-- dump date 20140619_043351 -- class Genbank::CDS -- table cds_note -- id note YP_002860310.1 identified by glimmer; putative YP_002860311.1 identified by match to protein family HMM PF00565 YP_002860313.1 identified by match to protein family HMM PF01742; match to protein family HMM PF07951; match to protein family HMM PF07952; match to protein family HMM PF07953 YP_002860314.1 identified by match to protein family HMM PF01742; match to protein family HMM PF07953; match to protein family HMM PF08470 YP_002860315.1 identified by similarity to GB:ABC26000.1; match to protein family HMM PF06597 YP_002860316.1 identified by match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR03209 YP_002860320.1 identified by glimmer; putative YP_002860321.1 identified by match to protein family HMM PF01183; match to protein family HMM PF01471 YP_002860322.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF06445 YP_002860323.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002860324.1 identified by glimmer; putative YP_002860326.1 identified by match to protein family HMM PF00438; match to protein family HMM PF02772; match to protein family HMM PF02773; match to protein family HMM TIGR01034 YP_002860327.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002860328.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002860329.1 identified by glimmer; putative YP_002860330.1 identified by glimmer; putative YP_002860332.1 identified by match to protein family HMM PF04055 YP_002860333.1 identified by glimmer; putative YP_002860334.1 identified by match to protein family HMM PF02390; match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002860335.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06969 YP_002860337.1 identified by match to protein family HMM PF02633 YP_002860338.1 identified by match to protein family HMM PF01180 YP_002860340.1 identified by match to protein family HMM PF04055 YP_002860342.1 identified by match to protein family HMM PF00196 YP_002860344.1 identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002860345.1 identified by glimmer; putative YP_002860346.1 identified by glimmer; putative YP_002860347.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_002860348.1 identified by match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663 YP_002860349.1 identified by match to protein family HMM PF01841 YP_002860350.1 identified by glimmer; putative YP_002860352.1 identified by glimmer; putative YP_002860353.1 identified by glimmer; putative YP_002860354.1 identified by glimmer; putative YP_002860357.1 identified by match to protein family HMM PF01797 YP_002860358.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002860359.1 identified by glimmer; putative YP_002860361.1 identified by glimmer; putative YP_002860363.1 identified by glimmer; putative YP_002860364.1 identified by glimmer; putative YP_002860365.1 identified by glimmer; putative YP_002860366.1 identified by glimmer; putative YP_002860367.1 identified by glimmer; putative YP_002860368.1 identified by glimmer; putative YP_002860371.1 identified by glimmer; putative YP_002860372.1 identified by glimmer; putative YP_002860373.1 identified by match to protein family HMM PF01507 YP_002860374.1 identified by match to protein family HMM PF04024 YP_002860376.1 identified by glimmer; putative YP_002860377.1 identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002860378.1 identified by glimmer; putative YP_002860379.1 identified by match to protein family HMM PF08239 YP_002860380.1 identified by match to protein family HMM PF01797 YP_002860381.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002860382.1 identified by match to protein family HMM PF01797 YP_002860384.1 identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002860385.1 identified by match to protein family HMM PF01145 YP_002860391.1 identified by glimmer; putative YP_002860392.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002860393.1 identified by glimmer; putative YP_002860394.1 identified by glimmer; putative YP_002860395.1 identified by match to protein family HMM PF02661 YP_002860396.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_002860397.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002860398.1 identified by match to protein family HMM PF00877 YP_002860399.1 identified by glimmer; putative YP_002860400.1 identified by glimmer; putative YP_002860401.1 identified by glimmer; putative YP_002860402.1 identified by glimmer; putative YP_002860403.1 identified by match to protein family HMM PF01966 YP_002860404.1 identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397 YP_002860405.1 identified by glimmer; putative YP_002860406.1 identified by glimmer; putative YP_002860407.1 identified by match to protein family HMM PF06144 YP_002860408.1 identified by glimmer; putative YP_002860409.1 identified by glimmer; putative YP_002860411.1 identified by glimmer; putative YP_002860412.1 identified by glimmer; putative YP_002860413.1 identified by glimmer; putative YP_002860414.1 identified by glimmer; putative YP_002860415.1 identified by glimmer; putative YP_002860416.1 identified by glimmer; putative YP_002860417.1 identified by glimmer; putative YP_002860418.1 identified by glimmer; putative YP_002860419.1 identified by glimmer; putative YP_002860422.1 identified by match to protein family HMM PF01966 YP_002860425.1 identified by glimmer; putative YP_002860426.1 identified by glimmer; putative YP_002860428.1 identified by match to protein family HMM PF01807 YP_002860429.1 identified by glimmer; putative YP_002860430.1 identified by glimmer; putative YP_002860431.1 identified by glimmer; putative YP_002860432.1 identified by glimmer; putative YP_002860433.1 identified by glimmer; putative YP_002860436.1 identified by glimmer; putative YP_002860437.1 identified by glimmer; putative YP_002860438.1 identified by glimmer; putative YP_002860439.1 identified by glimmer; putative YP_002860440.1 identified by match to protein family HMM PF01742; match to protein family HMM PF07951; match to protein family HMM PF07952; match to protein family HMM PF07953 YP_002860441.1 identified by match to protein family HMM PF01742; match to protein family HMM PF07953; match to protein family HMM PF08470 YP_002860442.1 identified by match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR03209 YP_002860443.1 identified by similarity to SP:P46084; match to protein family HMM PF00652 YP_002860444.1 identified by match to protein family HMM PF05588 YP_002860445.1 identified by match to protein family HMM PF03505 YP_002860446.1 identified by glimmer; putative YP_002860447.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002860448.1 identified by glimmer; putative YP_002860449.1 identified by glimmer; putative YP_002860450.1 identified by match to protein family HMM PF03118 YP_002860451.1 identified by match to protein family HMM TIGR02844 YP_002860452.1 identified by glimmer; putative YP_002860453.1 identified by glimmer; putative YP_002860455.1 identified by glimmer; putative YP_002860456.1 identified by glimmer; putative YP_002860458.1 identified by match to protein family HMM PF06539 YP_002860459.1 identified by match to protein family HMM PF04012 YP_002860460.1 identified by glimmer; putative YP_002860461.1 identified by glimmer; putative YP_002860462.1 identified by glimmer; putative YP_002860463.1 identified by glimmer; putative YP_002860465.1 identified by glimmer; putative YP_002860466.1 identified by glimmer; putative YP_002860467.1 identified by glimmer; putative YP_002860468.1 identified by glimmer; putative YP_002860469.1 identified by glimmer; putative YP_002860471.1 identified by glimmer; putative YP_002860472.1 identified by glimmer; putative YP_002860474.1 identified by glimmer; putative YP_002860475.1 identified by glimmer; putative YP_002860477.1 identified by glimmer; putative YP_002860478.1 identified by match to protein family HMM PF04122 YP_002860479.1 identified by glimmer; putative YP_002860480.1 identified by glimmer; putative YP_002860481.1 identified by glimmer; putative YP_002860482.1 identified by glimmer; putative YP_002860484.1 identified by glimmer; putative YP_002860485.1 identified by glimmer; putative YP_002860486.1 identified by glimmer; putative YP_002860487.1 identified by glimmer; putative YP_002860489.1 identified by glimmer; putative YP_002860490.1 identified by glimmer; putative YP_002860491.1 identified by glimmer; putative YP_002860493.1 identified by match to protein family HMM PF01145 YP_002860494.1 identified by glimmer; putative YP_002860495.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_002860496.1 identified by match to protein family HMM PF03747 YP_002860498.1 identified by glimmer; putative YP_002860499.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF07728 YP_002860502.1 identified by glimmer; putative YP_002860503.1 identified by glimmer; putative YP_002860504.1 identified by glimmer; putative YP_002860505.1 identified by glimmer; putative YP_002860506.1 identified by glimmer; putative YP_002860507.1 identified by glimmer; putative YP_002860509.1 identified by glimmer; putative YP_002860510.1 identified by glimmer; putative YP_002860511.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796 YP_002860514.1 identified by glimmer; putative YP_002860515.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_002860516.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_002860517.1 identified by match to protein family HMM PF00575 YP_002860518.1 identified by match to protein family HMM PF01476 YP_002860519.1 identified by glimmer; putative YP_002860520.1 identified by match to protein family HMM PF02534 YP_002860521.1 identified by glimmer; putative YP_002860522.1 identified by glimmer; putative YP_002860523.1 identified by glimmer; putative YP_002860525.1 identified by match to protein family HMM PF01478 YP_002860526.1 identified by glimmer; putative YP_002860527.1 identified by glimmer; putative YP_002860528.1 identified by glimmer; putative YP_002860529.1 identified by glimmer; putative YP_002860530.1 identified by match to protein family HMM PF07811 YP_002860532.1 identified by glimmer; putative YP_002860533.1 identified by glimmer; putative YP_002860534.1 identified by match to protein family HMM PF00482 YP_002860535.1 identified by glimmer; putative YP_002860536.1 identified by match to protein family HMM PF00482 YP_002860538.1 identified by match to protein family HMM PF00437 YP_002860540.1 identified by match to protein family HMM PF08666 YP_002860542.1 identified by match to protein family HMM PF00877 YP_002860544.1 identified by glimmer; putative YP_002860546.1 identified by glimmer; putative YP_002860549.1 identified by glimmer; putative YP_002860551.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_002860552.1 identified by glimmer; putative YP_002860554.1 identified by glimmer; putative YP_002860556.1 identified by glimmer; putative YP_002860558.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002860559.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751 YP_002860560.1 identified by glimmer; putative YP_002860561.1 identified by glimmer; putative YP_002860562.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_002860563.1 identified by match to protein family HMM PF01336; match to protein family HMM PF01966 YP_002860564.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002860565.1 identified by glimmer; putative YP_002860567.1 identified by glimmer; putative YP_002860568.1 identified by glimmer; putative YP_002860569.1 identified by glimmer; putative YP_002860570.1 identified by glimmer; putative YP_002860571.1 identified by glimmer; putative YP_002860572.1 identified by glimmer; putative YP_002860573.1 identified by glimmer; putative YP_002860575.1 identified by glimmer; putative YP_002860576.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002860577.1 identified by match to protein family HMM PF02687 YP_002860578.1 identified by match to protein family HMM PF00005 YP_002860581.1 identified by match to protein family HMM PF00069 YP_002860583.1 identified by match to protein family HMM PF00078 YP_002860585.1 identified by glimmer; putative YP_002860586.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002860587.1 identified by glimmer; putative YP_002860588.1 identified by glimmer; putative YP_002860589.1 identified by glimmer; putative YP_002860590.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002860591.1 identified by glimmer; putative YP_002860592.1 identified by glimmer; putative YP_002860595.1 identified by glimmer; putative YP_002860596.1 identified by glimmer; putative YP_002860598.1 identified by glimmer; putative YP_002860599.1 identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550 YP_002860600.1 identified by glimmer; putative YP_002860602.1 identified by glimmer; putative YP_002860604.1 identified by glimmer; putative YP_002860605.1 identified by glimmer; putative YP_002860606.1 identified by glimmer; putative YP_002860608.1 identified by glimmer; putative YP_002860609.1 identified by glimmer; putative YP_002860610.1 identified by glimmer; putative YP_002860612.1 identified by glimmer; putative YP_002860613.1 identified by glimmer; putative YP_002860614.1 identified by glimmer; putative YP_002860615.1 identified by match to protein family HMM PF00580 YP_002860867.1 identified by glimmer; putative YP_002860870.1 identified by match to protein family HMM PF00239 YP_002860871.1 identified by match to protein family HMM PF07968 YP_002860872.1 identified by match to protein family HMM PF00589 YP_002860873.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_002860874.1 binds the polymerase to DNA and acts as a sliding clamp YP_002860875.1 identified by match to protein family HMM PF01479; match to protein family HMM TIGR02988 YP_002860876.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_002860878.1 negatively supercoils closed circular double-stranded DNA YP_002860879.1 negatively supercoils closed circular double-stranded DNA YP_002860881.1 identified by similarity to PDB:1J5Y_A; match to protein family HMM PF02829; match to protein family HMM PF08279 YP_002860882.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04015 YP_002860883.1 identified by match to protein family HMM PF03699 YP_002860884.1 identified by match to protein family HMM PF03734 YP_002860885.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_002860886.1 identified by match to protein family HMM PF07892 YP_002860887.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002860888.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_002860889.1 identified by match to protein family HMM PF03109 YP_002860892.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM PF06838; match to protein family HMM TIGR01328 YP_002860893.1 identified by match to protein family HMM PF00383 YP_002860894.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_002860895.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_002860896.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002860898.1 identified by similarity to SP:P24282; match to protein family HMM PF07441; match to protein family HMM TIGR02862 YP_002860899.1 Regulatory factor involved in maltose metabolism YP_002860900.1 identified by match to protein family HMM PF00293 YP_002860902.1 identified by match to protein family HMM PF00037 YP_002860904.1 identified by match to protein family HMM PF00899 YP_002860905.1 identified by match to protein family HMM PF07690 YP_002860906.1 identified by match to protein family HMM PF00583 YP_002860907.1 identified by match to protein family HMM PF03167 YP_002860908.1 identified by glimmer; putative YP_002860909.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002860911.1 identified by glimmer; putative YP_002860912.1 identified by match to protein family HMM PF00639 YP_002860913.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_002860914.1 identified by match to protein family HMM PF02016 YP_002860915.1 identified by match to protein family HMM PF01544 YP_002860919.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711 YP_002860920.1 identified by match to protein family HMM PF02223 YP_002860921.1 identified by match to protein family HMM PF06153 YP_002860922.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_002860923.1 identified by match to protein family HMM PF04468 YP_002860925.1 identified by match to protein family HMM PF00037 YP_002860927.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_002860928.1 identified by match to protein family HMM PF00877 YP_002860929.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_002860930.1 identified by match to protein family HMM PF08876 YP_002860931.1 identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078 YP_002860932.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_002860933.1 identified by glimmer; putative YP_002860934.1 identified by match to protein family HMM PF01522 YP_002860936.1 identified by similarity to SP:P35157; match to protein family HMM PF07670 YP_002860937.1 identified by similarity to SP:P35158; match to protein family HMM PF07670 YP_002860938.1 identified by glimmer; putative YP_002860939.1 identified by match to protein family HMM PF02687 YP_002860940.1 identified by match to protein family HMM PF02687 YP_002860941.1 identified by match to protein family HMM PF00005 YP_002860942.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002860943.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_002860944.1 identified by match to protein family HMM PF01047 YP_002860945.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002860946.1 identified by match to protein family HMM PF04286 YP_002860947.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_002860948.1 identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501 YP_002860949.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334 YP_002860950.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002860954.1 identified by match to protein family HMM TIGR01730 YP_002860955.1 identified by match to protein family HMM PF00005 YP_002860959.1 identified by glimmer; putative YP_002860960.1 identified by glimmer; putative YP_002860961.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002860962.1 identified by match to protein family HMM PF02308 YP_002860963.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002860964.1 identified by match to protein family HMM TIGR02491 YP_002860965.1 identified by glimmer; putative YP_002860967.1 identified by match to protein family HMM PF03551 YP_002860968.1 identified by similarity to PDB:1VJN_A YP_002860969.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_002860970.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002860972.1 identified by match to protein family HMM PF00483 YP_002860973.1 identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299 YP_002860974.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268 YP_002860976.1 identified by match to protein family HMM PF04055 YP_002860977.1 identified by similarity to SP:P94528; match to protein family HMM PF01547 YP_002860978.1 identified by similarity to GB:BAA07751.1; match to protein family HMM PF00534 YP_002860979.1 identified by match to protein family HMM TIGR02906 YP_002860980.1 identified by glimmer; putative YP_002860982.1 identified by match to protein family HMM TIGR02906 YP_002860983.1 identified by match to protein family HMM PF00534 YP_002860984.1 identified by similarity to SP:P46914; match to protein family HMM TIGR02906 YP_002860985.1 identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855 YP_002860986.1 identified by match to protein family HMM PF06257 YP_002860987.1 identified by match to protein family HMM PF01476 YP_002860988.1 identified by glimmer; putative YP_002860989.1 identified by match to protein family HMM PF03575; match to protein family HMM TIGR02069 YP_002860990.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_002860991.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_002860992.1 identified by glimmer; putative YP_002860993.1 identified by match to protein family HMM PF03323 YP_002860994.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002860995.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002860996.1 identified by match to protein family HMM PF09551; match to protein family HMM TIGR02837 YP_002860997.1 identified by match to protein family HMM PF04101; match to protein family HMM PF06925 YP_002860998.1 identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889 YP_002860999.1 identified by match to protein family HMM PF02568 YP_002861000.1 identified by match to protein family HMM PF09148 YP_002861002.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002861004.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002861005.1 identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105 YP_002861006.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_002861007.1 identified by match to protein family HMM PF07136 YP_002861008.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387; match to protein family HMM TIGR03534 YP_002861009.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002861011.1 identified by match to protein family HMM PF02535 YP_002861012.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_002861013.1 identified by match to protein family HMM PF01451 YP_002861014.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_002861015.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002861017.1 identified by match to protein family HMM PF00383 YP_002861018.1 identified by similarity to SP:O34753; match to protein family HMM PF00953 YP_002861019.1 identified by similarity to SP:P39131; match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_002861020.1 identified by similarity to GB:AAK72436.1 YP_002861021.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002861022.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_002861023.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel YP_002861024.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_002861025.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002861026.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002861027.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002861028.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_002861030.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002861031.1 identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870 YP_002861032.1 identified by match to protein family HMM PF01551 YP_002861033.1 identified by similarity to SP:P15281; match to protein family HMM TIGR02844 YP_002861034.1 identified by similarity to SP:P39751; match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904 YP_002861035.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_002861036.1 identified by match to protein family HMM PF01171 YP_002861037.1 identified by glimmer; putative YP_002861038.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002861039.1 identified by match to protein family HMM TIGR01448 YP_002861042.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_002861043.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002861044.1 identified by glimmer; putative YP_002861045.1 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA YP_002861046.1 identified by match to protein family HMM PF04389 YP_002861047.1 identified by match to protein family HMM PF00575; match to protein family HMM PF09371 YP_002861051.1 identified by match to protein family HMM PF00149 YP_002861052.1 identified by match to protein family HMM PF01022 YP_002861053.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF01206; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_002861055.1 identified by match to protein family HMM PF04607 YP_002861056.1 identified by glimmer; putative YP_002861057.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002861058.1 identified by match to protein family HMM PF00581 YP_002861060.1 identified by match to protein family HMM PF00226; match to protein family HMM PF07719 YP_002861062.1 identified by match to protein family HMM PF01928 YP_002861064.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859 YP_002861066.1 identified by match to protein family HMM PF04239 YP_002861067.1 identified by similarity to SP:O32033; match to protein family HMM PF00485 YP_002861068.1 identified by glimmer; putative YP_002861069.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_002861070.1 identified by match to protein family HMM PF00571 YP_002861071.1 similar to YegS from E. coli YP_002861073.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08497 YP_002861074.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03448; match to protein family HMM PF05239 YP_002861075.1 identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869 YP_002861076.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_002861077.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_002861078.1 identified by match to protein family HMM PF08331 YP_002861079.1 identified by similarity to GB:AAC46006.1; match to protein family HMM PF01553 YP_002861080.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_002861081.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949 YP_002861082.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00177; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_002861084.1 identified by match to protein family HMM PF05343 YP_002861085.1 identified by match to protein family HMM PF04294 YP_002861086.1 identified by match to protein family HMM PF04294; match to protein family HMM PF07501 YP_002861087.1 identified by similarity to SP:P37956; match to protein family HMM PF04055 YP_002861088.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_002861089.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002861090.1 identified by match to protein family HMM PF02608 YP_002861091.1 identified by match to protein family HMM PF00005 YP_002861092.1 identified by match to protein family HMM PF02653 YP_002861093.1 identified by match to protein family HMM PF02653 YP_002861094.1 identified by match to protein family HMM PF01522 YP_002861095.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_002861096.1 identified by similarity to SP:O32253; match to protein family HMM PF04198 YP_002861097.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002861098.