-- dump date   	20140619_043105
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_001252553.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_001252554.1	binds the polymerase to DNA and acts as a sliding clamp
YP_001252555.1	Similar to Clostridium perfringens hypothetical protein Cpe0003 SWALL:Q8XPG0 (EMBL:AP003185) (68 aa) fasta scores: E(): 5.1e-16, 66.17 38d in 68 aa, and to Clostridium acetobutylicum small protein,ortholog of yaaa b.subtilis cac0003 SWALL:Q97N33 (EMBL:AE007513) (68 aa) fasta scores: E(): 1.2e-14, 64.7 id in 68 aa
YP_001252556.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_001252557.1	Similar to Clostridium perfringens hypothetical protein Cpe0005 SWALL:Q8XPF8 (EMBL:AP003185) (86 aa) fasta scores: E(): 3.2e-26, 84.7 38d in 85 aa, and to Clostridium acetobutylicum orfx SWALL:P94603 (EMBL:U35453) (87 aa) fasta scores: E(): 2.5e-25, 82.55 38d in 86 aa
YP_001252558.1	negatively supercoils closed circular double-stranded DNA
YP_001252559.1	negatively supercoils closed circular double-stranded DNA
YP_001252560.1	Similar to Clostridium tetani protein ctc00088 SWALL:Q899T0 (EMBL:AE015936) (167 aa) fasta scores: E(): 8.1e-17, 40.78 38d in 152 aa, and to Clostridium acetobutylicum predicted hd superfamily hydrolase cac0008 SWALL:Q97N30 (EMBL:AE007514) (158 aa) fasta scores: E(): 3.6e-16, 45.27 38d in 148 aa
YP_001252561.1	Similar to Clostridium acetobutylicum uncharacterized protein, ortholog of yrxa b.subtilis cac0009 SWALL:Q97N29 (EMBL:AE007514) (171 aa) fasta scores: E(): 1.1e-34, 57.31 38d in 171 aa, and to Clostridium tetani transcriptional regulator ctc00087 SWALL:Q899T1 (EMBL:AE015936) (170 aa) fasta scores: E(): 1.4e-30, 53.25 38d in 169 aa
YP_001252562.1	Similar to Methanobacterium thermoautotrophicum hypothetical protein Mth772 SWALL:O26866 (EMBL:AE000856) (375 aa) fasta scores: E(): 2.1e-24, 31.88 38d in 345 aa,and to Methanosarcina mazei iron-sulfur cluster-binding protein mm0611 SWALL:Q8PZ83 (EMBL:AE013286) (376 aa) fasta scores: E(): 7.6e-22, 31.37 38d in 357 aa
YP_001252563.1	Similar to Clostridium tetani membrane protein ctc00086 SWALL:Q899T2 (EMBL:AE015936) (887 aa) fasta scores: E(): 2.6e-191, 56.71 38d in 894 aa, and to Clostridium acetobutylicum hypothetical protein Cac0010 SWALL:Y010_CLOAB (SWALL:Q97N28) (906 aa) fasta scores: E(): 6.1e-198, 56.57 38d in 905 aa
YP_001252564.1	Similar to Clostridium acetobutylicum uncharacterized of erfk family cac0011 SWALL:Q97N27 (EMBL:AE007514) (286 aa) fasta scores: E(): 2.6e-20, 34.52 38d in 281 aa
YP_001252565.1	Similar to Clostridium acetobutylicum predicted dehydrogenase with iron-sulfur domain cac0012 SWALL:Q97N26 (EMBL:AE007514) (467 aa) fasta scores: E(): 1.2e-65,44.63 38d in 475 aa, and to Clostridium tetani dehydrogenase, fad-dependent ctc00083 SWALL:Q899T4 (EMBL:AE015936) (475 aa) fasta scores: E(): 2.7e-91,55.48 38d in 465 aa
YP_001252566.1	Similar to Clostridium tetani protein ctc00082 SWALL:Q899T5 (EMBL:AE015936) (133 aa) fasta scores: E(): 1.6e-25, 59.01 38d in 122 aa, and to Clostridium acetobutylicum uncharacterized small protein, ortholog of t.maritima cac0013 SWALL:Q97N25 (EMBL:AE007514) (76 aa) fasta scores: E(): 3.4e-16, 76.38 id in 72 aa
YP_001252567.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001252569.1	Similar to Bacillus halodurans ABC transporter bh0179 SWALL:Q9KGC5 (EMBL:AP001507) (220 aa) fasta scores: E(): 1.6e-29, 42.13 38d in 216 aa, and to Streptococcus pneumoniae ABC transporter ATP-binding protein sp0707 SWALL:Q97RT3 (EMBL:AE007379) (215 aa) fasta scores: E(): 3.2e-28, 45.14 38d in 206 aa
YP_001252570.1	Similar to Staphylococcus epidermidis membrane spanning protein se0213 SWALL:Q8CQC3 (EMBL:AE016744) (257 aa) fasta scores: E(): 0.022, 24.1 38d in 224 aa, and to Bacillus cereus bacitracin transport permease bcrb bc5399 SWALL:Q814M8 (EMBL:AE017015) (330 aa) fasta scores: E(): 0.17, 21.07 38d in 261 aa
YP_001252571.1	Similar to Clostridium tetani membrane-spanning permease ctp35 SWALL:Q899X9 (EMBL:AF528097) (269 aa) fasta scores: E(): 0.0012, 24.26 id in 272 aa, and to Bacillus subtilis hypothetical protein yybm yybm or bsu40590 SWALL:YYBM_BACSU (SWALL:P37491) (251 aa) fasta scores: E(): 0.0018, 23.95 id in 263 aa
YP_001252572.1	Similar to Clostridium tetani membrane-spanning permease ctp34 SWALL:Q899Y0 (EMBL:AF528097) (271 aa) fasta scores: E(): 5.6e-08,25.67 38d in 261 aa, and to Bacillus subtilis hypothetical protein yybm yybm or bsu40590 SWALL:YYBM_BACSU (SWALL:P37491) (251 aa) fasta scores: E(): 0.0006, 23.93 id in 259 aa
YP_001252573.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_001252574.1	Similar to Clostridium pasteurianum hypothetical protein in hydrogenase 1 5'region SWALL:YHG1_CLOPA (SWALL:Q46189) (530 aa) fasta scores: E(): 5.7e-112,59.81 38d in 530 aa, and to Clostridium acetobutylicum ABC1 family protein kinase cac0033 SWALL:Q97N06 (EMBL:AE007516) (532 aa) fasta scores: E(): 1.5e-109,57.84 38d in 529 aa
YP_001252575.1	Similar to Clostridium acetobutylicum hypothetical protein Cac0034 SWALL:Q97N05 (EMBL:AE007517) (101 aa) fasta scores: E(): 3.8e-11, 48.51 38d in 101 aa, and to Clostridium perfringens hypothetical protein Cpe2529 SWALL:Q8XHF6 (EMBL:AP003194) (112 aa) fasta scores: E(): 4.4e-08, 42.85 38d in 112 aa
YP_001252576.1	Similar to Clostridium beijerinckii signal-transduction and transcriptional-control protein Stc SWALL:STC_CLOBE (SWALL:P26047) (632 aa) fasta scores: E(): 6.9e-53, 40.21 38d in 460 aa, and to Clostridium tetani transcriptional regulator ctc02531 SWALL:Q890V4 (EMBL:AE015944) (519 aa) fasta scores: E(): 9.9e-83,50.58 38d in 514 aa
YP_001252577.1	catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine
YP_001252578.1	Similar to Clostridium acetobutylicum cytosine deaminase cac0123 SWALL:Q97MR8 (EMBL:AE007525) (147 aa) fasta scores: E(): 1.8e-35, 63.88 38d in 144 aa, and to Clostridium tetani cytosine deaminase ctc00078 SWALL:Q899T9 (EMBL:AE015936) (146 aa) fasta scores: E(): 3.3e-35, 60.56 38d in 142 aa
YP_001252579.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_001252580.1	Similar to Clostridium tetani transcriptional regulatory protein ctc00074 SWALL:Q899U2 (EMBL:AE015936) (113 aa) fasta scores: E(): 3.4e-29, 76.99 38d in 113 aa,and to Clostridium acetobutylicum hypothetical upf0133 protein Cac0126 SWALL:Y126_CLOAB (SWALL:Q97MR5) (112 aa) fasta scores: E(): 6.8e-27, 72.32 38d in 112 aa
YP_001252581.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_001252582.1	Similar to Thermoanaerobacter tengcongensis hypothetical protein Tte0043 SWALL:Q8RDI2 (EMBL:AE012979) (90 aa) fasta scores: E(): 2e-05, 42.02 38d in 69 aa, and to Clostridium perfringens hypothetical protein Cpe0048 SWALL:Q8XPB7 (EMBL:AP003185) (92 aa) fasta scores: E(): 2.8e-05, 37.8 38d in 82 aa
YP_001252583.1	Similar to Bacillus subtilis sigma-K factor processing regulatory protein BofA or bsu00230 SWALL:BOFA_BACSU (SWALL:P24282) (87 aa) fasta scores: E(): 0.0036, 32.92 38d in 82 aa, and to Clostridium acetobutylicum BofA b.subtilis ortholog, sigmak-factor processing regulatory protein cac0129 SWALL:Q97MR2 (EMBL:AE007525) (90 aa) fasta scores: E(): 2.3e-14, 54.76 id in 84 aa
YP_001252584.1	Regulatory factor involved in maltose metabolism
YP_001252585.1	Similar to Clostridium tetani predicted NADH pyrophosphatase ctc00069 SWALL:Q899U7 (EMBL:AE015936) (175 aa) fasta scores: E(): 5.5e-45, 70 38d in 160 aa, and to Clostridium acetobutylicum N-terminal Zn-ribbon domain and C-terminal MutT domain, yjad ortholog cac0145 SWALL:Q97MP7 (EMBL:AE007526) (174 aa) fasta scores: E(): 4.7e-34,54.37 38d in 160 aa
YP_001252586.1	Similar to Clostridium acetobutylicum predicted enzyme with TIM-barrel fold cac0148 SWALL:Q97MP4 (EMBL:AE007526) (228 aa) fasta scores: E(): 1.9e-61,73.79 38d in 229 aa, and to Thermoanaerobacter tengcongensis hypothetical protein Tte2521 SWALL:Q8R798 (EMBL:AE013193) (227 aa) fasta scores: E(): 7.2e-52, 69.3 id in 215 aa
YP_001252587.1	Similar to Clostridium tetani polyferredoxin ctc00067 SWALL:Q899U9 (EMBL:AE015936) (258 aa) fasta scores: E(): 2.3e-44, 50.95 38d in 263 aa, and to Clostridium acetobutylicum polyferredoxin cac2657 SWALL:Q97FS0 (EMBL:AE007763) (249 aa) fasta scores: E(): 4.7e-20, 35.65 38d in 258 aa
YP_001252588.1	Similar to Clostridium tetani dinucleotide-utilizing enzyme ctc00868 SWALL:Q896X5 (EMBL:AE015939) (246 aa) fasta scores: E(): 1.3e-49,58.75 38d in 240 aa, and to Clostridium acetobutylicum dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis family 1 cac0908 SWALL:Q97KK9 (EMBL:AE007606) (251 aa) fasta scores: E(): 6.3e-46,58.87 38d in 248 aa
YP_001252589.1	Similar to Clostridium perfringens hypothetical protein Cpe0058 SWALL:Q8XPA7 (EMBL:AP003185) (388 aa) fasta scores: E(): 1.7e-59, 40.9 38d in 374 aa, and to Caulobacter crescentus transporter cc1133 SWALL:Q9A961 (EMBL:AE005791) (411 aa) fasta scores: E(): 4.9e-14, 23.01 38d in 352 aa
YP_001252590.1	Similar to Clostridium acetobutylicum ribosomal-protein-alanine acetyltransferase cac0152 SWALL:Q97MP0 (EMBL:AE007527) (312 aa) fasta scores: E(): 4.1e-60, 49.2 38d in 315 aa, and to Clostridium perfringens probable ribosomal-protein cpe0059 SWALL:Q8XPA6 (EMBL:AP003185) (312 aa) fasta scores: E(): 1.9e-53, 45.77 38d in 308 aa, and to Escherichia coli,Escherichia coli O157:H7, and Shigella flexneri ribosomal-protein-alanine acetyltransferase RimJ or b1066 or z1703 or ecs1444 or sf1072 or s1150 SWALL:RIMJ_ECOLI (SWALL:P09454) (194 aa) fasta scores: E(): 3.4e-14, 39.39 id in 165 aa
YP_001252591.1	Similar to Clostridium acetobutylicum uracyl DNA glycosilase cac0219 SWALL:Q97MH9 (EMBL:AE007535) (199 aa) fasta scores: E(): 5.7e-53, 67 38d in 197 aa, and to Clostridium tetani DNA polymerase, bacteriophage-type ctc00062 SWALL:Q899V2 (EMBL:AE015936) (173 aa) fasta scores: E(): 8.9e-41, 64.88 38d in 168 aa
YP_001252592.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001252593.1	Similar to Clostridium tetani protein ctc01787 SWALL:Q893M8 (EMBL:AE015942) (477 aa) fasta scores: E(): 5.7e-98, 58.62 38d in 481 aa, and to Bacillus anthracis domain protein ba1754 SWALL:Q81SB1 (EMBL:AE017029) (366 aa) fasta scores: E(): 9.9e-18, 27.1 id in 380 aa
YP_001252596.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_001252597.1	Similar to Clostridium acetobutylicum MccF-like protein cac0293 SWALL:Q97MA5 (EMBL:AE007544) (306 aa) fasta scores: E(): 1.5e-62, 56.18 38d in 299 aa, and to Clostridium perfringens hypothetical protein Cpe2458 SWALL:Q8XHM5 (EMBL:AP003194) (302 aa) fasta scores: E(): 3.3e-38, 47.81 38d in 297 aa
YP_001252598.1	Similar to Clostridium perfringens probable transport protein cpe2457 SWALL:Q8XHM6 (EMBL:AP003194) (314 aa) fasta scores: E(): 1.1e-77, 69.1 38d in 314 aa,and to Clostridium acetobutylicum magnesium and cobalt transporter cac0294 SWALL:Q97MA4 (EMBL:AE007544) (315 aa) fasta scores: E(): 1.1e-77, 66.03 38d in 315 aa
YP_001252599.1	Similar to Clostridium tetani protein ctc00217 SWALL:Q899G2 (EMBL:AE015936) (166 aa) fasta scores: E(): 3.1e-22, 42.51 38d in 167 aa, and to Clostridium perfringens hypothetical protein Cpe2456 SWALL:Q8XHM7 (EMBL:AP003194) (165 aa) fasta scores: E(): 4.5e-18, 38.12 38d in 160 aa
YP_001252600.1	Similar to Staphylococcus aureus HmrA or mw2057 SWALL:Q8NVF8 (EMBL:AP004829) (394 aa) fasta scores: E(): 4.7e-30, 28.68 38d in 387 aa, and to Clostridium tetani amidohydrolase ctc00218 SWALL:Q899G1 (EMBL:AE015936) (392 aa) fasta scores: E(): 1.3e-71, 50.39 38d in 383 aa, and to Escherichia coli aminobenzoyl-glutamate utilization protein b abgb or b1337 SWALL:ABGB_ECOLI (SWALL:P76052) (481 aa) fasta scores: E(): 0.0002, 25.46 38d in 326 aa
YP_001252602.1	Similar to Bacillus subtilis lysine decarboxylase Cad or bsu14630 SWALL:DCLY_BACSU (SWALL:P21885) (490 aa) fasta scores: E(): 1.9e-43, 31.13 38d in 485 aa, and to Clostridium acetobutylicum lysine decarboxylase cac0297 SWALL:Q97MA1 (EMBL:AE007544) (481 aa) fasta scores: E(): 7.2e-94, 53.95 38d in 480 aa
YP_001252603.1	Similar to Clostridium tetani thymidylate kinase ctc00220 SWALL:Q899F9 (EMBL:AE015936) (228 aa) fasta scores: E(): 5.8e-52, 62.16 38d in 222 aa, and to Fusobacterium nucleatum subsp. vincentii ATCC 49256 thymidylate kinase fnv0225 SWALL:EAA23262 (EMBL:AABF01000172) (228 aa) fasta scores: E(): 9.6e-42,51.54 38d in 227 aa
YP_001252604.1	Similar to Clostridium acetobutylicum protein from nitrogen regulatory protein P-II cac0299 SWALL:Q97M99 (EMBL:AE007544) (109 aa) fasta scores: E(): 4.1e-29,76.14 38d in 109 aa, and to Clostridium perfringens hypothetical protein Cpe2450 SWALL:Q8XHN3 (EMBL:AP003194) (109 aa) fasta scores: E(): 7.9e-23, 60.55 38d in 109 aa
YP_001252605.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_001252606.1	Similar to Treponema pallidum Tpl protein or tp0046 SWALL:TPL_TREPA (SWALL:P45685) (233 aa) fasta scores: E(): 5.7e-21, 37.68 38d in 207 aa, and to Clostridium tetani Tpl protein ctc00222 SWALL:Q899F7 (EMBL:AE015936) (302 aa) fasta scores: E(): 6.2e-79, 72.36 38d in 304 aa
YP_001252607.1	Similar to Pseudomonas sp periplasmic mercuric ion binding protein MerP SWALL:Q936U4 (EMBL:Y18360) (92 aa) fasta scores: E(): 0.64, 36.95 38d in 46 aa, and to Clostridium acetobutylicum predicted metal-binding protein of ferredoxin fold cac0302 SWALL:Q97M96 (EMBL:AE007544) (67 aa) fasta scores: E(): 7.5e-09, 43.28 38d in 67 aa
YP_001252608.1	Similar to Clostridium pasteurianum ferredoxin SWALL:FER_CLOPA (SWALL:P00195) (55 aa) fasta scores: E(): 1.6e-18, 90.9 38d in 55 aa
YP_001252609.1	Similar to Clostridium acetobutylicum SAM-dependent methyltransferase cac0306 SWALL:Q97M92 (EMBL:AE007545) (244 aa) fasta scores: E(): 1e-56, 61.47 38d in 244 aa,and to Clostridium perfringens hypothetical protein Cpe0279 SWALL:Q8XNQ3 (EMBL:AP003186) (256 aa) fasta scores: E(): 1e-52, 57.61 38d in 243 aa
YP_001252610.1	Similar to Clostridium tetani corrin/porphyrin methyltransferase ctc00226 SWALL:Q899F5 (EMBL:AE015936) (281 aa) fasta scores: E(): 2.6e-62, 63.79 38d in 279 aa,and to Clostridium perfringens hypothetical protein Cpe0280 SWALL:Q8XNQ2 (EMBL:AP003186) (280 aa) fasta scores: E(): 9.9e-63, 64.02 38d in 278 aa
YP_001252611.1	Similar to Listeria monocytogenes p45 precursor spl or lmo2505 SWALL:Q9RE04 (EMBL:AJ250194) (401 aa) fasta scores: E(): 2.4e-15, 31.18 38d in 388 aa, and to Clostridium acetobutylicum cell wall-associated hydrolase cac0308 SWALL:Q97M90 (EMBL:AE007545) (392 aa) fasta scores: E(): 2.2e-27, 36.84 38d in 380 aa
YP_001252612.1	Similar to Bacillus subtilis transition state regulatory protein AbrB or CpsX or bsu00370 SWALL:ABRB_BACSU (SWALL:P08874) (96 aa) fasta scores: E(): 1.4e-12, 74.19 38d in 62 aa, and to Clostridium acetobutylicum transition state regulatory protein AbrB cac3647 SWALL:Q97D34 (EMBL:AE007860) (81 aa) fasta scores: E(): 1.2e-26, 90.12 38d in 81 aa
YP_001252613.1	Similar to Clostridium perfringens hypothetical protein Cpe0282 SWALL:Q8XNQ0 (EMBL:AP003186) (199 aa) fasta scores: E(): 9.2e-42, 63.59 38d in 195 aa, and to Clostridium acetobutylicum uncharacterized protein homolog ykrk b. subtilis cac0314 SWALL:Q97M84 (EMBL:AE007546) (197 aa) fasta scores: E(): 6.5e-41, 59.89 38d in 187 aa
YP_001252614.1	Similar to Enterococcus faecalis arginine deiminase ArcA or ef0104 SWALL:Q93K67 (EMBL:AJ312276) (408 aa) fasta scores: E(): 1.6e-80, 55.06 38d in 405 aa, and to Bacillus licheniformis arginine deiminase ArcA SWALL:ARCA_BACLI (SWALL:O86131) (413 aa) fasta scores: E(): 3.7e-77, 51.22 id in 408 aa; Also similar to CBO1587 (57.03 38d).
YP_001252615.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_001252617.1	Similar to Clostridium tetani polysaccharide deacetylase ctc00229 SWALL:Q899F2 (EMBL:AE015936) (293 aa) fasta scores: E(): 4.7e-50,52.05 38d in 292 aa, and to Clostridium acetobutylicum predicted xylanase/chitin deacetilase, similar to yxkh b.subtilis cac0436 SWALL:Q97LW8 (EMBL:AE007558) (295 aa) fasta scores: E(): 8.6e-38, 47.03 38d in 253 aa
YP_001252618.1	Similar to Clostridium acetobutylicum predicted metal-binding protein cac0438 SWALL:Q97LW6 (EMBL:AE007558) (80 aa) fasta scores: E(): 1.4e-16, 53.75 38d in 80 aa. No similarity to any other protein in the database.
