-- dump date 20140619_043505 -- class Genbank::CDS -- table cds_note -- id note YP_001919466.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001919467.1 binds the polymerase to DNA and acts as a sliding clamp YP_001919468.1 identified by match to protein family HMM PF01479; match to protein family HMM TIGR02988 YP_001919469.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_001919471.1 negatively supercoils closed circular double-stranded DNA YP_001919472.1 negatively supercoils closed circular double-stranded DNA YP_001919473.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001919474.1 identified by match to protein family HMM PF02829; match to protein family HMM PF08279 YP_001919475.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_001919476.1 identified by match to protein family HMM PF07892 YP_001919477.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001919478.1 identified by match to protein family HMM PF00583 YP_001919479.1 identified by match to protein family HMM TIGR02773 YP_001919480.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785 YP_001919481.1 identified by match to protein family HMM PF03734 YP_001919482.1 identified by glimmer; putative YP_001919483.1 identified by match to protein family HMM PF00375 YP_001919484.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001919486.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001919487.1 identified by match to protein family HMM PF00440 YP_001919488.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512 YP_001919489.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR01484 YP_001919490.1 identified by match to protein family HMM PF00005 YP_001919491.1 identified by match to protein family HMM PF00209 YP_001919492.1 identified by glimmer; putative YP_001919493.1 identified by glimmer; putative YP_001919494.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_001919495.1 identified by match to protein family HMM PF08876 YP_001919497.1 identified by glimmer; putative YP_001919498.1 identified by match to protein family HMM PF07670 YP_001919499.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001919500.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001919501.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001919502.1 identified by match to protein family HMM PF00583 YP_001919503.1 identified by match to protein family HMM PF03703 YP_001919504.1 identified by match to protein family HMM PF03703 YP_001919505.1 identified by match to protein family HMM PF00106 YP_001919506.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001919507.1 identified by match to protein family HMM PF00015 YP_001919508.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001919509.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_001919510.1 identified by match to protein family HMM PF01966 YP_001919511.1 identified by match to protein family HMM PF00120 YP_001919512.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_001919513.1 identified by match to protein family HMM PF00160 YP_001919515.1 identified by match to protein family HMM PF01381 YP_001919516.1 identified by match to protein family HMM PF00082 YP_001919517.1 identified by match to protein family HMM PF01471 YP_001919518.1 identified by match to protein family HMM PF04055 YP_001919521.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_001919522.1 catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate YP_001919523.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02475 YP_001919524.1 identified by match to protein family HMM PF04324 YP_001919525.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001919526.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001919527.1 identified by match to protein family HMM PF09359 YP_001919529.1 identified by match to protein family HMM PF08757 YP_001919530.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_001919531.1 identified by glimmer; putative YP_001919532.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_001919533.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001919535.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001919537.1 identified by match to protein family HMM PF07670 YP_001919538.1 identified by match to protein family HMM PF07670 YP_001919540.1 identified by match to protein family HMM PF03109 YP_001919541.1 identified by match to protein family HMM PF03553 YP_001919542.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_001919544.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001919546.1 identified by match to protein family HMM PF00230 YP_001919547.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase YP_001919548.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365 YP_001919549.1 identified by match to protein family HMM PF03610; match to protein family HMM TIGR02364 YP_001919550.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001919551.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_001919552.1 identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501 YP_001919553.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334 YP_001919554.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001919557.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001919561.1 identified by match to protein family HMM PF09515; match to protein family HMM TIGR02357 YP_001919562.1 identified by glimmer; putative YP_001919563.1 identified by match to protein family HMM PF03551 YP_001919564.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001919565.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001919566.1 in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis YP_001919567.1 Catalyzes the conversion of citrate to isocitrate YP_001919568.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001919569.1 identified by match to protein family HMM TIGR02491 YP_001919570.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_001919571.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001919572.1 identified by match to protein family HMM PF00128 YP_001919573.1 identified by match to protein family HMM PF01547 YP_001919574.1 identified by match to protein family HMM PF00528 YP_001919575.1 identified by match to protein family HMM PF00528 YP_001919576.1 identified by glimmer; putative YP_001919577.1 identified by match to protein family HMM PF09587 YP_001919579.1 identified by match to protein family HMM PF05065 YP_001919580.1 identified by glimmer; putative YP_001919582.1 identified by match to protein family HMM PF01381 YP_001919584.1 identified by match to protein family HMM PF09250; match to protein family HMM TIGR01613 YP_001919585.1 identified by glimmer; putative YP_001919587.1 identified by match to protein family HMM PF00589 YP_001919588.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001919589.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_001919590.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_001919591.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001919592.1 identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743 YP_001919593.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus YP_001919594.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_001919595.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251 YP_001919596.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001919597.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001919598.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_001919599.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_001919600.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851 YP_001919601.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_001919602.1 identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444 YP_001919603.1 identified by match to protein family HMM PF00216 YP_001919604.1 identified by match to protein family HMM PF01479 YP_001919605.1 identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892 YP_001919606.1 identified by match to protein family HMM PF09578; match to protein family HMM TIGR02893 YP_001919607.1 identified by match to protein family HMM PF04977 YP_001919608.1 identified by match to protein family HMM PF00575 YP_001919609.1 identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865 YP_001919610.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_001919611.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_001919612.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_001919613.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_001919614.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_001919615.1 identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_001919617.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001919618.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_001919619.1 identified by glimmer; putative YP_001919620.1 identified by glimmer; putative YP_001919621.1 identified by glimmer; putative YP_001919622.1 identified by match to protein family HMM PF05738 YP_001919623.1 identified by glimmer; putative YP_001919624.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001919625.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_001919627.1 identified by match to protein family HMM PF01544 YP_001919630.1 identified by glimmer; putative YP_001919632.1 identified by match to protein family HMM PF02223 YP_001919633.1 identified by match to protein family HMM PF06153 YP_001919634.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_001919635.1 identified by match to protein family HMM PF04468 YP_001919636.1 identified by match to protein family HMM PF00037 YP_001919638.1 identified by match to protein family HMM PF05848 YP_001919639.1 identified by match to protein family HMM PF02151 YP_001919640.1 identified by match to protein family HMM PF00217 YP_001919641.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001919642.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001919643.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196 YP_001919644.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196 YP_001919645.1 identified by glimmer; putative YP_001919646.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001919647.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_001919649.1 identified by match to protein family HMM PF01850; match to protein family HMM PF01938 YP_001919650.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_001919651.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001919652.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001919653.1 identified by match to protein family HMM PF00636 YP_001919654.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_001919655.1 identified by match to protein family HMM PF05991 YP_001919656.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001919657.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001919658.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_001919659.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_001919660.1 Modulates Rho-dependent transcription termination YP_001919661.1 binds directly to 23S ribosomal RNA YP_001919662.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001919663.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001919664.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001919665.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001919666.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001919667.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001919668.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001919669.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001919670.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001919671.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001919672.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001919673.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001919674.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001919675.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001919676.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001919677.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001919678.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001919679.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001919680.1 one of the stabilizing components for the large ribosomal subunit YP_001919681.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001919682.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001919683.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001919684.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001919685.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_001919686.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001919687.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001919688.1 binds 5S rRNA along with protein L5 and L25 YP_001919689.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001919690.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001919691.1 late assembly protein YP_001919692.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001919693.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001919694.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_001919696.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001919697.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_001919698.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001919699.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001919700.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001919701.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001919702.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001919703.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene YP_001919704.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene YP_001919705.1 identified by match to protein family HMM PF02361 YP_001919706.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001919707.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001919708.1 forms a direct contact with the tRNA during translation YP_001919709.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_001919710.1 identified by match to protein family HMM PF01520; match to protein family HMM TIGR02883 YP_001919711.1 identified by glimmer; putative YP_001919712.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid YP_001919713.1 Catalyzes the reversible hydration of fumaric acid to yield l-malic acid YP_001919714.1 identified by glimmer; putative YP_001919715.1 identified by match to protein family HMM PF02588 YP_001919716.1 identified by match to protein family HMM PF00515 YP_001919717.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001919718.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001919719.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001919720.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_001919721.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_001919722.1 identified by match to protein family HMM PF02417 YP_001919723.1 identified by match to protein family HMM PF02417 YP_001919724.1 identified by match to protein family HMM PF00515 YP_001919725.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR01975 YP_001919726.1 identified by match to protein family HMM PF07486 YP_001919727.1 identified by glimmer; putative YP_001919728.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_001919729.1 identified by match to protein family HMM PF07949 YP_001919730.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992 YP_001919731.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate YP_001919732.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_001919733.1 identified by match to protein family HMM PF01987 YP_001919734.1 identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531 YP_001919735.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_001919737.1 identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119 YP_001919738.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_001919739.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_001919740.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001919741.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001919742.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118 YP_001919743.1 identified by match to protein family HMM PF01450; match to protein family HMM PF07991; match to protein family HMM TIGR00465 YP_001919744.1 identified by glimmer; putative YP_001919745.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001919746.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001919747.1 identified by match to protein family HMM PF01047 YP_001919748.1 identified by match to protein family HMM PF01541 YP_001919749.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001919750.1 identified by match to protein family HMM PF00128 YP_001919751.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003 YP_001919752.1 identified by match to protein family HMM PF03372 YP_001919753.1 identified by match to protein family HMM PF01047 YP_001919754.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_001919755.1 identified by match to protein family HMM PF00873 YP_001919757.1 identified by match to protein family HMM PF01473 YP_001919758.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_001919759.1 identified by match to protein family HMM PF00027 YP_001919760.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001919761.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_001919762.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_001919763.1 identified by match to protein family HMM PF01226 YP_001919765.1 identified by match to protein family HMM PF00484 YP_001919766.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_001919767.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_001919768.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001919770.1 identified by match to protein family HMM PF04309 YP_001919771.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00881 YP_001919773.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_001919774.1 identified by glimmer; putative YP_001919775.1 identified by glimmer; putative YP_001919776.1 identified by match to protein family HMM PF01522 YP_001919778.1 identified by match to protein family HMM PF02588 YP_001919779.1 catalyzes the formation of biotin from dethiobiotin and sulfur YP_001919780.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001919781.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001919783.1 identified by match to protein family HMM PF01012 YP_001919784.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001919785.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_001919787.1 identified by match to protein family HMM PF01734 YP_001919788.1 identified by match to protein family HMM PF02810 YP_001919789.1 identified by match to protein family HMM PF00483 YP_001919791.1 identified by match to protein family HMM PF01022 YP_001919792.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_001919793.1 modulates transcription in response to the NADH/NAD(+) redox state YP_001919794.1 catalyzes the formation of crotonoyl-CoA from (3R)-3-hydroxybutanoyl-CoA YP_001919795.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001919796.1 identified by match to protein family HMM PF01012 YP_001919797.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001919798.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_001919799.1 identified by match to protein family HMM PF09719; match to protein family HMM TIGR01909 YP_001919800.1 identified by match to protein family HMM PF00730; match to protein family HMM PF07934 YP_001919801.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906 YP_001919802.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001919803.