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002861099.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002861100.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_002861101.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002861102.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_002861103.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_002861104.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_002861105.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_002861106.1 identified by match to protein family HMM PF00375 YP_002861107.1 identified by match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002861109.1 identified by similarity to GB:CAB71551.1; match to protein family HMM PF00282 YP_002861110.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_002861111.1 identified by similarity to SP:P81701; match to protein family HMM PF01569 YP_002861112.1 identified by match to protein family HMM PF07883 YP_002861113.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861114.1 identified by match to protein family HMM PF02518 YP_002861115.1 identified by match to protein family HMM PF00005 YP_002861116.1 identified by match to protein family HMM PF02687 YP_002861119.1 identified by similarity to SP:P25737; match to protein family HMM PF00324 YP_002861120.1 identified by match to protein family HMM PF00753 YP_002861121.1 identified by match to protein family HMM PF00132 YP_002861122.1 identified by match to protein family HMM PF00583 YP_002861123.1 identified by match to protein family HMM PF00383 YP_002861124.1 identified by match to protein family HMM PF00583 YP_002861125.1 3'-5' exonuclease of DNA polymerase III YP_002861126.1 identified by match to protein family HMM PF00857 YP_002861128.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839 YP_002861129.1 identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845 YP_002861130.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838 YP_002861131.1 identified by match to protein family HMM PF04239; match to protein family HMM PF07870 YP_002861132.1 identified by match to protein family HMM PF07870 YP_002861133.1 identified by match to protein family HMM PF07870 YP_002861134.1 identified by glimmer; putative YP_002861135.1 identified by match to protein family HMM PF02683 YP_002861136.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002861137.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861138.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002861140.1 identified by match to protein family HMM PF02056 YP_002861141.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378 YP_002861142.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002861143.1 identified by match to protein family HMM PF01380 YP_002861144.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_002861145.1 identified by glimmer; putative YP_002861146.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861147.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002861148.1 identified by match to protein family HMM PF00005 YP_002861149.1 identified by match to protein family HMM PF02687 YP_002861150.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_002861151.1 identified by similarity to SP:P54716; match to protein family HMM PF02056 YP_002861152.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_002861153.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002861155.1 identified by match to protein family HMM PF00313 YP_002861156.1 identified by match to protein family HMM PF06210 YP_002861157.1 identified by match to protein family HMM PF02082 YP_002861158.1 identified by match to protein family HMM PF01323 YP_002861159.1 identified by match to protein family HMM PF01073 YP_002861160.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002861161.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_002861162.1 identified by similarity to SP:P54716; match to protein family HMM PF02056 YP_002861163.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_002861164.1 identified by match to protein family HMM PF00920 YP_002861165.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_002861166.1 identified by match to protein family HMM PF00294 YP_002861167.1 identified by glimmer; putative YP_002861168.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178 YP_002861169.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861170.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002861171.1 identified by match to protein family HMM PF00535 YP_002861172.1 identified by match to protein family HMM PF04138 YP_002861173.1 identified by match to protein family HMM PF00165 YP_002861174.1 identified by match to protein family HMM PF01497 YP_002861175.1 identified by match to protein family HMM PF01032 YP_002861176.1 identified by match to protein family HMM PF00005 YP_002861177.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002861178.1 identified by match to protein family HMM PF00165 YP_002861179.1 identified by match to protein family HMM PF01497 YP_002861180.1 identified by match to protein family HMM PF00165 YP_002861181.1 identified by match to protein family HMM PF01497 YP_002861182.1 identified by match to protein family HMM PF01032 YP_002861183.1 identified by match to protein family HMM PF01032 YP_002861184.1 identified by match to protein family HMM PF00005 YP_002861185.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002861186.1 identified by match to protein family HMM PF01325 YP_002861187.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_002861188.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_002861189.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861190.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002861191.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002861192.1 identified by match to protein family HMM PF00005 YP_002861193.1 identified by match to protein family HMM PF02687 YP_002861194.1 identified by match to protein family HMM PF03788 YP_002861195.1 identified by match to protein family HMM PF04172 YP_002861196.1 identified by match to protein family HMM PF00665 YP_002861199.1 identified by match to protein family HMM PF04055 YP_002861200.1 identified by match to protein family HMM PF08903 YP_002861203.1 identified by match to protein family HMM PF04647 YP_002861205.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00254 YP_002861206.1 identified by match to protein family HMM PF00583 YP_002861208.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_002861210.1 identified by match to protein family HMM PF04647 YP_002861211.1 identified by glimmer; putative YP_002861212.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_002861213.1 identified by match to protein family HMM PF01171 YP_002861214.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002861215.1 identified by match to protein family HMM PF00324 YP_002861216.1 identified by match to protein family HMM PF00557 YP_002861217.1 identified by match to protein family HMM PF00171; match to protein family HMM PF00465 YP_002861222.1 identified by match to protein family HMM PF01569 YP_002861223.1 identified by match to protein family HMM PF01522 YP_002861224.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861225.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002861227.1 identified by match to protein family HMM PF06962 YP_002861228.1 identified by match to protein family HMM PF09335 YP_002861229.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM PF05228; match to protein family HMM TIGR00254 YP_002861231.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002861232.1 identified by match to protein family HMM PF01966 YP_002861233.1 identified by match to protein family HMM PF00999 YP_002861234.1 identified by match to protein family HMM PF00266 YP_002861235.1 identified by match to protein family HMM PF03601 YP_002861237.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861238.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002861239.1 identified by match to protein family HMM PF00474 YP_002861240.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945 YP_002861241.1 identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946 YP_002861242.1 identified by match to protein family HMM PF04205; match to protein family HMM TIGR01947 YP_002861243.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_002861244.1 identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943 YP_002861245.1 involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate YP_002861246.1 identified by match to protein family HMM PF04122 YP_002861247.1 identified by match to protein family HMM PF07456 YP_002861248.1 identified by match to protein family HMM PF07009 YP_002861249.1 identified by match to protein family HMM PF02424 YP_002861250.1 identified by match to protein family HMM PF04122 YP_002861251.1 identified by match to protein family HMM PF04122; match to protein family HMM PF04151 YP_002861252.1 identified by glimmer; putative YP_002861253.1 identified by match to protein family HMM PF04122 YP_002861254.1 identified by glimmer; putative YP_002861255.1 identified by match to protein family HMM PF04122 YP_002861260.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002861261.1 identified by match to protein family HMM PF00005 YP_002861263.1 identified by match to protein family HMM PF00324 YP_002861264.1 identified by match to protein family HMM PF09580; match to protein family HMM TIGR02898 YP_002861266.1 identified by match to protein family HMM PF01863 YP_002861267.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_002861269.1 identified by match to protein family HMM PF01475 YP_002861271.1 identified by match to protein family HMM PF01966 YP_002861272.1 identified by match to protein family HMM PF01694 YP_002861273.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002861274.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_002861275.1 identified by match to protein family HMM PF06803 YP_002861276.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_002861277.1 identified by glimmer; putative YP_002861278.1 identified by match to protein family HMM PF00515; match to protein family HMM PF01381 YP_002861279.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002861281.1 identified by glimmer; putative YP_002861282.1 identified by match to protein family HMM PF01965 YP_002861284.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346 YP_002861285.1 identified by match to protein family HMM PF07685 YP_002861286.1 identified by match to protein family HMM PF08245; match to protein family HMM PF08353 YP_002861287.1 identified by match to protein family HMM PF01238 YP_002861289.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002861290.1 identified by glimmer; putative YP_002861291.1 identified by match to protein family HMM PF00753 YP_002861292.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_002861293.1 identified by match to protein family HMM PF00682 YP_002861294.1 Catalyzes the conversion of citrate to isocitrate YP_002861295.1 identified by match to protein family HMM PF00180 YP_002861296.1 identified by match to protein family HMM PF00005 YP_002861297.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03606 YP_002861298.1 identified by match to protein family HMM PF04070 YP_002861299.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_002861300.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_002861301.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_002861302.1 identified by match to protein family HMM TIGR02773 YP_002861304.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002861306.1 identified by match to protein family HMM PF00440 YP_002861307.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_002861308.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002861309.1 identified by match to protein family HMM PF01155 YP_002861311.1 identified by glimmer; putative YP_002861313.1 identified by similarity to SP:P23478; match to protein family HMM PF00580; match to protein family HMM TIGR02785 YP_002861314.1 identified by match to protein family HMM PF00015 YP_002861315.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_002861316.1 identified by match to protein family HMM PF01734 YP_002861317.1 identified by match to protein family HMM PF00753 YP_002861318.1 identified by match to protein family HMM PF00903 YP_002861319.1 identified by glimmer; putative YP_002861321.1 identified by match to protein family HMM PF01381 YP_002861322.1 identified by match to protein family HMM PF04122 YP_002861323.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002861324.1 identified by match to protein family HMM PF00497 YP_002861325.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002861326.1 identified by match to protein family HMM PF00563; match to protein family HMM PF08668 YP_002861327.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_002861328.1 identified by match to protein family HMM PF02110; match to protein family HMM TIGR00694 YP_002861329.1 identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097 YP_002861330.1 identified by glimmer; putative YP_002861331.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002861332.1 identified by match to protein family HMM PF01094 YP_002861333.1 identified by match to protein family HMM PF02653 YP_002861334.1 identified by match to protein family HMM PF02653 YP_002861335.1 identified by match to protein family HMM PF00005 YP_002861336.1 identified by match to protein family HMM PF00005 YP_002861337.1 identified by match to protein family HMM PF02596 YP_002861338.1 identified by match to protein family HMM PF06738 YP_002861340.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002861341.1 identified by match to protein family HMM PF04011 YP_002861342.1 identified by match to protein family HMM PF04536 YP_002861343.1 identified by match to protein family HMM PF04536 YP_002861344.1 identified by match to protein family HMM PF00293 YP_002861345.1 identified by glimmer; putative YP_002861347.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002861350.1 identified by similarity to SP:P13457; match to protein family HMM PF00149; match to protein family HMM TIGR00619 YP_002861351.1 identified by similarity to SP:P13458; match to protein family HMM PF02463 YP_002861352.1 identified by match to protein family HMM PF00293 YP_002861353.1 identified by match to protein family HMM PF02588 YP_002861354.1 identified by match to protein family HMM PF01022 YP_002861355.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_002861361.1 identified by glimmer; putative YP_002861362.1 identified by match to protein family HMM PF02562 YP_002861365.1 identified by match to protein family HMM PF00665 YP_002861367.1 identified by match to protein family HMM TIGR03602 YP_002861368.1 identified by similarity to GB:AAN16972.1 YP_002861370.1 identified by match to protein family HMM PF02624 YP_002861371.1 identified by match to protein family HMM PF02517 YP_002861373.1 identified by similarity to GB:AAN16977.1; match to protein family HMM PF00005 YP_002861374.1 identified by match to protein family HMM PF01061 YP_002861375.1 identified by match to protein family HMM PF01061 YP_002861376.1 identified by match to protein family HMM PF02163 YP_002861377.1 identified by glimmer; putative YP_002861378.1 identified by match to protein family HMM PF02040; match to protein family HMM PF03600 YP_002861380.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_002861382.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_002861383.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002861384.1 identified by match to protein family HMM PF00072 YP_002861385.1 identified by match to protein family HMM PF00877; match to protein family HMM PF05257; match to protein family HMM PF06347; match to protein family HMM PF08239 YP_002861386.1 identified by match to protein family HMM PF00561 YP_002861387.1 identified by match to protein family HMM PF00072 YP_002861388.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_002861389.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002861390.1 identified by match to protein family HMM PF00072 YP_002861391.1 identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 YP_002861392.1 identified by match to protein family HMM PF06733 YP_002861394.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02080 YP_002861395.1 identified by match to protein family HMM PF01262 YP_002861396.1 identified by match to protein family HMM PF06874 YP_002861397.1 identified by glimmer; putative YP_002861398.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_002861399.1 identified by glimmer; putative YP_002861400.1 identified by glimmer; putative YP_002861401.1 identified by match to protein family HMM PF02777 YP_002861402.1 identified by match to protein family HMM PF00753 YP_002861406.1 identified by match to protein family HMM PF01037 YP_002861408.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_002861409.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_002861410.1 identified by match to protein family HMM PF00132 YP_002861411.1 identified by match to protein family HMM PF00753 YP_002861412.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517 YP_002861413.1 identified by match to protein family HMM PF02417 YP_002861414.1 identified by match to protein family HMM PF02417 YP_002861415.1 identified by match to protein family HMM PF02452 YP_002861416.1 identified by match to protein family HMM PF03885 YP_002861417.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002861418.1 identified by match to protein family HMM PF01957 YP_002861419.1 identified by match to protein family HMM PF01145 YP_002861422.1 identified by match to protein family HMM PF00557; match to protein family HMM PF05195 YP_002861425.1 identified by match to protein family HMM PF00583 YP_002861426.1 identified by match to protein family HMM PF00583 YP_002861427.1 identified by match to protein family HMM PF04324 YP_002861430.1 identified by glimmer; putative YP_002861434.1 identified by match to protein family HMM PF02554 YP_002861436.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002861437.1 identified by match to protein family HMM PF00005 YP_002861438.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220 YP_002861439.1 identified by match to protein family HMM PF09515; match to protein family HMM TIGR02357 YP_002861441.1 identified by glimmer; putative YP_002861442.1 identified by match to protein family HMM PF02810 YP_002861443.1 identified by match to protein family HMM PF00392 YP_002861444.1 identified by match to protein family HMM PF00005 YP_002861446.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002861447.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187 YP_002861448.1 identified by similarity to SP:P0AFK4; match to protein family HMM PF00528 YP_002861449.1 identified by similarity to SP:P0AFK6; similarity to SP:P0AFK9; match to protein family HMM PF00528; match to protein family HMM PF01547 YP_002861450.1 identified by match to protein family HMM PF03551 YP_002861452.1 identified by match to protein family HMM PF00165 YP_002861453.1 identified by similarity to SP:P24943; match to protein family HMM PF00375 YP_002861454.1 identified by glimmer; putative YP_002861455.1 identified by glimmer; putative YP_002861457.1 identified by glimmer; putative YP_002861458.1 identified by match to protein family HMM PF01471; match to protein family HMM PF08924 YP_002861461.1 identified by match to protein family HMM PF02517 YP_002861462.1 identified by match to protein family HMM PF00805 YP_002861463.1 identified by match to protein family HMM PF01588 YP_002861464.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002861465.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002861466.1 identified by glimmer; putative YP_002861467.1 identified by glimmer; putative YP_002861468.1 identified by glimmer; putative YP_002861469.1 identified by match to protein family HMM PF04055 YP_002861470.1 identified by glimmer; putative YP_002861472.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463 YP_002861474.1 identified by match to protein family HMM PF00583 YP_002861475.1 identified by match to protein family HMM PF02687 YP_002861476.1 identified by match to protein family HMM PF00005 YP_002861477.1 identified by match to protein family HMM PF00583 YP_002861480.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002861482.1 identified by match to protein family HMM PF00884 YP_002861483.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_002861484.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804 YP_002861485.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002861486.1 identified by glimmer; putative YP_002861487.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002861490.1 identified by match to protein family HMM PF02557 YP_002861491.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861492.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002861493.1 identified by match to protein family HMM PF00005; match to protein family HMM PF04397 YP_002861495.1 identified by match to protein family HMM PF01061 YP_002861497.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08664 YP_002861498.1 identified by match to protein family HMM PF02518 YP_002861499.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_002861500.1 identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002861501.1 identified by glimmer; putative YP_002861502.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002861503.1 identified by match to protein family HMM PF00302 YP_002861504.1 identified by match to protein family HMM PF00440 YP_002861505.1 identified by match to protein family HMM PF00583 YP_002861506.1 identified by similarity to SP:P37584; match to protein family HMM PF01588; match to protein family HMM TIGR02222 YP_002861507.1 identified by match to protein family HMM PF00165 YP_002861508.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002861509.1 identified by match to protein family HMM TIGR00277 YP_002861510.1 identified by glimmer; putative YP_002861511.1 identified by match to protein family HMM PF00903 YP_002861512.1 identified by match to protein family HMM PF00488 YP_002861513.1 identified by match to protein family HMM PF08538 YP_002861515.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002861516.1 identified by match to protein family HMM PF02915 YP_002861517.1 identified by match to protein family HMM PF01047 YP_002861518.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002861520.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002861521.1 identified by match to protein family HMM PF08011 YP_002861523.1 identified by similarity to SP:P0AFY2; match to protein family HMM PF02698 YP_002861524.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_002861525.1 identified by match to protein family HMM PF00293 YP_002861527.1 identified by similarity to SP:P39805; match to protein family HMM PF00874; match to protein family HMM PF03123 YP_002861528.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995 YP_002861529.1 identified by match to protein family HMM PF02811 YP_002861530.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_002861531.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_002861532.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04405; match to protein family HMM TIGR03652 YP_002861533.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04282 YP_002861535.1 identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210 YP_002861538.1 identified by match to protein family HMM PF00753 YP_002861540.1 identified by match to protein family HMM PF02653 YP_002861541.1 identified by match to protein family HMM PF00005 YP_002861542.1 identified by match to protein family HMM PF04392 YP_002861544.1 identified by match to protein family HMM PF01207 YP_002861545.1 identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462 YP_002861547.1 identified by match to protein family HMM PF02384 YP_002861548.1 identified by match to protein family HMM PF01420 YP_002861549.1 identified by glimmer; putative YP_002861553.1 identified by glimmer; putative YP_002861554.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851 YP_002861556.1 identified by glimmer; putative YP_002861557.1 identified by match to protein family HMM PF00165 YP_002861558.1 identified by match to protein family HMM PF01497 YP_002861559.1 identified by match to protein family HMM PF01497 YP_002861560.1 identified by similarity to SP:P49936; match to protein family HMM PF01032 YP_002861561.1 identified by similarity to SP:P49937; match to protein family HMM PF01032 YP_002861562.1 identified by similarity to SP:P49938; match to protein family HMM PF00005 YP_002861563.1 identified by match to protein family HMM PF00142 YP_002861564.1 identified by glimmer; putative YP_002861565.1 identified by glimmer; putative YP_002861566.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002861569.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_002861570.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_002861571.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_002861572.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_002861573.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_002861574.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_002861577.1 identified by match to protein family HMM PF00376 YP_002861578.1 identified by match to protein family HMM PF00005 YP_002861579.1 identified by match to protein family HMM PF01061 YP_002861580.1 identified by match to protein family HMM PF00892 YP_002861583.1 identified by match to protein family HMM PF00583 YP_002861584.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545 YP_002861585.1 identified by match to protein family HMM PF00015 YP_002861587.1 identified by match to protein family HMM PF00005 YP_002861588.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002861589.1 identified by match to protein family HMM PF01965 YP_002861590.1 identified by glimmer; putative YP_002861591.1 identified by match to protein family HMM PF00291 YP_002861592.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_002861593.