YP_001252619.1	Similar to Bacillus subtilis spore maturation protein A SpmA or bsu23180 SWALL:SPMA_BACSU (SWALL:P35157) (196 aa) fasta scores: E(): 6.1e-26, 40.83 38d in 191 aa,and to Clostridium tetani spore maturation protein A ctc00238 SWALL:Q899E4 (EMBL:AE015936) (197 aa) fasta scores: E(): 3.7e-46, 61.78 38d in 191 aa
YP_001252620.1	Similar to Bacillus subtilis spore maturation protein B SpmB or bsu23170 SWALL:SPMB_BACSU (SWALL:P35158) (179 aa) fasta scores: E(): 4.1e-25, 41.61 38d in 173 aa,and to Clostridium acetobutylicum spore maturation protein B cac0470 SWALL:Q97LT4 (EMBL:AE007561) (173 aa) fasta scores: E(): 2.7e-45, 69.59 38d in 171 aa
YP_001252621.1	Similar to Vibrio parahaemolyticus multidrug resistance protein NorM or vp1479 SWALL:NORM_VIBPA (SWALL:O82855) (456 aa) fasta scores: E(): 8.1e-23, 26.57 id in 414 aa, and to Clostridium tetani Na+ driven multidrug efflux pump ctc01799 SWALL:Q893L8 (EMBL:AE015942) (455 aa) fasta scores: E(): 6.5e-93,52.71 38d in 442 aa
YP_001252622.1	Similar to Clostridium tetani DNA polymerase,bacteriophage-type ctc00242 SWALL:Q899E0 (EMBL:AE015936) (188 aa) fasta scores: E(): 1e-52, 63.97 38d in 186 aa,and to Thermoanaerobacter tengcongensis uracil-DNA glycosylase tte0077 SWALL:Q8RDF7 (EMBL:AE012981) (186 aa) fasta scores: E(): 4.2e-42, 56.21 38d in 185 aa
YP_001252623.1	Similar to Bacillus subtilis organic hydroperoxide resistance transcriptional regulator OhrR or bsu13150 SWALL:OHRR_BACSU (SWALL:O34777) (147 aa) fasta scores: E(): 0.00012, 27.27 38d in 143 aa, and to Staphylococcus aureus hypothetical protein sav2386 or sa2174 SWALL:Q99RP3 (EMBL:AP003365) (148 aa) fasta scores: E(): 1.4e-05,28.87 38d in 142 aa
YP_001252624.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_001252625.1	Similar to Clostridium perfringens hypothetical protein Cpe2521 SWALL:Q8XHG4 (EMBL:AP003194) (499 aa) fasta scores: E(): 1.5e-43, 34.32 38d in 507 aa, and to Listeria monocytogenes hypothetical protein Lmo2224 SWALL:Q8Y552 (EMBL:AL591982) (377 aa) fasta scores: E(): 1.6e-08, 23.49 38d in 498 aa
YP_001252626.1	Similar to Clostridium acetobutylicum php superfamily hydrolase, yabd ortholog cac2989 SWALL:Q97EW7 (EMBL:AE007795) (253 aa) fasta scores: E(): 1e-64, 68.65 id in 252 aa, and to Clostridium perfringens hypothetical protein Cpe2520 SWALL:Q8XHG5 (EMBL:AP003194) (256 aa) fasta scores: E(): 1e-61, 63.92 38d in 255 aa
YP_001252627.1	Similar to Clostridium tetani hypothetical membrane associated protein ctc00245 SWALL:Q899D7 (EMBL:AE015936) (368 aa) fasta scores: E(): 2.6e-61, 54.98 38d in 351 aa
YP_001252628.1	Similar to Clostridium acetobutylicum primase-like protein, containing toprim domain, yabf b.subtilis ortholog cac2987 SWALL:Q97EW9 (EMBL:AE007795) (185 aa) fasta scores: E(): 7.2e-43, 71.34 38d in 178 aa
YP_001252629.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_001252630.1	Similar to Clostridium tetani protein ctc00249 SWALL:Q899D4 (EMBL:AE015936) (438 aa) fasta scores: E(): 3.8e-27, 45.7 38d in 431 aa, and to Clostridium acetobutylicum hypothetical protein Cac2985 SWALL:Q97EX1 (EMBL:AE007795) (491 aa) fasta scores: E(): 5.8e-27, 40.65 38d in 487 aa
YP_001252631.1	Similar to Clostridium acetobutylicum hypothetical protein Cac2984 SWALL:Q97EX2 (EMBL:AE007795) (221 aa) fasta scores: E(): 6.8e-24, 36.92 38d in 195 aa, and to Clostridium tetani membrane-associated protein ctc00250 SWALL:Q899D3 (EMBL:AE015936) (196 aa) fasta scores: E(): 6.2e-19, 34.02 38d in 194 aa
YP_001252632.1	Similar to Clostridium tetani protein ctc00252 SWALL:Q899D1 (EMBL:AE015936) (279 aa) fasta scores: E(): 2e-49, 52.51 38d in 278 aa, and to Clostridium acetobutylicum hypothetical protein Cac2983 cac2983 SWALL:Q97EX3 (EMBL:AE007795) (284 aa) fasta scores: E(): 1.4e-40, 45.93 38d in 283 aa
YP_001252633.1	Similar to Thermoanaerobacter tengcongensis membrane-fusion protein acra2 or tte1200 SWALL:Q8RAL3 (EMBL:AE013082) (390 aa) fasta scores: E(): 1.4e-23,37.98 38d in 387 aa, and to Clostridium tetani membrane-associated protein ctc00484 SWALL:Q898G8 (EMBL:AE015937) (437 aa) fasta scores: E(): 9e-15, 25.87 id in 429 aa
YP_001252634.1	Similar to Clostridium tetani ABC transporter ATP-binding protein ctc00485 SWALL:Q898G7 (EMBL:AE015937) (238 aa) fasta scores: E(): 1.8e-49, 64.31 38d in 227 aa,and to Thermoanaerobacter tengcongensis ABC-type transport systems, involved in lipoprotein release, ATPase components phnl2 or tte1199 SWALL:Q8RAL4 (EMBL:AE013082) (231 aa) fasta scores: E(): 9e-49, 62.55 38d in 227 aa
YP_001252635.1	Similar to Clostridium tetani ABC transporter permease ctc00486 SWALL:Q898G6 (EMBL:AE015937) (404 aa) fasta scores: E(): 1e-60, 47.66 38d in 407 aa,and to Thermoanaerobacter tengcongensis ABC-type transport systems, involved in lipoprotein release, permease components tte1198 SWALL:Q8RAL5 (EMBL:AE013082) (405 aa) fasta scores: E(): 4.1e-65, 50.73 38d in 406 aa
YP_001252636.1	Similar to Escherichia coli, and Escherichia coli O6 Mrp protein or b2113 or c2641 SWALL:MRP_ECOLI (SWALL:P21590) (369 aa) fasta scores: E(): 6.7e-31, 42.33 id in 248 aa, and to Clostridium tetani Mrp protein ctc00253 SWALL:Q899D0 (EMBL:AE015936) (280 aa) fasta scores: E(): 8.9e-72, 73.4 38d in 282 aa
YP_001252637.1	Similar to Thermotoga maritima ferredoxin Fdx or tm0927 SWALL:FER_THEMA (SWALL:P46797) (60 aa) fasta scores: E(): 0.00016, 38.98 38d in 59 aa, and to Clostridium perfringens ferredoxin Fer or cpe2511 SWALL:Q8XHH3 (EMBL:AP003194) (62 aa) fasta scores: E(): 3.4e-07, 45.76 38d in 59 aa
YP_001252638.1	Similar to Borrelia turicatae repeat motif protein BdrA6- SWALL:Q9RGH2 (EMBL:AF128449) (62 aa) fasta scores: E(): 2.8, 36.36 38d in 55 aa, and to Plasmodium yoelii yoelii hypothetical protein py07231 SWALL:EAA19615 (EMBL:AABL01002604) (76 aa) fasta scores: E(): 2.7, 31.25 id in 48 aa
YP_001252640.1	Similar to Clostridium tetani signaling protein ctc01837 SWALL:Q893I5 (EMBL:AE015942) (449 aa) fasta scores: E(): 1.8e-10, 26.93 38d in 427 aa, and to Shewanella oneidensis cyclic nucleotide phosphodiesterase,so3556 SWALL:Q8EBG2 (EMBL:AE015792) (420 aa) fasta scores: E(): 3.6e-15, 24.37 38d in 357 aa
YP_001252641.1	Similar to Bacillus subtilis SapB protein or bsu06650 SWALL:SAPB_BACSU (SWALL:Q45514) (232 aa) fasta scores: E(): 7.7e-13, 28.15 38d in 206 aa, and to Clostridium perfringens probable Mg2+ transport protein cpe0592 SWALL:Q8XMU6 (EMBL:AP003187) (241 aa) fasta scores: E(): 1.2e-27, 39.24 38d in 237 aa
YP_001252642.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_001252643.1	Similar to Escherichia coli, and Escherichia coli O157:H7 anaerobic ribonucleoside-triphosphate reductase activating protein NrdG or b4237 or z5847 or ecs5214 SWALL:NRDG_ECOLI (SWALL:P39329) (154 aa) fasta scores: E(): 1.3e-09, 34.24 38d in 146 aa, and to Clostridium tetani anaerobic ribonucleoside-triphosphate reductase activating protein ctc00258 SWALL:Q899C6 (EMBL:AE015936) (169 aa) fasta scores: E(): 2.1e-34, 61.58 38d in 164 aa
YP_001252644.1	Similar to Clostridium acetobutylicum membrane protein cap0154 SWALL:Q97TF0 (EMBL:AE001438) (225 aa) fasta scores: E(): 3.1e-26, 39.64 38d in 222 aa, and to Bacillus cereus hypothetical protein bc4207 SWALL:Q818P2 (EMBL:AE017011) (226 aa) fasta scores: E(): 4.2e-06,24.31 38d in 218 aa
YP_001252645.1	Similar to Clostridium acetobutylicum predicted transcriptional regulator cap0153 SWALL:Q97TF1 (EMBL:AE001438) (115 aa) fasta scores: E(): 2.3e-29,73.45 38d in 113 aa, and to Clostridium tetani transcriptional regulator PadR or ctc00601 SWALL:Q897X0 (EMBL:AE015938) (106 aa) fasta scores: E(): 3.6e-20,52.88 38d in 104 aa
YP_001252646.1	Similar to Clostridium acetobutylicum Zn-dependent hydrolases of the metallo-beta-lactamase superfamily cac0482 SWALL:Q97LS2 (EMBL:AE007563) (211 aa) fasta scores: E(): 2e-35, 44.07 38d in 211 aa, and to Thermoanaerobacter tengcongensis predicted Zn-dependent hydrolases of the beta-lactamase fold tte2532 SWALL:Q8R787 (EMBL:AE013195) (212 aa) fasta scores: E(): 1.4e-31, 44.5 id in 200 aa
YP_001252647.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin)
YP_001252648.1	Similar to Clostridium saccharobutylicum hth-type transcriptional regulator RegA or RepA SWALL:REGA_CLOSA (SWALL:Q45831) (332 aa) fasta scores: E(): 1.2e-72, 65.75 id in 330 aa, and to Bacillus megaterium glucose-resistance amylase regulator CcpA SWALL:CCPA_BACME (SWALL:P46828) (332 aa) fasta scores: E(): 3.2e-45, 44.61 id in 334 aa
YP_001252649.1	Similar to Clostridium tetani DNA helicase ctc00264 SWALL:Q899C1 (EMBL:AE015936) (1352 aa) fasta scores: E(): 1e-180, 40.17 38d in 1359 aa, and to Clostridium acetobutylicum superfamily i DNA helicase cac3036 SWALL:Q97ES1 (EMBL:AE007800) (1351 aa) fasta scores: E(): 2.2e-177, 41.54 38d in 1343 aa
YP_001252650.1	Similar to Escherichia coli mannose-1-phosphate guanylyltransferase manc or rfbm or rfbm1 SWALL:RFM9_ECOLI (SWALL:P37753) (471 aa) fasta scores: E(): 5.4e-36, 36.51 id in 356 aa, and to Clostridium tetani mannose-6-phosphate isomerase ctc00265 SWALL:Q899C0 (EMBL:AE015936) (355 aa) fasta scores: E(): 5.9e-94,70.33 38d in 354 aa
YP_001252651.1	Similar to Clostridium acetobutylicum hypothetical upf0272 protein Cac0774 SWALL:Y774_CLOAB (SWALL:Q97KZ2) (420 aa) fasta scores: E(): 5e-86, 59.19 38d in 424 aa,and to Wolinella succinogenes hypothetical protein ws0139 SWALL:CAE09302 (EMBL:BX571657) (396 aa) fasta scores: E(): 4e-48, 44.26 38d in 427 aa
YP_001252652.1	Similar to Clostridium acetobutylicum ATP-utilizing enzyme of the pp-loop superfamily cac0775 SWALL:Q97KZ1 (EMBL:AE007592) (271 aa) fasta scores: E(): 9.6e-58,59.62 38d in 265 aa, and to Thermoanaerobacter tengcongensis ATP-utilizing enzymes of the pp-loop superfamily tte0769 SWALL:Q8RBP5 (EMBL:AE013044) (255 aa) fasta scores: E(): 7.3e-44, 54.09 38d in 244 aa
YP_001252653.1	Similar to Myxococcus xanthus phosphoribosyl amino imidizole carboxylase-like protein SWALL:Q8VQZ2 (EMBL:AF449411) (250 aa) fasta scores: E(): 2.7e-43,52.43 38d in 246 aa, and to Clostridium acetobutylicum ncair mutase cac0776 SWALL:Q97KZ0 (EMBL:AE007592) (248 aa) fasta scores: E(): 4.2e-63, 71.37 38d in 248 aa
YP_001252654.1	Similar to Clostridium tetani Fe-s oxidoreductase ctc00266 SWALL:Q899B9 (EMBL:AE015936) (460 aa) fasta scores: E(): 2.1e-137, 71.08 38d in 460 aa, and to Clostridium acetobutylicum moaa/nirj family fe-s oxidoreductase cac2791 SWALL:Q97FE9 (EMBL:AE007776) (461 aa) fasta scores: E(): 2.8e-119, 61.6 38d in 461 aa
YP_001252655.1	Similar to Agrobacterium radiobacter lactose-binding protein precursor LacE SWALL:LACE_AGRRD (SWALL:P29822) (422 aa) fasta scores: E(): 1.9e-12, 21.24 id in 386 aa, and to Clostridium acetobutylicum sugar-binding periplasmic protein cac2912 SWALL:Q97F41 (EMBL:AE007788) (432 aa) fasta scores: E(): 4.3e-18,22.63 38d in 433 aa
YP_001252656.1	Similar to Escherichia coli mannosyltransferase B MtfB SWALL:Q47594 (EMBL:D43637) (381 aa) fasta scores: E(): 2.5e-24, 30.58 38d in 291 aa, and to Clostridium tetani mannosyltransferase ctc00268 SWALL:Q899B7 (EMBL:AE015936) (374 aa) fasta scores: E(): 2.1e-77,55.94 38d in 370 aa; Also similar to the nearby CDS, CBO0113, (44.892 ide. in 372 aa overlap)
YP_001252657.1	Similar to Bacillus subtilis spore coat protein S CotS or bsu30900 SWALL:COTS_BACSU (SWALL:P46914) (351 aa) fasta scores: E(): 4.6e-06, 19.63 38d in 331 aa, and to Clostridium acetobutylicum spore coat protein CotS related cac2910 SWALL:Q97F43 (EMBL:AE007788) (335 aa) fasta scores: E(): 3.8e-69, 52.25 38d in 333 aa
YP_001252659.1	Similar to Clostridium tetani spore coat protein ctc00270 SWALL:Q899B5 (EMBL:AE015936) (256 aa) fasta scores: E(): 1.2e-19, 35.84 38d in 226 aa, and to Clostridium acetobutylicum spore coat protein CotS related cac2909 SWALL:Q97F44 (EMBL:AE007788) (251 aa) fasta scores: E(): 1.5e-18, 31.78 38d in 258 aa
YP_001252660.1	Similar to Bacillus subtilis spore coat protein S CotS or bsu30900 SWALL:COTS_BACSU (SWALL:P46914) (351 aa) fasta scores: E(): 5.4e-11, 25.43 38d in 342 aa, and to Clostridium acetobutylicum spore coat protein CotS related cac2908 SWALL:Q97F45 (EMBL:AE007788) (344 aa) fasta scores: E(): 6.1e-61, 49.84 38d in 331 aa. Also similar to CBO0114 (32.390 38d), CBO0109 (32.537) and to CBO0111 (21.756).
YP_001252661.1	Similar to Escherichia coli mannosyltransferase B MtfB SWALL:Q47594 (EMBL:D43637) (381 aa) fasta scores: E(): 8.8e-32, 32.55 38d in 384 aa, and to Clostridium tetani mannosyltransferase ctc00272 SWALL:Q899B3 (EMBL:AE015936) (384 aa) fasta scores: E(): 1.5e-84,60.85 38d in 373 aa; Also similar to the nearby CDS, CBO0108, (44.892 ide. in 372 aa overlap)
YP_001252662.1	Similar to Bacillus subtilis YtaA protein SWALL:O34656 (EMBL:Z99119) (357 aa) fasta scores: E(): 1.3e-20, 28.1 38d in 306 aa, and to Clostridium tetani spore coat protein ctc00273 SWALL:Q899B2 (EMBL:AE015936) (337 aa) fasta scores: E(): 8.4e-95, 71.85 38d in 334 aa. Also similar to CBO0112 (32.390 38d), CBO0109 (31.077).
YP_001252663.1	Similar to Clostridium tetani protein ctc00279 SWALL:Q899A6 (EMBL:AE015936) (300 aa) fasta scores: E(): 3.5e-69, 65.21 38d in 299 aa, and to Clostridium acetobutylicum uncharacterized protein, yabg b.subtilis ortholog cac2905 SWALL:Q97F48 (EMBL:AE007788) (300 aa) fasta scores: E(): 8.1e-69, 61.79 38d in 301 aa
YP_001252664.1	Similar to Bacillus subtilis Veg protein or bsu00440 SWALL:VEG_BACSU (SWALL:P37466) (86 aa) fasta scores: E(): 5.9e-12, 52.77 38d in 72 aa, and to Clostridium acetobutylicum uncharacterized protein, Veg b.subtilis ortholog cac2904 SWALL:Q97F49 (EMBL:AE007788) (78 aa) fasta scores: E(): 3.2e-18, 69.73 38d in 76 aa
YP_001252665.1	Similar to Clostridium tetani protein ctc00280 SWALL:Q899A5 (EMBL:AE015936) (520 aa) fasta scores: E(): 8e-105, 53.07 38d in 520 aa, and to Clostridium acetobutylicum lysm domain containing membrane protein cac2903 SWALL:Q97F50 (EMBL:AE007787) (520 aa) fasta scores: E(): 1.9e-86, 45.76 38d in 520 aa
YP_001252666.1	Similar to Synechococcus elongatus cyanophycinase CphB or tlr2169 SWALL:CPHB_SYNEL (SWALL:Q9F2I8) (322 aa) fasta scores: E(): 3.5e-32, 38.28 38d in 256 aa, and to Clostridium tetani cyanophycinase ctc00281 SWALL:Q899A4 (EMBL:AE015936) (268 aa) fasta scores: E(): 8e-68, 69.58 id in 263 aa
YP_001252667.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_001252668.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_001252669.1	Similar to Thermoanaerobacter tengcongensis hypothetical protein Tte2556 tte2556 SWALL:Q8R768 (EMBL:AE013196) (80 aa) fasta scores: E(): 1.3, 32.75 38d in 58 aa
YP_001252670.1	Similar to Bacillus cereus spore germination protein GerlA SWALL:Q93N70 (EMBL:AF387344) (492 aa) fasta scores: E(): 7.4e-71, 40.43 38d in 502 aa, and to Clostridium tetani spore germination protein b1 ctc00285 SWALL:Q899A1 (EMBL:AE015936) (492 aa) fasta scores: E(): 3.1e-111, 64.34 38d in 502 aa
YP_001252671.1	Similar to Bacillus subtilis spore germination protein A2 GerAb or GerA2 or bsu33060 SWALL:GRAB_BACSU (SWALL:P07869) (365 aa) fasta scores: E(): 4.9e-24, 27.92 id in 351 aa, and to Clostridium tetani spore germination protein A2 ctc00286 SWALL:Q899A0 (EMBL:AE015936) (369 aa) fasta scores: E(): 1.3e-72, 50.13 38d in 363 aa
YP_001252672.1	Similar to Bacillus cereus spore germination protein GerlC SWALL:Q93N68 (EMBL:AF387344) (390 aa) fasta scores: E(): 1.8e-14, 27.36 38d in 402 aa, and to Clostridium tetani spore germination protein A3 ctc00287 SWALL:Q898Z9 (EMBL:AE015936) (394 aa) fasta scores: E(): 1.6e-56, 37.72 38d in 395 aa
YP_001252673.1	Similar to Bacillus subtilis stage II sporulation protein R SpoIIR or Ipc-27d or bsu36970 SWALL:SP2R_BACSU (SWALL:P39151) (224 aa) fasta scores: E(): 1.9e-18, 35.71 id in 224 aa, and to Clostridium perfringens stage II sporulation protein R SpoIIR or cpe2211 SWALL:Q8XIB0 (EMBL:AP003193) (209 aa) fasta scores: E(): 1.5e-37,55.34 38d in 206 aa
YP_001252674.1	Similar to Clostridium tetani 1,2-diacylglycerol 3-glucosyltransferase ctc00289 SWALL:Q898Z7 (EMBL:AE015936) (389 aa) fasta scores: E(): 1.7e-81,59.38 38d in 389 aa, and to Clostridium acetobutylicum predicted udp-glucuronosyltransferase, ypfp b/subtilis ortholog cac2897 SWALL:Q97F56 (EMBL:AE007787) (384 aa) fasta scores: E(): 4.3e-80, 59.53 38d in 383 aa
YP_001252675.1	Similar to Bacillus subtilis sporulation protein YpeB or JoeB or bsu22920 SWALL:YPEB_BACSU (SWALL:P38490) (450 aa) fasta scores: E(): 1e-27, 26.57 38d in 444 aa,and to Clostridium tetani membrane-associated protein ctc00290 SWALL:Q898Z6 (EMBL:AE015936) (455 aa) fasta scores: E(): 2.7e-92, 57.54 38d in 457 aa
YP_001252676.1	Similar to Clostridium tetani protein ctc00292 SWALL:Q898Z4 (EMBL:AE015936) (326 aa) fasta scores: E(): 7.2e-89, 71.77 38d in 326 aa, and to Clostridium perfringens hypothetical protein Cpe2210 cpe2210 SWALL:Q8XIB1 (EMBL:AP003193) (326 aa) fasta scores: E(): 1.1e-78, 67.79 38d in 326 aa
YP_001252677.1	Similar to Clostridium tetani protein ctc00293 SWALL:Q898Z3 (EMBL:AE015936) (143 aa) fasta scores: E(): 1.5e-24, 54.22 38d in 142 aa, and to Clostridium acetobutylicum uncharacterized protein, ywib b.subtilis homolog cac2894 SWALL:Q97F59 (EMBL:AE007787) (137 aa) fasta scores: E(): 1.7e-20, 52.55 38d in 137 aa
YP_001252678.1	Similar to Clostridium tetani hypothetical protein ctc00294 SWALL:Q898Z2 (EMBL:AE015936) (113 aa) fasta scores: E(): 3.3e-15, 49 38d in 100 aa, and to Clostridium acetobutylicum hypothetical protein Cac2893 SWALL:Q97F60 (EMBL:AE007787) (95 aa) fasta scores: E(): 1.9e-09, 36.66 id in 90 aa
YP_001252679.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_001252680.1	Similar to Clostridium tetani hypothetical protein ctc00295 SWALL:Q898Z1 (EMBL:AE015936) (120 aa) fasta scores: E(): 3.3e-08, 32.45 38d in 114 aa
YP_001252681.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_001252682.1	Similar to Escherichia coli, and Escherichia coli O157:H7 50S ribosomal protein L31 RpmE or b3936 or z5484 or ecs4863 SWALL:RL31_ECOLI (SWALL:P02432) (70 aa) fasta scores: E(): 6.4e-12, 50.74 38d in 67 aa, and to Clostridium perfringens 50S ribosomal protein L31 RpmE or cpe2205 SWALL:RL31_CLOPE (SWALL:Q8XIB6) (68 aa) fasta scores: E(): 5.7e-23, 85.07 38d in 67 aa
YP_001252683.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_001252684.1	Similar to Clostridium acetobutylicum uncharacterized protein, predicted metal-dependent enzyme, yqhq b.subtilis ortholog cac2886 SWALL:Q97F66 (EMBL:AE007786) (317 aa) fasta scores: E(): 6.8e-73, 60.39 38d in 308 aa, and to Clostridium tetani protein ctc00300 SWALL:Q898Y7 (EMBL:AE015936) (249 aa) fasta scores: E(): 2.2e-65, 67.33 38d in 248 aa
YP_001252685.1	Similar to Escherichia coli, and Shigella flexneri protein methyltransferase HemK or b1212 or sf1215 or s1299 SWALL:HEMK_ECOLI (SWALL:P37186) (277 aa) fasta scores: E(): 2.3e-16, 30.88 38d in 259 aa, and to Clostridium tetani methyltransferase ctc00301 SWALL:Q898Y6 (EMBL:AE015936) (292 aa) fasta scores: E(): 1.1e-58,58.69 38d in 276 aa
YP_001252686.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_001252687.1	Similar to Clostridium tetani hypothetical membrane protein ctc00303 SWALL:Q898Y4 (EMBL:AE015936) (200 aa) fasta scores: E(): 1.4e-28, 46.19 38d in 197 aa, and to Clostridium acetobutylicum predicted membrane protein cac2883 SWALL:Q97F69 (EMBL:AE007785) (192 aa) fasta scores: E(): 1.2e-26, 40.1 38d in 197 aa
YP_001252688.1	Similar to Escherichia coli, Escherichia coli O6,and Escherichia coli O157:H7 zinc transporter ZupTt or b3040 or c3789 or z4397 or ecs3928 SWALL:ZUPT_ECOLI (SWALL:P24198) (257 aa) fasta scores: E(): 3.9e-08, 27.53 id in 247 aa, and to Clostridium tetani zinc uptake transporter ctc00304 SWALL:Q898Y3 (EMBL:AE015936) (236 aa) fasta scores: E(): 8.5e-49, 53.81 38d in 236 aa
YP_001252689.1	Similar to Clostridium acetobutylicum predicted translation factor cac2882 SWALL:Q97F70 (EMBL:AE007785) (350 aa) fasta scores: E(): 3.6e-85, 68.57 38d in 350 aa,and to Clostridium tetani sua5 protein ctc00305 SWALL:Q898Y2 (EMBL:AE015936) (350 aa) fasta scores: E(): 5.9e-83, 66.28 38d in 350 aa
YP_001252690.1	Similar to Acinetobacter johnsonii low molecular weight protein-tyrosine-phosphatase Ptp SWALL:PTP_ACIJO (SWALL:O52787) (142 aa) fasta scores: E(): 4.2e-06, 33.59 id in 128 aa, and to Clostridium tetani phosphotyrosine protein phosphatase ctc00306 SWALL:Q898Y1 (EMBL:AE015936) (154 aa) fasta scores: E(): 1.9e-24, 54.05 38d in 148 aa
YP_001252691.1	catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity
YP_001252692.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_001252693.1	Similar to Clostridium tetani comE operon protein 2 ctc00309 SWALL:Q898X8 (EMBL:AE015936) (162 aa) fasta scores: E(): 6.7e-56, 81.48 38d in 162 aa, and to Clostridium acetobutylicum deoxycytidylate deaminase cac2876 SWALL:Q97F76 (EMBL:AE007785) (162 aa) fasta scores: E(): 1.9e-44, 67.28 38d in 162 aa
YP_001252694.1	Similar to Bacillus subtilis probable UDP-phosphate N-acetylglucosaminyl 1-phosphate transferase tago or bsu35530 SWALL:TAGO_BACSU (SWALL:O34753) (358 aa) fasta scores: E(): 7.2e-47, 41.32 id in 346 aa, and to Clostridium tetani UDP-phosphate alpha-N-acetylglucosaminyltransferase ctc00310 SWALL:Q898X7 (EMBL:AE015936) (353 aa) fasta scores: E(): 9e-86, 67.85 38d in 336 aa
YP_001252695.1	Similar to Bacillus subtilis udp-N-acetylglucosamine 2-epimerase MnaA or bsu35660 SWALL:MNAA_BACSU (SWALL:P39131) (380 aa) fasta scores: E(): 7.6e-76, 56.69 38d in 381 aa, and to Clostridium perfringens udp-N-acetylglucosamine 2-epimerase cpe2196 SWALL:Q8XIC5 (EMBL:AP003193) (384 aa) fasta scores: E(): 2.5e-107, 77.16 38d in 381 aa
YP_001252696.1	Similar to Anabaena sp. ATP synthase I AtpI or Atp1 or all0011 SWALL:ATPZ_ANASP (SWALL:P12403) (122 aa) fasta scores: E(): 0.95, 21.42 38d in 112 aa, and to Clostridium pasteurianum ATP synthase subunit I AtpI SWALL:Q93Q51 (EMBL:AF283808) (123 aa) fasta scores: E(): 2.7e-07, 32.77 38d in 119 aa
YP_001252697.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_001252698.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_001252699.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel
YP_001252700.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_001252701.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_001252702.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_001252703.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_001252704.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex
YP_001252705.1	Similar to Clostridium acetobutylicum predicted membrane protein cac2863 SWALL:Q97F78 (EMBL:AE007784) (235 aa) fasta scores: E(): 2.2e-13, 31.09 38d in 238 aa
YP_001252706.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001252707.1	Similar to Bacillus subtilis stage ii sporulation protein D SpoIID or spoIIC or bsu36750 SWALL:SP2D_BACSU (SWALL:P07372) (343 aa) fasta scores: E(): 2.9e-17, 35.07 id in 345 aa, and to Clostridium tetani stage II sporulation protein D ctc00315 SWALL:Q898X2 (EMBL:AE015936) (376 aa) fasta scores: E(): 1.9e-56,48.17 38d in 357 aa
YP_001252708.1	Similar to Clostridium tetani membrane-associated protein ctc00316 SWALL:Q898X1 (EMBL:AE015936) (271 aa) fasta scores: E(): 1.1e-27, 51.6 id in 250 aa, and to Clostridium perfringens hypothetical protein Cpe2182 cpe2182 SWALL:Q8XID9 (EMBL:AP003193) (256 aa) fasta scores: E(): 1.5e-17, 32.94 38d in 255 aa
YP_001252709.1	Similar to Bacillus subtilis stage III sporulation protein D SpoIIID or bsu36420 SWALL:SP3D_BACSU (SWALL:P15281) (93 aa) fasta scores: E(): 1.1e-16, 62.65 id in 83 aa, and to Clostridium acetobutylicum stage iii sporulation protein D SpoIIID cac2859 SWALL:Q97F82 (EMBL:AE007783) (84 aa) fasta scores: E(): 9e-24, 89.28 id in 84 aa
YP_001252710.1	Similar to Escherichia coli, Escherichia coli O6,Salmonella typhimurium, Salmonella typhi, and Shigella flexneri rod shape-determining protein MreB SWALL:MREB_ECOLI (SWALL:P13519) (347 aa) fasta scores: E(): 4.4e-58, 51.67 38d in 329 aa, and to Clostridium tetani rod shape-determining protein MreB mreb or ctc00318 SWALL:Q898X0 (EMBL:AE015937) (343 aa) fasta scores: E(): 1.4e-89, 76.6 38d in 342 aa
YP_001252711.1	Similar to Clostridium acetobutylicum spore protease gpr related protein, yyac b.subtilis ortholog cac2857 SWALL:Q97F84 (EMBL:AE007783) (188 aa) fasta scores: E(): 4e-36, 59.06 38d in 171 aa
YP_001252712.1	Similar to Clostridium tetani ATPase of the pp-loop superfamily ctc00320 SWALL:Q898W8 (EMBL:AE015937) (236 aa) fasta scores: E(): 5.2e-62, 64.4 38d in 236 aa
YP_001252713.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_001252714.1	Similar to Clostridium tetani exodeoxyribonuclease v alpha chain ctc00322 SWALL:Q898W6 (EMBL:AE015937) (743 aa) fasta scores: E(): 1.3e-187, 68.18 38d in 745 aa
YP_001252715.1	Similar to Clostridium tetani protein ctc00323 SWALL:Q898W5 (EMBL:AE015937) (354 aa) fasta scores: E(): 9.6e-44, 38.26 38d in 345 aa
YP_001252716.1	Similar to Haemophilus influenzae competence protein F ComF or hi0434 SWALL:COMF_HAEIN (SWALL:P31773) (229 aa) fasta scores: E(): 4.7e-05, 25.83 38d in 209 aa,and to Clostridium acetobutylicum predicted amidophosphoribosyltransferase, ComC b.suntilis ortholog cac2852 SWALL:Q97F89 (EMBL:AE007783) (226 aa) fasta scores: E(): 6.3e-31, 46.63 38d in 208 aa
YP_001252717.1	Similar to Synechococcus sp. light repressed protein A LrtA SWALL:LRTA_SYNP2 (SWALL:P47908) (192 aa) fasta scores: E(): 4.8e-13, 35.97 38d in 189 aa, and to Clostridium tetani ssu ribosomal protein S30P ctc00325 SWALL:Q898W3 (EMBL:AE015937) (176 aa) fasta scores: E(): 1.5e-47, 75.56 38d in 176 aa
YP_001252718.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_001252719.1	catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA
