_002803148.1 identified by match to protein family HMM PF00303 YP_002803149.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002803150.1 identified by similarity to SP:P45741; match to protein family HMM PF01547 YP_002803151.1 identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097 YP_002803152.1 identified by glimmer; putative YP_002803153.1 identified by match to protein family HMM PF06695 YP_002803154.1 identified by match to protein family HMM PF00005 YP_002803156.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002803157.1 identified by match to protein family HMM PF00005 YP_002803159.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002803160.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002803163.1 identified by match to protein family HMM PF00005 YP_002803164.1 identified by match to protein family HMM PF02687 YP_002803165.1 identified by glimmer; putative YP_002803166.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002803167.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002803168.1 identified by match to protein family HMM PF06555 YP_002803169.1 identified by match to protein family HMM TIGR02861 YP_002803171.1 identified by glimmer; putative YP_002803172.1 identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 YP_002803173.1 identified by match to protein family HMM PF00581 YP_002803174.1 identified by glimmer; putative YP_002803175.1 identified by match to protein family HMM PF00144 YP_002803176.1 identified by match to protein family HMM PF01381 YP_002803177.1 identified by match to protein family HMM PF00589 YP_002803178.1 identified by match to protein family HMM PF00903 YP_002803180.1 identified by glimmer; putative YP_002803181.1 identified by match to protein family HMM PF01979 YP_002803182.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002803183.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002803184.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00496 YP_002803185.1 identified by match to protein family HMM PF04023 YP_002803186.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231 YP_002803187.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670 YP_002803188.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162 YP_002803189.1 identified by match to protein family HMM PF04294; match to protein family HMM PF07501 YP_002803190.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_002803194.1 identified by match to protein family HMM PF07875 YP_002803196.1 identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367 YP_002803197.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_002803199.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_002803200.1 identified by match to protein family HMM PF00011 YP_002803201.1 identified by match to protein family HMM PF00376; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002803202.1 identified by match to protein family HMM PF01041 YP_002803203.1 identified by match to protein family HMM PF01041 YP_002803205.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02954 YP_002803206.1 identified by glimmer; putative YP_002803208.1 identified by similarity to GB:CAA50581.1; match to protein family HMM PF01243 YP_002803210.1 identified by match to protein family HMM PF00005 YP_002803211.1 identified by match to protein family HMM PF01381 YP_002803213.1 identified by match to protein family HMM PF00561 YP_002803214.1 identified by match to protein family HMM PF00805 YP_002803215.1 identified by match to protein family HMM PF02525 YP_002803216.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002803218.1 identified by match to protein family HMM PF00376 YP_002803219.1 identified by match to protein family HMM PF00583 YP_002803220.1 identified by match to protein family HMM PF04229 YP_002803221.1 identified by match to protein family HMM PF00583 YP_002803222.1 identified by match to protein family HMM PF02678 YP_002803223.1 identified by match to protein family HMM PF01638 YP_002803224.1 identified by match to protein family HMM PF00881 YP_002803225.1 identified by similarity to GB:AAF40217.1 YP_002803226.1 identified by match to protein family HMM PF00190; match to protein family HMM PF07883; match to protein family HMM TIGR03404 YP_002803227.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_002803228.1 identified by match to protein family HMM PF04657 YP_002803229.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002803230.1 identified by match to protein family HMM PF00583 YP_002803232.1 identified by match to protein family HMM PF06738 YP_002803233.1 identified by match to protein family HMM PF01327 YP_002803234.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002803235.1 identified by match to protein family HMM PF00881 YP_002803237.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002803238.1 identified by glimmer; putative YP_002803240.1 identified by match to protein family HMM PF00165 YP_002803241.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995 YP_002803242.1 identified by match to protein family HMM PF00232 YP_002803243.1 identified by glimmer; putative YP_002803244.1 identified by match to protein family HMM PF00953 YP_002803245.1 identified by glimmer; putative YP_002803246.1 identified by match to protein family HMM PF01381 YP_002803247.1 identified by match to protein family HMM PF00132 YP_002803248.1 identified by match to protein family HMM PF00165 YP_002803249.1 identified by match to protein family HMM PF04371 YP_002803250.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002803251.1 identified by glimmer; putative YP_002803252.1 identified by glimmer; putative YP_002803254.1 identified by match to protein family HMM PF09557; match to protein family HMM TIGR02271 YP_002803255.1 identified by match to protein family HMM PF09557; match to protein family HMM TIGR02271 YP_002803256.1 identified by match to protein family HMM PF04229 YP_002803257.1 identified by match to protein family HMM PF03734 YP_002803259.1 identified by glimmer; putative YP_002803260.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative YP_002803261.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002803262.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002803263.1 identified by glimmer; putative YP_002803265.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02687 YP_002803266.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002803267.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002803268.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002803269.1 identified by match to protein family HMM PF02632 YP_002803270.1 identified by match to protein family HMM PF04199 YP_002803271.1 identified by match to protein family HMM PF00583 YP_002803272.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR00498 YP_002803273.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP YP_002803275.1 identified by similarity to SP:P0A4T9; match to protein family HMM PF00376; match to protein family HMM PF07739 YP_002803277.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_002803278.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_002803279.1 identified by match to protein family HMM PF00155 YP_002803280.1 catalyzes the ATP-dependent transport of cobalt YP_002803281.1 identified by match to protein family HMM PF02553; match to protein family HMM TIGR01165 YP_002803282.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454 YP_002803283.1 catalyzes the formation of siroheme from precorrin-2 YP_002803284.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_002803285.1 identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469 YP_002803287.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_002803288.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_002803289.1 catalyzes the interconversion of precorrin-8X and cobyrinic acid YP_002803290.1 identified by match to protein family HMM PF00583 YP_002803291.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002803292.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002803293.1 identified by match to protein family HMM PF00753 YP_002803295.1 identified by match to protein family HMM PF00583 YP_002803296.1 identified by match to protein family HMM PF02661 YP_002803297.1 identified by match to protein family HMM PF00881 YP_002803299.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF04229 YP_002803300.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_002803301.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467 YP_002803302.1 identified by glimmer; putative YP_002803304.1 identified by match to protein family HMM TIGR01444; match to protein family HMM TIGR02469 YP_002803309.1 identified by match to protein family HMM PF00583 YP_002803311.1 catalyzes the formation of precorrin-3A from precorrin-2 YP_002803312.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_002803313.1 identified by match to protein family HMM PF01890 YP_002803314.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466 YP_002803315.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_002803317.1 identified by match to protein family HMM PF01903; match to protein family HMM PF06180 YP_002803318.1 identified by match to protein family HMM PF00288 YP_002803319.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_002803320.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_002803321.1 identified by match to protein family HMM PF01226 YP_002803322.1 identified by match to protein family HMM TIGR02910 YP_002803323.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide YP_002803324.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912 YP_002803325.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_002803326.1 identified by glimmer; putative YP_002803328.1 identified by match to protein family HMM PF00005 YP_002803330.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002803331.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002803332.1 identified by match to protein family HMM PF00005 YP_002803333.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032; match to protein family HMM PF02653 YP_002803334.1 identified by match to protein family HMM PF01497 YP_002803336.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254 YP_002803339.1 identified by match to protein family HMM PF00126 YP_002803340.1 identified by match to protein family HMM PF00291 YP_002803341.1 identified by similarity to GB:CAA50581.1; match to protein family HMM PF01243 YP_002803342.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002803343.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_002803344.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_002803345.1 identified by match to protein family HMM PF00165 YP_002803346.1 identified by match to protein family HMM PF00583 YP_002803347.1 identified by match to protein family HMM PF00583 YP_002803348.1 identified by match to protein family HMM PF07081 YP_002803349.1 identified by glimmer; putative YP_002803350.1 identified by match to protein family HMM PF00248 YP_002803351.1 identified by match to protein family HMM PF04993 YP_002803352.1 identified by match to protein family HMM PF00583 YP_002803353.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002803354.1 identified by glimmer; putative YP_002803355.1 identified by match to protein family HMM PF00877 YP_002803356.1 catalyzes the formation of inosine from adenosine YP_002803357.1 identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_002803358.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_002803361.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_002803362.1 identified by match to protein family HMM PF02915 YP_002803363.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002803364.1 identified by match to protein family HMM PF00072 YP_002803365.1 identified by match to protein family HMM PF07656 YP_002803366.1 identified by glimmer; putative YP_002803368.1 identified by match to protein family HMM PF04055 YP_002803369.1 identified by match to protein family HMM PF00004 YP_002803370.1 identified by glimmer; putative YP_002803371.1 identified by match to protein family HMM PF02652; match to protein family HMM PF03553; match to protein family HMM TIGR00795 YP_002803373.1 identified by match to protein family HMM PF01012 YP_002803374.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_002803375.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_002803378.1 identified by match to protein family HMM PF01047 YP_002803379.1 identified by match to protein family HMM PF04199 YP_002803380.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002803381.1 identified by match to protein family HMM PF04199 YP_002803382.1 identified by match to protein family HMM PF01047 YP_002803383.1 identified by match to protein family HMM PF00376; match to protein family HMM PF06445 YP_002803384.1 identified by match to protein family HMM PF03483 YP_002803385.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002803387.1 identified by match to protein family HMM PF01066 YP_002803388.1 identified by match to protein family HMM PF00440 YP_002803390.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254 YP_002803391.1 identified by match to protein family HMM PF00027 YP_002803392.1 identified by match to protein family HMM PF01965 YP_002803393.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002803395.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF04023 YP_002803396.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to SP:P0AEL3; match to protein family HMM PF04023 YP_002803397.1 identified by similarity to SP:P33650; match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437 YP_002803398.1 identified by glimmer; putative YP_002803399.1 identified by match to protein family HMM PF00583 YP_002803400.1 identified by match to protein family HMM PF02557 YP_002803401.1 identified by match to protein family HMM TIGR03090 YP_002803402.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002803403.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002803405.1 identified by match to protein family HMM PF00067 YP_002803406.1 identified by match to protein family HMM PF00403; match to protein family HMM PF02683 YP_002803408.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002803409.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002803411.1 identified by match to protein family HMM PF00165 YP_002803412.1 identified by match to protein family HMM PF01032 YP_002803413.1 identified by match to protein family HMM PF01032 YP_002803414.1 identified by match to protein family HMM PF00005 YP_002803415.1 identified by match to protein family HMM PF01497 YP_002803416.1 identified by match to protein family HMM PF00165 YP_002803417.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002803418.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463 YP_002803420.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002803422.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_002803423.1 identified by similarity to GB:BAB16890.1; match to protein family HMM PF00041; match to protein family HMM PF00704 YP_002803424.1 identified by match to protein family HMM PF03190 YP_002803425.1 identified by match to protein family HMM PF06081 YP_002803427.1 identified by match to protein family HMM PF03551 YP_002803429.1 identified by match to protein family HMM PF02517 YP_002803430.1 identified by match to protein family HMM PF00753 YP_002803431.1 identified by match to protein family HMM PF04389 YP_002803432.1 identified by match to protein family HMM PF08239 YP_002803433.1 identified by match to protein family HMM PF00005 YP_002803435.1 identified by match to protein family HMM PF03960 YP_002803437.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_002803438.1 identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002803439.1 identified by match to protein family HMM PF07892 YP_002803440.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881 YP_002803441.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002803442.1 associated with arginine deiminase pathway genes; probably functions in arginine catabolism YP_002803443.1 identified by match to protein family HMM PF00571 YP_002803444.1 identified by glimmer; putative YP_002803445.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437 YP_002803446.1 identified by match to protein family HMM PF04023 YP_002803447.1 identified by match to protein family HMM PF07238 YP_002803448.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_002803449.1 identified by match to protein family HMM PF02839 YP_002803450.1 identified by match to protein family HMM PF00583 YP_002803451.1 identified by match to protein family HMM PF00005; match to protein family HMM PF09383 YP_002803452.1 identified by match to protein family HMM PF00528 YP_002803453.1 identified by match to protein family HMM PF03180 YP_002803454.1 identified by match to protein family HMM PF03180 YP_002803455.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002803457.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002803458.1 identified by match to protein family HMM PF02588 YP_002803460.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002803461.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002803462.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_002803464.1 identified by match to protein family HMM PF01966 YP_002803465.1 identified by match to protein family HMM PF00171 YP_002803466.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002803467.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002803468.1 identified by match to protein family HMM PF01047 YP_002803469.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797 YP_002803473.1 identified by match to protein family HMM PF00528 YP_002803474.1 identified by match to protein family HMM PF00528 YP_002803475.1 identified by match to protein family HMM PF00005 YP_002803477.1 identified by match to protein family HMM PF00583 YP_002803479.1 identified by glimmer; putative YP_002803480.1 identified by match to protein family HMM PF03956 YP_002803481.1 identified by similarity to SP:P77791; match to protein family HMM PF00132 YP_002803482.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121 YP_002803484.1 identified by match to protein family HMM PF00571 YP_002803485.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002803488.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_002803489.1 identified by match to protein family HMM PF00266 YP_002803490.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002803491.1 identified by match to protein family HMM PF06245 YP_002803492.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_002803493.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002803494.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_002803495.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02080 YP_002803497.1 identified by similarity to SP:P21369; match to protein family HMM PF00857 YP_002803498.1 identified by match to protein family HMM PF00581 YP_002803501.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002803502.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_002803504.1 identified by match to protein family HMM PF00581 YP_002803505.1 identified by glimmer; putative YP_002803506.1 identified by match to protein family HMM PF01594 YP_002803507.1 identified by match to protein family HMM PF03819 YP_002803510.1 identified by glimmer; putative YP_002803511.1 identified by glimmer; putative YP_002803512.1 identified by match to protein family HMM PF01547 YP_002803513.1 identified by match to protein family HMM PF00528 YP_002803514.1 identified by match to protein family HMM PF00005 YP_002803517.