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01053; match to protein family HMM PF01212 YP_002861594.1 identified by match to protein family HMM PF01209; match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002861596.1 identified by match to protein family HMM PF01638 YP_002861597.1 identified by match to protein family HMM PF04909 YP_002861598.1 identified by match to protein family HMM PF00403 YP_002861600.1 identified by match to protein family HMM PF06172 YP_002861601.1 identified by glimmer; putative YP_002861602.1 identified by match to protein family HMM PF01381 YP_002861603.1 identified by match to protein family HMM PF01381 YP_002861604.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002861605.1 identified by match to protein family HMM TIGR02937 YP_002861607.1 identified by glimmer; putative YP_002861610.1 identified by similarity to SP:Q01257; match to protein family HMM PF01451 YP_002861611.1 identified by similarity to SP:Q01256; match to protein family HMM PF01022 YP_002861613.1 identified by match to protein family HMM PF00300 YP_002861615.1 identified by match to protein family HMM PF00005 YP_002861618.1 identified by match to protein family HMM PF00303 YP_002861619.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002861620.1 identified by similarity to SP:P45741 YP_002861621.1 identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097 YP_002861623.1 identified by match to protein family HMM PF06695 YP_002861624.1 identified by match to protein family HMM PF00005 YP_002861626.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861627.1 identified by match to protein family HMM PF00005 YP_002861629.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002861630.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002861633.1 identified by match to protein family HMM PF00005 YP_002861634.1 identified by match to protein family HMM PF02687 YP_002861635.1 identified by glimmer; putative YP_002861636.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861637.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002861638.1 identified by match to protein family HMM PF06555 YP_002861639.1 identified by match to protein family HMM PF01497 YP_002861640.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032 YP_002861641.1 identified by match to protein family HMM PF01032 YP_002861642.1 identified by match to protein family HMM PF00005 YP_002861643.1 identified by match to protein family HMM TIGR02861 YP_002861645.1 identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 YP_002861646.1 identified by match to protein family HMM PF00581 YP_002861647.1 identified by glimmer; putative YP_002861648.1 identified by glimmer; putative YP_002861649.1 identified by match to protein family HMM PF00144 YP_002861650.1 identified by match to protein family HMM PF01381 YP_002861651.1 identified by match to protein family HMM PF00589 YP_002861652.1 identified by match to protein family HMM PF00903 YP_002861654.1 identified by glimmer; putative YP_002861655.1 identified by match to protein family HMM PF01979 YP_002861656.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002861657.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00496 YP_002861658.1 identified by match to protein family HMM PF04023 YP_002861659.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231 YP_002861660.1 identified by match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670 YP_002861661.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162 YP_002861662.1 identified by match to protein family HMM PF04294; match to protein family HMM PF07501 YP_002861663.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_002861667.1 identified by match to protein family HMM PF07875 YP_002861669.1 identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367 YP_002861670.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_002861672.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_002861673.1 identified by match to protein family HMM PF00011 YP_002861674.1 identified by match to protein family HMM PF00376; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002861675.1 identified by match to protein family HMM PF01041 YP_002861676.1 identified by match to protein family HMM PF01041 YP_002861678.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02954 YP_002861679.1 identified by glimmer; putative YP_002861681.1 identified by similarity to GB:CAA50581.1; match to protein family HMM PF01243 YP_002861683.1 identified by match to protein family HMM PF00005 YP_002861684.1 identified by match to protein family HMM PF01381 YP_002861686.1 identified by match to protein family HMM PF00561 YP_002861687.1 identified by match to protein family HMM PF00583 YP_002861688.1 identified by match to protein family HMM PF00805 YP_002861689.1 identified by match to protein family HMM PF02525 YP_002861690.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002861691.1 identified by match to protein family HMM PF01022 YP_002861692.1 identified by match to protein family HMM PF00583 YP_002861694.1 identified by match to protein family HMM PF04229 YP_002861695.1 identified by match to protein family HMM PF00583 YP_002861696.1 identified by match to protein family HMM PF02678 YP_002861697.1 identified by match to protein family HMM PF01638 YP_002861699.1 identified by similarity to GB:AAF40217.1 YP_002861700.1 identified by match to protein family HMM PF00190; match to protein family HMM PF07883; match to protein family HMM TIGR03404 YP_002861701.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_002861702.1 identified by match to protein family HMM PF04657 YP_002861703.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002861704.1 identified by match to protein family HMM PF00583 YP_002861706.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002861708.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002861709.1 identified by match to protein family HMM PF01872 YP_002861714.1 identified by match to protein family HMM PF00583 YP_002861715.1 identified by match to protein family HMM PF01638 YP_002861717.1 identified by match to protein family HMM PF01327 YP_002861718.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002861719.1 identified by match to protein family HMM PF00881 YP_002861722.1 identified by glimmer; putative YP_002861723.1 identified by glimmer; putative YP_002861725.1 identified by match to protein family HMM PF00165 YP_002861726.1 identified by glimmer; putative YP_002861727.1 identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445 YP_002861728.1 identified by match to protein family HMM PF01381 YP_002861730.1 identified by match to protein family HMM PF06445 YP_002861731.1 identified by match to protein family HMM PF06555 YP_002861732.1 identified by glimmer; putative YP_002861737.1 identified by match to protein family HMM PF04371 YP_002861740.1 identified by glimmer; putative YP_002861741.1 identified by match to protein family HMM PF04229 YP_002861742.1 identified by match to protein family HMM PF03734 YP_002861743.1 identified by glimmer; putative YP_002861744.1 identified by glimmer; putative YP_002861748.1 identified by match to protein family HMM PF00665 YP_002861749.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02687 YP_002861750.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861751.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002861752.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002861753.1 identified by match to protein family HMM PF02632 YP_002861754.1 identified by match to protein family HMM PF04199 YP_002861755.1 identified by match to protein family HMM PF00583 YP_002861756.1 identified by match to protein family HMM PF00717 YP_002861757.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP YP_002861759.1 identified by similarity to SP:P0A4T9; match to protein family HMM PF00376; match to protein family HMM PF07739 YP_002861760.1 identified by glimmer; putative YP_002861761.1 identified by glimmer; putative YP_002861762.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_002861763.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_002861764.1 identified by match to protein family HMM PF00155 YP_002861765.1 catalyzes the ATP-dependent transport of cobalt YP_002861766.1 identified by match to protein family HMM PF02553; match to protein family HMM TIGR01165 YP_002861767.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454 YP_002861768.1 catalyzes the formation of siroheme from precorrin-2 YP_002861769.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_002861770.1 identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469 YP_002861772.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_002861773.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_002861774.1 identified by glimmer; putative YP_002861775.1 catalyzes the interconversion of precorrin-8X and cobyrinic acid YP_002861778.1 identified by match to protein family HMM PF01966 YP_002861779.1 identified by match to protein family HMM PF00376 YP_002861780.1 identified by match to protein family HMM PF00583 YP_002861781.1 identified by match to protein family HMM PF00881 YP_002861782.1 identified by glimmer; putative YP_002861783.1 identified by match to protein family HMM PF04229 YP_002861784.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_002861785.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467 YP_002861786.1 identified by glimmer; putative YP_002861787.1 identified by match to protein family HMM TIGR02469 YP_002861792.1 identified by match to protein family HMM PF00583 YP_002861794.1 catalyzes the formation of precorrin-3A from precorrin-2 YP_002861795.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_002861796.1 identified by match to protein family HMM PF01890 YP_002861797.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466 YP_002861798.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_002861800.1 identified by glimmer; putative YP_002861801.1 identified by match to protein family HMM PF01903; match to protein family HMM PF06180 YP_002861802.1 identified by match to protein family HMM PF00288 YP_002861803.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_002861804.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_002861805.1 identified by match to protein family HMM PF01226 YP_002861806.1 identified by match to protein family HMM TIGR02910 YP_002861807.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide YP_002861808.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912 YP_002861809.1 identified by match to protein family HMM PF00994 YP_002861811.1 identified by match to protein family HMM PF00005 YP_002861813.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861814.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002861815.1 identified by match to protein family HMM PF00005 YP_002861816.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032; match to protein family HMM PF02653 YP_002861817.1 identified by match to protein family HMM PF01497 YP_002861818.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_002861819.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_002861820.1 identified by match to protein family HMM PF00165 YP_002861821.1 identified by match to protein family HMM PF00583 YP_002861822.1 identified by match to protein family HMM PF00583 YP_002861823.1 identified by match to protein family HMM PF07081 YP_002861824.1 identified by match to protein family HMM PF00248 YP_002861825.1 identified by match to protein family HMM PF04993 YP_002861826.1 identified by match to protein family HMM PF00583 YP_002861829.1 identified by match to protein family HMM PF04892 YP_002861830.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002861831.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861832.1 identified by match to protein family HMM PF02557 YP_002861833.1 catalyzes the formation of inosine from adenosine YP_002861834.1 identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_002861835.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_002861838.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_002861839.1 identified by match to protein family HMM PF02915 YP_002861840.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002861841.1 identified by match to protein family HMM PF00072 YP_002861842.1 identified by match to protein family HMM PF07656 YP_002861843.1 identified by glimmer; putative YP_002861845.1 identified by match to protein family HMM PF04055 YP_002861846.1 identified by match to protein family HMM PF00004 YP_002861847.1 identified by glimmer; putative YP_002861848.1 identified by match to protein family HMM PF02652; match to protein family HMM PF03553; match to protein family HMM TIGR00795 YP_002861850.1 identified by match to protein family HMM PF01012 YP_002861851.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_002861852.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_002861855.1 identified by match to protein family HMM PF01047 YP_002861856.1 identified by match to protein family HMM PF04199 YP_002861857.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002861858.1 identified by match to protein family HMM PF04199 YP_002861859.1 identified by match to protein family HMM PF01047 YP_002861860.1 identified by match to protein family HMM PF00376; match to protein family HMM PF06445 YP_002861861.1 identified by match to protein family HMM PF03483 YP_002861862.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002861863.1 identified by match to protein family HMM PF06695 YP_002861865.1 identified by match to protein family HMM PF01066 YP_002861866.1 identified by match to protein family HMM PF00440 YP_002861868.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254 YP_002861869.1 identified by match to protein family HMM PF00027 YP_002861870.1 identified by match to protein family HMM PF01965 YP_002861871.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002861874.1 identified by similarity to SP:P0AEL3; match to protein family HMM PF04023 YP_002861875.1 identified by similarity to SP:P33650; match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437 YP_002861876.1 identified by glimmer; putative YP_002861877.1 identified by match to protein family HMM PF00583 YP_002861878.1 identified by match to protein family HMM PF02557 YP_002861879.1 identified by match to protein family HMM TIGR03090 YP_002861880.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861881.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002861882.1 identified by glimmer; putative YP_002861884.1 identified by glimmer; putative YP_002861885.1 identified by match to protein family HMM PF00067 YP_002861886.1 identified by match to protein family HMM PF00403; match to protein family HMM PF02683 YP_002861887.1 identified by glimmer; putative YP_002861889.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002861890.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002861892.1 identified by match to protein family HMM PF00165 YP_002861893.1 identified by match to protein family HMM PF01032 YP_002861894.1 identified by match to protein family HMM PF01032 YP_002861895.1 identified by match to protein family HMM PF00005 YP_002861896.1 identified by match to protein family HMM PF01497 YP_002861898.1 identified by match to protein family HMM PF00165 YP_002861899.1 identified by match to protein family HMM PF00005 YP_002861901.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002861903.1 identified by glimmer; putative YP_002861904.1 identified by glimmer; putative YP_002861906.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_002861907.1 identified by match to protein family HMM PF03190 YP_002861908.1 identified by match to protein family HMM PF06081 YP_002861910.1 identified by match to protein family HMM PF02517 YP_002861911.1 identified by match to protein family HMM PF00753 YP_002861912.1 identified by match to protein family HMM PF00005 YP_002861913.1 identified by match to protein family HMM PF07670 YP_002861914.1 identified by match to protein family HMM PF03960 YP_002861916.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_002861917.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002861918.1 identified by match to protein family HMM PF07892 YP_002861919.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881 YP_002861920.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002861921.1 associated with arginine deiminase pathway genes; probably functions in arginine catabolism YP_002861922.1 identified by match to protein family HMM PF00571 YP_002861923.1 identified by glimmer; putative YP_002861924.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650 YP_002861925.1 identified by match to protein family HMM PF04023 YP_002861926.1 identified by match to protein family HMM PF07238 YP_002861927.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_002861928.1 identified by match to protein family HMM PF02839 YP_002861929.1 identified by match to protein family HMM PF00583 YP_002861930.1 identified by match to protein family HMM PF00005; match to protein family HMM PF09383 YP_002861931.1 identified by match to protein family HMM PF00528 YP_002861932.1 identified by match to protein family HMM PF03180 YP_002861933.1 identified by match to protein family HMM PF03180 YP_002861934.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002861937.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002861938.1 identified by match to protein family HMM PF02588 YP_002861940.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002861941.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002861942.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_002861944.1 identified by match to protein family HMM PF01966 YP_002861945.1 identified by match to protein family HMM PF00171 YP_002861946.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002861947.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002861948.1 identified by match to protein family HMM PF01047 YP_002861949.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002861953.1 identified by match to protein family HMM PF00528 YP_002861954.1 identified by match to protein family HMM PF00528 YP_002861955.1 identified by match to protein family HMM PF00005 YP_002861957.1 identified by match to protein family HMM PF00583 YP_002861959.1 identified by glimmer; putative YP_002861960.1 identified by match to protein family HMM PF03956 YP_002861961.1 identified by glimmer; putative YP_002861962.1 identified by similarity to SP:P77791; match to protein family HMM PF00132 YP_002861963.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121 YP_002861965.1 identified by match to protein family HMM PF00571 YP_002861966.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002861969.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_002861970.1 identified by match to protein family HMM PF00266 YP_002861971.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002861972.1 identified by match to protein family HMM PF06245 YP_002861973.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_002861974.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002861975.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_002861976.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02080 YP_002861978.1 identified by similarity to SP:P21369; match to protein family HMM PF00857 YP_002861979.1 identified by match to protein family HMM PF00581 YP_002861982.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002861983.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_002861985.1 identified by match to protein family HMM PF00581 YP_002861986.1 identified by glimmer; putative YP_002861987.1 identified by match to protein family HMM PF01594 YP_002861988.1 identified by match to protein family HMM PF03819 YP_002861990.1 identified by glimmer; putative YP_002861991.1 identified by glimmer; putative YP_002861992.1 identified by match to protein family HMM PF01547 YP_002861993.1 identified by match to protein family HMM PF00528 YP_002861994.1 identified by match to protein family HMM PF00005 YP_002861998.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002861999.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_002862000.1 identified by match to protein family HMM PF09021 YP_002862001.1 identified by match to protein family HMM PF04392 YP_002862002.1 identified by match to protein family HMM PF02653 YP_002862003.1 identified by match to protein family HMM PF00005 YP_002862004.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002862005.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151; match to protein family HMM PF08449 YP_002862006.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08279 YP_002862007.1 identified by match to protein family HMM PF04227 YP_002862008.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745 YP_002862009.1 identified by similarity to SP:Q49135; match to protein family HMM PF04961 YP_002862010.1 identified by similarity to SP:P54382; match to protein family HMM PF00763; match to protein family HMM PF02882 YP_002862011.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002862012.1 identified by match to protein family HMM PF00583 YP_002862013.1 identified by glimmer; putative YP_002862015.1 identified by match to protein family HMM PF02535 YP_002862016.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002862017.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_002862018.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002862019.1 identified by match to protein family HMM PF00497 YP_002862020.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212 YP_002862021.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268 YP_002862023.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002862025.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002862026.1 identified by match to protein family HMM PF02518 YP_002862027.1 identified by match to protein family HMM PF00005 YP_002862029.1 identified by match to protein family HMM PF03009 YP_002862031.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 YP_002862032.1 identified by match to protein family HMM PF08922 YP_002862033.1 identified by match to protein family HMM PF02696 YP_002862034.1 identified by match to protein family HMM PF01593 YP_002862035.1 identified by match to protein family HMM PF00165; match to protein family HMM PF07883 YP_002862036.1 identified by match to protein family HMM PF02055 YP_002862037.1 identified by match to protein family HMM PF00480 YP_002862038.1 identified by match to protein family HMM PF00232 YP_002862039.1 identified by similarity to SP:P19584; match to protein family HMM PF00686; match to protein family HMM PF01373 YP_002862040.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002862041.1 identified by match to protein family HMM PF00392 YP_002862042.1 identified by match to protein family HMM PF00005 YP_002862045.1 identified by glimmer; putative YP_002862048.1 identified by match to protein family HMM PF00704; match to protein family HMM PF01476; match to protein family HMM PF08239 YP_002862049.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002862050.1 identified by glimmer; putative YP_002862051.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_002862052.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_002862053.1 identified by match to protein family HMM PF00015 YP_002862054.1 identified by glimmer; putative YP_002862055.1 identified by glimmer; putative YP_002862057.1 identified by match to protein family HMM PF01244 YP_002862059.1 identified by match to protein family HMM PF02687 YP_002862061.1 identified by match to protein family HMM PF00005 YP_002862062.1 identified by match to protein family HMM PF00528 YP_002862063.1 identified by match to protein family HMM PF00528 YP_002862064.1 identified by match to protein family HMM PF00496 YP_002862066.1 identified by similarity to SP:Q45537 YP_002862067.1 identified by similarity to SP:Q45538; match to protein family HMM PF05067 YP_002862070.1 identified by match to protein family HMM PF04525 YP_002862071.1 identified by glimmer; putative YP_002862072.1 identified by match to protein family HMM PF00692 YP_002862073.1 identified by match to protein family HMM TIGR02861 YP_002862076.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002862078.1 identified by glimmer; putative YP_002862079.1 identified by match to protein family HMM PF00440 YP_002862080.1 identified by glimmer; putative YP_002862084.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002862085.1 identified by glimmer; putative YP_002862087.1 identified by match to protein family HMM PF01381 YP_002862091.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196 YP_002862092.1 identified by similarity to SP:Q59931; match to protein family HMM PF00171 YP_002862093.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_002862095.1 identified by match to protein family HMM PF09338 YP_002862096.1 Selenoprotein. identified by similarity to GB:CAB38127.2; match to protein family HMM PF07355; match to protein family HMM TIGR01918 YP_002862097.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_002862098.1 identified by match to protein family HMM PF00085 YP_002862101.1 identified by similarity to SP:P54935; match to protein family HMM PF08545 YP_002862102.1 identified by match to protein family HMM PF02504 YP_002862103.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_002862104.1 identified by match to protein family HMM PF07669 YP_002862105.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway YP_002862106.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway YP_002862107.1 identified by match to protein family HMM PF00005 YP_002862108.1 identified by match to protein family HMM PF02653 YP_002862110.1 identified by match to protein family HMM PF00532 YP_002862111.1 identified by match to protein family HMM PF00596 YP_002862112.1 identified by match to protein family HMM PF00392; match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002862116.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002862117.1 identified by match to protein family HMM PF04239 YP_002862123.1 identified by glimmer; putative YP_002862124.1 identified by match to protein family HMM PF09579 YP_002862128.1 putative molybdenum cofactor-binding protein; participates in purine salvage YP_002862129.1 FAD-binding subunit; with XdhA and XdhC participates in purine salvage YP_002862130.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_002862131.1 identified by similarity to SP:O34598; match to protein family HMM PF00383 YP_002862132.1 decatenates replicating daughter chromosomes YP_002862133.1 identified by match to protein family HMM PF02659 YP_002862135.