YP_001252720.1	Similar to Bacillus licheniformis leucine aminopeptidase precursor SWALL:Q93EJ5 (EMBL:AF358651) (449 aa) fasta scores: E(): 9.2e-10, 26.85 38d in 417 aa, and to Clostridium acetobutylicum protein containing aminopeptidase domain cac2843 SWALL:Q97F97 (EMBL:AE007782) (449 aa) fasta scores: E(): 9.1e-79, 48.59 38d in 428 aa
YP_001252721.1	Similar to Clostridium tetani transcription accessory protein ctc00330 SWALL:Q898V8 (EMBL:AE015937) (718 aa) fasta scores: E(): 7.4e-199, 77.99 38d in 718 aa
YP_001252722.1	Similar to Clostridium tetani riboflavin transporter ctc00331 SWALL:Q898V7 (EMBL:AE015937) (204 aa) fasta scores: E(): 5.7e-43, 61.02 38d in 195 aa
YP_001252723.1	Similar to Clostridium tetani protein ctc00333 SWALL:Q898V6 (EMBL:AE015937) (511 aa) fasta scores: E(): 8.9e-30, 40.51 38d in 548 aa
YP_001252724.1	Similar to Bacillus subtilis YlqH protein ylqH SWALL:O34867 (EMBL:AJ000975) (93 aa) fasta scores: E(): 1.6e-07, 38.55 38d in 83 aa, and to Clostridium acetobutylicum flagellar biosynthesis related protein cac0639 SWALL:Q97LC3 (EMBL:AE007579) (90 aa) fasta scores: E(): 2.2e-17, 65 38d in 80 aa
YP_001252725.1	Similar to Clostridium perfringens hypothetical protein Cpe0653 cpe0653 SWALL:Q8XMN5 (EMBL:AP003187) (230 aa) fasta scores: E(): 3.1e-64, 67.54 38d in 228 aa
YP_001252726.1	Similar to Bacillus anthracis transcriptional repressor PagR or TcrA or Pxo1-109 SWALL:PAGR_BACAN (SWALL:O31178) (99 aa) fasta scores: E(): 8e-09, 41.37 38d in 87 aa, and to Bacillus cereus transcriptional regulator, ArsR family bc4256 SWALL:Q818J4 (EMBL:AE017011) (96 aa) fasta scores: E(): 4.6e-16, 63.09 38d in 84 aa
YP_001252727.1	Similar to Fusobacterium nucleatum coenzyme a disulfide reductase/ disulfide bond regulator domain fn1903 SWALL:Q8RHU1 (EMBL:AE010492) (810 aa) fasta scores: E(): 1e-163, 56.35 38d in 818 aa, and to Fusobacterium nucleatum subsp. vincentii ATCC 49256 coenzyme a disulfide reductase/ disulfide bond regulator domain fnv2089 SWALL:Q7P7P1 (EMBL:AABF01000012) (809 aa) fasta scores: E(): 2.7e-159, 55.5 38d in 818 aa
YP_001252728.1	Similar to Clostridium acetobutylicum uncharacterized protein cac0641 SWALL:Q97LC1 (EMBL:AE007579) (264 aa) fasta scores: E(): 2.5e-49,52.98 38d in 251 aa
YP_001252729.1	Similar to Clostridium tetani GTP pyrophosphokinase ctc00336 SWALL:Q898V3 (EMBL:AE015937) (262 aa) fasta scores: E(): 8.5e-70, 77.86 38d in 262 aa
YP_001252730.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_001252731.1	Similar to Nitrosomonas europaea transmembrane protein ne2212 SWALL:Q82SU2 (EMBL:BX321863) (140 aa) fasta scores: E(): 4.3e-05, 25.83 38d in 120 aa,and to Pseudomonas aeruginosa hypothetical protein Pa5130 pa5130 SWALL:Q9HU54 (EMBL:AE004926) (139 aa) fasta scores: E(): 7.6e-05, 29.16 38d in 120 aa
YP_001252732.1	Similar to Staphylococcus epidermidis cell shape determinant MreD se1331 SWALL:Q8CNZ6 (EMBL:AE016748) (173 aa) fasta scores: E(): 0.34, 22.36 38d in 161 aa, and to Clostridium tetani heptaprenyl diphosphate synthase component I ctc01025 SWALL:Q896H9 (EMBL:AE015939) (181 aa) fasta scores: E(): 0.13, 25.97 38d in 154 aa
YP_001252733.1	Similar to Clostridium acetobutylicum molecular chaperone, DNAJ family cac0648 SWALL:Q97LB4 (EMBL:AE007580) (195 aa) fasta scores: E(): 1.6e-36,55.15 38d in 194 aa
YP_001252734.1	Similar to Clostridium acetobutylicum uncharacterized protein, homolog of thermotoga maritima cac0649 SWALL:Q97LB3 (EMBL:AE007580) (283 aa) fasta scores: E(): 6.7e-52, 52.51 38d in 278 aa, and to Thermotoga maritima hypothetical protein Tm1805 tm1805 SWALL:Q9X2C5 (EMBL:AE001818) (272 aa) fasta scores: E(): 1.4e-10, 35.03 38d in 294 aa
YP_001252735.1	Similar to Clostridium acetobutylicum adenilate cyclase, class2 cac0650 SWALL:Q97LB2 (EMBL:AE007580) (180 aa) fasta scores: E(): 8.5e-37, 64.77 38d in 176 aa, and to Clostridium perfringens hypothetical protein Cpe1352 cpe1352 SWALL:Q8XKP2 (EMBL:AP003190) (187 aa) fasta scores: E(): 6.5e-36, 62.92 38d in 178 aa
YP_001252736.1	Similar to Clostridium tetani protein ctc00340 SWALL:Q898U9 (EMBL:AE015937) (366 aa) fasta scores: E(): 2e-83, 66.37 38d in 345 aa, and to Clostridium acetobutylicum hypothetical protein Cac0651 cac0651 SWALL:Q97LB1 (EMBL:AE007580) (345 aa) fasta scores: E(): 3.2e-82, 62.31 38d in 345 aa
YP_001252737.1	Similar to Entamoeba histolytica fructose-1,6-bisphosphate aldolase Ald SWALL:Q8MTW2 (EMBL:AY057996) (326 aa) fasta scores: E(): 5.8e-51, 49.2 id in 315 aa, and to Clostridium tetani fructose-bisphosphate aldolase ctc00341 SWALL:Q898U8 (EMBL:AE015937) (320 aa) fasta scores: E(): 3.3e-80,76.75 38d in 314 aa
YP_001252738.1	Similar to Clostridium perfringens hypothetical protein Cpe1349 SWALL:Q8XKP5 (EMBL:AP003190) (144 aa) fasta scores: E(): 8e-10, 37.77 38d in 90 aa, and to Clostridium acetobutylicum hypothetical protein Cac0670 SWALL:Q97L92 (EMBL:AE007582) (126 aa) fasta scores: E(): 2.1e-07, 31.57 38d in 95 aa
YP_001252739.1	Similar to Clostridium tetani protein ctc00342 SWALL:Q898U7 (EMBL:AE015937) (225 aa) fasta scores: E(): 3.4e-51, 63.06 38d in 222 aa, and to Clostridium acetobutylicum ortholog yrbg, yete, ykja,ydfs, ydfr b.subtilis cac0671 SWALL:Q97L91 (EMBL:AE007582) (224 aa) fasta scores: E(): 1e-47, 58.82 38d in 221 aa
YP_001252740.1	Similar to Clostridium tetani uridine kinase ctc00344 SWALL:Q898U6 (EMBL:AE015937) (552 aa) fasta scores: E(): 6.7e-122, 61.05 38d in 552 aa, and to Clostridium acetobutylicum fision threonyl-trna synthetase cac0672 SWALL:Q97L90 (EMBL:AE007582) (553 aa) fasta scores: E(): 4.3e-123, 61.84 38d in 553 aa
YP_001252742.1	Similar to Bacillus subtilis CDP-diacylglycerol--serine O-phosphatidyltransferase PssA or Pss or bsu02270 SWALL:PSS_BACSU (SWALL:P39823) (177 aa) fasta scores: E(): 5.7e-17, 39.15 38d in 166 aa, and to Clostridium tetani CDP-diacylglycerol--serine O-phosphatidyltransferase ctc00346 SWALL:Q898U4 (EMBL:AE015937) (175 aa) fasta scores: E(): 3.4e-45,70.17 38d in 171 aa
YP_001252743.1	Similar to Clostridium acetobutylicum CBS domains cac0678 SWALL:Q97L84 (EMBL:AE007583) (142 aa) fasta scores: E(): 4e-24, 54.81 38d in 135 aa, and to Clostridium tetani inosine-5-monophosphate dehydrogenase related protein ctc00347 SWALL:Q898U3 (EMBL:AE015937) (143 aa) fasta scores: E(): 4.3e-25, 57.97 38d in 138 aa
YP_001252744.1	similar to YegS from E. coli
YP_001252745.1	Similar to Clostridium acetobutylicum predicted membrane protein cac0680 SWALL:Q97L82 (EMBL:AE007583) (216 aa) fasta scores: E(): 2.9e-10, 27.06 38d in 218 aa
YP_001252746.1	Similar to Clostridium perfringens hypothetical protein Cpe1196 cpe1196 SWALL:Q8XL46 (EMBL:AP003189) (662 aa) fasta scores: E(): 5.7e-150, 59.93 38d in 644 aa, and to Thermotoga maritima hypothetical protein Tm0337 tm0337 SWALL:Q9WYH2 (EMBL:AE001714) (558 aa) fasta scores: E(): 1.4e-99, 48.82 38d in 553 aa
YP_001252747.1	Similar to Clostridium perfringens hypothetical protein Cpe1323 SWALL:Q8XKS1 (EMBL:AP003190) (423 aa) fasta scores: E(): 3.9e-69, 50.47 38d in 418 aa
YP_001252748.1	Similar to Bacillus cereus spore cortex-lytic enzyme precursor SleB or bc2753 SWALL:SLEB_BACCR (SWALL:P70874) (259 aa) fasta scores: E(): 1.6e-25, 42.85 id in 259 aa, and to Clostridium tetani spore-cortex-lytic enzyme precursor ctc00350 SWALL:Q898U1 (EMBL:AE015937) (255 aa) fasta scores: E(): 5e-62, 65.93 38d in 229 aa
YP_001252749.1	Also similar to CBO0205 (53.5 38d).
YP_001252750.1	Similar to Bacillus subtilis serine acetyltransferase CysE or CusA or bsu00930 SWALL:CYSE_BACSU (SWALL:Q06750) (217 aa) fasta scores: E(): 4.3e-35, 61.07 38d in 167 aa, and to Clostridium tetani serine acetyltransferase ctc00351 SWALL:Q898U0 (EMBL:AE015937) (186 aa) fasta scores: E(): 2.6e-47,74.45 38d in 184 aa
YP_001252751.1	Similar to Clostridium tetani iron-sulfur cluster-binding protein ctc00352 SWALL:Q898T9 (EMBL:AE015937) (327 aa) fasta scores: E(): 2.3e-75,61.12 38d in 319 aa
YP_001252752.1	Similar to Clostridium butyricum sn-glycerol-3-phosphate acyltransferase plsD SWALL:O32330 (EMBL:AF009362) (234 aa) fasta scores: E(): 9e-45, 56.65 id in 233 aa
YP_001252753.1	Similar to Paenibacillus polymyxa End3 ntH SWALL:Q9LCR1 (EMBL:AB003153) (224 aa) fasta scores: E(): 2e-35, 46.26 38d in 214 aa, and to Clostridium perfringens endonuclease III cpe1318 SWALL:Q8XKS6 (EMBL:AP003190) (209 aa) fasta scores: E(): 2.2e-47, 63.5 38d in 200 aa
YP_001252754.1	Similar to Bacillus stearothermophilus NAD-dependent malic enzyme SWALL:MAOX_BACST (SWALL:P16468) (478 aa) fasta scores: E(): 7e-79, 59.38 38d in 389 aa,and to Clostridium tetani NAD-dependent malic enzyme ctc00356 SWALL:Q898T6 (EMBL:AE015937) (389 aa) fasta scores: E(): 6.1e-102, 73.52 38d in 389 aa; Also similar to CBO0246 (66.6 38d)
YP_001252755.1	Similar to Bacillus subtilis cina-like protein CinA or bsu16930 SWALL:CINA_BACSU (SWALL:P46323) (416 aa) fasta scores: E(): 6.2e-57, 44.92 38d in 394 aa, and to Clostridium acetobutylicum competence-damage inducible protein, cina cac3586 SWALL:Q97D94 (EMBL:AE007855) (411 aa) fasta scores: E(): 1.3e-92, 60.29 38d in 408 aa
YP_001252756.1	Similar to Clostridium acetobutylicum predicted hydrolase from alpha/beta family, yqkd b.subtilis ortholog cac2725 SWALL:Q97FL1 (EMBL:AE007770) (330 aa) fasta scores: E(): 1.2e-61, 50.31 38d in 318 aa
YP_001252757.1	Similar to Lactococcus lactis glutamyl-aminopeptidase PepA SWALL:PEPA_LACLC (SWALL:Q48677) (355 aa) fasta scores: E(): 4.4e-08, 23.21 id in 336 aa, and to Clostridium acetobutylicum endoglucanase, aminopeptidase m42 family cac0690 SWALL:Q97L72 (EMBL:AE007584) (343 aa) fasta scores: E(): 2.2e-89, 65.78 38d in 342 aa
YP_001252758.1	Similar to Clostridium acetobutylicum uncharacterized protein, vanw of enterococcus faecalis related cac0691 SWALL:Q97L71 (EMBL:AE007584) (411 aa) fasta scores: E(): 4e-53, 44.75 38d in 362 aa, and to Clostridium tetani vancomycin b-type resistance protein vanw vanw or ctc00360 SWALL:Q898T2 (EMBL:AE015937) (467 aa) fasta scores: E(): 3.3e-61, 49.33 38d in 377 aa; Also similar to the downstream CDS, CBO0215 (48 id) and CBO0820 (45 38d)
YP_001252759.1	Similar to Clostridium acetobutylicum uncharacterized protein, vanw of enterococcus faecalis related cac0691 SWALL:Q97L71 (EMBL:AE007584) (411 aa) fasta scores: E(): 3.4e-55, 42.72 38d in 433 aa, and to Clostridium tetani vancomycin b-type resistance protein vanw vanw or ctc00360 SWALL:Q898T2 (EMBL:AE015937) (467 aa) fasta scores: E(): 7.3e-69, 45.59 38d in 454 aa; Also similar to the upstream CDS, CBO0214 (48 38d) and CBO0820 (47 38d)
YP_001252760.1	Similar to Bacillus subtilis spore photoproduct lyase SplB or Spl or bsu13930 SWALL:SPL_BACSU (SWALL:P37956) (342 aa) fasta scores: E(): 1.4e-52, 45.23 id in 336 aa, and to Clostridium acetobutylicum spore photoproduct lyase, SplB cac0699 SWALL:Q97L63 (EMBL:AE007585) (336 aa) fasta scores: E(): 4.5e-71,54.92 38d in 335 aa
YP_001252761.1	Similar to Bacillus subtilis CspR SWALL:Q45512 (EMBL:U58864) (157 aa) fasta scores: E(): 2.6e-31, 53.79 id in 158 aa, and to Clostridium acetobutylicum predicted tRNA-methylase cac0700 SWALL:Q97L62 (EMBL:AE007585) (160 aa) fasta scores: E(): 5.7e-53, 83.11 38d in 154 aa
YP_001252762.1	Similar to Clostridium tetani degv protein degv or ctc00368 SWALL:Q898S4 (EMBL:AE015937) (280 aa) fasta scores: E(): 1.1e-66, 65.71 38d in 280 aa, and to Clostridium acetobutylicum hypothetical upf0230 protein Cac0701 SWALL:Y701_CLOAB (SWALL:Q97L61) (279 aa) fasta scores: E(): 5.9e-59, 60.21 38d in 279 aa
YP_001252763.1	Similar to Listeria monocytogenes cd4+ T cell-stimulating antigen precursor tcsa or lmo1388 SWALL:TCSA_LISMO (SWALL:Q48754) (357 aa) fasta scores: E(): 1.4e-30, 41.09 38d in 365 aa, and to Clostridium tetani membrane lipoprotein TmpC precursor TmpC or ctc00369 SWALL:Q898S3 (EMBL:AE015937) (359 aa) fasta scores: E(): 2e-65, 56.09 38d in 369 aa
YP_001252764.1	Similar to Clostridium acetobutylicum sugar ABC-transporter ATP-ase component cac0703 SWALL:Q97L59 (EMBL:AE007585) (514 aa) fasta scores: E(): 1.5e-128,75.78 38d in 508 aa
YP_001252765.1	Similar to Clostridium acetobutylicum sugar ABC transporter permease cac0704 SWALL:Q97L58 (EMBL:AE007585) (365 aa) fasta scores: E(): 1.9e-88,64.94 38d in 368 aa
YP_001252766.1	Similar to Clostridium acetobutylicum sugar ABC transporter permease cac0705 SWALL:Q97L57 (EMBL:AE007585) (310 aa) fasta scores: E(): 5.9e-82,70.64 38d in 310 aa
YP_001252767.1	Similar to Bacillus subtilis probable polysaccharide deacetylase PdaA precursor PdaA or bsu07980 SWALL:PDAA_BACSU (SWALL:O34928) (263 aa) fasta scores: E(): 1.1e-13, 34.95 38d in 206 aa, and to Clostridium perfringens probable endo-1,4-beta-xylanase cpe1477 SWALL:Q8XKC3 (EMBL:AP003190) (238 aa) fasta scores: E(): 8.6e-33, 44.58 38d in 240 aa
YP_001252768.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_001252769.1	Similar to Bacillus megaterium central glycolytic genes regulator CggR SWALL:CGGR_BACME (SWALL:P35168) (342 aa) fasta scores: E(): 8.9e-45, 43.49 38d in 338 aa, and to Thermoanaerobacter tengcongensis transcriptional regulator, contains sigma factor-related N-terminal domain DeoR2 or tte1763 SWALL:Q8R963 (EMBL:AE013129) (340 aa) fasta scores: E(): 1e-59, 55.58 38d in 340 aa
YP_001252770.1	Similar to Bacillus megaterium glyceraldehyde 3-phosphate dehydrogenase Gap SWALL:G3P_BACME (SWALL:P23722) (334 aa) fasta scores: E(): 4.3e-78, 64.86 id in 333 aa, and to Bacillus stearothermophilus glyceraldehyde 3-phosphate dehydrogenase Gap SWALL:G3P_BACST (SWALL:P00362) (334 aa) fasta scores: E(): 4.1e-82, 69.06 38d in 333 aa; Also similar to CBO1095 (66.26 38d)
YP_001252771.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_001252772.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_001252773.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_001252774.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_001252775.1	Similar to Bacillus subtilis probable protein-export membrane protein SecG or bsu33630 SWALL:SECG_BACSU (SWALL:O32233) (76 aa) fasta scores: E(): 9.3e-10, 49.29 38d in 71 aa, and to Clostridium perfringens probable protein-export membrane protein SecG or cpe1297 SWALL:Q8XKU5 (EMBL:AP003190) (76 aa) fasta scores: E(): 4.7e-10, 44 38d in 75 aa
YP_001252776.1	Similar to Bacillus subtilis ribonuclease R Rnr or VacB or bsu33610 SWALL:RNR_BACSU (SWALL:O32231) (779 aa) fasta scores: E(): 1e-143, 54.55 38d in 702 aa, and to Clostridium acetobutylicum fusion ribonuclease and ribosomal protein S1 domain cac0715 SWALL:Q97L50 (EMBL:AE007586) (730 aa) fasta scores: E(): 2e-197, 72.08 id in 720 aa
YP_001252777.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_001252778.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_001252779.1	Similar to Clostridium perfringens probable glutamate/ aspartate transporter cpe0967 SWALL:Q8XLS4 (EMBL:AP003188) (387 aa) fasta scores: E(): 3.2e-120,84.23 38d in 387 aa
YP_001252780.1	Similar to Streptomyces sp. JP95 fad-binding oxidoreductase Grho1 grho1 SWALL:Q8KSY2 (EMBL:AF509565) (467 aa) fasta scores: E(): 2.5e-25,30.81 38d in 464 aa, and to Bacillus cereus FAD-dependent oxidase bc0412 SWALL:Q81IH6 (EMBL:AE016999) (444 aa) fasta scores: E(): 5.9e-95, 52.16 38d in 439 aa
YP_001252784.1	Similar to Catharanthus roseus aromatic-L-amino-acid decarboxylase tdC SWALL:DDC_CATRO (SWALL:P17770) (500 aa) fasta scores: E(): 9.8e-22, 22.05 id in 458 aa
YP_001252785.1	Similar to Bacillus halodurans flagellin Hag or bh3616 SWALL:FLA_BACHD (SWALL:Q05203) (272 aa) fasta scores: E(): 1e-39, 49.82 38d in 279 aa, and to Clostridium acetobutylicum flagellin FlaC or cac2203 SWALL:O69136 (EMBL:AF064086) (275 aa) fasta scores: E(): 3e-41, 50.17 38d in 279 aa
YP_001252786.1	Similar to Ascophyllum nodosum vanadium haloperoxidase SWALL:PRXV_ASCNO (SWALL:P81701) (557 aa) fasta scores: E(): 5.9e-25, 34.79 38d in 523 aa, and to Laminaria digitata vanadium-dependent bromoperoxidase 2 VbpO2 SWALL:CAD37192 (EMBL:AJ491787) (682 aa) fasta scores: E(): 6.3e-37, 36.1 38d in 518 aa
YP_001252787.1	Similar to Bacillus subtilis hypothetical protein yrkc or bsu26560 SWALL:YRKC_BACSU (SWALL:P54430) (186 aa) fasta scores: E(): 5.7e-41, 61.45 38d in 192 aa, and to Clostridium tetani protein ctc01899 SWALL:Q893C8 (EMBL:AE015942) (193 aa) fasta scores: E(): 1.1e-40,59.09 38d in 220 aa
YP_001252788.1	Similar to Clostridium acetobutylicum predicted membrane protein cac0739 SWALL:Q97L27 (EMBL:AE007589) (368 aa) fasta scores: E(): 1.8e-33, 41.42 38d in 379 aa
YP_001252789.1	Similar to Corynebacterium melassecola malic enzyme MalE SWALL:Q9KIF8 (EMBL:AF234535) (392 aa) fasta scores: E(): 3.3e-63, 52.91 38d in 378 aa, and to Escherichia coli NADP-dependent malic enzyme MaeB or b2463 SWALL:MAO2_ECOLI (SWALL:P76558) (759 aa) fasta scores: E(): 2.7e-57, 48.88 id in 403 aa; Also similar to CBO0210 (66.6 38d)
YP_001252790.1	transports degraded pectin products into the bacterial cell
YP_001252791.1	Similar to Escherichia coli, and Escherichia coli O157:H7 sensor protein DcuS or b4125 or z5727 or ecs5107 SWALL:DCUS_ECOLI (SWALL:P39272) (543 aa) fasta scores: E(): 1.4e-44, 31.09 38d in 537 aa, and to Clostridium tetani sensor kinase DpiB or ctc01524 SWALL:Q894L7 (EMBL:AE015941) (538 aa) fasta scores: E(): 4.2e-67,41.17 38d in 544 aa
YP_001252792.1	Similar to Bacillus subtilis probable c4-dicarboxylate response regulator dctr dctr or bsu04460 SWALL:DCTR_BACSU (SWALL:P96602) (226 aa) fasta scores: E(): 1e-26, 40 38d in 220 aa
YP_001252793.1	Similar to Bacillus subtilis amino-acid permease RocE or bsu40330 SWALL:ROCE_BACSU (SWALL:P39137) (467 aa) fasta scores: E(): 1.8e-73, 41.99 38d in 462 aa, and to Clostridium perfringens lysine specific permease cpe1166 SWALL:Q8XL76 (EMBL:AP003189) (489 aa) fasta scores: E(): 9.5e-137, 69.37 38d in 480 aa
YP_001252794.1	Similar to Serratia fonticola beta-lactamase SfhI SWALL:Q9RMI1 (EMBL:AF197943) (234 aa) fasta scores: E(): 0.086, 25.4 38d in 248 aa, and to Aeromonas veronii metallo-B-lactamase ImiS SWALL:O31272 (EMBL:Y10415) (255 aa) fasta scores: E(): 0.45, 22.26 38d in 247 aa
YP_001252795.1	Similar to Clostridium acetobutylicum predicted acetyltransferase cac2751 SWALL:Q97FI6 (EMBL:AE007773) (167 aa) fasta scores: E(): 8.9e-07, 25.44 38d in 169 aa
YP_001252796.1	Similar to Bacillus caldolyticus cytidine deaminase Cdd SWALL:Q9R2S1 (EMBL:AJ237979) (132 aa) fasta scores: E(): 1.2e-05, 30.4 38d in 125 aa, and to Aspergillus terreus blasticidin-S deaminase Bsd SWALL:BSD_ASPTE (SWALL:P78986) (130 aa) fasta scores: E(): 3.9e-05, 31.49 id in 127 aa
YP_001252797.1	Similar to Listeria innocua hypothetical protein Lin2361 SWALL:Q929B6 (EMBL:AL596172) (291 aa) fasta scores: E(): 3.5e-39, 37.75 38d in 294 aa, and to Bacillus halodurans hypothetical protein Bh3929 bh3929 SWALL:Q9K606 (EMBL:AP001520) (286 aa) fasta scores: E(): 1.7e-23,30.47 38d in 292 aa
YP_001252798.1	Similar to Thermotoga maritima dihydrofolate reductase FolA or DyrA or tm1641 SWALL:DYR_THEMA (SWALL:Q60034) (169 aa) fasta scores: E(): 0.00064, 24.56 id in 171 aa, and to Bacillus cereus pyrimidine reductase bc0650 SWALL:Q813Y8 (EMBL:AE017000) (173 aa) fasta scores: E(): 1.8e-16, 37.19 38d in 164 aa
YP_001252799.1	3'-5' exonuclease of DNA polymerase III
YP_001252800.1	Similar to Thermus thermophilus orf protein SWALL:Q9RA48 (EMBL:AB029373) (196 aa) fasta scores: E(): 0.00015, 34.54 38d in 165 aa, and to Clostridium acetobutylicum amidase related to nicotinamidase cac0779 SWALL:Q97KY7 (EMBL:AE007593) (211 aa) fasta scores: E(): 1.6e-42, 59.36 38d in 219 aa
YP_001252801.1	Similar to Escherichia coli xanthine dehydrogenase,molybdenum binding subunit XdhA or b2866 SWALL:XDHA_ECOLI (SWALL:Q46799) (752 aa) fasta scores: E(): 6e-37, 29.35 id in 780 aa, and to Bacillus halodurans hypothetical protein Bh1977 SWALL:Q9KBF1 (EMBL:AP001513) (1054 aa) fasta scores: E(): 1.7e-176, 59.58 38d in 767 aa
YP_001252802.1	Similar to Escherichia coli xanthine dehydrogenase,FAD binding subunit XdhB or b2867 SWALL:XDHB_ECOLI (SWALL:Q46800) (292 aa) fasta scores: E(): 0.00013, 22.06 id in 281 aa, and to Bacillus cereus xanthine dehydrogenase fad-binding subunit bc3167 SWALL:Q81BJ0 (EMBL:AE017008) (279 aa) fasta scores: E(): 6.2e-54,52.89 38d in 276 aa
YP_001252803.1	Similar to Escherichia coli xanthine dehydrogenase iron-sulfur binding subunit xdhc or b2868 SWALL:XDHC_ECOLI (SWALL:Q46801) (159 aa) fasta scores: E(): 1.2e-15, 39.61 id in 154 aa, and to Clostridium tetani carbon monoxide dehydrogenase, small subunit ctc02474 SWALL:Q891A6 (EMBL:AE015944) (158 aa) fasta scores: E(): 4.4e-39, 62.5 id in 152 aa
YP_001252804.1	Similar to Clostridium perfringens hypothetical protein Cpe1837 SWALL:Q8XJC3 (EMBL:AP003192) (146 aa) fasta scores: E(): 1.4, 29.66 38d in 118 aa
YP_001252805.1	Similar to Paracoccus pantotrophus cytochrome C biogenesis protein CcdA SWALL:Q9EYZ1 (EMBL:AF308446) (247 aa) fasta scores: E(): 3.3e-25, 37.44 38d in 211 aa, and to Bacillus subtilis cytochrome C-type biogenesis protein CcdA or bsu17930 SWALL:CCDA_BACSU (SWALL:P45706) (235 aa) fasta scores: E(): 1.8e-21, 32.03 38d in 231 aa
YP_001252806.1	Similar to Bacillus subtilis thiol-disulfide oxidoreductase ResA or bsu23150 SWALL:RESA_BACSU (SWALL:P35160) (179 aa) fasta scores: E(): 2.6e-11, 29.03 id in 186 aa
YP_001252807.1	Similar to Enterococcus faecium regulatory protein VanR SWALL:VANR_ENTFC (SWALL:Q06239) (231 aa) fasta scores: E(): 7.1e-27, 41.66 38d in 228 aa, and to Thermoanaerobacter tengcongensis response regulators consisting of a chey-like receiver domain and a hth DNA-binding domain ompr6 or tte2474 SWALL:Q8R7E1 (EMBL:AE013188) (231 aa) fasta scores: E(): 3.6e-39,51.32 38d in 226 aa
YP_001252808.1	Similar to Clostridium perfringens two-component sensor histidine kinase cpe2331 SWALL:Q8XHZ3 (EMBL:AP003193) (467 aa) fasta scores: E(): 1.2e-57,38.36 38d in 464 aa
YP_001252809.1	Similar to Clostridium perfringens probable reticuline oxidase cpe0406 SWALL:Q8XND2 (EMBL:AP003186) (448 aa) fasta scores: E(): 4.9e-57, 42.33 38d in 352 aa
YP_001252810.1	Similar to Klebsiella pneumoniae 6-phospho-alpha-glucosidase aglB SWALL:AGLB_KLEPN (SWALL:Q9AGA6) (440 aa) fasta scores: E(): 2.3e-79, 47.17 id in 443 aa
YP_001252811.1	Similar to Escherichia coli PTS system, maltose and glucose-specific IIabc component MalX or b1621 SWALL:PTOA_ECOLI (SWALL:P19642) (530 aa) fasta scores: E(): 6.6e-55, 40.03 38d in 522 aa
YP_001252812.1	Similar to Escherichia coli, and Escherichia coli O6 HTH-type transcriptional regulator RpiR or alsr or b4089 or c5095 SWALL:RPIR_ECOLI (SWALL:P39266) (296 aa) fasta scores: E(): 1.4e-06, 21.23 38d in 226 aa, and to Enterococcus faecalis ef0065 or ef0539 SWALL:Q8KU94 (EMBL:AF454824) (272 aa) fasta scores: E(): 3.6e-14,29.09 38d in 244 aa
YP_001252813.1	Similar to Bacillus subtilis hth-type transcriptional regulator GlvR or bsu08190 SWALL:GLVR_BACSU (SWALL:P54717) (254 aa) fasta scores: E(): 1.6e-08, 23.55 38d in 259 aa
YP_001252814.1	Similar to Salmonella typhimurium, and Salmonella typhi PTS system, glucose-specific IIa component Crr or stm2433 or sty2670 or t0424 SWALL:PTGA_SALTY (SWALL:P02908) (168 aa) fasta scores: E(): 1.4e-13, 40.58 id in 138 aa
YP_001252815.1	Similar to Clostridium tetani two-component response regulator ctc00392 SWALL:Q898Q1 (EMBL:AE015937) (231 aa) fasta scores: E(): 1.4e-78, 90.47 38d in 231 aa
YP_001252816.1	Similar to Clostridium tetani two-component sensor histidine kinase ctc00393 SWALL:Q898Q0 (EMBL:AE015937) (352 aa) fasta scores: E(): 9.2e-107, 85.22 38d in 352 aa
YP_001252817.1	Similar to Clostridium tetani ABC transporter ATP-binding protein ctc00394 SWALL:Q898P9 (EMBL:AE015937) (256 aa) fasta scores: E(): 1.2e-81, 95.31 38d in 256 aa
YP_001252818.1	Similar to Clostridium tetani ABC transporter permease ctc00396 SWALL:Q898P8 (EMBL:AE015937) (655 aa) fasta scores: E(): 5.2e-203, 90.24 38d in 656 aa
YP_001252819.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_001252820.1	Similar to Bacillus subtilis PTS system,arbutin-like IIbc component GlvC or GlvCB or Glv-2 or bsu08200 SWALL:PTIB_BACSU (SWALL:P54715) (527 aa) fasta scores: E(): 8.6e-61, 36.41 38d in 530 aa, and to Klebsiella pneumoniae PTS system, alpha-glucoside-specific IIbc component AglA SWALL:PTAB_KLEPN (SWALL:Q9AGA7) (540 aa) fasta scores: E(): 3.3e-59, 35.53 38d in 529 aa; Also highly similar to CBO0288 (53.2 38d)
YP_001252821.1	Similar to Bacillus subtilis maltose-6'-phosphate glucosidase GlvA or GlvG or Glv-1 or bsu08180 SWALL:GLVA_BACSU (SWALL:P54716) (449 aa) fasta scores: E(): 3.5e-140, 77.44 38d in 439 aa; Also similar to CBO0289 (73.69 38d) and CBO0267 (48.19 38d); Also highly similar to CBO0289 (73.69 38d)
YP_001252822.1	Similar to Bacillus subtilis PTS system,glucose-specific IIabc component PtsG or PtsX or Crr or bsu13890 SWALL:PTGA_BACSU (SWALL:P20166) (699 aa) fasta scores: E(): 3.7e-24, 52.56 38d in 156 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri PTS system, glucose-specific IIa component Crr or Gsr or Iex or Tgs or TreD or b2417 or c2952 or sf2472 or s2618 SWALL:PTGA_ECOLI (SWALL:P08837) (168 aa) fasta scores: E(): 2.1e-22, 42.35 38d in 170 aa
YP_001252823.1	Similar to Bacillus subtilis hth-type transcriptional regulator GlvR or bsu08190 SWALL:GLVR_BACSU (SWALL:P54717) (254 aa) fasta scores: E(): 3.9e-06, 26.17 38d in 256 aa
YP_001252824.1	Similar to the C-terminal region of Clostridium acetobutylicum hypothetical protein Cac0806 SWALL:Q97KW0 (EMBL:AE007596) (209 aa) fasta scores: E(): 2.3e-07,51.56 38d in 64 aa
YP_001252825.1	Similar to Lactobacillus plantarum cold shock protein 2 CspL or Lp_0031 SWALL:CSP2_LACPL (SWALL:P96349) (66 aa) fasta scores: E(): 3.8e-15, 68.85 38d in 61 aa; Also similar to CBO1387 (63.9 38d.) and CBO1772 (49. 38d.).