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002803518.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_002803520.1 identified by match to protein family HMM PF04392 YP_002803521.1 identified by match to protein family HMM PF02653 YP_002803522.1 identified by match to protein family HMM PF00005 YP_002803523.1 identified by glimmer; putative YP_002803524.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002803525.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151; match to protein family HMM PF08449 YP_002803526.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08279 YP_002803527.1 identified by match to protein family HMM PF04227 YP_002803528.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745 YP_002803529.1 identified by similarity to SP:Q49135; match to protein family HMM PF04961 YP_002803530.1 identified by similarity to SP:P54382; match to protein family HMM PF00763; match to protein family HMM PF02882 YP_002803531.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002803532.1 identified by match to protein family HMM PF00583 YP_002803535.1 identified by match to protein family HMM PF02535 YP_002803536.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002803537.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_002803538.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002803539.1 identified by match to protein family HMM PF00497 YP_002803540.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212 YP_002803541.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268 YP_002803543.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002803545.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002803546.1 identified by match to protein family HMM PF02518 YP_002803547.1 identified by match to protein family HMM PF00005 YP_002803549.1 identified by match to protein family HMM PF03009 YP_002803551.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 YP_002803552.1 identified by glimmer; putative YP_002803553.1 identified by match to protein family HMM PF08922 YP_002803554.1 identified by match to protein family HMM PF02696 YP_002803555.1 identified by match to protein family HMM PF01593 YP_002803556.1 identified by match to protein family HMM PF00165 YP_002803557.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792 YP_002803558.1 identified by match to protein family HMM PF02055 YP_002803559.1 identified by match to protein family HMM PF00480 YP_002803560.1 identified by match to protein family HMM PF00232 YP_002803561.1 identified by similarity to SP:P19584; match to protein family HMM PF00686; match to protein family HMM PF01373 YP_002803562.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002803563.1 identified by match to protein family HMM PF00392 YP_002803564.1 identified by match to protein family HMM PF00005 YP_002803567.1 identified by glimmer; putative YP_002803569.1 identified by glimmer; putative YP_002803570.1 identified by match to protein family HMM PF00704; match to protein family HMM PF01476; match to protein family HMM PF08239 YP_002803571.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002803572.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_002803573.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_002803574.1 identified by glimmer; putative YP_002803575.1 identified by glimmer; putative YP_002803578.1 identified by match to protein family HMM PF01244 YP_002803579.1 identified by glimmer; putative YP_002803580.1 identified by match to protein family HMM PF02687 YP_002803581.1 identified by glimmer; putative YP_002803582.1 identified by match to protein family HMM PF00005 YP_002803583.1 identified by match to protein family HMM PF00528 YP_002803584.1 identified by match to protein family HMM PF00528 YP_002803585.1 identified by match to protein family HMM PF00496 YP_002803587.1 identified by similarity to SP:Q45537 YP_002803588.1 identified by similarity to SP:Q45538; match to protein family HMM PF05067 YP_002803591.1 identified by match to protein family HMM PF04525 YP_002803592.1 identified by glimmer; putative YP_002803593.1 identified by match to protein family HMM PF00692 YP_002803594.1 identified by match to protein family HMM TIGR02861 YP_002803597.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002803599.1 identified by match to protein family HMM PF00440 YP_002803601.1 identified by match to protein family HMM PF00005 YP_002803604.1 identified by glimmer; putative YP_002803605.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002803606.1 identified by glimmer; putative YP_002803607.1 identified by match to protein family HMM PF01381 YP_002803611.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196 YP_002803612.1 identified by match to protein family HMM PF00171 YP_002803613.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002803615.1 identified by match to protein family HMM PF09338 YP_002803616.1 Selenoprotein. identified by match to protein family HMM PF07355; match to protein family HMM TIGR01917; match to protein family HMM TIGR01918 YP_002803617.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_002803618.1 identified by match to protein family HMM PF00085 YP_002803619.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002803620.1 GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin YP_002803621.1 identified by match to protein family HMM PF08545 YP_002803622.1 identified by match to protein family HMM PF02504 YP_002803623.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_002803624.1 identified by match to protein family HMM PF07669 YP_002803625.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway YP_002803626.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway YP_002803627.1 identified by glimmer; putative YP_002803628.1 identified by match to protein family HMM PF00596 YP_002803629.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002803631.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002803632.1 identified by match to protein family HMM PF04239 YP_002803638.1 identified by glimmer; putative YP_002803639.1 identified by match to protein family HMM PF09579 YP_002803643.1 putative molybdenum cofactor-binding protein; participates in purine salvage YP_002803644.1 FAD-binding subunit; with XdhA and XdhC participates in purine salvage YP_002803645.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_002803646.1 identified by match to protein family HMM PF00383 YP_002803647.1 decatenates replicating daughter chromosomes YP_002803648.1 identified by match to protein family HMM PF02659 YP_002803651.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_002803652.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002803653.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002803654.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002803656.1 identified by match to protein family HMM PF00535 YP_002803661.1 identified by match to protein family HMM PF02583 YP_002803662.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_002803663.1 identified by match to protein family HMM PF00403 YP_002803664.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002803665.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002803666.1 identified by match to protein family HMM PF02517 YP_002803667.1 identified by match to protein family HMM PF02579 YP_002803668.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002803669.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002803670.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002803671.1 identified by match to protein family HMM PF01243 YP_002803672.1 identified by glimmer; putative YP_002803674.1 identified by glimmer; putative YP_002803675.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002803676.1 identified by glimmer; putative YP_002803679.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002803680.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01520 YP_002803685.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002803686.1 identified by match to protein family HMM PF01230 YP_002803688.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_002803689.1 identified by match to protein family HMM PF07907 YP_002803690.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_002803691.1 identified by match to protein family HMM PF02386 YP_002803692.1 identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573 YP_002803693.1 identified by match to protein family HMM PF07853 YP_002803694.1 identified by match to protein family HMM PF00392 YP_002803695.1 identified by match to protein family HMM PF01476; match to protein family HMM PF07486 YP_002803696.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_002803697.1 identified by match to protein family HMM PF04122 YP_002803698.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002 YP_002803699.1 identified by match to protein family HMM PF01255 YP_002803701.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002803702.1 identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702 YP_002803703.1 identified by match to protein family HMM PF00037 YP_002803704.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002803705.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151 YP_002803706.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002803708.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_002803709.1 identified by match to protein family HMM PF07690 YP_002803710.1 identified by match to protein family HMM PF01497 YP_002803711.1 identified by match to protein family HMM PF01032 YP_002803712.1 identified by match to protein family HMM PF00005 YP_002803714.1 identified by match to protein family HMM PF00037 YP_002803715.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002803716.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_002803717.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378 YP_002803718.1 identified by match to protein family HMM PF05913 YP_002803719.1 identified by match to protein family HMM PF06475 YP_002803720.1 identified by match to protein family HMM PF06555 YP_002803723.1 identified by glimmer; putative YP_002803725.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF06875 YP_002803726.1 identified by match to protein family HMM PF00496 YP_002803727.1 identified by match to protein family HMM PF00528 YP_002803728.1 identified by match to protein family HMM PF00528 YP_002803729.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005 YP_002803730.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005 YP_002803732.1 identified by match to protein family HMM PF00950 YP_002803733.1 identified by match to protein family HMM PF00005 YP_002803734.1 identified by match to protein family HMM PF01297 YP_002803736.1 identified by match to protein family HMM PF00271 YP_002803737.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002803739.1 identified by match to protein family HMM PF00528 YP_002803740.1 identified by match to protein family HMM PF00005 YP_002803741.1 identified by match to protein family HMM PF01475 YP_002803742.1 identified by match to protein family HMM PF02001 YP_002803743.1 identified by match to protein family HMM PF00246; match to protein family HMM PF01471; match to protein family HMM PF01476 YP_002803745.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_002803746.1 identified by match to protein family HMM PF00324 YP_002803747.1 identified by match to protein family HMM PF08000 YP_002803748.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002803749.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_002803750.1 identified by match to protein family HMM PF00005 YP_002803752.1 identified by match to protein family HMM PF01061 YP_002803753.1 identified by glimmer; putative YP_002803754.1 identified by match to protein family HMM PF00881 YP_002803756.1 identified by match to protein family HMM PF00313 YP_002803757.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_002803758.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002803759.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_002803760.1 identified by match to protein family HMM PF01625 YP_002803761.1 identified by match to protein family HMM PF00005 YP_002803762.1 identified by match to protein family HMM PF02687 YP_002803764.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002803765.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002803766.1 identified by match to protein family HMM PF00005 YP_002803769.1 identified by match to protein family HMM PF00155 YP_002803770.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00497 YP_002803771.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002803772.1 identified by match to protein family HMM PF00005 YP_002803773.1 identified by match to protein family HMM PF01381 YP_002803774.1 identified by match to protein family HMM PF00768 YP_002803775.1 identified by match to protein family HMM PF00293 YP_002803777.1 identified by match to protein family HMM PF00465 YP_002803778.1 identified by glimmer; putative YP_002803779.1 identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808 YP_002803780.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_002803781.1 identified by match to protein family HMM PF00497 YP_002803782.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002803784.1 identified by glimmer; putative YP_002803785.1 identified by glimmer; putative YP_002803786.1 identified by match to protein family HMM PF02491 YP_002803787.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002803788.1 identified by match to protein family HMM PF01520 YP_002803789.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_002803790.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002803791.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR02900 YP_002803794.1 identified by match to protein family HMM PF00465 YP_002803795.1 identified by match to protein family HMM PF05362 YP_002803796.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_002803797.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_002803798.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_002803799.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_002803800.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868 YP_002803801.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 YP_002803802.1 catalyzes the formation of oxaloacetate from L-aspartate YP_002803803.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_002803805.1 identified by match to protein family HMM PF00589 YP_002803806.1 identified by match to protein family HMM PF01381 YP_002803807.1 identified by glimmer; putative YP_002803808.1 identified by match to protein family HMM PF01381 YP_002803809.1 identified by match to protein family HMM PF01381 YP_002803810.1 identified by match to protein family HMM PF09669 YP_002803812.1 identified by glimmer; putative YP_002803813.1 identified by glimmer; putative YP_002803814.1 identified by glimmer; putative YP_002803816.1 identified by glimmer; putative YP_002803817.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002803819.1 identified by glimmer; putative YP_002803821.1 identified by match to protein family HMM PF07211 YP_002803822.1 identified by match to protein family HMM PF04404 YP_002803824.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714 YP_002803829.1 identified by glimmer; putative YP_002803830.1 identified by glimmer; putative YP_002803831.1 identified by glimmer; putative YP_002803832.1 identified by glimmer; putative YP_002803833.1 identified by glimmer; putative YP_002803834.1 identified by glimmer; putative YP_002803837.1 identified by glimmer; putative YP_002803842.1 identified by match to protein family HMM PF00589 YP_002803844.1 identified by match to protein family HMM PF01844 YP_002803845.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558 YP_002803846.1 identified by match to protein family HMM PF03354 YP_002803847.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_002803848.1 identified by match to protein family HMM PF00574 YP_002803849.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554 YP_002803850.1 identified by match to protein family HMM PF05135; match to protein family HMM TIGR01560 YP_002803851.1 identified by similarity to GB:ABR48571.1 YP_002803854.1 identified by glimmer; putative YP_002803857.1 identified by match to protein family HMM PF09393 YP_002803859.1 identified by glimmer; putative YP_002803860.1 identified by match to protein family HMM TIGR01760 YP_002803861.1 identified by similarity to GB:ABR48580.1 YP_002803863.1 identified by glimmer; putative YP_002803865.1 identified by match to protein family HMM PF04865 YP_002803867.1 identified by glimmer; putative YP_002803870.1 identified by similarity to SP:P15936 YP_002803872.1 identified by match to protein family HMM PF01520 YP_002803873.1 identified by glimmer; putative YP_002803876.1 identified by glimmer; putative YP_002803878.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_002803879.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002803880.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_002803881.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_002803883.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214 YP_002803884.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_002803885.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_002803886.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002803887.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615 YP_002803888.1 identified by match to protein family HMM PF08478 YP_002803889.1 identified by match to protein family HMM PF05949 YP_002803890.1 identified by match to protein family HMM PF06947 YP_002803891.1 identified by match to protein family HMM PF05949 YP_002803892.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_002803893.1 identified by match to protein family HMM PF04472 YP_002803894.1 identified by match to protein family HMM PF02325 YP_002803896.1 identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544 YP_002803897.1 identified by match to protein family HMM PF01761; match to protein family HMM TIGR01357 YP_002803898.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_002803899.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_002803900.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002803901.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02890 YP_002803902.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002803903.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_002803904.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_002803905.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_002803907.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_002803908.1 identified by match to protein family HMM PF01170 YP_002803909.1 identified by glimmer; putative YP_002803910.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_002803911.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141 YP_002803912.1 identified by match to protein family HMM PF00005 YP_002803914.1 identified by match to protein family HMM PF01734 YP_002803916.1 identified by match to protein family HMM PF01208 YP_002803917.1 identified by match to protein family HMM PF03553 YP_002803918.1 identified by match to protein family HMM PF00111 YP_002803919.1 identified by match to protein family HMM PF02492 YP_002803921.1 identified by match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM TIGR02370 YP_002803922.1 catalyze the formation of methyl-coenzyme M from methylcobalamin and coenzyme M YP_002803923.1 identified by match to protein family HMM PF01208 YP_002803924.1 identified by match to protein family HMM PF00005; match to protein family HMM PF09383 YP_002803925.1 identified by match to protein family HMM PF00528 YP_002803926.1 identified by match to protein family HMM PF03180 YP_002803927.1 identified by match to protein family HMM PF02493 YP_002803928.1 identified by match to protein family HMM PF00724 YP_002803929.1 catalyzes the formation of asparagine from aspartate and ammonia YP_002803930.1 identified by match to protein family HMM PF00355; match to protein family HMM PF01266 YP_002803931.