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_002862136.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002862137.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002862138.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002862140.1 identified by match to protein family HMM PF00535 YP_002862144.1 identified by match to protein family HMM PF02583 YP_002862145.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_002862146.1 identified by match to protein family HMM PF00403 YP_002862147.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002862148.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002862149.1 identified by match to protein family HMM PF02517 YP_002862150.1 identified by match to protein family HMM PF02579 YP_002862151.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002862152.1 identified by similarity to GB:CAA50578.1; match to protein family HMM PF01243 YP_002862153.1 identified by match to protein family HMM PF00589 YP_002862154.1 identified by match to protein family HMM PF06114 YP_002862155.1 identified by match to protein family HMM PF01381 YP_002862164.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714 YP_002862168.1 identified by glimmer; putative YP_002862169.1 identified by glimmer; putative YP_002862170.1 identified by glimmer; putative YP_002862171.1 identified by glimmer; putative YP_002862173.1 identified by match to protein family HMM PF01555 YP_002862174.1 identified by glimmer; putative YP_002862176.1 identified by glimmer; putative YP_002862177.1 identified by glimmer; putative YP_002862178.1 identified by glimmer; putative YP_002862179.1 identified by glimmer; putative YP_002862183.1 identified by glimmer; putative YP_002862184.1 identified by glimmer; putative YP_002862186.1 identified by match to protein family HMM PF00589 YP_002862187.1 identified by match to protein family HMM PF01844 YP_002862189.1 identified by match to protein family HMM PF03354 YP_002862190.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_002862191.1 identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543 YP_002862194.1 identified by match to protein family HMM TIGR01563 YP_002862195.1 identified by match to protein family HMM PF08890 YP_002862196.1 identified by glimmer; putative YP_002862200.1 identified by similarity to SP:P54332; match to protein family HMM PF09393 YP_002862201.1 identified by match to protein family HMM TIGR01760 YP_002862204.1 identified by glimmer; putative YP_002862206.1 identified by match to protein family HMM PF04865 YP_002862209.1 identified by glimmer; putative YP_002862210.1 identified by glimmer; putative YP_002862213.1 identified by match to protein family HMM PF01183 YP_002862214.1 identified by glimmer; putative YP_002862216.1 identified by glimmer; putative YP_002862219.1 identified by glimmer; putative YP_002862221.1 identified by match to protein family HMM PF01230 YP_002862223.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_002862224.1 identified by match to protein family HMM PF07907 YP_002862225.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_002862226.1 identified by match to protein family HMM PF02386 YP_002862227.1 identified by glimmer; putative YP_002862228.1 identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573 YP_002862229.1 identified by match to protein family HMM PF07853 YP_002862230.1 identified by match to protein family HMM PF00392 YP_002862231.1 identified by similarity to SP:P51591; match to protein family HMM PF00301; match to protein family HMM PF02915 YP_002862232.1 identified by match to protein family HMM PF04122 YP_002862233.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002 YP_002862234.1 identified by match to protein family HMM PF01255 YP_002862236.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002862237.1 identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702 YP_002862238.1 identified by match to protein family HMM PF00037 YP_002862239.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002862242.1 identified by match to protein family HMM PF00005 YP_002862244.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_002862245.1 identified by match to protein family HMM PF07690 YP_002862246.1 identified by match to protein family HMM PF01497 YP_002862247.1 identified by match to protein family HMM PF01032 YP_002862248.1 identified by match to protein family HMM PF00005 YP_002862250.1 identified by match to protein family HMM PF00037 YP_002862251.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002862252.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_002862253.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378 YP_002862254.1 identified by match to protein family HMM PF05913 YP_002862255.1 identified by match to protein family HMM PF06445 YP_002862256.1 identified by match to protein family HMM PF04055 YP_002862257.1 identified by match to protein family HMM PF06475 YP_002862258.1 identified by match to protein family HMM PF06555 YP_002862261.1 identified by glimmer; putative YP_002862263.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002862264.1 identified by match to protein family HMM PF00496 YP_002862265.1 identified by match to protein family HMM PF00528 YP_002862266.1 identified by match to protein family HMM PF00528 YP_002862268.1 identified by match to protein family HMM PF00950 YP_002862269.1 identified by match to protein family HMM PF00005 YP_002862270.1 identified by match to protein family HMM PF01297 YP_002862272.1 identified by match to protein family HMM PF00271 YP_002862273.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002862275.1 identified by match to protein family HMM PF00528 YP_002862276.1 identified by match to protein family HMM PF00005 YP_002862277.1 identified by match to protein family HMM PF01475 YP_002862278.1 identified by match to protein family HMM PF02001 YP_002862279.1 identified by match to protein family HMM PF00246; match to protein family HMM PF01471; match to protein family HMM PF01476 YP_002862280.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_002862281.1 identified by match to protein family HMM PF08000 YP_002862282.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002862283.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_002862284.1 identified by match to protein family HMM PF00005 YP_002862285.1 identified by match to protein family HMM PF01061 YP_002862286.1 identified by match to protein family HMM PF01061 YP_002862288.1 identified by match to protein family HMM PF00881 YP_002862290.1 identified by similarity to SP:Q45096; match to protein family HMM PF00313 YP_002862291.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_002862292.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002862293.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_002862294.1 identified by match to protein family HMM PF01625 YP_002862295.1 identified by match to protein family HMM PF00005 YP_002862296.1 identified by match to protein family HMM PF02687 YP_002862298.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002862299.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002862300.1 identified by match to protein family HMM PF00005 YP_002862304.1 identified by match to protein family HMM PF00155 YP_002862306.1 identified by match to protein family HMM PF00005 YP_002862307.1 identified by match to protein family HMM PF00665 YP_002862309.1 identified by match to protein family HMM PF01381 YP_002862310.1 identified by match to protein family HMM PF00768 YP_002862311.1 identified by match to protein family HMM PF00293 YP_002862313.1 identified by similarity to SP:Q04944; match to protein family HMM PF00465 YP_002862314.1 identified by glimmer; putative YP_002862315.1 identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808 YP_002862316.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_002862317.1 identified by match to protein family HMM PF00497 YP_002862318.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002862320.1 identified by similarity to SP:Q53727; match to protein family HMM PF00580 YP_002862321.1 identified by glimmer; putative YP_002862322.1 identified by match to protein family HMM PF02491 YP_002862323.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002862324.1 identified by match to protein family HMM PF01520 YP_002862325.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_002862326.1 identified by similarity to SP:Q00758; match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002862327.1 identified by similarity to SP:Q00758; match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR02900 YP_002862330.1 identified by match to protein family HMM PF00465 YP_002862331.1 identified by match to protein family HMM PF05362 YP_002862332.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_002862333.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_002862334.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_002862335.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_002862336.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413 YP_002862337.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 YP_002862338.1 catalyzes the formation of oxaloacetate from L-aspartate YP_002862339.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_002862340.1 identified by glimmer; putative YP_002862341.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_002862342.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002862343.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_002862344.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_002862346.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214 YP_002862347.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_002862348.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_002862349.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002862350.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615 YP_002862351.1 identified by match to protein family HMM PF08478 YP_002862352.1 identified by match to protein family HMM PF05949 YP_002862353.1 identified by match to protein family HMM PF06947 YP_002862354.1 identified by match to protein family HMM PF05949 YP_002862355.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_002862356.1 identified by match to protein family HMM PF04472 YP_002862357.1 identified by match to protein family HMM PF02325 YP_002862358.1 identified by match to protein family HMM PF01479 YP_002862359.1 identified by similarity to GB:AAB49279.1; match to protein family HMM PF05103; match to protein family HMM TIGR03544 YP_002862360.1 identified by match to protein family HMM PF01761; match to protein family HMM TIGR01357 YP_002862361.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_002862362.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_002862363.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002862364.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02890 YP_002862365.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002862366.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_002862367.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_002862368.1 identified by similarity to SP:P41006; match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_002862369.1 identified by glimmer; putative YP_002862370.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_002862371.1 identified by match to protein family HMM PF01170 YP_002862372.1 identified by glimmer; putative YP_002862373.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_002862374.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141 YP_002862375.1 identified by match to protein family HMM PF00005 YP_002862377.1 identified by match to protein family HMM PF01734 YP_002862379.1 identified by match to protein family HMM PF01208 YP_002862380.1 identified by match to protein family HMM PF03553 YP_002862381.1 identified by match to protein family HMM PF00111 YP_002862382.1 identified by match to protein family HMM PF02492 YP_002862383.1 identified by similarity to GB:AAC44214.1 YP_002862384.1 identified by similarity to SP:O93657; match to protein family HMM PF02310; match to protein family HMM PF02607 YP_002862385.1 catalyze the formation of methyl-coenzyme M from methylcobalamin and coenzyme M YP_002862387.1 identified by match to protein family HMM PF01208 YP_002862388.1 identified by match to protein family HMM PF00005; match to protein family HMM PF09383 YP_002862389.1 identified by match to protein family HMM PF00528 YP_002862390.1 identified by match to protein family HMM PF03180 YP_002862391.1 identified by match to protein family HMM PF02493 YP_002862392.1 identified by match to protein family HMM PF00724 YP_002862393.1 catalyzes the formation of asparagine from aspartate and ammonia YP_002862394.1 identified by match to protein family HMM PF00355; match to protein family HMM PF01266 YP_002862395.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751 YP_002862396.1 identified by match to protein family HMM PF00488 YP_002862397.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248 YP_002862398.1 identified by match to protein family HMM PF04073 YP_002862400.1 identified by match to protein family HMM PF00005 YP_002862401.1 identified by match to protein family HMM PF00528 YP_002862402.1 identified by match to protein family HMM PF00528 YP_002862403.1 identified by match to protein family HMM PF01547 YP_002862404.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771 YP_002862405.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002862406.1 identified by match to protein family HMM PF09719; match to protein family HMM TIGR01909 YP_002862407.1 identified by match to protein family HMM PF03595 YP_002862408.1 identified by glimmer; putative YP_002862409.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002862410.1 identified by match to protein family HMM PF03860 YP_002862411.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002862412.1 identified by glimmer; putative YP_002862413.1 identified by match to protein family HMM PF07485 YP_002862414.1 identified by similarity to GB:BAB16890.1; match to protein family HMM PF00041; match to protein family HMM PF00704 YP_002862415.1 identified by glimmer; putative YP_002862417.1 identified by match to protein family HMM PF01638 YP_002862419.1 identified by match to protein family HMM PF00903 YP_002862420.1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated YP_002862421.1 identified by match to protein family HMM PF00165; match to protein family HMM PF09370 YP_002862422.1 identified by match to protein family HMM PF06792 YP_002862423.1 identified by match to protein family HMM PF09370 YP_002862424.1 identified by match to protein family HMM PF01381 YP_002862425.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002862426.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002862427.1 identified by match to protein family HMM PF01325 YP_002862429.1 identified by match to protein family HMM PF00165 YP_002862430.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002862431.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002862433.1 identified by match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277 YP_002862435.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002862436.1 identified by match to protein family HMM PF00903 YP_002862437.1 identified by match to protein family HMM PF04657 YP_002862439.1 identified by match to protein family HMM PF00027 YP_002862440.1 identified by match to protein family HMM PF00005 YP_002862441.1 identified by match to protein family HMM PF01061 YP_002862442.1 identified by match to protein family HMM PF01061 YP_002862443.1 identified by match to protein family HMM PF00196 YP_002862444.1 identified by match to protein family HMM PF06445 YP_002862445.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002862446.1 identified by match to protein family HMM PF03323 YP_002862447.1 identified by match to protein family HMM PF06050 YP_002862448.1 identified by similarity to PDB:1HUX_A; similarity to GB:AAL18809.1; match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002862449.1 identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367 YP_002862450.1 identified by match to protein family HMM PF04055 YP_002862451.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_002862452.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_002862453.1 identified by match to protein family HMM PF00015 YP_002862454.1 identified by match to protein family HMM PF06161 YP_002862455.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_002862456.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_002862457.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_002862458.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_002862459.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002862460.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_002862461.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_002862462.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_002862463.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002862464.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002862465.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_002862467.1 identified by match to protein family HMM PF04143 YP_002862468.1 identified by match to protein family HMM PF01206 YP_002862469.1 identified by match to protein family HMM PF04143 YP_002862470.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002862471.1 identified by match to protein family HMM PF01235 YP_002862472.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_002862473.1 identified by match to protein family HMM PF04143 YP_002862474.1 identified by similarity to GB:AAF99691.1; match to protein family HMM PF00005 YP_002862477.1 identified by similarity to SP:P33112; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002862478.1 identified by similarity to SP:P33113; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002862479.1 identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078 YP_002862480.1 identified by match to protein family HMM PF00324 YP_002862481.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_002862482.1 identified by match to protein family HMM PF08876 YP_002862484.1 identified by match to protein family HMM PF01966 YP_002862485.1 identified by glimmer; putative YP_002862486.1 identified by glimmer; putative YP_002862487.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; match to protein family HMM PF08455 YP_002862488.1 identified by match to protein family HMM PF04607 YP_002862489.1 identified by match to protein family HMM PF00665 YP_002862492.1 identified by match to protein family HMM PF00165 YP_002862493.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002862494.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463 YP_002862495.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002862496.1 identified by similarity to SP:P54495; match to protein family HMM PF00480 YP_002862497.1 identified by match to protein family HMM PF00128 YP_002862498.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003 YP_002862499.1 identified by match to protein family HMM PF03372 YP_002862500.1 identified by match to protein family HMM TIGR02840 YP_002862504.1 identified by glimmer; putative YP_002862505.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002862506.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002862507.1 identified by glimmer; putative YP_002862508.1 identified by match to protein family HMM PF07690 YP_002862510.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002862511.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002862513.1 identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002862515.1 identified by similarity to GB:BAA77453.1; match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453 YP_002862516.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_002862517.1 identified by match to protein family HMM PF02965 YP_002862518.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607 YP_002862521.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954 YP_002862522.1 identified by match to protein family HMM PF09585; match to protein family HMM TIGR02058 YP_002862523.1 identified by match to protein family HMM PF00676 YP_002862524.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002862525.1 identified by glimmer; putative YP_002862526.1 identified by similarity to GB:AAA21747.1; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_002862527.1 identified by similarity to GB:AAA21748.1; match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_002862528.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_002862529.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_002862530.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069 YP_002862531.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002862532.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_002862533.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive YP_002862534.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002862535.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR00229 YP_002862536.1 identified by similarity to SP:P13604; match to protein family HMM PF00465 YP_002862537.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970 YP_002862538.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_002862539.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_002862540.1 identified by match to protein family HMM PF00805 YP_002862541.1 identified by glimmer; putative YP_002862542.1 identified by match to protein family HMM PF02368 YP_002862543.1 identified by glimmer; putative YP_002862548.1 identified by match to protein family HMM PF00589 YP_002862549.1 identified by match to protein family HMM PF06114 YP_002862550.1 identified by match to protein family HMM PF01381 YP_002862551.1 identified by match to protein family HMM PF01381 YP_002862553.1 identified by match to protein family HMM PF02498; match to protein family HMM PF03374 YP_002862554.1 identified by glimmer; putative YP_002862555.1 identified by glimmer; putative YP_002862558.1 identified by glimmer; putative YP_002862559.1 identified by glimmer; putative YP_002862560.1 identified by glimmer; putative YP_002862561.1 identified by match to protein family HMM PF07211 YP_002862562.1 identified by match to protein family HMM PF04404 YP_002862564.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714 YP_002862566.1 identified by glimmer; putative YP_002862568.1 identified by glimmer; putative YP_002862569.1 identified by match to protein family HMM PF05869 YP_002862570.1 identified by glimmer; putative YP_002862571.1 identified by glimmer; putative YP_002862572.1 identified by glimmer; putative YP_002862573.1 identified by glimmer; putative YP_002862574.1 identified by glimmer; putative YP_002862576.1 identified by glimmer; putative YP_002862577.1 identified by glimmer; putative YP_002862578.1 identified by glimmer; putative YP_002862579.1 identified by glimmer; putative YP_002862581.1 identified by glimmer; putative YP_002862582.1 identified by match to protein family HMM PF05866 YP_002862583.1 identified by match to protein family HMM PF09643; match to protein family HMM TIGR01671 YP_002862584.1 identified by match to protein family HMM PF09643; match to protein family HMM TIGR01671 YP_002862586.1 identified by glimmer; putative YP_002862587.1 identified by glimmer; putative YP_002862588.1 identified by glimmer; putative YP_002862589.1 identified by glimmer; putative YP_002862590.1 identified by glimmer; putative YP_002862592.1 identified by glimmer; putative YP_002862593.1 identified by glimmer; putative YP_002862594.1 identified by glimmer; putative YP_002862595.1 identified by match to protein family HMM PF03592 YP_002862596.1 identified by match to protein family HMM PF04466; match to protein family HMM TIGR01547 YP_002862597.1 identified by match to protein family HMM PF05133; match to protein family HMM TIGR01538 YP_002862598.1 identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641 YP_002862603.1 identified by similarity to GB:CAA61868.1; match to protein family HMM PF06810 YP_002862605.1 identified by glimmer; putative YP_002862609.1 identified by glimmer; putative YP_002862611.1 identified by match to protein family HMM PF09393 YP_002862613.1 identified by glimmer; putative YP_002862616.1 identified by match to protein family HMM PF01476 YP_002862620.1 identified by match to protein family HMM PF04865 YP_002862623.1 identified by glimmer; putative YP_002862624.1 identified by glimmer; putative YP_002862625.1 identified by glimmer; putative YP_002862626.1 identified by glimmer; putative YP_002862629.1 identified by match to protein family HMM PF01520; match to protein family HMM PF08239 YP_002862630.1 identified by glimmer; putative YP_002862631.1 identified by glimmer; putative YP_002862636.1 identified by match to protein family HMM PF01814 YP_002862637.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_002862638.1 identified by match to protein family HMM PF00015 YP_002862639.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002862640.1 identified by match to protein family HMM PF06161 YP_002862641.1 identified by match to protein family HMM PF00106 YP_002862642.1 identified by match to protein family HMM PF07656 YP_002862644.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455 YP_002862645.1 identified by match to protein family HMM PF01980; match to protein family HMM TIGR00104 YP_002862646.1 identified by match to protein family HMM PF02663 YP_002862647.1 identified by match to protein family HMM PF00496 YP_002862648.1 identified by match to protein family HMM PF00528 YP_002862649.1 identified by match to protein family HMM PF00528 YP_002862650.1 identified by match to protein family HMM PF00005 YP_002862651.1 identified by match to protein family HMM PF00589 YP_002862652.1 identified by match to protein family HMM PF01381 YP_002862653.1 identified by match to protein family HMM PF01381 YP_002862654.1 identified by match to protein family HMM PF01381 YP_002862655.1 identified by match to protein family HMM PF09669; match to protein family HMM TIGR02681 YP_002862658.1 identified by glimmer; putative YP_002862661.