-- dump date 20140619_043018 -- class Genbank::CDS -- table cds_note -- id note YP_001382411.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001382412.1 binds the polymerase to DNA and acts as a sliding clamp YP_001382413.1 identified by match to protein family HMM PF01479; match to protein family HMM TIGR02988 YP_001382414.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_001382416.1 negatively supercoils closed circular double-stranded DNA YP_001382417.1 negatively supercoils closed circular double-stranded DNA YP_001382419.1 identified by match to protein family HMM PF02829; match to protein family HMM PF08279 YP_001382420.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04015 YP_001382421.1 identified by match to protein family HMM PF03699 YP_001382422.1 identified by match to protein family HMM PF03734 YP_001382423.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_001382424.1 identified by match to protein family HMM PF07892 YP_001382425.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001382426.1 identified by Glimmer3 YP_001382427.1 identified by match to protein family HMM PF00005 YP_001382431.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001382432.1 identified by match to protein family HMM PF01163; match to protein family HMM PF03109 YP_001382434.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001382435.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine YP_001382436.1 identified by match to protein family HMM PF00383 YP_001382437.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_001382438.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_001382439.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001382441.1 identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862 YP_001382442.1 Regulatory factor involved in maltose metabolism YP_001382443.1 identified by match to protein family HMM PF00293 YP_001382445.1 identified by match to protein family HMM PF00037 YP_001382447.1 identified by match to protein family HMM PF00899 YP_001382448.1 identified by match to protein family HMM PF07690 YP_001382449.1 identified by match to protein family HMM PF00583 YP_001382450.1 identified by match to protein family HMM PF03167 YP_001382451.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001382453.1 identified by match to protein family HMM PF00639 YP_001382454.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_001382455.1 identified by match to protein family HMM PF02016 YP_001382456.1 identified by match to protein family HMM PF01544 YP_001382460.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711 YP_001382462.1 identified by match to protein family HMM PF06153 YP_001382463.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_001382464.1 identified by match to protein family HMM PF04468 YP_001382466.1 identified by match to protein family HMM PF00037 YP_001382468.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_001382469.1 identified by match to protein family HMM PF00877 YP_001382470.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_001382471.1 identified by match to protein family HMM PF08876 YP_001382472.1 identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078 YP_001382473.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_001382474.1 identified by Glimmer3 YP_001382475.1 identified by match to protein family HMM PF01522 YP_001382477.1 identified by match to protein family HMM PF07670 YP_001382478.1 identified by match to protein family HMM PF07670 YP_001382479.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001382480.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_001382481.1 identified by match to protein family HMM PF01047 YP_001382482.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001382483.1 identified by match to protein family HMM PF04286 YP_001382484.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_001382485.1 identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501 YP_001382486.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334 YP_001382487.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001382491.1 identified by match to protein family HMM TIGR01730 YP_001382492.1 identified by match to protein family HMM PF00005 YP_001382493.1 identified by match to protein family HMM PF02687 YP_001382495.1 identified by match to protein family HMM PF00037 YP_001382496.1 identified by Glimmer3 YP_001382497.1 identified by Glimmer3 YP_001382498.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001382499.1 identified by match to protein family HMM PF02308 YP_001382500.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001382501.1 identified by match to protein family HMM TIGR02491 YP_001382502.1 identified by Glimmer3 YP_001382504.1 identified by match to protein family HMM PF03551 YP_001382506.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_001382507.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001382509.1 identified by match to protein family HMM PF00483 YP_001382510.1 identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299 YP_001382511.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268 YP_001382513.1 identified by match to protein family HMM PF04055 YP_001382514.1 identified by match to protein family HMM PF01547 YP_001382515.1 identified by match to protein family HMM PF00534 YP_001382516.1 identified by match to protein family HMM TIGR02906 YP_001382517.1 identified by Glimmer3 YP_001382519.1 identified by match to protein family HMM TIGR02906 YP_001382520.1 identified by match to protein family HMM PF00534 YP_001382521.1 identified by match to protein family HMM TIGR02906 YP_001382522.1 identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855 YP_001382523.1 identified by match to protein family HMM PF06257 YP_001382524.1 identified by match to protein family HMM PF01476 YP_001382525.1 identified by Glimmer3 YP_001382526.1 identified by match to protein family HMM PF03575; match to protein family HMM TIGR02069 YP_001382527.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_001382528.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001382529.1 identified by Glimmer3 YP_001382530.1 identified by match to protein family HMM PF03323 YP_001382531.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001382532.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_001382533.1 identified by match to protein family HMM TIGR02837 YP_001382534.1 identified by match to protein family HMM PF04101; match to protein family HMM PF06925 YP_001382535.1 identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889 YP_001382536.1 identified by match to protein family HMM PF02568 YP_001382537.1 identified by match to protein family HMM PF09148 YP_001382539.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001382541.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001382542.1 identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105 YP_001382543.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_001382544.1 identified by match to protein family HMM PF07136 YP_001382545.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387 YP_001382546.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001382548.1 identified by match to protein family HMM PF02535 YP_001382549.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_001382550.1 identified by match to protein family HMM PF01451 YP_001382551.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_001382552.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_001382553.1 identified by match to protein family HMM PF00383 YP_001382554.1 identified by match to protein family HMM PF00953 YP_001382555.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_001382557.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_001382558.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_001382559.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel YP_001382560.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001382561.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001382562.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_001382563.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001382564.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_001382566.1 identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870 YP_001382567.1 identified by match to protein family HMM PF01551 YP_001382568.1 identified by match to protein family HMM TIGR02844 YP_001382569.1 identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904 YP_001382570.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_001382571.1 identified by match to protein family HMM PF01171 YP_001382572.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001382573.1 identified by match to protein family HMM TIGR01448 YP_001382575.1 identified by match to protein family HMM PF00156 YP_001382576.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_001382577.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_001382578.1 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA YP_001382579.1 identified by match to protein family HMM PF04389 YP_001382580.1 identified by match to protein family HMM PF00575 YP_001382584.1 identified by match to protein family HMM PF00149 YP_001382585.1 identified by match to protein family HMM PF01022 YP_001382586.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF01206; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_001382588.1 identified by match to protein family HMM PF04607 YP_001382589.1 identified by Glimmer3 YP_001382590.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001382591.1 identified by match to protein family HMM PF00581 YP_001382593.1 identified by match to protein family HMM PF00226; match to protein family HMM PF07719 YP_001382595.1 identified by match to protein family HMM PF01928 YP_001382597.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859 YP_001382599.1 identified by match to protein family HMM PF04239 YP_001382600.1 identified by match to protein family HMM PF00485 YP_001382601.1 identified by Glimmer3 YP_001382602.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_001382603.1 identified by match to protein family HMM PF00571 YP_001382604.1 similar to YegS from E. coli YP_001382606.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08497 YP_001382607.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03448; match to protein family HMM PF05239 YP_001382608.1 identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869 YP_001382609.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_001382610.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_001382611.1 identified by match to protein family HMM PF00037; match to protein family HMM PF08331 YP_001382612.1 identified by match to protein family HMM PF01553 YP_001382613.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_001382614.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949 YP_001382615.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00177; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_001382617.1 identified by match to protein family HMM PF05343 YP_001382618.1 identified by match to protein family HMM PF04294 YP_001382619.1 identified by match to protein family HMM PF04294; match to protein family HMM PF07501 YP_001382620.1 identified by match to protein family HMM PF04055 YP_001382621.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_001382622.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001382623.1 identified by match to protein family HMM PF02608 YP_001382624.1 identified by match to protein family HMM PF00005 YP_001382625.1 identified by match to protein family HMM PF02653 YP_001382626.1 identified by match to protein family HMM PF02653 YP_001382627.1 identified by match to protein family HMM PF01522 YP_001382628.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_001382629.1 identified by match to protein family HMM PF04198 YP_001382630.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_001382631.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001382632.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001382633.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_001382634.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001382635.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_001382636.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_001382637.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001382638.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001382639.1 identified by match to protein family HMM PF00375 YP_001382640.1 identified by match to protein family HMM PF01565; match to protein family HMM PF08031 YP_001382641.1 identified by Glimmer3 YP_001382642.1 identified by Glimmer3 YP_001382643.1 identified by Glimmer3 YP_001382644.1 identified by match to protein family HMM PF00282 YP_001382645.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001382646.1 identified by match to protein family HMM PF01569 YP_001382647.1 identified by match to protein family HMM PF07883 YP_001382649.1 identified by match to protein family HMM PF00390; match to protein family HMM PF01262; match to protein family HMM PF03949 YP_001382650.1 transports degraded pectin products into the bacterial cell YP_001382651.1 identified by match to protein family HMM PF02518 YP_001382652.1 identified by match to protein family HMM PF00072 YP_001382653.1 identified by match to protein family HMM PF00324 YP_001382654.1 identified by match to protein family HMM PF00753 YP_001382655.1 identified by match to protein family HMM PF00583 YP_001382656.1 identified by match to protein family HMM PF00383 YP_001382657.1 identified by match to protein family HMM PF00583 YP_001382658.1 identified by match to protein family HMM PF01872 YP_001382659.1 3'-5' exonuclease of DNA polymerase III YP_001382660.1 identified by Glimmer3 YP_001382661.1 identified by match to protein family HMM PF00857 YP_001382662.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_001382663.1 identified by match to protein family HMM PF00941 YP_001382664.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_001382665.1 identified by Glimmer3 YP_001382666.1 identified by match to protein family HMM PF02683 YP_001382667.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534 YP_001382668.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001382669.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001382670.1 identified by match to protein family HMM PF02056 YP_001382671.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378 YP_001382672.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001382673.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001382674.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_001382675.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001382676.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001382677.1 identified by match to protein family HMM PF00005 YP_001382678.1 identified by match to protein family HMM PF02687 YP_001382679.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_001382680.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_001382681.1 identified by match to protein family HMM PF02056 YP_001382682.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_001382683.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001382685.1 identified by match to protein family HMM PF00313 YP_001382686.1 identified by match to protein family HMM PF06210 YP_001382687.1 identified by match to protein family HMM PF02082 YP_001382688.1 identified by match to protein family HMM PF01323 YP_001382690.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001382691.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_001382692.1 identified by match to protein family HMM PF02056 YP_001382693.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_001382694.1 identified by match to protein family HMM PF00920 YP_001382695.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_001382696.1 identified by match to protein family HMM PF00294 YP_001382697.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178 YP_001382698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001382699.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001382700.1 identified by match to protein family HMM PF00535 YP_001382701.1 identified by match to protein family HMM PF04138 YP_001382702.1 identified by match to protein family HMM PF02366 YP_001382703.1 identified by match to protein family HMM PF00165 YP_001382704.1 identified by match to protein family HMM PF01497 YP_001382705.1 identified by match to protein family HMM PF01032 YP_001382706.1 identified by match to protein family HMM PF00005 YP_001382707.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001382708.1 identified by match to protein family HMM PF00165 YP_001382709.1 identified by similarity to SP:P37580; match to protein family HMM PF01497 YP_001382710.1 identified by Glimmer3 YP_001382711.1 identified by match to protein family HMM PF00165 YP_001382712.1 identified by match to protein family HMM PF01497 YP_001382713.1 identified by match to protein family HMM PF01032 YP_001382714.1 identified by match to protein family HMM PF01032 YP_001382715.1 identified by match to protein family HMM PF00005 YP_001382716.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001382717.1 identified by match to protein family HMM PF01325 YP_001382718.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_001382719.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_001382720.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001382721.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001382722.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell YP_001382723.1 identified by match to protein family HMM PF00005 YP_001382724.1 identified by match to protein family HMM PF02687 YP_001382725.1 identified by Glimmer3 YP_001382726.1 identified by match to protein family HMM PF03788 YP_001382727.1 identified by match to protein family HMM PF04172 YP_001382729.1 identified by match to protein family HMM PF04055 YP_001382730.1 identified by match to protein family HMM PF08903 YP_001382733.1 identified by match to protein family HMM PF04647 YP_001382735.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00254 YP_001382736.1 identified by match to protein family HMM PF00583 YP_001382738.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_001382740.1 identified by match to protein family HMM PF04647 YP_001382741.1 identified by Glimmer3 YP_001382742.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_001382743.1 identified by match to protein family HMM PF01171 YP_001382744.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001382745.1 identified by match to protein family HMM PF00324 YP_001382746.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_001382747.1 identified by match to protein family HMM PF00171; match to protein family HMM PF00465 YP_001382752.1 identified by match to protein family HMM PF01569 YP_001382753.1 identified by match to protein family HMM PF01522 YP_001382754.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001382755.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001382757.1 identified by match to protein family HMM PF06962 YP_001382758.1 identified by match to protein family HMM PF09335 YP_001382759.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM PF05228; match to protein family HMM TIGR00254 YP_001382761.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001382762.1 identified by match to protein family HMM PF01966 YP_001382763.1 identified by match to protein family HMM PF00999 YP_001382764.1 identified by match to protein family HMM PF00266 YP_001382765.1 identified by match to protein family HMM PF03601 YP_001382767.1 identified by match to protein family HMM PF00486 YP_001382768.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001382769.1 identified by match to protein family HMM PF00474 YP_001382770.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945 YP_001382771.1 identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946 YP_001382772.1 identified by match to protein family HMM PF04205; match to protein family HMM TIGR01947 YP_001382773.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_001382774.1 identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943 YP_001382775.1 involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate YP_001382776.1 identified by match to protein family HMM PF04122 YP_001382777.1 identified by match to protein family HMM PF07456 YP_001382778.1 identified by match to protein family HMM PF07009 YP_001382779.1 identified by match to protein family HMM PF02424 YP_001382780.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001382781.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_001382782.1 identified by match to protein family HMM PF06803 YP_001382783.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_001382784.1 identified by Glimmer3 YP_001382785.1 identified by match to protein family HMM PF00515; match to protein family HMM PF01381 YP_001382786.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001382787.1 identified by Glimmer3 YP_001382788.1 identified by similarity to GB:AAP09991.1 YP_001382789.1 identified by Glimmer3 YP_001382790.1 identified by match to protein family HMM PF01965 YP_001382791.1 identified by Glimmer3 YP_001382793.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346 YP_001382794.1 identified by match to protein family HMM PF07685 YP_001382795.1 identified by match to protein family HMM PF08245; match to protein family HMM PF08353 YP_001382796.1 identified by match to protein family HMM PF01238 YP_001382798.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell YP_001382799.1 identified by match to protein family HMM PF00753 YP_001382800.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_001382801.1 identified by match to protein family HMM PF00682 YP_001382802.1 Catalyzes the conversion of citrate to isocitrate YP_001382803.1 identified by match to protein family HMM PF00180 YP_001382804.1 identified by match to protein family HMM PF00005 YP_001382805.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03606 YP_001382806.1 identified by match to protein family HMM PF04070 YP_001382807.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_001382808.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001382809.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_001382810.1 identified by match to protein family HMM TIGR02773 YP_001382812.1 identified by match to protein family HMM PF00005 YP_001382813.1 identified by similarity to GB:AAS44016.1 YP_001382815.1 identified by match to protein family HMM PF04055 YP_001382816.1 identified by Glimmer3 YP_001382817.1 identified by Glimmer3 YP_001382818.1 identified by Glimmer3 YP_001382819.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001382820.1 identified by Glimmer3 YP_001382821.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001382823.1 identified by match to protein family HMM PF00440 YP_001382824.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_001382825.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001382826.1 identified by match to protein family HMM PF01155 YP_001382828.1 identified by Glimmer3 YP_001382829.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785 YP_001382830.1 identified by match to protein family HMM PF00015 YP_001382831.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_001382832.1 identified by match to protein family HMM PF01734 YP_001382833.1 identified by match to protein family HMM PF00753 YP_001382834.1 identified by match to protein family HMM PF00903 YP_001382835.1 identified by Glimmer3 YP_001382836.1 identified by match to protein family HMM PF04122 YP_001382837.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001382838.1 identified by match to protein family HMM PF00497 YP_001382839.