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751 YP_002803932.1 identified by match to protein family HMM PF00488 YP_002803933.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248 YP_002803934.1 identified by match to protein family HMM PF04073 YP_002803935.1 identified by match to protein family HMM PF00005 YP_002803936.1 identified by match to protein family HMM PF02687 YP_002803937.1 identified by match to protein family HMM PF00440 YP_002803939.1 identified by match to protein family HMM PF00005 YP_002803940.1 identified by match to protein family HMM PF00528 YP_002803941.1 identified by match to protein family HMM PF00528 YP_002803942.1 identified by match to protein family HMM PF01547 YP_002803943.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771 YP_002803944.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002803945.1 identified by match to protein family HMM PF09719; match to protein family HMM TIGR01909 YP_002803946.1 identified by match to protein family HMM PF03595 YP_002803947.1 identified by glimmer; putative YP_002803948.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002803949.1 identified by match to protein family HMM PF03860 YP_002803950.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002803951.1 identified by match to protein family HMM PF01047 YP_002803953.1 identified by match to protein family HMM PF01638 YP_002803954.1 identified by match to protein family HMM PF00903 YP_002803955.1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated YP_002803956.1 identified by match to protein family HMM PF00165; match to protein family HMM PF09370 YP_002803957.1 identified by match to protein family HMM PF06792 YP_002803958.1 identified by match to protein family HMM PF09370 YP_002803959.1 identified by match to protein family HMM PF01381 YP_002803961.1 identified by glimmer; putative YP_002803962.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002803963.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002803964.1 identified by match to protein family HMM PF01325; match to protein family HMM PF02742 YP_002803966.1 identified by match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277 YP_002803967.1 identified by glimmer; putative YP_002803968.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002803969.1 identified by match to protein family HMM PF00903 YP_002803971.1 identified by match to protein family HMM PF00196 YP_002803972.1 identified by match to protein family HMM PF06445 YP_002803973.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002803974.1 identified by match to protein family HMM PF06050 YP_002803975.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002803976.1 identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367 YP_002803977.1 identified by match to protein family HMM PF04055 YP_002803978.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_002803979.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_002803980.1 identified by match to protein family HMM PF02517 YP_002803981.1 identified by match to protein family HMM PF00015 YP_002803982.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF06161 YP_002803984.1 identified by match to protein family HMM PF04198 YP_002803985.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_002803986.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_002803987.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_002803988.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_002803989.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002803990.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_002803991.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_002803992.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_002803993.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002803994.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002803995.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_002803996.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_002803997.1 identified by match to protein family HMM PF04143 YP_002803998.1 identified by match to protein family HMM PF01206 YP_002803999.1 identified by match to protein family HMM PF04143 YP_002804000.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002804001.1 identified by match to protein family HMM PF01235 YP_002804002.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_002804003.1 identified by match to protein family HMM PF04143 YP_002804004.1 identified by similarity to GB:AAF99691.1; match to protein family HMM PF00005 YP_002804007.1 identified by similarity to SP:P33112; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002804008.1 identified by similarity to SP:P33113; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002804009.1 identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078 YP_002804010.1 identified by match to protein family HMM PF00324 YP_002804011.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_002804012.1 identified by match to protein family HMM PF08876 YP_002804013.1 identified by glimmer; putative YP_002804014.1 identified by match to protein family HMM PF01966 YP_002804015.1 identified by glimmer; putative YP_002804016.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; match to protein family HMM PF08455 YP_002804017.1 identified by match to protein family HMM PF04607 YP_002804019.1 identified by match to protein family HMM PF00165 YP_002804020.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002804021.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463 YP_002804022.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002804023.1 identified by similarity to SP:P54495; match to protein family HMM PF00480 YP_002804024.1 identified by match to protein family HMM PF00128 YP_002804025.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003 YP_002804026.1 identified by match to protein family HMM PF03372 YP_002804027.1 identified by match to protein family HMM TIGR02840 YP_002804031.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002804032.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002804033.1 identified by match to protein family HMM PF07690 YP_002804034.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002804035.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002804036.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002804037.1 identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002804039.1 identified by similarity to GB:BAA77453.1; match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453 YP_002804040.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_002804041.1 identified by match to protein family HMM PF02965 YP_002804042.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607 YP_002804044.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002804046.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954 YP_002804047.1 identified by match to protein family HMM PF09585; match to protein family HMM TIGR02058 YP_002804048.1 identified by match to protein family HMM PF00676 YP_002804049.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002804050.1 identified by similarity to SP:P27748; match to protein family HMM PF01513 YP_002804051.1 identified by similarity to GB:AAA21747.1; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_002804052.1 identified by similarity to GB:AAA21748.1; match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_002804053.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_002804054.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_002804055.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069 YP_002804056.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002804057.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_002804058.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive YP_002804059.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002804060.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR00229 YP_002804061.1 identified by similarity to SP:P13604; match to protein family HMM PF00465 YP_002804062.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970 YP_002804063.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_002804064.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_002804065.1 identified by match to protein family HMM PF00805 YP_002804066.1 identified by match to protein family HMM PF02368 YP_002804067.1 identified by glimmer; putative YP_002804070.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08239 YP_002804071.1 identified by glimmer; putative YP_002804072.1 identified by glimmer; putative YP_002804074.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002804076.1 identified by match to protein family HMM PF01814 YP_002804077.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_002804078.1 identified by match to protein family HMM PF00015 YP_002804079.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002804080.1 identified by match to protein family HMM PF06161 YP_002804081.1 identified by match to protein family HMM PF00106 YP_002804082.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002804083.1 identified by match to protein family HMM PF07656 YP_002804085.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455 YP_002804086.1 identified by match to protein family HMM PF01980 YP_002804088.1 identified by match to protein family HMM PF02663 YP_002804089.1 identified by match to protein family HMM PF00496 YP_002804090.1 identified by match to protein family HMM PF00528 YP_002804091.1 identified by match to protein family HMM PF00528 YP_002804092.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002804093.1 identified by match to protein family HMM PF00929 YP_002804094.1 identified by match to protein family HMM PF06207 YP_002804095.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002804096.1 identified by match to protein family HMM PF00011 YP_002804097.1 identified by match to protein family HMM PF07690 YP_002804098.1 identified by match to protein family HMM PF00440 YP_002804100.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_002804101.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002804102.1 identified by glimmer; putative YP_002804105.1 identified by glimmer; putative YP_002804106.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08543 YP_002804107.1 identified by match to protein family HMM PF00188; match to protein family HMM PF01476; match to protein family HMM TIGR02899 YP_002804108.1 identified by glimmer; putative YP_002804109.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002804110.1 identified by match to protein family HMM PF00005 YP_002804111.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460 YP_002804112.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584 YP_002804113.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002804114.1 identified by match to protein family HMM PF00575 YP_002804115.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_002804116.1 identified by glimmer; putative YP_002804117.1 identified by match to protein family HMM PF00560; match to protein family HMM PF07532 YP_002804118.1 identified by match to protein family HMM PF01832 YP_002804119.1 identified by match to protein family HMM PF00210 YP_002804120.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00072; match to protein family HMM PF04509 YP_002804121.1 identified by match to protein family HMM PF04509 YP_002804122.1 identified by match to protein family HMM PF07670 YP_002804123.1 identified by match to protein family HMM PF00269 YP_002804124.1 identified by match to protein family HMM PF00269 YP_002804125.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002804127.1 Represses a number of genes involved in the response to DNA damage YP_002804128.1 identified by match to protein family HMM PF01053; match to protein family HMM PF06838 YP_002804129.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_002804130.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002804131.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_002804132.1 This protein performs the mismatch recognition step during the DNA repair process YP_002804133.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002804134.1 identified by match to protein family HMM PF00155 YP_002804136.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002804137.1 identified by match to protein family HMM PF00583 YP_002804138.1 identified by match to protein family HMM TIGR02906 YP_002804139.1 these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_002804140.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_002804141.1 identified by match to protein family HMM PF07736; match to protein family HMM TIGR01796 YP_002804142.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_002804143.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812 YP_002804144.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002804145.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002804147.1 identified by match to protein family HMM PF06354 YP_002804148.1 identified by match to protein family HMM PF00535 YP_002804149.1 identified by glimmer; putative YP_002804150.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002804151.1 identified by match to protein family HMM PF02683 YP_002804152.1 identified by match to protein family HMM PF00085 YP_002804153.1 identified by match to protein family HMM PF00795 YP_002804154.1 identified by glimmer; putative YP_002804155.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080 YP_002804156.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_002804157.1 identified by match to protein family HMM PF00583 YP_002804159.1 identified by match to protein family HMM PF01906 YP_002804160.1 identified by glimmer; putative YP_002804162.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229 YP_002804163.1 identified by match to protein family HMM PF07228 YP_002804164.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229 YP_002804165.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124 YP_002804166.1 identified by match to protein family HMM PF01924 YP_002804167.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074 YP_002804168.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143 YP_002804169.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002804170.1 identified by match to protein family HMM PF00173 YP_002804171.1 identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072 YP_002804172.1 identified by match to protein family HMM PF00374 YP_002804173.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391 YP_002804176.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_002804177.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002804179.1 identified by match to protein family HMM PF01061 YP_002804180.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002804181.1 identified by match to protein family HMM PF00005 YP_002804182.1 identified by similarity to SP:P29166; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512 YP_002804183.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512 YP_002804184.1 identified by match to protein family HMM PF01257 YP_002804185.1 identified by match to protein family HMM PF00999 YP_002804186.1 identified by match to protein family HMM PF03747 YP_002804187.1 identified by match to protein family HMM PF01594 YP_002804188.1 identified by match to protein family HMM PF00768 YP_002804190.1 identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874 YP_002804191.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer YP_002804192.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB YP_002804193.1 identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002804195.1 identified by match to protein family HMM PF03372 YP_002804197.1 identified by similarity to SP:P39142; match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644 YP_002804198.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_002804199.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225 YP_002804201.1 identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831 YP_002804203.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052 YP_002804204.1 identified by match to protein family HMM PF00324 YP_002804205.1 identified by match to protein family HMM PF00877 YP_002804206.1 identified by glimmer; putative YP_002804209.1 identified by match to protein family HMM PF01520; match to protein family HMM PF08239 YP_002804212.1 identified by glimmer; putative YP_002804213.1 identified by glimmer; putative YP_002804219.1 identified by match to protein family HMM TIGR01760 YP_002804222.1 identified by match to protein family HMM TIGR01603 YP_002804224.1 identified by match to protein family HMM TIGR01725 YP_002804225.1 identified by match to protein family HMM TIGR01563 YP_002804226.1 identified by match to protein family HMM TIGR01560 YP_002804227.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554 YP_002804228.1 identified by match to protein family HMM PF00574 YP_002804229.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_002804231.1 identified by match to protein family HMM PF03354 YP_002804232.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558 YP_002804233.1 identified by match to protein family HMM PF01844 YP_002804234.1 identified by glimmer; putative YP_002804235.1 identified by glimmer; putative YP_002804236.1 identified by glimmer; putative YP_002804237.1 identified by glimmer; putative YP_002804238.1 identified by glimmer; putative YP_002804239.1 identified by glimmer; putative YP_002804242.1 identified by match to protein family HMM PF01541 YP_002804251.1 identified by glimmer; putative YP_002804252.1 identified by match to protein family HMM PF01381 YP_002804256.1 identified by match to protein family HMM PF00589; match to protein family HMM PF04313 YP_002804260.1 identified by similarity to SP:P46352; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002804261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875 YP_002804262.1 identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860 YP_002804263.1 identified by match to protein family HMM PF04204; match to protein family HMM TIGR01001 YP_002804264.1 identified by match to protein family HMM PF00742; match to protein family HMM PF03447 YP_002804265.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_002804266.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_002804267.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_002804268.1 identified by match to protein family HMM PF01513 YP_002804269.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_002804270.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_002804272.1 identified by match to protein family HMM PF00348 YP_002804273.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_002804274.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002804275.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_002804276.1 identified by match to protein family HMM PF03780 YP_002804278.1 identified by match to protein family HMM TIGR02830 YP_002804279.1 identified by match to protein family HMM PF09581; match to protein family HMM TIGR02896 YP_002804280.1 identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829 YP_002804281.1 identified by match to protein family HMM PF09555; match to protein family HMM TIGR02849 YP_002804282.1 identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848 YP_002804283.1 necessary for complete engulfment of forespore YP_002804284.1 identified by match to protein family HMM TIGR02858 YP_002804286.