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001919805.1 identified by match to protein family HMM PF01547 YP_001919806.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001919807.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001919808.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001919809.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_001919810.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001919812.1 identified by match to protein family HMM PF01522 YP_001919814.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279 YP_001919815.1 identified by match to protein family HMM PF06923 YP_001919816.1 identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821 YP_001919817.1 identified by match to protein family HMM PF03612 YP_001919818.1 identified by match to protein family HMM PF07663 YP_001919819.1 identified by match to protein family HMM PF03829 YP_001919820.1 Converts D-sorbitol-dphosphate to D-fructose-6-phosphate YP_001919821.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00875 YP_001919822.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_001919823.1 identified by match to protein family HMM PF02639 YP_001919824.1 identified by match to protein family HMM PF07495 YP_001919825.1 identified by match to protein family HMM PF01464 YP_001919826.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001919827.1 identified by match to protein family HMM PF00580 YP_001919828.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_001919829.1 identified by glimmer; putative YP_001919830.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_001919831.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001919832.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001919834.1 identified by match to protein family HMM PF00496 YP_001919836.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_001919837.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_001919838.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_001919839.1 identified by glimmer; putative YP_001919840.1 identified by glimmer; putative YP_001919841.1 identified by match to protein family HMM PF01431 YP_001919843.1 identified by match to protein family HMM PF01522 YP_001919844.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001919845.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001919847.1 identified by match to protein family HMM PF01523 YP_001919848.1 identified by match to protein family HMM PF01523 YP_001919849.1 identified by match to protein family HMM PF00884 YP_001919851.1 identified by match to protein family HMM PF01134; match to protein family HMM PF07992 YP_001919852.1 identified by match to protein family HMM PF00657 YP_001919853.1 identified by match to protein family HMM PF05866 YP_001919854.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001919856.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_001919857.1 identified by glimmer; putative YP_001919858.1 identified by match to protein family HMM PF04346 YP_001919860.1 identified by match to protein family HMM PF00534 YP_001919861.1 identified by match to protein family HMM TIGR02906 YP_001919863.1 identified by match to protein family HMM TIGR02906 YP_001919864.1 identified by match to protein family HMM PF00534 YP_001919865.1 identified by match to protein family HMM TIGR02906 YP_001919866.1 identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855 YP_001919867.1 identified by match to protein family HMM PF06257 YP_001919868.1 identified by match to protein family HMM PF01476 YP_001919869.1 identified by match to protein family HMM PF03575; match to protein family HMM TIGR02069 YP_001919870.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_001919871.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001919872.1 identified by match to protein family HMM PF09551; match to protein family HMM TIGR02837 YP_001919873.1 identified by match to protein family HMM PF02568; match to protein family HMM PF05670 YP_001919874.1 identified by match to protein family HMM PF09148 YP_001919876.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001919877.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001919878.1 identified by match to protein family HMM PF04101; match to protein family HMM PF06925 YP_001919879.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_001919880.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_001919881.1 identified by match to protein family HMM PF07136 YP_001919882.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387; match to protein family HMM TIGR03534 YP_001919883.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001919885.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_001919886.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_001919887.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_001919888.1 identified by match to protein family HMM PF00383 YP_001919889.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_001919890.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_001919892.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_001919893.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_001919894.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel YP_001919895.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001919896.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001919897.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_001919898.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001919899.1 identified by match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216 YP_001919900.1 identified by glimmer; putative YP_001919901.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001919902.1 identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870 YP_001919903.1 identified by match to protein family HMM PF01551 YP_001919904.1 identified by match to protein family HMM TIGR02844 YP_001919905.1 identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904 YP_001919906.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_001919907.1 identified by glimmer; putative YP_001919908.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001919909.1 identified by match to protein family HMM TIGR01448 YP_001919912.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_001919913.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_001919914.1 identified by glimmer; putative YP_001919915.1 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA YP_001919916.1 identified by match to protein family HMM PF04389 YP_001919918.1 identified by glimmer; putative YP_001919919.1 identified by match to protein family HMM PF00575; match to protein family HMM PF09371 YP_001919920.1 identified by match to protein family HMM PF00892 YP_001919924.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_001919925.1 identified by match to protein family HMM PF00814 YP_001919926.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_001919927.1 identified by match to protein family HMM PF01297 YP_001919928.1 identified by match to protein family HMM PF03060 YP_001919929.1 identified by match to protein family HMM PF00269 YP_001919930.1 identified by match to protein family HMM PF00149 YP_001919932.1 identified by match to protein family HMM PF01297 YP_001919933.1 identified by match to protein family HMM PF00488 YP_001919934.1 identified by match to protein family HMM PF00929 YP_001919935.1 identified by match to protein family HMM PF00571 YP_001919937.1 identified by match to protein family HMM PF04012 YP_001919938.1 identified by glimmer; putative YP_001919939.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001919940.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_001919941.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_001919942.1 identified by match to protein family HMM PF00583 YP_001919943.1 identified by match to protein family HMM PF05036 YP_001919944.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_001919945.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_001919946.1 functions in MreBCD complex in some organisms YP_001919947.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001919948.1 identified by match to protein family HMM TIGR03426 YP_001919949.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_001919950.1 blocks the formation of polar Z-ring septums YP_001919951.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_001919952.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_001919953.1 identified by match to protein family HMM PF01098 YP_001919954.1 identified by match to protein family HMM PF02142; match to protein family HMM TIGR00160 YP_001919955.1 identified by match to protein family HMM PF01551 YP_001919956.1 identified by match to protein family HMM PF02163 YP_001919957.1 identified by match to protein family HMM PF04055 YP_001919959.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_001919960.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_001919961.1 identified by match to protein family HMM PF04327 YP_001919962.1 involved in the peptidyltransferase reaction during translation YP_001919963.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001919964.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_001919965.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_001919966.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488 YP_001919967.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_001919968.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_001919969.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_001919970.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426 YP_001919972.1 identified by glimmer; putative YP_001919973.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05175; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_001919974.1 identified by match to protein family HMM PF01497 YP_001919975.1 identified by match to protein family HMM PF01032 YP_001919976.1 identified by match to protein family HMM PF00005 YP_001919977.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223 YP_001919978.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00990; match to protein family HMM PF07719; match to protein family HMM TIGR00254 YP_001919979.1 identified by glimmer; putative YP_001919980.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001919981.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases YP_001919982.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR03316 YP_001919983.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_001919984.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate YP_001919985.1 in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS YP_001919986.1 identified by glimmer; putative YP_001919987.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_001919988.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037 YP_001919989.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_001919991.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_001919992.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_001919993.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; match to protein family HMM TIGR03311 YP_001919994.1 identified by match to protein family HMM PF00383 YP_001919995.1 putative molybdenum cofactor-binding protein; participates in purine salvage YP_001919996.1 FAD-binding subunit; with XdhA and XdhC participates in purine salvage YP_001919997.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_001919998.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_001919999.1 identified by match to protein family HMM PF01497 YP_001920000.1 identified by match to protein family HMM PF01032 YP_001920001.1 identified by match to protein family HMM PF00005 YP_001920002.1 identified by match to protein family HMM TIGR03172 YP_001920003.1 identified by match to protein family HMM TIGR03309 YP_001920004.1 identified by match to protein family HMM TIGR03527 YP_001920005.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476 YP_001920006.1 identified by match to protein family HMM PF06050 YP_001920007.1 identified by similarity to SP:P11568; match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001920009.1 identified by match to protein family HMM PF02625 YP_001920010.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454 YP_001920011.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01166 YP_001920012.1 identified by match to protein family HMM PF01891; match to protein family HMM TIGR00123 YP_001920013.1 identified by match to protein family HMM PF02553 YP_001920014.1 identified by glimmer; putative YP_001920015.1 identified by glimmer; putative YP_001920016.1 identified by glimmer; putative YP_001920017.1 identified by match to protein family HMM PF00440 YP_001920020.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08030 YP_001920022.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001920023.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_001920024.1 identified by match to protein family HMM PF00175 YP_001920025.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_001920026.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001920027.1 identified by match to protein family HMM PF00160 YP_001920028.1 identified by match to protein family HMM PF06912 YP_001920029.1 identified by match to protein family HMM PF00583 YP_001920030.1 identified by match to protein family HMM PF00106 YP_001920031.1 identified by match to protein family HMM PF00561 YP_001920032.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545 YP_001920033.1 identified by match to protein family HMM PF01909 YP_001920036.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_001920037.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001920038.1 identified by glimmer; putative YP_001920041.1 identified by match to protein family HMM PF00005 YP_001920042.1 identified by match to protein family HMM PF00392 YP_001920043.1 identified by match to protein family HMM PF00015 YP_001920044.1 identified by match to protein family HMM PF04914; match to protein family HMM PF04918 YP_001920045.1 identified by glimmer; putative YP_001920046.1 identified by match to protein family HMM PF00501 YP_001920047.1 identified by match to protein family HMM PF03062 YP_001920048.1 identified by match to protein family HMM PF00550; match to protein family HMM TIGR01688 YP_001920049.1 identified by glimmer; putative YP_001920050.1 identified by match to protein family HMM PF03009 YP_001920051.1 identified by match to protein family HMM PF01408 YP_001920055.1 identified by match to protein family HMM TIGR02910 YP_001920056.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide YP_001920057.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM TIGR02912 YP_001920058.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001920059.1 identified by match to protein family HMM PF07690 YP_001920060.1 identified by match to protein family HMM PF00375 YP_001920061.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001920062.1 identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093 YP_001920063.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_001920064.1 identified by match to protein family HMM PF07690 YP_001920065.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_001920066.1 identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753 YP_001920069.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001920071.1 identified by match to protein family HMM PF01261; match to protein family HMM TIGR00587 YP_001920072.1 identified by match to protein family HMM PF01266 YP_001920073.1 identified by match to protein family HMM PF03734 YP_001920074.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001920075.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_001920076.1 identified by match to protein family HMM PF01182; match to protein family HMM TIGR00502 YP_001920077.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998 YP_001920078.1 identified by match to protein family HMM PF03932 YP_001920079.1 identified by match to protein family HMM PF02632 YP_001920080.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_001920081.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_001920082.1 identified by match to protein family HMM PF00376 YP_001920083.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001920084.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001920086.1 identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119 YP_001920087.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118 YP_001920088.1 identified by match to protein family HMM PF02559 YP_001920090.1 identified by match to protein family HMM PF01473 YP_001920091.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00754 YP_001920092.1 identified by match to protein family HMM PF00015 YP_001920094.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_001920095.1 identified by match to protein family HMM PF00027 YP_001920096.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001920097.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_001920098.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644 YP_001920099.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_001920100.1 identified by glimmer; putative YP_001920101.1 identified by match to protein family HMM PF02588 YP_001920102.1 identified by match to protein family HMM PF04647 YP_001920103.1 identified by glimmer; putative YP_001920104.1 identified by match to protein family HMM PF02518 YP_001920106.1 identified by glimmer; putative YP_001920107.1 identified by match to protein family HMM PF06803 YP_001920110.1 identified by match to protein family HMM PF00515; match to protein family HMM PF01381 YP_001920111.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001920112.1 identified by glimmer; putative YP_001920113.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346 YP_001920114.1 identified by match to protein family HMM PF00269 YP_001920115.1 identified by match to protein family HMM PF03576 YP_001920117.1 identified by match to protein family HMM PF01171 YP_001920119.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001920121.1 identified by match to protein family HMM PF01522 YP_001920122.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001920123.1 identified by glimmer; putative YP_001920124.1 identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576 YP_001920125.1 identified by match to protein family HMM PF00005 YP_001920126.1 identified by match to protein family HMM PF00440 YP_001920129.1 identified by match to protein family HMM PF00266 YP_001920130.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_001920131.1 identified by match to protein family HMM PF02659 YP_001920132.1 identified by match to protein family HMM PF01475 YP_001920133.1 identified by match to protein family HMM PF00950 YP_001920134.1 identified by match to protein family HMM PF00005 YP_001920137.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_001920138.1 identified by match to protein family HMM PF01694 YP_001920140.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_001920141.1 identified by match to protein family HMM PF00535 YP_001920142.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001920143.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001920144.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383 YP_001920145.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_001920146.1 identified by glimmer; putative YP_001920147.1 identified by match to protein family HMM PF02550 YP_001920148.1 identified by match to protein family HMM PF00269 YP_001920149.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001920150.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_001920151.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 YP_001920153.1 identified by match to protein family HMM PF00155 YP_001920154.