YP_001252826.1	Similar to Enterococcus faecalis hypothetical protein ef0747 SWALL:Q837T3 (EMBL:AE016949) (236 aa) fasta scores: E(): 4.1e-24, 45.81 38d in 179 aa, and to Agrobacterium tumefaciens hypothetical protein atu1659 atu1659 or agr_c_3054 SWALL:Q8UEU5 (EMBL:AE009122) (217 aa) fasta scores: E(): 1.1e-21, 55.03 38d in 129 aa
YP_001252827.1	Similar to Bacillus anthracis rrf2 family protein ba4743 SWALL:Q81L85 (EMBL:AE017038) (143 aa) fasta scores: E(): 2e-33, 65.03 38d in 143 aa
YP_001252828.1	Similar to Pseudomonas putida 2-hydroxychromene-2-carboxylate isomerase NahD SWALL:NAHD_PSEPU (SWALL:Q51948) (203 aa) fasta scores: E(): 0.00039, 24 38d in 200 aa, and to Burkholderia sp. DBT1 DbtD SWALL:Q93NA9 (EMBL:AF380367) (207 aa) fasta scores: E(): 1.9e-07, 25.37 38d in 201 aa
YP_001252829.1	Similar to Chromobacterium violaceum hypothetical protein cv0714 SWALL:AAQ58390 (EMBL:AE016912) (212 aa) fasta scores: E(): 5.1e-27, 45.07 38d in 213 aa
YP_001252830.1	Similar to Bacillus subtilis HTH-type transcriptional regulator GlvR or bsu08190 SWALL:GLVR_BACSU (SWALL:P54717) (254 aa) fasta scores: E(): 4.8e-07, 25.71 38d in 245 aa
YP_001252831.1	Similar to Escherichia coli PTS system, maltose and glucose-specific IIabc component MalX or b1621 SWALL:PTOA_ECOLI (SWALL:P19642) (530 aa) fasta scores: E(): 1.5e-62, 38.43 38d in 523 aa, and to Bacillus subtilis PTS system, arbutin-like IIbc component GlvC or GlvCB or glv-2 or bsu08200 SWALL:PTIB_BACSU (SWALL:P54715) (527 aa) fasta scores: E(): 5.1e-61, 37.73 38d in 530 aa; Also highly similar to CBO0277 (53.2 38d)
YP_001252832.1	Similar to Bacillus subtilis maltose-6'-phosphate glucosidase GlvA or GlvG or glv-1 or bsu08180 SWALL:GLVA_BACSU (SWALL:P54716) (449 aa) fasta scores: E(): 7.5e-125, 68.55 38d in 442 aa, and to Escherichia coli probable 6-phospho-alpha-glucosidase GlvG or b3681 SWALL:GLVG_ECOLI (SWALL:P31450) (212 aa) fasta scores: E(): 7e-59, 72.68 38d in 205 aa; Also similar to CBO0278 (73.69 38d) and CBO0267 (49.21 38d); Also highly similar to CBO0278 (73.69 38d)
YP_001252833.1	Similar to Salmonella typhimurium, and Salmonella typhi PTS system, glucose-specific IIa component crr or stm2433 or sty2670 or t0424 SWALL:PTGA_SALTY (SWALL:P02908) (168 aa) fasta scores: E(): 3.7e-15, 40 38d in 150 aa
YP_001252834.1	Similar to Escherichia coli, and Escherichia coli O157:H7 phosphogluconate dehydratase edd or b1851 or z2903 or ecs2561 SWALL:EDD_ECOLI (SWALL:P25530) (603 aa) fasta scores: E(): 5.8e-37, 31.08 38d in 505 aa, and to Clostridium acetobutylicum dihydroxyacid dehydratase cac3604 SWALL:Q97D76 (EMBL:AE007856) (572 aa) fasta scores: E(): 1.4e-145, 63.79 38d in 569 aa
YP_001252835.1	Similar to Bacillus subtilis khg/kdpg aldolase [includes: 4-hydroxy-2-oxoglutarate aldolase KdgA or bsu22100 SWALL:ALKH_BACSU (SWALL:P50846) (196 aa) fasta scores: E(): 4.1e-17, 35.6 38d in 191 aa, and to Streptococcus agalactiae 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase eda-2 or sag1907 SWALL:Q8DXE4 (EMBL:AE014277) (212 aa) fasta scores: E(): 1.6e-39, 54.76 38d in 210 aa
YP_001252836.1	Similar to Escherichia coli 2-dehydro-3-deoxygluconokinase KdgK or b3526 SWALL:KDGK_ECOLI (SWALL:P37647) (309 aa) fasta scores: E(): 2e-08, 26.46 38d in 291 aa
YP_001252837.1	Similar to Bacillus subtilis adenine deaminase AdeC or Ade or bsu14520 SWALL:ADEC_BACSU (SWALL:P39761) (577 aa) fasta scores: E(): 5e-63, 36.17 38d in 575 aa
YP_001252838.1	Similar to Bacillus subtilis transcriptional regulatory protein CssR or bsu33010 SWALL:CSSR_BACSU (SWALL:O32192) (225 aa) fasta scores: E(): 1.1e-40, 50.89 id in 224 aa
YP_001252839.1	Similar to Bacillus subtilis sensor protein CssS or bsu33020 SWALL:CSSS_BACSU (SWALL:O32193) (451 aa) fasta scores: E(): 9e-33, 30.17 38d in 464 aa
YP_001252840.1	Similar to Escherichia coli bactoprenol glucosyl transferase homolog from prophage cps-53 yfdh or b2351 SWALL:GTRB_ECOLI (SWALL:P77293) (306 aa) fasta scores: E(): 2.1e-39, 40.26 38d in 298 aa
YP_001252841.1	Similar to Actinobacillus actinomycetemcomitans dTDP-glucose-4-keto-6-deoxy-D-glucose reductase Fcd SWALL:Q9AQB3 (EMBL:AF213680) (130 aa) fasta scores: E(): 1.3e-05, 30.46 38d in 128 aa, and to Listeria innocua teichoic acid glycosylation protein GtcA SWALL:Q9KJU8 (EMBL:AF160251) (145 aa) fasta scores: E(): 0.0023, 25.58 id in 129 aa
YP_001252842.1	Similar to Streptomyces carzinostaticus subsp. neocarzinostaticus membrane protein SWALL:Q84HC4 (EMBL:AY117439) (720 aa) fasta scores: E(): 2.4e-25,27.37 38d in 767 aa
YP_001252843.1	Similar to Clostridium tetani transcriptional regulatory protein ctc01411 SWALL:Q894X3 (EMBL:AE015941) (329 aa) fasta scores: E(): 4.8e-11, 27.5 38d in 349 aa
YP_001252844.1	Similar to Clostridium tetani iron(III) dicitrate-binding periplasmic protein ctc00960 SWALL:Q896P0 (EMBL:AE015939) (354 aa) fasta scores: E(): 4.9e-30, 32 38d in 350 aa
YP_001252845.1	Similar to Bordetella avium BhuU bhuU SWALL:Q8L1U4 (EMBL:AY095952) (334 aa) fasta scores: E(): 1.2e-35,38.69 38d in 336 aa, and to Clostridium tetani iron(iii) dicitrate transport system permease fecd or ctc00961 SWALL:Q896N9 (EMBL:AE015939) (377 aa) fasta scores: E(): 9.5e-69, 53.93 38d in 343 aa
YP_001252846.1	Similar to Streptococcus agalactiae FhuC fhuC SWALL:Q8VQV6 (EMBL:AF452237) (264 aa) fasta scores: E(): 5.2e-26, 31.9 38d in 257 aa, and to Clostridium tetani hemin transport system ATP-binding protein fece fece or ctc00962 SWALL:Q896N8 (EMBL:AE015939) (252 aa) fasta scores: E(): 4.8e-47, 55.15 38d in 252 aa
YP_001252847.1	Similar to Clostridium acetobutylicum probable cation efflux pump cac3354 SWALL:Q97DW6 (EMBL:AE007832) (452 aa) fasta scores: E(): 9.7e-57, 38.73 38d in 426 aa
YP_001252848.1	Similar to Clostridium tetani transcriptional regulatory protein ctc00913 SWALL:Q896T5 (EMBL:AE015939) (334 aa) fasta scores: E(): 1.4e-09, 26.42 38d in 333 aa
YP_001252849.1	Similar to Bacillus subtilis ferrichrome-binding protein precursor FhuD or bsu33320 SWALL:FHUD_BACSU (SWALL:P37580) (315 aa) fasta scores: E(): 5.4e-25, 31.73 id in 312 aa. Also similar to CBO0310 35.144 38dentity in 313 aa overlap
YP_001252851.1	Similar to Clostridium tetani transcriptional regulatory protein ctc01411 SWALL:Q894X3 (EMBL:AE015941) (329 aa) fasta scores: E(): 7.3e-10, 22.29 38d in 323 aa
YP_001252852.1	Similar to N-terminal regions of several NADH dehydrogenase subunit 1 SWALL:Q953M0 (EMBL:AF348079) (318 aa) fasta scores: E(): 2.1, 47.05 38d in 34 aa
YP_001252853.1	Similar to Bacillus subtilis ferrichrome-binding protein precursor FhuD or bsu33320 SWALL:FHUD_BACSU (SWALL:P37580) (315 aa) fasta scores: E(): 6.9e-19, 32.39 id in 321 aa. Also similar to CBO0306 35.144 38dentity in 313 aa overlap
YP_001252854.1	Similar to Bacillus subtilis ferrichrome transport system permease FhuB or bsu33310 SWALL:FHUB_BACSU (SWALL:P49936) (384 aa) fasta scores: E(): 2.1e-53, 46.52 id in 331 aa
YP_001252855.1	Similar to Bacillus subtilis ferrichrome transport system permease FhuG or bsu33300 SWALL:FHUG_BACSU (SWALL:P49937) (336 aa) fasta scores: E(): 3.4e-51, 41.39 id in 343 aa
YP_001252856.1	Similar to Bacillus subtilis ferrichrome transport ATP-binding protein FhuC or bsu33290 SWALL:FHUC_BACSU (SWALL:P49938) (269 aa) fasta scores: E(): 3.1e-60, 63.29 id in 267 aa
YP_001252857.1	Similar to Clostridium perfringens probable ABC transporter cpe2296 SWALL:Q8XI28 (EMBL:AP003193) (566 aa) fasta scores: E(): 2.6e-72, 41.62 38d in 567 aa
YP_001252858.1	Similar to Escherichia coli, and Escherichia coli O6 transcriptional regulator MntR or b0817 or c0903 SWALL:MNTR_ECOLI (SWALL:P75787) (155 aa) fasta scores: E(): 3.6e-07, 30 38d in 120 aa
YP_001252859.1	Similar to Bacillus subtilis xanthine permease PbuX or bsu22060 SWALL:PBUX_BACSU (SWALL:P42086) (438 aa) fasta scores: E(): 1e-52, 37.77 38d in 405 aa
YP_001252860.1	Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine
YP_001252861.1	Similar to Bacillus cereus two-component response regulator bc4835 SWALL:Q816J5 (EMBL:AE017013) (231 aa) fasta scores: E(): 7.7e-51, 60.08 38d in 228 aa
YP_001252862.1	Similar to Bacillus cereus two component system histidine kinase bc4836 SWALL:Q816J4 (EMBL:AE017013) (340 aa) fasta scores: E(): 4.2e-48, 41.53 38d in 325 aa
YP_001252863.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell
YP_001252864.1	Similar to Bacillus cereus ABC transporter ATP-binding protein bc4839 SWALL:Q816J1 (EMBL:AE017013) (250 aa) fasta scores: E(): 7.3e-58, 68.16 38d in 245 aa
YP_001252865.1	Similar to Bacillus cereus ABC transporter permease bc1995 SWALL:Q81EI1 (EMBL:AE017004) (626 aa) fasta scores: E(): 2e-63, 34.07 38d in 628 aa
YP_001252867.1	Similar to Clostridium tetani protein,murein hydrolase exporter ctc01825 SWALL:Q893J3 (EMBL:AE015942) (117 aa) fasta scores: E(): 1.9e-30,67.52 38d in 117 aa
YP_001252868.1	Similar to Clostridium tetani murein hydrolase export regulator ctc01826 SWALL:Q893J2 (EMBL:AE015942) (229 aa) fasta scores: E(): 1.6e-59, 72.92 38d in 229 aa
YP_001252869.1	Similar to Clostridium acetobutylicum predicted membrane protein, cf-20 family cac0208 SWALL:Q97MI8 (EMBL:AE007534) (213 aa) fasta scores: E(): 2.4e-19,35.04 38d in 214 aa
YP_001252870.1	Similar to Clostridium acetobutylicum uncharacterized protein cac3492 SWALL:Q97DI5 (EMBL:AE007846) (290 aa) fasta scores: E(): 2.2e-20,54.63 38d in 108 aa
YP_001252871.1	Similar to the C-terminal region of Clostridium acetobutylicum uncharacterized protein cac3492 SWALL:Q97DI5 (EMBL:AE007846) (290 aa) fasta scores: E(): 3.4e-15, 41.04 38d in 134 aa
YP_001252872.1	Similar to Clostridium tetani ATP-dependent Zn protease ctc00401 SWALL:Q898P3 (EMBL:AE015937) (509 aa) fasta scores: E(): 1.3e-177, 88.84 38d in 502 aa
YP_001252873.1	Similar to Clostridium perfringens hypothetical protein Cpe1563 SWALL:Q8XK40 (EMBL:AP003191) (188 aa) fasta scores: E(): 3.1e-37, 53.4 38d in 176 aa
YP_001252874.1	Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 1.6e-23, 40.52 38d in 153 aa; Also similar to CBO0335 (34.4 38d) and CBO0337 (42.6 38d).
YP_001252875.1	Similar to Clostridium perfringens hypothetical protein Cpe1561 SWALL:Q8XK42 (EMBL:AP003191) (214 aa) fasta scores: E(): 1.3e-33, 44.39 38d in 214 aa
YP_001252877.1	Similar to Clostridium perfringens hypothetical protein Cpe1560 SWALL:Q8XK43 (EMBL:AP003191) (563 aa) fasta scores: E(): 3.2e-129, 61.02 38d in 567 aa
YP_001252878.1	Similar to Bacillus anthracis acetyltransferase,GnaT family ba3530 SWALL:Q81YL2 (EMBL:AE017035) (179 aa) fasta scores: E(): 3e-05, 25.94 38d in 158 aa
YP_001252879.1	Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 6.5e-10, 28.77 38d in 139 aa; Also similar to CBO0331 (34.4 38d) and CBO0337 (33.1 38d).
YP_001252880.1	Similar to Clostridium acetobutylicum sensory transduction histidine kinase cac0903 SWALL:Q97KL4 (EMBL:AE007605) (683 aa) fasta scores: E(): 3e-47, 32.62 id in 610 aa
YP_001252881.1	Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 4.2e-18, 39.07 38d in 151 aa; Also similar to CBO0331 (42. 38d) and CBO0335 (33.1 38d).