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002804287.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_002804288.1 identified by match to protein family HMM PF01202 YP_002804290.1 identified by glimmer; putative YP_002804293.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002804294.1 identified by match to protein family HMM TIGR02532 YP_002804296.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002804297.1 identified by match to protein family HMM PF00482 YP_002804298.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157 YP_002804301.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_002804302.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833 YP_002804303.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002804304.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002804305.1 identified by match to protein family HMM PF01230 YP_002804306.1 identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788 YP_002804307.1 identified by glimmer; putative YP_002804308.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002804309.1 identified by match to protein family HMM PF03415; match to protein family HMM TIGR02806 YP_002804311.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002804312.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002804313.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_002804314.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002804315.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002804318.1 identified by match to protein family HMM PF00005 YP_002804320.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002804321.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002804322.1 identified by match to protein family HMM PF01047 YP_002804323.1 identified by match to protein family HMM PF00899 YP_002804324.1 identified by match to protein family HMM PF02597 YP_002804325.1 identified by match to protein family HMM PF01314; match to protein family HMM PF02730 YP_002804326.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR00229 YP_002804327.1 identified by match to protein family HMM PF03473 YP_002804328.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_002804329.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_002804330.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_002804331.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_002804332.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_002804333.1 identified by match to protein family HMM PF00005 YP_002804334.1 identified by match to protein family HMM PF00528 YP_002804335.1 identified by match to protein family HMM PF01547 YP_002804336.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002804337.1 identified by glimmer; putative YP_002804338.1 identified by match to protein family HMM PF09335 YP_002804339.1 identified by match to protein family HMM PF00005 YP_002804340.1 identified by match to protein family HMM PF02687 YP_002804342.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002804343.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002804344.1 identified by match to protein family HMM PF00376 YP_002804345.1 identified by match to protein family HMM PF03358 YP_002804347.1 identified by match to protein family HMM PF00560 YP_002804348.1 identified by match to protein family HMM PF02839; match to protein family HMM TIGR03296 YP_002804349.1 identified by match to protein family HMM PF00158; match to protein family HMM PF07728 YP_002804351.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_002804352.1 identified by match to protein family HMM PF00375 YP_002804353.1 identified by match to protein family HMM PF00155 YP_002804354.1 identified by match to protein family HMM PF06354 YP_002804355.1 identified by match to protein family HMM PF00560 YP_002804356.1 identified by match to protein family HMM TIGR03296 YP_002804357.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002804358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002804359.1 identified by match to protein family HMM PF02596 YP_002804360.1 identified by match to protein family HMM PF02361 YP_002804361.1 identified by match to protein family HMM PF00005 YP_002804363.1 identified by match to protein family HMM PF01168 YP_002804364.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002804365.1 identified by match to protein family HMM PF03323 YP_002804366.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002804367.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002804368.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002804369.1 identified by match to protein family HMM PF09719; match to protein family HMM TIGR01909 YP_002804370.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_002804371.1 identified by match to protein family HMM PF04055 YP_002804372.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002804373.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_002804374.1 molecular chaperone YP_002804375.1 identified by match to protein family HMM PF00488 YP_002804376.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992 YP_002804377.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403 YP_002804378.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404 YP_002804379.1 identified by match to protein family HMM PF00359; match to protein family HMM TIGR00848 YP_002804380.1 identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427 YP_002804381.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_002804382.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway YP_002804383.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002804384.1 identified by similarity to GB:AAO35217.1 YP_002804385.1 identified by match to protein family HMM PF01042 YP_002804386.1 identified by match to protein family HMM PF04055 YP_002804387.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_002804389.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002804391.1 identified by match to protein family HMM PF01168 YP_002804393.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002804394.1 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis YP_002804395.1 identified by match to protein family HMM PF00860 YP_002804396.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002804397.1 identified by match to protein family HMM PF06354 YP_002804398.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_002804399.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002804400.1 identified by match to protein family HMM PF00188; match to protein family HMM TIGR02909 YP_002804401.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002804402.1 identified by match to protein family HMM PF00892 YP_002804403.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002804404.1 identified by match to protein family HMM PF00005 YP_002804405.1 identified by match to protein family HMM PF00497 YP_002804407.1 identified by match to protein family HMM PF00266 YP_002804408.1 identified by match to protein family HMM PF00302 YP_002804411.1 identified by similarity to GB:CAG19110.1 YP_002804413.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002804414.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002804415.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002804416.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250 YP_002804417.1 identified by glimmer; putative YP_002804418.1 identified by match to protein family HMM PF00209 YP_002804419.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002804420.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_002804421.1 identified by match to protein family HMM PF01042 YP_002804422.1 identified by glimmer; putative YP_002804424.1 identified by glimmer; putative YP_002804425.1 identified by glimmer; putative YP_002804427.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_002804428.1 identified by match to protein family HMM PF00440 YP_002804429.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002804430.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002804431.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002804432.1 identified by glimmer; putative YP_002804434.1 identified by match to protein family HMM PF00535 YP_002804435.1 identified by glimmer; putative YP_002804436.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR03570 YP_002804437.1 identified by match to protein family HMM PF01041 YP_002804438.1 identified by glimmer; putative YP_002804439.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01208 YP_002804440.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_002804444.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002804446.1 identified by match to protein family HMM PF04892 YP_002804447.1 identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426 YP_002804448.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_002804452.1 identified by match to protein family HMM PF04055 YP_002804456.1 identified by glimmer; putative YP_002804457.1 identified by match to protein family HMM PF01520; match to protein family HMM PF05036 YP_002804458.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593 YP_002804459.1 identified by glimmer; putative YP_002804460.1 identified by glimmer; putative YP_002804462.1 identified by match to protein family HMM PF04313; match to protein family HMM PF04851 YP_002804464.1 identified by match to protein family HMM PF02384 YP_002804465.1 identified by glimmer; putative YP_002804466.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002804468.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002804469.1 identified by match to protein family HMM PF00239 YP_002804470.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002804471.1 identified by match to protein family HMM PF00535 YP_002804472.1 identified by match to protein family HMM PF00534; match to protein family HMM PF00535 YP_002804473.1 identified by match to protein family HMM PF03551 YP_002804475.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF03547 YP_002804476.1 identified by similarity to SP:Q46306; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231 YP_002804477.1 identified by match to protein family HMM PF02839; match to protein family HMM PF03272 YP_002804478.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_002804479.1 identified by match to protein family HMM PF02583 YP_002804480.1 identified by match to protein family HMM PF00936 YP_002804481.1 identified by match to protein family HMM PF06130 YP_002804482.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02518 YP_002804483.1 identified by match to protein family HMM PF00936 YP_002804484.1 identified by match to protein family HMM PF05899; match to protein family HMM PF06249 YP_002804485.1 identified by match to protein family HMM PF03319 YP_002804486.1 identified by match to protein family HMM PF00936 YP_002804487.1 identified by match to protein family HMM TIGR02529 YP_002804490.1 identified by match to protein family HMM PF00936 YP_002804491.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_002804492.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901 YP_002804494.1 identified by match to protein family HMM PF00936 YP_002804495.1 identified by match to protein family HMM PF00936 YP_002804496.1 identified by glimmer; putative YP_002804498.1 identified by match to protein family HMM PF00376 YP_002804499.1 identified by match to protein family HMM PF00465 YP_002804500.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002804501.1 identified by match to protein family HMM PF07690 YP_002804502.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002804503.1 identified by match to protein family HMM PF00583; match to protein family HMM PF01047 YP_002804504.1 identified by match to protein family HMM PF09234 YP_002804506.1 identified by match to protein family HMM TIGR01764 YP_002804507.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002804508.1 identified by match to protein family HMM TIGR01167 YP_002804509.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002804510.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002804513.1 identified by match to protein family HMM PF00005 YP_002804514.1 identified by match to protein family HMM PF02687 YP_002804515.1 FAD/NAD(P)-binding domain YP_002804518.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002804519.1 identified by match to protein family HMM PF01261 YP_002804520.1 identified by match to protein family HMM PF01761 YP_002804521.1 identified by match to protein family HMM PF02687 YP_002804522.1 identified by match to protein family HMM PF00005 YP_002804524.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279 YP_002804525.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_002804526.1 identified by match to protein family HMM PF02302 YP_002804527.1 identified by match to protein family HMM PF00359 YP_002804528.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_002804529.1 identified by glimmer; putative YP_002804530.1 identified by glimmer; putative YP_002804532.1 identified by match to protein family HMM PF00132 YP_002804533.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002804534.1 identified by match to protein family HMM PF08242 YP_002804535.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002804537.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_002804538.1 identified by match to protein family HMM PF00376 YP_002804539.1 identified by glimmer; putative YP_002804541.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_002804542.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002804544.1 identified by match to protein family HMM PF01381 YP_002804545.1 identified by match to protein family HMM PF07859 YP_002804546.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_002804547.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR03173 YP_002804548.1 identified by glimmer; putative YP_002804549.1 identified by match to protein family HMM PF00324 YP_002804551.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002804553.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_002804554.1 identified by match to protein family HMM PF01012 YP_002804555.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002804556.1 identified by similarity to SP:P11570; match to protein family HMM PF06050 YP_002804557.1 identified by similarity to SP:P11569; match to protein family HMM PF06050 YP_002804558.1 identified by similarity to GB:AAV40822.1; match to protein family HMM PF02515 YP_002804559.1 identified by match to protein family HMM PF00037 YP_002804560.1 identified by match to protein family HMM PF06050 YP_002804561.1 identified by match to protein family HMM PF01869; match to protein family HMM PF06050; match to protein family HMM TIGR00241 YP_002804562.1 identified by match to protein family HMM PF00015 YP_002804564.1 identified by match to protein family HMM PF00583 YP_002804565.1 identified by similarity to SP:Q8Y6I2; match to protein family HMM PF00903 YP_002804566.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791 YP_002804567.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_002804569.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002804571.1 identified by match to protein family HMM PF02517 YP_002804572.1 identified by match to protein family HMM PF03734 YP_002804573.1 identified by match to protein family HMM PF00440 YP_002804576.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002804577.1 identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702 YP_002804578.1 identified by glimmer; putative YP_002804580.1 identified by match to protein family HMM PF01155 YP_002804581.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_002804582.1 identified by match to protein family HMM PF02579 YP_002804583.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01656 YP_002804584.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01656 YP_002804585.1 identified by match to protein family HMM PF02579 YP_002804586.1 identified by glimmer; putative YP_002804587.1 identified by match to protein family HMM PF00691 YP_002804588.1 With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_002804590.1 identified by match to protein family HMM PF04122 YP_002804593.1 identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733 YP_002804594.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_002804595.1 identified by match to protein family HMM PF01212 YP_002804596.1 identified by glimmer; putative YP_002804597.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_002804599.1 identified by match to protein family HMM PF00106 YP_002804601.1 identified by match to protein family HMM PF00005 YP_002804602.1 identified by match to protein family HMM PF00583 YP_002804603.1 identified by match to protein family HMM PF01047 YP_002804606.1 identified by match to protein family HMM PF01208 YP_002804607.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_002804608.1 identified by match to protein family HMM PF00376; match to protein family HMM PF06445 YP_002804609.1 identified by match to protein family HMM PF00324 YP_002804610.1 identified by match to protein family HMM PF01661 YP_002804611.1 identified by match to protein family HMM PF06961 YP_002804613.1 identified by match to protein family HMM PF01047 YP_002804616.1 identified by match to protein family HMM PF02110 YP_002804617.1 identified by match to protein family HMM TIGR02359 YP_002804618.1 identified by glimmer; putative YP_002804619.1 identified by match to protein family HMM PF00583 YP_002804620.1 identified by match to protein family HMM PF00753 YP_002804622.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_002804623.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_002804624.1 identified by match to protein family HMM PF02632 YP_002804625.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002804627.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002804628.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002804630.1 identified by glimmer; putative YP_002804632.1 identified by match to protein family HMM PF07485 YP_002804633.1 identified by glimmer; putative YP_002804634.1 identified by match to protein family HMM PF02275; match to protein family HMM PF03417 YP_002804635.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002804636.1 identified by glimmer; putative YP_002804637.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002804638.1 identified by glimmer; putative YP_002804639.1 identified by glimmer; putative YP_002804641.1 identified by match to protein family HMM PF01381 YP_002804642.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002804644.1 identified by glimmer; putative YP_002804645.1 identified by glimmer; putative YP_002804646.1 identified by glimmer; putative YP_002804647.1 identified by glimmer; putative YP_002804648.1 identified by match to protein family HMM PF01381 YP_002804649.1 identified by glimmer; putative YP_002804651.1 identified by glimmer; putative YP_002804652.1 identified by glimmer; putative YP_002804653.1 identified by match to protein family HMM PF01520; match to protein family HMM PF08239 YP_002804660.1 identified by match to protein family HMM PF04865 YP_002804662.1 identified by glimmer; putative YP_002804666.1 identified by match to protein family HMM TIGR01760 YP_002804668.1 identified by match to protein family HMM PF08890 YP_002804669.1 identified by match to protein family HMM PF09393 YP_002804674.1 identified by glimmer; putative YP_002804675.1 identified by glimmer; putative YP_002804680.1 identified by glimmer; putative YP_002804683.1 identified by match to protein family HMM PF04466; match to protein family HMM PF07570; match to protein family HMM TIGR01547 YP_002804685.1 identified by match to protein family HMM PF03413 YP_002804686.1 identified by glimmer; putative YP_002804687.1 identified by match to protein family HMM PF02368 YP_002804688.1 identified by glimmer; putative YP_002804689.1 identified by glimmer; putative YP_002804690.1 identified by match to protein family HMM PF09643 YP_002804691.1 identified by glimmer; putative YP_002804692.1 identified by match to protein family HMM PF02086 YP_002804694.