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_001920155.1 identified by match to protein family HMM PF01063 YP_001920156.1 identified by match to protein family HMM PF03961 YP_001920157.1 identified by match to protein family HMM PF01584 YP_001920158.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_001920159.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01339 YP_001920160.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_001920161.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194 YP_001920162.1 identified by match to protein family HMM PF04509 YP_001920163.1 identified by match to protein family HMM PF00072 YP_001920164.1 identified by match to protein family HMM PF01584 YP_001920165.1 identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397 YP_001920166.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001920167.1 identified by match to protein family HMM PF04316 YP_001920169.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492 YP_001920170.1 identified by match to protein family HMM PF00669; match to protein family HMM TIGR02550 YP_001920171.1 binds to flagellin and appears to stabilize flagellin during flagella assembly YP_001920172.1 identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202 YP_001920173.1 identified by match to protein family HMM PF03646 YP_001920175.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_001920176.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195 YP_001920179.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001920180.1 identified by match to protein family HMM PF00535 YP_001920181.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001920182.1 identified by match to protein family HMM PF01973 YP_001920184.1 identified by match to protein family HMM PF01973 YP_001920185.1 undetermined role; similar to CarB protein but much smaller YP_001920186.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_001920187.1 identified by match to protein family HMM PF02348 YP_001920189.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001920191.1 identified by glimmer; putative YP_001920193.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666 YP_001920194.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001920196.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001920197.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00884; match to protein family HMM PF07719 YP_001920198.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001920199.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_001920200.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_001920201.1 identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205 YP_001920202.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_001920203.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001920205.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR03496; match to protein family HMM TIGR03497 YP_001920206.1 identified by match to protein family HMM TIGR02473 YP_001920207.1 identified by match to protein family HMM PF02120 YP_001920208.1 identified by match to protein family HMM PF03963 YP_001920209.1 identified by match to protein family HMM TIGR02530 YP_001920210.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR03506 YP_001920211.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR03506 YP_001920212.1 identified by match to protein family HMM PF06289 YP_001920213.1 identified by match to protein family HMM PF01618 YP_001920214.1 identified by match to protein family HMM PF00691 YP_001920215.1 identified by match to protein family HMM PF03748 YP_001920217.1 identified by match to protein family HMM PF00813; match to protein family HMM TIGR01103 YP_001920218.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402 YP_001920219.1 FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined YP_001920220.1 membrane protein involved in the flagellar export apparatus YP_001920221.1 positive regulator of class III flagellar genes YP_001920222.1 identified by match to protein family HMM PF01656 YP_001920223.1 identified by match to protein family HMM PF07238 YP_001920224.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937 YP_001920227.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene YP_001920228.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene YP_001920229.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_001920230.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001920232.1 identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001920234.1 identified by glimmer; putative YP_001920235.1 identified by match to protein family HMM PF05362 YP_001920236.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886 YP_001920237.1 binds to sigma F preventing its association with RNA polymerase during sporulation YP_001920238.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore. YP_001920239.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838 YP_001920240.1 identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845 YP_001920241.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839 YP_001920242.1 identified by match to protein family HMM PF00122 YP_001920243.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360 YP_001920244.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_001920245.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001920246.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination YP_001920247.1 identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867 YP_001920248.1 identified by glimmer; putative YP_001920249.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001920250.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001920251.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_001920252.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_001920253.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001920254.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_001920255.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_001920256.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_001920257.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_001920258.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_001920259.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_001920260.1 identified by match to protein family HMM PF01230 YP_001920261.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001920262.1 identified by match to protein family HMM PF09424 YP_001920263.1 identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856 YP_001920264.1 identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876 YP_001920265.1 identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277 YP_001920266.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_001920267.1 identified by match to protein family HMM PF01219; match to protein family HMM PF01569 YP_001920268.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001920269.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_001920270.1 identified by match to protein family HMM PF00627 YP_001920271.1 identified by match to protein family HMM PF00571; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001920272.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001920273.1 identified by match to protein family HMM TIGR02906 YP_001920274.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_001920275.1 synthesizes RNA primers at the replication forks YP_001920276.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_001920277.1 identified by match to protein family HMM PF04816 YP_001920278.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_001920279.1 identified by glimmer; putative YP_001920280.1 identified by match to protein family HMM PF06114 YP_001920281.1 identified by match to protein family HMM PF01381 YP_001920286.1 identified by match to protein family HMM PF09393 YP_001920287.1 identified by match to protein family HMM PF08890 YP_001920289.1 identified by match to protein family HMM PF01476 YP_001920293.1 identified by match to protein family HMM PF04865 YP_001920296.1 identified by glimmer; putative YP_001920297.1 identified by glimmer; putative YP_001920298.1 identified by match to protein family HMM TIGR01669 YP_001920300.1 identified by match to protein family HMM PF01183 YP_001920302.1 identified by match to protein family HMM PF00583 YP_001920305.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_001920307.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001920308.1 amylomaltase; acts to release glucose from maltodextrins YP_001920309.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_001920310.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001920311.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001920312.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex YP_001920313.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF02702 YP_001920314.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001920315.1 identified by match to protein family HMM PF06325 YP_001920316.1 Involved in the metabolism of aromatic amino acids YP_001920317.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001920318.1 identified by match to protein family HMM PF02811 YP_001920319.1 identified by match to protein family HMM PF00583 YP_001920320.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001920321.1 identified by match to protein family HMM PF00708 YP_001920322.1 identified by match to protein family HMM PF00334 YP_001920323.1 identified by match to protein family HMM PF01547 YP_001920324.1 identified by match to protein family HMM PF00528 YP_001920325.1 identified by match to protein family HMM PF00528 YP_001920326.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187 YP_001920327.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001920329.1 identified by glimmer; putative YP_001920330.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001920331.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_001920332.1 identified by match to protein family HMM PF09560; match to protein family HMM TIGR02832 YP_001920333.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_001920334.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156 YP_001920335.1 identified by match to protein family HMM PF01909 YP_001920336.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001920337.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257 YP_001920338.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_001920339.1 identified by glimmer; putative YP_001920340.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_001920341.1 identified by match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711 YP_001920342.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_001920343.1 identified by match to protein family HMM PF03435 YP_001920344.1 identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047 YP_001920345.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_001920346.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_001920347.1 identified by match to protein family HMM PF00465; match to protein family HMM PF01761 YP_001920348.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001920349.1 identified by match to protein family HMM PF04055 YP_001920351.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001920352.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001920353.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001920354.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_001920355.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_001920357.1 identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966; match to protein family HMM TIGR01129 YP_001920358.1 identified by match to protein family HMM PF01368 YP_001920359.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001920360.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_001920361.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_001920362.1 identified by match to protein family HMM PF00753 YP_001920363.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001920364.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001920365.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001920367.1 identified by match to protein family HMM PF04474 YP_001920369.1 identified by match to protein family HMM PF01022; match to protein family HMM PF02579; match to protein family HMM PF08279 YP_001920370.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_001920371.1 identified by match to protein family HMM PF04309 YP_001920372.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_001920373.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_001920374.1 identified by match to protein family HMM PF07992 YP_001920375.1 identified by match to protein family HMM PF07892 YP_001920376.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive YP_001920377.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_001920378.1 identified by match to protein family HMM PF03861 YP_001920379.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898 YP_001920380.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317 YP_001920381.1 identified by match to protein family HMM PF00324 YP_001920384.1 identified by match to protein family HMM PF02559 YP_001920386.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_001920387.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_001920388.1 identified by similarity to GB:CAJ67405.1 YP_001920389.1 identified by glimmer; putative YP_001920390.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_001920391.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_001920392.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_001920393.1 identified by match to protein family HMM PF01594 YP_001920394.1 identified by glimmer; putative YP_001920396.1 identified by glimmer; putative YP_001920397.1 identified by glimmer; putative YP_001920398.1 identified by glimmer; putative YP_001920399.1 identified by match to protein family HMM PF00015; match to protein family HMM PF02743 YP_001920400.1 identified by match to protein family HMM PF00085 YP_001920401.1 identified by glimmer; putative YP_001920402.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_001920403.1 identified by match to protein family HMM PF06738 YP_001920405.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001920406.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367 YP_001920407.1 identified by match to protein family HMM PF00005 YP_001920408.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_001920409.1 identified by glimmer; putative YP_001920410.1 identified by glimmer; putative YP_001920412.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001920414.1 identified by match to protein family HMM PF01244 YP_001920415.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001920416.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001920417.1 identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552 YP_001920418.1 identified by match to protein family HMM PF01957 YP_001920419.1 identified by match to protein family HMM PF01145 YP_001920420.1 identified by match to protein family HMM PF00375 YP_001920422.1 identified by match to protein family HMM PF01554 YP_001920423.1 identified by glimmer; putative YP_001920424.1 identified by match to protein family HMM PF00376 YP_001920425.1 identified by match to protein family HMM PF00497 YP_001920426.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001920427.1 identified by match to protein family HMM PF00005 YP_001920429.1 identified by match to protein family HMM PF00654 YP_001920430.1 identified by match to protein family HMM PF00248 YP_001920431.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857 YP_001920432.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_001920433.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001920434.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_001920435.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001920436.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639 YP_001920437.1 involved in de novo purine biosynthesis YP_001920438.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001920443.1 identified by glimmer; putative YP_001920444.1 identified by match to protein family HMM PF02629 YP_001920445.1 identified by match to protein family HMM PF04397 YP_001920447.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001920448.1 identified by match to protein family HMM PF00440 YP_001920449.1 identified by match to protein family HMM PF02687 YP_001920450.1 identified by match to protein family HMM PF00005 YP_001920452.1 identified by match to protein family HMM PF00005 YP_001920453.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001920454.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001920458.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001920459.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001920462.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate YP_001920465.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_001920466.1 identified by match to protein family HMM PF01047 YP_001920467.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02954 YP_001920469.1 identified by match to protein family HMM PF09335 YP_001920470.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001920473.1 identified by match to protein family HMM PF01047 YP_001920474.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747 YP_001920475.1 identified by match to protein family HMM PF00550 YP_001920476.1 identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151 YP_001920477.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_001920478.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001920479.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150 YP_001920480.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_001920481.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_001920482.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514 YP_001920483.1 identified by match to protein family HMM TIGR00515 YP_001920484.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_001920485.1 identified by glimmer; putative YP_001920486.1 identified by match to protein family HMM PF09021 YP_001920487.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_001920488.1 identified by match to protein family HMM PF04392 YP_001920489.1 identified by match to protein family HMM PF02653 YP_001920490.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463 YP_001920491.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; match to protein family HMM TIGR03311 YP_001920493.1 identified by match to protein family HMM PF00994 YP_001920494.1 identified by match to protein family HMM PF01967; match to protein family HMM TIGR00581 YP_001920495.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_001920496.1 identified by match to protein family HMM PF03473 YP_001920499.1 identified by glimmer; putative YP_001920500.1 identified by glimmer; putative YP_001920502.1 identified by match to protein family HMM PF00004 YP_001920503.1 identified by match to protein family HMM PF01381 YP_001920504.1 identified by match to protein family HMM PF01742; match to protein family HMM PF07951; match to protein family HMM PF07952; match to protein family HMM PF07953 YP_001920505.1 identified by match to protein family HMM PF01742; match to protein family HMM PF07953; match to protein family HMM PF08470 YP_001920506.1 identified by match to protein family HMM PF06597 YP_001920510.1 identified by glimmer; putative YP_001920511.1 identified by glimmer; putative YP_001920513.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_001920514.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR03402 YP_001920515.