YP_001252882.1	Similar to Clostridium perfringens hypothetical protein Cpe1561 SWALL:Q8XK42 (EMBL:AP003191) (214 aa) fasta scores: E(): 8.7e-24, 35.92 38d in 206 aa
YP_001252884.1	Similar to Clostridium acetobutylicum sensory transduction histidine kinase cac0903 SWALL:Q97KL4 (EMBL:AE007605) (683 aa) fasta scores: E(): 1.1e-45,34.81 38d in 586 aa
YP_001252885.1	Similar to Clostridium perfringens hypothetical protein Cpe1494 SWALL:Q8XKA6 (EMBL:AP003190) (277 aa) fasta scores: E(): 1.7e-64, 73.63 38d in 220 aa
YP_001252886.1	Similar to Fusobacterium nucleatum transcriptional regulator, MerR family fn1928 SWALL:Q8RHS0 (EMBL:AE010495) (184 aa) fasta scores: E(): 2.5e-14, 36.06 38d in 183 aa
YP_001252887.1	Similar to Clostridium perfringens membrane-spanning transporter protein cpe0166 SWALL:Q8XP02 (EMBL:AP003185) (495 aa) fasta scores: E(): 1.3e-43,30.62 38d in 480 aa
YP_001252888.1	Similar to Clostridium perfringens probable proline dipeptidase cpe2497 SWALL:Q8XHI6 (EMBL:AP003194) (358 aa) fasta scores: E(): 1.7e-79, 56.11 38d in 360 aa
YP_001252889.1	Similar to Clostridium acetobutylicum aldehyde-alcohol dehydrogenase [includes: alcohol dehydrogenase; acetaldehyde dehydrogenase [acetylating] (EC 1.2.1.10) (acdh); pyruvate-formate-lyase deactivase (pfl deactivase)] AdhE or Aad or cap0162 SWALL:ADHE_CLOAB (SWALL:P33744) (862 aa) fasta scores: E(): 2.6e-212,65.04 38d in 861 aa, and to Escherichia coli, and Escherichia coli O157:H7 aldehyde-alcohol dehydrogenase [includes: alcohol dehydrogenase; acetaldehyde dehydrogenase [acetylating] (EC 1.2.1.10) (acdh); pyruvate-formate-lyase deactivase (pfl deactivase)] AdhE or Ana or b1241 or z2016 or ecs1741 SWALL:ADHE_ECOLI (SWALL:P17547) (890 aa) fasta scores: E(): 1.3e-201,62.44 38d in 860 aa
YP_001252890.1	Similar to Clostridium acetobutylicum predicted diverged chey-domain cac1602 SWALL:Q97IN8 (EMBL:AE007670) (103 aa) fasta scores: E(): 6.3e-16, 47.87 38d in 94 aa
YP_001252891.1	Similar to Clostridium tetani protein ctc00782 SWALL:Q897F6 (EMBL:AE015938) (202 aa) fasta scores: E(): 1.9e-28, 41.45 38d in 193 aa
YP_001252892.1	Similar to Clostridium acetobutylicum hypothetical protein Cac0449 SWALL:Q97LV5 (EMBL:AE007559) (156 aa) fasta scores: E(): 1.5e-29, 56.66 38d in 150 aa
YP_001252893.1	Similar to Aspergillus oryzae fucose-specific lectin FleA SWALL:Q8TGE0 (EMBL:AB072379) (310 aa) fasta scores: E(): 0.00038, 23.27 38d in 275 aa, and to Clostridium tetani sialidase ctc00453 SWALL:Q898J4 (EMBL:AE015937) (292 aa) fasta scores: E(): 1.4e-89, 71.95 38d in 271 aa
YP_001252894.1	Similar to Clostridium perfringens hypothetical protein Cpe1026 SWALL:Q8XLL5 (EMBL:AP003189) (185 aa) fasta scores: E(): 3.9e-34, 54.7 38d in 170 aa
YP_001252895.1	Similar to Clostridium acetobutylicum predicted xylanase/chitin deacetylase cac2396 SWALL:Q97GH1 (EMBL:AE007739) (280 aa) fasta scores: E(): 3.1e-34, 45.6 id in 250 aa
YP_001252896.1	Similar to Bacillus subtilis alkaline phosphatase synthesis transcriptional regulatory protein PhoP or bsu29110 SWALL:PHOP_BACSU (SWALL:P13792) (240 aa) fasta scores: E(): 1.6e-34, 46.72 38d in 229 aa
YP_001252897.1	Similar to Clostridium tetani alkaline phosphatase synthesis sensor protein phor or ctc01951 SWALL:Q892Y2 (EMBL:AE015942) (471 aa) fasta scores: E(): 9.7e-94,56.86 38d in 459 aa
YP_001252898.1	Similar to Clostridium tetani protein ctc01950 SWALL:Q892Y3 (EMBL:AE015942) (509 aa) fasta scores: E(): 4.1e-53, 35.15 38d in 512 aa
YP_001252899.1	Similar to Clostridium tetani rRNA methylase ctc00455 SWALL:Q898J2 (EMBL:AE015937) (192 aa) fasta scores: E(): 1.4e-32, 54.64 38d in 183 aa
YP_001252900.1	Similar to Clostridium tetani membrane spanning protein ctc01769 SWALL:Q893P4 (EMBL:AE015942) (220 aa) fasta scores: E(): 4.7e-43, 51.61 38d in 217 aa
YP_001252901.1	Similar to Chromobacterium violaceum hypothetical protein cv0542 SWALL:AAQ58219 (EMBL:AE016911) (633 aa) fasta scores: E(): 2.3e-57, 35.07 38d in 536 aa
YP_001252902.1	Similar to Clostridium tetani protein ctc01330 SWALL:Q895E6 (EMBL:AE015940) (403 aa) fasta scores: E(): 1.5e-80, 50 38d in 398 aa
YP_001252903.1	Similar to Thermoanaerobacter tengcongensis na+-driven multidrug efflux pump NorM2 or tte1811 SWALL:Q8R919 (EMBL:AE013133) (449 aa) fasta scores: E(): 1.7e-69, 42.41 38d in 448 aa
YP_001252904.1	Similar to Thermotoga maritima hypothetical protein Tm1558 tm1558 SWALL:Q9X1P4 (EMBL:AE001801) (182 aa) fasta scores: E(): 4.9e-25, 47.09 38d in 189 aa
YP_001252905.1	Similar to Methanosarcina mazei Na(+)/H(+) antiporter mm0294 SWALL:Q8Q044 (EMBL:AE013254) (596 aa) fasta scores: E(): 2.4e-25, 30.64 38d in 385 aa
YP_001252906.1	Similar to Clostridium tetani aminotransferase ctc01359 SWALL:Q895C0 (EMBL:AE015940) (440 aa) fasta scores: E(): 6.2e-91, 55.55 38d in 432 aa
YP_001252907.1	Similar to Clostridium tetani membrane spanning protein, similar to vegetatible incompatibility protein het-e-1 ctc01844 SWALL:Q893H9 (EMBL:AE015942) (345 aa) fasta scores: E(): 2.1e-54, 46.66 38d in 345 aa
YP_001252908.1	Similar to Clostridium tetani ser/thr and tyr protein phosphatase ctc02044 SWALL:Q892P9 (EMBL:AE015943) (208 aa) fasta scores: E(): 6e-36, 43.35 38d in 203 aa
YP_001252909.1	Similar to Enterococcus faecium regulatory protein VanR vanR SWALL:VANR_ENTFC (SWALL:Q06239) (231 aa) fasta scores: E(): 2.2e-41, 51.94 38d in 231 aa
YP_001252910.1	Similar to Enterococcus faecalis VansE SWALL:Q93A42 (EMBL:AF430807) (357 aa) fasta scores: E(): 1.1e-25,32.16 38d in 370 aa
YP_001252911.1	Similar to Escherichia coli sodium/pantothenate symporter PanF or b3258 SWALL:PANF_ECOLI (SWALL:P16256) (483 aa) fasta scores: E(): 1.3e-21, 24.83 38d in 451 aa
YP_001252912.1	Similar to Rhodobacter capsulatus electron transport complex protein RnfC SWALL:RNFC_RHOCA (SWALL:Q52716) (519 aa) fasta scores: E(): 1.1e-57, 39.18 id in 444 aa
YP_001252913.1	Similar to Pseudomonas stutzeri electron transport complex protein RnfD SWALL:RNFD_PSEST (SWALL:Q9EVN4) (354 aa) fasta scores: E(): 1.1e-19, 38.29 38d in 329 aa
YP_001252914.1	Similar to Pseudomonas stutzeri electron transport complex protein RnfG SWALL:RNFG_PSEST (SWALL:Q9EVN3) (228 aa) fasta scores: E(): 5.1e-07, 30.15 38d in 189 aa
YP_001252915.1	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase
YP_001252916.1	Similar to Escherichia coli, Escherichia coli O6,and Escherichia coli O157:H7 electron transport complex protein RnfA or b1627 or c2019 or z2633 or ecs2336 SWALL:RNFA_ECOLI (SWALL:P76181) (193 aa) fasta scores: E(): 2.5e-36, 55.91 38d in 186 aa
YP_001252917.1	involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate
YP_001252918.1	Similar to the N-terminal region of Clostridium difficile Cwp66 SWALL:Q9FA27 (EMBL:AF093106) (610 aa) fasta scores: E(): 1.7e-14, 30.85 38d in 350 aa, and to Bacillus subtilis N-acetylmuramoyl-L-alanine amidase CwlB precursor LycT or cwlb or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-08, 29.64 id in 361 aa
YP_001252919.1	Similar to Clostridium tetani heptaprenyl diphosphate synthase component I ctc01025 SWALL:Q896H9 (EMBL:AE015939) (181 aa) fasta scores: E(): 2.6e-38,63.37 38d in 172 aa
YP_001252920.1	Similar to Clostridium tetani membrane associated protein ctc01026 SWALL:Q896H8 (EMBL:AE015939) (132 aa) fasta scores: E(): 1.8e-16, 43.28 38d in 134 aa
YP_001252921.1	Similar to Clostridium tetani thiamine biosynthesis lipoprotein apbe precursor ApbE or ctc01027 SWALL:Q896H7 (EMBL:AE015939) (342 aa) fasta scores: E(): 1.2e-63,53.48 38d in 344 aa
YP_001252922.1	Similar to Bacillus sphaericus surface-layer 125 kDa protein precursor SWALL:SLAP_BACSH (SWALL:P38537) (1176 aa) fasta scores: E(): 2.3e-17, 25.3 38d in 1308 aa,and to Clostridium difficile Cwp66 cwp66 SWALL:Q9F9G7 (EMBL:AF194870) (610 aa) fasta scores: E(): 5.3e-16,25.59 38d in 547 aa
YP_001252923.1	Similar to Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlb precursor lytc or cwlb or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 2.4e-29, 33.09 38d in 417 aa, and to Clostridium difficile Cwp66 cwp66 SWALL:Q9FA27 (EMBL:AF093106) (610 aa) fasta scores: E(): 1.1e-26,31.93 38d in 501 aa
YP_001252924.1	Similar to Clostridium difficile Cwp66 SWALL:Q9F9G7 (EMBL:AF194870) (610 aa) fasta scores: E(): 1.4e-17,26.37 38d in 565 aa, and to Bacillus subtilis N-acetylmuramoyl-L-alanine amidase CwlB precursor lytc or cwlb or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 5.8e-12, 27.72 38d in 339 aa
YP_001252926.1	Similar to Staphylococcus caprae IcaC SWALL:Q9AIQ5 (EMBL:AF246927) (357 aa) fasta scores: E(): 6.4e-13,25.71 38d in 350 aa, and to Clostridium tetani membrane protein ctc00459 SWALL:Q898I8 (EMBL:AE015937) (348 aa) fasta scores: E(): 2.2e-44, 36.91 38d in 344 aa
YP_001252927.1	Similar to Thermoanaerobacter tengcongensis hypothetical protein Tte1561 SWALL:Q8R9P4 (EMBL:AE013112) (355 aa) fasta scores: E(): 3.2e-20, 37.09 38d in 248 aa
YP_001252928.1	Similar to Methanosarcina mazei phosphate-binding protein mm2005 SWALL:Q8PVG0 (EMBL:AE013439) (302 aa) fasta scores: E(): 2.8e-18, 30.16 38d in 305 aa
YP_001252929.1	Similar to Methanosarcina acetivorans phosphate ABC transporter permease pstc or ma0888 SWALL:Q8TSB0 (EMBL:AE010753) (296 aa) fasta scores: E(): 4.7e-33,36.26 38d in 284 aa
YP_001252930.1	Similar to Vibrio parahaemolyticus phosphate ABC transporter permease vpa1459 SWALL:Q87G58 (EMBL:AP005089) (287 aa) fasta scores: E(): 3.4e-30,38.54 38d in 275 aa
YP_001252931.1	Similar to Clostridium tetani phosphate import ATP-binding protein PstB or ctc01135 SWALL:Q895Y0 (EMBL:AE015939) (249 aa) fasta scores: E(): 1.8e-43,53.01 38d in 249 aa
YP_001252932.1	Similar to Methanopyrus kandleri had family hydrolase, a mk0529 SWALL:Q8TXY0 (EMBL:AE010347) (158 aa) fasta scores: E(): 4.9e-13, 35.03 38d in 157 aa
YP_001252933.1	Similar to Oceanobacillus iheyensis cationic amino acid transporter ob0489 SWALL:Q8ESX7 (EMBL:AP004594) (469 aa) fasta scores: E(): 1.8e-96, 51.68 38d in 476 aa
YP_001252934.1	Similar to Bacillus subtilis lipoprotein yhcn precursor yhcn or bsu09150 SWALL:YHCN_BACSU (SWALL:P54598) (189 aa) fasta scores: E(): 2e-08, 27.89 38d in 190 aa
YP_001252935.1	Similar to Clostridium tetani protein ctc00525 SWALL:Q898D7 (EMBL:AE015937) (279 aa) fasta scores: E(): 5.4e-39, 47.6 38d in 250 aa
YP_001252936.1	Similar to Bacillus anthracis hypothetical protein ba0337 SWALL:Q81ZD2 (EMBL:AE017025) (235 aa) fasta scores: E(): 3e-22, 31.35 38d in 236 aa
YP_001252937.1	Similar to Clostridium acetobutylicum single-strand binding protein 1 Ssb1 or cac0945 SWALL:Q97KH4 (EMBL:AE007610) (110 aa) fasta scores: E(): 2.3e-17,47.66 38d in 107 aa
YP_001252938.1	Similar to Clostridium acetobutylicum predicted membrane protein cac0950 SWALL:Q97KG9 (EMBL:AE007610) (183 aa) fasta scores: E(): 2.9e-32, 49.72 38d in 183 aa
YP_001252939.1	Similar to Campylobacter jejuni ferric uptake regulation protein Fur or cj0400 SWALL:FUR_CAMJE (SWALL:P48796) (157 aa) fasta scores: E(): 3.3e-08, 27.69 id in 130 aa, and to Bacillus subtilis peroxide operon regulator PerR or bsu08730 SWALL:PERR_BACSU (SWALL:P71086) (145 aa) fasta scores: E(): 4.8e-08, 30.76 38d in 130 aa
YP_001252940.1	Similar to Clostridium acetobutylicum hypothetical protein Cac0952 SWALL:Q97KG7 (EMBL:AE007610) (114 aa) fasta scores: E(): 1.3e-08, 32.99 38d in 97 aa
YP_001252941.1	Similar to Clostridium tetani protein ctc00529 SWALL:Q898D3 (EMBL:AE015937) (357 aa) fasta scores: E(): 7.6e-85, 63.17 38d in 353 aa
YP_001252942.1	Similar to Clostridium tetani membrane protein ctc00530 SWALL:Q898D2 (EMBL:AE015937) (345 aa) fasta scores: E(): 3.5e-47, 48.22 38d in 338 aa
YP_001252943.1	Similar to Bacillus subtilis methyl-accepting chemotaxis protein TlpB or bsu31230 SWALL:TLPB_BACSU (SWALL:P39217) (662 aa) fasta scores: E(): 2.6e-40, 31.81 id in 682 aa
YP_001252944.1	Similar to Escherichia coli, and Shigella flexneri cell division protein FtsH hflb or ftsh or MrsC or TolZ or b3178 or sf3218 or s3436 SWALL:FTSH_ECOLI (SWALL:P28691) (644 aa) fasta scores: E(): 8.6e-61, 38.8 38d in 585 aa
YP_001252945.1	Similar to Clostridium perfringens hypothetical protein Cpe1451 SWALL:Q8XKE9 (EMBL:AP003190) (323 aa) fasta scores: E(): 1.4e-30, 32.08 38d in 321 aa
YP_001252946.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_001252947.1	Similar to Clostridium perfringens hypothetical protein Cpe1449 SWALL:Q8XKF1 (EMBL:AP003190) (53 aa) fasta scores: E(): 0.0001, 45.28 38d in 53 aa
YP_001252948.1	Similar to Bacillus stearothermophilus transcriptional activator NprA SWALL:NPRA_BACST (SWALL:P43130) (406 aa) fasta scores: E(): 5.8e-06, 19.61 id in 413 aa, and to Bacillus subtilis response regulator aspartate phosphatase A RapA or GsiaA or spo0l or bsu12430 SWALL:RAPA_BACSU (SWALL:Q00828) (378 aa) fasta scores: E(): 0.0019, 21.46 38d in 368 aa
YP_001252949.1	Similar to Bacillus thuringiensis transcriptional activator NprR nprR SWALL:Q9AQ53 (EMBL:AF220563) (425 aa) fasta scores: E(): 0.00056, 21.33 38d in 436 aa, and to Bacillus subtilis response regulator aspartate phosphatase B RapB or SpoOP or bsu36690 SWALL:RAPB_BACSU (SWALL:P70962) (377 aa) fasta scores: E(): 0.014, 20.15 id in 377 aa
YP_001252951.1	Similar to Pseudomonas putida isonitrile hydratase InhA SWALL:Q8G9F9 (EMBL:AB088117) (228 aa) fasta scores: E(): 1.4e-14, 30.27 38d in 185 aa, and to Pseudomonas aurantiaca DarS SWALL:Q84H27 (EMBL:AY135187) (228 aa) fasta scores: E(): 1.5e-13, 29.03 38d in 186 aa
YP_001252952.1	Similar to Clostridium tetani protein ctc02189 SWALL:Q892B6 (EMBL:AE015943) (314 aa) fasta scores: E(): 1.3e-78, 69.8 38d in 308 aa
YP_001252953.1	Similar to Escherichia coli, Escherichia coli O6,and Escherichia coli O157:H7 ClpB protein ClpB or HtpM or b2592 or c3114 or z3886 or ecs3455 SWALL:CLPB_ECOLI (SWALL:P03815) (857 aa) fasta scores: E(): 5.3e-137,51.74 38d in 862 aa, and to Synechococcus sp. ClpB protein clpB SWALL:CLPB_SYNP7 (SWALL:P53533) (883 aa) fasta scores: E(): 6.9e-152, 58.66 38d in 866 aa
YP_001252954.1	Similar to Clostridium acetobutylicum cobyric acid synthase CobQ cac0961 SWALL:Q97KF8 (EMBL:AE007611) (243 aa) fasta scores: E(): 8.8e-72, 77.08 38d in 240 aa
YP_001252955.1	Similar to Clostridium acetobutylicum udp-N-acetylmuramyl tripeptide synthetase cac0962 SWALL:Q97KF7 (EMBL:AE007611) (435 aa) fasta scores: E(): 2.2e-112, 64.76 38d in 437 aa
YP_001252956.1	Similar to Streptococcus mutans mannose-6-phosphate isomerase Pmi or ManA or smu.1839 SWALL:MANA_STRMU (SWALL:Q59935) (316 aa) fasta scores: E(): 1.1e-29, 35.25 id in 312 aa
YP_001252957.1	Similar to Clostridium tetani protein ctc00544 SWALL:Q898B9 (EMBL:AE015937) (381 aa) fasta scores: E(): 8.2e-56, 44.75 38d in 362 aa
YP_001252958.1	phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell
YP_001252959.1	Similar to Clostridium tetani come-like protein,metallo beta-lactamase superfamily hydrolase ctc00821 SWALL:Q897B9 (EMBL:AE015938) (304 aa) fasta scores: E(): 6.5e-49, 48.95 38d in 288 aa
YP_001252960.1	Similar to Escherichia coli 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC or ParF or b3018 SWALL:PLSC_ECOLI (SWALL:P26647) (245 aa) fasta scores: E(): 1.9e-09, 28.8 38d in 184 aa, and to Clostridium tetani 1-acyl-sn-glycerol-3-phosphate acyltransferase ctc00551 SWALL:Q898B3 (EMBL:AE015937) (242 aa) fasta scores: E(): 3.9e-41, 45.57 38d in 237 aa
YP_001252961.1	Similar to Streptomyces hygroscopicus 2-phosphinomethylmalic acid synthase PmmS SWALL:Q9LCB4 (EMBL:AB029822) (440 aa) fasta scores: E(): 3.5e-55,38.53 38d in 436 aa, and to Salmonella typhimurium 2-isopropylmalate synthase LeuA or stm0113 SWALL:LEU1_SALTY (SWALL:P15875) (522 aa) fasta scores: E(): 7.1e-10, 25.91 38d in 355 aa
YP_001252962.1	Catalyzes the conversion of citrate to isocitrate
YP_001252963.1	Similar to Coccidioides immitis isocitrate dehydrogenase IcdH SWALL:Q8X1D0 (EMBL:AF439265) (347 aa) fasta scores: E(): 2e-58, 51.35 38d in 333 aa
YP_001252964.1	Similar to Bacillus subtilis glutamine ABC transporter GlnQ SWALL:O34677 (EMBL:Z99117) (242 aa) fasta scores: E(): 4.9e-46, 56.84 38d in 241 aa, and to Corynebacterium glutamicum glutamate transport ATP-binding protein GluA or cgl1950 SWALL:GLUA_CORGL (SWALL:P48243) (242 aa) fasta scores: E(): 2.1e-43, 56.01 38d in 241 aa
YP_001252965.1	Similar to Clostridium tetani na+/h+ antiporter ctc00567 SWALL:Q898A2 (EMBL:AE015937) (586 aa) fasta scores: E(): 2.1e-158, 70.1 38d in 572 aa
YP_001252966.1	Similar to Clostridium acetobutylicum uncharacterized protein, ortholog yuza b.subtilis cac0976 SWALL:Q97KE3 (EMBL:AE007613) (69 aa) fasta scores: E(): 7.5e-19, 79.68 38d in 64 aa
YP_001252967.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_001252968.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_001252969.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_001252970.1	Similar to Bacillus subtilis ATP-dependent nuclease subunit B AddB or bsu10620 SWALL:ADDB_BACSU (SWALL:P23477) (1166 aa) fasta scores: E(): 5.1e-92, 34.47 38d in 1166 aa
YP_001252972.1	Similar to Clostridium tetani hypothetical protein ctc01031 SWALL:Q896H3 (EMBL:AE015939) (222 aa) fasta scores: E(): 1.8e-19, 37.44 38d in 211 aa
YP_001252973.1	Similar to Clostridium tetani protein ctc01032 SWALL:Q896H2 (EMBL:AE015939) (235 aa) fasta scores: E(): 1.1e-41, 50.67 38d in 223 aa
YP_001252974.1	Similar to Bacteroides thetaiotaomicron transcriptional regulator bt0507 SWALL:Q8AAF8 (EMBL:AE016928) (202 aa) fasta scores: E(): 9.5e-06,26.31 38d in 190 aa
YP_001252975.1	Similar to Escherichia coli, and Escherichia coli O6 hydrogenase isoenzymes nickel incorporation protein HypB or b2727 or c3287 SWALL:HYPB_ECOLI (SWALL:P24190) (290 aa) fasta scores: E(): 3e-28, 40.74 38d in 216 aa
YP_001252976.1	Similar to Moorella thermoacetica formate dehydrogenase beta subunit fdhB SWALL:P77907 (EMBL:U73807) (707 aa) fasta scores: E(): 5.5e-36, 34.26 38d in 502 aa
YP_001252977.1	Similar to Bradyrhizobium japonicum hydrogenase nickel incorporation protein HypA or bll6932 SWALL:HYPA_BRAJA (SWALL:Q45256) (113 aa) fasta scores: E(): 6.6e-08, 30 38d in 110 aa
YP_001252979.1	Similar to Carsonella ruddii alkyl hydroperoxide reductase small subunit AhpC SWALL:Q9AIY8 (EMBL:AF211135) (177 aa) fasta scores: E(): 7.1, 27.32 38d in 161 aa
YP_001252980.1	Similar to Bacillus subtilis ATP-dependent nuclease subunit A AddA or bsu10630 SWALL:ADDA_BACSU (SWALL:P23478) (1232 aa) fasta scores: E(): 1.2e-58, 38.82 38d in 1288 aa
YP_001252981.1	Similar to Bacillus subtilis methyl-accepting chemotaxis protein TlpC or bsu03440 SWALL:TLPC_BACSU (SWALL:P39209) (573 aa) fasta scores: E(): 1.6e-22, 32.24 id in 397 aa
YP_001252982.1	catalyzes the release of the N-terminal amino acid from a tripeptide
YP_001252983.1	Similar to Bacillus cereus hypothetical membrane spanning protein bc1989 SWALL:Q813P5 (EMBL:AE017004) (321 aa) fasta scores: E(): 6e-42, 41.23 38d in 308 aa
YP_001252986.1	Similar to Bacillus anthracis metallo-beta-lactamase ba2399 SWALL:Q81QM5 (EMBL:AE017031) (288 aa) fasta scores: E(): 3.5e-34,40.43 38d in 230 aa
YP_001252987.1	Similar to Methanosarcina mazei protein mm1395 SWALL:Q8PX27 (EMBL:AE013374) (154 aa) fasta scores: E(): 8e-25, 48.36 38d in 153 aa
YP_001252988.1	Similar to Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlb precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 1.9e-30, 32.7 38d in 318 aa
YP_001252989.1	Similar to Listeria innocua hypothetical protein Lin1851 lin1851 SWALL:Q92AR8 (EMBL:AL596170) (213 aa) fasta scores: E(): 2.2e-40, 51.65 38d in 211 aa
YP_001252990.1	Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 5.9e-25, 33.84 38d in 260 aa
YP_001252991.1	Similar to Thermoanaerobacter tengcongensis sam-dependent methyltransferases smta5 or tte2398 SWALL:Q8R7K7 (EMBL:AE013182) (222 aa) fasta scores: E(): 0.0023, 25.22 38d in 218 aa
YP_001252992.1	Similar to Bacillus subtilis hypothetical protein yuxh or bsu31740 SWALL:YUXH_BACSU (SWALL:P14203) (409 aa) fasta scores: E(): 1.1e-47, 40.04 38d in 412 aa
YP_001252993.1	Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate
YP_001252994.1	Similar to Bacillus subtilis hydroxyethylthiazole kinase ThiM or ThiK or ipa-25d or bsu38300 SWALL:THIM_BACSU (SWALL:P39593) (272 aa) fasta scores: E(): 7.5e-30, 38.82 38d in 255 aa
YP_001252995.1	This CDS is also similar to CBO0771 (52.308 identity in 260 aa overlap)
YP_001252996.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_001252997.1	Similar to Pseudomonas aeruginosa leucine-,isoleucine-, valine-, threonine-, and alanine-binding protein precursor BraC or pa1074 SWALL:BRAC_PSEAE (SWALL:P21175) (373 aa) fasta scores: E(): 3.9e-25, 29.36 id in 378 aa
YP_001252998.1	Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport system permease brad brad or pa1073 SWALL:BRAD_PSEAE (SWALL:P21627) (307 aa) fasta scores: E(): 5.6e-23, 37 38d in 300 aa
YP_001252999.1	Similar to Bifidobacterium longum permease of ABC transporter for branched-chain amino acids bl1716 SWALL:Q8G3P1 (EMBL:AE014805) (358 aa) fasta scores: E(): 1.7e-36, 41.1 38d in 309 aa
YP_001253000.1	Similar to Bordetella bronchiseptica ABC transport system ATP-binding protein bb0369 SWALL:CAE30867 (EMBL:BX640438) (244 aa) fasta scores: E(): 2e-32, 42.43 id in 238 aa
YP_001253001.1	Similar to Salmonella typhimurium, and Salmonella typhi high-affinity branched-chain amino acid transport ATP-binding protein LivF or LivG or stm3560 or sty4252 or t3962 SWALL:LIVF_SALTY (SWALL:P30294) (237 aa) fasta scores: E(): 5.5e-34, 44.87 38d in 234 aa
YP_001253002.1	Similar to Methanobacterium thermoautotrophicum protein mth526 SWALL:O26626 (EMBL:AE000835) (228 aa) fasta scores: E(): 1.6e-15, 32.33 38d in 201 aa
YP_001253003.1	Similar to Clostridium perfringens hypothetical protein Cpe1930 SWALL:Q8XJ31 (EMBL:AP003192) (256 aa) fasta scores: E(): 6.5e-24, 34.79 38d in 250 aa
YP_001253004.1	Similar to Staphylococcus aureus hypothetical protein sav0744 or sa0699 or mw0706 SWALL:Q99VN0 (EMBL:AP003360) (164 aa) fasta scores: E(): 2.8e-14,36.29 38d in 135 aa
YP_001253005.1	Similar to Clostridium tetani transcriptional regulatory protein ctc00684 SWALL:Q897P7 (EMBL:AE015938) (481 aa) fasta scores: E(): 5.3e-110, 62 38d in 479 aa
YP_001253006.1	Similar to Clostridium tetani lema-like protein LemA or ctc00358 SWALL:Q898T4 (EMBL:AE015937) (191 aa) fasta scores: E(): 3.8e-39, 59.57 38d in 188 aa
YP_001253007.1	Similar to Clostridium tetani protein ctc00359 SWALL:Q898T3 (EMBL:AE015937) (273 aa) fasta scores: E(): 1.1e-32, 47.1 38d in 276 aa
YP_001253008.1	Similar to Clostridium tetani protein ctc00359 SWALL:Q898T3 (EMBL:AE015937) (273 aa) fasta scores: E(): 3.6e-39, 52.55 38d in 274 aa
YP_001253009.1	Similar to Bacillus anthracis mutt/nudix family protein ba3685 SWALL:Q81Y72 (EMBL:AE017035) (147 aa) fasta scores: E(): 1.4e-06, 35.29 38d in 136 aa
YP_001253010.1	Similar to Clostridium perfringens hypothetical protein Cpe0713 SWALL:Q8XMH6 (EMBL:AP003187) (154 aa) fasta scores: E(): 3, 21.93 38d in 155 aa
YP_001253011.1	Similar to Thermotoga maritima hypothetical protein Tm0858 SWALL:Q9WZW2 (EMBL:AE001752) (168 aa) fasta scores: E(): 9.9e-15, 35.4 38d in 161 aa
YP_001253012.1	Similar to Thermoplasma volcanium hypothetical protein tv0916 tv0916 or tvg0944468 SWALL:Q97A94 (EMBL:AP000994) (245 aa) fasta scores: E(): 1.5e-05,27.95 38d in 186 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri ubiquinone/menaquinone biosynthesis methyltransferase ubie ubie or b3833 or z5355 or ecs4763 or sf3911 or s3843 SWALL:UBIE_ECOLI (SWALL:P27851) (251 aa) fasta scores: E(): 1.6e-05, 30 38d in 170 aa
YP_001253013.1	Similar to Bacillus cereus transcriptional regulator, cro/ci family bc2181 SWALL:Q81E15 (EMBL:AE017005) (75 aa) fasta scores: E(): 1.6e-16, 73.52 id in 68 aa
YP_001253014.1	Similar to Bacillus cereus hypothetical membrane spanning protein bc2987 SWALL:Q813G4 (EMBL:AE017007) (160 aa) fasta scores: E(): 0.00041, 30 38d in 170 aa
YP_001253016.1	Similar to Escherichia coli, and Escherichia coli O157:H7 nuclease sbccd subunit d sbcd or b0398 or z0496 or ecs0448 SWALL:SBCD_ECOLI (SWALL:P13457) (400 aa) fasta scores: E(): 4.8e-08, 27.7 38d in 397 aa, and to Bacillus subtilis exonuclease sbcd homolog sbcd or bsu10640 SWALL:SBCD_BACSU (SWALL:P23479) (391 aa) fasta scores: E(): 2.5e-17, 39.9 38d in 406 aa
YP_001253017.1	Similar to Escherichia coli exonuclease sbcc sbcc or rmua or b0397 SWALL:SBCC_ECOLI (SWALL:P13458) (1048 aa) fasta scores: E(): 8.6e-10, 21.48 38d in 1210 aa
YP_001253018.1	Similar to Bacillus subtilis ADP-ribose pyrophosphatase nudf or bsu23610 SWALL:ADPP_BACSU (SWALL:P54570) (185 aa) fasta scores: E(): 0.00014, 27.54 id in 167 aa, and to Homo sapiens ADP-sugar pyrophosphatase ysa1h nudt5 SWALL:NUD5_HUMAN (SWALL:Q9UKK9) (219 aa) fasta scores: E(): 2.2e-13, 35.91 id in 181 aa
YP_001253019.1	Similar to Clostridium tetani transporter ctc01333 SWALL:Q895E3 (EMBL:AE015940) (289 aa) fasta scores: E(): 6.5e-43, 38.21 38d in 280 aa
YP_001253020.1	Similar to Clostridium acetobutylicum hypothetical protein Cac3540 SWALL:Q97DD8 (EMBL:AE007850) (53 aa) fasta scores: E(): 1.8e-13, 60 38d in 50 aa
YP_001253021.1	Similar to Synechocystis sp. transcriptional repressor smtb homolog smtb or ziar or sll0792 SWALL:SMTB_SYNY3 (SWALL:Q55940) (132 aa) fasta scores: E(): 7.6e-17, 37.06 38d in 116 aa
YP_001253022.1	Similar to Synechocystis sp. zinc-transporting ATPase ZiaA or slr0798 SWALL:ATZN_SYNY3 (SWALL:Q59998) (721 aa) fasta scores: E(): 7.1e-108, 44.69 38d in 745 aa,and to Helicobacter pylori cadmium, zinc and cobalt transporting ATPase CadA or hp0791 SWALL:HMCT_HELPY (SWALL:Q59465) (686 aa) fasta scores: E(): 8.6e-88, 39.43 id in 738 aa
YP_001253024.1	Similar to Clostridium acetobutylicum hypothetical protein Cac1923 SWALL:Q97HT4 (EMBL:AE007698) (110 aa) fasta scores: E(): 0.00019, 36.27 38d in 102 aa
YP_001253025.1	Similar to Clostridium perfringens hypothetical protein Cpe0253 cpe0253 SWALL:Q8XNS9 (EMBL:AP003186) (67 aa) fasta scores: E(): 0.0044, 76.92 38d in 26 aa
YP_001253026.1	Similar to Bacillus halodurans hypothetical protein Bh1562 SWALL:Q9KCK9 (EMBL:AP001512) (268 aa) fasta scores: E(): 4.7e-46, 45.14 38d in 268 aa
YP_001253027.1	Similar to Clostridium perfringens probable phosphate starvation inducible protein cpe1665 SWALL:Q8XJT8 (EMBL:AP003191) (459 aa) fasta scores: E(): 2.2e-118, 69.71 38d in 459 aa
YP_001253028.1	Similar to Clostridium tetani protein ctc00791 SWALL:Q897E9 (EMBL:AE015938) (335 aa) fasta scores: E(): 1.1e-77, 64.47 38d in 335 aa
YP_001253029.1	Similar to Clostridium tetani protein ctc00792 SWALL:Q897E8 (EMBL:AE015938) (343 aa) fasta scores: E(): 1e-48, 40.81 38d in 343 aa
YP_001253030.1	Similar to Streptococcus iniae bacteriocin-like prepropeptide SagA SWALL:Q8GP18 (EMBL:AF465842) (54 aa) fasta scores: E(): 6.2e-06, 50 38d in 52 aa, and to Streptococcus pyogenes, Streptococcus pyogenes streptolysin S associated protein SagA or spy0738 or spym18_0799 or spym3_0480 or sps1374 SWALL:O69194 (EMBL:AF067723) (53 aa) fasta scores: E(): 0.00037, 42 38d in 50 aa
YP_001253031.1	Similar to Streptococcus equisimilis SagB SWALL:Q93SL4 (EMBL:AY033399) (316 aa) fasta scores: E(): 5.8e-45, 44.17 38d in 292 aa
YP_001253032.1	Similar to Streptococcus iniae SagC SWALL:Q8GP16 (EMBL:AF465842) (354 aa) fasta scores: E(): 2.6e-38,36.33 38d in 355 aa
YP_001253033.1	Similar to Streptococcus iniae SagD sagD SWALL:Q8GP15 (EMBL:AF465842) (453 aa) fasta scores: E(): 9.8e-91, 51.54 38d in 454 aa
YP_001253034.1	Similar to Streptococcus iniae SagE SWALL:Q8GP14 (EMBL:AF465842) (220 aa) fasta scores: E(): 1.9e-18,32.05 38d in 209 aa
YP_001253035.1	Similar to Streptococcus iniae SagF SWALL:Q8GP13 (EMBL:AF465842) (229 aa) fasta scores: E(): 0.15, 26 38d in 150 aa
YP_001253036.1	Similar to Streptococcus iniae SagG SWALL:Q8GP12 (EMBL:AF465842) (307 aa) fasta scores: E(): 2.7e-49,50.47 38d in 313 aa
YP_001253037.1	Similar to Streptococcus iniae SagH sagH SWALL:Q8GP11 (EMBL:AF465842) (375 aa) fasta scores: E(): 1e-37, 30.58 38d in 376 aa
YP_001253038.1	Similar to Streptococcus iniae SagI sagI SWALL:Q8GP10 (EMBL:AF465842) (372 aa) fasta scores: E(): 2.3e-37, 32.04 38d in 362 aa
YP_001253039.1	Similar to Clostridium tetani protein with metal dependent protease domain ctc00793 SWALL:Q897E7 (EMBL:AE015938) (213 aa) fasta scores: E(): 8.2e-48,59.33 38d in 209 aa
YP_001253041.1	Similar to Staphylococcus aureus arsenical pump membrane protein ArsB SWALL:ARSB_STAAU (SWALL:P30329) (429 aa) fasta scores: E(): 8.8e-19, 23.55 38d in 433 aa, and to Bacillus anthracis arsenical pump family protein ba5143 SWALL:Q81K62 (EMBL:AE017039) (444 aa) fasta scores: E(): 2.4e-82, 52.9 38d in 431 aa
YP_001253042.1	Similar to Clostridium tetani protein ctc00796 SWALL:Q897E4 (EMBL:AE015938) (324 aa) fasta scores: E(): 5.2e-28, 45.38 38d in 260 aa
YP_001253043.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_001253044.1	Similar to Clostridium perfringens hypothetical protein Cpe1164 cSWALL:Q8XL78 (EMBL:AP003189) (72 aa) fasta scores: E(): 0.006, 34.32 38d in 67 aa, and to Clostridium acetobutylicum uncharacterized protein,homolog of ywsa b.subtilis cac2598 SWALL:Q97FX7 (EMBL:AE007757) (76 aa) fasta scores: E(): 0.2, 28.98 38d in 69 aa
YP_001253045.1	antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein
YP_001253046.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001253071.1	This CDS is also similar to CBO0529, 62.162 identity (62.30238ngapped) in 444 aa overlap.