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001382840.1 identified by match to protein family HMM PF00563; match to protein family HMM PF08668 YP_001382841.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_001382842.1 identified by match to protein family HMM PF02110; match to protein family HMM TIGR00694 YP_001382843.1 identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097 YP_001382844.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001382845.1 identified by match to protein family HMM PF01094 YP_001382846.1 identified by match to protein family HMM PF02653 YP_001382847.1 identified by match to protein family HMM PF02653 YP_001382848.1 identified by match to protein family HMM PF00005 YP_001382849.1 identified by match to protein family HMM PF00005 YP_001382850.1 identified by match to protein family HMM PF02596 YP_001382851.1 identified by match to protein family HMM PF06738 YP_001382853.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001382854.1 identified by match to protein family HMM PF04011 YP_001382855.1 identified by match to protein family HMM PF04536 YP_001382856.1 identified by match to protein family HMM PF04536 YP_001382857.1 identified by match to protein family HMM PF00293 YP_001382858.1 identified by Glimmer3 YP_001382860.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001382863.1 identified by Glimmer3 YP_001382864.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619 YP_001382866.1 identified by match to protein family HMM PF00293 YP_001382867.1 identified by match to protein family HMM PF02588 YP_001382868.1 identified by match to protein family HMM PF01022 YP_001382869.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_001382870.1 identified by Glimmer3 YP_001382874.1 identified by match to protein family HMM PF02562 YP_001382877.1 identified by Glimmer3 YP_001382880.1 identified by match to protein family HMM PF02624 YP_001382881.1 identified by match to protein family HMM PF02517 YP_001382883.1 identified by match to protein family HMM PF00005 YP_001382884.1 identified by match to protein family HMM PF01061 YP_001382885.1 identified by match to protein family HMM PF01061 YP_001382886.1 identified by match to protein family HMM PF02163 YP_001382887.1 identified by Glimmer3 YP_001382888.1 identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600 YP_001382890.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_001382892.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_001382893.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001382894.1 identified by match to protein family HMM PF00072 YP_001382895.1 identified by match to protein family HMM PF00877; match to protein family HMM PF05257; match to protein family HMM PF06347; match to protein family HMM PF08239 YP_001382896.1 identified by match to protein family HMM PF00561 YP_001382897.1 identified by match to protein family HMM PF00072 YP_001382898.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001382899.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001382900.1 identified by match to protein family HMM PF00072 YP_001382901.1 identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 YP_001382902.1 identified by match to protein family HMM PF06733 YP_001382904.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02080; match to protein family HMM PF08279 YP_001382905.1 identified by match to protein family HMM PF01262 YP_001382906.1 identified by match to protein family HMM PF06874 YP_001382907.1 identified by Glimmer3 YP_001382908.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_001382909.1 identified by Glimmer3 YP_001382910.1 identified by Glimmer3 YP_001382911.1 identified by match to protein family HMM PF02777 YP_001382912.1 identified by match to protein family HMM PF00753 YP_001382915.1 identified by Glimmer3 YP_001382916.1 identified by match to protein family HMM PF01037 YP_001382918.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_001382919.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_001382920.1 identified by match to protein family HMM PF00132 YP_001382921.1 identified by match to protein family HMM PF00753 YP_001382922.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517 YP_001382923.1 identified by match to protein family HMM PF02417 YP_001382924.1 identified by match to protein family HMM PF02417 YP_001382925.1 identified by match to protein family HMM PF02452 YP_001382926.1 identified by match to protein family HMM PF03885 YP_001382927.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001382928.1 identified by match to protein family HMM PF01957 YP_001382929.1 identified by match to protein family HMM PF01145 YP_001382930.1 identified by match to protein family HMM PF02517 YP_001382931.1 identified by match to protein family HMM PF00557; match to protein family HMM PF05195 YP_001382933.1 identified by match to protein family HMM PF01381 YP_001382934.1 identified by match to protein family HMM PF00583 YP_001382935.1 identified by match to protein family HMM PF04324 YP_001382936.1 identified by Glimmer3 YP_001382937.1 identified by Glimmer3 YP_001382939.1 identified by Glimmer3 YP_001382940.1 identified by match to protein family HMM PF02554 YP_001382942.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001382943.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220 YP_001382944.1 identified by match to protein family HMM TIGR02357 YP_001382945.1 identified by Glimmer3 YP_001382946.1 identified by Glimmer3 YP_001382947.1 identified by match to protein family HMM PF02810 YP_001382948.1 identified by match to protein family HMM PF00392 YP_001382949.1 identified by match to protein family HMM PF00005 YP_001382951.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187 YP_001382952.1 identified by match to protein family HMM PF00528 YP_001382953.1 identified by match to protein family HMM PF00528; match to protein family HMM PF01547 YP_001382954.1 identified by match to protein family HMM PF00165 YP_001382955.1 identified by match to protein family HMM PF00375 YP_001382956.1 identified by Glimmer3 YP_001382957.1 identified by match to protein family HMM PF01966 YP_001382958.1 identified by Glimmer3 YP_001382959.1 identified by Glimmer3 YP_001382960.1 identified by match to protein family HMM PF02517 YP_001382961.1 identified by match to protein family HMM PF00805 YP_001382962.1 identified by Glimmer3 YP_001382963.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_001382964.1 identified by Glimmer3 YP_001382965.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_001382966.1 identified by Glimmer3 YP_001382967.1 identified by Glimmer3 YP_001382968.1 identified by Glimmer3 YP_001382969.1 identified by Glimmer3 YP_001382970.1 identified by match to protein family HMM PF04055 YP_001382971.1 identified by Glimmer3 YP_001382973.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463 YP_001382975.1 identified by match to protein family HMM PF00583 YP_001382976.1 identified by match to protein family HMM PF02687 YP_001382977.1 identified by match to protein family HMM PF00005 YP_001382979.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001382981.1 identified by Glimmer3 YP_001382982.1 identified by match to protein family HMM PF00884 YP_001382983.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001382984.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804 YP_001382985.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001382986.1 identified by match to protein family HMM PF03551 YP_001382988.1 identified by match to protein family HMM PF04397 YP_001382990.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_001382991.1 identified by match to protein family HMM PF02517 YP_001382992.1 identified by match to protein family HMM PF01381 YP_001382995.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001382996.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001382997.1 identified by match to protein family HMM PF02557 YP_001382998.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001382999.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001383001.1 identified by match to protein family HMM PF00072 YP_001383002.1 identified by match to protein family HMM PF02518 YP_001383003.1 identified by match to protein family HMM PF01098 YP_001383004.1 identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001383005.1 identified by Glimmer3 YP_001383006.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001383007.1 identified by match to protein family HMM PF00302 YP_001383008.1 identified by match to protein family HMM PF00440 YP_001383009.1 identified by match to protein family HMM PF00583 YP_001383010.1 identified by match to protein family HMM PF01588; match to protein family HMM TIGR02222 YP_001383011.1 identified by match to protein family HMM PF00165 YP_001383012.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001383013.1 identified by match to protein family HMM TIGR00277 YP_001383014.1 identified by match to protein family HMM PF04397 YP_001383015.1 identified by match to protein family HMM PF00005 YP_001383016.1 identified by Glimmer3 YP_001383017.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_001383018.1 identified by match to protein family HMM PF00488 YP_001383019.1 identified by Glimmer3 YP_001383020.1 identified by match to protein family HMM PF01243 YP_001383021.1 identified by match to protein family HMM PF04304 YP_001383022.1 identified by match to protein family HMM PF01243 YP_001383024.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001383027.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001383028.1 identified by match to protein family HMM PF02915 YP_001383029.1 identified by match to protein family HMM PF01047 YP_001383030.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001383032.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001383033.1 identified by match to protein family HMM PF08011 YP_001383034.1 identified by match to protein family HMM PF02698 YP_001383035.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_001383036.1 identified by match to protein family HMM PF00293 YP_001383037.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001383038.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995 YP_001383039.1 identified by match to protein family HMM PF02811 YP_001383040.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001383041.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_001383042.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04405 YP_001383043.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04282 YP_001383044.1 identified by Glimmer3 YP_001383045.1 identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210 YP_001383049.1 identified by Glimmer3 YP_001383050.1 identified by Glimmer3 YP_001383051.1 identified by match to protein family HMM PF00753 YP_001383052.1 identified by match to protein family HMM PF02653 YP_001383053.1 identified by match to protein family HMM PF00005 YP_001383054.1 identified by match to protein family HMM PF04392 YP_001383055.1 identified by Glimmer3 YP_001383057.1 identified by Glimmer3 YP_001383058.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001383059.1 identified by match to protein family HMM PF01207 YP_001383060.1 identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462 YP_001383062.1 identified by match to protein family HMM PF02384 YP_001383063.1 identified by match to protein family HMM PF01420 YP_001383064.1 identified by Glimmer3 YP_001383066.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851 YP_001383067.1 identified by match to protein family HMM PF00580 YP_001383068.1 identified by Glimmer3 YP_001383069.1 identified by match to protein family HMM PF00165 YP_001383070.1 identified by match to protein family HMM PF01497 YP_001383071.1 identified by match to protein family HMM PF01032 YP_001383072.1 identified by match to protein family HMM PF01032 YP_001383073.1 identified by match to protein family HMM PF00005 YP_001383074.1 identified by match to protein family HMM PF00142 YP_001383075.1 identified by Glimmer3 YP_001383076.1 identified by Glimmer3 YP_001383077.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001383078.1 identified by Glimmer3 YP_001383080.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_001383081.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_001383082.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_001383083.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_001383084.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_001383085.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_001383086.1 identified by Glimmer3 YP_001383087.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_001383088.1 identified by Glimmer3 YP_001383092.1 identified by match to protein family HMM PF00376 YP_001383093.1 identified by match to protein family HMM PF00005 YP_001383094.1 identified by match to protein family HMM PF01061 YP_001383095.1 identified by match to protein family HMM PF00005 YP_001383097.1 identified by match to protein family HMM PF07505 YP_001383098.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_001383099.1 identified by match to protein family HMM PF00892 YP_001383100.1 identified by match to protein family HMM PF04994 YP_001383101.1 identified by match to protein family HMM PF00583 YP_001383102.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545 YP_001383103.1 identified by match to protein family HMM PF00015 YP_001383105.1 identified by Glimmer3 YP_001383106.1 identified by match to protein family HMM PF00005 YP_001383107.1 identified by Glimmer3 YP_001383108.1 identified by match to protein family HMM PF01965 YP_001383109.1 identified by match to protein family HMM PF00291 YP_001383110.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_001383111.1 identified by match to protein family HMM PF01053; match to protein family HMM PF01212 YP_001383112.1 identified by match to protein family HMM PF01209; match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001383113.1 identified by Glimmer3 YP_001383114.1 identified by match to protein family HMM PF00704 YP_001383115.1 identified by match to protein family HMM PF00403 YP_001383117.1 identified by match to protein family HMM PF06172 YP_001383118.1 identified by Glimmer3 YP_001383119.1 identified by match to protein family HMM PF01381 YP_001383120.1 identified by match to protein family HMM PF01381 YP_001383121.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_001383122.1 identified by match to protein family HMM TIGR02937 YP_001383123.1 identified by match to protein family HMM TIGR02436 YP_001383125.1 identified by Glimmer3 YP_001383128.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510 YP_001383131.1 identified by Glimmer3 YP_001383133.1 identified by Glimmer3 YP_001383135.1 identified by match to protein family HMM PF01476; match to protein family HMM PF07485 YP_001383136.1 identified by similarity to SP:Q01257; match to protein family HMM PF01451 YP_001383137.1 identified by match to protein family HMM TIGR01909 YP_001383138.1 identified by match to protein family HMM PF01022 YP_001383139.1 identified by match to protein family HMM PF06953 YP_001383140.1 identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345 YP_001383141.1 identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832 YP_001383142.1 Selenoprotein. identified by similarity to GB:ABB33009.1; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001383143.1 identified by match to protein family HMM PF00300 YP_001383144.1 identified by match to protein family HMM PF00440 YP_001383145.1 identified by Glimmer3 YP_001383147.1 identified by match to protein family HMM PF01381 YP_001383148.1 identified by Glimmer3 YP_001383149.1 identified by match to protein family HMM PF00005 YP_001383152.1 identified by match to protein family HMM PF00303 YP_001383153.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001383155.1 identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097 YP_001383156.1 identified by Glimmer3 YP_001383157.1 identified by match to protein family HMM PF06695 YP_001383158.1 identified by match to protein family HMM PF00005 YP_001383160.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001383161.1 identified by match to protein family HMM PF00005 YP_001383163.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_001383164.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001383167.1 identified by match to protein family HMM PF00005 YP_001383168.1 identified by match to protein family HMM PF02687 YP_001383169.1 identified by Glimmer3 YP_001383170.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001383171.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001383172.1 identified by match to protein family HMM PF06555 YP_001383173.1 identified by match to protein family HMM TIGR02861 YP_001383175.1 identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 YP_001383176.1 identified by match to protein family HMM PF00581 YP_001383177.1 identified by Glimmer3 YP_001383178.1 identified by Glimmer3 YP_001383179.1 identified by Glimmer3 YP_001383180.1 identified by Glimmer3 YP_001383181.1 identified by Glimmer3 YP_001383182.1 identified by match to protein family HMM PF00669 YP_001383183.1 identified by Glimmer3 YP_001383185.1 identified by match to protein family HMM PF03505 YP_001383186.1 identified by match to protein family HMM PF05588 YP_001383187.1 identified by match to protein family HMM PF00652 YP_001383188.1 identified by similarity to PIR:S68219; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR03209 YP_001383189.1 identified by match to protein family HMM PF01742; match to protein family HMM PF07953; match to protein family HMM PF08470 YP_001383190.1 identified by similarity to SP:P30996; match to protein family HMM PF01742; match to protein family HMM PF07951; match to protein family HMM PF07952; match to protein family HMM PF07953 YP_001383191.1 identified by Glimmer3 YP_001383192.1 identified by match to protein family HMM PF01979 YP_001383193.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_001383194.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_001383195.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00496 YP_001383196.1 identified by match to protein family HMM PF04023 YP_001383197.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162 YP_001383198.1 identified by match to protein family HMM PF04294; match to protein family HMM PF07501 YP_001383199.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_001383203.1 identified by match to protein family HMM PF07875 YP_001383205.1 identified by match to protein family HMM PF01242 YP_001383206.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_001383208.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_001383209.1 identified by match to protein family HMM PF00011 YP_001383210.1 identified by match to protein family HMM PF00376; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001383211.1 identified by match to protein family HMM PF01041 YP_001383212.1 identified by match to protein family HMM PF01041 YP_001383213.1 identified by match to protein family HMM PF01243 YP_001383214.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02954 YP_001383215.1 identified by Glimmer3 YP_001383217.1 identified by match to protein family HMM PF00561 YP_001383218.1 identified by match to protein family HMM PF03596 YP_001383219.1 identified by match to protein family HMM PF04463 YP_001383220.1 identified by match to protein family HMM PF01037 YP_001383221.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_001383223.1 identified by match to protein family HMM PF00005 YP_001383224.1 identified by match to protein family HMM PF01381 YP_001383226.1 identified by match to protein family HMM PF00561 YP_001383227.1 identified by match to protein family HMM PF00583 YP_001383228.1 identified by match to protein family HMM PF00805 YP_001383229.1 identified by match to protein family HMM PF02525 YP_001383230.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_001383231.1 identified by match to protein family HMM PF01022 YP_001383232.1 identified by match to protein family HMM PF00376 YP_001383233.1 identified by match to protein family HMM PF00583 YP_001383234.1 identified by match to protein family HMM PF04229 YP_001383235.1 identified by match to protein family HMM PF00583 YP_001383236.1 identified by match to protein family HMM PF02678 YP_001383237.1 identified by match to protein family HMM PF01638 YP_001383238.1 identified by match to protein family HMM PF00881 YP_001383240.1 identified by match to protein family HMM PF00190; match to protein family HMM PF07883 YP_001383241.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_001383242.1 identified by match to protein family HMM PF04657 YP_001383243.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001383244.1 identified by match to protein family HMM PF00583 YP_001383248.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001383251.1 identified by match to protein family HMM PF01327 YP_001383252.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001383253.1 identified by match to protein family HMM PF00881 YP_001383254.1 identified by match to protein family HMM PF00037 YP_001383255.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001383256.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995 YP_001383257.1 identified by match to protein family HMM PF00232 YP_001383258.1 identified by Glimmer3 YP_001383259.1 identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445 YP_001383260.1 identified by match to protein family HMM PF01381 YP_001383262.1 identified by match to protein family HMM PF06555 YP_001383263.1 identified by match to protein family HMM PF00394; match to protein family HMM PF07731 YP_001383266.1 identified by similarity to GB:ABL83831.1 YP_001383267.1 identified by match to protein family HMM PF04371 YP_001383268.1 identified by match to protein family HMM PF00892 YP_001383269.1 identified by match to protein family HMM PF04229 YP_001383270.1 identified by match to protein family HMM PF03734 YP_001383271.1 identified by Glimmer3 YP_001383273.1 identified by Glimmer3 YP_001383274.1 identified by Glimmer3 YP_001383276.1 identified by Glimmer3 YP_001383277.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02687 YP_001383278.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001383279.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001383280.1 identified by match to protein family HMM PF02632 YP_001383281.1 identified by Glimmer3 YP_001383282.1 identified by match to protein family HMM PF00583 YP_001383283.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR00498 YP_001383284.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP YP_001383285.1 identified by match to protein family HMM PF00376; match to protein family HMM PF07739 YP_001383286.1 identified by Glimmer3 YP_001383287.1 identified by Glimmer3 YP_001383288.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_001383289.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_001383290.1 identified by match to protein family HMM PF00155 YP_001383291.1 catalyzes the ATP-dependent transport of cobalt YP_001383292.1 identified by match to protein family HMM PF02553; match to protein family HMM TIGR01165 YP_001383294.1 catalyzes the formation of siroheme from precorrin-2 YP_001383295.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001383296.1 identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469 YP_001383298.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001383299.