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR03419 YP_001920516.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001920517.1 identified by match to protein family HMM PF05239 YP_001920518.1 identified by match to protein family HMM PF01594 YP_001920519.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001920520.1 identified by match to protein family HMM PF06135 YP_001920521.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_001920522.1 identified by match to protein family HMM PF06949 YP_001920523.1 identified by match to protein family HMM PF01475 YP_001920524.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_001920525.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_001920526.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_001920527.1 identified by match to protein family HMM PF01596; match to protein family HMM PF05175; match to protein family HMM PF08241 YP_001920528.1 identified by match to protein family HMM PF01136 YP_001920529.1 identified by match to protein family HMM PF00905 YP_001920530.1 sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment YP_001920531.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_001920532.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_001920533.1 identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065 YP_001920534.1 identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854 YP_001920535.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation YP_001920536.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin YP_001920537.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_001920538.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_001920539.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_001920540.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001920541.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001920542.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136 YP_001920543.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_001920544.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_001920545.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972 YP_001920546.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_001920547.1 identified by match to protein family HMM PF04459 YP_001920548.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001920549.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001920550.1 identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836 YP_001920552.1 identified by match to protein family HMM PF00710 YP_001920553.1 identified by match to protein family HMM PF00860 YP_001920554.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255 YP_001920555.1 identified by match to protein family HMM PF04025 YP_001920556.1 Essential for recycling GMP and indirectly, cGMP YP_001920557.1 identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690 YP_001920558.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_001920559.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_001920560.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001920561.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_001920562.1 identified by match to protein family HMM PF04298 YP_001920563.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_001920564.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_001920565.1 identified by match to protein family HMM PF00481 YP_001920566.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714 YP_001920567.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_001920568.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_001920569.1 identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378 YP_001920570.1 required for 70S ribosome assembly YP_001920571.1 identified by match to protein family HMM PF03780 YP_001920572.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599 YP_001920573.1 catalyzes branch migration in Holliday junction intermediates YP_001920574.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_001920575.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001920577.1 identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871 YP_001920578.1 identified by match to protein family HMM PF05636 YP_001920579.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_001920580.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_001920581.1 identified by match to protein family HMM PF02620 YP_001920582.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001920583.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_001920584.1 carries the fatty acid chain in fatty acid biosynthesis YP_001920585.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_001920586.1 identified by match to protein family HMM PF04055 YP_001920587.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168 YP_001920588.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_001920589.1 identified by match to protein family HMM PF04297; match to protein family HMM PF04967 YP_001920590.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_001920591.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001920593.1 Essential for efficient processing of 16S rRNA YP_001920594.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001920595.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001920596.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_001920597.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001920598.1 identified by match to protein family HMM PF02021 YP_001920599.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368 YP_001920600.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_001920601.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_001920602.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_001920603.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001920604.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001920605.1 Catalyzes the phosphorylation of UMP to UDP YP_001920606.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001920607.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_001920608.1 identified by match to protein family HMM PF01148 YP_001920609.1 identified by match to protein family HMM PF01594 YP_001920610.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001920611.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_001920612.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_001920613.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity YP_001920614.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_001920615.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001920616.1 identified by match to protein family HMM PF04296 YP_001920617.1 identified by match to protein family HMM PF01248 YP_001920618.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_001920619.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_001920620.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_001920621.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_001920622.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_001920623.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001920624.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_001920625.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_001920626.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_001920627.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive YP_001920628.1 identified by match to protein family HMM PF00574; match to protein family HMM PF01343 YP_001920629.1 identified by match to protein family HMM PF01580; match to protein family HMM PF09397 YP_001920630.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 YP_001920631.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_001920632.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_001920633.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_001920634.1 identified by match to protein family HMM PF04232 YP_001920635.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_001920636.1 identified by match to protein family HMM PF04070 YP_001920637.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001920638.1 identified by glimmer; putative YP_001920639.1 identified by match to protein family HMM PF00515 YP_001920640.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_001920641.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_001920642.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506 YP_001920643.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001920644.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001920645.1 identified by match to protein family HMM PF00465 YP_001920646.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_001920647.1 identified by match to protein family HMM PF00294 YP_001920648.1 identified by match to protein family HMM PF06845 YP_001920649.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_001920650.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_001920651.1 identified by match to protein family HMM PF01261 YP_001920652.1 uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function YP_001920654.1 identified by match to protein family HMM PF07969 YP_001920655.1 identified by glimmer; putative YP_001920656.1 identified by match to protein family HMM PF00293 YP_001920657.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_001920658.1 identified by glimmer; putative YP_001920659.1 identified by glimmer; putative YP_001920660.1 identified by match to protein family HMM PF00654 YP_001920661.1 identified by match to protein family HMM PF00465; match to protein family HMM PF01761 YP_001920664.1 identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00970 YP_001920666.1 identified by match to protein family HMM PF00149 YP_001920667.1 identified by match to protein family HMM PF00560; match to protein family HMM PF01473 YP_001920668.1 identified by match to protein family HMM PF05343 YP_001920669.1 identified by glimmer; putative YP_001920671.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001920672.1 identified by glimmer; putative YP_001920673.1 identified by match to protein family HMM PF02492 YP_001920675.1 identified by match to protein family HMM PF03773 YP_001920676.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_001920678.1 identified by match to protein family HMM PF00892 YP_001920679.1 identified by glimmer; putative YP_001920680.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001920681.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; match to protein family HMM PF04851 YP_001920682.1 identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500 YP_001920683.1 identified by glimmer; putative YP_001920685.1 identified by glimmer; putative YP_001920686.1 identified by match to protein family HMM PF02463 YP_001920687.1 identified by glimmer; putative YP_001920691.1 identified by glimmer; putative YP_001920694.1 identified by match to protein family HMM PF00376 YP_001920698.1 identified by glimmer; putative YP_001920700.1 identified by glimmer; putative YP_001920701.1 identified by match to protein family HMM PF01012 YP_001920702.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001920703.1 identified by match to protein family HMM PF02652; match to protein family HMM PF03600; match to protein family HMM TIGR00795 YP_001920704.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_001920705.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001920706.1 identified by match to protein family HMM PF00005 YP_001920707.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_001920708.1 identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824 YP_001920709.1 identified by match to protein family HMM PF03609 YP_001920710.1 identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828 YP_001920711.1 identified by match to protein family HMM PF06115 YP_001920712.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_001920713.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01581 YP_001920714.1 identified by match to protein family HMM PF00005 YP_001920716.1 identified by match to protein family HMM PF09335 YP_001920717.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178 YP_001920718.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP YP_001920721.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080 YP_001920722.1 identified by glimmer; putative YP_001920723.1 identified by match to protein family HMM PF02366 YP_001920724.1 identified by match to protein family HMM PF01047 YP_001920725.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001920726.1 identified by match to protein family HMM PF01207 YP_001920727.1 identified by glimmer; putative YP_001920728.1 identified by match to protein family HMM PF02696 YP_001920730.1 identified by match to protein family HMM PF09515 YP_001920731.1 identified by match to protein family HMM PF03070 YP_001920732.1 identified by match to protein family HMM PF06354 YP_001920733.1 identified by match to protein family HMM PF00226 YP_001920734.1 identified by match to protein family HMM PF07690 YP_001920735.1 identified by match to protein family HMM PF07690 YP_001920736.1 identified by match to protein family HMM PF00005 YP_001920737.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001920738.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524 YP_001920739.1 identified by match to protein family HMM PF00753 YP_001920741.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_001920742.1 identified by match to protein family HMM PF00301; match to protein family HMM PF00441; match to protein family HMM PF00766; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001920743.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_001920746.1 identified by match to protein family HMM PF04647 YP_001920748.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00254 YP_001920749.1 identified by match to protein family HMM PF00324 YP_001920750.1 identified by glimmer; putative YP_001920751.1 identified by match to protein family HMM PF00376 YP_001920752.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001920753.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001920754.1 identified by glimmer; putative YP_001920755.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954 YP_001920756.1 identified by match to protein family HMM PF02667 YP_001920757.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_001920758.1 identified by match to protein family HMM PF01144 YP_001920759.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001920760.1 identified by match to protein family HMM PF00728; match to protein family HMM TIGR01634 YP_001920761.1 identified by match to protein family HMM PF00465 YP_001920762.1 identified by match to protein family HMM PF00376 YP_001920765.1 identified by match to protein family HMM PF00936 YP_001920766.1 identified by match to protein family HMM PF00936 YP_001920768.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901 YP_001920769.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_001920770.1 identified by match to protein family HMM PF00936 YP_001920773.1 identified by match to protein family HMM TIGR02529 YP_001920775.1 identified by match to protein family HMM PF03319 YP_001920776.1 identified by match to protein family HMM PF01512 YP_001920777.1 identified by match to protein family HMM PF00936 YP_001920778.1 identified by match to protein family HMM PF05899; match to protein family HMM PF06249 YP_001920779.1 identified by match to protein family HMM PF00936 YP_001920780.1 identified by match to protein family HMM TIGR02518 YP_001920781.1 identified by match to protein family HMM PF06130 YP_001920782.1 identified by match to protein family HMM PF00936 YP_001920783.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_001920784.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_001920785.1 identified by match to protein family HMM PF01497 YP_001920786.1 identified by match to protein family HMM PF01032 YP_001920787.1 identified by match to protein family HMM PF00005 YP_001920788.1 identified by glimmer; putative YP_001920789.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001920791.1 identified by glimmer; putative YP_001920792.1 identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453 YP_001920793.1 identified by glimmer; putative YP_001920794.1 identified by match to protein family HMM PF01757 YP_001920796.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001920798.1 identified by match to protein family HMM PF01910 YP_001920799.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_001920803.1 identified by glimmer; putative YP_001920805.1 identified by glimmer; putative YP_001920806.1 identified by match to protein family HMM PF02056 YP_001920807.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610 YP_001920808.1 identified by match to protein family HMM PF02302 YP_001920809.1 identified by match to protein family HMM PF02255 YP_001920810.1 identified by match to protein family HMM PF01869 YP_001920811.1 identified by match to protein family HMM PF05913 YP_001920812.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_001920813.1 identified by match to protein family HMM PF02588 YP_001920814.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001920815.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001920817.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001920818.1 identified by match to protein family HMM PF00583 YP_001920819.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001920821.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995 YP_001920822.1 identified by match to protein family HMM PF00232 YP_001920823.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001920825.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_001920826.1 identified by match to protein family HMM PF08281 YP_001920828.1 identified by match to protein family HMM PF00015 YP_001920829.1 identified by match to protein family HMM PF01522 YP_001920830.1 identified by glimmer; putative YP_001920831.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_001920832.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source YP_001920833.1 identified by match to protein family HMM PF00005 YP_001920834.1 identified by match to protein family HMM PF02653 YP_001920835.1 identified by match to protein family HMM PF00532 YP_001920836.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001920837.1 identified by match to protein family HMM PF06094 YP_001920838.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline YP_001920839.1 identified by match to protein family HMM PF06166 YP_001920840.1 identified by match to protein family HMM PF06149 YP_001920841.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001920842.1 identified by match to protein family HMM PF01041 YP_001920843.1 identified by match to protein family HMM PF02348 YP_001920846.1 identified by glimmer; putative YP_001920848.1 identified by match to protein family HMM PF01973 YP_001920849.1 identified by glimmer; putative YP_001920850.1 identified by glimmer; putative YP_001920851.1 identified by glimmer; putative YP_001920853.1 identified by match to protein family HMM PF00483; match to protein family HMM PF00571 YP_001920854.1 identified by match to protein family HMM PF00583 YP_001920855.1 identified by match to protein family HMM PF02350 YP_001920856.1 identified by match to protein family HMM PF02585 YP_001920857.1 identified by glimmer; putative YP_001920858.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666 YP_001920859.1 identified by match to protein family HMM PF04657 YP_001920862.1 identified by match to protein family HMM PF00027 YP_001920863.1 identified by match to protein family HMM PF01699 YP_001920864.1 identified by match to protein family HMM PF04055 YP_001920865.1 identified by match to protein family HMM PF03992 YP_001920866.