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714 YP_002862663.1 identified by glimmer; putative YP_002862665.1 identified by glimmer; putative YP_002862666.1 identified by glimmer; putative YP_002862667.1 identified by glimmer; putative YP_002862668.1 identified by glimmer; putative YP_002862670.1 identified by glimmer; putative YP_002862671.1 identified by glimmer; putative YP_002862672.1 identified by glimmer; putative YP_002862674.1 identified by glimmer; putative YP_002862679.1 identified by glimmer; putative YP_002862680.1 identified by glimmer; putative YP_002862681.1 identified by glimmer; putative YP_002862682.1 identified by glimmer; putative YP_002862684.1 identified by match to protein family HMM PF00589 YP_002862686.1 identified by match to protein family HMM PF01844 YP_002862687.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558 YP_002862688.1 identified by match to protein family HMM PF03354 YP_002862689.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_002862690.1 identified by match to protein family HMM PF00574 YP_002862691.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554 YP_002862692.1 identified by match to protein family HMM PF05135; match to protein family HMM TIGR01560 YP_002862693.1 identified by glimmer; putative YP_002862695.1 identified by glimmer; putative YP_002862696.1 identified by glimmer; putative YP_002862698.1 identified by match to protein family HMM PF09393 YP_002862699.1 identified by glimmer; putative YP_002862701.1 identified by glimmer; putative YP_002862702.1 identified by glimmer; putative YP_002862703.1 identified by glimmer; putative YP_002862706.1 identified by glimmer; putative YP_002862707.1 identified by glimmer; putative YP_002862708.1 identified by glimmer; putative YP_002862709.1 identified by glimmer; putative YP_002862710.1 identified by similarity to SP:P15936 YP_002862712.1 identified by match to protein family HMM PF01520; match to protein family HMM PF08239 YP_002862713.1 identified by glimmer; putative YP_002862714.1 identified by glimmer; putative YP_002862716.1 identified by glimmer; putative YP_002862719.1 identified by match to protein family HMM PF00005 YP_002862720.1 identified by match to protein family HMM PF00929 YP_002862721.1 identified by match to protein family HMM PF06207 YP_002862722.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002862723.1 identified by match to protein family HMM PF00011 YP_002862724.1 identified by match to protein family HMM PF07690 YP_002862725.1 identified by match to protein family HMM PF00440 YP_002862727.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_002862728.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002862729.1 identified by glimmer; putative YP_002862732.1 identified by glimmer; putative YP_002862733.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08543 YP_002862734.1 identified by match to protein family HMM PF00188; match to protein family HMM PF01476; match to protein family HMM TIGR02899 YP_002862735.1 identified by glimmer; putative YP_002862736.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002862737.1 identified by match to protein family HMM PF00005 YP_002862738.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460 YP_002862739.1 identified by glimmer; putative YP_002862740.1 identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584 YP_002862741.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002862742.1 identified by match to protein family HMM PF00575 YP_002862743.1 identified by similarity to SP:P42305; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_002862744.1 identified by glimmer; putative YP_002862745.1 identified by match to protein family HMM PF00560; match to protein family HMM PF07532 YP_002862746.1 identified by match to protein family HMM PF01832 YP_002862747.1 identified by match to protein family HMM PF00210 YP_002862748.1 identified by similarity to SP:P24072; match to protein family HMM PF00072; match to protein family HMM PF04509 YP_002862749.1 identified by similarity to GB:AAC33470.1; match to protein family HMM PF04509 YP_002862750.1 identified by match to protein family HMM PF07670 YP_002862751.1 identified by match to protein family HMM PF00269 YP_002862752.1 identified by match to protein family HMM PF00269 YP_002862753.1 Selenoprotein. identified by match to protein family HMM TIGR01911 YP_002862754.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002862756.1 Represses a number of genes involved in the response to DNA damage YP_002862757.1 identified by match to protein family HMM PF01053; match to protein family HMM PF06838 YP_002862758.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_002862759.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002862760.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_002862761.1 This protein performs the mismatch recognition step during the DNA repair process YP_002862762.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002862763.1 identified by match to protein family HMM PF00155 YP_002862765.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002862766.1 identified by match to protein family HMM PF00583 YP_002862767.1 identified by match to protein family HMM TIGR02906 YP_002862768.1 these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_002862769.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_002862770.1 identified by match to protein family HMM PF07736; match to protein family HMM TIGR01796 YP_002862771.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_002862772.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812 YP_002862773.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002862774.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002862776.1 identified by match to protein family HMM PF06354 YP_002862777.1 identified by match to protein family HMM PF00535 YP_002862778.1 identified by glimmer; putative YP_002862779.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002862780.1 identified by match to protein family HMM PF02683 YP_002862781.1 identified by match to protein family HMM PF00085 YP_002862782.1 identified by match to protein family HMM PF00795 YP_002862783.1 identified by glimmer; putative YP_002862784.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080 YP_002862785.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_002862786.1 identified by match to protein family HMM PF00583 YP_002862788.1 identified by match to protein family HMM PF01906 YP_002862789.1 identified by glimmer; putative YP_002862791.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229 YP_002862792.1 identified by match to protein family HMM PF07228 YP_002862793.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229 YP_002862794.1 identified by match to protein family HMM PF02769 YP_002862797.1 identified by match to protein family HMM PF05857 YP_002862801.1 identified by glimmer; putative YP_002862802.1 identified by match to protein family HMM PF00005 YP_002862803.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512 YP_002862804.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512 YP_002862805.1 identified by match to protein family HMM PF01257 YP_002862806.1 identified by match to protein family HMM PF00999 YP_002862807.1 identified by match to protein family HMM PF03747 YP_002862808.1 identified by match to protein family HMM PF01594 YP_002862809.1 identified by match to protein family HMM PF00768 YP_002862811.1 identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874 YP_002862812.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer YP_002862813.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB YP_002862814.1 identified by match to protein family HMM PF01743 YP_002862815.1 identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002862817.1 identified by match to protein family HMM PF03372 YP_002862819.1 identified by similarity to SP:P39142; match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644 YP_002862820.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_002862821.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225 YP_002862823.1 identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831 YP_002862824.1 identified by glimmer; putative YP_002862825.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052 YP_002862826.1 identified by match to protein family HMM PF00324 YP_002862827.1 identified by match to protein family HMM PF00877 YP_002862828.1 identified by glimmer; putative YP_002862830.1 identified by glimmer; putative YP_002862833.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01520 YP_002862837.1 identified by glimmer; putative YP_002862838.1 identified by match to protein family HMM PF02899 YP_002862839.1 identified by similarity to SP:P06534; match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875 YP_002862840.1 identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860 YP_002862841.1 identified by match to protein family HMM PF04204; match to protein family HMM TIGR01001 YP_002862842.1 identified by match to protein family HMM PF00742; match to protein family HMM PF03447 YP_002862843.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_002862844.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_002862845.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_002862846.1 identified by match to protein family HMM PF01513 YP_002862847.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_002862848.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_002862850.1 identified by similarity to SP:Q08291; match to protein family HMM PF00348 YP_002862851.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_002862852.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002862853.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_002862854.1 identified by similarity to SP:Q2FEV0; match to protein family HMM PF03780 YP_002862855.1 identified by similarity to SP:P49785 YP_002862856.1 identified by similarity to SP:P49784; match to protein family HMM TIGR02830 YP_002862857.1 identified by similarity to SP:P49783; match to protein family HMM PF09581; match to protein family HMM TIGR02896 YP_002862858.1 identified by similarity to SP:P49782; match to protein family HMM PF09546; match to protein family HMM TIGR02829 YP_002862859.1 identified by similarity to SP:P49781; match to protein family HMM PF09555; match to protein family HMM TIGR02849 YP_002862860.1 identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848 YP_002862861.1 necessary for complete engulfment of forespore YP_002862862.1 identified by similarity to SP:Q01367; match to protein family HMM TIGR02858 YP_002862864.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002862865.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_002862866.1 identified by match to protein family HMM PF01202 YP_002862868.1 identified by glimmer; putative YP_002862871.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002862872.1 identified by match to protein family HMM TIGR02532 YP_002862874.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002862876.1 identified by glimmer; putative YP_002862880.1 identified by glimmer; putative YP_002862881.1 identified by glimmer; putative YP_002862882.1 identified by glimmer; putative YP_002862883.1 identified by glimmer; putative YP_002862884.1 identified by glimmer; putative YP_002862885.1 identified by match to protein family HMM PF00069 YP_002862888.1 identified by match to protein family HMM PF00589 YP_002862889.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002862890.1 identified by match to protein family HMM PF00482 YP_002862891.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157 YP_002862892.1 identified by glimmer; putative YP_002862894.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_002862895.1 identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833 YP_002862896.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002862897.1 identified by glimmer; putative YP_002862898.1 identified by match to protein family HMM PF01230 YP_002862899.1 identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788 YP_002862900.1 identified by glimmer; putative YP_002862901.1 identified by similarity to SP:P39214; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002862902.1 identified by similarity to SP:P09870; match to protein family HMM PF03415; match to protein family HMM TIGR02806 YP_002862904.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002862905.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002862906.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_002862907.1 identified by match to protein family HMM PF00072 YP_002862908.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002862909.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002862912.1 identified by match to protein family HMM PF00005 YP_002862913.1 identified by glimmer; putative YP_002862914.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002862915.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002862916.1 identified by match to protein family HMM PF01047 YP_002862917.1 identified by match to protein family HMM PF00583 YP_002862918.1 identified by match to protein family HMM PF00899 YP_002862919.1 identified by match to protein family HMM PF02597 YP_002862920.1 identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730 YP_002862921.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR00229 YP_002862922.1 identified by match to protein family HMM PF03473 YP_002862923.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_002862924.1 identified by similarity to SP:Q9NZB8; match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_002862925.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_002862926.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_002862927.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_002862928.1 identified by match to protein family HMM PF00005 YP_002862929.1 identified by match to protein family HMM PF00528 YP_002862930.1 identified by similarity to GB:CAC40782.1; match to protein family HMM PF01547 YP_002862931.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002862933.1 identified by match to protein family HMM PF09335 YP_002862934.1 identified by match to protein family HMM PF00005 YP_002862935.1 identified by match to protein family HMM PF02687 YP_002862936.1 identified by glimmer; putative YP_002862937.1 identified by match to protein family HMM PF00561 YP_002862938.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002862939.1 identified by match to protein family HMM PF00005 YP_002862940.1 identified by match to protein family HMM PF00376 YP_002862941.1 identified by match to protein family HMM PF03358 YP_002862942.1 identified by match to protein family HMM PF00560 YP_002862943.1 identified by match to protein family HMM PF02839; match to protein family HMM TIGR03296 YP_002862944.1 identified by match to protein family HMM PF00158; match to protein family HMM PF07728 YP_002862946.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_002862948.1 identified by match to protein family HMM PF00375 YP_002862949.1 identified by match to protein family HMM PF00155 YP_002862950.1 identified by match to protein family HMM PF06354 YP_002862951.1 identified by match to protein family HMM PF00560 YP_002862952.1 identified by match to protein family HMM TIGR03296 YP_002862953.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002862954.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002862955.1 identified by match to protein family HMM PF02596 YP_002862956.1 identified by match to protein family HMM PF02361 YP_002862957.1 identified by match to protein family HMM PF00005 YP_002862959.1 identified by match to protein family HMM PF01168 YP_002862961.1 identified by match to protein family HMM PF03323 YP_002862962.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002862963.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002862964.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002862965.1 identified by match to protein family HMM PF09719; match to protein family HMM TIGR01909 YP_002862966.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_002862967.1 identified by match to protein family HMM PF04055 YP_002862968.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002862969.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_002862970.1 molecular chaperone YP_002862971.1 identified by match to protein family HMM PF00488 YP_002862972.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR01992 YP_002862973.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403 YP_002862974.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404 YP_002862975.1 identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427 YP_002862976.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_002862977.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway YP_002862978.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002862980.1 identified by match to protein family HMM PF01042 YP_002862981.1 identified by match to protein family HMM PF04055 YP_002862982.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_002862983.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002862985.1 identified by match to protein family HMM PF01168 YP_002862987.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002862988.1 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis YP_002862989.1 identified by match to protein family HMM PF00860 YP_002862990.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002862991.1 identified by match to protein family HMM PF06354 YP_002862992.1 identified by match to protein family HMM PF00158 YP_002862993.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002862994.1 identified by match to protein family HMM PF00188; match to protein family HMM TIGR02909 YP_002862995.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002862996.1 identified by match to protein family HMM PF00892 YP_002862997.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002862998.1 identified by match to protein family HMM PF00005 YP_002863002.1 identified by match to protein family HMM PF00266 YP_002863003.1 identified by match to protein family HMM PF00302 YP_002863006.1 identified by glimmer; putative YP_002863009.1 identified by match to protein family HMM PF00005 YP_002863010.1 identified by glimmer; putative YP_002863011.1 identified by glimmer; putative YP_002863012.1 identified by glimmer; putative YP_002863015.1 identified by match to protein family HMM PF04055 YP_002863016.1 identified by glimmer; putative YP_002863018.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002863019.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002863020.1 identified by similarity to SP:P81535; match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002863021.1 identified by similarity to SP:P46544; match to protein family HMM PF00561; match to protein family HMM TIGR01250 YP_002863022.1 identified by match to protein family HMM PF00665 YP_002863023.1 identified by match to protein family HMM PF01527 YP_002863024.1 identified by glimmer; putative YP_002863025.1 identified by match to protein family HMM PF00209 YP_002863026.1 identified by glimmer; putative YP_002863027.1 identified by glimmer; putative YP_002863029.1 identified by match to protein family HMM PF00881 YP_002863030.1 identified by glimmer; putative YP_002863031.1 identified by glimmer; putative YP_002863033.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_002863034.1 identified by match to protein family HMM PF00440 YP_002863037.1 identified by glimmer; putative YP_002863038.1 identified by glimmer; putative YP_002863039.1 identified by glimmer; putative YP_002863040.1 identified by match to protein family HMM PF00132 YP_002863041.1 identified by match to protein family HMM PF01041 YP_002863042.1 identified by glimmer; putative YP_002863043.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01208 YP_002863044.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_002863048.1 identified by glimmer; putative YP_002863049.1 identified by similarity to GB:AAF40217.1 YP_002863050.1 identified by match to protein family HMM PF04892 YP_002863051.1 Catalyzes the deamination of cytosine to uracil and ammonia YP_002863052.1 identified by similarity to SP:P0AA82; match to protein family HMM PF02133 YP_002863053.1 identified by glimmer; putative YP_002863054.1 identified by match to protein family HMM PF04055 YP_002863055.1 identified by glimmer; putative YP_002863057.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271 YP_002863058.1 identified by match to protein family HMM PF06634 YP_002863061.1 identified by glimmer; putative YP_002863062.1 identified by glimmer; putative YP_002863063.1 identified by glimmer; putative YP_002863064.1 identified by match to protein family HMM PF03551 YP_002863066.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002863067.1 identified by match to protein family HMM PF00535 YP_002863068.1 identified by match to protein family HMM PF00534; match to protein family HMM PF00535 YP_002863069.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002863071.1 identified by glimmer; putative YP_002863072.1 identified by glimmer; putative YP_002863073.1 identified by glimmer; putative YP_002863074.1 identified by glimmer; putative YP_002863075.1 identified by glimmer; putative YP_002863079.1 identified by match to protein family HMM PF02839; match to protein family HMM PF03272 YP_002863080.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_002863081.1 identified by match to protein family HMM PF02583 YP_002863082.1 identified by match to protein family HMM PF00936 YP_002863083.1 identified by match to protein family HMM PF06130 YP_002863084.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02518 YP_002863085.1 identified by match to protein family HMM PF00936 YP_002863086.1 identified by match to protein family HMM PF05899; match to protein family HMM PF06249 YP_002863087.1 identified by match to protein family HMM PF03319 YP_002863088.1 identified by match to protein family HMM PF00936 YP_002863089.1 identified by match to protein family HMM TIGR02529 YP_002863092.1 identified by match to protein family HMM PF00936 YP_002863093.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_002863094.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901 YP_002863096.1 identified by match to protein family HMM PF00936 YP_002863098.1 identified by glimmer; putative YP_002863100.1 identified by match to protein family HMM PF00376 YP_002863101.1 identified by match to protein family HMM PF00465 YP_002863102.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943 YP_002863103.1 identified by match to protein family HMM PF07690 YP_002863104.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002863107.1 identified by match to protein family HMM PF09234 YP_002863109.1 identified by match to protein family HMM TIGR01764 YP_002863110.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002863111.1 identified by match to protein family HMM TIGR01167 YP_002863112.1 FAD/NAD(P)-binding domain YP_002863115.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002863116.1 identified by match to protein family HMM PF01261 YP_002863117.1 identified by match to protein family HMM PF01761 YP_002863118.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002863119.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002863122.1 identified by match to protein family HMM PF00005 YP_002863123.1 identified by match to protein family HMM PF02687 YP_002863124.1 identified by match to protein family HMM PF02687 YP_002863125.1 identified by match to protein family HMM PF00005 YP_002863127.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279 YP_002863128.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_002863129.1 identified by match to protein family HMM PF02302 YP_002863130.1 identified by match to protein family HMM PF00359 YP_002863131.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_002863132.1 identified by glimmer; putative YP_002863133.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023 YP_002863135.1 identified by match to protein family HMM PF00132 YP_002863136.1 identified by glimmer; putative YP_002863137.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002863138.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002863139.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002863142.1 identified by similarity to GB:CAA71086.1; match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_002863143.1 identified by match to protein family HMM PF00376 YP_002863144.1 identified by glimmer; putative YP_002863145.1 identified by glimmer; putative YP_002863146.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR01898 YP_002863147.1 identified by match to protein family HMM PF09701; match to protein family HMM TIGR01881 YP_002863148.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR02580 YP_002863149.1 identified by glimmer; putative YP_002863150.1 identified by match to protein family HMM PF09700 YP_002863152.1 identified by match to protein family HMM TIGR01894 YP_002863153.1 identified by match to protein family HMM PF01881; match to protein family HMM TIGR01877 YP_002863154.1 identified by match to protein family HMM PF01037 YP_002863156.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_002863157.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002863158.1 identified by match to protein family HMM PF03403 YP_002863159.1 identified by glimmer; putative YP_002863161.1 identified by match to protein family HMM PF01381 YP_002863162.1 identified by similarity to GB:BAC06606.1; match to protein family HMM PF07859 YP_002863164.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR03173 YP_002863165.1 identified by glimmer; putative YP_002863166.1 identified by match to protein family HMM PF00324 YP_002863167.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002863169.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_002863170.1 identified by match to protein family HMM PF01012 YP_002863171.