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_001383300.1 catalyzes the interconversion of precorrin-8X and cobyrinic acid YP_001383301.1 identified by match to protein family HMM PF02517 YP_001383303.1 identified by match to protein family HMM PF01966 YP_001383305.1 identified by Glimmer3 YP_001383306.1 identified by match to protein family HMM PF00583 YP_001383307.1 identified by match to protein family HMM PF02661 YP_001383308.1 identified by match to protein family HMM PF00881 YP_001383309.1 identified by Glimmer3 YP_001383310.1 identified by match to protein family HMM PF04229 YP_001383311.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_001383312.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467 YP_001383313.1 identified by match to protein family HMM PF02517 YP_001383314.1 identified by match to protein family HMM TIGR02469 YP_001383317.1 identified by Glimmer3 YP_001383318.1 identified by Glimmer3 YP_001383321.1 identified by match to protein family HMM PF00857 YP_001383322.1 catalyzes the formation of precorrin-3A from precorrin-2 YP_001383323.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_001383324.1 identified by match to protein family HMM PF01890 YP_001383325.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466 YP_001383326.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_001383328.1 identified by match to protein family HMM PF01903; match to protein family HMM PF06180 YP_001383329.1 identified by match to protein family HMM PF00288 YP_001383330.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_001383331.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001383332.1 identified by match to protein family HMM PF01226 YP_001383333.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02910 YP_001383334.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide YP_001383335.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912 YP_001383336.1 identified by match to protein family HMM PF00994 YP_001383337.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_001383338.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01581 YP_001383339.1 identified by match to protein family HMM PF00005 YP_001383342.1 identified by match to protein family HMM PF00005 YP_001383344.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001383345.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001383346.1 identified by match to protein family HMM PF00005 YP_001383347.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032 YP_001383348.1 identified by match to protein family HMM PF01497 YP_001383349.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_001383350.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_001383351.1 identified by match to protein family HMM PF00165 YP_001383353.1 identified by match to protein family HMM PF00583 YP_001383354.1 identified by match to protein family HMM PF00583 YP_001383355.1 identified by match to protein family HMM PF07081 YP_001383356.1 identified by Glimmer3 YP_001383357.1 identified by match to protein family HMM PF00248 YP_001383358.1 identified by match to protein family HMM PF04993 YP_001383359.1 identified by match to protein family HMM PF00583 YP_001383360.1 identified by match to protein family HMM PF03551 YP_001383363.1 identified by Glimmer3 YP_001383364.1 catalyzes the formation of inosine from adenosine YP_001383365.1 identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_001383366.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_001383369.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_001383370.1 identified by match to protein family HMM PF02915 YP_001383371.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_001383372.1 identified by match to protein family HMM PF00072 YP_001383373.1 identified by match to protein family HMM PF07656 YP_001383374.1 identified by Glimmer3 YP_001383376.1 identified by match to protein family HMM PF04055 YP_001383377.1 identified by match to protein family HMM PF00004 YP_001383378.1 identified by Glimmer3 YP_001383379.1 identified by match to protein family HMM PF02652; match to protein family HMM PF03553; match to protein family HMM TIGR00795 YP_001383381.1 identified by match to protein family HMM PF01012 YP_001383382.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001383383.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_001383384.1 identified by similarity to GB:CAK20204.1 YP_001383386.1 identified by match to protein family HMM PF01047 YP_001383387.1 identified by match to protein family HMM PF04199 YP_001383388.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001383389.1 identified by match to protein family HMM PF04199 YP_001383390.1 identified by match to protein family HMM PF01047 YP_001383391.1 identified by match to protein family HMM PF00376; match to protein family HMM PF06445 YP_001383392.1 identified by match to protein family HMM PF03483 YP_001383393.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001383395.1 identified by match to protein family HMM PF00440 YP_001383397.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254 YP_001383398.1 identified by match to protein family HMM PF00027 YP_001383399.1 identified by match to protein family HMM PF01965 YP_001383400.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001383402.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437 YP_001383403.1 identified by Glimmer3 YP_001383404.1 identified by match to protein family HMM PF00583 YP_001383405.1 identified by match to protein family HMM PF02557 YP_001383406.1 identified by match to protein family HMM TIGR03090 YP_001383407.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001383408.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001383409.1 identified by Glimmer3 YP_001383410.1 identified by match to protein family HMM PF00067 YP_001383411.1 identified by match to protein family HMM PF00403 YP_001383413.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001383414.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001383416.1 identified by match to protein family HMM PF00165 YP_001383417.1 identified by match to protein family HMM PF01032 YP_001383418.1 identified by match to protein family HMM PF01032 YP_001383419.1 identified by match to protein family HMM PF00005 YP_001383420.1 identified by match to protein family HMM PF01497 YP_001383421.1 identified by match to protein family HMM PF00165 YP_001383422.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001383423.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463 YP_001383425.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_001383427.1 identified by match to protein family HMM PF00534 YP_001383428.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_001383429.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00704; match to protein family HMM PF02839 YP_001383430.1 identified by Glimmer3 YP_001383431.1 identified by match to protein family HMM PF03190 YP_001383432.1 identified by match to protein family HMM PF06081 YP_001383434.1 identified by match to protein family HMM PF02517 YP_001383435.1 identified by match to protein family HMM PF00753 YP_001383436.1 identified by match to protein family HMM PF00005 YP_001383437.1 identified by match to protein family HMM PF07670 YP_001383438.1 identified by match to protein family HMM PF03960 YP_001383440.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_001383441.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF07992 YP_001383442.1 identified by match to protein family HMM PF07892 YP_001383443.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881 YP_001383444.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001383445.1 identified by Glimmer3 YP_001383446.1 associated with arginine deiminase pathway genes; probably functions in arginine catabolism YP_001383447.1 identified by match to protein family HMM PF00571 YP_001383448.1 identified by Glimmer3 YP_001383449.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650 YP_001383450.1 identified by match to protein family HMM PF04023 YP_001383451.1 identified by match to protein family HMM PF07238 YP_001383452.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_001383453.1 identified by Glimmer3 YP_001383454.1 identified by match to protein family HMM PF02839 YP_001383455.1 identified by match to protein family HMM PF00583 YP_001383456.1 identified by match to protein family HMM PF00005 YP_001383457.1 identified by match to protein family HMM PF00528 YP_001383458.1 identified by match to protein family HMM PF03180 YP_001383459.1 identified by match to protein family HMM PF03180 YP_001383460.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001383461.1 identified by Glimmer3 YP_001383463.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001383464.1 identified by match to protein family HMM PF02588 YP_001383466.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001383467.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_001383468.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_001383469.1 identified by Glimmer3 YP_001383470.1 identified by match to protein family HMM PF01966 YP_001383471.1 identified by match to protein family HMM PF00171 YP_001383472.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001383473.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001383474.1 identified by match to protein family HMM PF01047 YP_001383475.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797 YP_001383479.1 identified by match to protein family HMM PF00528 YP_001383480.1 identified by match to protein family HMM PF00528 YP_001383481.1 identified by match to protein family HMM PF00005 YP_001383483.1 identified by match to protein family HMM PF00583 YP_001383485.1 identified by match to protein family HMM PF00132 YP_001383486.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121 YP_001383488.1 identified by match to protein family HMM PF00571 YP_001383489.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001383492.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_001383493.1 identified by match to protein family HMM PF00266 YP_001383494.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001383495.1 identified by match to protein family HMM PF06245 YP_001383496.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_001383497.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001383498.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_001383499.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02080 YP_001383501.1 identified by match to protein family HMM PF00857 YP_001383502.1 identified by match to protein family HMM PF00581 YP_001383505.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001383506.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_001383508.1 identified by match to protein family HMM PF00581 YP_001383509.1 identified by Glimmer3 YP_001383510.1 identified by match to protein family HMM PF01594 YP_001383511.1 identified by match to protein family HMM PF03819 YP_001383513.1 identified by Glimmer3 YP_001383514.1 identified by Glimmer3 YP_001383515.1 identified by match to protein family HMM PF01547 YP_001383516.1 identified by match to protein family HMM PF00528 YP_001383517.1 identified by match to protein family HMM PF00005 YP_001383520.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001383521.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_001383523.1 identified by match to protein family HMM PF04392 YP_001383524.1 identified by match to protein family HMM PF02653 YP_001383525.1 identified by match to protein family HMM PF00005 YP_001383526.1 identified by Glimmer3 YP_001383527.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001383528.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151; match to protein family HMM PF08449 YP_001383529.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08279 YP_001383530.1 identified by match to protein family HMM PF04227 YP_001383531.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745 YP_001383532.1 identified by match to protein family HMM PF04961 YP_001383533.1 identified by match to protein family HMM PF00763; match to protein family HMM PF02882 YP_001383534.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001383535.1 identified by match to protein family HMM PF00583 YP_001383536.1 identified by Glimmer3 YP_001383538.1 identified by match to protein family HMM PF02535 YP_001383539.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_001383540.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_001383541.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001383542.1 identified by match to protein family HMM PF00497 YP_001383543.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212 YP_001383544.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268 YP_001383545.1 identified by Glimmer3 YP_001383546.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001383547.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_001383548.1 identified by match to protein family HMM PF02518 YP_001383549.1 identified by match to protein family HMM PF00005 YP_001383551.1 identified by match to protein family HMM PF03009 YP_001383553.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 YP_001383554.1 identified by match to protein family HMM PF00440 YP_001383555.1 identified by match to protein family HMM PF00999 YP_001383556.1 identified by match to protein family HMM PF02696 YP_001383557.1 identified by match to protein family HMM PF01593 YP_001383558.1 identified by match to protein family HMM PF00165 YP_001383560.1 identified by match to protein family HMM PF02055 YP_001383561.1 identified by match to protein family HMM PF00480 YP_001383562.1 identified by match to protein family HMM PF00232 YP_001383563.1 identified by match to protein family HMM PF00686; match to protein family HMM PF01373 YP_001383564.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001383565.1 identified by match to protein family HMM PF00392 YP_001383566.1 identified by match to protein family HMM PF00005 YP_001383570.1 identified by Glimmer3 YP_001383571.1 identified by match to protein family HMM PF00704; match to protein family HMM PF01476; match to protein family HMM PF08239 YP_001383572.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_001383573.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_001383574.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_001383575.1 identified by Glimmer3 YP_001383576.1 identified by Glimmer3 YP_001383578.1 identified by match to protein family HMM PF01244 YP_001383579.1 identified by Glimmer3 YP_001383580.1 identified by match to protein family HMM PF02687 YP_001383581.1 identified by Glimmer3 YP_001383582.1 identified by match to protein family HMM PF00005 YP_001383583.1 identified by match to protein family HMM PF00528 YP_001383584.1 identified by match to protein family HMM PF00528 YP_001383585.1 identified by match to protein family HMM PF00496 YP_001383588.1 identified by match to protein family HMM PF05067 YP_001383591.1 identified by match to protein family HMM PF04525 YP_001383592.1 identified by Glimmer3 YP_001383593.1 identified by match to protein family HMM PF00692 YP_001383594.1 identified by match to protein family HMM TIGR02861 YP_001383596.1 identified by similarity to GB:ABK61158.1 YP_001383597.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001383599.1 identified by Glimmer3 YP_001383600.1 identified by match to protein family HMM PF00440 YP_001383601.1 identified by Glimmer3 YP_001383602.1 identified by Glimmer3 YP_001383603.1 identified by Glimmer3 YP_001383604.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001383605.1 identified by Glimmer3 YP_001383606.1 identified by match to protein family HMM PF01381 YP_001383609.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196 YP_001383610.1 identified by match to protein family HMM PF00171 YP_001383611.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001383613.1 identified by match to protein family HMM PF09338 YP_001383614.1 Selenoprotein. identified by similarity to SP:P52217; match to protein family HMM PF07355; match to protein family HMM TIGR01918 YP_001383615.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_001383616.1 identified by match to protein family HMM PF00085 YP_001383617.1 GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin YP_001383618.1 identified by match to protein family HMM PF08545 YP_001383619.1 identified by match to protein family HMM PF02504 YP_001383620.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_001383621.1 identified by match to protein family HMM PF07669 YP_001383622.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway YP_001383623.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway YP_001383624.1 identified by Glimmer3 YP_001383625.1 identified by match to protein family HMM PF00596 YP_001383626.1 identified by Glimmer3 YP_001383627.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001383629.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001383630.1 identified by match to protein family HMM PF04239 YP_001383636.1 identified by Glimmer3 YP_001383637.1 identified by Glimmer3 YP_001383640.1 molybdenum cofactor-binding protein; participates in purine salvage YP_001383641.1 FAD-binding subunit; with XdhA and XdhC participates in purine salvage YP_001383642.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_001383643.1 identified by match to protein family HMM PF00383 YP_001383644.1 decatenates replicating daughter chromosomes YP_001383645.1 identified by match to protein family HMM PF02659 YP_001383647.1 identified by Glimmer3 YP_001383648.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_001383649.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_001383650.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001383651.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001383653.1 identified by match to protein family HMM PF00535 YP_001383658.1 identified by match to protein family HMM PF02583 YP_001383659.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_001383660.1 identified by match to protein family HMM PF00403 YP_001383661.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001383662.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001383663.1 identified by match to protein family HMM PF02517 YP_001383664.1 identified by match to protein family HMM PF02579 YP_001383665.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001383666.1 identified by match to protein family HMM PF01243 YP_001383667.1 identified by similarity to SP:Q8K9S1 YP_001383668.1 identified by match to protein family HMM PF01230 YP_001383670.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_001383671.1 identified by match to protein family HMM PF07907 YP_001383672.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_001383673.1 identified by match to protein family HMM PF02386 YP_001383674.1 identified by Glimmer3 YP_001383675.1 identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573 YP_001383676.1 identified by match to protein family HMM PF07853 YP_001383677.1 identified by match to protein family HMM PF00392 YP_001383678.1 identified by match to protein family HMM PF01476; match to protein family HMM PF07486 YP_001383679.1 identified by match to protein family HMM PF02915 YP_001383680.1 identified by match to protein family HMM PF04122 YP_001383681.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002 YP_001383682.1 identified by match to protein family HMM PF01255 YP_001383683.1 identified by Glimmer3 YP_001383684.1 identified by Glimmer3 YP_001383685.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_001383686.1 identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702 YP_001383687.1 identified by match to protein family HMM PF00037 YP_001383688.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001383689.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151 YP_001383690.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001383691.1 identified by match to protein family HMM PF07690 YP_001383692.1 identified by match to protein family HMM PF01497 YP_001383693.1 identified by match to protein family HMM PF01032 YP_001383694.1 identified by match to protein family HMM PF00005 YP_001383696.1 identified by match to protein family HMM PF00037 YP_001383697.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001383698.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_001383699.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378 YP_001383700.1 identified by match to protein family HMM PF05913 YP_001383701.1 identified by match to protein family HMM PF06475 YP_001383702.1 identified by match to protein family HMM PF06555 YP_001383705.1 identified by Glimmer3 YP_001383707.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001383708.1 identified by match to protein family HMM PF00496 YP_001383709.1 identified by match to protein family HMM PF00528 YP_001383710.1 identified by match to protein family HMM PF00528 YP_001383711.1 identified by match to protein family HMM PF00005 YP_001383712.1 identified by match to protein family HMM PF00005 YP_001383714.1 identified by match to protein family HMM PF00950 YP_001383715.1 identified by match to protein family HMM PF00005 YP_001383716.1 identified by match to protein family HMM PF01297 YP_001383718.1 identified by match to protein family HMM PF00271 YP_001383719.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001383721.1 identified by match to protein family HMM PF00528 YP_001383722.1 identified by match to protein family HMM PF00005 YP_001383723.1 identified by match to protein family HMM PF01475 YP_001383724.1 identified by match to protein family HMM PF02001 YP_001383725.1 identified by match to protein family HMM PF00246; match to protein family HMM PF01471; match to protein family HMM PF01476 YP_001383726.1 identified by Glimmer3 YP_001383727.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_001383728.1 identified by match to protein family HMM PF00324 YP_001383729.1 identified by match to protein family HMM PF08000 YP_001383730.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_001383731.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001383732.1 identified by match to protein family HMM PF00005 YP_001383734.1 identified by match to protein family HMM PF01061 YP_001383735.1 identified by Glimmer3 YP_001383736.1 identified by match to protein family HMM PF00881 YP_001383738.1 identified by match to protein family HMM PF00313 YP_001383739.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_001383740.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001383741.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_001383742.1 identified by match to protein family HMM PF01625 YP_001383743.1 identified by match to protein family HMM PF00005 YP_001383744.1 identified by match to protein family HMM PF02687 YP_001383746.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001383747.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001383748.1 identified by match to protein family HMM PF00005 YP_001383752.1 identified by match to protein family HMM PF00155 YP_001383753.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001383754.1 identified by match to protein family HMM PF00005 YP_001383755.1 identified by match to protein family HMM PF01381 YP_001383756.1 identified by match to protein family HMM PF00768 YP_001383757.1 identified by match to protein family HMM PF00293 YP_001383759.1 identified by match to protein family HMM PF00465 YP_001383760.1 identified by Glimmer3 YP_001383761.1 identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808 YP_001383762.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_001383763.1 identified by match to protein family HMM PF00497 YP_001383764.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001383766.1 identified by match to protein family HMM PF00580 YP_001383769.1 identified by Glimmer3 YP_001383770.1 identified by match to protein family HMM PF00583 YP_001383771.1 identified by Glimmer3 YP_001383772.1 identified by Glimmer3 YP_001383773.1 identified by Glimmer3 YP_001383776.