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002804698.1 identified by glimmer; putative YP_002804699.1 identified by glimmer; putative YP_002804701.1 identified by glimmer; putative YP_002804702.1 identified by glimmer; putative YP_002804706.1 identified by match to protein family HMM PF06356 YP_002804707.1 identified by glimmer; putative YP_002804711.1 identified by match to protein family HMM PF03819 YP_002804712.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_002804714.1 identified by match to protein family HMM PF00249 YP_002804715.1 identified by glimmer; putative YP_002804717.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714 YP_002804720.1 identified by glimmer; putative YP_002804722.1 identified by match to protein family HMM PF05565 YP_002804723.1 identified by glimmer; putative YP_002804724.1 identified by glimmer; putative YP_002804727.1 identified by match to protein family HMM PF03374; match to protein family HMM PF08346 YP_002804728.1 identified by match to protein family HMM PF01381 YP_002804729.1 identified by match to protein family HMM PF01381 YP_002804730.1 identified by match to protein family HMM PF06114 YP_002804732.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_002804737.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_002804738.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_002804739.1 identified by match to protein family HMM PF00005 YP_002804740.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002804741.1 identified by match to protein family HMM PF00165 YP_002804745.1 identified by match to protein family HMM PF00005 YP_002804746.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002804747.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002804748.1 identified by match to protein family HMM PF00929 YP_002804749.1 identified by match to protein family HMM PF07876 YP_002804750.1 identified by match to protein family HMM PF00753 YP_002804751.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_002804752.1 identified by match to protein family HMM PF01381 YP_002804753.1 involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links YP_002804754.1 identified by glimmer; putative YP_002804755.1 identified by glimmer; putative YP_002804756.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002804758.1 identified by glimmer; putative YP_002804759.1 identified by match to protein family HMM PF02366 YP_002804762.1 identified by glimmer; putative YP_002804763.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_002804764.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002804767.1 identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_002804769.1 identified by glimmer; putative YP_002804770.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02517 YP_002804771.1 identified by glimmer; putative YP_002804772.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002804773.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002804774.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002804775.1 identified by match to protein family HMM PF00627 YP_002804776.1 identified by glimmer; putative YP_002804778.1 identified by glimmer; putative YP_002804779.1 identified by match to protein family HMM PF01381 YP_002804780.1 identified by match to protein family HMM PF07927 YP_002804781.1 identified by match to protein family HMM PF03681 YP_002804782.1 identified by match to protein family HMM PF01520; match to protein family HMM PF08239 YP_002804787.1 identified by glimmer; putative YP_002804792.1 identified by match to protein family HMM PF04865 YP_002804796.1 identified by match to protein family HMM PF01476 YP_002804799.1 identified by glimmer; putative YP_002804800.1 identified by match to protein family HMM PF08890 YP_002804801.1 identified by match to protein family HMM PF09393 YP_002804803.1 identified by glimmer; putative YP_002804807.1 identified by glimmer; putative YP_002804809.1 identified by similarity to GB:CAA61868.1; match to protein family HMM PF06810 YP_002804810.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002804812.1 identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641 YP_002804813.1 identified by match to protein family HMM PF05133; match to protein family HMM TIGR01538 YP_002804814.1 identified by match to protein family HMM PF04466; match to protein family HMM TIGR01547 YP_002804815.1 identified by match to protein family HMM PF03592 YP_002804816.1 identified by glimmer; putative YP_002804818.1 identified by match to protein family HMM PF00176 YP_002804821.1 identified by match to protein family HMM PF05272 YP_002804824.1 identified by match to protein family HMM PF00476 YP_002804831.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002804833.1 identified by match to protein family HMM PF09669; match to protein family HMM TIGR02681 YP_002804835.1 identified by match to protein family HMM PF01381 YP_002804836.1 identified by match to protein family HMM PF01381 YP_002804837.1 identified by match to protein family HMM PF00239 YP_002804838.1 identified by match to protein family HMM PF01134 YP_002804839.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002804840.1 identified by match to protein family HMM PF04070 YP_002804841.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_002804842.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002804843.1 identified by match to protein family HMM PF00893 YP_002804845.1 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate YP_002804846.1 identified by match to protein family HMM PF04232 YP_002804847.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_002804848.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002804849.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_002804850.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 YP_002804851.1 identified by match to protein family HMM PF01580; match to protein family HMM PF09397 YP_002804852.1 identified by match to protein family HMM PF00574 YP_002804853.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive YP_002804854.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_002804855.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002804856.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR03591 YP_002804857.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002804858.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_002804859.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002804860.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002804861.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002804862.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002804863.1 identified by match to protein family HMM PF01248 YP_002804864.1 identified by match to protein family HMM PF04296 YP_002804865.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002804866.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_002804867.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity YP_002804868.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002804869.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_002804870.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002804872.1 identified by glimmer; putative YP_002804873.1 identified by glimmer; putative YP_002804874.1 identified by match to protein family HMM PF01148 YP_002804875.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_002804876.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002804877.1 Catalyzes the phosphorylation of UMP to UDP YP_002804878.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002804879.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002804880.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_002804881.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_002804882.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_002804883.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368 YP_002804884.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_002804885.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002804886.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_002804887.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002804888.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002804889.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002804890.1 Essential for efficient processing of 16S rRNA YP_002804892.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_002804893.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_002804894.1 identified by match to protein family HMM PF04297 YP_002804895.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_002804896.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_002804898.1 identified by match to protein family HMM PF04055 YP_002804899.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002804900.1 carries the fatty acid chain in fatty acid biosynthesis YP_002804901.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002804902.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002804903.1 identified by match to protein family HMM PF02620 YP_002804904.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_002804905.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_002804907.1 Selenoprotein. identified by similarity to GB:CAB38127.2 YP_002804908.1 identified by glimmer; putative YP_002804909.1 identified by similarity to GB:CAB38126.1 YP_002804910.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative YP_002804911.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01512 YP_002804913.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002804916.1 identified by match to protein family HMM PF00324 YP_002804918.1 identified by match to protein family HMM PF05544 YP_002804919.1 Selenoprotein. identified by similarity to GB:CAB38127.2 YP_002804920.1 identified by glimmer; putative YP_002804921.1 identified by similarity to GB:CAB38126.1; match to protein family HMM PF09338 YP_002804922.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative YP_002804923.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01512 YP_002804924.1 identified by glimmer; putative YP_002804925.1 identified by match to protein family HMM PF01512 YP_002804932.1 identified by match to protein family HMM PF01512 YP_002804933.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00571; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002804934.1 identified by match to protein family HMM PF05636 YP_002804935.1 identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871 YP_002804937.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002804938.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_002804939.1 catalyzes branch migration in Holliday junction intermediates YP_002804940.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599 YP_002804941.1 identified by match to protein family HMM PF03780 YP_002804942.1 required for 70S ribosome assembly YP_002804943.1 identified by glimmer; putative YP_002804945.1 identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378 YP_002804946.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_002804947.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_002804948.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714 YP_002804949.1 identified by match to protein family HMM PF00481 YP_002804950.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_002804951.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_002804952.1 identified by match to protein family HMM PF04298 YP_002804953.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_002804954.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002804955.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002804956.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_002804957.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_002804958.1 Essential for recycling GMP and indirectly, cGMP YP_002804959.1 identified by match to protein family HMM PF04025 YP_002804960.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255 YP_002804961.1 identified by match to protein family HMM PF00710 YP_002804963.1 identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836 YP_002804965.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002804966.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002804967.1 identified by match to protein family HMM PF04459 YP_002804968.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_002804969.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002804970.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002804971.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002804972.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136 YP_002804973.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_002804974.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002804975.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_002804976.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_002804977.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_002804978.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin YP_002804979.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation YP_002804980.1 identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854 YP_002804981.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002804982.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_002804983.1 identified by match to protein family HMM PF00535 YP_002804984.1 identified by glimmer; putative YP_002804985.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_002804986.1 identified by match to protein family HMM PF01488; match to protein family HMM PF08501 YP_002804987.1 sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment YP_002804990.1 identified by similarity to GB:ABR33837.1 YP_002804992.1 identified by match to protein family HMM PF09557; match to protein family HMM TIGR02271 YP_002804993.1 identified by match to protein family HMM PF09557; match to protein family HMM TIGR02271 YP_002804995.1 identified by glimmer; putative YP_002804997.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616 YP_002804998.1 identified by glimmer; putative YP_002804999.1 identified by match to protein family HMM PF00905 YP_002805000.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_002805001.1 identified by match to protein family HMM PF01136 YP_002805002.1 identified by match to protein family HMM PF01596 YP_002805003.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_002805004.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_002805005.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002805006.1 identified by match to protein family HMM PF01475 YP_002805007.1 identified by match to protein family HMM PF06949 YP_002805008.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_002805009.1 identified by match to protein family HMM PF06135 YP_002805010.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002805011.1 identified by match to protein family HMM PF01594 YP_002805013.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR03419 YP_002805014.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR03402 YP_002805015.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002805016.1 identified by match to protein family HMM PF00004 YP_002805017.1 identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856 YP_002805018.1 identified by match to protein family HMM PF03547 YP_002805019.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002805020.1 identified by match to protein family HMM PF01206; match to protein family HMM TIGR03527 YP_002805021.1 catalyzes the formation of L-proline from L-ornithine YP_002805022.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002805023.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002805025.1 identified by match to protein family HMM PF07833 YP_002805026.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857 YP_002805027.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002805028.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01326 YP_002805030.1 identified by match to protein family HMM PF00501 YP_002805031.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545 YP_002805033.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550 YP_002805034.1 identified by match to protein family HMM PF00583 YP_002805038.1 identified by glimmer; putative YP_002805039.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_002805040.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_002805041.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002805042.1 identified by match to protein family HMM PF06738 YP_002805044.1 identified by match to protein family HMM PF02583 YP_002805045.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002805047.1 identified by glimmer; putative YP_002805048.1 identified by glimmer; putative YP_002805049.1 identified by glimmer; putative YP_002805050.1 identified by similarity to GB:ABS33456.1 YP_002805051.1 identified by glimmer; putative YP_002805053.1 identified by match to protein family HMM PF01520; match to protein family HMM PF08239 YP_002805055.1 identified by similarity to SP:P15936 YP_002805061.1 identified by match to protein family HMM TIGR01760 YP_002805064.1 identified by match to protein family HMM TIGR01603 YP_002805066.1 identified by match to protein family HMM TIGR01725 YP_002805067.1 identified by match to protein family HMM TIGR01563 YP_002805068.1 identified by match to protein family HMM PF05135; match to protein family HMM TIGR01560 YP_002805069.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554 YP_002805070.1 identified by match to protein family HMM PF00574 YP_002805071.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_002805073.1 identified by match to protein family HMM PF03354 YP_002805074.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558 YP_002805075.1 identified by match to protein family HMM PF01844 YP_002805086.1 identified by glimmer; putative YP_002805094.1 identified by glimmer; putative YP_002805095.1 identified by match to protein family HMM PF01381 YP_002805099.1 identified by glimmer; putative YP_002805100.1 identified by match to protein family HMM PF04471 YP_002805103.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002805104.1 identified by match to protein family HMM PF00589 YP_002805105.1 catalyzes the removal of amino acids from the N termini of peptides YP_002805106.1 identified by match to protein family HMM PF01544 YP_002805107.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_002805108.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_002805109.1 identified by match to protein family HMM PF05979 YP_002805110.1 identified by match to protein family HMM PF09335 YP_002805111.1 identified by match to protein family HMM PF09335 YP_002805112.1 identified by match to protein family HMM PF02754 YP_002805115.1 identified by match to protein family HMM PF00535 YP_002805116.1 identified by match to protein family HMM PF00581 YP_002805117.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_002805118.1 identified by glimmer; putative YP_002805120.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_002805122.1 identified by match to protein family HMM PF01156 YP_002805123.