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002863172.1 identified by similarity to SP:P11570; match to protein family HMM PF06050 YP_002863173.1 identified by similarity to SP:P11569; match to protein family HMM PF06050 YP_002863174.1 identified by match to protein family HMM PF02515 YP_002863175.1 identified by match to protein family HMM PF00037 YP_002863176.1 identified by match to protein family HMM PF06050 YP_002863177.1 identified by match to protein family HMM PF01869; match to protein family HMM PF06050; match to protein family HMM TIGR00241 YP_002863178.1 identified by match to protein family HMM PF00015 YP_002863180.1 identified by match to protein family HMM PF00583 YP_002863181.1 identified by similarity to SP:Q8Y6I2; match to protein family HMM PF00903 YP_002863182.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791 YP_002863183.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_002863185.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002863186.1 identified by match to protein family HMM PF00583 YP_002863187.1 identified by match to protein family HMM PF02517 YP_002863188.1 identified by match to protein family HMM PF03734 YP_002863189.1 identified by glimmer; putative YP_002863190.1 identified by match to protein family HMM PF00440 YP_002863194.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002863195.1 identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702 YP_002863198.1 identified by match to protein family HMM PF02579 YP_002863199.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01656 YP_002863200.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01656 YP_002863201.1 identified by match to protein family HMM PF02579 YP_002863202.1 identified by glimmer; putative YP_002863203.1 With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_002863204.1 identified by match to protein family HMM PF04122 YP_002863207.1 identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733 YP_002863208.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_002863209.1 identified by match to protein family HMM PF01212 YP_002863210.1 identified by glimmer; putative YP_002863211.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_002863212.1 identified by match to protein family HMM PF00106 YP_002863213.1 identified by glimmer; putative YP_002863215.1 identified by match to protein family HMM PF00005 YP_002863216.1 identified by match to protein family HMM PF00583 YP_002863217.1 identified by match to protein family HMM PF01047 YP_002863218.1 identified by glimmer; putative YP_002863220.1 identified by match to protein family HMM PF01208 YP_002863221.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_002863222.1 identified by match to protein family HMM PF00376; match to protein family HMM PF06445 YP_002863223.1 identified by match to protein family HMM PF00324 YP_002863224.1 identified by match to protein family HMM PF01661 YP_002863225.1 identified by match to protein family HMM PF06961 YP_002863226.1 identified by match to protein family HMM PF01047 YP_002863228.1 identified by similarity to SP:P39593; match to protein family HMM PF02110 YP_002863229.1 identified by match to protein family HMM TIGR02359 YP_002863230.1 identified by glimmer; putative YP_002863231.1 identified by match to protein family HMM PF00583 YP_002863232.1 identified by match to protein family HMM PF00753 YP_002863234.1 identified by glimmer; putative YP_002863235.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_002863236.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_002863237.1 identified by match to protein family HMM PF02632 YP_002863241.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002863242.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002863243.1 identified by glimmer; putative YP_002863245.1 identified by glimmer; putative YP_002863246.1 identified by match to protein family HMM PF07485 YP_002863247.1 identified by glimmer; putative YP_002863248.1 identified by glimmer; putative YP_002863249.1 identified by match to protein family HMM PF03417 YP_002863250.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002863251.1 identified by glimmer; putative YP_002863253.1 identified by glimmer; putative YP_002863254.1 identified by glimmer; putative YP_002863255.1 identified by match to protein family HMM PF04055 YP_002863256.1 identified by match to protein family HMM PF03483 YP_002863257.1 identified by match to protein family HMM PF01381 YP_002863259.1 identified by glimmer; putative YP_002863260.1 identified by glimmer; putative YP_002863261.1 identified by glimmer; putative YP_002863262.1 identified by match to protein family HMM PF01381 YP_002863264.1 identified by match to protein family HMM PF06114 YP_002863265.1 identified by match to protein family HMM PF00753; match to protein family HMM PF04122 YP_002863267.1 identified by glimmer; putative YP_002863268.1 identified by glimmer; putative YP_002863269.1 identified by glimmer; putative YP_002863270.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_002863271.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01520 YP_002863274.1 identified by glimmer; putative YP_002863275.1 identified by glimmer; putative YP_002863277.1 identified by match to protein family HMM PF00400; match to protein family HMM PF07494 YP_002863280.1 identified by match to protein family HMM TIGR01760 YP_002863281.1 identified by match to protein family HMM PF07532 YP_002863286.1 identified by glimmer; putative YP_002863287.1 identified by glimmer; putative YP_002863292.1 identified by similarity to GB:CAA61868.1; match to protein family HMM PF06810 YP_002863293.1 identified by glimmer; putative YP_002863300.1 identified by match to protein family HMM PF01844 YP_002863301.1 identified by match to protein family HMM PF03237; match to protein family HMM TIGR01445; match to protein family HMM TIGR01547 YP_002863302.1 identified by match to protein family HMM PF03592 YP_002863303.1 identified by match to protein family HMM PF00847; match to protein family HMM PF01844 YP_002863304.1 identified by match to protein family HMM PF03413 YP_002863307.1 identified by match to protein family HMM PF02368 YP_002863308.1 identified by glimmer; putative YP_002863309.1 identified by glimmer; putative YP_002863311.1 identified by glimmer; putative YP_002863312.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002863313.1 identified by glimmer; putative YP_002863314.1 identified by glimmer; putative YP_002863315.1 identified by glimmer; putative YP_002863317.1 identified by glimmer; putative YP_002863319.1 identified by match to protein family HMM PF06356 YP_002863320.1 identified by glimmer; putative YP_002863321.1 identified by match to protein family HMM PF03819 YP_002863322.1 identified by glimmer; putative YP_002863324.1 identified by glimmer; putative YP_002863325.1 identified by glimmer; putative YP_002863330.1 identified by glimmer; putative YP_002863331.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616 YP_002863332.1 identified by match to protein family HMM PF09588; match to protein family HMM TIGR03033 YP_002863333.1 identified by glimmer; putative YP_002863334.1 identified by glimmer; putative YP_002863337.1 identified by glimmer; putative YP_002863338.1 identified by glimmer; putative YP_002863339.1 identified by match to protein family HMM PF02498 YP_002863341.1 identified by match to protein family HMM PF01381 YP_002863342.1 identified by match to protein family HMM PF06114 YP_002863344.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_002863345.1 identified by similarity to SP:P25983 YP_002863348.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_002863349.1 identified by similarity to SP:P80293; match to protein family HMM PF00081; match to protein family HMM PF02777 YP_002863350.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463 YP_002863351.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002863352.1 identified by match to protein family HMM PF00165 YP_002863355.1 identified by glimmer; putative YP_002863356.1 identified by match to protein family HMM PF00005 YP_002863357.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002863358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002863359.1 identified by match to protein family HMM PF08241 YP_002863360.1 identified by match to protein family HMM PF00929 YP_002863361.1 identified by match to protein family HMM PF07876 YP_002863362.1 identified by match to protein family HMM PF00753 YP_002863363.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_002863364.1 identified by match to protein family HMM PF01381 YP_002863365.1 involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links YP_002863366.1 identified by glimmer; putative YP_002863367.1 identified by glimmer; putative YP_002863368.1 identified by match to protein family HMM PF01507 YP_002863369.1 identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_002863372.1 identified by match to protein family HMM PF02517 YP_002863373.1 identified by glimmer; putative YP_002863374.1 identified by match to protein family HMM PF03551 YP_002863376.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002863377.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002863378.1 identified by match to protein family HMM PF00627 YP_002863379.1 identified by glimmer; putative YP_002863381.1 identified by glimmer; putative YP_002863382.1 identified by match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002863383.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002863384.1 identified by match to protein family HMM PF04070 YP_002863385.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_002863386.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002863387.1 identified by match to protein family HMM PF00893 YP_002863389.1 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate YP_002863390.1 identified by similarity to SP:P45693; match to protein family HMM PF04232 YP_002863391.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_002863392.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002863393.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_002863394.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 YP_002863395.1 identified by match to protein family HMM PF01580; match to protein family HMM PF09397 YP_002863396.1 identified by match to protein family HMM PF00574 YP_002863397.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive YP_002863398.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_002863399.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002863400.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_002863401.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002863402.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_002863403.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002863404.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002863405.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002863406.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002863407.1 identified by match to protein family HMM PF01248 YP_002863408.1 identified by match to protein family HMM PF04296 YP_002863409.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002863410.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_002863411.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity YP_002863412.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002863413.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_002863414.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002863415.1 identified by match to protein family HMM PF01594 YP_002863416.1 identified by glimmer; putative YP_002863417.1 identified by match to protein family HMM PF01148 YP_002863418.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_002863419.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002863420.1 Catalyzes the phosphorylation of UMP to UDP YP_002863422.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002863423.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002863424.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_002863425.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_002863426.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_002863427.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368 YP_002863428.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_002863429.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002863430.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_002863431.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002863432.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002863433.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002863434.1 Essential for efficient processing of 16S rRNA YP_002863436.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_002863437.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_002863438.1 identified by match to protein family HMM PF04297 YP_002863439.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_002863440.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168 YP_002863441.1 identified by match to protein family HMM PF04055 YP_002863442.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002863443.1 carries the fatty acid chain in fatty acid biosynthesis YP_002863444.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002863445.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002863446.1 identified by match to protein family HMM PF02620 YP_002863447.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_002863448.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_002863450.1 identified by glimmer; putative YP_002863451.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002863452.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002863453.1 identified by glimmer; putative YP_002863454.1 identified by similarity to GB:CAB38126.1; match to protein family HMM PF09338 YP_002863458.1 identified by glimmer; putative YP_002863462.1 identified by match to protein family HMM PF00324 YP_002863464.1 identified by match to protein family HMM PF05544 YP_002863465.1 identified by glimmer; putative YP_002863466.1 Selenoprotein. identified by similarity to GB:CAB38127.2 YP_002863467.1 identified by glimmer; putative YP_002863468.1 identified by similarity to GB:CAB38126.1; match to protein family HMM PF09338 YP_002863471.1 identified by glimmer; putative YP_002863472.1 identified by match to protein family HMM PF01512 YP_002863473.1 identified by glimmer; putative YP_002863477.1 identified by glimmer; putative YP_002863479.1 identified by match to protein family HMM PF01512 YP_002863480.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00571; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002863481.1 identified by match to protein family HMM PF05636 YP_002863482.1 identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871 YP_002863484.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002863485.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_002863486.1 catalyzes branch migration in Holliday junction intermediates YP_002863487.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599 YP_002863488.1 identified by match to protein family HMM PF03780 YP_002863489.1 required for 70S ribosome assembly YP_002863490.1 identified by glimmer; putative YP_002863492.1 identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378 YP_002863493.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_002863494.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_002863495.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714 YP_002863496.1 identified by match to protein family HMM PF00481 YP_002863497.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_002863498.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_002863499.1 identified by match to protein family HMM PF04298 YP_002863500.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_002863501.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002863502.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002863503.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_002863504.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_002863505.1 Essential for recycling GMP and indirectly, cGMP YP_002863506.1 identified by match to protein family HMM PF04025 YP_002863507.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255 YP_002863508.1 identified by match to protein family HMM PF00710 YP_002863509.1 identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836 YP_002863510.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002863511.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002863512.1 identified by match to protein family HMM PF04459 YP_002863513.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_002863514.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002863515.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002863516.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002863517.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136 YP_002863518.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_002863519.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002863520.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_002863521.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_002863522.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_002863523.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin YP_002863524.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation YP_002863525.1 identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854 YP_002863526.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002863527.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_002863528.1 identified by match to protein family HMM PF00535 YP_002863529.1 identified by glimmer; putative YP_002863530.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_002863531.1 identified by match to protein family HMM PF01488; match to protein family HMM PF08501 YP_002863532.1 sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment YP_002863535.1 identified by match to protein family HMM PF09557; match to protein family HMM TIGR02271 YP_002863536.1 identified by match to protein family HMM PF09557; match to protein family HMM TIGR02271 YP_002863537.1 identified by match to protein family HMM PF00583 YP_002863538.1 identified by glimmer; putative YP_002863540.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616 YP_002863542.1 identified by glimmer; putative YP_002863543.1 identified by match to protein family HMM PF00905 YP_002863544.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_002863545.1 identified by match to protein family HMM PF01136 YP_002863546.1 identified by match to protein family HMM PF01596 YP_002863547.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_002863548.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_002863549.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002863550.1 identified by match to protein family HMM PF01475 YP_002863551.1 identified by match to protein family HMM PF06949 YP_002863552.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_002863553.1 identified by match to protein family HMM PF06135 YP_002863554.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002863555.1 identified by match to protein family HMM PF01594 YP_002863557.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR03419 YP_002863558.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR03402 YP_002863559.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002863560.1 identified by match to protein family HMM PF00004 YP_002863561.1 identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856 YP_002863562.1 identified by match to protein family HMM PF03547 YP_002863563.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002863564.1 identified by match to protein family HMM PF01206; match to protein family HMM TIGR03527 YP_002863565.1 catalyzes the formation of L-proline from L-ornithine YP_002863566.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002863567.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002863569.1 identified by match to protein family HMM PF07833 YP_002863570.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857 YP_002863571.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002863572.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01326 YP_002863574.1 identified by match to protein family HMM PF00501 YP_002863575.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545 YP_002863577.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550 YP_002863578.1 identified by match to protein family HMM PF00583 YP_002863582.1 identified by glimmer; putative YP_002863583.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_002863584.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_002863585.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002863586.1 identified by match to protein family HMM PF06738 YP_002863588.1 identified by match to protein family HMM PF02583 YP_002863589.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002863591.1 identified by glimmer; putative YP_002863592.1 identified by glimmer; putative YP_002863593.1 identified by glimmer; putative YP_002863595.1 catalyzes the removal of amino acids from the N termini of peptides YP_002863596.1 identified by match to protein family HMM PF01544 YP_002863597.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_002863598.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_002863599.1 identified by match to protein family HMM PF05979 YP_002863600.1 identified by match to protein family HMM PF09335 YP_002863601.1 identified by match to protein family HMM PF09335 YP_002863602.1 identified by match to protein family HMM PF02754 YP_002863605.1 identified by match to protein family HMM PF00535 YP_002863606.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_002863607.1 identified by glimmer; putative YP_002863609.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_002863611.1 identified by match to protein family HMM PF01156 YP_002863612.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_002863613.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex YP_002863614.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_002863615.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex YP_002863616.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex YP_002863617.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex YP_002863618.1 identified by match to protein family HMM PF01991 YP_002863619.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits YP_002863620.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel. YP_002863622.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055 YP_002863624.1 identified by match to protein family HMM PF00882 YP_002863626.1 identified by similarity to SP:P04191; match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002863627.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_002863628.1 identified by glimmer; putative YP_002863629.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene YP_002863630.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene YP_002863633.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937 YP_002863634.1 identified by match to protein family HMM PF07238 YP_002863635.1 identified by match to protein family HMM PF01656 YP_002863636.1 positive regulator of class III flagellar genes YP_002863637.1 membrane protein involved in the flagellar export apparatus YP_002863638.1 FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined YP_002863639.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402 YP_002863640.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_002863641.1 identified by match to protein family HMM TIGR03500 YP_002863642.1 identified by match to protein family HMM PF03748 YP_002863643.1 identified by match to protein family HMM PF00691 YP_002863644.1 identified by match to protein family HMM PF01618 YP_002863645.1 identified by match to protein family HMM PF06289 YP_002863646.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR03506 YP_002863647.1 identified by match to protein family HMM TIGR02530 YP_002863648.1 identified by match to protein family HMM PF03963 YP_002863649.1 identified by match to protein family HMM PF02120 YP_002863650.1 identified by match to protein family HMM TIGR02473 YP_002863651.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR03496; match to protein family HMM TIGR03497 YP_002863653.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002863654.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_002863655.1 forms a junction between the M-ring and FlgB during flagella biosynthesis YP_002863656.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_002863657.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_002863658.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_002863660.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_002863661.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_002863664.1 identified by match to protein family HMM PF00614 YP_002863667.1 identified by match to protein family HMM PF04892 YP_002863668.1 identified by match to protein family HMM PF01943 YP_002863669.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002863670.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666 YP_002863671.1 identified by match to protein family HMM PF02348; match to protein family HMM PF04101 YP_002863673.1 identified by match to protein family HMM PF05855 YP_002863675.1 identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031 YP_002863676.1 identified by match to protein family HMM PF02397 YP_002863677.1 identified by match to protein family HMM TIGR01007 YP_002863678.1 identified by match to protein family HMM PF02811 YP_002863679.1 identified by match to protein family HMM PF02706 YP_002863680.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002863682.1 identified by glimmer; putative YP_002863684.1 identified by glimmer; putative YP_002863685.1 identified by match to protein family HMM PF00015 YP_002863686.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_002863687.1 identified by match to protein family HMM PF00534; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002863690.1 identified by match to protein family HMM PF00657 YP_002863693.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719 YP_002863694.1 identified by match to protein family HMM PF00534 YP_002863695.1 identified by match to protein family HMM PF00535 YP_002863696.1 identified by match to protein family HMM PF00535 YP_002863703.1 identified by match to protein family HMM PF05401; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002863704.1 identified by match to protein family HMM PF04055 YP_002863705.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002863707.