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01520 YP_001383778.1 identified by match to protein family HMM PF07875 YP_001383779.1 identified by Glimmer3 YP_001383780.1 identified by Glimmer3 YP_001383781.1 identified by Glimmer3 YP_001383782.1 identified by match to protein family HMM PF02491 YP_001383783.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001383784.1 identified by match to protein family HMM PF01520 YP_001383785.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_001383786.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_001383787.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR02900 YP_001383790.1 identified by match to protein family HMM PF00465 YP_001383791.1 identified by match to protein family HMM PF05362 YP_001383792.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_001383793.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_001383794.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_001383795.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_001383796.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_001383797.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_001383798.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 YP_001383799.1 catalyzes the formation of oxaloacetate from L-aspartate YP_001383800.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_001383801.1 identified by Glimmer3 YP_001383802.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_001383803.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001383804.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_001383805.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_001383807.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214 YP_001383808.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_001383809.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_001383810.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001383811.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615 YP_001383812.1 identified by match to protein family HMM PF08478 YP_001383813.1 identified by match to protein family HMM PF05949 YP_001383814.1 identified by match to protein family HMM PF06947 YP_001383815.1 identified by match to protein family HMM PF05949 YP_001383816.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_001383817.1 identified by match to protein family HMM PF04472 YP_001383818.1 identified by match to protein family HMM PF02325 YP_001383820.1 identified by match to protein family HMM PF05103 YP_001383821.1 identified by match to protein family HMM PF01761; match to protein family HMM TIGR01357 YP_001383822.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_001383823.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_001383824.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001383825.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02890 YP_001383826.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001383827.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_001383828.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_001383829.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_001383830.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_001383831.1 identified by match to protein family HMM PF01170 YP_001383832.1 identified by Glimmer3 YP_001383833.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_001383834.1 identified by match to protein family HMM PF00528 YP_001383835.1 identified by match to protein family HMM PF00005 YP_001383837.1 identified by match to protein family HMM PF01734 YP_001383839.1 identified by match to protein family HMM PF01208 YP_001383840.1 identified by match to protein family HMM PF03553 YP_001383841.1 identified by match to protein family HMM PF00111 YP_001383842.1 identified by match to protein family HMM PF02492 YP_001383843.1 identified by match to protein family HMM PF01208 YP_001383844.1 identified by match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM TIGR02370 YP_001383845.1 catalyze the formation of methyl-coenzyme M from methylcobalamin and coenzyme M YP_001383846.1 identified by match to protein family HMM PF01208 YP_001383847.1 identified by match to protein family HMM PF00005 YP_001383848.1 identified by match to protein family HMM PF00528 YP_001383849.1 identified by match to protein family HMM PF03180 YP_001383850.1 identified by match to protein family HMM PF02493 YP_001383851.1 identified by match to protein family HMM PF00724 YP_001383852.1 catalyzes the formation of asparagine from aspartate and ammonia YP_001383853.1 identified by match to protein family HMM PF00355; match to protein family HMM PF01266 YP_001383854.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751 YP_001383855.1 identified by match to protein family HMM PF00488 YP_001383856.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248 YP_001383857.1 identified by match to protein family HMM PF04073 YP_001383858.1 identified by match to protein family HMM PF00005 YP_001383859.1 identified by match to protein family HMM PF00440 YP_001383861.1 identified by match to protein family HMM PF00005 YP_001383862.1 identified by match to protein family HMM PF00528 YP_001383863.1 identified by match to protein family HMM PF00528 YP_001383864.1 identified by match to protein family HMM PF01547 YP_001383865.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771 YP_001383866.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001383867.1 identified by match to protein family HMM TIGR01909 YP_001383868.1 identified by match to protein family HMM PF03595 YP_001383869.1 identified by Glimmer3 YP_001383870.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_001383871.1 identified by match to protein family HMM PF03860 YP_001383872.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001383873.1 identified by match to protein family HMM PF01047 YP_001383875.1 identified by match to protein family HMM PF01638 YP_001383876.1 identified by match to protein family HMM PF00903 YP_001383877.1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated YP_001383878.1 identified by match to protein family HMM PF00165 YP_001383879.1 identified by match to protein family HMM PF06792 YP_001383881.1 identified by match to protein family HMM PF01381 YP_001383882.1 identified by Glimmer3 YP_001383883.1 identified by Glimmer3 YP_001383884.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001383885.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_001383886.1 identified by match to protein family HMM PF01325; match to protein family HMM PF02742 YP_001383888.1 identified by match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277 YP_001383889.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001383890.1 identified by match to protein family HMM PF00903 YP_001383891.1 identified by match to protein family HMM PF00302 YP_001383892.1 identified by match to protein family HMM PF00027 YP_001383893.1 identified by match to protein family HMM PF00196 YP_001383894.1 identified by match to protein family HMM PF06445 YP_001383895.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001383896.1 identified by match to protein family HMM PF06050 YP_001383897.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001383898.1 identified by match to protein family HMM PF01242 YP_001383899.1 identified by match to protein family HMM PF04055 YP_001383900.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_001383901.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_001383902.1 identified by match to protein family HMM PF00015 YP_001383903.1 identified by match to protein family HMM PF06161 YP_001383905.1 identified by match to protein family HMM PF04198 YP_001383906.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_001383907.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_001383908.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_001383909.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_001383910.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_001383911.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001383912.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001383913.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_001383914.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001383915.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001383916.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_001383917.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_001383918.1 identified by match to protein family HMM PF04143 YP_001383919.1 identified by match to protein family HMM PF01206 YP_001383920.1 identified by match to protein family HMM PF04143 YP_001383921.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001383922.1 identified by match to protein family HMM PF01235 YP_001383923.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_001383924.1 identified by match to protein family HMM PF04143 YP_001383925.1 identified by match to protein family HMM PF00005 YP_001383928.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001383929.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001383930.1 identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078 YP_001383931.1 identified by match to protein family HMM PF00324 YP_001383932.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_001383933.1 identified by match to protein family HMM PF08876 YP_001383934.1 identified by match to protein family HMM PF01966 YP_001383935.1 identified by Glimmer3 YP_001383936.1 identified by Glimmer3 YP_001383937.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; match to protein family HMM PF08455 YP_001383938.1 identified by match to protein family HMM PF04607 YP_001383940.1 identified by match to protein family HMM PF00165 YP_001383941.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001383942.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001383943.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001383944.1 identified by match to protein family HMM PF00480 YP_001383945.1 identified by match to protein family HMM PF00128 YP_001383946.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003 YP_001383947.1 identified by match to protein family HMM PF03372 YP_001383948.1 identified by match to protein family HMM TIGR02840 YP_001383952.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001383953.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001383954.1 identified by Glimmer3 YP_001383955.1 identified by match to protein family HMM PF07690 YP_001383956.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001383957.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001383958.1 identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001383960.1 identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453 YP_001383961.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_001383962.1 identified by match to protein family HMM PF02965 YP_001383963.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607 YP_001383965.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001383967.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954 YP_001383968.1 identified by match to protein family HMM TIGR02058 YP_001383969.1 identified by match to protein family HMM PF00676 YP_001383970.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001383971.1 identified by match to protein family HMM PF01513 YP_001383972.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_001383973.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_001383974.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_001383975.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_001383976.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069 YP_001383977.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001383978.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_001383979.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive YP_001383980.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_001383981.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR00229 YP_001383982.1 identified by match to protein family HMM PF00465 YP_001383983.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970 YP_001383984.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_001383985.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001383986.1 identified by match to protein family HMM PF00805 YP_001383987.1 identified by match to protein family HMM PF02368 YP_001383988.1 identified by Glimmer3 YP_001383991.1 identified by match to protein family HMM PF08239 YP_001383992.1 identified by Glimmer3 YP_001383993.1 identified by Glimmer3 YP_001383997.1 identified by match to protein family HMM PF01814 YP_001383998.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_001383999.1 identified by match to protein family HMM PF00015 YP_001384000.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_001384001.1 identified by match to protein family HMM PF06161 YP_001384002.1 identified by match to protein family HMM PF00106 YP_001384003.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001384004.1 identified by match to protein family HMM PF07656 YP_001384006.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455 YP_001384007.1 identified by match to protein family HMM PF01980 YP_001384008.1 identified by Glimmer3 YP_001384009.1 identified by match to protein family HMM PF02663 YP_001384010.1 identified by match to protein family HMM PF00496 YP_001384011.1 identified by match to protein family HMM PF00528 YP_001384012.1 identified by match to protein family HMM PF00528 YP_001384013.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_001384014.1 identified by match to protein family HMM PF00929 YP_001384015.1 identified by match to protein family HMM PF06207 YP_001384016.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001384017.1 identified by match to protein family HMM PF00011 YP_001384018.1 identified by match to protein family HMM PF07690 YP_001384019.1 identified by match to protein family HMM PF00440 YP_001384020.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_001384021.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_001384022.1 identified by Glimmer3 YP_001384025.1 identified by Glimmer3 YP_001384026.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08543 YP_001384027.1 identified by match to protein family HMM PF00188; match to protein family HMM PF01476 YP_001384028.1 identified by Glimmer3 YP_001384029.1 identified by match to protein family HMM PF00313 YP_001384030.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001384031.1 identified by match to protein family HMM PF00005 YP_001384032.1 identified by match to protein family HMM PF04073 YP_001384033.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460 YP_001384034.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584 YP_001384035.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001384036.1 identified by match to protein family HMM PF00575 YP_001384037.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_001384038.1 identified by Glimmer3 YP_001384039.1 identified by match to protein family HMM PF00560; match to protein family HMM PF07532 YP_001384040.1 identified by match to protein family HMM PF01832 YP_001384041.1 identified by match to protein family HMM PF00210 YP_001384042.1 identified by Glimmer3 YP_001384043.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04509 YP_001384044.1 identified by match to protein family HMM PF04509 YP_001384045.1 identified by match to protein family HMM PF07670 YP_001384046.1 identified by match to protein family HMM PF00269 YP_001384047.1 identified by match to protein family HMM PF00269 YP_001384048.1 Selenoprotein. identified by similarity to GB:ABG87712.1 YP_001384049.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_001384051.1 Represses a number of genes involved in the response to DNA damage YP_001384052.1 identified by match to protein family HMM PF01053; match to protein family HMM PF06838 YP_001384053.1 identified by Glimmer3 YP_001384054.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_001384055.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_001384056.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_001384057.1 This protein performs the mismatch recognition step during the DNA repair process YP_001384058.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001384059.1 identified by match to protein family HMM PF00155 YP_001384060.1 identified by similarity to GB:ABK61786.1 YP_001384061.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001384062.1 identified by match to protein family HMM PF00583 YP_001384063.1 identified by match to protein family HMM TIGR02906 YP_001384064.1 these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001384065.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_001384066.1 identified by match to protein family HMM PF07736; match to protein family HMM TIGR01796 YP_001384067.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_001384068.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812 YP_001384069.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001384070.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001384072.1 identified by match to protein family HMM PF06354 YP_001384073.1 identified by match to protein family HMM PF00535 YP_001384074.1 identified by Glimmer3 YP_001384075.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001384076.1 identified by match to protein family HMM PF02683 YP_001384077.1 identified by match to protein family HMM PF00085 YP_001384078.1 identified by match to protein family HMM PF00795 YP_001384079.1 identified by Glimmer3 YP_001384080.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080 YP_001384081.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_001384082.1 identified by match to protein family HMM PF00583 YP_001384084.1 identified by match to protein family HMM PF01906 YP_001384085.1 identified by Glimmer3 YP_001384087.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229 YP_001384088.1 identified by match to protein family HMM PF07228 YP_001384089.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229 YP_001384090.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124 YP_001384091.1 identified by match to protein family HMM PF01924 YP_001384092.1 identified by Glimmer3 YP_001384093.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143 YP_001384094.1 identified by Glimmer3 YP_001384095.1 identified by match to protein family HMM PF00173 YP_001384096.1 identified by match to protein family HMM PF01750 YP_001384097.1 identified by match to protein family HMM PF00374 YP_001384098.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391 YP_001384099.1 identified by match to protein family HMM PF05857 YP_001384100.1 identified by Glimmer3 YP_001384101.1 identified by Glimmer3 YP_001384102.1 identified by Glimmer3 YP_001384103.1 identified by Glimmer3 YP_001384104.1 identified by match to protein family HMM PF00005 YP_001384105.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512 YP_001384106.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512 YP_001384107.1 identified by match to protein family HMM PF01257 YP_001384108.1 identified by match to protein family HMM PF00999 YP_001384109.1 identified by match to protein family HMM PF03747 YP_001384110.1 identified by match to protein family HMM PF01594 YP_001384111.1 identified by match to protein family HMM PF00768 YP_001384113.1 identified by match to protein family HMM TIGR02874 YP_001384114.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer YP_001384115.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB YP_001384117.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_001384119.1 identified by match to protein family HMM PF03372 YP_001384121.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644 YP_001384122.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_001384123.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225 YP_001384124.1 identified by similarity to GB:AAK80026.1 YP_001384125.1 identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831 YP_001384126.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052 YP_001384127.1 identified by match to protein family HMM PF00324 YP_001384128.1 identified by match to protein family HMM PF00877 YP_001384129.1 identified by Glimmer3 YP_001384130.1 identified by match to protein family HMM PF00589 YP_001384131.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875 YP_001384132.1 identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860 YP_001384133.1 identified by match to protein family HMM PF04204; match to protein family HMM TIGR01001 YP_001384134.1 identified by match to protein family HMM PF00742; match to protein family HMM PF03447 YP_001384135.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_001384136.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_001384137.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_001384138.1 identified by match to protein family HMM PF01513 YP_001384139.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_001384140.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001384142.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_001384143.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_001384144.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_001384145.1 identified by match to protein family HMM PF03780 YP_001384147.1 identified by match to protein family HMM TIGR02830 YP_001384148.1 identified by match to protein family HMM TIGR02896 YP_001384149.1 identified by match to protein family HMM TIGR02829 YP_001384150.1 identified by match to protein family HMM TIGR02849 YP_001384151.1 identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848 YP_001384152.1 necessary for complete engulfment of forespore YP_001384153.1 identified by match to protein family HMM TIGR02858 YP_001384155.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001384156.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001384157.1 identified by match to protein family HMM PF01202 YP_001384159.1 identified by Glimmer3 YP_001384162.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001384163.1 identified by match to protein family HMM TIGR02532 YP_001384165.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001384166.1 identified by match to protein family HMM PF00482 YP_001384167.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157 YP_001384168.1 identified by Glimmer3 YP_001384170.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001384171.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833 YP_001384172.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001384173.1 identified by Glimmer3 YP_001384174.1 identified by match to protein family HMM PF01230 YP_001384175.1 identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788 YP_001384176.1 identified by Glimmer3 YP_001384177.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001384178.1 identified by match to protein family HMM PF03415; match to protein family HMM TIGR02806 YP_001384180.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001384181.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001384182.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_001384183.1 identified by match to protein family HMM PF00072 YP_001384184.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001384185.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001384188.1 identified by match to protein family HMM PF00005 YP_001384189.1 identified by Glimmer3 YP_001384190.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001384191.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001384192.1 identified by match to protein family HMM PF01047 YP_001384193.1 identified by match to protein family HMM PF00899 YP_001384194.1 identified by match to protein family HMM PF02597 YP_001384195.1 identified by match to protein family HMM PF01314; match to protein family HMM PF02730 YP_001384196.