YP_001253072.1	This CDS is also similar to CBO0528, 62.162 identity (62.30238ngapped) in 444 aa overlap.
YP_001253076.1	Similar to the C-terminal region of Pseudomonas aeruginosa chromate transport protein ChrA SWALL:CHRA_PSEAE (SWALL:P14285) (416 aa) fasta scores: E(): 2e-08, 28.24 38d in 177 aa
YP_001253077.1	Similar to N-terminal region of Pseudomonas aeruginosa chromate transport protein ChrA SWALL:CHRA_PSEAE (SWALL:P14285) (416 aa) fasta scores: E(): 2e-07, 28.35 38d in 134 aa
YP_001253080.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_001253090.1	Similar to the N-terminal region of Borrelia burgdorferi hypothetical protein Bb0224 bb0224 SWALL:O51242 (EMBL:AE001132) (94 aa) fasta scores: E(): 6.9, 46.42 38d in 28 aa
YP_001253091.1	Similar to the C-terminal region of Bacillus anthracis hypothetical protein ba3885 SWALL:Q81WT3 (EMBL:AE017036) (118 aa) fasta scores: E(): 4.6, 31.25 38d in 32 aa
YP_001253093.1	Similar to the C-terminal region of Xestia c-nigrum granulosis virus orf42 SWALL:Q9PZ01 (EMBL:AF162221) (379 aa) fasta scores: E(): 0.85, 22.81 38d in 149 aa
YP_001253106.1	The N-terminal and C-terminal halves of this CDS are similar to Escherichia coli PotC and PotD,respectively. This indicate that this CDS resulted from a fusion between two adjacent CDSs.
YP_001253109.1	This CDS is similar to N-terminal region of Bradypodion setaroi NADH dehydrogenase subunit 2 and to C-terminal region of Clostridium tetani ABC transporter-associated permease. This small CDS could be a gene remnant.
YP_001253112.1	Similar to C-terminal region of Thermoplasma acidophilum protease synthase and sporulation negative regulatory protein ta0375 SWALL:Q9HL56 (EMBL:AL445064) (154 aa) fasta scores: E(): 8.9, 30 38d in 70 aa
YP_001253115.1	Similar to the C-terminal regions of various methionyl-tRNA synthetase such as Escherichia coli methionyl-tRNA synthetase MetG, and similar over the entire length of certain proteins such as Pyrococcus abyssi fragment of methionyl-tRNA synthetase pyrab04130 or pab0278 SWALL:Q9V1L4 (EMBL:AJ248284) (109 aa) fasta scores: E(): 6e-11, 43 38d in 100 aa
YP_001253139.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001253147.1	. Also similar to CBO0606 (69.816 38dentity in 381 aa overlap.)
YP_001253148.1	. Also similar to CBO0605 (69.816 38dentity in 381 aa overlap.)
YP_001253159.1	The C-terminal region of this CDS is similar to arsenical resistance genes such as Staphylococcus aureus arsenical resistance operon repressor ArsR SWALL:ARSR_STAAU (SWALL:P30338) (104 aa) fasta scores: E(): 0.0047, 38.27 38d in 81 aa, and its N-terminal region is similar to several including Plasmodium yoelii yoelii bir1 protein py02660 SWALL:EAA22137 (EMBL:AABL01000733) (346 aa) fasta scores: E(): 1.2,23.21 38d in 224 aa, and Bacillus subtilis RNA polymerase sigma-G factor SigG or SpoIIIG or bsu15330 SWALL:RPSG_BACSU (SWALL:P19940) (260 aa) fasta scores: E(): 9.2, 25 38d in 168 aa
YP_001253171.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_001253194.1	Also similar to CBO2085 (71.21 38d)
YP_001253215.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001253222.1	Similar to the C-terminal region of Clostridium tetani hypothetical protein ctp44 SWALL:Q899X1 (EMBL:AF528097) (306 aa) fasta scores: E(): 0.00017,37.37 38d in 99 aa
YP_001253235.1	Similar to the C-terminal region of Porphyromonas gingivalis mate efflux family protein pg1446 SWALL:Q7MUQ1 (EMBL:AE017177) (439 aa) fasta scores: E(): 0.22, 43.24 id in 37 aa
YP_001253237.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_001253238.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_001253239.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein
YP_001253240.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein
YP_001253243.1	Weakly similar to N-terminal region of Spiroplasma citri chromosomal replication initiator protein DnaA dnaA SWALL:DNAA_SPICI (SWALL:P34028) (450 aa) fasta scores: E(): 7.2, 21.14 38d in 350 aa, and to the entire length of Plasmodium yoelii yoelii arabidopsis thaliana brahma ortholog py06648 SWALL:EAA18896 (EMBL:AABL01002276) (632 aa) fasta scores: E(): 2.1, 21.99 38d in 623 aa
YP_001253246.1	Similar to Clostridium acetobutylicum hypothetical protein Cac1490 cac1490 SWALL:Q97IZ6 (EMBL:AE007660) (57 aa) fasta scores: E(): 1.5e-07, 56.25 38d in 48 aa, and to the C-terminal region of Lumpy skin disease virus early transcription factor small subunit lw017 SWALL:Q91T35 (EMBL:AF336128) (176 aa) fasta scores: E(): 8.5, 25.8 38d in 62 aa
YP_001253254.1	Also similar to CBO2045 (67.1 38d)
YP_001253263.1	Similar to C-terminal region of Bacillus subtilis transcription regulator yobV SWALL:O34920 (EMBL:AF027868) (313 aa) fasta scores: E(): 6.4, 44.44 38d in 36 aa
YP_001253266.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_001253287.1	Similar to an internal region of Bacillus cereus enterotoxin SWALL:Q9RMN6 (EMBL:AF192766) (419 aa) fasta scores: E(): 0.0082, 31.31 38d in 99 aa, and to C-terminal region of Bacillus anthracis prophage lambdaba01,N-acetylmuramoyl-L-alanine amidase, family 2 ba3767 SWALL:Q81XZ5 (EMBL:AE017035) (310 aa) fasta scores: E(): 1.2, 29.89 38d in 97 aa
YP_001253302.1	Highly similar to downstream CDS CBO0767 (89.9 id)
YP_001253303.1	Highly similar to upstream CDS CBO0766 (89.9 38d)
YP_001253308.1	This CDS is also similar to CBO0451 (52.308 identity in 260 aa overlap)
YP_001253326.1	Also similar to CBO1236 (31.7 38d.).
YP_001253337.1	previously sequenced in Clostridium botulinum as Ha70 SWALL:Q8KHU9 (EMBL:AF461538) (626 aa) fasta scores: E(): 0, 100 38d in 626 aa
YP_001253338.1	Previously sequenced in Clostridium as botulinum Ha17 or Ha-17 SWALL:Q45878 (EMBL:L42537) (146 aa) fasta scores: E(): 4e-58, 100 38d in 146 aa
YP_001253339.1	Previously sequenced in Clostridium botulinum as Ha-33 protein Ha-33 or Ha33 SWALL:Q45871 (EMBL:X79104) (293 aa) fasta scores: E(): 4.2e-113, 100 38d in 293 aa
YP_001253340.1	Previously sequenced as Clostridium botulinum hypothetical protein p-21 or botR SWALL:Q57176 (EMBL:X79104) (178 aa) fasta scores: E(): 9.6e-61, 100 38d in 178 aa
YP_001253341.1	Previously sequenced in Clostridium botulinum as type A progenitor toxin nontoxic-nonha Ant or NtnH SWALL:Q45914 (EMBL:D67030) (1193 aa) fasta scores: E(): 0,100 38d in 1193 aa
YP_001253342.1	Similar to Clostridium botulinum botulinum neurotoxin type A precursor BotA or Bna or Atx SWALL:BXA1_CLOBO (SWALL:P10845) (1295 aa) fasta scores: E(): 0, 99.92 38d in 1295 aa
YP_001253346.1	This CDS is also similar to CBO0814 (78.837 identity in 430 aa overlap).; Highly similar to adjacent CDS, CBO0814, (78.8 id)
YP_001253347.1	This CDS is also similar to CBO0813 (78.837 identity in 430 aa overlap).; Highly similar to adjacent CDS, CBO0813, (78.8 id)
YP_001253348.1	Similar over its C-terminal region to several including Oceanobacillus iheyensis oligopeptide ABC transporter oligopeptide-binding protein ob2775 SWALL:Q8EMR6 (EMBL:AP004602) (524 aa) fasta scores: E(): 1.8e-24, 25.29 38d in 518 aa
YP_001253350.1	Similar to the N-terminal region of Escherichia coli ferrous iron transport protein b feob or b3409 SWALL:FEOB_ECOLI (SWALL:P33650) (773 aa) fasta scores: E(): 8.3e-22, 41.2 38d in 216 aa
YP_001253351.1	Similar to the C-terminal region of Escherichia coli ferrous iron transport protein b feob or b3409 SWALL:FEOB_ECOLI (SWALL:P33650) (773 aa) fasta scores: E(): 1.4e-13, 25.42 38d in 476 aa
YP_001253354.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_001253362.1	Similar to internal regions of several including Clostridium perfringens hypothetical protein Cpe1732 cpe1732 SWALL:Q8XJM4 (EMBL:AP003191) (548 aa) fasta scores: E(): 0.00013, 35.06 38d in 77 aa
YP_001253373.1	This CDS is also similar to CBO0849 (93.333 identity in 270 aa overlap)
YP_001253377.1	Highly similar to CBO2182 (98.2 38d)
YP_001253382.1	This CDS is also similar to CBO0840 (93.333 identity in 270 aa overlap)
YP_001253404.1	Similar to The C-terminal regions of several regulators including Escherichia coli, and Escherichia coli O157:H7 regulatory protein nsr nsr or b2163 or z3420 or ecs3055 SWALL:NSR_ECOLI (SWALL:P33023) (219 aa) fasta scores: E(): 0.029, 28.44 38d in 116 aa, and to Bacillus cereus catabolite gene activator bc3449 SWALL:Q81AV5 (EMBL:AE017009) (230 aa) fasta scores: E(): 1.3e-09,34.95 38d in 123 aa
YP_001253417.1	Also similar to CBO1459 (62.14 38d)
YP_001253432.1	.; Highly similar to CBO1594 (85.5 38d), CBO2273 (82.3 38d) and CBO2267 (85.5 0d)
YP_001253433.1	Similar to internal regions of several including Fusobacterium nucleatum subsp. vincentii ATCC 49256 acetyltransferase fnv1635 SWALL:EAA24765 (EMBL:AABF01000017) (173 aa) fasta scores: E(): 1.1e-07,46.15 38d in 65 aa
YP_001253442.1	Similar over its C-terminal region to several LexA repressors including Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri lexa repressor SWALL:LEXA_ECOLI (SWALL:P03033) (202 aa) fasta scores: E(): 2.5e-07, 31.78 38d in 129 aa
YP_001253443.1	catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP
YP_001253446.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_001253447.1	CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
YP_001253449.1	catalyzes the ATP-dependent transport of cobalt
YP_001253452.1	catalyzes the formation of siroheme from precorrin-2
YP_001253453.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_001253456.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_001253457.1	responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid
YP_001253458.1	catalyzes the interconversion of precorrin-8X and cobyrinic acid
YP_001253463.1	Similar to N-terminal regions of many MerR-family transcriptional regulators including Clostridium acetobutylicum transcriptional regulator, merr family cap0178 SWALL:Q97TD4 (EMBL:AE001438) (123 aa) fasta scores: E(): 0.00041, 36.97 38d in 119 aa
YP_001253469.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_001253480.1	catalyzes the formation of precorrin-3A from precorrin-2
YP_001253484.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_001253488.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_001253492.1	with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide
YP_001253498.1	Similar to the C-terminal region of Methanobacterium thermoautotrophicum hypothetical protein Mth922 mth922 SWALL:O27005 (EMBL:AE000867) (111 aa) fasta scores: E(): 1.1e-09, 41.74 38d in 103 aa
YP_001253508.1	in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone
YP_001253509.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_001253510.1	Similar to the C-terminal region of Clostridium tetani hypothetical protein ctp46 SWALL:Q899W9 (EMBL:AF528097) (146 aa) fasta scores: E(): 1.7e-10,59.64 38d in 57 aa
YP_001253514.1	Similar to the C-terminal region of Bacteroides thetaiotaomicron hypothetical protein bt2376 SWALL:Q8A566 (EMBL:AE016935) (178 aa) fasta scores: E(): 0.00026,32.25 38d in 62 aa
YP_001253522.1	catalyzes the formation of inosine from adenosine
YP_001253523.1	This CDS is also similar to CBO0993 (37.812 identity in 722 aa overlap) and to CBO2927 (34.488 identity in 722 aa overlap).
YP_001253524.1	This CDS is also similar to CBO0992 (37.812 identity in 722 aa overlap) and to CBO2927 (34.669 identity in 724 aa overlap).
YP_001253545.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001253550.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001253603.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_001253604.1	associated with arginine deiminase pathway genes; probably functions in arginine catabolism
YP_001253618.1	Similar to N-terminal region of Pediococcus pentosaceus OrfQ and to the C-terminal region of Pseudomonas phage phiKZ
YP_001253623.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_001253624.1	Also similar to CBO0226 (66.26 38d)
YP_001253629.1	This CDS is also similar to CBO1101 (77.042 identity in 453 aa overlap).
YP_001253630.1	This CDS is also similar to CBO1100 (77.042 identity in 453 aa overlap).
YP_001253658.1	similarity to activators of 2-hydroxyacyl-CoA dehydratases is confined to the N-terminal region; Also similar to CBO3170 (62.2 38d).
YP_001253667.1	Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine
YP_001253686.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_001253693.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001253705.1	Also similar to CBO0205 (53.5 38d).
YP_001253710.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_001253717.1	Also similar to CBO2760 (65.74 38d)
YP_001253723.1	Similar to the C-terminal region of several transporters.
YP_001253728.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_001253734.1	. CDS contains imperfect repeat regions rich in lysine, glutamic acid and asparagine.
YP_001253760.1	Also similar to CBO0789 (31.7 38d.).
YP_001253767.1	Similar over the entire length of Clostridium perfringens stage III sporulation protein AC, spoIIIAC,and Staphylococcus epidermidis hypothetical protein SE2234. It is also similar to the N-terminus of Streptococcus thermophilus bacteriophage Sfi21 Orf203 protein.
YP_001253783.1	Selenoprotein. This CDS contains an opal stop codon that is read-through as selenocysteine.
YP_001253786.1	GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin
YP_001253789.1	responsible for recognizing base lesions in the genome and initiating base excision DNA repair
YP_001253791.1	phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway
YP_001253792.1	isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway
YP_001253807.1	molybdenum cofactor-binding protein; participates in purine salvage
YP_001253808.1	FAD-binding subunit; with XdhA and XdhC participates in purine salvage
YP_001253811.1	decatenates replicating daughter chromosomes
YP_001253814.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_001253822.1	Highly similar to CBO2803 (89.0 38d) and CBO3279 (89.2 38d)
YP_001253838.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_001253863.1	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway
YP_001253872.1	. High content of Gln residues
YP_001253883.1	limited similarity to the database matches mentioned
YP_001253888.1	this CDS is shorter at the C-terminus relative to most database matches
YP_001253892.1	member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions
YP_001253903.1	Also similar to CBO0282 (63.9 38d.) and CBO1772 (50.7 38d.).
YP_001253906.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal
YP_001253927.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_001253937.1	Highly similar to the prophage encoded CBO1747 (95.3 38d)
YP_001253940.1	Also similar to prophage encoded CBO1751, CBO1653,CBO3016 and CBO2325.
YP_001253945.1	Similarity to the Bacillus subtilis cell division protein FtsA is limited to the N-terminal region.
YP_001253949.1	Also similar to CBO3536 and CBO1435
YP_001253950.1	Also similar to CBO1434 and CBO3536
YP_001253955.1	Also similar to CBO1440 (pseudogene), CBO1443,CBO1444, CBO1445, CBO1446
YP_001253956.1	Also similar to CBO1440 (pseudogene), CBO1442,CBO1444, CBO1445, CBO1446
YP_001253957.1	Also similar to CBO1440 (pseudogene), CBO1442,CBO1443, CBO1445, CBO1446
YP_001253958.1	Also similar to CBO1440 (pseudogene), CBO1442,CBO1443, CBO1444, CBO1446
YP_001253959.1	Also similar to CBO1440 (pseudogene), CBO1442,CBO1443, CBO1444, CBO1445
YP_001253961.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_001253962.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_001253964.1	Also similar to CBO1589 (34.9 38d.).
YP_001253965.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_001253966.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_001253970.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_001253972.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_001253975.1	Also similar to CBO1464.
YP_001253977.1	Also similar to CBO1462.
YP_001253984.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_001253985.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate
YP_001253986.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_001253988.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_001253990.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_001254001.1	Also similar to CBO1498 (40.6 38d.).
YP_001254007.1	catalyze the formation of methyl-coenzyme M from methylcobalamin and coenzyme M
YP_001254010.1	Also similar to CBO1489 (40.6 38d.).
YP_001254016.1	catalyzes the formation of asparagine from aspartate and ammonia
YP_001254018.1	This CDS is shorter at the C-terminus relative to the database matches.
YP_001254042.1	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated
YP_001254047.1	similar to the C-terminal region of many calcium-transporting ATPase including Clostridium perfringens. It is also similar over the full length of Bacillus hypothetical protein.
YP_001254064.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_001254070.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_001254072.1	May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_001254073.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_001254074.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_001254075.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_001254076.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_001254077.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_001254078.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_001254079.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_001254080.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_001254081.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_001254094.1	Also similar to CBO0065 (57.03 38d).
YP_001254096.1	Also similar to CBO1450 (34.9 38d.).
YP_001254099.1	; Highly similar to CBO0900 (85.5 38d), CBO2273 (85.5 38d) and CBO2267 (93.7 0d)
YP_001254113.1	. Contains a repetitive region: KEEVQYENIED(T/D)G(L/F)
YP_001254120.1	Weak similarity to the listed RNA polymerase sigma factors
YP_001254127.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001254140.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_001254141.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_001254142.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive
YP_001254143.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_001254146.1	Also similar to CBO3305 (67.698 38d. in 291 aa overlap).
YP_001254147.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_001254153.1	Also similar to the prophage encoded CDS, CBO1752,(91.892 38d. in 74 aa overlap).
YP_001254154.1	; Similar to the prophage encoded CDS, CBO1755,(79.7 38d. in 74 aa overlap).
YP_001254155.1	Also similar to CBO2229 (57.84 38d)
YP_001254158.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_001254180.1	Similar to the C-terminal region of Frog adenovirus 1 33k protein SWALL:Q9IIH1 (EMBL:AF224336) (129 aa) fasta scores: E(): 6.5, 42.85 38d in 28 aa
YP_001254181.1	Similar to N-terminal region of Bacteriophage 434 repressor protein CI cI SWALL:RPC1_BP434 (SWALL:P16117) (94 aa) fasta scores: E(): 1.2, 30.35 38d in 56 aa, and to Listeria monocytogenes LcmR protein lcmR SWALL:Q9EUV6 (EMBL:AJ302030) (68 aa) fasta scores: E(): 1.5, 33.33 38d in 54 aa
YP_001254225.1	Similar to N-terminal region of Bacillus cereus phage protein bc1880 SWALL:Q81ET4 (EMBL:AE017003) (313 aa) fasta scores: E(): 0.07, 31.95 38d in 97 aa
YP_001254247.1	Similar to C-terminal region of Chromobacterium violaceum probable rhs family protein cv1429 SWALL:AAQ59104 (EMBL:AE016914) (409 aa) fasta scores: E(): 0.069, 38.71 38d in 62 aa; Highly similar to CBO1421 (95.3 38d)
YP_001254251.1	Also similar to CBO1653 (81.6 38d), CBO2325 (86.1 id.), CBO3016 (50.0 38d.)
YP_001254252.1	.; Also similar to CBO1654 (91.892 38d. in 74 aa overlap) and to CBO1651 (39.39 38d)
YP_001254256.1	.; Similar to CBO1655 (79.7 38d. in 74 aa overlap).
YP_001254264.1	This CDS is also similar to CBO1992 (35.644 identity in 303 aa overlap).
YP_001254273.1	Also similar to CBO0282 (49.18 38d.) and CBO1387 (50.7 38d.).
YP_001254283.1	Partially similar to Listeria monocytogenes internalin a precursor inla or lmo0433 SWALL:INLA_LISMO (SWALL:P25146) (800 aa) fasta scores: E(): 5.4e-17, 29.05 id in 537 aa
YP_001254293.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_001254295.1	Represses a number of genes involved in the response to DNA damage
YP_001254298.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_001254299.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_001254300.1	This protein performs the mismatch recognition step during the DNA repair process
YP_001254301.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_001254304.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001254307.1	these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_001254308.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_001254330.1	Similar to the C-terminal region of several oxidoreductases such as Eubacterium acidaminophilum HymA protein.