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_002805125.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex YP_002805126.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_002805127.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex YP_002805128.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex YP_002805129.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex YP_002805130.1 identified by match to protein family HMM PF01991 YP_002805131.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits YP_002805132.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel. YP_002805134.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055 YP_002805136.1 identified by match to protein family HMM PF00882 YP_002805138.1 identified by similarity to SP:P04191; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002805139.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_002805140.1 identified by glimmer; putative YP_002805141.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene YP_002805142.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene YP_002805145.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937 YP_002805146.1 identified by match to protein family HMM PF07238 YP_002805147.1 identified by match to protein family HMM PF01656 YP_002805148.1 positive regulator of class III flagellar genes YP_002805149.1 membrane protein involved in the flagellar export apparatus YP_002805150.1 FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined YP_002805151.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402 YP_002805152.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_002805153.1 identified by match to protein family HMM TIGR03500 YP_002805154.1 identified by match to protein family HMM PF03748 YP_002805155.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00691 YP_002805156.1 identified by match to protein family HMM PF01618 YP_002805157.1 identified by match to protein family HMM PF06289 YP_002805158.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR03506 YP_002805159.1 identified by match to protein family HMM TIGR02530 YP_002805160.1 identified by match to protein family HMM PF03963 YP_002805161.1 identified by match to protein family HMM PF02120 YP_002805162.1 identified by match to protein family HMM TIGR02473 YP_002805163.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR03496; match to protein family HMM TIGR03497 YP_002805165.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002805166.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_002805167.1 forms a junction between the M-ring and FlgB during flagella biosynthesis YP_002805168.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_002805169.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_002805170.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_002805172.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_002805173.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_002805176.1 identified by match to protein family HMM PF00614 YP_002805178.1 identified by glimmer; putative YP_002805179.1 identified by match to protein family HMM PF04892 YP_002805180.1 identified by match to protein family HMM PF01943 YP_002805181.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002805182.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666 YP_002805183.1 identified by match to protein family HMM PF02348; match to protein family HMM PF04101 YP_002805185.1 identified by match to protein family HMM PF05855 YP_002805187.1 identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031 YP_002805188.1 identified by match to protein family HMM PF02397 YP_002805189.1 identified by match to protein family HMM TIGR01007 YP_002805190.1 identified by match to protein family HMM PF02811 YP_002805191.1 identified by match to protein family HMM PF02706 YP_002805192.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002805194.1 identified by glimmer; putative YP_002805196.1 identified by glimmer; putative YP_002805197.1 identified by match to protein family HMM PF00015 YP_002805198.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_002805201.1 identified by match to protein family HMM TIGR03590 YP_002805202.1 identified by match to protein family HMM PF00657 YP_002805204.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719 YP_002805206.1 identified by match to protein family HMM PF00534 YP_002805208.1 identified by match to protein family HMM PF00534 YP_002805212.1 identified by glimmer; putative YP_002805214.1 identified by match to protein family HMM PF00534 YP_002805215.1 identified by match to protein family HMM PF04055 YP_002805216.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002805218.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis YP_002805219.1 identified by match to protein family HMM PF08889 YP_002805220.1 identified by match to protein family HMM PF04055 YP_002805221.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_002805222.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_002805223.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666; match to protein family HMM TIGR03586 YP_002805224.1 identified by match to protein family HMM PF02348 YP_002805225.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002805226.1 undetermined role; similar to CarB protein but much smaller YP_002805227.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002805228.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993 YP_002805229.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719 YP_002805231.1 identified by match to protein family HMM PF01973 YP_002805232.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535 YP_002805233.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_002805234.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_002805236.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195 YP_002805237.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_002805239.1 identified by match to protein family HMM PF03646 YP_002805240.1 affects carbohydrate metabolism; has regulatory role in many processes YP_002805241.1 binds to flagellin and appears to stabilize flagellin during flagella assembly YP_002805242.1 identified by match to protein family HMM PF00669; match to protein family HMM TIGR02550 YP_002805243.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492 YP_002805244.1 identified by match to protein family HMM PF05130 YP_002805245.1 identified by match to protein family HMM PF04316 YP_002805246.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002805247.1 identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397 YP_002805248.1 identified by match to protein family HMM PF01584 YP_002805249.1 identified by match to protein family HMM PF00072 YP_002805250.1 identified by match to protein family HMM PF04509 YP_002805251.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194 YP_002805252.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_002805253.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01339 YP_002805254.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_002805255.1 identified by match to protein family HMM PF01584 YP_002805256.1 identified by match to protein family HMM PF03961 YP_002805257.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830 YP_002805258.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_002805259.1 identified by match to protein family HMM PF01063 YP_002805260.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_002805262.1 identified by glimmer; putative YP_002805263.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 YP_002805264.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002805265.1 identified by glimmer; putative YP_002805266.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002805267.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_002805268.1 identified by match to protein family HMM PF01261 YP_002805269.1 identified by match to protein family HMM PF01436 YP_002805270.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002805272.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383 YP_002805273.1 identified by match to protein family HMM PF04309 YP_002805274.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002805275.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002805277.1 identified by match to protein family HMM PF00999 YP_002805279.1 identified by glimmer; putative YP_002805280.1 identified by match to protein family HMM PF01522 YP_002805281.1 identified by glimmer; putative YP_002805282.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002805283.1 identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753 YP_002805284.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002805285.1 identified by match to protein family HMM PF00165 YP_002805286.1 identified by match to protein family HMM PF02016 YP_002805287.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311 YP_002805288.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_002805289.1 identified by match to protein family HMM PF01906 YP_002805290.1 identified by match to protein family HMM PF04892 YP_002805292.1 identified by match to protein family HMM PF00005 YP_002805293.1 identified by match to protein family HMM PF00392 YP_002805294.1 identified by match to protein family HMM PF04892 YP_002805295.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_002805297.1 identified by match to protein family HMM PF02073 YP_002805298.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002805299.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002805300.1 identified by match to protein family HMM PF03323 YP_002805301.1 identified by glimmer; putative YP_002805302.1 identified by match to protein family HMM PF01522 YP_002805303.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_002805306.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002805307.1 identified by match to protein family HMM PF00582 YP_002805308.1 identified by glimmer; putative YP_002805309.1 identified by match to protein family HMM PF00037 YP_002805310.1 catalyzes the formation of glutamate from glutamine YP_002805311.1 identified by match to protein family HMM PF06725 YP_002805312.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002805314.1 identified by match to protein family HMM PF00268 YP_002805315.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002805318.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002805319.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines YP_002805320.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002805321.1 identified by match to protein family HMM PF00156 YP_002805322.1 identified by match to protein family HMM PF02698 YP_002805323.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_002805324.1 identified by match to protein family HMM PF00005 YP_002805326.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_002805327.1 identified by glimmer; putative YP_002805328.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002805329.1 identified by match to protein family HMM PF00293 YP_002805330.1 identified by match to protein family HMM PF01475 YP_002805331.1 identified by glimmer; putative YP_002805332.1 identified by match to protein family HMM PF00704 YP_002805333.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_002805334.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00221 YP_002805335.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002805336.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_002805337.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_002805338.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998 YP_002805339.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002805340.1 identified by match to protein family HMM PF01458 YP_002805341.1 identified by match to protein family HMM PF00005 YP_002805343.1 identified by match to protein family HMM PF01475 YP_002805344.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797 YP_002805345.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_002805346.1 identified by match to protein family HMM PF00301; match to protein family HMM PF00441; match to protein family HMM PF00766; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002805347.1 identified by match to protein family HMM PF00665 YP_002805348.1 identified by match to protein family HMM PF01527 YP_002805349.1 identified by match to protein family HMM PF03609 YP_002805350.1 identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828 YP_002805351.1 identified by match to protein family HMM PF06115 YP_002805352.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_002805353.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_002805355.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_002805356.1 identified by match to protein family HMM PF00941 YP_002805357.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_002805358.1 identified by match to protein family HMM PF00999 YP_002805359.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002805360.1 identified by match to protein family HMM PF04994 YP_002805362.1 identified by glimmer; putative YP_002805363.1 identified by match to protein family HMM PF01510 YP_002805365.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_002805366.1 identified by match to protein family HMM PF00005 YP_002805368.1 identified by match to protein family HMM PF00144 YP_002805369.1 identified by match to protein family HMM PF00440 YP_002805374.1 identified by match to protein family HMM PF00165 YP_002805375.1 identified by glimmer; putative YP_002805376.1 identified by match to protein family HMM PF00583 YP_002805381.1 identified by match to protein family HMM PF04055 YP_002805383.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463 YP_002805384.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002805385.1 identified by glimmer; putative YP_002805386.1 identified by match to protein family HMM PF00884 YP_002805387.1 identified by match to protein family HMM PF01925 YP_002805388.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002805389.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506 YP_002805390.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002805391.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_002805392.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_002805393.1 identified by match to protein family HMM PF00753 YP_002805394.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524 YP_002805396.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002805397.1 involved in de novo purine biosynthesis YP_002805398.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_002805399.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002805400.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_002805401.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002805402.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_002805403.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; match to protein family HMM TIGR03311 YP_002805404.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases YP_002805405.1 in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS YP_002805406.1 with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase YP_002805407.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR03316 YP_002805408.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_002805409.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_002805410.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate YP_002805411.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_002805412.1 identified by match to protein family HMM TIGR03172 YP_002805413.1 identified by match to protein family HMM TIGR03310 YP_002805414.1 identified by match to protein family HMM TIGR03309 YP_002805415.1 identified by match to protein family HMM PF02625 YP_002805417.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032 YP_002805418.1 identified by match to protein family HMM PF00005 YP_002805419.1 identified by match to protein family HMM PF01497 YP_002805420.1 identified by glimmer; putative YP_002805421.1 identified by match to protein family HMM PF00657 YP_002805422.1 identified by match to protein family HMM PF02698 YP_002805423.1 identified by match to protein family HMM PF00860 YP_002805424.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002805426.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002805427.1 identified by match to protein family HMM PF05257 YP_002805428.1 identified by match to protein family HMM PF01546 YP_002805430.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002805431.1 identified by match to protein family HMM PF01910 YP_002805432.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_002805433.1 identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134 YP_002805434.1 identified by match to protein family HMM PF04456 YP_002805436.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002805437.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002805438.1 identified by match to protein family HMM PF00005 YP_002805439.1 identified by match to protein family HMM PF00392 YP_002805441.1 identified by match to protein family HMM PF00037 YP_002805442.1 identified by match to protein family HMM PF00027 YP_002805443.1 identified by match to protein family HMM PF07486 YP_002805444.1 identified by glimmer; putative YP_002805445.1 identified by match to protein family HMM PF07883 YP_002805446.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_002805447.1 identified by match to protein family HMM PF03009 YP_002805449.1 identified by match to protein family HMM PF00282 YP_002805450.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002805451.1 identified by match to protein family HMM PF02591 YP_002805452.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_002805453.1 identified by match to protein family HMM PF04816 YP_002805455.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_002805456.1 synthesizes RNA primers at the replication forks YP_002805457.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_002805458.1 identified by match to protein family HMM TIGR02906 YP_002805459.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002805460.1 identified by match to protein family HMM PF00571; match to protein family HMM PF08279 YP_002805461.1 identified by match to protein family HMM PF00627 YP_002805462.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002805463.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_002805464.1 identified by match to protein family HMM PF01219; match to protein family HMM PF01569 YP_002805465.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_002805466.1 identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277 YP_002805467.1 identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876 YP_002805468.1 identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856 YP_002805469.1 identified by match to protein family HMM PF09424 YP_002805470.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002805471.1 identified by match to protein family HMM PF01230 YP_002805472.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_002805473.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002805474.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_002805475.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002805476.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002805477.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_002805478.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_002805479.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002805480.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002805482.1 identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867 YP_002805483.