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR00229 YP_001384197.1 identified by match to protein family HMM PF03473 YP_001384198.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_001384199.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_001384200.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_001384201.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_001384202.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_001384203.1 identified by match to protein family HMM PF00005 YP_001384204.1 identified by match to protein family HMM PF00528 YP_001384205.1 identified by match to protein family HMM PF01547 YP_001384206.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001384207.1 identified by Glimmer3 YP_001384208.1 identified by match to protein family HMM PF09335 YP_001384209.1 identified by match to protein family HMM PF00005 YP_001384210.1 identified by match to protein family HMM PF02687 YP_001384211.1 identified by Glimmer3 YP_001384212.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001384213.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001384214.1 identified by match to protein family HMM PF00376 YP_001384215.1 identified by match to protein family HMM PF03358 YP_001384216.1 identified by match to protein family HMM PF00560 YP_001384217.1 identified by match to protein family HMM PF02839; match to protein family HMM TIGR03296 YP_001384218.1 identified by match to protein family HMM PF00158; match to protein family HMM PF07728 YP_001384220.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_001384221.1 identified by match to protein family HMM PF00375 YP_001384222.1 identified by match to protein family HMM PF00155 YP_001384223.1 identified by match to protein family HMM PF06354 YP_001384224.1 identified by Glimmer3 YP_001384225.1 identified by match to protein family HMM PF00560 YP_001384226.1 identified by match to protein family HMM TIGR03296 YP_001384227.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001384228.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001384229.1 identified by Glimmer3 YP_001384230.1 identified by match to protein family HMM PF02596 YP_001384231.1 identified by match to protein family HMM PF02361 YP_001384232.1 identified by match to protein family HMM PF00005 YP_001384234.1 identified by match to protein family HMM PF01168 YP_001384235.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001384236.1 identified by match to protein family HMM PF03323 YP_001384237.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001384238.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_001384239.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001384240.1 identified by match to protein family HMM TIGR01909 YP_001384241.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_001384242.1 identified by match to protein family HMM PF04055 YP_001384243.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001384244.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_001384245.1 molecular chaperone YP_001384246.1 identified by match to protein family HMM PF00488 YP_001384247.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992 YP_001384248.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403 YP_001384249.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404 YP_001384250.1 identified by match to protein family HMM PF00359; match to protein family HMM TIGR00848 YP_001384251.1 identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427 YP_001384252.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_001384253.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway YP_001384254.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001384256.1 identified by match to protein family HMM PF01042 YP_001384257.1 identified by match to protein family HMM PF04055 YP_001384258.1 identified by Glimmer3 YP_001384259.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_001384260.1 identified by Glimmer3 YP_001384261.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001384262.1 identified by Glimmer3 YP_001384263.1 identified by match to protein family HMM PF01168 YP_001384265.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_001384266.1 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis YP_001384267.1 identified by match to protein family HMM PF00860 YP_001384268.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001384269.1 identified by match to protein family HMM PF06354 YP_001384270.1 identified by match to protein family HMM PF00158 YP_001384271.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001384272.1 identified by match to protein family HMM PF00188; match to protein family HMM TIGR02909 YP_001384273.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001384274.1 identified by match to protein family HMM PF00892 YP_001384275.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001384276.1 identified by match to protein family HMM PF00005 YP_001384277.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001384278.1 identified by match to protein family HMM PF00497 YP_001384280.1 identified by match to protein family HMM PF00266 YP_001384281.1 identified by match to protein family HMM PF00302 YP_001384283.1 identified by Glimmer3 YP_001384286.1 identified by match to protein family HMM PF01381 YP_001384287.1 identified by Glimmer3 YP_001384288.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_001384289.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_001384290.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_001384291.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250 YP_001384292.1 identified by Glimmer3 YP_001384293.1 identified by match to protein family HMM PF00209 YP_001384294.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001384295.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_001384296.1 identified by Glimmer3 YP_001384298.1 identified by match to protein family HMM PF00881 YP_001384299.1 identified by Glimmer3 YP_001384300.1 identified by Glimmer3 YP_001384302.1 similar to streptococcal 67 kDa myosin-cross-reactive antigen family protein; in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_001384303.1 identified by match to protein family HMM PF00440 YP_001384304.1 identified by Glimmer3 YP_001384305.1 identified by Glimmer3 YP_001384306.1 identified by Glimmer3 YP_001384307.1 identified by match to protein family HMM PF00132 YP_001384308.1 identified by match to protein family HMM PF01041 YP_001384309.1 identified by Glimmer3 YP_001384310.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01208 YP_001384311.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_001384314.1 identified by Glimmer3 YP_001384315.1 identified by Glimmer3 YP_001384317.1 identified by match to protein family HMM PF04892 YP_001384318.1 identified by Glimmer3 YP_001384320.1 identified by match to protein family HMM PF00005 YP_001384321.1 identified by match to protein family HMM PF00392 YP_001384322.1 identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426 YP_001384323.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_001384325.1 Catalyzes the deamination of cytosine to uracil and ammonia YP_001384326.1 identified by match to protein family HMM PF02133 YP_001384327.1 identified by Glimmer3 YP_001384328.1 identified by match to protein family HMM PF04055 YP_001384329.1 identified by Glimmer3 YP_001384330.1 identified by match to protein family HMM PF00005 YP_001384331.1 identified by match to protein family HMM PF02361 YP_001384332.1 identified by match to protein family HMM TIGR02185 YP_001384333.1 identified by match to protein family HMM PF00165 YP_001384334.1 identified by match to protein family HMM PF00583 YP_001384335.1 identified by Glimmer3 YP_001384337.1 identified by match to protein family HMM PF00293 YP_001384338.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_001384339.1 identified by Glimmer3 YP_001384340.1 identified by Glimmer3 YP_001384341.1 identified by match to protein family HMM PF00580 YP_001384343.1 identified by Glimmer3 YP_001384344.1 identified by Glimmer3 YP_001384346.1 identified by Glimmer3 YP_001384347.1 identified by Glimmer3 YP_001384348.1 identified by Glimmer3 YP_001384349.1 identified by Glimmer3 YP_001384350.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_001384351.1 identified by match to protein family HMM PF00561 YP_001384353.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001384354.1 identified by match to protein family HMM PF00535 YP_001384355.1 identified by match to protein family HMM PF00534; match to protein family HMM PF00535 YP_001384356.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231 YP_001384357.1 identified by Glimmer3 YP_001384358.1 identified by match to protein family HMM PF00936 YP_001384359.1 identified by match to protein family HMM PF06130 YP_001384360.1 identified by match to protein family HMM TIGR02518 YP_001384361.1 identified by match to protein family HMM PF00936 YP_001384362.1 identified by match to protein family HMM PF05899; match to protein family HMM PF06249 YP_001384363.1 identified by match to protein family HMM PF03319 YP_001384364.1 identified by match to protein family HMM PF00936 YP_001384365.1 identified by match to protein family HMM TIGR02529 YP_001384368.1 identified by match to protein family HMM PF00936 YP_001384369.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_001384370.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901 YP_001384372.1 identified by match to protein family HMM PF00936 YP_001384373.1 identified by match to protein family HMM PF00936 YP_001384374.1 identified by Glimmer3 YP_001384375.1 identified by Glimmer3 YP_001384377.1 identified by match to protein family HMM PF00376 YP_001384378.1 identified by match to protein family HMM PF00465 YP_001384379.1 identified by match to protein family HMM PF01554 YP_001384380.1 identified by Glimmer3 YP_001384382.1 identified by Glimmer3 YP_001384383.1 identified by match to protein family HMM PF09234 YP_001384385.1 identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764 YP_001384386.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_001384387.1 identified by Glimmer3 YP_001384388.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001384389.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001384392.1 identified by match to protein family HMM PF00005 YP_001384393.1 identified by match to protein family HMM PF02687 YP_001384394.1 FAD/NAD(P)-binding domain YP_001384397.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_001384398.1 identified by match to protein family HMM PF01261 YP_001384399.1 identified by match to protein family HMM PF01761 YP_001384400.1 identified by match to protein family HMM PF02687 YP_001384401.1 identified by match to protein family HMM PF00005 YP_001384403.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279 YP_001384404.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_001384405.1 identified by match to protein family HMM PF02302 YP_001384406.1 identified by match to protein family HMM PF00359 YP_001384407.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_001384408.1 identified by Glimmer3 YP_001384409.1 identified by Glimmer3 YP_001384410.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023 YP_001384413.1 identified by match to protein family HMM PF00132 YP_001384414.1 identified by Glimmer3 YP_001384415.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_001384416.1 identified by match to protein family HMM PF08242 YP_001384417.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_001384419.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_001384420.1 identified by match to protein family HMM PF00376 YP_001384421.1 identified by Glimmer3 YP_001384422.1 identified by Glimmer3 YP_001384423.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR01898 YP_001384425.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR02580 YP_001384427.1 identified by match to protein family HMM TIGR02577 YP_001384428.1 identified by Glimmer3 YP_001384429.1 identified by Glimmer3 YP_001384430.1 identified by Glimmer3 YP_001384431.1 identified by match to protein family HMM TIGR01877 YP_001384433.1 identified by Glimmer3 YP_001384434.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_001384435.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_001384436.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001384438.1 identified by match to protein family HMM PF01381 YP_001384439.1 identified by match to protein family HMM PF07859 YP_001384440.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_001384441.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR03173 YP_001384442.1 identified by Glimmer3 YP_001384443.1 identified by match to protein family HMM PF00324 YP_001384444.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001384446.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001384447.1 identified by match to protein family HMM PF01012 YP_001384448.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001384449.1 identified by match to protein family HMM PF06050 YP_001384450.1 identified by match to protein family HMM PF06050 YP_001384451.1 identified by match to protein family HMM PF02515 YP_001384452.1 identified by match to protein family HMM PF00037 YP_001384453.1 identified by match to protein family HMM PF06050 YP_001384454.1 identified by match to protein family HMM PF01869; match to protein family HMM PF06050; match to protein family HMM TIGR00241 YP_001384455.1 identified by match to protein family HMM PF00015 YP_001384456.1 identified by Glimmer3 YP_001384458.1 identified by match to protein family HMM PF00583 YP_001384459.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_001384460.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_001384462.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001384463.1 identified by match to protein family HMM PF02517 YP_001384464.1 identified by match to protein family HMM PF03734 YP_001384465.1 identified by match to protein family HMM PF00440 YP_001384469.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_001384470.1 identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702 YP_001384471.1 identified by match to protein family HMM PF01155 YP_001384472.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_001384473.1 identified by match to protein family HMM PF02579 YP_001384474.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01656 YP_001384475.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01656 YP_001384476.1 identified by match to protein family HMM PF02579 YP_001384477.1 identified by Glimmer3 YP_001384478.1 identified by match to protein family HMM PF00691 YP_001384479.1 With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_001384480.1 identified by Glimmer3 YP_001384481.1 identified by match to protein family HMM PF04122 YP_001384484.1 identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733 YP_001384485.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_001384486.1 identified by match to protein family HMM PF01212 YP_001384487.1 identified by Glimmer3 YP_001384488.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_001384489.1 identified by match to protein family HMM PF00106 YP_001384491.1 identified by match to protein family HMM PF00005 YP_001384492.1 identified by match to protein family HMM PF00583 YP_001384493.1 identified by match to protein family HMM PF01047 YP_001384494.1 identified by Glimmer3 YP_001384496.1 identified by match to protein family HMM PF01208 YP_001384497.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_001384498.1 identified by match to protein family HMM PF00376; match to protein family HMM PF06445 YP_001384499.1 identified by match to protein family HMM PF00324 YP_001384500.1 identified by match to protein family HMM PF01661 YP_001384501.1 identified by match to protein family HMM PF06961 YP_001384502.1 identified by Glimmer3 YP_001384503.1 identified by match to protein family HMM PF01047 YP_001384506.1 identified by match to protein family HMM PF02110 YP_001384507.1 identified by match to protein family HMM TIGR02359 YP_001384508.1 identified by Glimmer3 YP_001384509.1 identified by match to protein family HMM PF00583 YP_001384510.1 identified by match to protein family HMM PF00753 YP_001384512.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_001384513.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_001384514.1 identified by match to protein family HMM PF02632 YP_001384516.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047 YP_001384518.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_001384519.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_001384520.1 identified by Glimmer3 YP_001384522.1 identified by Glimmer3 YP_001384523.1 identified by match to protein family HMM PF02275; match to protein family HMM PF03417 YP_001384524.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_001384525.1 identified by Glimmer3 YP_001384526.1 identified by Glimmer3 YP_001384527.1 identified by Glimmer3 YP_001384529.1 identified by similarity to GB:BAE81899.1 YP_001384531.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_001384532.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_001384533.1 identified by match to protein family HMM PF00005 YP_001384534.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001384535.1 identified by match to protein family HMM PF00165 YP_001384538.1 identified by match to protein family HMM PF00005 YP_001384539.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001384540.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001384541.1 identified by Glimmer3 YP_001384542.1 identified by match to protein family HMM PF00929 YP_001384543.1 identified by match to protein family HMM PF07876 YP_001384544.1 identified by match to protein family HMM PF00753 YP_001384545.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_001384546.1 identified by match to protein family HMM PF01381 YP_001384547.1 involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links YP_001384548.1 identified by Glimmer3 YP_001384549.1 identified by match to protein family HMM PF00106 YP_001384551.1 identified by match to protein family HMM PF02366 YP_001384554.1 identified by Glimmer3 YP_001384555.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_001384556.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001384558.1 identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001384559.1 identified by Glimmer3 YP_001384560.1 identified by Glimmer3 YP_001384561.1 identified by match to protein family HMM PF03551 YP_001384563.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001384564.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001384565.1 identified by match to protein family HMM PF00627 YP_001384566.1 identified by Glimmer3 YP_001384568.1 identified by Glimmer3 YP_001384569.1 identified by match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_001384570.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001384571.1 identified by match to protein family HMM PF04070 YP_001384572.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_001384573.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001384574.1 identified by match to protein family HMM PF00892; match to protein family HMM PF00893 YP_001384576.1 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate YP_001384577.1 identified by match to protein family HMM PF04232 YP_001384578.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_001384579.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_001384580.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_001384581.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 YP_001384582.1 identified by match to protein family HMM PF01580 YP_001384583.1 identified by match to protein family HMM PF00574 YP_001384584.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive YP_001384585.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_001384586.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_001384587.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_001384588.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001384589.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_001384590.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_001384591.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_001384592.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_001384593.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_001384594.1 identified by match to protein family HMM PF01248 YP_001384595.1 identified by match to protein family HMM PF04296 YP_001384596.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001384597.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_001384598.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity YP_001384599.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_001384600.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_001384601.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001384602.1 identified by match to protein family HMM PF01594 YP_001384603.1 identified by Glimmer3 YP_001384604.1 identified by Glimmer3 YP_001384605.1 identified by match to protein family HMM PF01148 YP_001384606.1 catalyzes the formation of UDP pyrophosphate from isopentenyl pyrophosphate YP_001384607.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001384608.1 Catalyzes the phosphorylation of UMP to UDP YP_001384609.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001384610.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001384611.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_001384612.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_001384613.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_001384614.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368 YP_001384615.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_001384616.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001384617.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_001384618.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_001384619.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001384620.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001384621.1 Essential for efficient processing of 16S rRNA YP_001384623.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001384624.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_001384625.1 identified by match to protein family HMM PF04297 YP_001384626.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_001384627.1 identified by match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168 YP_001384628.1 identified by Glimmer3 YP_001384629.1 identified by match to protein family HMM PF04055 YP_001384630.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_001384631.1 carries the fatty acid chain in fatty acid biosynthesis YP_001384632.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_001384633.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001384634.1 identified by match to protein family HMM PF02620 YP_001384635.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_001384636.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_001384638.1 Selenoprotein. identified by similarity to GB:CAB38127.2 YP_001384639.1 identified by Glimmer3 YP_001384640.1 identified by match to protein family HMM PF09338 YP_001384642.