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666 YP_002863708.1 identified by match to protein family HMM PF02348 YP_002863709.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002863710.1 undetermined role; similar to CarB protein but much smaller YP_002863711.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002863712.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993 YP_002863713.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719 YP_002863715.1 identified by match to protein family HMM PF01973 YP_002863716.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719 YP_002863717.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_002863718.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_002863720.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195 YP_002863721.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_002863723.1 identified by match to protein family HMM PF03646 YP_002863724.1 affects carbohydrate metabolism; has regulatory role in many processes YP_002863725.1 binds to flagellin and appears to stabilize flagellin during flagella assembly YP_002863726.1 identified by match to protein family HMM PF00669; match to protein family HMM TIGR02550 YP_002863727.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492 YP_002863728.1 identified by match to protein family HMM PF05130 YP_002863729.1 identified by match to protein family HMM PF04316 YP_002863730.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002863731.1 identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397 YP_002863732.1 identified by match to protein family HMM PF01584 YP_002863733.1 identified by match to protein family HMM PF00072 YP_002863734.1 identified by match to protein family HMM PF04509 YP_002863735.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194 YP_002863736.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_002863737.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01339 YP_002863738.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_002863739.1 identified by similarity to SP:P07365; match to protein family HMM PF01584 YP_002863740.1 identified by match to protein family HMM PF03961 YP_002863741.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830 YP_002863742.1 identified by similarity to SP:P15401; match to protein family HMM PF00874; match to protein family HMM PF03123 YP_002863743.1 identified by match to protein family HMM PF01063 YP_002863744.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_002863746.1 identified by glimmer; putative YP_002863747.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 YP_002863748.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002863749.1 identified by glimmer; putative YP_002863750.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002863751.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_002863752.1 identified by match to protein family HMM PF01261 YP_002863753.1 identified by match to protein family HMM PF01436 YP_002863754.1 identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629 YP_002863755.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002863757.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383 YP_002863758.1 identified by match to protein family HMM PF04309 YP_002863759.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002863760.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002863762.1 identified by match to protein family HMM PF00999 YP_002863764.1 identified by glimmer; putative YP_002863765.1 identified by match to protein family HMM PF01522 YP_002863766.1 identified by glimmer; putative YP_002863767.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002863768.1 identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753 YP_002863769.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002863770.1 identified by match to protein family HMM PF00165; match to protein family HMM PF07883 YP_002863771.1 identified by match to protein family HMM PF02016 YP_002863772.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311 YP_002863773.1 identified by similarity to SP:P18156; match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_002863774.1 identified by match to protein family HMM PF01906 YP_002863776.1 identified by match to protein family HMM PF00005 YP_002863777.1 identified by match to protein family HMM PF00392 YP_002863778.1 identified by match to protein family HMM PF04892 YP_002863779.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_002863780.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002863782.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002863783.1 identified by similarity to SP:P24828; match to protein family HMM PF02073 YP_002863784.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002863785.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002863786.1 identified by match to protein family HMM PF03323 YP_002863787.1 identified by glimmer; putative YP_002863788.1 identified by match to protein family HMM PF01522 YP_002863789.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_002863791.1 identified by glimmer; putative YP_002863792.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002863794.1 identified by match to protein family HMM PF00037 YP_002863795.1 catalyzes the formation of glutamate from glutamine YP_002863796.1 identified by match to protein family HMM PF06725 YP_002863801.1 identified by match to protein family HMM PF00268 YP_002863802.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002863805.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002863806.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines YP_002863807.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002863808.1 identified by similarity to SP:P39765; match to protein family HMM PF00156 YP_002863809.1 identified by match to protein family HMM PF02698 YP_002863811.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_002863812.1 identified by match to protein family HMM PF00005 YP_002863813.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_002863814.1 identified by glimmer; putative YP_002863815.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002863816.1 identified by match to protein family HMM PF00293 YP_002863817.1 identified by match to protein family HMM PF01475 YP_002863818.1 identified by glimmer; putative YP_002863819.1 identified by match to protein family HMM PF00704 YP_002863820.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_002863821.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00221 YP_002863822.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002863823.1 identified by similarity to SP:P26212; match to protein family HMM PF00874; match to protein family HMM PF03123 YP_002863824.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_002863825.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998 YP_002863826.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002863827.1 identified by match to protein family HMM PF01458 YP_002863828.1 identified by match to protein family HMM PF00005 YP_002863830.1 identified by match to protein family HMM PF01475 YP_002863831.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797 YP_002863832.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_002863833.1 identified by match to protein family HMM PF00301; match to protein family HMM PF00441; match to protein family HMM PF00766; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002863835.1 identified by match to protein family HMM PF01527 YP_002863837.1 identified by match to protein family HMM PF03609 YP_002863838.1 identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828 YP_002863839.1 identified by match to protein family HMM PF06115 YP_002863840.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_002863843.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_002863844.1 identified by match to protein family HMM PF00941 YP_002863845.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_002863846.1 identified by match to protein family HMM PF00999 YP_002863847.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002863848.1 identified by match to protein family HMM PF04994 YP_002863850.1 identified by glimmer; putative YP_002863851.1 identified by match to protein family HMM PF01510 YP_002863854.1 identified by similarity to GB:CAE18142.1; match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_002863855.1 identified by match to protein family HMM PF00005 YP_002863856.1 identified by glimmer; putative YP_002863861.1 identified by match to protein family HMM PF00078 YP_002863864.1 identified by match to protein family HMM PF00144 YP_002863865.1 identified by match to protein family HMM PF00440 YP_002863867.1 identified by match to protein family HMM PF00302 YP_002863869.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002863870.1 identified by glimmer; putative YP_002863871.1 identified by match to protein family HMM PF00884 YP_002863872.1 identified by match to protein family HMM PF01925 YP_002863873.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002863874.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506 YP_002863875.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002863876.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_002863877.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_002863878.1 identified by match to protein family HMM PF00753 YP_002863879.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524 YP_002863881.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002863882.1 involved in de novo purine biosynthesis YP_002863883.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_002863884.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002863885.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_002863886.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002863887.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_002863888.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; match to protein family HMM TIGR03311 YP_002863889.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases YP_002863890.1 in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS YP_002863891.1 with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase YP_002863892.1 identified by similarity to SP:Q46803; match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR03316 YP_002863893.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_002863894.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_002863895.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate YP_002863896.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_002863897.1 identified by match to protein family HMM TIGR03172 YP_002863898.1 identified by match to protein family HMM TIGR03310 YP_002863899.1 identified by match to protein family HMM TIGR03309 YP_002863900.1 identified by match to protein family HMM PF02625 YP_002863902.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032 YP_002863903.1 identified by match to protein family HMM PF00005 YP_002863904.1 identified by match to protein family HMM PF01497 YP_002863905.1 identified by glimmer; putative YP_002863906.1 identified by match to protein family HMM PF00657 YP_002863907.1 identified by match to protein family HMM PF02698 YP_002863908.1 identified by match to protein family HMM PF00860 YP_002863909.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002863910.1 identified by similarity to PIR:G97026 YP_002863911.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002863912.1 identified by match to protein family HMM PF05257 YP_002863913.1 identified by match to protein family HMM PF01546 YP_002863915.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002863916.1 identified by match to protein family HMM PF01910 YP_002863917.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_002863918.1 identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134 YP_002863919.1 identified by match to protein family HMM PF04456 YP_002863922.1 identified by match to protein family HMM PF00005 YP_002863923.1 identified by match to protein family HMM PF00392 YP_002863925.1 identified by match to protein family HMM PF00037 YP_002863926.1 identified by match to protein family HMM PF00027 YP_002863927.1 identified by similarity to SP:P42249 YP_002863928.1 identified by glimmer; putative YP_002863929.1 identified by match to protein family HMM PF07883 YP_002863930.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_002863931.1 identified by match to protein family HMM PF03009 YP_002863933.1 identified by match to protein family HMM PF00665 YP_002863935.1 identified by match to protein family HMM PF00282 YP_002863936.1 identified by similarity to GB:AAO37401.1 YP_002863938.1 identified by glimmer; putative YP_002863939.1 identified by match to protein family HMM PF02591 YP_002863940.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_002863941.1 identified by match to protein family HMM PF04816 YP_002863943.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_002863944.1 synthesizes RNA primers at the replication forks YP_002863945.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_002863946.1 identified by match to protein family HMM TIGR02906 YP_002863947.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002863948.1 identified by match to protein family HMM PF00571; match to protein family HMM PF08279 YP_002863949.1 identified by match to protein family HMM PF00627 YP_002863950.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002863951.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_002863952.1 identified by match to protein family HMM PF01219; match to protein family HMM PF01569 YP_002863953.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_002863954.1 identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277 YP_002863955.1 identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876 YP_002863956.1 identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856 YP_002863957.1 identified by match to protein family HMM PF09424 YP_002863958.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002863959.1 identified by match to protein family HMM PF01230 YP_002863960.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_002863961.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002863962.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_002863963.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002863964.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002863965.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_002863966.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_002863967.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002863968.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002863970.1 identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867 YP_002863971.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination YP_002863972.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002863973.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_002863974.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360 YP_002863976.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690 YP_002863977.1 identified by match to protein family HMM PF07556 YP_002863978.1 identified by glimmer; putative YP_002863979.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475 YP_002863980.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_002863982.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426 YP_002863984.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_002863985.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_002863986.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002863987.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488 YP_002863988.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_002863989.1 identified by similarity to PDB:1RQ8_A; match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_002863990.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002863991.1 involved in the peptidyltransferase reaction during translation YP_002863992.1 identified by match to protein family HMM PF04327 YP_002863993.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_002863994.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_002863996.1 identified by match to protein family HMM PF04055 YP_002863997.1 identified by match to protein family HMM PF02163 YP_002863998.1 identified by match to protein family HMM PF01551 YP_002863999.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_002864000.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_002864001.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_002864002.1 blocks the formation of polar Z-ring septums YP_002864003.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002864004.1 identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426 YP_002864005.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_002864006.1 functions in MreBCD complex in some organisms YP_002864007.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_002864008.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_002864012.1 identified by match to protein family HMM PF02567 YP_002864014.1 identified by glimmer; putative YP_002864015.1 identified by match to protein family HMM PF01464 YP_002864016.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_002864017.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_002864018.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002864024.1 identified by match to protein family HMM PF00754 YP_002864030.1 identified by glimmer; putative YP_002864034.1 identified by match to protein family HMM PF00656 YP_002864037.1 identified by glimmer; putative YP_002864038.1 identified by glimmer; putative YP_002864045.1 identified by glimmer; putative YP_002864049.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714 YP_002864050.1 identified by match to protein family HMM PF01381 YP_002864051.1 identified by match to protein family HMM PF01381 YP_002864052.1 identified by match to protein family HMM PF01381 YP_002864053.1 identified by glimmer; putative YP_002864054.1 identified by similarity to SP:Q51392; match to protein family HMM PF03062 YP_002864055.1 identified by glimmer; putative YP_002864056.1 identified by match to protein family HMM PF00269 YP_002864057.1 identified by glimmer; putative YP_002864058.1 identified by glimmer; putative YP_002864059.1 identified by glimmer; putative YP_002864060.1 identified by glimmer; putative YP_002864061.1 identified by match to protein family HMM PF04246 YP_002864062.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002864063.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002864064.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002864065.1 identified by match to protein family HMM PF00753 YP_002864066.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_002864067.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_002864068.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002864069.1 identified by match to protein family HMM PF01368 YP_002864070.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_002864071.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_002864072.1 identified by match to protein family HMM PF04055 YP_002864073.1 identified by glimmer; putative YP_002864075.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_002864076.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_002864077.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_002864078.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002864079.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002864081.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_002864082.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257 YP_002864083.1 identified by match to protein family HMM PF03130 YP_002864084.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002864085.1 identified by match to protein family HMM PF01909 YP_002864087.1 identified by match to protein family HMM PF00301 YP_002864088.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156 YP_002864089.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_002864090.1 identified by match to protein family HMM PF09560; match to protein family HMM TIGR02832 YP_002864091.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002864092.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839 YP_002864093.1 identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845 YP_002864094.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838 YP_002864095.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore. YP_002864096.1 binds to sigma F preventing its association with RNA polymerase during sporulation YP_002864097.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886 YP_002864099.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884 YP_002864100.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_002864101.1 identified by match to protein family HMM PF02397 YP_002864103.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_002864104.1 identified by match to protein family HMM PF00534 YP_002864105.1 identified by match to protein family HMM PF00534 YP_002864106.1 identified by match to protein family HMM PF04932 YP_002864107.1 identified by match to protein family HMM PF00534 YP_002864108.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_002864109.1 identified by match to protein family HMM PF00534 YP_002864110.1 identified by glimmer; putative YP_002864112.1 identified by match to protein family HMM PF00560 YP_002864113.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943 YP_002864114.1 identified by match to protein family HMM PF00132 YP_002864115.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_002864116.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03446; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002864117.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321 YP_002864118.1 identified by match to protein family HMM PF01520; match to protein family HMM PF07495 YP_002864119.1 identified by match to protein family HMM PF01520; match to protein family HMM PF07495 YP_002864120.1 identified by match to protein family HMM PF01832; match to protein family HMM PF07495 YP_002864121.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_002864122.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002864123.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002864124.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_002864125.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711; match to protein family HMM PF05889 YP_002864126.1 identified by glimmer; putative YP_002864127.1 identified by match to protein family HMM PF01515 YP_002864128.1 identified by match to protein family HMM PF01070; match to protein family HMM PF01180 YP_002864129.1 identified by match to protein family HMM PF04463 YP_002864130.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange YP_002864131.1 identified by match to protein family HMM PF01136 YP_002864133.1 identified by glimmer; putative YP_002864134.1 identified by glimmer; putative YP_002864135.1 identified by match to protein family HMM PF00535 YP_002864137.1 identified by match to protein family HMM PF05164 YP_002864138.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002864139.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002864140.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_002864141.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254 YP_002864142.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_002864143.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002864144.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_002864145.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_002864146.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002864147.1 identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834 YP_002864150.1 identified by match to protein family HMM PF00005 YP_002864151.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_002864152.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002864154.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002864155.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002864156.1 identified by match to protein family HMM PF00528 YP_002864157.1 identified by match to protein family HMM PF00528 YP_002864158.1 identified by match to protein family HMM PF00496 YP_002864159.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_002864160.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002864161.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002864162.1 identified by match to protein family HMM PF00155 YP_002864163.1 identified by match to protein family HMM PF00132; match to protein family HMM PF08503; match to protein family HMM TIGR03532 YP_002864164.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002864166.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764 YP_002864170.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_002864171.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002864172.1 identified by match to protein family HMM PF00583 YP_002864173.1 identified by match to protein family HMM PF00005 YP_002864174.1 identified by match to protein family HMM PF09084 YP_002864176.1 identified by match to protein family HMM PF00665 YP_002864177.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002864178.1 identified by match to protein family HMM PF00005 YP_002864179.1 identified by match to protein family HMM PF00528 YP_002864180.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720 YP_002864181.1 identified by match to protein family HMM PF01841 YP_002864182.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_002864183.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002864184.1 identified by match to protein family HMM PF06177 YP_002864185.1 identified by match to protein family HMM PF01613 YP_002864186.1 identified by match to protein family HMM PF01471; match to protein family HMM PF03734 YP_002864188.1 identified by match to protein family HMM PF06865 YP_002864189.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_002864190.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901 YP_002864191.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_002864192.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002864193.1 identified by match to protein family HMM PF00533 YP_002864194.1 identified by glimmer; putative YP_002864195.1 identified by match to protein family HMM PF00092 YP_002864196.1 identified by match to protein family HMM PF07728 YP_002864201.1 identified by similarity to GB:EDK33626.1 YP_002864202.