YP_001254331.1	This CDS is also similar to CBO1832 (49.914 38d. in 579 aa overlap)
YP_001254332.1	Similar to the C-terminal region of stage II sporulation protein E from various organisms including Bacillus subtilis stage II sporulation protein eE SpoIIE or spoiih or bsu00640 SWALL:SP2E_BACSU (SWALL:P37475) (827 aa) fasta scores: E(): 0.0013, 27.01 38d in 211 aa
YP_001254333.1	This CDS is also similar to CBO1830 (49.914 38d. in 579 aa overlap)
YP_001254345.1	.; Highly similar to the adjacent CDS, CBO1845 (96.49 id)
YP_001254346.1	.; Highly similar to the adjacent CDS, CBO1844 (96.49 id)
YP_001254357.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer
YP_001254358.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB
YP_001254365.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_001254366.1	This CDS is also similar to CBO1793 (27.541 identity in 305 aa overlap)
YP_001254371.1	Similar to C-terminal region of Clostridium tetani N-acetylmuramoyl-L-alanine amidase-like protein ctc01112 SWALL:Q895Z8 (EMBL:AE015939) (266 aa) fasta scores: E(): 1.3e-27, 71.42 38d in 112 aa
YP_001254380.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_001254383.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_001254386.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_001254387.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_001254388.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_001254396.1	necessary for complete engulfment of forespore
YP_001254399.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_001254400.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_001254414.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_001254416.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_001254426.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_001254442.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_001254451.1	Similar to N-terminal region of Thermoanaerobacter tengcongensis acetyltransferases, including N-acetylases of ribosomal proteins riml or tte1540 SWALL:Q8R9Q9 (EMBL:AE013110) (185 aa) fasta scores: E(): 1.6, 35.71 38d in 56 aa
YP_001254460.1	Similar to internal region of interlanin from various organisms including Listeria monocytogenes internalin G inlG. It is also similar to CBO1965 (76.205 id. in 332 aa overlap); also similar to CBO1965 (76.2 38d)
YP_001254461.1	also similar to CBO1966 (79.2 38d)
YP_001254468.1	Similar to internal region of interlanin from various organisms including Listeria monocytogenes internalin G inlG. It is also similar to CBO1957 (76.205 id. in 332 aa overlap); also similar to CBO1957 (76.2 38d)
YP_001254469.1	also similar to CBO1958 (79.2 38d)
YP_001254477.1	This CDS is also similar to CBO1976 (65.374 38d. in 361 aa overlap), CBO1978 (49.5 38d. in 361 aa overlap),CBO2796 (35.6 38d. in 365 aa overlap) and to CBO2300 (5.556 38d. in 360 aa overlap).
YP_001254479.1	This CDS is also similar to CBO1974 (65.374 38d. in 361 aa overlap), CBO1978 (50.413 38d. in 363 aa overlap),CBO2796 (36.957 38d. in 368 aa overlap) and to CBO2300 (32.682 38d. in 358 aa overlap).
YP_001254481.1	This CDS is also similar to CBO1976 (50.4 38d. in 363 aa overlap), CBO1974 (49.58 38d. in 361 aa overlap),CBO2300 (36.827 38d. in 353 aa overlap) and to CBO2796 (37.7 38d. in 366 aa overlap)
YP_001254487.1	the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli
YP_001254488.1	molecular chaperone
YP_001254495.1	This CDS is also similar to CBO1763 (35.644 identity in 303 aa overlap).
YP_001254496.1	catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway
YP_001254502.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_001254508.1	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
YP_001254513.1	Similar to N-terminal region of several ATP-dependent RNA helicases.
YP_001254517.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001254530.1	This CDS is also similar to the adjacent CDS,CBO2029, (77.828 38dentity in 442 aa overlap)
YP_001254531.1	This CDS is also similar to the adjacent CDS,CBO2028, (77.828 38dentity in 442 aa overlap)
YP_001254545.1	in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever
YP_001254547.1	Also similar to CBO0713 (67.1 38d)
YP_001254548.1	Also similar to the downstream CDS CBO2051 (56.7 id).
YP_001254549.1	Also similar to the downstream CDS CBO2050 (56.7 id).
YP_001254555.1	no significant database hits
YP_001254556.1	Also similar to the downstream CDS CBO2059 (87.6 id) and
YP_001254557.1	Also similar to the upstream CDS CBO2058 (87.6 38d) and
YP_001254562.1	Similar, but extended at the C-terminus, to Bacillus anthracis hypothetical protein ba2131 SWALL:Q81RB8 (EMBL:AE017030) (156 aa) fasta scores: E(): 2.1e-17, 41.4 38d in 157 aa, and to full-length Bacillus cereus ABC transporter permease bc4218 SWALL:Q818N1 (EMBL:AE017011) (207 aa) fasta scores: E(): 7.2e-05, 22.83 38d in 219 aa. CDS overlaps 7 nt at the N-terminus with CBO2065
YP_001254563.1	CDS overlaps 7 nt at the C-terminus with CBO2064
YP_001254569.1	Catalyzes the deamination of cytosine to uracil and ammonia
YP_001254571.1	no significant database hits
YP_001254573.1	no significant database hits
YP_001254578.1	no significant database hits
YP_001254580.1	no significant database hits
YP_001254581.1	CDS is truncated 37 residues at the C-terminus relative to its closest fasta match
YP_001254582.1	Also similar to CBO0653 (71.21 38d)
YP_001254584.1	no significant database hits
YP_001254585.1	N-terminus is similar to the N-terminus of Clostridium tetani hypothetical protein ctc01935 SWALL:Q892Z7 (EMBL:AE015942) (181 aa) fasta scores: E(): 3.6e-05, 80.76 38d in 26 aa
YP_001254588.1	no significant database hits
YP_001254589.1	no significant database hits
YP_001254590.1	C-terminus is similar to the N-terminus of Vibrio vulnificus hypothetical protein Vv1889 SWALL:Q7MKB6 (EMBL:AP005337) (293 aa) fasta scores: E(): 8.6e-26,53.28 38d in 152 aa
YP_001254591.1	no significant database hits
YP_001254592.1	no significant database hits
YP_001254593.1	no significant database hits
YP_001254594.1	no significant database hits
YP_001254601.1	Codons 380 to 501 are similar to codons 115 to 235 of Streptococcus equi immunoreactive protein Se117 SWALL:Q8GLG3 (EMBL:AY137523) (706 aa) fasta scores: E(): 3e-05, 31.14 38d in 122 aa
YP_001254625.1	Similar to the C-terminus from codon 90 of Bacillus cereus hypothetical protein bc2817 SWALL:Q81CF2 (EMBL:AE017007) (262 aa) fasta scores: E(): 1.9e-31,52.02 38d in 173 aa. Possible gene remnant
YP_001254631.1	Codons 498 to 620 are similar to the N-terminus to codon 124 of Methanobacterium thermoautotrophicum protein mth1478 SWALL:O27522 (EMBL:AE000908) (154 aa) fasta scores: E(): 0.0068, 26.82 38d in 123 aa
YP_001254634.1	CDS overlaps CBO2138 8 nt at the N-terminus
YP_001254635.1	N-terminus to codon 245 is similar to Clostridium tetani hypothetical protein ctc00646 SWALL:Q897T1 (EMBL:AE015938) (234 aa) fasta scores: E(): 0.023, 21.75 id in 216 aa, and the C-terminus from codon 245 is similar to Thermoanaerobacter tengcongensis aminopeptidase N PepN or tte2694 SWALL:Q8R6U0 (EMBL:AE013209) (479 aa) fasta scores: E(): 0.0027, 21.49 38d in 507 aa. CDS overlaps CBO2137 8 nt at the C-terminus
YP_001254638.1	FAD/NAD(P)-binding domain
YP_001254643.1	CDS overlaps 20 nt at the N-terminus with CBO2147
YP_001254644.1	CDS overlaps 20 nt at the C-terminus with CBO2146
YP_001254647.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_001254650.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_001254651.1	Poor database matches. Similar to the C-terminal region of Fusobacterium nucleatum subsp. vincentii ATCC 49256 hypothetical membrane spanning protein FNV1140 SWALL:EAA24128 (EMBL:AABF01000053) (383 aa) fasta scores: E(): 0.47, 32.63 38d in 144 aa
YP_001254652.1	. Contains coiled-coiled domain, residues 96 to 165
YP_001254654.1	Weakly similar to the N-terminal region of Clostridium perfringens probable amino acid ABC transporter cpe2093 SWALL:Q8XIM2 (EMBL:AP003192) (502 aa) fasta scores: E(): 3.1, 26.22 38d in 164 aa
YP_001254659.1	N-terminal region is similar to Escherichia coli,Escherichia coli O6, and Escherichia coli O157:H7 regulatory protein SoxS or b4062 or c5053 or z5661 or ecs5044 SWALL:SOXS_ECOLI (SWALL:P22539) (106 aa) fasta scores: E(): 7.2e-08, 32.07 38d in 106 aa. Full length CDS is similar to Clostridium tetani transcriptional regulatory protein ctc01432 SWALL:Q894V2 (EMBL:AE015941) (295 aa) fasta scores: E(): 1.9e-78, 64.4 38d in 295 aa
YP_001254660.1	Similar to the N-terminal region of Bacillus cereus hypothetical protein bc2906 SWALL:Q81C73 (EMBL:AE017007) (197 aa) fasta scores: E(): 1.3e-05, 30.28 38d in 175 aa
YP_001254661.1	This enzyme was purified from C. sporogenes and its N-terminus sequenced (Dickert et al. 2000 Eur. J. Biochem. 267, 3874-3884.
YP_001254666.1	Weakly similar to Porphyromonas gingivalis CRISPR-associated protein, TM1791 family PG1983 SWALL:AAQ66956 (EMBL:AE017178) (253 aa) fasta scores: E(): 3.4e-08, 34.85 38d in 307 aa
YP_001254670.1	Poor database matches. C-terminal region is weakly similar to the N-terminus of Archaeoglobus fulgidus hypothetical protein Af1867 SWALL:O28412 (EMBL:AE000974) (1004 aa) fasta scores: E(): 1.1e-05, 25.3 38d in 486 aa
YP_001254671.1	Poor database matches. Weakly similar to Porphyromonas gingivalis hypothetical protein PG1988 SWALL:AAQ66961 (EMBL:AE017178) (480 aa) fasta scores: E(): 0.076, 25.52 38d in 474 aa
YP_001254675.1	Doubtful CDS.
YP_001254676.1	Similar to Clostridium tetani protein CTC01470 SWALL:Q894R5 (EMBL:AE015941) (528 aa) fasta scores: E(): 2.2e-101, 79.85 38d in 551 aa. CDS contains additional internal amino acids relative to other proteins, residues 189 to 211
YP_001254677.1	Highly similar to CBO0844 (98.2 38d)
YP_001254680.1	Similar to the N-terminal region of Clostridium perfringens hypothetical protein CPE2586 SWALL:Q8XH99 (EMBL:AP003194) (262 aa) fasta scores: E(): 5.5e-26, 53.1 id in 145 aa. Possible gene remnant
YP_001254681.1	N-terminus is similar to the N-terminal region of Clostridium perfringens hypothetical protein CPE0727 SWALL:Q8XMG2 (EMBL:AP003187) (268 aa) fasta scores: E(): 2.8e-10, 65.15 38d in 66 aa. Possible gene remnant
YP_001254682.1	C-terminus is similar to the C-terminal region of Escherichia coli acetyl esterase Aes or b0476 SWALL:AES_ECOLI (SWALL:P23872) (319 aa) fasta scores: E(): 9.8e-14, 26.78 38d in 280 aa
YP_001254688.1	CDS is extended at the C-terminus in comparison to similar proteins. N-terminal region is similar to Pyrococcus horikoshii hypothetical protein PH0137 SWALL:O57877 (EMBL:AP000001) (378 aa) fasta scores: E(): 6.4e-17, 26.5 38d in 381 aa
YP_001254693.1	Similar to Acidaminococcus fermentans (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit HgdA SWALL:HGDA_ACIFE (SWALL:P11569) (476 aa) fasta scores: E(): 1e-53, 39.91 38d in 471 aa. CDS contains internal deletion in comparison to the A. fermentans protein. Full length CDS is similar to Clostridium sporogenes r-phenyllactate dehydratase medium subunit FldB SWALL:Q93AL9 (EMBL:AF420489) (407 aa) fasta scores: E(): 1.7e-84, 51.47 38d in 408 aa
YP_001254694.1	this gene from C. difficile was cloned,overexpressed in E. coli, and characterized as 2-hydroxyisocaproate CoA-transferase, a class III enzyme (Kim et al. 2004. FEMS Microbiol. Rev. 28, 455-468)
YP_001254697.1	Similar over its N-terminal region to small subunits of 2-hydroxyacyl-CoA dehydratases (hadC, HgdB and FldC), and over its C-terminal region to activators of 2-hydroxyacyl-CoA dehydratases (HadI, hgdC and FldI). Possible bifunctional fusion protein
YP_001254702.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_001254710.1	to the full length CDS. N-terminal region is similar to Clostridium tetani protein CTC01609 SWALL:Q894D9 (EMBL:AE015941) (307 aa) fasta scores: E(): 3.3e-70, 62.58 38d in 310 aa. C-terminal region is similar to Bacteroides thetaiotaomicron hypothetical protein BT2193 SWALL:Q8A5P5 (EMBL:AE016935) (557 aa) fasta scores: E(): 1.3e-47,32.73 38d in 498 aa. Possible bifunctional protein
YP_001254714.1	Similar to the C-terminal region of Escherichia coli, and Escherichia coli O6 hydrogenase isoenzymes nickel incorporation protein HypB or b2727 or c3287 SWALL:HYPB_ECOLI (SWALL:P24190) (290 aa) fasta scores: E(): 3e-25, 42.99 38d in 207 aa. Similar to the full length Thermoanaerobacter tengcongensis Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase TTE0130 SWALL:Q8RDB1 (EMBL:AE012986) (218 aa) fasta scores: E(): 5.2e-25,44.66 38d in 206 aa
YP_001254721.1	With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.
YP_001254722.1	to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa
YP_001254723.1	Also similar to CBO1656 (57.84 38d)
YP_001254729.1	Weakly similar to the C-terminal region of Rattus norvegicus D-beta-hydroxybutyrate dehydrogenase,mitochondrial precursor BDH SWALL:BDH_RAT (SWALL:P29147) (344 aa) fasta scores: E(): 3.1e-09, 25.65 38d in 269 aa. Similar to the full length Pseudomonas aeruginosa probable short-chain dehydrogenase PA1330 SWALL:Q9I414 (EMBL:AE004562) (259 aa) fasta scores: E(): 5.4e-22,33.85 38d in 254 aa
YP_001254745.1	Similar to Enterococcus faecalis hypothetical protein EF2778 SWALL:Q830K3 (EMBL:AE016955) (176 aa) fasta scores: E(): 1.1e-25, 46.62 38d in 178 aa, and to Streptococcus pneumoniae domain protein SP0723 SWALL:Q97RS0 (EMBL:AE007380) (174 aa) fasta scores: E(): 1.1e-22, 44.57 38d in 166 aa. CDS is extended at the C-terminus in comparison to orthologues. CDS feature contains an long overlap with the downstream CDS (CBO2253). Possible frameshift mutation after codon 158
YP_001254749.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_001254755.1	Similar to an internal region of Homo sapiens xaa-Pro aminopeptidase 2 precursor XPNPEP2 SWALL:XPP2_HUMAN (SWALL:O43895) (674 aa) fasta scores: E(): 1.1e-58, 31.58 38d in 611 aa. Similar to full length Clostridium perfringens probable aminopeptidase CPE0872 SWALL:Q8XM18 (EMBL:AP003188) (591 aa) fasta scores: E(): 1.8e-101, 45.22 38d in 597 aa
YP_001254759.1	Highly similar to CBO1594 (85.5 38d), CBO0900 (85.5 38d) and CBO2273 (82.3 0d).
YP_001254761.1	. Doubtful CDS, poor translational start site
YP_001254762.1	N-terminus is similar to the N-terminal region of Clostridium tetani iron-sulfur flavoprotein CTC01006 SWALL:Q896J7 (EMBL:AE015939) (185 aa) fasta scores: E(): 2e-12, 44.18 38d in 129 aa. Weakly similar to the full length Escherichia coli NAD(P)H oxidoreductase b0901 SWALL:YCAK_ECOLI (SWALL:P43340) (196 aa) fasta scores: E(): 0.008, 22.34 38d in 188 aa
YP_001254763.1	Doubtful CDS.
YP_001254765.1	Similar to the N-terminal region of Bacillus subtilis hypothetical protein YmaF or bsu17320 SWALL:YMAF_BACSU (SWALL:O31794) (137 aa) fasta scores: E(): 0.0051, 30.3 38d in 99 aa; Highly similar to CBO0900 (82.3 38d), CBO1594 (85.5 38d) and CBO12267 (89.9 0d)
YP_001254766.1	Similar to Clostridium acetobutylicum predicted flavodoxin oxidoreductase CAC1860 SWALL:Q97HZ6 (EMBL:AE007694) (328 aa) fasta scores: E(): 8.3e-70,54.87 38d in 328 aa. C-terminal region is weakly similar to Bacillus subtilis dihydroorotate dehydrogenase electron transfer subunit PyrK or PyrZ or BSU15530 SWALL:PYRK_BACSU (SWALL:P25983) (256 aa) fasta scores: E(): 1.4e-06, 24.47 id in 237 aa
YP_001254768.1	this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress
YP_001254769.1	Mn/Fe
YP_001254773.1	C-terminal region is weakly similar to Bacillus licheniformis bacitracin transport permease BcrB SWALL:BCRB_BACLI (SWALL:P42333) (208 aa) fasta scores: E(): 4.2, 20.63 38d in 189 aa. Full length CDS is similar to Clostridium tetani membrane spanning protein CTC01802 SWALL:Q893L6 (EMBL:AE015942) (243 aa) fasta scores: E(): 2.6e-08, 21.77 38d in 248 aa
YP_001254783.1	involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links
YP_001254785.1	C-terminal region is similar to Bacillus megaterium glucose 1-dehydrogenase III GdhIII SWALL:DHG3_BACME (SWALL:P39484) (261 aa) fasta scores: E(): 2.9e-23, 34.41 id in 247 aa. Full length CDS is similar to Clostridium acetobutylicum predicted dehydrogenase of short-chain alcohol dehydrogenase, ortholog of YhdF B.subtilis CAC1423 SWALL:Q97J63 (EMBL:AE007653) (299 aa) fasta scores: E(): 1.8e-76, 68.7 38d in 294 aa
YP_001254792.1	This CDS is also similar to CBO2796 (77.9 38d. in 367 aa overlap), CBO1974 (35.5 38d. in 360 aa overlap),CBO1978 (36.827 38d. in 353 aa overlap) and to CBO1976 (32.682 38d. in 358 aa overlap)
YP_001254793.1	N-terminus is similar to the N-terminal region of Bacillus subtilis poly(A) polymerase PapS or BSU22450 SWALL:PAPS_BACSU (SWALL:P42977) (397 aa) fasta scores: E(): 1.3e-26, 43.05 38d in 216 aa. Full length CDS is similar to Clostridium tetani poly(A) polymerase CTC01205 SWALL:Q895R6 (EMBL:AE015940) (451 aa) fasta scores: E(): 3.5e-79, 50.55 38d in 451 aa
YP_001254794.1	Similar to the N-terminal region of Clostridium acetobutylicum uncharacterized protein, homolog of YcgL B. subtilis CAC1496 SWALL:Q97IZ0 (EMBL:AE007660) (339 aa) fasta scores: E(): 1.5e-07, 46.34 38d in 82 aa. Probable gene remnant
YP_001254798.1	to the full length CDS. C-terminus is similar to the C-terminal region of Streptococcus pneumoniae, and Streptococcus pneumoniae sensor protein ciah ciah or sp0799 or spr0708 SWALL:CIAH_STRPN (SWALL:Q54955) (444 aa) fasta scores: E(): 1.7e-16, 36.01 38d in 236 aa
YP_001254800.1	; similar to upstream CDS CBO2309 (31.638 38d)
YP_001254801.1	; similar to downstream CDS CBO2308 (31.638 38d)
YP_001254808.1	Doubtful CDS.
YP_001254813.1	Poor database matches. C-terminus is weakly similar to the C-terminal region of Rhizobium loti hypothetical protein MSI089 SWALL:Q8KGX4 (EMBL:AL672112) (847 aa) fasta scores: E(): 1.5e-07, 26.54 38d in 584 aa
YP_001254814.1	N-terminal region is similar to Bordetella bronchiseptica ATPase BB0910 SWALL:CAE31409 (EMBL:BX640439) (331 aa) fasta scores: E(): 7.3e-24,32.57 38d in 307 aa
YP_001254816.1	Similar to the N-terminal region of Anabaena sp. hypothetical protein ALL1140 SWALL:Q8YXS1 (EMBL:AP003584) (313 aa) fasta scores: E(): 5.2e-30, 45.1 38d in 235 aa; Also similar to CBO1751 (81.16 38d), CBO1653 (77.4 id.), CBO3016 (47.6 38d.)
YP_001254822.1	N-terminal region is similar to Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 6.4e-14, 31.07 id in 280 aa
YP_001254823.1	N-terminus is weakly similar to the N-terminal region of Bacillus subtilis hypothetical protein BSU25970 SWALL:YQCA_BACSU (SWALL:P45936) (192 aa) fasta scores: E(): 0.0063, 24.52 38d in 159 aa
YP_001254829.1	N-terminal region is weakly similar to Clostridium perfringens hypothetical protein CPE1047 SWALL:Q8XLJ4 (EMBL:AP003189) (149 aa) fasta scores: E(): 0.17, 28.48 id in 158 aa
YP_001254830.1	Internal region is similar to the N-terminal region of Lactococcus lactis bacteriophage TP901-1 tape measure protein Tmp SWALL:Q9G097 (EMBL:AF252967) (937 aa) fasta scores: E(): 2.9e-38, 34.52 38d in 562 aa
YP_001254845.1	N-terminal region is similar to Clostridium tetani protein CTC01089 SWALL:Q896B9 (EMBL:AE015939) (566 aa) fasta scores: E(): 6.5e-24, 25.3 38d in 581 aa
YP_001254853.1	. Doubtful CDS
YP_001254867.1	. Doubtful CDS
YP_001254871.1	N-terminal region is similar to Bacillus subtilis RNA polymerase sigma-E factor precursor SigE or SpoIIGB or BSU15320 SWALL:RPSE_BACSU (SWALL:P06222) (239 aa) fasta scores: E(): 7.1e-08, 32.95 38d in 176 aa
YP_001254876.1	. Doubtful CDS
YP_001254884.1	Similar to the N-terminal region of Clostridium acetobutylicum hypothetical protein CAC1944 SWALL:Q97HR4 (EMBL:AE007699) (146 aa) fasta scores: E(): 1.3e-12,44.53 38d in 119 aa
YP_001254885.1	N-terminus is similar to the N-terminal region of Listeria innocua hypothetical protein LIN2418 SWALL:Q928W4 (EMBL:AL596172) (256 aa) fasta scores: E(): 1e-11, 31.14 id in 228 aa
YP_001254888.1	Doubtful CDS.
YP_001254889.1	N-terminus is similar to the N-terminal region of Bradyrhizobium japonicum protein BSR0038 SWALL:Q89YB6 (EMBL:AP005935) (93 aa) fasta scores: E(): 0.0012, 52.94 id in 51 aa
YP_001254891.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_001254894.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001254897.1	catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate
YP_001254899.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_001254900.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001254905.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive
YP_001254909.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_001254910.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_001254911.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_001254913.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_001254914.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_001254917.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_001254918.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_001254919.1	. Doubtful CDS
YP_001254920.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity
YP_001254921.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_001254923.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_001254925.1	. Doubtful CDS
YP_001254926.1	. Doubtful CDS
YP_001254927.1	. Doubtful CDS
YP_001254929.1	catalyzes the formation of UDP pyrophosphate from isopentenyl pyrophosphate
YP_001254930.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_001254931.1	Catalyzes the phosphorylation of UMP to UDP
YP_001254932.1	. Doubtful CDS
YP_001254933.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_001254934.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_001254935.1	CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
YP_001254936.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_001254937.1	C-terminus is similar to the C-terminal region of Haemophilus influenzae Smf protein HI0985 SWALL:SMF_HAEIN (SWALL:P43862) (373 aa) fasta scores: E(): 3e-26, 35.64 id in 317 aa, and to Clostridium tetani Smf protein,DNA processing chain A CTC01258 SWALL:Q895L5 (EMBL:AE015940) (361 aa) fasta scores: E(): 1.5e-65,54.69 38d in 362 aa
YP_001254940.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_001254941.1	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc)
YP_001254943.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_001254944.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_001254945.1	Essential for efficient processing of 16S rRNA
YP_001254947.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_001254950.1	Similar to Bacillus subtilis cell division protein FtsY homolog FtsY or Srb or BSU15950 SWALL:FTSY_BACSU (SWALL:P51835) (329 aa) fasta scores: E(): 5.2e-52, 53.15 id in 301 aa, and to the C-terminal region of Escherichia coli cell division protein FtsY or b3464 SWALL:FTSY_ECOLI (SWALL:P10121) (497 aa) fasta scores: E(): 3.3e-44, 49 38d in 300 aa
YP_001254953.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_001254954.1	carries the fatty acid chain in fatty acid biosynthesis
YP_001254955.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_001254956.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_001254957.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_001254958.1	in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta
YP_001254960.1	Similar to Clostridium sticklandii proline reductase PrdB SWALL:Q9Z4Q7 (EMBL:AJ130879) (242 aa) fasta scores: E(): 8.5e-70, 79.07 38d in 239 aa. CDS contains an in frame UGA codon for probable selenocysteine insertion
YP_001254962.1	Highly similar to CBO2480 (84.5 38d), CBO2483 (63.9 38d)
YP_001254964.1	Similar to the N-terminal region of Clostridium sticklandii electron transfer protein PrdC SWALL:Q9L4Q5 (EMBL:AJ130879) (402 aa) fasta scores: E(): 6e-59, 47.13 id in 367 aa
YP_001254967.1	Identical to CBO3191 (99.4), also similar to CBO3190 (53.8) and similar to the upstream CDS (CBO2471,53.8).
YP_001254968.1	Identical CBO3191 (99.7), also similar to CBO3190 (53.5) and similar to the upstream CDS (CBO2470, 53.8).