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001384645.1 identified by Glimmer3 YP_001384646.1 identified by match to protein family HMM PF00324 YP_001384648.1 identified by Glimmer3 YP_001384649.1 identified by Glimmer3 YP_001384650.1 identified by match to protein family HMM PF05544 YP_001384653.1 Selenoprotein. identified by similarity to GB:CAB38127.2 YP_001384654.1 identified by Glimmer3 YP_001384655.1 identified by match to protein family HMM PF09338 YP_001384656.1 identified by Glimmer3 YP_001384657.1 identified by match to protein family HMM PF01512 YP_001384658.1 identified by Glimmer3 YP_001384659.1 identified by Glimmer3 YP_001384661.1 identified by Glimmer3 YP_001384663.1 identified by Glimmer3 YP_001384665.1 identified by match to protein family HMM PF01512 YP_001384666.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00571; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_001384667.1 identified by match to protein family HMM PF05636 YP_001384668.1 identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871 YP_001384670.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001384671.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_001384672.1 catalyzes branch migration in Holliday junction intermediates YP_001384673.1 identified by match to protein family HMM PF02734 YP_001384674.1 identified by match to protein family HMM PF03780 YP_001384675.1 required for 70S ribosome assembly YP_001384676.1 identified by Glimmer3 YP_001384678.1 identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378 YP_001384679.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_001384680.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_001384681.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714 YP_001384682.1 identified by match to protein family HMM PF00481 YP_001384683.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_001384684.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_001384685.1 identified by match to protein family HMM PF04298 YP_001384686.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_001384687.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001384688.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_001384689.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_001384690.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_001384691.1 Essential for recycling GMP and indirectly, cGMP YP_001384692.1 identified by match to protein family HMM PF04025 YP_001384693.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255 YP_001384694.1 identified by match to protein family HMM PF00710 YP_001384696.1 identified by match to protein family HMM TIGR02836 YP_001384697.1 identified by Glimmer3 YP_001384699.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001384700.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001384701.1 identified by match to protein family HMM PF04459 YP_001384702.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_001384703.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_001384704.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_001384705.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_001384706.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136 YP_001384707.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_001384708.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001384709.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_001384710.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_001384711.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_001384712.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin YP_001384713.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation YP_001384714.1 identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854 YP_001384715.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_001384716.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_001384717.1 identified by match to protein family HMM PF00535 YP_001384718.1 identified by Glimmer3 YP_001384719.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_001384720.1 identified by match to protein family HMM PF01488; match to protein family HMM PF08501 YP_001384721.1 identified by match to protein family HMM PF04545 YP_001384722.1 identified by Glimmer3 YP_001384723.1 identified by match to protein family HMM PF01381 YP_001384724.1 identified by match to protein family HMM PF01381 YP_001384725.1 identified by Glimmer3 YP_001384727.1 identified by Glimmer3 YP_001384728.1 identified by match to protein family HMM PF01076 YP_001384729.1 identified by match to protein family HMM PF02534 YP_001384730.1 identified by match to protein family HMM PF01381 YP_001384731.1 identified by match to protein family HMM PF01510 YP_001384734.1 identified by Glimmer3 YP_001384735.1 identified by Glimmer3 YP_001384736.1 identified by Glimmer3 YP_001384737.1 identified by similarity to GB:AAX53493.1 YP_001384738.1 identified by Glimmer3 YP_001384739.1 identified by similarity to GB:BAD74826.1 YP_001384740.1 identified by similarity to GB:BAD74827.1 YP_001384742.1 identified by match to protein family HMM TIGR01760 YP_001384743.1 identified by similarity to GB:AAK79849.1 YP_001384744.1 identified by match to protein family HMM TIGR01603 YP_001384745.1 identified by similarity to GB:AAU40455.1 YP_001384746.1 identified by match to protein family HMM PF07772; match to protein family HMM TIGR01725 YP_001384747.1 identified by match to protein family HMM TIGR01563 YP_001384748.1 identified by match to protein family HMM PF05135; match to protein family HMM TIGR01560 YP_001384749.1 identified by match to protein family HMM PF07498 YP_001384750.1 identified by match to protein family HMM PF05065 YP_001384751.1 identified by match to protein family HMM PF00574 YP_001384752.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_001384753.1 identified by match to protein family HMM PF03354 YP_001384754.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558 YP_001384755.1 identified by similarity to GB:AAK79179.1 YP_001384756.1 identified by similarity to GB:ABG87918.1 YP_001384757.1 identified by similarity to GB:AAF19142.1 YP_001384758.1 identified by Glimmer3 YP_001384759.1 identified by Glimmer3 YP_001384760.1 identified by similarity to GB:AAB59285.1 YP_001384761.1 identified by match to protein family HMM PF00589 YP_001384762.1 identified by similarity to GB:AAK79876.1 YP_001384763.1 identified by Glimmer3 YP_001384764.1 identified by Glimmer3 YP_001384765.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_001384766.1 identified by Glimmer3 YP_001384767.1 identified by similarity to GB:ABK61948.1 YP_001384768.1 identified by Glimmer3 YP_001384769.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_001384770.1 identified by Glimmer3 YP_001384771.1 identified by match to protein family HMM PF03819 YP_001384772.1 identified by Glimmer3 YP_001384773.1 identified by match to protein family HMM TIGR01714 YP_001384774.1 identified by similarity to GB:ABB16063.1 YP_001384775.1 identified by similarity to GB:ABK61203.1 YP_001384776.1 identified by Glimmer3 YP_001384777.1 identified by Glimmer3 YP_001384778.1 identified by Glimmer3 YP_001384780.1 identified by Glimmer3 YP_001384781.1 identified by match to protein family HMM PF01381 YP_001384782.1 identified by match to protein family HMM PF01381 YP_001384783.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_001384784.1 identified by match to protein family HMM PF04542 YP_001384787.1 identified by Glimmer3 YP_001384788.1 identified by match to protein family HMM TIGR02271 YP_001384789.1 identified by match to protein family HMM TIGR02271 YP_001384790.1 identified by Glimmer3 YP_001384792.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616 YP_001384794.1 identified by Glimmer3 YP_001384795.1 identified by match to protein family HMM PF00905 YP_001384796.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_001384797.1 identified by match to protein family HMM PF01136 YP_001384798.1 identified by match to protein family HMM PF01596 YP_001384799.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_001384800.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_001384801.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_001384802.1 identified by match to protein family HMM PF01475 YP_001384803.1 identified by match to protein family HMM PF06949 YP_001384804.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_001384805.1 identified by match to protein family HMM PF06135 YP_001384806.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001384807.1 identified by match to protein family HMM PF01594 YP_001384809.1 identified by match to protein family HMM PF01592 YP_001384810.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212 YP_001384811.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_001384812.1 identified by match to protein family HMM PF00004 YP_001384813.1 identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856 YP_001384814.1 identified by match to protein family HMM PF03547 YP_001384815.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001384816.1 identified by match to protein family HMM PF01206 YP_001384817.1 catalyzes the formation of L-proline from L-ornithine YP_001384818.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001384819.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001384822.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857 YP_001384823.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001384824.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01326 YP_001384826.1 identified by match to protein family HMM PF00501 YP_001384827.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545 YP_001384829.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550 YP_001384830.1 identified by match to protein family HMM PF00583 YP_001384834.1 identified by Glimmer3 YP_001384835.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_001384836.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_001384837.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001384838.1 identified by match to protein family HMM PF06738 YP_001384840.1 identified by match to protein family HMM PF02583 YP_001384841.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001384843.1 identified by Glimmer3 YP_001384844.1 identified by Glimmer3 YP_001384845.1 identified by Glimmer3 YP_001384847.1 catalyzes the removal of amino acids from the N termini of peptides YP_001384848.1 identified by match to protein family HMM PF01544 YP_001384849.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_001384850.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_001384851.1 identified by match to protein family HMM PF05979 YP_001384852.1 identified by match to protein family HMM PF09335 YP_001384853.1 identified by match to protein family HMM PF09335 YP_001384854.1 identified by match to protein family HMM PF02754 YP_001384857.1 identified by match to protein family HMM PF00535 YP_001384858.1 identified by match to protein family HMM PF00581 YP_001384859.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_001384860.1 identified by Glimmer3 YP_001384862.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_001384864.1 identified by match to protein family HMM PF01156 YP_001384865.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_001384866.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex YP_001384867.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_001384868.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex YP_001384869.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex YP_001384870.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex YP_001384871.1 identified by match to protein family HMM PF01991 YP_001384872.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits YP_001384873.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel. YP_001384875.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055 YP_001384877.1 identified by match to protein family HMM PF00882 YP_001384879.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001384880.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_001384881.1 identified by Glimmer3 YP_001384882.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene YP_001384883.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene YP_001384886.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937 YP_001384887.1 identified by match to protein family HMM PF07238 YP_001384888.1 identified by match to protein family HMM PF01656 YP_001384889.1 positive regulator of class III flagellar genes YP_001384890.1 membrane protein involved in the flagellar export apparatus YP_001384891.1 FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined YP_001384892.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402 YP_001384893.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_001384895.1 identified by match to protein family HMM PF00691; match to protein family HMM PF03748 YP_001384896.1 identified by match to protein family HMM PF01618 YP_001384897.1 identified by match to protein family HMM PF06289 YP_001384898.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429 YP_001384899.1 identified by match to protein family HMM TIGR02530 YP_001384900.1 identified by match to protein family HMM PF03963 YP_001384901.1 identified by match to protein family HMM PF02120 YP_001384902.1 identified by match to protein family HMM TIGR02473 YP_001384903.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545 YP_001384905.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001384906.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_001384907.1 forms a junction between the M-ring and FlgB during flagella biosynthesis YP_001384908.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_001384909.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_001384910.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001384912.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001384913.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_001384916.1 identified by match to protein family HMM PF00614 YP_001384918.1 identified by Glimmer3 YP_001384919.1 identified by match to protein family HMM PF04892 YP_001384920.1 identified by match to protein family HMM PF01943 YP_001384921.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001384922.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666 YP_001384923.1 identified by match to protein family HMM PF02348; match to protein family HMM PF04101 YP_001384925.1 identified by match to protein family HMM PF05855 YP_001384927.1 identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031 YP_001384928.1 identified by match to protein family HMM PF02397 YP_001384929.1 identified by match to protein family HMM TIGR01007 YP_001384930.1 identified by match to protein family HMM PF02811 YP_001384931.1 identified by match to protein family HMM PF02706 YP_001384932.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_001384934.1 identified by Glimmer3 YP_001384936.1 identified by match to protein family HMM PF00015 YP_001384937.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001384940.1 identified by Glimmer3 YP_001384942.1 identified by match to protein family HMM PF00657 YP_001384944.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719 YP_001384945.1 identified by match to protein family HMM PF00534 YP_001384946.1 identified by Glimmer3 YP_001384947.1 identified by match to protein family HMM PF00534 YP_001384949.1 identified by Glimmer3 YP_001384951.1 identified by match to protein family HMM PF08241 YP_001384952.1 identified by match to protein family HMM PF00534 YP_001384953.1 identified by Glimmer3 YP_001384954.1 identified by match to protein family HMM PF04989 YP_001384955.1 identified by match to protein family HMM PF08241 YP_001384956.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370 YP_001384957.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_001384958.1 identified by match to protein family HMM PF08242; match to protein family HMM PF08421; match to protein family HMM PF08484 YP_001384959.1 identified by match to protein family HMM PF04055 YP_001384960.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623 YP_001384961.1 identified by Glimmer3 YP_001384962.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666 YP_001384963.1 identified by match to protein family HMM PF02348 YP_001384964.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_001384965.1 undetermined role; similar to CarB protein but much smaller YP_001384966.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001384967.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001384968.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719 YP_001384969.1 identified by similarity to PIR:C97171 YP_001384970.1 identified by match to protein family HMM PF01973 YP_001384971.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535 YP_001384972.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001384973.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001384975.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195 YP_001384976.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_001384978.1 identified by match to protein family HMM PF03646 YP_001384979.1 affects carbohydrate metabolism; has regulatory role in many processes YP_001384980.1 binds to flagellin and appears to stabilize flagellin during flagella assembly YP_001384981.1 identified by match to protein family HMM PF00669; match to protein family HMM TIGR02550 YP_001384982.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492 YP_001384983.1 identified by match to protein family HMM PF05130 YP_001384984.1 identified by match to protein family HMM PF04316 YP_001384985.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001384986.1 identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397 YP_001384987.1 identified by match to protein family HMM PF01584 YP_001384988.1 identified by match to protein family HMM PF00072 YP_001384989.1 identified by match to protein family HMM PF04509 YP_001384990.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194 YP_001384991.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_001384992.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01339 YP_001384993.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_001384994.1 identified by match to protein family HMM PF01584 YP_001384995.1 identified by match to protein family HMM PF03961 YP_001384996.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830 YP_001384997.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001384998.1 identified by match to protein family HMM PF01063 YP_001384999.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_001385001.1 identified by Glimmer3 YP_001385002.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 YP_001385003.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001385004.1 identified by Glimmer3 YP_001385005.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001385006.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_001385007.1 identified by match to protein family HMM PF01261 YP_001385008.1 identified by match to protein family HMM PF01436 YP_001385009.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_001385011.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383 YP_001385012.1 identified by match to protein family HMM PF04309 YP_001385013.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001385014.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001385016.1 identified by match to protein family HMM PF00999 YP_001385018.1 identified by Glimmer3 YP_001385019.1 identified by match to protein family HMM PF01522 YP_001385020.1 identified by Glimmer3 YP_001385021.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_001385022.1 identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753 YP_001385023.1 identified by Glimmer3 YP_001385024.1 identified by Glimmer3 YP_001385025.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001385026.1 identified by match to protein family HMM PF00165; match to protein family HMM PF07883 YP_001385027.1 identified by match to protein family HMM PF02016 YP_001385028.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311 YP_001385029.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_001385030.1 identified by match to protein family HMM PF01906 YP_001385031.1 identified by match to protein family HMM PF04892 YP_001385033.1 identified by match to protein family HMM PF00005 YP_001385034.1 identified by match to protein family HMM PF00392 YP_001385035.1 identified by match to protein family HMM PF04892 YP_001385036.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_001385038.1 identified by match to protein family HMM PF02073 YP_001385039.1 identified by match to protein family HMM PF05504 YP_001385040.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001385041.1 identified by match to protein family HMM PF03323 YP_001385042.1 identified by Glimmer3 YP_001385043.1 identified by Glimmer3 YP_001385044.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_001385045.1 identified by match to protein family HMM PF01522 YP_001385046.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_001385048.1 identified by Glimmer3 YP_001385049.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001385050.1 identified by match to protein family HMM PF00582 YP_001385051.1 identified by match to protein family HMM PF00037 YP_001385052.1 catalyzes the formation of glutamate from glutamine YP_001385053.1 identified by match to protein family HMM PF06725 YP_001385055.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001385057.1 identified by match to protein family HMM PF00268 YP_001385058.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001385062.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_001385063.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines YP_001385064.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001385065.1 identified by match to protein family HMM PF00156 YP_001385066.1 identified by match to protein family HMM PF02698 YP_001385067.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_001385068.1 identified by match to protein family HMM PF00005 YP_001385070.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_001385071.1 identified by Glimmer3 YP_001385072.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001385073.1 identified by match to protein family HMM PF00293 YP_001385074.1 identified by match to protein family HMM PF01475 YP_001385075.1 identified by Glimmer3 YP_001385076.1 identified by match to protein family HMM PF00704 YP_001385077.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_001385078.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00221 YP_001385079.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001385080.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001385081.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_001385082.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998 YP_001385083.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001385084.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797 YP_001385085.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_001385086.1 identified by match to protein family HMM PF00301; match to protein family HMM PF00441; match to protein family HMM PF00766; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001385087.1 identified by match to protein family HMM PF00665 YP_001385088.1 identified by match to protein family HMM PF03613 YP_001385089.1 identified by match to protein family HMM PF06115 YP_001385090.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_001385091.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_001385093.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_001385094.1 identified by match to protein family HMM PF00941 YP_001385095.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_001385097.1 identified by match to protein family HMM PF00999 YP_001385098.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001385099.1 identified by Glimmer3 YP_001385100.