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584 YP_001920868.1 identified by glimmer; putative YP_001920869.1 identified by glimmer; putative YP_001920870.1 identified by match to protein family HMM PF00165; match to protein family HMM PF07883 YP_001920871.1 identified by glimmer; putative YP_001920872.1 identified by match to protein family HMM PF00375 YP_001920873.1 identified by match to protein family HMM PF04607 YP_001920874.1 identified by match to protein family HMM PF01966 YP_001920875.1 identified by match to protein family HMM PF03446 YP_001920876.1 identified by match to protein family HMM PF00291 YP_001920878.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_001920879.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001920881.1 identified by match to protein family HMM PF04456 YP_001920882.1 identified by match to protein family HMM PF06081 YP_001920883.1 identified by glimmer; putative YP_001920884.1 identified by match to protein family HMM PF00392 YP_001920885.1 identified by match to protein family HMM PF01048; match to protein family HMM TIGR01718 YP_001920886.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670 YP_001920887.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_001920888.1 identified by match to protein family HMM PF00456 YP_001920889.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001920890.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_001920891.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00875 YP_001920892.1 identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_001920894.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001920895.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_001920896.1 identified by glimmer; putative YP_001920899.1 identified by match to protein family HMM PF01926 YP_001920900.1 identified by match to protein family HMM PF01041 YP_001920901.1 identified by match to protein family HMM PF00376; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001920902.1 identified by glimmer; putative YP_001920906.1 identified by match to protein family HMM PF00082 YP_001920907.1 identified by match to protein family HMM PF00082 YP_001920908.1 identified by match to protein family HMM PF00171 YP_001920909.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001920910.1 Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine YP_001920911.1 identified by match to protein family HMM PF00293 YP_001920912.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001920915.1 identified by glimmer; putative YP_001920916.1 identified by match to protein family HMM PF00392 YP_001920917.1 identified by match to protein family HMM PF00005 YP_001920919.1 identified by glimmer; putative YP_001920920.1 identified by glimmer; putative YP_001920921.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001920922.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001920923.1 identified by match to protein family HMM PF01743 YP_001920926.1 identified by match to protein family HMM PF04055 YP_001920927.1 identified by glimmer; putative YP_001920928.1 identified by match to protein family HMM PF04307 YP_001920930.1 decatenates replicating daughter chromosomes YP_001920931.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714 YP_001920932.1 identified by match to protein family HMM PF00903 YP_001920933.1 identified by match to protein family HMM PF02698 YP_001920934.1 identified by match to protein family HMM PF00293 YP_001920935.1 identified by match to protein family HMM PF01547 YP_001920936.1 identified by match to protein family HMM PF00528 YP_001920937.1 identified by match to protein family HMM PF00528 YP_001920938.1 identified by match to protein family HMM PF04041 YP_001920939.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001920941.1 identified by match to protein family HMM PF00128 YP_001920942.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_001920943.1 identified by match to protein family HMM PF00480 YP_001920944.1 identified by match to protein family HMM PF07690 YP_001920945.1 identified by match to protein family HMM PF01473; match to protein family HMM PF09394 YP_001920946.1 identified by glimmer; putative YP_001920947.1 identified by match to protein family HMM PF08279 YP_001920948.1 identified by match to protein family HMM PF01965 YP_001920950.1 identified by match to protein family HMM PF04266; match to protein family HMM PF06171 YP_001920951.1 identified by match to protein family HMM PF01071; match to protein family HMM PF02655 YP_001920952.1 identified by match to protein family HMM PF07690 YP_001920953.1 identified by match to protein family HMM PF00587; match to protein family HMM PF03129 YP_001920955.1 identified by match to protein family HMM PF03572 YP_001920957.1 identified by match to protein family HMM PF00165; match to protein family HMM PF09370 YP_001920958.1 identified by match to protein family HMM PF06792 YP_001920959.1 identified by match to protein family HMM PF09370 YP_001920960.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220 YP_001920961.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_001920962.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001920963.1 identified by match to protein family HMM PF01155 YP_001920964.1 identified by match to protein family HMM PF01891 YP_001920965.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454 YP_001920966.1 identified by match to protein family HMM PF00005 YP_001920968.1 identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462 YP_001920969.1 identified by match to protein family HMM PF00082 YP_001920970.1 identified by match to protein family HMM PF00082 YP_001920971.1 3'-5' exonuclease of DNA polymerase III YP_001920973.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001920974.1 identified by match to protein family HMM PF00929 YP_001920976.1 identified by glimmer; putative YP_001920977.1 identified by glimmer; putative YP_001920978.1 identified by match to protein family HMM PF00005 YP_001920979.1 identified by glimmer; putative YP_001920980.1 identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205 YP_001920981.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00881 YP_001920982.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001920983.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391 YP_001920984.1 identified by match to protein family HMM PF00374 YP_001920985.1 identified by match to protein family HMM TIGR00072 YP_001920986.1 identified by match to protein family HMM PF01155 YP_001920987.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143 YP_001920988.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074 YP_001920989.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124 YP_001920990.1 identified by match to protein family HMM PF01924 YP_001920991.1 identified by glimmer; putative YP_001920992.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512 YP_001920993.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001920994.1 identified by glimmer; putative YP_001920995.1 identified by match to protein family HMM PF00860 YP_001920996.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001920998.1 identified by match to protein family HMM PF03372 YP_001920999.1 identified by match to protein family HMM PF00005 YP_001921001.1 identified by match to protein family HMM PF00005 YP_001921002.1 identified by match to protein family HMM PF02687 YP_001921003.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001921004.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001921005.1 identified by match to protein family HMM PF00892 YP_001921007.1 identified by match to protein family HMM PF08000 YP_001921009.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001921010.1 identified by match to protein family HMM PF07690 YP_001921013.1 identified by glimmer; putative YP_001921016.1 identified by match to protein family HMM PF00515 YP_001921017.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_001921018.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_001921019.1 identified by match to protein family HMM PF00488 YP_001921020.1 identified by match to protein family HMM PF01047 YP_001921022.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001921024.1 catalyzes the reversible formation of methenyl-H(4)methanopterin from N(5)-formyl-H(4)methanopterin YP_001921025.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001921026.1 identified by glimmer; putative YP_001921028.1 identified by match to protein family HMM PF00480 YP_001921029.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_001921030.1 identified by similarity to SP:P29166; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512 YP_001921031.1 unknown function YP_001921033.1 identified by match to protein family HMM PF00324 YP_001921034.1 identified by match to protein family HMM PF09719; match to protein family HMM TIGR01909 YP_001921035.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229 YP_001921036.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229 YP_001921037.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229 YP_001921040.1 identified by match to protein family HMM PF08238 YP_001921041.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001921042.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR02290 YP_001921043.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_001921044.1 identified by match to protein family HMM PF00248 YP_001921045.1 identified by match to protein family HMM PF06580 YP_001921046.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_001921047.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774 YP_001921048.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_001921050.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_001921051.1 identified by glimmer; putative YP_001921052.1 identified by match to protein family HMM PF00293 YP_001921053.1 identified by match to protein family HMM PF00293 YP_001921054.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_001921057.1 identified by match to protein family HMM PF01593; match to protein family HMM TIGR02734 YP_001921059.1 identified by match to protein family HMM PF00005 YP_001921061.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455 YP_001921062.1 identified by match to protein family HMM PF02308 YP_001921063.1 identified by match to protein family HMM PF03009 YP_001921064.1 identified by match to protein family HMM PF02308 YP_001921066.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_001921067.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001921068.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_001921069.1 identified by match to protein family HMM PF04055 YP_001921070.1 This protein performs the mismatch recognition step during the DNA repair process YP_001921071.1 identified by glimmer; putative YP_001921072.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992 YP_001921073.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403 YP_001921074.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404 YP_001921075.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_001921076.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_001921077.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_001921078.1 identified by match to protein family HMM PF06838 YP_001921079.1 Represses a number of genes involved in the response to DNA damage YP_001921083.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_001921084.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011 YP_001921085.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001921086.1 identified by match to protein family HMM PF01381 YP_001921087.1 identified by match to protein family HMM PF00959; match to protein family HMM PF01473 YP_001921090.1 identified by match to protein family HMM PF02368 YP_001921091.1 identified by match to protein family HMM PF01345; match to protein family HMM PF02368; match to protein family HMM TIGR01451 YP_001921093.1 identified by glimmer; putative YP_001921095.1 identified by match to protein family HMM PF09684 YP_001921096.1 identified by match to protein family HMM PF04865 YP_001921103.1 identified by glimmer; putative YP_001921109.1 identified by glimmer; putative YP_001921111.1 identified by glimmer; putative YP_001921112.1 identified by match to protein family HMM PF00574 YP_001921113.1 identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539 YP_001921118.1 identified by glimmer; putative YP_001921119.1 identified by match to protein family HMM PF00589 YP_001921122.1 identified by glimmer; putative YP_001921124.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001921126.1 identified by glimmer; putative YP_001921127.1 identified by glimmer; putative YP_001921128.1 identified by match to protein family HMM PF07875 YP_001921130.1 identified by glimmer; putative YP_001921131.1 identified by glimmer; putative YP_001921133.1 identified by glimmer; putative YP_001921134.1 identified by glimmer; putative YP_001921135.1 identified by glimmer; putative YP_001921137.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_001921138.1 identified by match to protein family HMM PF01656 YP_001921141.1 identified by match to protein family HMM PF01381 YP_001921142.1 identified by match to protein family HMM PF01381 YP_001921143.1 identified by glimmer; putative YP_001921144.1 identified by glimmer; putative YP_001921147.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_001921148.1 identified by glimmer; putative YP_001921149.1 identified by glimmer; putative YP_001921150.1 identified by match to protein family HMM PF00583 YP_001921151.1 these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001921152.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_001921153.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_001921154.1 identified by match to protein family HMM PF07866 YP_001921155.1 identified by match to protein family HMM PF00805 YP_001921156.1 identified by match to protein family HMM PF02133; match to protein family HMM TIGR02358 YP_001921157.1 identified by glimmer; putative YP_001921158.1 identified by glimmer; putative YP_001921159.1 identified by glimmer; putative YP_001921160.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02954 YP_001921162.1 identified by match to protein family HMM PF00293 YP_001921163.1 identified by match to protein family HMM PF03734 YP_001921164.1 identified by match to protein family HMM PF02811 YP_001921165.1 identified by glimmer; putative YP_001921166.1 identified by match to protein family HMM PF06571 YP_001921169.1 identified by glimmer; putative YP_001921171.1 identified by match to protein family HMM PF00005 YP_001921172.1 identified by match to protein family HMM PF00392 YP_001921174.1 identified by match to protein family HMM PF01325 YP_001921175.1 identified by match to protein family HMM PF04023 YP_001921176.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670 YP_001921177.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001921179.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001921180.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001921182.1 identified by match to protein family HMM PF00005 YP_001921184.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_001921185.1 identified by glimmer; putative YP_001921186.1 identified by glimmer; putative YP_001921187.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001921188.1 identified by match to protein family HMM PF00580 YP_001921189.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686 YP_001921190.1 identified by match to protein family HMM PF00027 YP_001921191.1 identified by match to protein family HMM PF00583 YP_001921192.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_001921193.1 identified by match to protein family HMM PF00581 YP_001921194.1 identified by glimmer; putative YP_001921195.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_001921196.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001921197.1 identified by match to protein family HMM PF01144 YP_001921198.1 identified by match to protein family HMM PF00378 YP_001921199.1 identified by match to protein family HMM PF00015 YP_001921201.1 identified by match to protein family HMM PF00132 YP_001921202.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883 YP_001921205.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_001921206.1 identified by glimmer; putative YP_001921207.1 identified by match to protein family HMM PF00496 YP_001921208.1 identified by match to protein family HMM PF00528 YP_001921209.1 identified by match to protein family HMM PF00528 YP_001921210.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_001921211.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_001921212.1 identified by match to protein family HMM PF03733 YP_001921213.1 identified by match to protein family HMM PF01712 YP_001921214.1 identified by match to protein family HMM PF02698 YP_001921216.1 identified by glimmer; putative YP_001921217.1 identified by match to protein family HMM PF03553 YP_001921218.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001921219.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001921224.1 identified by match to protein family HMM PF02272; match to protein family HMM PF07973 YP_001921225.1 identified by match to protein family HMM PF00936 YP_001921226.1 identified by match to protein family HMM PF01512 YP_001921227.1 identified by match to protein family HMM PF00171 YP_001921228.1 identified by match to protein family HMM PF03319 YP_001921230.1 identified by match to protein family HMM TIGR02529 YP_001921231.1 identified by match to protein family HMM PF06130 YP_001921232.1 identified by match to protein family HMM PF00936 YP_001921233.1 identified by match to protein family HMM PF00936 YP_001921234.1 identified by match to protein family HMM PF00936 YP_001921235.1 identified by match to protein family HMM PF00936 YP_001921236.1 identified by match to protein family HMM PF00465 YP_001921238.1 identified by glimmer; putative YP_001921239.1 identified by match to protein family HMM PF00375 YP_001921242.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231 YP_001921243.1 identified by match to protein family HMM PF00561 YP_001921245.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_001921246.1 identified by glimmer; putative YP_001921247.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001921248.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08497 YP_001921249.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001921250.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_001921251.1 identified by match to protein family HMM PF07690 YP_001921253.1 identified by match to protein family HMM PF02901 YP_001921254.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001921255.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001921256.1 identified by match to protein family HMM PF00196; match to protein family HMM PF08281 YP_001921257.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001921258.1 identified by match to protein family HMM PF01547 YP_001921259.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001921260.1 identified by match to protein family HMM PF05167 YP_001921261.1 ACT domain-containing protein YP_001921263.1 identified by match to protein family HMM PF00535 YP_001921264.1 identified by glimmer; putative YP_001921267.1 identified by glimmer; putative YP_001921268.1 identified by glimmer; putative YP_001921269.1 identified by match to protein family HMM PF06177 YP_001921270.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM TIGR01179 YP_001921271.1 identified by match to protein family HMM PF04607 YP_001921272.