YP_001254974.1	Similar to Clostridium sticklandii proline reductase PrdB SWALL:Q9Z4Q7 (EMBL:AJ130879) (242 aa) fasta scores: E(): 1.1e-71, 80.33 38d in 239 aa. CDS contains an in frame UGA codon for probable selenocysteine insertion
YP_001254978.1	Similar to the N-terminal region of Clostridium sticklandii electron transfer protein PrdC SWALL:Q9L4Q5 (EMBL:AJ130879) (402 aa) fasta scores: E(): 9.7e-61,48.77 38d in 367 aa
YP_001254979.1	N-terminal region is similar to Clostridium sticklandii electron transfer protein PrdC SWALL:Q9L4Q5 (EMBL:AJ130879) (402 aa) fasta scores: E(): 9e-67, 49.73 id in 380 aa
YP_001254982.1	. Doubtful CDS
YP_001254983.1	N-terminal region is similar to Clostridium sticklandii electron transfer protein PrdC SWALL:Q9L4Q5 (EMBL:AJ130879) (402 aa) fasta scores: E(): 3e-68, 49.6 id in 379 aa
YP_001254988.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_001254990.1	catalyzes branch migration in Holliday junction intermediates
YP_001254993.1	required for 70S ribosome assembly
YP_001254997.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_001254998.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_001255001.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_001255004.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_001255005.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_001255006.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_001255007.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_001255008.1	Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_001255009.1	Essential for recycling GMP and indirectly, cGMP
YP_001255013.1	Similar to the C-terminal region of Clostridium perfringens probable transcriptional regulator CPE1097 SWALL:Q8XLE5 (EMBL:AP003189) (70 aa) fasta scores: E(): 6.4e-09, 47.17 38d in 53 aa
YP_001255016.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_001255017.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_001255020.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_001255027.1	Similar to the N-termina region of Bacillus cereus hypothetical protein BC4080 SWALL:Q819A6 (EMBL:AE017011) (181 aa) fasta scores: E(): 3, 31.25 38d in 48 aa
YP_001255030.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin
YP_001255031.1	sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation
YP_001255033.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_001255036.1	. Doubtful CDS
YP_001255039.1	sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment
YP_001255041.1	. Doubtful CDS
YP_001255042.1	N-terminus is similar to the N-terminal region of Clostridium perfringens hypothetical protein CPE1280 SWALL:Q8XKW2 (EMBL:AP003189) (50 aa) fasta scores: E(): 0.0079, 53.12 38d in 32 aa
YP_001255044.1	Also similar to the upstream CDS CBO2547 (34.9 id)
YP_001255045.1	Possible alternative translational start site; Also similar to the downstream CDS CBO2546 (34.9 id)
YP_001255047.1	Similar to Lactobacillus plantarum prophage LP1 protein 19 LP_0642 SWALL:Q88YV0 (EMBL:AL935253) (286 aa) fasta scores: E(): 2.4e-33, 38.43 38d in 268 aa. Possible alternative translational start si
YP_001255048.1	Also similar to N-terminal region of CBO0479 (82.8 id)
YP_001255049.1	Weakly similar to the N-terminal regioon of Bacillus subtilis stage V sporulation protein D SpoVD or BSU15170 SWALL:SP5D_BACSU (SWALL:Q03524) (645 aa) fasta scores: E(): 1.8e-16, 26.78 38d in 575 aa. Similar to Clostridium tetani penicillin-binding protein 2 CTC01065 SWALL:Q896E2 (EMBL:AE015939) (550 aa) fasta scores: E(): 2.6e-80, 44.54 38d in 559 aa
YP_001255050.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_001255058.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_001255060.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001255063.1	Similar to the N-terminal region of Azotobacter vinelandii nitrogen fixation protein NifU SWALL:NIFU_AZOVI (SWALL:P05340) (312 aa) fasta scores: E(): 1e-21, 52.94 id in 119 aa. Full length CDS is similar to Clostridium perfringens probable nitrogen fixation protein NifU or CPE1784 SWALL:Q8XJH2 (EMBL:AP003191) (142 aa) fasta scores: E(): 1.3e-45, 82.27 38d in 141 aa
YP_001255071.1	catalyzes the formation of L-proline from L-ornithine
YP_001255078.1	N-terminus is similar to the N-terminal region of Escherichia coli phosphoenolpyruvate synthase PpsA or Pps or b1702 SWALL:PPSA_ECOLI (SWALL:P23538) (791 aa) fasta scores: E(): 1.8e-22, 36.79 38d in 337 aa. Full length CDS is similar to Bacillus cereus phosphoenolpyruvate synthase BC3087 SWALL:Q81BR3 (EMBL:AE017008) (868 aa) fasta scores: E(): 6.8e-35, 29.98 38d in 877 aa
YP_001255083.1	Similar to an internal region of Bacillus licheniformis bacitracin synthetase 1 BacA SWALL:BACA_BACLI (SWALL:O68006) (5255 aa) fasta scores: E(): 4.3e-49, 33.15 38d in 561 aa
YP_001255087.1	Poor database matches. C-terminus is weakly similar to the C-terminal region of Methanococcus maripaludis seryl-tRNA synthetase SerS or MMP0879 SWALL:SYS_METMP (SWALL:O30520) (514 aa) fasta scores: E(): 5.2e-12, 22.86 id in 363 aa
YP_001255088.1	C-terminal region is weakly similar to Bacillus brevis 4'-phosphopantetheinyl transferase Gsp SWALL:GSP_BACBR (SWALL:P40683) (237 aa) fasta scores: E(): 2.2e-06, 28.57 38d in 203 aa. Possible alternative translational start site
YP_001255089.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_001255090.1	catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_001255091.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_001255097.1	to the full length CDS
YP_001255098.1	Weakly similar to many L-lactate dehydrogenases. Possible alternative translational start sites downstream of the current one.
YP_001255099.1	to the full length CDS. C-terminal region is similar to many proteins,including Lactobacillus plantarum hypothetical protein LP_0490 SWALL:Q88Z69 (EMBL:AL935253) (184 aa) fasta scores: E(): 0.011, 26.34 38d in 186 aa. Possible alternative translational start sites
YP_001255100.1	Similar to Clostridium acetobutylicum predicted metal-dependent phosphoesterase CAC1092 SWALL:Q97K29 (EMBL:AE007625) (274 aa) fasta scores: E(): 3.9e-51,52.38 38d in 273 aa. CDS contains a rare AUU translation start codon
YP_001255101.1	catalyzes the removal of amino acids from the N termini of peptides
YP_001255104.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_001255107.1	Similar to Clostridium perfringens hypothetical protein CPE1612 SWALL:Q8XJZ1 (EMBL:AP003191) (217 aa) fasta scores: E(): 9e-33, 48.84 38d in 217 aa. CDS is extended at the C-terminus in comparison to orthologues,possible frame shift mutation in the C-terminal region
YP_001255110.1	N-terminus is similar to thye N-terminal region of Streptomyces coelicolor hypothetical protein SCO3464 or SCE46.21 SWALL:Q9RKG8 (EMBL:AL939116) (210 aa) fasta scores: E(): 1.1e-13, 30.92 38d in 194 aa
YP_001255112.1	to the full length CDS. C-terminal region is similar to many proteins,including Rattus norvegicus thiosulfate sulfurtransferase TST SWALL:THTR_RAT (SWALL:P24329) (295 aa) fasta scores: E(): 3.2e-14, 25 38d in 276 aa
YP_001255113.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_001255114.1	similar to the upstream CDS CBO2693 (30.4 38d) and CBO2692 (26.6 38d)
YP_001255120.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex
YP_001255121.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex
YP_001255122.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex
YP_001255123.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex
YP_001255124.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex
YP_001255126.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits
YP_001255127.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.
YP_001255134.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_001255136.1	makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene
YP_001255137.1	makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene
YP_001255139.1	Similar in part to Clostridium acetobutylicum hypothetical protein CAC2142 SWALL:Q97H71 (EMBL:AE007715) (148 aa) fasta scores: E(): 6.3e-05, 33.17 38d in 211 aa. CDS contains additional internal amino acids relative to similar proteins
YP_001255143.1	positive regulator of class III flagellar genes
YP_001255144.1	membrane protein involved in the flagellar export apparatus
YP_001255145.1	FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined
YP_001255147.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_001255159.1	Note the overlap with the upstream CDS.
YP_001255160.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001255161.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_001255162.1	forms a junction between the M-ring and FlgB during flagella biosynthesis
YP_001255163.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_001255164.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod
YP_001255166.1	doubtful CDS
YP_001255168.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_001255169.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_001255180.1	Note that the C_terminal region is most similar to the Clostridial spore coat proteins
YP_001255191.1	similar to the upstream CDS CBO2693 (59.6 38d) and CBO2617 (26.6 38d)
YP_001255192.1	Similar to the downstream CDS CBO2692 (59.6 38d) and CBO2617 (30.4 38d)
YP_001255206.1	Weakly similar to the mentioned database matches
YP_001255207.1	Note the database similarities are weak and only to the C-terminal region
YP_001255222.1	undetermined role; similar to CarB protein but much smaller
YP_001255224.1	Similar to the C-terminal region of Staphylococcus aureus capsular polysaccharide biosynthesis protein CapD SWALL:CAPD_STAAU (SWALL:P39853) (599 aa) fasta scores: E(): 3e-31, 37.5 38d in 336 aa, and to the full length Clostridium acetobutylicum predicted nucleoside-diphosphate sugar epimerase CAC2194 SWALL:Q97H20 (EMBL:AE007719) (340 aa) fasta scores: E(): 3.2e-81, 68.03 38d in 341 aa
YP_001255225.1	Similar to the N-terminal region of Clostridium acetobutylicum glycosyltransferase fused to TPR-repeat domain CAC3308 SWALL:Q97E12 (EMBL:AE007827) (593 aa) fasta scores: E(): 7e-26, 32.49 38d in 514 aa
YP_001255228.1	Similar to Clostridium acetobutylicum glycosyltransferase fused to TRP-repeat domain cac3308 SWALL:Q97E12 (EMBL:AE007827) (593 aa) fasta scores: E(): 3.7e-26, 28.1 38d in 612 aa. CDS is extended at the C-terminus in comparison to C. acetobutylicum protein
YP_001255229.1	Highly similar to the upstream CDS CBO2731 (98.9 id)
YP_001255230.1	Highly similar to the downstream CDS CBO2730 (98.9 id)
YP_001255232.1	C-terminal region is similar to Bacillus halodurans flagellar hook-associated protein 2 FliD or BH3614 SWALL:FLID_BACHD (SWALL:Q9K6W0) (532 aa) fasta scores: E(): 2.1e-14, 27.55 38d in 508 aa. Full length CDS is similar to Clostridium acetobutylicum flagellar hook-associated protein CAC2205 SWALL:Q97H10 (EMBL:AE007721) (638 aa) fasta scores: E(): 1e-23, 27.36 id in 826 aa
YP_001255236.1	affects carbohydrate metabolism; has regulatory role in many processes
YP_001255237.1	binds to flagellin and appears to stabilize flagellin during flagella assembly
YP_001255242.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001255244.1	Similar to Clostridium tetani chemotaxis protein CTC01728 SWALL:Q893T1 (EMBL:AE015942) (134 aa) fasta scores: E(): 1.6e-30, 67.93 38d in 131 aa. Similar to an internal region of Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri chemotaxis protein CheW or b1887 or c2302 or z2941 or ecs2597 or sf1936 or s2027 SWALL:CHEW_ECOLI (SWALL:P07365) (167 aa) fasta scores: E(): 1.5e-08, 31.34 38d in 134 aa
YP_001255250.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_001255253.1	C-terminal region is similar to Escherichia coli,Escherichia coli O6, and Escherichia coli O157:H7 PTS system, glucose-specific IIBC component PtsG or GlcA or Umg or b1101 or c1373 or z1740 or ecs1479 SWALL:PTGB_ECOLI (SWALL:P05053) (477 aa) fasta scores: E(): 2.6e-50, 42.25 id in 497 aa. Full length CDS is similar to Bacillus subtilis PTS system IIABC component YbfS or bsu02350 SWALL:YBFS_BACSU (SWALL:P39816) (631 aa) fasta scores: E(): 4e-56, 41.9 38d in 642 aa
YP_001255255.1	Possible alternative translational start site
YP_001255258.1	. Doubtful CDS
YP_001255259.1	Also similar to CBO1192 (65.74 38d)
YP_001255260.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_001255270.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001255271.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001255293.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_001255301.1	with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate
YP_001255304.1	Highly similar to CBO1301 (89.0 38d) and CBO3279 (89.2 38d)
YP_001255309.1	catalyzes the formation of glutamate from glutamine
YP_001255315.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_001255318.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_001255319.1	catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines
YP_001255331.1	Weakly similar to the N-terminal region of Thermoanaerobacter thermosulfurogenes amylopullulanase precursor amyB SWALL:APU_THETU (SWALL:P38536) (1861 aa) fasta scores: E(): 6.8, 21.5 38d in 586 aa
YP_001255333.1	catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate
YP_001255362.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_001255364.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_001255371.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_001255372.1	involved in de novo purine biosynthesis
YP_001255373.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_001255374.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_001255375.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_001255376.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_001255378.1	In Escherichia coli the molybdenum binding and iron-sulfur binding domains of xanthine dehydrogenase are carried on two separate genes, wheareas in this case they are present on a single gene.
YP_001255379.1	Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases
YP_001255380.1	in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS
YP_001255381.1	with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase
YP_001255383.1	catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position
YP_001255385.1	catalyzes the formation of pyruvate from 2,3-diaminopropionate
YP_001255401.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_001255407.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_001255421.1	This CDS is also similar to CBO0992 (34.488 identity in 722 aa overlap) and to CBO0993 (34.669 identity in 724 aa overlap).
YP_001255430.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium
YP_001255431.1	synthesizes RNA primers at the replication forks
YP_001255432.1	dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_001255434.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001255437.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_001255438.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_001255439.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_001255440.1	N-terminal region similar to diacylglycerol kinase,and C-terminal region to phosphatases.
YP_001255446.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_001255449.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_001255450.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_001255451.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_001255452.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_001255453.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_001255454.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_001255455.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001255456.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_001255459.1	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
YP_001255460.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_001255461.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_001255468.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_001255469.1	This CDS contains an in-frame UGA codon encoding selenocysteine
YP_001255476.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_001255478.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_001255479.1	involved in the peptidyltransferase reaction during translation
YP_001255488.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_001255490.1	blocks the formation of polar Z-ring septums
YP_001255493.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_001255494.1	functions in MreBCD complex in some organisms
YP_001255495.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_001255496.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_001255500.1	Similar to the N-terminal region of several including Methanosarcina acetivorans phenazine biosynthesis protein phzf or ma3532 SWALL:Q8TK84 (EMBL:AE011062) (283 aa) fasta scores: E(): 9.8e-17, 37.5 id in 168 aa
YP_001255502.1	Similar to C-terminal region of Escherichia coli soluble lytic murein transglycosylase precursor Slt or SltY SWALL:SLT_ECOLI (SWALL:P03810) (645 aa) fasta scores: E(): 6.5e-10, 33.98 38d in 153 aa, and over the entire length of Clostridium acetobutylicum secreted protein,similar to catalytic domain of murein transglycosylase cac1100 SWALL:Q97K21 (EMBL:AE007626) (183 aa) fasta scores: E(): 2.8e-38, 56.64 38d in 173 aa
YP_001255503.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_001255504.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_001255505.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_001255506.1	Also similar to the prophage encoded CDSs, CBO1751 (50 38d), CBO2325 (48.8 0d.), CBO1653 (55.5 0d.)
YP_001255509.1	Similar to the veryC-terminus of the Clostridium tetani protein ctc01110. Weakly similar to the downstream CDS CB03020
YP_001255510.1	Weakly similar to the upstream CDS CB03019
YP_001255512.1	. Note the product of this CDS is rich in the amino acids Asn and Ile.
YP_001255516.1	Note the product of this CDS is rich in the amino acids Asn Leu and Ile.
YP_001255518.1	Weakly similar to the downstream CDS CB03029
YP_001255519.1	Weakly similar to the upstream CDS CB03028
YP_001255520.1	Similar to Clostridium tetani protein ctc01102 SWALL:Q896A7 (EMBL:AE015939) (110 aa) fasta scores: E(): 9.8e-23, 56.36 38d in 110 aa
YP_001255523.1	Partial similarity to the C-terminus of several bacteriophage tail length determining proteins.
YP_001255524.1	Weakly similar to the very C-terminus of several Eukaryotic heat shock proteins
YP_001255525.1	Similar to Clostridium tetani protein ctc01097 SWALL:Q896B1 (EMBL:AE015939) (154 aa) fasta scores: E(): 1.6e-30, 68.11 38d in 138 aa
YP_001255533.1	Similar to many phage replication and chromosome replication proteins
YP_001255534.1	Similar to Streptococcus mitis phage SM1 gp19 SWALL:AAP81901 (EMBL:AY007505) (265 aa) fasta scores: E(): 1.1e-24, 38.14 38d in 270 aa, and to Staphylococcus aureus prophage phiPV83 orf 20 SWALL:Q9MBR9 (EMBL:AB044554) (267 aa) fasta scores: E(): 2.3e-21, 33.33 38d in 288 aa
YP_001255536.1	Similar to several bacteriophage Cro-like regulatory proteins
YP_001255546.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001255547.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_001255548.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001255550.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_001255552.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_001255553.1	Similar to N-terminal region of Escherichia coli single-stranded-DNA-specific exonuclease RecJ or b2892 SWALL:RECJ_ECOLI (SWALL:P21893) (577 aa) fasta scores: E(): 1.6e-09, 26.38 38d in 288 aa
YP_001255554.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_001255555.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_001255556.1	Partially similar to Escherichia coli arylsulfatase regulatory protein AslB or AtsB or b3800 SWALL:ASLB_ECOLI (SWALL:P25550) (411 aa) fasta scores: E(): 0.02, 24.22 38d in 355 aa
YP_001255559.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_001255560.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_001255561.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_001255562.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_001255563.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_001255579.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.
YP_001255580.1	binds to sigma F preventing its association with RNA polymerase during sporulation
YP_001255596.1	Similar to N-terminal region of Bacillus cereus internalin protein bc0552 SWALL:Q81I65 (EMBL:AE016999) (886 aa) fasta scores: E(): 7.1e-21, 30.16 38d in 358 aa,and to C-terminal region of Clostridium acetobutylicum possible surface protein, responsible for cell interaction, contains cell adhesion domain and chw-repeats cac3279 SWALL:Q97E37 (EMBL:AE007824) (808 aa) fasta scores: E(): 3.3e-26, 35.25 38d in 312 aa
YP_001255602.1	.; similar to CBO3111 (42.304 38d. in 955 aa overlap).
YP_001255603.1	.; similar to CBO3110 (42.304 38d. in 955 aa overlap).
YP_001255607.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_001255610.1	Also similar to CBO3427 (53.37 38d)
YP_001255613.1	MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange
YP_001255620.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_001255621.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_001255625.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_001255627.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_001255628.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_001255633.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_001255642.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_001255643.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_001255646.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_001255650.1	Contains 6x degenerate repeat
YP_001255653.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_001255659.1	similarity to activators of 2-hydroxyacyl-CoA dehydratases is confined to the N-terminal region; Also similar to CBO1130 (62.2 38d).
YP_001255664.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_001255668.1	Contains Pfam matches (PF03734, PF01471) which suggests that this is an enzyme which interacts with peptidoglycan.
YP_001255671.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_001255675.1	Similar to the C-terminal portion of predicted DNA ligases (CAE10810, DNLJ_BACSU).
YP_001255679.1	Identical CBO2471 (99.7), also similar to CBO3191 (53.5) and similar to the upstream CDS (CBO2470, 53.8).
YP_001255680.1	Identical CBO2470 (99.7), also similar to CBO3190 (53.5) and similar to the upstream CDS (CBO2471, 53.5).
YP_001255689.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_001255695.1	May interact with DNA.
YP_001255698.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_001255713.1	Asp/Asn-rich in the central portion
YP_001255714.1	Shares sequence conservation with upstream CDS
YP_001255715.1	Shares sequence conservation with downstream CDS
YP_001255717.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_001255718.1	Contains N-terminal hydrophobic region suggesting an interaction with membrane.
YP_001255719.1	Bacillus subtilis orthologue restricted to the prespore compartment of sporulating cells.
YP_001255720.1	binds and unfolds substrates as part of the ClpXP protease
YP_001255721.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_001255722.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_001255725.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001255726.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits
YP_001255727.1	responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+)
YP_001255728.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_001255730.1	involved in the allosteric regulation of aspartate carbamoyltransferase
YP_001255731.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_001255734.1	Also similar to CBO2197 (24.4 38d), CBO2202 (29.2 id), CBO3245 (37.9), CBO3289 (26.1 38d), CBO3629 (38.9 id)
YP_001255735.1	Also similar to CBO2197 (24.4 38d), CBO2202 (29.2 id), CBO3246 (37.9), CBO3289 (26.1 38d), CBO3629 (38.9 id)
YP_001255742.1	Appears to have an extended C-terminus compared to most homologues.
YP_001255747.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_001255751.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001255752.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001255753.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_001255756.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_001255764.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_001255765.1	Highly similar to CBO2803 (89.0 38d) and CBO1301 (89.2 38d)
YP_001255767.1	Downstream convergently transcribed paralogue
YP_001255768.1	Downstream convergently transcribed paralogue
YP_001255770.1	N-terminal extension relative to homologues
YP_001255779.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_001255780.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_001255782.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_001255783.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_001255788.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_001255789.1	Self match: 67.698 38dentity (67.9310ngapped) in 291 aa overlap with CBO1644
YP_001255790.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_001255794.1	Family includes Escherichia coli carbon starvation protein SWALL:CSTA_ECOLI (SWALL:P15078)
YP_001255796.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_001255797.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_001255803.1	Contains 2 domain matches to Pfam domain PF01966 which usually only occurs in single copies.
YP_001255807.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_001255815.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001255821.1	catalyzes the removal of amino acids from the N termini of peptides
YP_001255826.1	divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases
YP_001255827.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_001255855.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_001255856.1	catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.
YP_001255860.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_001255862.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_001255868.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_001255869.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_001255875.1	Similar to C-terminal region of several transketolases including Homo sapiens transketolase Tkt or Tkt1 SWALL:TKT_HUMAN (SWALL:P29401) (623 aa) fasta scores: E(): 6e-37, 40.69 38d in 317 aa
YP_001255876.1	Similar to the N-terminal region of several transketolase including Homo sapiens transketolase Tkt or Tkt1 SWALL:TKT_HUMAN (SWALL:P29401) (623 aa) fasta scores: E(): 3.8e-36, 42.85 38d in 273 aa
YP_001255879.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_001255887.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001255894.1	catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate
YP_001255901.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_001255904.1	catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA
YP_001255907.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_001255908.1	catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate
YP_001255909.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_001255913.1	Similar to the C-terminal region of Bacillus cereus spore cortex-lytic enzyme precursor sleb or bc2753 SWALL:SLEB_BACCR (SWALL:P70874) (259 aa) fasta scores: E(): 2.1e-13, 42.52 38d in 127 aa
YP_001255922.1	Similar to C-terminal region of Escherichia coli fumarate hydratase class I, anaerobic FumB or b4122 SWALL:FUMB_ECOLI (SWALL:P14407) (548 aa) fasta scores: E(): 4.1e-18, 38.76 38d in 178 aa
YP_001255923.1	Catalyzes the reversible hydration of fumaric acid to yield I-malic acid
YP_001255926.1	forms a direct contact with the tRNA during translation
YP_001255927.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_001255928.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_001255930.1	with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene
YP_001255931.1	with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene
YP_001255932.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_001255933.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_001255934.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001255935.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_001255936.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_001255937.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_001255938.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_001255939.1	Similar to archaeal and eukaryotic ribosomal protein L14e
YP_001255941.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_001255942.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_001255943.1	late assembly protein
YP_001255944.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_001255945.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_001255946.1	binds 5S rRNA along with protein L5 and L25
YP_001255947.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_001255948.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_001255949.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_001255950.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_001255951.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_001255952.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_001255953.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_001255954.1	one of the stabilizing components for the large ribosomal subunit
YP_001255955.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_001255956.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_001255957.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_001255958.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_001255959.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_001255960.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_001255961.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_001255962.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_001255963.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_001255964.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001255965.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001255966.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_001255967.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_001255969.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_001255970.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_001255971.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_001255972.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_001255973.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_001255974.1	binds directly to 23S ribosomal RNA
YP_001255975.1	Modulates Rho-dependent transcription termination
YP_001255976.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_001255977.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif
YP_001255978.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001255979.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001255982.1	flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor
YP_001255984.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_001255987.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_001255990.1	non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair
YP_001255991.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_001255997.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001255998.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_001255999.1	Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001256000.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_001256001.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_001256004.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_001256005.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_001256016.1	Similar over its C-terminal region to Escherichia coli, and Escherichia coli O157:H7 MazG protein or b2781 or z4096 or ecs3641 SWALL:MAZG_ECOLI (SWALL:P33646) (263 aa) fasta scores: E(): 7.8e-33, 41.96 38d in 255 aa, and similar over its entire length to Clostridium tetani protein ctc00198 SWALL:Q899H9 (EMBL:AE015936) (491 aa) fasta scores: E(): 3.4e-118, 66.18 38d in 482 aa
YP_001256019.1	cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein
YP_001256021.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_001256025.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_001256026.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_001256027.1	stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus
YP_001256029.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_001256034.1	catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate
YP_001256039.1	Recently identified as a heme protein sensor of nitric oxide; Nioche et al. 2004, Science 306: 1550 - 1553
YP_001256043.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_001256046.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001256049.1	Similar to the C-terminal region of several preprotein translocase SecA subunit
YP_001256050.1	SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_001256061.1	catalyzes the formation of biotin from dethiobiotin and sulfur
YP_001256062.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain
YP_001256076.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_001256078.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_001256079.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001256088.1	acts to load the DnaB helicase onto the initiation site during DNA replication
YP_001256094.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_001256098.1	unwinds double stranded DNA
YP_001256100.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_001256104.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_001256106.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_001256116.1	Also similar to CBO3640 (44.488 38d. in 254 aa overlap).
YP_001256118.1	Also similar to CBO3638 (44.488 38d. in 254 aa overlap).
YP_001256119.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_001256120.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_001256121.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_001256123.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_001256125.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_001256126.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_001256127.1	catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.
YP_001256136.1	Weakly Similar to Pediococcus pentosaceus plasmid orf1 TR:Q9X3B9 (EMBL:AF069302) (111 aa) fasta scores: E(): 0.0014, 33.000 38d in 100 aa, and to Pediococcus pentosaceus mobc-like protein TR:Q9RHE2 (EMBL:AF033858) (73 aa) fasta scores: E(): 0.6, 36.111 38d in 72 aa, and to Pasteurella multocida, mbecy or mobC TR:Q51926 (EMBL:U57647) (101 aa) fasta scores: E(): 0.77, 29.808 38d in 104 aa
YP_001256137.1	Similar to Staphylococcus aureus Plasmid pS194 rlx protein SW:RLX1_STAAU (P12054) (320 aa) fasta scores: E(): 6.8e-15, 33.333 38d in 252 aa, and to Fusobacterium nucleatum DNA relaxation protein homolog rlxA TR:Q9L9V7 (EMBL:AF159249) (348 aa) fasta scores: E(): 8.4e-15,36.458 38d in 288 aa, and to Staphylococcus epidermidis mobilization protein moba2 TR:Q9R968 (EMBL:AF045472) (337 aa) fasta scores: E(): 4.4e-13, 25.681 38d in 257 aa
YP_001256142.1	May be involved in bacteriocin maturation/secretion. Similar to Sulfolobus solfataricus zn-dependent protease, TldD protein homolog, putative tldD TR:AAK40965 (EMBL:AE006693) (443 aa) fasta scores: E(): 5.2e-13, 30.736 38d in 231 aa, and to Escherichia coli tldd protein tldd or b3244 SW:TLDD_ECOLI (P46473) (481 aa) fasta scores: E(): 1.6e-11, 27.306 38d in 271 aa
YP_001256143.1	May be involved in bacteriocin maturation/secretion. Similar to Buchnera aphidicola (subspAcyrthosiphon pisum) (Acyrthosiphon pisum pmba protein homolog pmba or bu089 SW:PMBA_BUCAI (P57191) (446 aa) fasta scores: E(): 0.19, 23.797 38d in 395 aa, and to Escherichia coli pmba protein pmba or tlde or b4235 SW:PMBA_ECOLI (P24231) (450 aa) fasta scores: E(): 0.98,20.716 38d in 391 aa
YP_001256144.1	May be involved in bacteriocin secretion. Contains IM domain at N-terminus and ATP-binding domain at C-terminus. Similar to Campylobacter jejuni lipid export ABC transport protein msba or cj0803 TR:Q9PPB7 (EMBL:AL139076) (580 aa) fasta scores: E(): 4.6e-36,28.755 38d in 546 aa, and to Synechocystis sp hlyb family hlyb or sll1180 TR:P74176 (EMBL:D90913) (1011 aa) fasta scores: E(): 1e-32, 26.488 38d in 521 aa, and to Leuconostoc mesenteroides mesentericin y105 transport ATP-binding protein MesD mesD SW:MESD_LEUME (Q10418) (722 aa) fasta scores: E(): 3.1e-31, 27.370 38d in 559 aa