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_001385101.1 identified by match to protein family HMM PF00005 YP_001385102.1 identified by match to protein family HMM PF02463 YP_001385103.1 identified by similarity to GB:AAS43498.1 YP_001385104.1 identified by Glimmer3 YP_001385105.1 identified by Glimmer3 YP_001385106.1 identified by Glimmer3 YP_001385107.1 identified by Glimmer3 YP_001385108.1 identified by Glimmer3 YP_001385109.1 identified by Glimmer3 YP_001385110.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_001385111.1 identified by similarity to GB:BAD50088.1 YP_001385112.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510 YP_001385115.1 identified by similarity to GB:BAC57539.1 YP_001385116.1 identified by match to protein family HMM TIGR02937 YP_001385117.1 identified by Glimmer3 YP_001385118.1 identified by match to protein family HMM TIGR01446 YP_001385119.1 identified by Glimmer3 YP_001385120.1 identified by match to protein family HMM TIGR01764 YP_001385121.1 identified by similarity to GB:CAJ70012.1 YP_001385122.1 identified by match to protein family HMM PF01381 YP_001385123.1 identified by match to protein family HMM PF00589 YP_001385124.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_001385125.1 identified by Glimmer3 YP_001385126.1 identified by match to protein family HMM PF00884 YP_001385127.1 identified by match to protein family HMM PF01925 YP_001385128.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001385129.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506 YP_001385130.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_001385131.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_001385132.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_001385133.1 identified by match to protein family HMM PF00753 YP_001385134.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524 YP_001385136.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001385137.1 involved in de novo purine biosynthesis YP_001385138.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_001385139.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001385140.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_001385141.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001385142.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_001385143.1 identified by Glimmer3 YP_001385144.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; match to protein family HMM TIGR03311 YP_001385145.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases YP_001385146.1 in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS YP_001385147.1 with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase YP_001385148.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR03316 YP_001385149.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_001385150.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_001385151.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate YP_001385152.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001385153.1 identified by match to protein family HMM TIGR03172 YP_001385154.1 identified by match to protein family HMM TIGR03310 YP_001385155.1 identified by match to protein family HMM TIGR03309 YP_001385156.1 identified by match to protein family HMM PF02625 YP_001385158.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032 YP_001385159.1 identified by match to protein family HMM PF00005 YP_001385160.1 identified by match to protein family HMM PF01497 YP_001385161.1 identified by Glimmer3 YP_001385162.1 identified by match to protein family HMM PF00657 YP_001385163.1 identified by match to protein family HMM PF02698 YP_001385164.1 identified by match to protein family HMM PF00860 YP_001385165.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001385167.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001385168.1 identified by Glimmer3 YP_001385169.1 identified by match to protein family HMM PF01546 YP_001385171.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_001385172.1 identified by match to protein family HMM PF01910 YP_001385173.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_001385174.1 identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134 YP_001385175.1 identified by match to protein family HMM PF04456 YP_001385178.1 identified by match to protein family HMM PF00005 YP_001385179.1 identified by match to protein family HMM PF00392 YP_001385181.1 identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506 YP_001385182.1 identified by match to protein family HMM PF00037 YP_001385183.1 identified by match to protein family HMM PF00027 YP_001385184.1 identified by match to protein family HMM PF07486 YP_001385185.1 identified by Glimmer3 YP_001385186.1 identified by match to protein family HMM PF07883 YP_001385187.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_001385188.1 identified by match to protein family HMM PF03009 YP_001385190.1 identified by match to protein family HMM PF00282 YP_001385191.1 identified by Glimmer3 YP_001385192.1 identified by Glimmer3 YP_001385193.1 identified by Glimmer3 YP_001385194.1 identified by match to protein family HMM PF02591 YP_001385195.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_001385196.1 identified by match to protein family HMM PF04816 YP_001385198.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_001385199.1 synthesizes RNA primers at the replication forks YP_001385200.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_001385201.1 identified by match to protein family HMM TIGR02906 YP_001385202.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001385203.1 identified by match to protein family HMM PF00571; match to protein family HMM PF08279 YP_001385204.1 identified by match to protein family HMM PF00627 YP_001385205.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001385206.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_001385207.1 identified by match to protein family HMM PF01219; match to protein family HMM PF01569 YP_001385208.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_001385209.1 identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277 YP_001385210.1 identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876 YP_001385211.1 identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856 YP_001385212.1 identified by match to protein family HMM PF02637 YP_001385213.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001385214.1 identified by match to protein family HMM PF01230 YP_001385215.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_001385216.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_001385217.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_001385218.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_001385219.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001385220.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_001385221.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_001385222.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001385223.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001385225.1 identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867 YP_001385226.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination YP_001385227.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001385228.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_001385229.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360 YP_001385231.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690 YP_001385232.1 identified by match to protein family HMM PF07556 YP_001385233.1 identified by Glimmer3 YP_001385234.1 identified by Glimmer3 YP_001385235.1 identified by match to protein family HMM PF01381 YP_001385236.1 identified by match to protein family HMM PF01381 YP_001385237.1 identified by Glimmer3 YP_001385238.1 identified by similarity to GB:BAE47892.1 YP_001385239.1 identified by Glimmer3 YP_001385240.1 identified by Glimmer3 YP_001385241.1 identified by Glimmer3 YP_001385242.1 identified by Glimmer3 YP_001385243.1 identified by match to protein family HMM PF01381 YP_001385244.1 identified by Glimmer3 YP_001385245.1 identified by similarity to GB:CAC97788.1 YP_001385246.1 identified by match to protein family HMM PF01520; match to protein family HMM PF08239 YP_001385247.1 identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593 YP_001385248.1 identified by similarity to SP:P34020; match to protein family HMM PF01183 YP_001385249.1 identified by similarity to GB:BAB80843.1 YP_001385250.1 identified by similarity to GB:AAK79083.1 YP_001385251.1 identified by similarity to GB:AAO36605.1 YP_001385252.1 identified by similarity to GB:AAO36606.1 YP_001385253.1 identified by similarity to GB:AAX53493.1 YP_001385254.1 identified by Glimmer3 YP_001385255.1 identified by similarity to GB:BAD74826.1 YP_001385256.1 identified by similarity to GB:BAD74827.1 YP_001385257.1 identified by similarity to GB:AAS39346.1 YP_001385258.1 identified by match to protein family HMM TIGR01760 YP_001385259.1 identified by Glimmer3 YP_001385260.1 identified by similarity to GB:AAK79849.1 YP_001385261.1 identified by match to protein family HMM TIGR01603 YP_001385262.1 identified by similarity to GB:AAU40455.1 YP_001385263.1 identified by match to protein family HMM PF07772; match to protein family HMM TIGR01725 YP_001385264.1 identified by match to protein family HMM TIGR01563 YP_001385265.1 identified by similarity to GB:CAC85562.1 YP_001385267.1 identified by match to protein family HMM PF00574 YP_001385268.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_001385269.1 identified by match to protein family HMM PF03354 YP_001385271.1 identified by Glimmer3 YP_001385272.1 identified by match to protein family HMM PF00589 YP_001385273.1 identified by similarity to GB:AAK79876.1 YP_001385274.1 identified by similarity to GB:AAK42408.1 YP_001385275.1 identified by Glimmer3 YP_001385276.1 identified by similarity to GB:AAO35664.1 YP_001385277.1 identified by Glimmer3 YP_001385278.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_001385279.1 identified by Glimmer3 YP_001385280.1 identified by Glimmer3 YP_001385281.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_001385282.1 identified by Glimmer3 YP_001385283.1 identified by similarity to GB:AAM25375.1 YP_001385284.1 identified by Glimmer3 YP_001385285.1 identified by similarity to GB:AAU40346.1 YP_001385286.1 identified by match to protein family HMM TIGR01714 YP_001385287.1 identified by similarity to GB:ABB16063.1 YP_001385288.1 identified by similarity to GB:ABK61203.1 YP_001385289.1 identified by Glimmer3 YP_001385291.1 identified by match to protein family HMM TIGR01764 YP_001385292.1 identified by match to protein family HMM PF01381 YP_001385293.1 identified by match to protein family HMM PF01381 YP_001385294.1 identified by match to protein family HMM PF00589 YP_001385295.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475 YP_001385296.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_001385297.1 Selenoprotein. identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476 YP_001385298.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426 YP_001385299.1 identified by match to protein family HMM PF00768 YP_001385300.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_001385301.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_001385302.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_001385303.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488 YP_001385304.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_001385305.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_001385306.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001385307.1 involved in the peptidyltransferase reaction during translation YP_001385308.1 identified by match to protein family HMM PF04327 YP_001385309.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_001385310.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_001385312.1 identified by match to protein family HMM PF04055 YP_001385313.1 identified by match to protein family HMM PF02163 YP_001385314.1 identified by match to protein family HMM PF01551 YP_001385315.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_001385316.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_001385317.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_001385318.1 blocks the formation of polar Z-ring septums YP_001385319.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_001385320.1 identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426 YP_001385321.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001385322.1 functions in MreBCD complex in some organisms YP_001385323.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_001385324.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_001385328.1 identified by match to protein family HMM PF02567 YP_001385329.1 identified by match to protein family HMM PF01842 YP_001385330.1 identified by Glimmer3 YP_001385331.1 identified by match to protein family HMM PF01464 YP_001385332.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_001385333.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_001385334.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001385335.1 identified by match to protein family HMM PF01520; match to protein family HMM PF08239 YP_001385340.1 identified by Glimmer3 YP_001385341.1 identified by Glimmer3 YP_001385344.1 identified by Glimmer3 YP_001385348.1 identified by match to protein family HMM PF00656 YP_001385351.1 identified by Glimmer3 YP_001385352.1 identified by Glimmer3 YP_001385353.1 identified by Glimmer3 YP_001385359.1 identified by Glimmer3 YP_001385363.1 identified by match to protein family HMM TIGR01714 YP_001385365.1 identified by match to protein family HMM PF01381 YP_001385366.1 identified by match to protein family HMM PF01381 YP_001385367.1 identified by Glimmer3 YP_001385368.1 identified by match to protein family HMM PF03062 YP_001385369.1 identified by Glimmer3 YP_001385370.1 identified by match to protein family HMM PF00269 YP_001385371.1 identified by Glimmer3 YP_001385372.1 identified by Glimmer3 YP_001385373.1 identified by Glimmer3 YP_001385374.1 identified by Glimmer3 YP_001385375.1 identified by match to protein family HMM PF04246 YP_001385376.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001385377.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001385378.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001385379.1 identified by match to protein family HMM PF00753 YP_001385380.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_001385381.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_001385382.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001385383.1 identified by match to protein family HMM PF01368 YP_001385384.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_001385385.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_001385386.1 identified by match to protein family HMM PF04055 YP_001385387.1 identified by Glimmer3 YP_001385389.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_001385390.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_001385391.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001385392.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001385393.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001385395.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_001385396.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257 YP_001385397.1 identified by match to protein family HMM PF03130 YP_001385398.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001385399.1 identified by match to protein family HMM PF01909 YP_001385401.1 identified by match to protein family HMM PF00301 YP_001385402.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156 YP_001385403.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_001385404.1 identified by match to protein family HMM TIGR02832 YP_001385405.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_001385406.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839 YP_001385407.1 identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845 YP_001385408.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838 YP_001385409.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore. YP_001385410.1 binds to sigma F preventing its association with RNA polymerase during sporulation YP_001385411.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886 YP_001385413.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884 YP_001385414.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_001385415.1 identified by match to protein family HMM PF02397 YP_001385416.1 identified by match to protein family HMM PF01943 YP_001385417.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_001385418.1 identified by match to protein family HMM PF00534 YP_001385419.1 identified by match to protein family HMM PF00534 YP_001385420.1 identified by match to protein family HMM PF04932 YP_001385421.1 identified by match to protein family HMM PF00534 YP_001385422.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_001385423.1 identified by match to protein family HMM PF00534 YP_001385424.1 identified by Glimmer3 YP_001385426.1 identified by match to protein family HMM PF00560 YP_001385427.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943 YP_001385428.1 identified by match to protein family HMM PF00132 YP_001385429.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_001385430.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03446; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_001385431.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001385432.1 identified by match to protein family HMM PF01520; match to protein family HMM PF07495 YP_001385433.1 identified by match to protein family HMM PF01520; match to protein family HMM PF07495 YP_001385434.1 identified by Glimmer3 YP_001385435.1 identified by match to protein family HMM PF01832; match to protein family HMM PF07495 YP_001385436.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_001385437.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001385438.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_001385439.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001385440.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711; match to protein family HMM PF05889 YP_001385441.1 identified by Glimmer3 YP_001385442.1 identified by match to protein family HMM PF01515 YP_001385443.1 identified by match to protein family HMM PF01070; match to protein family HMM PF01180 YP_001385444.1 identified by match to protein family HMM PF04463 YP_001385445.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange YP_001385446.1 identified by match to protein family HMM PF01136 YP_001385448.1 identified by Glimmer3 YP_001385449.1 identified by Glimmer3 YP_001385450.1 identified by Glimmer3 YP_001385451.1 identified by match to protein family HMM PF05164 YP_001385452.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001385453.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001385454.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_001385455.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254 YP_001385456.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_001385457.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001385458.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_001385459.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_001385460.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001385461.1 identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834 YP_001385464.1 identified by match to protein family HMM PF00005 YP_001385465.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_001385466.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001385468.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_001385469.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_001385470.1 identified by match to protein family HMM PF00528 YP_001385471.1 identified by match to protein family HMM PF00528 YP_001385472.1 identified by match to protein family HMM PF00496 YP_001385473.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_001385474.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001385475.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_001385476.1 identified by match to protein family HMM PF00155 YP_001385477.1 identified by Glimmer3 YP_001385478.1 identified by match to protein family HMM PF00132; match to protein family HMM PF08503 YP_001385479.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_001385481.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764 YP_001385485.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_001385486.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001385487.1 identified by match to protein family HMM PF00583 YP_001385488.1 identified by match to protein family HMM PF00005 YP_001385491.1 identified by match to protein family HMM PF09084 YP_001385492.1 identified by Glimmer3 YP_001385493.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001385494.1 identified by match to protein family HMM PF00005 YP_001385495.1 identified by match to protein family HMM PF00528 YP_001385496.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720 YP_001385497.1 identified by match to protein family HMM PF01841 YP_001385498.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_001385499.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_001385500.1 identified by match to protein family HMM PF06177 YP_001385501.1 identified by match to protein family HMM PF01613 YP_001385502.1 identified by match to protein family HMM PF01471; match to protein family HMM PF03734 YP_001385504.1 identified by match to protein family HMM PF06865 YP_001385505.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_001385506.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901 YP_001385507.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_001385508.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001385509.1 identified by match to protein family HMM PF00533 YP_001385510.1 identified by Glimmer3 YP_001385511.1 identified by match to protein family HMM PF00092 YP_001385512.1 identified by match to protein family HMM PF07728 YP_001385515.1 identified by match to protein family HMM PF00037 YP_001385518.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001385519.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001385520.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001385521.1 identified by match to protein family HMM PF01012 YP_001385522.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001385523.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_001385524.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_001385525.1 identified by match to protein family HMM PF00378 YP_001385526.1 identified by Glimmer3 YP_001385527.1 identified by match to protein family HMM PF01541 YP_001385528.1 identified by match to protein family HMM PF00860 YP_001385529.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001385530.1 identified by Glimmer3 YP_001385531.1 identified by Glimmer3 YP_001385532.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001385533.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_001385535.1 identified by match to protein family HMM PF03009 YP_001385536.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001385537.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_001385538.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493 YP_001385539.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_001385541.1 identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731 YP_001385543.1 identified by match to protein family HMM PF01475 YP_001385544.1 identified by match to protein family HMM PF01547 YP_001385546.1 identified by match to protein family HMM PF08279 YP_001385548.1 identified by Glimmer3 YP_001385549.1 identified by Glimmer3 YP_001385550.1 identified by match to protein family HMM PF02517 YP_001385551.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001385552.