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination YP_002805484.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002805485.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_002805486.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360 YP_002805488.1 identified by match to protein family HMM PF00122 YP_002805489.1 identified by match to protein family HMM PF07556 YP_002805490.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475 YP_002805491.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_002805492.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476 YP_002805493.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426 YP_002805494.1 identified by match to protein family HMM PF00768 YP_002805495.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_002805496.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_002805497.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002805498.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488 YP_002805499.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_002805500.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_002805501.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002805502.1 involved in the peptidyltransferase reaction during translation YP_002805503.1 identified by match to protein family HMM PF04327 YP_002805504.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_002805505.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_002805507.1 identified by match to protein family HMM PF04055 YP_002805508.1 identified by match to protein family HMM PF02163 YP_002805509.1 identified by match to protein family HMM PF01551 YP_002805510.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_002805511.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_002805512.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_002805513.1 blocks the formation of polar Z-ring septums YP_002805514.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002805515.1 identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426 YP_002805516.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_002805517.1 functions in MreBCD complex in some organisms YP_002805518.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_002805519.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_002805523.1 identified by match to protein family HMM PF02567 YP_002805526.1 identified by match to protein family HMM PF01464 YP_002805527.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_002805528.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_002805529.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002805530.1 identified by match to protein family HMM PF01520; match to protein family HMM PF08239 YP_002805535.1 identified by similarity to GB:ABS41377.1 YP_002805536.1 identified by similarity to GB:AAO35690.1 YP_002805537.1 identified by similarity to GB:AAO35690.1 YP_002805538.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02210 YP_002805542.1 identified by glimmer; putative YP_002805546.1 identified by match to protein family HMM PF00656 YP_002805549.1 identified by glimmer; putative YP_002805550.1 identified by glimmer; putative YP_002805561.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714 YP_002805562.1 identified by match to protein family HMM PF01381 YP_002805563.1 identified by match to protein family HMM PF01381 YP_002805564.1 identified by match to protein family HMM PF01381 YP_002805566.1 identified by similarity to SP:Q51392; match to protein family HMM PF03062 YP_002805567.1 identified by glimmer; putative YP_002805568.1 identified by match to protein family HMM PF00269 YP_002805569.1 identified by glimmer; putative YP_002805570.1 identified by glimmer; putative YP_002805571.1 identified by glimmer; putative YP_002805572.1 identified by glimmer; putative YP_002805573.1 identified by match to protein family HMM PF04246 YP_002805574.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002805575.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002805576.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002805577.1 identified by match to protein family HMM PF00753 YP_002805578.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_002805579.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_002805580.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002805581.1 identified by match to protein family HMM PF01368 YP_002805582.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_002805583.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_002805584.1 identified by match to protein family HMM PF04055 YP_002805585.1 identified by glimmer; putative YP_002805587.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_002805588.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_002805589.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_002805590.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002805591.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002805593.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_002805594.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257 YP_002805595.1 identified by match to protein family HMM PF03130 YP_002805596.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002805597.1 identified by match to protein family HMM PF01909 YP_002805599.1 identified by match to protein family HMM PF00301 YP_002805600.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156 YP_002805601.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_002805602.1 identified by match to protein family HMM PF09560; match to protein family HMM TIGR02832 YP_002805603.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002805604.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839 YP_002805605.1 identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845 YP_002805606.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838 YP_002805607.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore. YP_002805608.1 binds to sigma F preventing its association with RNA polymerase during sporulation YP_002805609.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886 YP_002805610.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002805612.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884 YP_002805613.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_002805614.1 identified by match to protein family HMM PF02397 YP_002805615.1 identified by match to protein family HMM PF01943 YP_002805616.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_002805617.1 identified by match to protein family HMM PF00534 YP_002805618.1 identified by match to protein family HMM PF00534 YP_002805619.1 identified by match to protein family HMM PF04932 YP_002805620.1 identified by match to protein family HMM PF00534 YP_002805621.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_002805622.1 identified by match to protein family HMM PF00534 YP_002805623.1 identified by glimmer; putative YP_002805625.1 identified by match to protein family HMM PF00560 YP_002805626.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943 YP_002805627.1 identified by match to protein family HMM PF00132 YP_002805628.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_002805629.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03446; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002805630.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321 YP_002805631.1 identified by match to protein family HMM PF01520; match to protein family HMM PF07495 YP_002805632.1 identified by match to protein family HMM PF01520; match to protein family HMM PF07495 YP_002805633.1 identified by match to protein family HMM PF01832; match to protein family HMM PF07495 YP_002805634.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_002805635.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002805636.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002805637.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_002805638.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711; match to protein family HMM PF05889 YP_002805639.1 identified by glimmer; putative YP_002805640.1 identified by match to protein family HMM PF01515 YP_002805641.1 identified by match to protein family HMM PF01070; match to protein family HMM PF01180 YP_002805642.1 identified by match to protein family HMM PF04463 YP_002805643.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange YP_002805644.1 identified by match to protein family HMM PF01136 YP_002805646.1 identified by glimmer; putative YP_002805647.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002805648.1 identified by glimmer; putative YP_002805650.1 identified by match to protein family HMM PF05164 YP_002805651.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002805652.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002805653.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_002805654.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254 YP_002805655.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_002805656.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002805657.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_002805658.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_002805659.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002805660.1 identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834 YP_002805663.1 identified by match to protein family HMM PF00005 YP_002805664.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_002805665.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002805667.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002805668.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002805669.1 identified by match to protein family HMM PF00528 YP_002805670.1 identified by match to protein family HMM PF00528 YP_002805671.1 identified by match to protein family HMM PF00496 YP_002805672.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_002805673.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002805674.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002805675.1 identified by similarity to SP:P16524; match to protein family HMM PF00155 YP_002805676.1 identified by match to protein family HMM PF00132; match to protein family HMM PF08503; match to protein family HMM TIGR03532 YP_002805677.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002805679.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764 YP_002805683.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_002805684.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002805685.1 identified by match to protein family HMM PF00583 YP_002805686.1 identified by match to protein family HMM PF00005 YP_002805688.1 identified by match to protein family HMM PF09084 YP_002805689.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002805690.1 identified by match to protein family HMM PF00005 YP_002805691.1 identified by match to protein family HMM PF00528 YP_002805692.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720 YP_002805693.1 identified by match to protein family HMM PF01841 YP_002805694.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_002805695.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002805696.1 identified by match to protein family HMM PF06177 YP_002805697.1 identified by match to protein family HMM PF01613 YP_002805698.1 identified by match to protein family HMM PF01471; match to protein family HMM PF03734 YP_002805700.1 identified by match to protein family HMM PF06865 YP_002805701.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_002805702.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901 YP_002805703.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_002805704.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002805705.1 identified by match to protein family HMM PF00533 YP_002805706.1 identified by glimmer; putative YP_002805707.1 identified by match to protein family HMM PF00092 YP_002805708.1 identified by match to protein family HMM PF07728 YP_002805713.1 identified by similarity to GB:EDK33626.1 YP_002805714.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002805715.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_002805716.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_002805717.1 identified by match to protein family HMM PF01012 YP_002805718.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002805719.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_002805720.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_002805721.1 identified by match to protein family HMM PF00378 YP_002805722.1 identified by glimmer; putative YP_002805723.1 identified by match to protein family HMM PF01541 YP_002805724.1 identified by match to protein family HMM PF00860 YP_002805725.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_002805726.1 identified by glimmer; putative YP_002805727.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002805728.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002805730.1 identified by match to protein family HMM PF03009 YP_002805731.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002805732.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_002805733.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493 YP_002805734.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_002805736.1 identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731 YP_002805738.1 identified by match to protein family HMM PF01475 YP_002805739.1 identified by match to protein family HMM PF01547 YP_002805741.1 identified by match to protein family HMM PF08279 YP_002805743.1 identified by glimmer; putative YP_002805744.1 identified by glimmer; putative YP_002805745.1 identified by match to protein family HMM PF02517 YP_002805746.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002805747.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_002805748.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR02902 YP_002805749.1 binds and unfolds substrates as part of the ClpXP protease YP_002805750.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002805751.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002805752.1 identified by match to protein family HMM PF01261 YP_002805754.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002805755.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_002805756.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+) YP_002805757.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_002805758.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857 YP_002805759.1 involved in the allosteric regulation of aspartate carbamoyltransferase YP_002805760.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002805761.1 identified by similarity to SP:P11568; match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002805763.1 identified by match to protein family HMM PF06050 YP_002805764.1 identified by match to protein family HMM PF06050 YP_002805766.1 identified by match to protein family HMM PF00005 YP_002805767.1 identified by glimmer; putative YP_002805768.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00528 YP_002805769.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative YP_002805770.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative YP_002805775.1 identified by match to protein family HMM PF03773 YP_002805776.1 identified by glimmer; putative YP_002805777.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002805778.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_002805781.1 identified by match to protein family HMM PF00496 YP_002805782.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002805783.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002805784.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_002805785.1 identified by match to protein family HMM PF00375 YP_002805787.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_002805788.1 identified by match to protein family HMM PF00580 YP_002805789.1 identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531 YP_002805790.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002805791.1 identified by match to protein family HMM PF01464 YP_002805792.1 identified by match to protein family HMM PF07495 YP_002805793.1 identified by glimmer; putative YP_002805794.1 identified by match to protein family HMM PF02639 YP_002805795.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_002805797.1 identified by match to protein family HMM PF00440 YP_002805798.1 identified by match to protein family HMM PF00583 YP_002805799.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002805800.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002805802.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00766; match to protein family HMM PF01012 YP_002805803.1 identified by match to protein family HMM PF01012 YP_002805804.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002805805.1 identified by match to protein family HMM PF06050 YP_002805806.1 identified by match to protein family HMM PF06050 YP_002805807.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002805808.1 identified by match to protein family HMM PF02515 YP_002805809.1 identified by match to protein family HMM PF00501 YP_002805810.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002805811.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002805812.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_002805813.1 identified by match to protein family HMM PF01171 YP_002805814.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002805815.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002805816.1 identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906 YP_002805817.1 identified by match to protein family HMM PF09335 YP_002805818.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906 YP_002805819.1 identified by match to protein family HMM PF00730; match to protein family HMM PF07934 YP_002805820.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_002805821.1 identified by match to protein family HMM PF00175 YP_002805822.1 modulates transcription in response to the NADH/NAD(+) redox state YP_002805823.1 identified by match to protein family HMM PF00005 YP_002805824.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002805825.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694 YP_002805826.1 identified by match to protein family HMM PF02554 YP_002805827.1 identified by match to protein family HMM PF05193; match to protein family HMM PF08367 YP_002805828.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_002805829.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002805830.1 identified by match to protein family HMM PF05866 YP_002805832.1 identified by match to protein family HMM PF07992 YP_002805835.1 identified by match to protein family HMM PF01297 YP_002805836.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_002805837.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_002805838.1 identified by match to protein family HMM PF00814 YP_002805839.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_002805840.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002805842.1 identified by match to protein family HMM PF04326 YP_002805844.1 identified by glimmer; putative YP_002805845.1 identified by match to protein family HMM PF01569 YP_002805846.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503 YP_002805847.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002805848.