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002864203.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_002864204.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_002864205.1 identified by match to protein family HMM PF01012 YP_002864206.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002864207.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_002864208.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_002864209.1 identified by match to protein family HMM PF00378 YP_002864210.1 identified by glimmer; putative YP_002864211.1 identified by match to protein family HMM PF01541 YP_002864212.1 identified by match to protein family HMM PF00860 YP_002864213.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_002864214.1 identified by glimmer; putative YP_002864216.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002864217.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002864219.1 identified by match to protein family HMM PF03009 YP_002864220.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002864221.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_002864222.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493 YP_002864223.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_002864225.1 identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731 YP_002864227.1 identified by match to protein family HMM PF01475 YP_002864228.1 identified by match to protein family HMM PF01547 YP_002864230.1 identified by match to protein family HMM PF08279 YP_002864232.1 identified by glimmer; putative YP_002864233.1 identified by glimmer; putative YP_002864234.1 identified by match to protein family HMM PF02517 YP_002864235.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002864236.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_002864237.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR02902 YP_002864238.1 binds and unfolds substrates as part of the ClpXP protease YP_002864239.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002864240.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002864241.1 identified by match to protein family HMM PF01261 YP_002864243.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002864244.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_002864245.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+) YP_002864246.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_002864247.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857 YP_002864248.1 involved in the allosteric regulation of aspartate carbamoyltransferase YP_002864249.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002864250.1 identified by similarity to SP:P11568; match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002864252.1 identified by match to protein family HMM PF06050 YP_002864253.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002864254.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_002864257.1 identified by match to protein family HMM PF00496 YP_002864258.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002864259.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002864260.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_002864261.1 identified by match to protein family HMM PF00375 YP_002864263.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_002864264.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 YP_002864265.1 identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531 YP_002864266.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002864267.1 identified by match to protein family HMM PF01464 YP_002864268.1 identified by match to protein family HMM PF07495 YP_002864269.1 identified by glimmer; putative YP_002864270.1 identified by match to protein family HMM PF02639 YP_002864271.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_002864273.1 identified by match to protein family HMM PF00440 YP_002864274.1 identified by match to protein family HMM PF00583 YP_002864275.1 identified by match to protein family HMM PF00389; match to protein family HMM PF01262; match to protein family HMM PF02826 YP_002864276.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002864278.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00766; match to protein family HMM PF01012 YP_002864279.1 identified by match to protein family HMM PF01012 YP_002864280.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002864281.1 identified by match to protein family HMM PF06050 YP_002864282.1 identified by match to protein family HMM PF06050 YP_002864283.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002864284.1 identified by match to protein family HMM PF02515 YP_002864285.1 identified by match to protein family HMM PF00501 YP_002864286.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002864287.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002864288.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_002864289.1 identified by match to protein family HMM PF01171 YP_002864290.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002864291.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002864292.1 identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906 YP_002864293.1 identified by match to protein family HMM PF09335 YP_002864294.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906 YP_002864295.1 identified by match to protein family HMM PF00730; match to protein family HMM PF07934 YP_002864296.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_002864297.1 identified by match to protein family HMM PF00175 YP_002864298.1 modulates transcription in response to the NADH/NAD(+) redox state YP_002864299.1 identified by match to protein family HMM PF00005 YP_002864300.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002864301.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694 YP_002864302.1 identified by match to protein family HMM PF02554 YP_002864303.1 identified by match to protein family HMM PF05193; match to protein family HMM PF08367 YP_002864304.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_002864305.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002864306.1 identified by match to protein family HMM PF05866 YP_002864307.1 identified by match to protein family HMM PF07992 YP_002864310.1 identified by match to protein family HMM PF01297 YP_002864311.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_002864312.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_002864313.1 identified by match to protein family HMM PF00814 YP_002864314.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_002864315.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002864317.1 identified by match to protein family HMM PF04326 YP_002864319.1 identified by glimmer; putative YP_002864320.1 identified by match to protein family HMM PF01569 YP_002864321.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503 YP_002864322.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002864323.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002864324.1 identified by glimmer; putative YP_002864325.1 identified by match to protein family HMM PF01880; match to protein family HMM PF06397; match to protein family HMM TIGR00319; match to protein family HMM TIGR00320; match to protein family HMM TIGR00332 YP_002864327.1 identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205 YP_002864328.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_002864329.1 identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657 YP_002864330.1 catalyzes the removal of amino acids from the N termini of peptides YP_002864331.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002864333.1 identified by similarity to GB:ABK61386.1 YP_002864334.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_002864335.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases YP_002864336.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002864337.1 identified by match to protein family HMM PF01541 YP_002864339.1 identified by match to protein family HMM PF00005 YP_002864341.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002864342.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740 YP_002864343.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002864344.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002864346.1 identified by match to protein family HMM PF00005 YP_002864349.1 identified by match to protein family HMM PF05913 YP_002864350.1 identified by match to protein family HMM PF01869 YP_002864351.1 identified by match to protein family HMM PF02255 YP_002864352.1 identified by match to protein family HMM PF02302 YP_002864353.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610; match to protein family HMM PF07728 YP_002864354.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002864355.1 identified by match to protein family HMM PF02056 YP_002864357.1 identified by match to protein family HMM PF02675; match to protein family HMM TIGR03330 YP_002864358.1 identified by match to protein family HMM PF01861 YP_002864360.1 identified by match to protein family HMM PF05368 YP_002864363.1 identified by glimmer; putative YP_002864364.1 identified by glimmer; putative YP_002864365.1 identified by match to protein family HMM PF02826 YP_002864368.1 identified by match to protein family HMM PF00383 YP_002864369.1 identified by match to protein family HMM PF01370 YP_002864370.1 identified by match to protein family HMM PF01872 YP_002864371.1 identified by glimmer; putative YP_002864372.1 identified by match to protein family HMM PF04657 YP_002864373.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002864375.1 identified by match to protein family HMM PF02687 YP_002864376.1 identified by match to protein family HMM PF00005 YP_002864377.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002864378.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002864380.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002864382.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248 YP_002864383.1 identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_002864384.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_002864385.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_002864386.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_002864387.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_002864388.1 identified by match to protein family HMM PF03668 YP_002864389.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002864390.1 identified by match to protein family HMM PF02811 YP_002864391.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002864392.1 identified by match to protein family HMM PF04307 YP_002864393.1 identified by match to protein family HMM PF01336; match to protein family HMM PF01966 YP_002864394.1 identified by match to protein family HMM PF00905 YP_002864395.1 identified by match to protein family HMM PF01098 YP_002864396.1 identified by match to protein family HMM PF00498 YP_002864397.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002864398.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002864400.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_002864401.1 identified by match to protein family HMM PF02687 YP_002864402.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673 YP_002864403.1 identified by match to protein family HMM PF02588 YP_002864404.1 identified by glimmer; putative YP_002864405.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002864406.1 identified by match to protein family HMM PF00456 YP_002864407.1 identified by match to protein family HMM PF02452 YP_002864409.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_002864411.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_002864412.1 identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 YP_002864414.1 identified by match to protein family HMM PF03553; match to protein family HMM PF06808 YP_002864415.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_002864417.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002864418.1 identified by match to protein family HMM PF00375 YP_002864420.1 identified by match to protein family HMM PF00376; match to protein family HMM PF06445 YP_002864421.1 identified by match to protein family HMM PF02633 YP_002864422.1 identified by match to protein family HMM PF00080 YP_002864423.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_002864424.1 identified by match to protein family HMM PF00923 YP_002864425.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002864426.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate YP_002864427.1 identified by match to protein family HMM PF03829 YP_002864428.1 identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825 YP_002864429.1 identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821 YP_002864430.1 identified by match to protein family HMM PF06923 YP_002864431.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002864432.1 identified by match to protein family HMM PF04198 YP_002864433.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002864435.1 identified by match to protein family HMM PF02775 YP_002864436.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA YP_002864437.1 identified by match to protein family HMM PF00037 YP_002864439.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_002864440.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate YP_002864441.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_002864443.1 identified by match to protein family HMM PF07949 YP_002864444.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_002864445.1 identified by match to protein family HMM PF07486 YP_002864446.1 identified by match to protein family HMM PF01134; match to protein family HMM PF07992 YP_002864447.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_002864448.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR01975 YP_002864449.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002864451.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_002864452.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00381; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229 YP_002864453.1 identified by match to protein family HMM PF00515 YP_002864454.1 identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723 YP_002864455.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid YP_002864456.1 identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM TIGR02883 YP_002864457.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_002864458.1 forms a direct contact with the tRNA during translation YP_002864459.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002864460.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002864461.1 identified by match to protein family HMM PF02361 YP_002864462.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene YP_002864463.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene YP_002864464.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002864465.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002864466.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002864467.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002864468.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002864469.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_002864470.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002864472.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_002864473.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002864474.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002864475.1 late assembly protein YP_002864476.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002864477.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002864478.1 binds 5S rRNA along with protein L5 and L25 YP_002864479.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002864480.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002864481.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_002864482.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002864483.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002864484.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002864485.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002864486.1 one of the stabilizing components for the large ribosomal subunit YP_002864487.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002864488.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002864489.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002864490.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002864491.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002864492.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002864493.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002864494.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002864495.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002864496.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002864497.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002864498.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002864499.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002864500.1 identified by match to protein family HMM PF01248 YP_002864501.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002864502.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002864503.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002864504.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002864505.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002864506.1 binds directly to 23S ribosomal RNA YP_002864507.1 Modulates Rho-dependent transcription termination YP_002864508.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002864509.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_002864510.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002864511.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002864512.1 identified by match to protein family HMM PF05991 YP_002864513.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_002864514.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_002864515.1 identified by match to protein family HMM PF00636 YP_002864516.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002864517.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01127 YP_002864518.1 identified by match to protein family HMM PF03129; match to protein family HMM PF04073 YP_002864519.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_002864520.1 identified by match to protein family HMM PF01850; match to protein family HMM PF01938 YP_002864522.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_002864523.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002864524.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002864525.1 identified by match to protein family HMM PF00217 YP_002864526.1 identified by match to protein family HMM PF02151 YP_002864527.1 identified by match to protein family HMM PF05848 YP_002864529.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002864530.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_002864531.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002864532.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002864533.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002864535.1 identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_002864536.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_002864537.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_002864538.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_002864539.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_002864540.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_002864541.1 identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865 YP_002864542.1 identified by match to protein family HMM PF00575 YP_002864543.1 identified by match to protein family HMM PF04977 YP_002864544.1 identified by match to protein family HMM PF09578; match to protein family HMM TIGR02893 YP_002864545.1 identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892 YP_002864546.1 identified by match to protein family HMM PF01479 YP_002864547.1 identified by match to protein family HMM PF00216 YP_002864548.1 identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444 YP_002864549.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002864550.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851 YP_002864551.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_002864552.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_002864553.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002864554.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_002864555.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002864556.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002864557.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002864558.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_002864559.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus YP_002864560.1 identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743 YP_002864561.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002864563.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906 YP_002864564.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002864566.1 catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate YP_002864567.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_002864570.1 identified by match to protein family HMM PF04055 YP_002864571.1 identified by match to protein family HMM PF00015; match to protein family HMM PF07700 YP_002864572.1 identified by match to protein family HMM PF01381 YP_002864574.1 identified by match to protein family HMM PF00160 YP_002864575.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002864576.1 identified by match to protein family HMM PF00120 YP_002864578.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002864579.1 identified by match to protein family HMM PF00753 YP_002864581.1 identified by match to protein family HMM PF02810 YP_002864582.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_002864583.1 identified by match to protein family HMM PF07690 YP_002864584.1 identified by match to protein family HMM PF03358 YP_002864585.1 identified by match to protein family HMM PF00440; match to protein family HMM PF02796 YP_002864586.1 identified by match to protein family HMM PF00165 YP_002864587.1 identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500 YP_002864588.1 identified by match to protein family HMM PF00881 YP_002864590.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055 YP_002864592.1 catalyzes the formation of biotin from dethiobiotin and sulfur YP_002864593.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_002864594.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231 YP_002864595.1 identified by match to protein family HMM PF00474 YP_002864596.1 identified by match to protein family HMM PF00534 YP_002864597.1 identified by match to protein family HMM PF02811 YP_002864598.1 identified by match to protein family HMM PF08761 YP_002864599.1 identified by match to protein family HMM PF04657 YP_002864600.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002864601.1 identified by match to protein family HMM PF00082 YP_002864602.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002864603.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002864604.1 identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513 YP_002864605.1 identified by match to protein family HMM TIGR00515 YP_002864606.1 identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514 YP_002864607.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_002864608.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_002864609.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002864610.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002864611.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_002864612.1 identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151 YP_002864613.1 identified by match to protein family HMM PF00550 YP_002864614.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747 YP_002864615.1 identified by match to protein family HMM PF01047 YP_002864616.1 identified by match to protein family HMM PF03060 YP_002864617.1 identified by match to protein family HMM PF01551 YP_002864618.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002864619.1 acts to load the DnaB helicase onto the initiation site during DNA replication YP_002864620.1 identified by match to protein family HMM PF03618 YP_002864622.1 identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275 YP_002864623.1 identified by match to protein family HMM PF01643 YP_002864625.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002864627.1 identified by glimmer; putative YP_002864628.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002864629.1 unwinds double stranded DNA YP_002864630.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR02903 YP_002864631.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002864632.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002864635.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002864636.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_002864637.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002864638.1 identified by match to protein family HMM PF06050 YP_002864639.1 identified by match to protein family HMM PF06107 YP_002864640.1 identified by match to protein family HMM PF00924 YP_002864642.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977 YP_002864643.1 identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872 YP_002864644.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_002864645.1 identified by glimmer; putative YP_002864647.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_002864648.1 identified by match to protein family HMM PF01656 YP_002864649.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_002864650.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002864651.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002864652.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002864653.1 identified by match to protein family HMM PF01424 YP_002864654.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_002864655.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_002864656.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_002864657.1 in Escherichia coli transcription of this gene is enhanced by polyamines