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_001385553.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02902 YP_001385554.1 binds and unfolds substrates as part of the ClpXP protease YP_001385555.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_001385556.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_001385557.1 identified by match to protein family HMM PF01261 YP_001385559.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001385560.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_001385561.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+) YP_001385562.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_001385563.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857 YP_001385564.1 involved in the allosteric regulation of aspartate carbamoyltransferase YP_001385565.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001385566.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001385568.1 identified by match to protein family HMM PF06050 YP_001385569.1 identified by match to protein family HMM PF06050 YP_001385571.1 identified by match to protein family HMM PF00005 YP_001385572.1 identified by similarity to GB:CAJ69248.1 YP_001385573.1 identified by Glimmer3 YP_001385574.1 identified by Glimmer3 YP_001385578.1 identified by match to protein family HMM PF03773 YP_001385579.1 identified by Glimmer3 YP_001385580.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_001385581.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_001385583.1 identified by similarity to GB:AAM23887.1 YP_001385584.1 identified by match to protein family HMM PF00496 YP_001385585.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001385586.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001385587.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_001385588.1 identified by match to protein family HMM PF00375 YP_001385590.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_001385591.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 YP_001385592.1 identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531 YP_001385593.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001385594.1 identified by match to protein family HMM PF01464 YP_001385595.1 identified by match to protein family HMM PF07495 YP_001385596.1 identified by Glimmer3 YP_001385597.1 identified by match to protein family HMM PF02639 YP_001385598.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_001385600.1 identified by match to protein family HMM PF00440 YP_001385601.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001385602.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001385604.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001385605.1 identified by match to protein family HMM PF01012 YP_001385606.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001385607.1 identified by match to protein family HMM PF06050 YP_001385608.1 identified by match to protein family HMM PF06050 YP_001385609.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001385610.1 identified by match to protein family HMM PF02515 YP_001385611.1 identified by match to protein family HMM PF00501 YP_001385612.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_001385613.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001385614.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_001385615.1 identified by match to protein family HMM PF01171 YP_001385616.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001385617.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001385618.1 identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906 YP_001385619.1 identified by match to protein family HMM PF09335 YP_001385620.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906 YP_001385621.1 identified by match to protein family HMM PF00730; match to protein family HMM PF07934 YP_001385622.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_001385623.1 identified by match to protein family HMM PF00175 YP_001385624.1 modulates transcription in response to the NADH/NAD(+) redox state YP_001385625.1 identified by match to protein family HMM PF00005 YP_001385626.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_001385627.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694 YP_001385628.1 identified by match to protein family HMM PF02554 YP_001385629.1 identified by match to protein family HMM PF05193; match to protein family HMM PF08367 YP_001385630.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_001385631.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001385632.1 identified by match to protein family HMM PF05866 YP_001385633.1 identified by Glimmer3 YP_001385634.1 identified by match to protein family HMM PF07992 YP_001385637.1 identified by match to protein family HMM PF01297 YP_001385638.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001385639.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_001385640.1 identified by match to protein family HMM PF00814 YP_001385641.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_001385642.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001385644.1 identified by match to protein family HMM PF04326 YP_001385646.1 identified by Glimmer3 YP_001385647.1 identified by match to protein family HMM PF01569 YP_001385648.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503 YP_001385649.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001385650.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001385651.1 identified by Glimmer3 YP_001385652.1 identified by match to protein family HMM PF01880; match to protein family HMM PF06397; match to protein family HMM TIGR00319; match to protein family HMM TIGR00320; match to protein family HMM TIGR00332 YP_001385654.1 identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205 YP_001385655.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_001385656.1 identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657 YP_001385657.1 catalyzes the removal of amino acids from the N termini of peptides YP_001385658.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001385661.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_001385662.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases YP_001385663.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001385664.1 identified by match to protein family HMM PF01541 YP_001385665.1 identified by Glimmer3 YP_001385666.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815 YP_001385667.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001385668.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001385670.1 identified by match to protein family HMM PF00005 YP_001385673.1 identified by match to protein family HMM PF05913 YP_001385674.1 identified by match to protein family HMM PF01869 YP_001385675.1 identified by match to protein family HMM PF02255 YP_001385676.1 identified by match to protein family HMM PF02302 YP_001385677.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610; match to protein family HMM PF07728 YP_001385678.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_001385679.1 identified by match to protein family HMM PF02056 YP_001385680.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001385681.1 identified by match to protein family HMM PF00589 YP_001385682.1 identified by match to protein family HMM PF02675; match to protein family HMM TIGR03330 YP_001385685.1 identified by match to protein family HMM PF05368 YP_001385686.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF03602; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_001385688.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248 YP_001385689.1 identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_001385690.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_001385691.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_001385692.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_001385693.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_001385694.1 identified by match to protein family HMM PF03668 YP_001385695.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_001385696.1 identified by match to protein family HMM PF02811 YP_001385697.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001385698.1 identified by match to protein family HMM PF04307 YP_001385699.1 identified by match to protein family HMM PF01336; match to protein family HMM PF01966 YP_001385700.1 identified by match to protein family HMM PF00905 YP_001385701.1 identified by match to protein family HMM PF01098 YP_001385702.1 identified by match to protein family HMM PF00498 YP_001385703.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_001385704.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001385706.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_001385707.1 identified by match to protein family HMM PF02687 YP_001385708.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673 YP_001385709.1 identified by match to protein family HMM PF02588 YP_001385710.1 identified by Glimmer3 YP_001385711.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001385712.1 identified by match to protein family HMM PF00456 YP_001385713.1 identified by match to protein family HMM PF02452 YP_001385715.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_001385717.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_001385718.1 identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 YP_001385720.1 identified by match to protein family HMM PF03553; match to protein family HMM PF06808 YP_001385721.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_001385723.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001385724.1 identified by match to protein family HMM PF00375 YP_001385725.1 identified by match to protein family HMM PF01569 YP_001385727.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_001385728.1 identified by match to protein family HMM PF00923 YP_001385729.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_001385730.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate YP_001385731.1 identified by match to protein family HMM PF03829 YP_001385732.1 identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825 YP_001385733.1 identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821 YP_001385734.1 identified by match to protein family HMM PF06923 YP_001385735.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_001385736.1 identified by match to protein family HMM PF04198 YP_001385737.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_001385738.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA YP_001385739.1 identified by match to protein family HMM PF00037 YP_001385741.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_001385742.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate YP_001385743.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_001385745.1 identified by match to protein family HMM PF07949 YP_001385746.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_001385747.1 identified by match to protein family HMM PF07486 YP_001385748.1 identified by match to protein family HMM PF01134; match to protein family HMM PF07992 YP_001385749.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_001385750.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01975 YP_001385751.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001385753.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_001385754.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229 YP_001385755.1 identified by match to protein family HMM PF00515 YP_001385756.1 identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723 YP_001385757.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid YP_001385758.1 identified by match to protein family HMM PF01520; match to protein family HMM TIGR02883 YP_001385759.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_001385760.1 forms a direct contact with the tRNA during translation YP_001385761.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001385762.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001385763.1 identified by match to protein family HMM PF02361 YP_001385764.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene YP_001385765.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene YP_001385766.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001385767.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001385768.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001385769.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001385770.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001385771.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_001385772.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001385774.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_001385775.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001385776.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001385777.1 late assembly protein YP_001385778.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001385779.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001385780.1 binds 5S rRNA along with protein L5 and L25 YP_001385781.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001385782.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001385783.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_001385784.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001385785.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001385786.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001385787.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001385788.1 one of the stabilizing components for the large ribosomal subunit YP_001385789.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001385790.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001385791.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001385792.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001385793.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001385794.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001385795.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001385796.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001385797.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001385798.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001385799.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001385800.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001385801.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001385802.1 identified by match to protein family HMM PF01248 YP_001385803.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001385804.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001385805.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001385806.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001385807.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001385808.1 binds directly to 23S ribosomal RNA YP_001385809.1 Modulates Rho-dependent transcription termination YP_001385810.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_001385811.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_001385812.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001385813.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001385814.1 identified by match to protein family HMM PF05991 YP_001385815.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_001385816.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_001385817.1 identified by match to protein family HMM PF00636 YP_001385818.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001385819.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01127 YP_001385820.1 identified by match to protein family HMM PF03129; match to protein family HMM PF04073 YP_001385821.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_001385822.1 identified by match to protein family HMM PF01850; match to protein family HMM PF01938 YP_001385824.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_001385825.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001385826.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001385827.1 identified by match to protein family HMM PF00217 YP_001385828.1 identified by match to protein family HMM PF02151 YP_001385829.1 identified by match to protein family HMM PF05848 YP_001385831.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001385832.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_001385833.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001385834.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_001385835.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001385837.1 identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_001385838.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_001385839.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_001385840.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_001385841.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_001385842.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_001385843.1 identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865 YP_001385844.1 identified by match to protein family HMM PF00575 YP_001385845.1 identified by match to protein family HMM PF04977 YP_001385846.1 identified by match to protein family HMM TIGR02893 YP_001385847.1 identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892 YP_001385848.1 identified by match to protein family HMM PF01479 YP_001385849.1 identified by match to protein family HMM PF00216 YP_001385850.1 identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444 YP_001385851.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_001385852.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851 YP_001385853.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_001385854.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_001385855.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001385856.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_001385857.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001385858.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001385859.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_001385860.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_001385861.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus YP_001385862.1 identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743 YP_001385863.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001385865.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906 YP_001385866.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001385868.1 catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate YP_001385869.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_001385872.1 identified by match to protein family HMM PF04055 YP_001385873.1 identified by match to protein family HMM PF00015; match to protein family HMM PF07700 YP_001385874.1 identified by match to protein family HMM PF01381 YP_001385876.1 identified by match to protein family HMM PF00160 YP_001385877.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_001385878.1 identified by match to protein family HMM PF00120 YP_001385880.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001385881.1 identified by match to protein family HMM PF00753 YP_001385883.1 identified by match to protein family HMM PF02810 YP_001385884.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_001385885.1 identified by match to protein family HMM PF07690 YP_001385886.1 identified by match to protein family HMM PF03358 YP_001385887.1 identified by match to protein family HMM PF00440; match to protein family HMM PF02796 YP_001385888.1 identified by match to protein family HMM PF00165 YP_001385889.1 identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500 YP_001385890.1 identified by match to protein family HMM PF00881 YP_001385892.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055 YP_001385894.1 catalyzes the formation of biotin from dethiobiotin and sulfur YP_001385895.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_001385896.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231 YP_001385897.1 identified by match to protein family HMM PF00474 YP_001385898.1 identified by match to protein family HMM PF00534 YP_001385899.1 identified by match to protein family HMM PF02811 YP_001385900.1 identified by match to protein family HMM PF08761 YP_001385901.1 identified by match to protein family HMM PF04657 YP_001385902.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001385903.1 identified by match to protein family HMM PF00082 YP_001385904.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001385905.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001385906.1 identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513 YP_001385907.1 identified by match to protein family HMM TIGR00515 YP_001385908.1 identified by match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514 YP_001385909.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_001385910.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_001385911.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001385912.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001385913.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_001385914.1 identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151 YP_001385915.1 identified by match to protein family HMM PF00550 YP_001385916.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747 YP_001385917.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_001385918.1 identified by match to protein family HMM PF03060 YP_001385919.1 identified by match to protein family HMM PF01551 YP_001385920.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_001385921.1 acts to load the DnaB helicase onto the initiation site during DNA replication YP_001385925.1 identified by match to protein family HMM PF03618 YP_001385926.1 identified by match to protein family HMM PF02629 YP_001385927.1 identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275 YP_001385928.1 identified by match to protein family HMM PF01643 YP_001385930.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001385931.1 identified by match to protein family HMM PF07992 YP_001385932.1 identified by Glimmer3 YP_001385933.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_001385934.1 unwinds double stranded DNA YP_001385935.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR02903 YP_001385936.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001385937.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_001385940.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001385941.1 identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621 YP_001385942.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001385943.1 identified by match to protein family HMM PF06050 YP_001385944.1 identified by match to protein family HMM PF06107 YP_001385945.1 identified by match to protein family HMM PF00924 YP_001385947.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977 YP_001385948.1 identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872 YP_001385949.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_001385950.1 identified by Glimmer3 YP_001385952.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_001385953.1 identified by match to protein family HMM PF01656 YP_001385954.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_001385955.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001385956.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001385957.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001385958.1 identified by match to protein family HMM PF01424 YP_001385959.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_001385960.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_001385961.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_001385962.1 in Escherichia coli transcription of this gene is enhanced by polyamines