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002805849.1 identified by glimmer; putative YP_002805850.1 identified by match to protein family HMM PF01880; match to protein family HMM PF06397; match to protein family HMM TIGR00319; match to protein family HMM TIGR00320; match to protein family HMM TIGR00332 YP_002805852.1 identified by match to protein family HMM PF00082 YP_002805854.1 identified by match to protein family HMM PF00005 YP_002805857.1 identified by glimmer; putative YP_002805858.1 identified by match to protein family HMM PF04055 YP_002805859.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002805860.1 identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205 YP_002805861.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_002805862.1 identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657 YP_002805863.1 catalyzes the removal of amino acids from the N termini of peptides YP_002805864.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002805866.1 identified by similarity to GB:ABK61386.1 YP_002805867.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_002805868.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases YP_002805869.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002805870.1 identified by match to protein family HMM PF01541 YP_002805872.1 identified by match to protein family HMM PF00005 YP_002805874.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04967; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002805875.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815 YP_002805876.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002805877.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002805879.1 identified by match to protein family HMM PF00005 YP_002805882.1 identified by match to protein family HMM PF05913 YP_002805883.1 identified by match to protein family HMM PF01869 YP_002805884.1 identified by match to protein family HMM PF02255 YP_002805885.1 identified by match to protein family HMM PF02302 YP_002805886.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610; match to protein family HMM PF07728 YP_002805887.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002805888.1 identified by match to protein family HMM PF02056 YP_002805889.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002805890.1 identified by match to protein family HMM PF00589 YP_002805891.1 identified by match to protein family HMM PF02675; match to protein family HMM TIGR03330 YP_002805892.1 identified by glimmer; putative YP_002805893.1 identified by match to protein family HMM PF01861 YP_002805896.1 identified by match to protein family HMM PF05368 YP_002805897.1 identified by match to protein family HMM PF00248 YP_002805898.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002805899.1 identified by match to protein family HMM PF00376 YP_002805900.1 identified by match to protein family HMM PF00383 YP_002805901.1 identified by match to protein family HMM PF01370 YP_002805902.1 identified by match to protein family HMM PF00165 YP_002805903.1 identified by match to protein family HMM PF01872 YP_002805905.1 identified by match to protein family HMM PF04657 YP_002805906.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002805907.1 identified by match to protein family HMM PF00583 YP_002805908.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002805911.1 identified by glimmer; putative YP_002805912.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248 YP_002805913.1 identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_002805914.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_002805915.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_002805916.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_002805917.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_002805918.1 identified by match to protein family HMM PF03668 YP_002805919.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002805920.1 identified by match to protein family HMM PF02811 YP_002805921.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002805922.1 identified by match to protein family HMM PF04307 YP_002805923.1 identified by match to protein family HMM PF01336; match to protein family HMM PF01966 YP_002805924.1 identified by match to protein family HMM PF00905 YP_002805925.1 identified by match to protein family HMM PF01098 YP_002805926.1 identified by match to protein family HMM PF00498 YP_002805927.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002805928.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002805930.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_002805931.1 identified by match to protein family HMM PF02687 YP_002805932.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673 YP_002805933.1 identified by match to protein family HMM PF02588 YP_002805934.1 identified by glimmer; putative YP_002805935.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002805936.1 identified by match to protein family HMM PF00456 YP_002805937.1 identified by match to protein family HMM PF02452 YP_002805939.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_002805941.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_002805942.1 identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 YP_002805944.1 identified by match to protein family HMM PF03553; match to protein family HMM PF06808 YP_002805945.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_002805947.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002805948.1 identified by match to protein family HMM PF00375 YP_002805950.1 identified by match to protein family HMM PF00376; match to protein family HMM PF06445 YP_002805951.1 identified by match to protein family HMM PF02633 YP_002805952.1 identified by match to protein family HMM PF00080 YP_002805953.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_002805954.1 identified by match to protein family HMM PF00923 YP_002805955.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_002805956.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate YP_002805957.1 identified by match to protein family HMM PF03829 YP_002805958.1 identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825 YP_002805959.1 identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821 YP_002805960.1 identified by match to protein family HMM PF06923 YP_002805961.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002805962.1 identified by match to protein family HMM PF04198 YP_002805963.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002805964.1 identified by match to protein family HMM PF01558 YP_002805965.1 identified by match to protein family HMM PF02775 YP_002805966.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA YP_002805967.1 identified by match to protein family HMM PF00037 YP_002805969.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_002805970.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate YP_002805971.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_002805973.1 identified by match to protein family HMM PF07949 YP_002805974.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_002805975.1 identified by match to protein family HMM PF07486 YP_002805976.1 identified by match to protein family HMM PF01134; match to protein family HMM PF07992 YP_002805977.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_002805978.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01975 YP_002805979.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002805981.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_002805982.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229 YP_002805983.1 identified by match to protein family HMM PF00515 YP_002805984.1 identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723 YP_002805985.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid YP_002805986.1 identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883 YP_002805987.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_002805988.1 forms a direct contact with the tRNA during translation YP_002805989.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002805990.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002805991.1 identified by match to protein family HMM PF02361 YP_002805992.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene YP_002805993.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene YP_002805994.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002805995.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002805996.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002805997.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002805998.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002805999.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_002806000.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002806002.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_002806003.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002806004.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002806005.1 late assembly protein YP_002806006.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002806007.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002806008.1 binds 5S rRNA along with protein L5 and L25 YP_002806009.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002806010.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002806011.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_002806012.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002806013.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002806014.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002806015.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002806016.1 one of the stabilizing components for the large ribosomal subunit YP_002806017.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002806018.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002806019.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002806020.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002806021.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002806022.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002806023.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002806024.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002806025.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002806026.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002806027.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002806028.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002806029.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002806030.1 identified by match to protein family HMM PF01248 YP_002806031.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002806032.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002806033.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002806034.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002806035.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002806036.1 binds directly to 23S ribosomal RNA YP_002806037.1 Modulates Rho-dependent transcription termination YP_002806038.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002806039.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_002806040.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002806041.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002806042.1 identified by match to protein family HMM PF05991 YP_002806043.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_002806044.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_002806045.1 identified by match to protein family HMM PF00636 YP_002806046.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002806047.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01127 YP_002806048.1 identified by match to protein family HMM PF03129; match to protein family HMM PF04073 YP_002806049.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_002806050.1 identified by match to protein family HMM PF01850; match to protein family HMM PF01938 YP_002806052.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_002806053.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002806054.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002806055.1 identified by match to protein family HMM PF00217 YP_002806056.1 identified by match to protein family HMM PF02151 YP_002806057.1 identified by match to protein family HMM PF05848 YP_002806059.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002806061.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002806063.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002806064.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_002806065.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002806066.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002806067.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002806069.1 identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_002806070.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_002806071.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_002806072.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_002806073.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_002806074.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_002806075.1 identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865 YP_002806076.1 identified by match to protein family HMM PF00575 YP_002806077.1 identified by match to protein family HMM PF04977 YP_002806078.1 identified by match to protein family HMM PF09578; match to protein family HMM TIGR02893 YP_002806079.1 identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892 YP_002806080.1 identified by match to protein family HMM PF01479 YP_002806081.1 identified by match to protein family HMM PF00216 YP_002806082.1 identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444 YP_002806083.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002806084.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851 YP_002806085.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_002806086.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_002806087.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002806088.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_002806089.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002806090.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002806091.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002806092.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_002806093.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus YP_002806094.1 identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743 YP_002806095.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002806097.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906 YP_002806098.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002806100.1 catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate YP_002806101.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_002806104.1 identified by match to protein family HMM PF04055 YP_002806105.1 identified by match to protein family HMM PF00015; match to protein family HMM PF07700 YP_002806106.1 identified by match to protein family HMM PF01381 YP_002806108.1 identified by match to protein family HMM PF00160 YP_002806109.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002806110.1 identified by match to protein family HMM PF00120 YP_002806112.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002806113.1 identified by match to protein family HMM PF00753 YP_002806115.1 identified by match to protein family HMM PF02810 YP_002806116.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_002806117.1 identified by match to protein family HMM PF07690 YP_002806118.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF03358 YP_002806119.1 identified by match to protein family HMM PF00440 YP_002806120.1 identified by match to protein family HMM PF00165 YP_002806121.1 identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500 YP_002806122.1 identified by match to protein family HMM PF00881 YP_002806124.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055 YP_002806126.1 catalyzes the formation of biotin from dethiobiotin and sulfur YP_002806127.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_002806128.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231 YP_002806129.1 identified by match to protein family HMM PF00474 YP_002806130.1 identified by match to protein family HMM PF00534 YP_002806131.1 identified by match to protein family HMM PF02811 YP_002806132.1 identified by match to protein family HMM PF08761 YP_002806133.1 identified by match to protein family HMM PF04657 YP_002806134.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002806135.1 identified by match to protein family HMM PF00082 YP_002806136.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002806137.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002806138.1 identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513 YP_002806139.1 identified by match to protein family HMM TIGR00515 YP_002806140.1 identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514 YP_002806141.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_002806142.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_002806143.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002806144.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002806145.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_002806146.1 identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151 YP_002806147.1 identified by match to protein family HMM PF00550 YP_002806148.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747 YP_002806149.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_002806150.1 identified by match to protein family HMM PF03060 YP_002806151.1 identified by match to protein family HMM PF01551 YP_002806152.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002806153.1 acts to load the DnaB helicase onto the initiation site during DNA replication YP_002806154.1 identified by match to protein family HMM PF03618 YP_002806156.1 identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275 YP_002806157.1 identified by match to protein family HMM PF01643 YP_002806159.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002806161.1 identified by glimmer; putative YP_002806162.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002806163.1 unwinds double stranded DNA YP_002806164.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR02903 YP_002806165.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002806166.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002806169.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002806170.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_002806171.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002806172.1 identified by match to protein family HMM PF06050 YP_002806173.1 identified by match to protein family HMM PF06107 YP_002806174.1 identified by match to protein family HMM PF00924 YP_002806176.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977 YP_002806177.1 identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872 YP_002806178.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_002806179.1 identified by glimmer; putative YP_002806181.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_002806182.1 identified by match to protein family HMM PF01656 YP_002806183.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_002806184.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002806185.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002806186.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002806187.1 identified by match to protein family HMM PF01424 YP_002806188.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_002806189.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_002806190.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_002806191.1 in Escherichia coli transcription of this gene is enhanced by polyamines