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906 YP_001921273.1 identified by match to protein family HMM PF00395; match to protein family HMM PF03413 YP_001921274.1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated YP_001921275.1 identified by match to protein family HMM PF00896; match to protein family HMM TIGR01697; match to protein family HMM TIGR01700 YP_001921276.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001921277.1 identified by match to protein family HMM PF01979 YP_001921278.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_001921279.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001921280.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_001921281.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_001921282.1 identified by match to protein family HMM PF07690 YP_001921283.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001921284.1 identified by match to protein family HMM PF00929 YP_001921285.1 identified by glimmer; putative YP_001921286.1 identified by glimmer; putative YP_001921287.1 identified by glimmer; putative YP_001921288.1 identified by glimmer; putative YP_001921289.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714 YP_001921290.1 identified by glimmer; putative YP_001921292.1 identified by match to protein family HMM PF07299 YP_001921295.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001921296.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001921297.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_001921298.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_001921299.1 identified by match to protein family HMM PF08011 YP_001921300.1 identified by glimmer; putative YP_001921302.1 identified by glimmer; putative YP_001921304.1 identified by match to protein family HMM TIGR03187; match to protein family HMM TIGR03233 YP_001921305.1 identified by match to protein family HMM TIGR03183 YP_001921306.1 identified by match to protein family HMM TIGR03185 YP_001921308.1 identified by match to protein family HMM PF00266 YP_001921309.1 identified by glimmer; putative YP_001921310.1 identified by match to protein family HMM PF03235; match to protein family HMM PF07510 YP_001921315.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_001921316.1 identified by match to protein family HMM PF00465 YP_001921317.1 identified by match to protein family HMM PF03928 YP_001921318.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_001921320.1 identified by match to protein family HMM PF08841 YP_001921321.1 identified by match to protein family HMM PF02287 YP_001921322.1 identified by match to protein family HMM PF02288 YP_001921323.1 identified by match to protein family HMM PF02286 YP_001921324.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_001921325.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580 YP_001921326.1 identified by match to protein family HMM PF01473; match to protein family HMM PF07554 YP_001921327.1 identified by match to protein family HMM PF04326 YP_001921328.1 identified by match to protein family HMM PF01909 YP_001921329.1 identified by match to protein family HMM PF08780; match to protein family HMM TIGR01987 YP_001921330.1 identified by match to protein family HMM PF00248 YP_001921331.1 identified by match to protein family HMM PF00005 YP_001921332.1 identified by match to protein family HMM PF01032 YP_001921333.1 identified by match to protein family HMM PF01032 YP_001921334.1 identified by match to protein family HMM PF01497 YP_001921336.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_001921337.1 identified by match to protein family HMM PF00128 YP_001921338.1 identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484 YP_001921339.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001921340.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001921342.1 identified by glimmer; putative YP_001921343.1 identified by glimmer; putative YP_001921345.1 identified by glimmer; putative YP_001921346.1 identified by glimmer; putative YP_001921348.1 identified by match to protein family HMM PF00583 YP_001921350.1 identified by match to protein family HMM PF00149 YP_001921351.1 identified by match to protein family HMM PF00903 YP_001921352.1 identified by match to protein family HMM PF02016 YP_001921353.1 identified by glimmer; putative YP_001921354.1 identified by match to protein family HMM PF00583 YP_001921355.1 identified by match to protein family HMM PF05014 YP_001921356.1 identified by match to protein family HMM PF00132 YP_001921357.1 identified by match to protein family HMM PF05569 YP_001921358.1 identified by match to protein family HMM PF03965 YP_001921359.1 identified by glimmer; putative YP_001921360.1 identified by match to protein family HMM PF00583 YP_001921361.1 identified by match to protein family HMM PF01381 YP_001921362.1 identified by glimmer; putative YP_001921364.1 identified by match to protein family HMM PF00583 YP_001921365.1 identified by glimmer; putative YP_001921366.1 identified by match to protein family HMM PF00583 YP_001921369.1 identified by glimmer; putative YP_001921370.1 identified by match to protein family HMM PF00015 YP_001921371.1 identified by glimmer; putative YP_001921372.1 identified by match to protein family HMM PF01022 YP_001921373.1 identified by match to protein family HMM PF07853 YP_001921374.1 identified by match to protein family HMM PF00999 YP_001921375.1 identified by match to protein family HMM PF00805 YP_001921376.1 identified by glimmer; putative YP_001921377.1 identified by match to protein family HMM PF01909 YP_001921378.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001921379.1 identified by match to protein family HMM PF00171; match to protein family HMM PF00465 YP_001921381.1 identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001921382.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_001921383.1 identified by glimmer; putative YP_001921384.1 identified by glimmer; putative YP_001921387.1 identified by match to protein family HMM PF02525 YP_001921388.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001921389.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001921392.1 identified by match to protein family HMM PF00005 YP_001921393.1 identified by match to protein family HMM PF01863 YP_001921394.1 identified by glimmer; putative YP_001921397.1 identified by match to protein family HMM PF00877 YP_001921402.1 identified by glimmer; putative YP_001921403.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001921404.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate YP_001921405.1 identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731 YP_001921406.1 identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731 YP_001921407.1 identified by match to protein family HMM PF00271 YP_001921409.1 identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093 YP_001921410.1 identified by glimmer; putative YP_001921411.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_001921412.1 identified by match to protein family HMM PF03961 YP_001921413.1 identified by glimmer; putative YP_001921414.1 identified by match to protein family HMM PF01473; match to protein family HMM PF05257; match to protein family HMM PF08239 YP_001921415.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_001921416.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001921417.1 identified by match to protein family HMM PF01171 YP_001921420.1 Regulatory factor involved in maltose metabolism YP_001921421.1 identified by match to protein family HMM PF01451 YP_001921422.1 identified by match to protein family HMM PF01022 YP_001921423.1 identified by match to protein family HMM PF00583 YP_001921425.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_001921426.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_001921427.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220 YP_001921428.1 identified by match to protein family HMM PF02811 YP_001921429.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001921430.1 identified by match to protein family HMM PF00300 YP_001921431.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512 YP_001921432.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512 YP_001921433.1 identified by match to protein family HMM PF01257 YP_001921434.1 identified by glimmer; putative YP_001921435.1 identified by match to protein family HMM PF00614 YP_001921436.1 identified by match to protein family HMM PF01594 YP_001921437.1 identified by match to protein family HMM PF00561 YP_001921438.1 identified by match to protein family HMM PF00583 YP_001921439.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03222; match to protein family HMM PF03845 YP_001921440.1 identified by match to protein family HMM PF06496 YP_001921441.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines YP_001921442.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001921443.1 identified by glimmer; putative YP_001921444.1 Heat shock-induced YP_001921445.1 identified by glimmer; putative YP_001921446.1 identified by glimmer; putative YP_001921447.1 identified by glimmer; putative YP_001921449.1 identified by glimmer; putative YP_001921450.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM PF08455 YP_001921451.1 identified by match to protein family HMM PF00226; match to protein family HMM PF07719 YP_001921452.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_001921453.1 identified by match to protein family HMM PF01183 YP_001921457.1 identified by match to protein family HMM PF00188 YP_001921458.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 YP_001921459.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_001921460.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_001921461.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600 YP_001921462.1 identified by match to protein family HMM PF05651 YP_001921467.1 identified by match to protein family HMM PF00529 YP_001921468.1 identified by match to protein family HMM PF01047 YP_001921469.1 identified by match to protein family HMM PF03883 YP_001921471.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_001921472.1 identified by match to protein family HMM PF00768 YP_001921474.1 identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874 YP_001921475.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer YP_001921476.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB YP_001921477.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_001921478.1 identified by match to protein family HMM PF00753 YP_001921479.1 identified by glimmer; putative YP_001921480.1 identified by match to protein family HMM PF02086 YP_001921482.1 identified by match to protein family HMM PF01510 YP_001921483.1 identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593 YP_001921484.1 identified by glimmer; putative YP_001921485.1 identified by glimmer; putative YP_001921486.1 identified by glimmer; putative YP_001921487.1 identified by match to protein family HMM TIGR01665 YP_001921488.1 identified by match to protein family HMM TIGR01633 YP_001921489.1 identified by match to protein family HMM PF05017; match to protein family HMM TIGR01760 YP_001921490.1 identified by glimmer; putative YP_001921491.1 identified by glimmer; putative YP_001921492.1 identified by glimmer; putative YP_001921498.1 identified by match to protein family HMM PF00574 YP_001921499.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_001921500.1 identified by match to protein family HMM PF03354 YP_001921502.1 identified by match to protein family HMM PF01844 YP_001921504.1 identified by match to protein family HMM PF00589 YP_001921506.1 identified by glimmer; putative YP_001921507.1 identified by glimmer; putative YP_001921508.1 identified by glimmer; putative YP_001921509.1 identified by glimmer; putative YP_001921510.1 identified by glimmer; putative YP_001921511.1 identified by glimmer; putative YP_001921512.1 identified by glimmer; putative YP_001921513.1 identified by glimmer; putative YP_001921515.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_001921516.1 identified by match to protein family HMM PF01656 YP_001921517.1 identified by glimmer; putative YP_001921518.1 identified by match to protein family HMM TIGR01764 YP_001921520.1 identified by glimmer; putative YP_001921521.1 identified by match to protein family HMM PF01381 YP_001921522.1 identified by match to protein family HMM PF01381 YP_001921523.1 identified by match to protein family HMM PF00753 YP_001921524.1 identified by match to protein family HMM PF01473 YP_001921526.1 identified by match to protein family HMM PF07060 YP_001921529.1 identified by match to protein family HMM PF06114 YP_001921530.1 identified by match to protein family HMM PF00589 YP_001921531.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_001921532.1 identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831 YP_001921533.1 converts 1,4-alpha-D-glucans to maltodextrin YP_001921534.1 identified by glimmer; putative YP_001921535.1 identified by glimmer; putative YP_001921536.1 identified by glimmer; putative YP_001921539.1 identified by glimmer; putative YP_001921541.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875 YP_001921542.1 identified by match to protein family HMM PF00595; match to protein family HMM PF05580; match to protein family HMM TIGR02860 YP_001921543.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_001921544.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_001921545.1 identified by match to protein family HMM PF01513 YP_001921546.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_001921547.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001921548.1 identified by match to protein family HMM PF00348 YP_001921550.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_001921551.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_001921552.1 identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951 YP_001921553.1 identified by match to protein family HMM PF03780 YP_001921555.1 identified by match to protein family HMM TIGR02830 YP_001921556.1 identified by match to protein family HMM PF09581; match to protein family HMM TIGR02896 YP_001921557.1 identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829 YP_001921558.1 identified by match to protein family HMM PF09555; match to protein family HMM TIGR02849 YP_001921559.1 identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848 YP_001921560.1 necessary for complete engulfment of forespore YP_001921561.1 identified by match to protein family HMM TIGR02858 YP_001921563.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001921565.1 identified by glimmer; putative YP_001921567.1 identified by glimmer; putative YP_001921570.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001921571.1 identified by match to protein family HMM PF00482 YP_001921572.1 identified by match to protein family HMM PF00437 YP_001921574.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001921575.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833 YP_001921576.1 identified by match to protein family HMM PF01170 YP_001921577.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_001921578.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_001921579.1 identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544 YP_001921580.1 identified by match to protein family HMM PF01479 YP_001921581.1 identified by match to protein family HMM PF02325 YP_001921582.1 identified by match to protein family HMM PF04472 YP_001921583.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_001921584.1 identified by match to protein family HMM PF05949 YP_001921585.1 identified by match to protein family HMM PF06947 YP_001921586.1 identified by match to protein family HMM PF05949 YP_001921587.1 identified by match to protein family HMM PF08478 YP_001921588.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615 YP_001921589.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001921590.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_001921591.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_001921592.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214 YP_001921594.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_001921595.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_001921596.1 identified by glimmer; putative YP_001921597.1 identified by match to protein family HMM PF03591 YP_001921598.1 identified by match to protein family HMM PF05437 YP_001921599.1 identified by glimmer; putative YP_001921600.1 identified by match to protein family HMM PF03741 YP_001921601.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001921602.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884 YP_001921603.1 identified by match to protein family HMM PF04961 YP_001921604.1 identified by match to protein family HMM PF04932 YP_001921605.1 identified by match to protein family HMM PF00534 YP_001921607.1 identified by match to protein family HMM PF01554; match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_001921608.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_001921609.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001921610.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_001921611.1 identified by match to protein family HMM PF04463 YP_001921612.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange YP_001921613.1 identified by match to protein family HMM PF01136 YP_001921614.1 identified by match to protein family HMM PF05164 YP_001921615.1 identified by glimmer; putative YP_001921616.1 identified by match to protein family HMM PF07690 YP_001921617.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001921618.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00254 YP_001921619.1 identified by match to protein family HMM PF00753 YP_001921620.1 identified by match to protein family HMM PF00924 YP_001921621.1 identified by match to protein family HMM PF02016 YP_001921622.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001921623.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001921624.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001921625.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_001921626.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254 YP_001921627.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_001921628.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001921629.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_001921630.1 identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 YP_001921631.1 identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834 YP_001921633.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_001921634.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001921636.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_001921637.1 identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 YP_001921638.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_001921639.1 identified by match to protein family HMM PF00496 YP_001921640.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_001921641.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_001921642.1 identified by match to protein family HMM PF00528 YP_001921643.1 identified by match to protein family HMM PF00528 YP_001921644.1 identified by match to protein family HMM PF00496 YP_001921645.1 identified by match to protein family HMM PF00155 YP_001921646.1 identified by match to protein family HMM PF00132; match to protein family HMM PF08503; match to protein family HMM TIGR03532 YP_001921647.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_001921648.1 identified by match to protein family HMM PF01522 YP_001921652.1 identified by match to protein family HMM PF08797 YP_001921653.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_001921654.1 identified by match to protein family HMM PF01906 YP_001921655.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001921656.1 identified by match to protein family HMM PF02016 YP_001921657.1 identified by match to protein family HMM PF00535 YP_001921658.1 identified by match to protein family HMM PF04138 YP_001921659.1 identified by match to protein family HMM PF00465 YP_001921660.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001921661.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07494; match to protein family HMM PF07495 YP_001921662.1 identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629 YP_001921663.1 identified by match to protein family HMM TIGR01451 YP_001921665.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_001921666.1 identified by match to protein family HMM TIGR01451 YP_001921667.1 identified by glimmer; putative YP_001921668.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001921669.1 identified by glimmer; putative YP_001921673.1 identified by glimmer; putative YP_001921674.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001921675.1 identified by match to protein family HMM PF00515 YP_001921676.1 identified by match to protein family HMM PF01841 YP_001921677.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_001921678.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_001921679.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001921680.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01563 YP_001921681.1 identified by match to protein family HMM PF06874 YP_001921682.1 identified by match to protein family HMM PF01134; match to protein family HMM PF07992 YP_001921683.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_001921684.1 identified by match to protein family HMM PF00583 YP_001921685.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001921686.1 identified by match to protein family HMM PF00005 YP_001921687.1 identified by match to protein family HMM PF00528 YP_001921689.1 identified by match to protein family HMM PF03885 YP_001921691.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_001921692.1 identified by match to protein family HMM PF03323 YP_001921694.1 identified by match to protein family HMM PF00132 YP_001921696.1 identified by glimmer; putative YP_001921698.1 identified by match to protein family HMM PF01037 YP_001921699.1 identified by match to protein family HMM PF04070 YP_001921700.1 identified by match to protein family HMM PF06541 YP_001921702.1 identified by match to protein family HMM PF00753 YP_001921703.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001921705.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_001921706.1 identified by match to protein family HMM PF04023 YP_001921707.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650 YP_001921708.1 identified by match to protein family HMM PF01594 YP_001921709.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001921710.1 identified by match to protein family HMM PF02541 YP_001921711.1 identified by match to protein family HMM PF02163 YP_001921714.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121 YP_001921715.1 catalyzes the formation of asparagine from aspartate and ammonia YP_001921716.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771 YP_001921717.1 identified by match to protein family HMM PF00929 YP_001921718.1 identified by match to protein family HMM PF00301 YP_001921719.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493 YP_001921720.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_001921722.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001921723.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_001921724.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+) YP_001921725.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_001921726.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00857 YP_001921727.1 involved in the allosteric regulation of aspartate carbamoyltransferase YP_001921728.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001921729.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_001921731.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001921732.1 identified by match to protein family HMM PF08245; match to protein family HMM PF08353 YP_001921733.1 identified by match to protein family HMM PF07685 YP_001921734.1 identified by match to protein family HMM PF01522 YP_001921735.1 identified by match to protein family HMM PF00768 YP_001921736.1 identified by match to protein family HMM PF01613 YP_001921737.1 identified by match to protein family HMM PF03960 YP_001921739.1 identified by match to protein family HMM PF09335 YP_001921740.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001921741.1 identified by match to protein family HMM PF01473 YP_001921742.1 identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533 YP_001921743.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001921744.1 identified by match to protein family HMM PF01473 YP_001921745.1 identified by match to protein family HMM PF00132 YP_001921746.1 identified by match to protein family HMM PF00375 YP_001921749.1 identified by glimmer; putative YP_001921753.1 identified by glimmer; putative YP_001921754.1 identified by glimmer; putative YP_001921755.1 identified by glimmer; putative YP_001921756.1 identified by glimmer; putative YP_001921757.1 identified by match to protein family HMM PF00583 YP_001921758.1 identified by match to protein family HMM PF02275 YP_001921759.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_001921764.1 identified by match to protein family HMM PF00005 YP_001921765.1 identified by match to protein family HMM PF00528 YP_001921766.1 identified by match to protein family HMM PF03788 YP_001921767.1 identified by match to protein family HMM PF04172 YP_001921768.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751 YP_001921769.1 identified by match to protein family HMM PF03073 YP_001921770.1 identified by glimmer; putative YP_001921771.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001921772.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001921773.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_001921774.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_001921775.1 identified by match to protein family HMM PF01270 YP_001921776.1 identified by match to protein family HMM PF01464 YP_001921777.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_001921778.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_001921779.1 identified by match to protein family HMM PF02073 YP_001921780.1 identified by glimmer; putative YP_001921781.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_001921782.1 Converts isocitrate to alpha ketoglutarate YP_001921783.1 identified by match to protein family HMM PF03601 YP_001921784.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001921785.1 identified by match to protein family HMM PF01098 YP_001921786.1 identified by glimmer; putative YP_001921787.1 identified by match to protein family HMM PF00583 YP_001921788.1 identified by glimmer; putative YP_001921789.1 identified by glimmer; putative YP_001921790.1 identified by glimmer; putative YP_001921791.1 identified by match to protein family HMM PF06953 YP_001921792.1 identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345 YP_001921793.1 identified by glimmer; putative YP_001921794.1 identified by glimmer; putative YP_001921796.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001921797.1 identified by match to protein family HMM PF01547 YP_001921798.1 identified by match to protein family HMM PF00528 YP_001921799.1 identified by match to protein family HMM PF00528 YP_001921800.1 identified by match to protein family HMM PF07885 YP_001921802.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001921803.1 identified by match to protein family HMM PF01473; match to protein family HMM PF01520 YP_001921804.1 identified by match to protein family HMM PF07238 YP_001921805.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_001921806.1 identified by glimmer; putative YP_001921807.1 identified by match to protein family HMM PF02588 YP_001921808.1 identified by match to protein family HMM PF01047 YP_001921810.1 identified by glimmer; putative YP_001921811.1 identified by match to protein family HMM PF04229 YP_001921812.1 identified by match to protein family HMM PF02698 YP_001921814.1 identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_001921816.1 identified by glimmer; putative YP_001921818.1 identified by glimmer; putative YP_001921820.1 identified by glimmer; putative YP_001921821.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001921822.1 identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF03807 YP_001921824.1 identified by match to protein family HMM PF08241 YP_001921825.1 identified by match to protein family HMM PF08241 YP_001921826.1 identified by match to protein family HMM PF04993 YP_001921827.1 identified by match to protein family HMM PF00903 YP_001921828.1 identified by match to protein family HMM PF08020 YP_001921829.1 identified by match to protein family HMM PF00293 YP_001921830.1 identified by match to protein family HMM PF04994 YP_001921831.1 identified by match to protein family HMM PF00023 YP_001921834.1 identified by glimmer; putative YP_001921835.1 identified by match to protein family HMM PF08887; match to protein family HMM PF08906 YP_001921836.1 identified by match to protein family HMM TIGR01784 YP_001921837.1 identified by glimmer; putative YP_001921839.1 identified by match to protein family HMM PF00583 YP_001921840.1 identified by match to protein family HMM PF09335 YP_001921841.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001921842.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001921846.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001921847.1 identified by glimmer; putative YP_001921848.1 identified by match to protein family HMM PF00724 YP_001921849.1 identified by match to protein family HMM PF01638 YP_001921850.1 identified by match to protein family HMM PF00302 YP_001921852.1 identified by glimmer; putative YP_001921857.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_001921858.1 identified by glimmer; putative YP_001921859.1 identified by glimmer; putative YP_001921860.1 identified by glimmer; putative YP_001921861.1 identified by glimmer; putative YP_001921862.1 identified by glimmer; putative YP_001921866.1 identified by glimmer; putative YP_001921868.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_001921869.1 identified by match to protein family HMM PF09519 YP_001921870.1 identified by match to protein family HMM PF09234 YP_001921871.1 identified by glimmer; putative YP_001921872.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001921873.1 identified by match to protein family HMM PF06304 YP_001921874.1 identified by match to protein family HMM PF06304 YP_001921875.1 identified by match to protein family HMM PF03551 YP_001921878.1 identified by match to protein family HMM PF07007 YP_001921879.1 identified by glimmer; putative YP_001921882.1 identified by match to protein family HMM PF00753 YP_001921883.1 identified by match to protein family HMM PF00144 YP_001921884.1 identified by match to protein family HMM PF00583 YP_001921885.1 identified by match to protein family HMM PF02274 YP_001921886.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01446; match to protein family HMM TIGR01714 YP_001921887.1 identified by match to protein family HMM PF02498; match to protein family HMM PF03374 YP_001921889.1 identified by match to protein family HMM PF01381 YP_001921890.1 identified by match to protein family HMM PF06114 YP_001921891.1 identified by match to protein family HMM PF02915; match to protein family HMM PF05067 YP_001921892.1 identified by glimmer; putative YP_001921893.1 identified by glimmer; putative YP_001921894.1 identified by match to protein family HMM PF01473 YP_001921896.1 identified by glimmer; putative YP_001921898.1 identified by match to protein family HMM PF04471 YP_001921900.1 identified by glimmer; putative YP_001921906.1 identified by glimmer; putative YP_001921909.1 identified by glimmer; putative YP_001921913.1 identified by glimmer; putative YP_001921914.1 identified by match to protein family HMM PF08903 YP_001921916.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF02683; match to protein family HMM PF08534 YP_001921917.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_001921918.1 identified by match to protein family HMM PF01289 YP_001921919.1 identified by match to protein family HMM PF00037 YP_001921920.1 identified by glimmer; putative YP_001921921.1 identified by glimmer; putative YP_001921923.1 identified by match to protein family HMM PF00023 YP_001921924.1 identified by glimmer; putative YP_001921926.1 identified by glimmer; putative YP_001921927.1 identified by glimmer; putative YP_001921928.1 identified by match to protein family HMM PF09388 YP_001921929.1 identified by glimmer; putative YP_001921930.1 identified by match to protein family HMM PF00583 YP_001921931.1 identified by glimmer; putative YP_001921932.1 identified by glimmer; putative YP_001921933.1 identified by match to protein family HMM PF00892 YP_001921934.1 identified by glimmer; putative YP_001921935.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_001921936.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_001921939.1 identified by match to protein family HMM PF02687 YP_001921940.1 identified by match to protein family HMM PF00005 YP_001921941.1 identified by match to protein family HMM PF00529 YP_001921943.1 identified by match to protein family HMM PF02632 YP_001921944.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_001921945.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_001921947.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001921948.1 identified by glimmer; putative YP_001921949.1 identified by match to protein family HMM PF00224 YP_001921951.1 identified by match to protein family HMM PF02811 YP_001921953.1 catalyzes the removal of amino acids from the N termini of peptides YP_001921954.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_001921955.1 identified by match to protein family HMM PF05979 YP_001921956.1 identified by glimmer; putative YP_001921958.1 identified by match to protein family HMM PF06949 YP_001921959.1 identified by match to protein family HMM PF00580 YP_001921961.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607 YP_001921962.1 identified by match to protein family HMM PF02965 YP_001921963.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_001921964.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_001921965.1 identified by match to protein family HMM PF00953 YP_001921966.1 identified by match to protein family HMM PF00149; match to protein family HMM PF01476; match to protein family HMM PF02872 YP_001921967.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex YP_001921968.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_001921969.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex YP_001921970.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex YP_001921971.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex YP_001921972.1 identified by match to protein family HMM PF01991 YP_001921973.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits YP_001921974.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel. YP_001921976.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055 YP_001921979.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR02900 YP_001921980.1 identified by match to protein family HMM PF01943; match to protein family HMM PF03023 YP_001921981.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_001921982.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001921984.1 identified by glimmer; putative YP_001921985.1 identified by match to protein family HMM PF00580 YP_001921986.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_001921990.1 identified by match to protein family HMM PF01475 YP_001921993.1 identified by glimmer; putative YP_001921994.1 identified by glimmer; putative YP_001921995.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001921996.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07726; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_001921997.1 binds and unfolds substrates as part of the ClpXP protease YP_001921998.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_001921999.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_001922001.1 identified by glimmer; putative YP_001922002.1 identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856 YP_001922003.1 identified by match to protein family HMM PF01503; match to protein family HMM TIGR03188; match to protein family HMM TIGR03456 YP_001922004.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_001922005.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001922006.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_001922007.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001922008.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001922009.1 identified by match to protein family HMM PF00155 YP_001922010.1 identified by match to protein family HMM PF00815; match to protein family HMM TIGR00069 YP_001922011.1 identified by match to protein family HMM PF01634; match to protein family HMM TIGR00070 YP_001922012.1 identified by match to protein family HMM PF00587; match to protein family HMM TIGR00443 YP_001922013.1 identified by match to protein family HMM PF00583 YP_001922014.1 Required for the synthesis of the thiazole moiety YP_001922015.1 identified by match to protein family HMM PF00266 YP_001922016.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001922017.1 identified by match to protein family HMM PF01842 YP_001922018.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_001922019.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001922022.1 identified by match to protein family HMM PF07885 YP_001922024.1 identified by match to protein family HMM PF00561 YP_001922025.1 identified by match to protein family HMM PF06180 YP_001922026.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_001922027.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001922028.1 identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469 YP_001922029.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001922030.1 catalyzes the formation of siroheme from precorrin-2 YP_001922031.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_001922032.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460 YP_001922033.1 identified by match to protein family HMM PF01255 YP_001922034.1 identified by match to protein family HMM PF00209 YP_001922035.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_001922037.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001922038.1 identified by match to protein family HMM TIGR02840 YP_001922039.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_001922040.1 identified by match to protein family HMM PF01902; match to protein family HMM TIGR00290 YP_001922041.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase YP_001922042.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_001922043.1 identified by match to protein family HMM PF00300 YP_001922045.1 identified by match to protein family HMM PF02654 YP_001922047.1 identified by match to protein family HMM PF02572 YP_001922048.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069 YP_001922049.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_001922050.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02080 YP_001922051.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_001922053.1 identified by glimmer; putative YP_001922054.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_001922055.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_001922056.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466 YP_001922057.1 identified by match to protein family HMM PF01890 YP_001922058.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_001922059.1 catalyzes the formation of precorrin-3A from precorrin-2 YP_001922060.1 identified by match to protein family HMM TIGR02469 YP_001922061.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467 YP_001922062.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_001922063.1 catalyzes the interconversion of precorrin-8X and cobyrinic acid YP_001922064.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_001922065.1 identified by match to protein family HMM PF06180 YP_001922067.1 identified by match to protein family HMM PF00209 YP_001922069.1 identified by glimmer; putative YP_001922070.1 identified by match to protein family HMM PF00294 YP_001922071.1 identified by match to protein family HMM PF00903 YP_001922072.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_001922073.1 identified by match to protein family HMM PF02378 YP_001922074.1 identified by match to protein family HMM PF00480 YP_001922075.1 identified by match to protein family HMM PF00258 YP_001922076.1 identified by match to protein family HMM PF04509 YP_001922077.1 identified by match to protein family HMM PF00072 YP_001922078.1 identified by glimmer; putative YP_001922079.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_001922080.1 identified by match to protein family HMM PF00959; match to protein family HMM PF01473 YP_001922081.1 identified by match to protein family HMM PF00753 YP_001922082.1 identified by match to protein family HMM PF00015 YP_001922083.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001922084.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001922085.1 identified by match to protein family HMM PF01047 YP_001922086.1 identified by match to protein family HMM PF00465; match to protein family HMM PF00702; match to protein family HMM PF01761; match to protein family HMM TIGR01460 YP_001922087.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001922088.1 identified by match to protein family HMM PF02535 YP_001922090.1 identified by match to protein family HMM PF06207 YP_001922091.1 identified by glimmer; putative YP_001922092.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_001922093.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_001922095.1 identified by match to protein family HMM PF04018 YP_001922097.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001922098.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_001922099.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_001922100.1 identified by match to protein family HMM PF02653 YP_001922101.1 identified by match to protein family HMM PF02653 YP_001922102.1 identified by match to protein family HMM PF00005 YP_001922103.1 identified by match to protein family HMM PF02608 YP_001922104.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001922105.1 identified by match to protein family HMM PF00155 YP_001922106.1 identified by match to protein family HMM PF01037 YP_001922107.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104 YP_001922108.1 identified by glimmer; putative YP_001922109.1 identified by match to protein family HMM PF00209 YP_001922110.1 identified by glimmer; putative YP_001922111.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711 YP_001922112.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_001922113.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001922114.1 identified by match to protein family HMM PF04055 YP_001922116.1 molecular chaperone YP_001922117.1 identified by match to protein family HMM PF02463 YP_001922118.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619 YP_001922119.1 identified by match to protein family HMM PF00583 YP_001922120.1 identified by match to protein family HMM PF02698 YP_001922121.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001922122.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_001922123.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001922125.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001922126.1 identified by match to protein family HMM TIGR01921 YP_001922127.1 identified by glimmer; putative YP_001922128.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08279 YP_001922129.1 identified by match to protein family HMM PF00465 YP_001922130.1 identified by match to protein family HMM PF00697 YP_001922131.1 identified by match to protein family HMM PF00294 YP_001922132.1 identified by glimmer; putative YP_001922133.1 identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001922134.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_001922135.1 identified by match to protein family HMM PF00480 YP_001922136.1 identified by glimmer; putative YP_001922137.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001922138.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001922139.1 identified by match to protein family HMM PF04231 YP_001922140.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001922142.1 identified by match to protein family HMM PF00376; match to protein family HMM PF09278 YP_001922143.1 identified by glimmer; putative YP_001922146.1 identified by match to protein family HMM PF01156 YP_001922147.1 identified by match to protein family HMM PF00892 YP_001922148.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 YP_001922149.1 catalyzes the formation of oxaloacetate from L-aspartate YP_001922150.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_001922151.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_001922152.1 identified by match to protein family HMM PF07561 YP_001922153.1 identified by glimmer; putative YP_001922154.1 identified by glimmer; putative YP_001922155.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437 YP_001922156.1 identified by match to protein family HMM PF04023 YP_001922157.1 identified by match to protein family HMM PF04023 YP_001922158.1 CoADR; specific for coenzyme A disulfide; requires NADH; involved in protecting cells against reactive oxygen species by recycling coenzyme A disulfide which can reduce hydrogen peroxide YP_001922159.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_001922160.1 identified by match to protein family HMM PF04055 YP_001922162.1 identified by match to protein family HMM PF01431; match to protein family HMM PF05649 YP_001922163.1 identified by match to protein family HMM PF00015 YP_001922166.1 identified by match to protein family HMM PF05067 YP_001922167.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912 YP_001922168.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide YP_001922169.1 identified by match to protein family HMM TIGR02910 YP_001922170.1 identified by match to protein family HMM PF01226 YP_001922171.1 identified by match to protein family HMM PF00325 YP_001922172.1 identified by glimmer; putative YP_001922173.1 identified by match to protein family HMM TIGR01764 YP_001922174.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_001922175.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141 YP_001922176.1 identified by match to protein family HMM PF00005 YP_001922177.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_001922178.1 identified by match to protein family HMM PF00175 YP_001922179.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001922180.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_001922181.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001922182.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_001922183.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001922185.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_001922187.1 identified by match to protein family HMM PF01966 YP_001922188.1 identified by match to protein family HMM PF00015 YP_001922189.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001922190.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001922191.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_001922192.1 identified by match to protein family HMM PF04198 YP_001922193.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_001922194.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001922195.1 identified by match to protein family HMM PF00588 YP_001922196.1 identified by match to protein family HMM PF04294; match to protein family HMM PF07501 YP_001922197.1 identified by match to protein family HMM PF01183 YP_001922198.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001922199.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001922200.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001922201.1 identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_001922202.1 identified by match to protein family HMM PF01553 YP_001922203.1 identified by match to protein family HMM PF08331 YP_001922204.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_001922205.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_001922206.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03448 YP_001922207.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08497 YP_001922209.1 similar to YegS from E. coli YP_001922210.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_001922212.1 identified by glimmer; putative YP_001922213.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_001922214.1 identified by match to protein family HMM PF04293 YP_001922215.1 identified by match to protein family HMM PF04285; match to protein family HMM TIGR02877 YP_001922216.1 identified by match to protein family HMM PF06798; match to protein family HMM PF08298 YP_001922217.1 identified by glimmer; putative YP_001922218.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_001922219.1 identified by glimmer; putative YP_001922220.1 identified by glimmer; putative YP_001922221.1 identified by glimmer; putative YP_001922223.1 identified by match to protein family HMM PF00005 YP_001922224.1 identified by match to protein family HMM PF02518 YP_001922225.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001922226.1 identified by glimmer; putative YP_001922227.1 identified by glimmer; putative YP_001922228.1 identified by match to protein family HMM PF01047 YP_001922230.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_001922231.1 identified by match to protein family HMM PF01734 YP_001922232.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_001922233.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_001922234.1 identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097 YP_001922235.1 identified by glimmer; putative YP_001922236.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_001922237.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_001922238.1 identified by match to protein family HMM PF00485 YP_001922239.1 identified by match to protein family HMM PF04239 YP_001922241.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859 YP_001922242.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_001922243.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001922244.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_001922245.1 identified by match to protein family HMM PF01960; match to protein family HMM TIGR00120 YP_001922246.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_001922247.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707 YP_001922248.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658 YP_001922249.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001922251.1 identified by match to protein family HMM PF01928 YP_001922252.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_001922253.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_001922254.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway YP_001922255.1 identified by match to protein family HMM PF03610 YP_001922256.1 identified by match to protein family HMM PF01380 YP_001922257.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM PF08220 YP_001922258.1 identified by match to protein family HMM PF03613 YP_001922259.1 identified by match to protein family HMM PF03609 YP_001922260.1 identified by match to protein family HMM PF03830; match to protein family HMM TIGR00854 YP_001922261.1 identified by glimmer; putative YP_001922262.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_001922263.1 identified by match to protein family HMM PF02153 YP_001922264.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_001922265.1 identified by match to protein family HMM PF01202 YP_001922266.1 identified by match to protein family HMM PF01488; match to protein family HMM PF08501; match to protein family HMM TIGR00507 YP_001922267.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01805 YP_001922268.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001922269.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001922270.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_001922271.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_001922272.1 identified by match to protein family HMM PF00614 YP_001922273.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121 YP_001922274.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001922275.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001922278.1 identified by match to protein family HMM TIGR01911 YP_001922281.1 identified by match to protein family HMM PF07728 YP_001922283.1 identified by match to protein family HMM PF04607 YP_001922285.1 identified by match to protein family HMM PF00015 YP_001922286.1 identified by match to protein family HMM PF01471 YP_001922287.1 identified by match to protein family HMM PF00149 YP_001922290.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001922291.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_001922292.1 identified by match to protein family HMM PF03323 YP_001922293.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001922295.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001922296.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001922297.1 identified by glimmer; putative YP_001922298.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_001922299.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_001922300.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_001922301.1 identified by match to protein family HMM PF02397 YP_001922302.1 identified by match to protein family HMM PF00534 YP_001922303.1 identified by match to protein family HMM PF00534 YP_001922304.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_001922306.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001922307.1 identified by match to protein family HMM PF00535 YP_001922308.1 identified by match to protein family HMM PF04991 YP_001922309.1 identified by match to protein family HMM PF00535 YP_001922310.1 identified by match to protein family HMM PF00528 YP_001922311.1 identified by match to protein family HMM PF00528 YP_001922312.1 identified by match to protein family HMM PF01547 YP_001922313.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001922314.1 identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_001922315.1 identified by match to protein family HMM PF00892 YP_001922316.1 identified by match to protein family HMM PF01473 YP_001922317.1 identified by match to protein family HMM PF01943; match to protein family HMM PF03023 YP_001922319.1 identified by match to protein family HMM PF01047; match to protein family HMM PF01633; match to protein family HMM PF01636 YP_001922320.1 identified by glimmer; putative YP_001922322.1 identified by match to protein family HMM PF01473 YP_001922323.1 identified by match to protein family HMM PF01473; match to protein family HMM PF01520 YP_001922324.1 identified by match to protein family HMM PF01473; match to protein family HMM PF01520 YP_001922326.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001922327.1 identified by match to protein family HMM PF08543 YP_001922328.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_001922329.1 identified by match to protein family HMM PF07992 YP_001922330.1 identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856 YP_001922331.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001922332.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001922333.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_001922334.1 identified by match to protein family HMM PF00175 YP_001922335.1 identified by match to protein family HMM PF00465 YP_001922336.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954 YP_001922337.1 identified by match to protein family HMM PF06725 YP_001922339.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503 YP_001922340.1 identified by match to protein family HMM PF01473; match to protein family HMM PF09479; match to protein family HMM TIGR02543 YP_001922342.1 identified by match to protein family HMM PF00990; match to protein family HMM PF07719; match to protein family HMM TIGR00254 YP_001922343.1 identified by match to protein family HMM PF01473 YP_001922344.1 identified by match to protein family HMM PF01473 YP_001922345.1 identified by match to protein family HMM PF01473 YP_001922346.1 identified by match to protein family HMM PF01473 YP_001922347.1 identified by match to protein family HMM PF01473 YP_001922348.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001922349.1 identified by match to protein family HMM PF01473 YP_001922350.1 identified by match to protein family HMM PF00196 YP_001922351.1 identified by match to protein family HMM PF01473 YP_001922352.1 identified by match to protein family HMM PF01473 YP_001922353.1 identified by match to protein family HMM PF01473 YP_001922354.1 identified by match to protein family HMM PF01473 YP_001922355.1 identified by match to protein family HMM PF01473 YP_001922357.1 identified by match to protein family HMM PF01431; match to protein family HMM PF05649 YP_001922360.1 identified by glimmer; putative YP_001922361.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714 YP_001922362.1 identified by match to protein family HMM PF00535 YP_001922365.1 identified by match to protein family HMM PF00501 YP_001922366.1 identified by glimmer; putative YP_001922367.1 identified by match to protein family HMM PF03062 YP_001922369.1 identified by glimmer; putative YP_001922370.1 identified by match to protein family HMM PF00535 YP_001922371.1 identified by match to protein family HMM PF04464 YP_001922372.1 identified by match to protein family HMM PF08240 YP_001922373.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_001922374.1 identified by match to protein family HMM PF04464 YP_001922375.1 identified by match to protein family HMM PF00005 YP_001922376.1 identified by match to protein family HMM PF01061 YP_001922377.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_001922378.1 identified by match to protein family HMM PF00535 YP_001922379.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_001922380.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_001922381.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_001922382.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03023; match to protein family HMM TIGR03025 YP_001922384.1 identified by match to protein family HMM PF04932 YP_001922385.1 identified by match to protein family HMM PF01934 YP_001922386.1 identified by match to protein family HMM PF01909 YP_001922387.1 identified by match to protein family HMM PF01473 YP_001922388.1 identified by match to protein family HMM PF01473 YP_001922390.1 identified by match to protein family HMM PF00753; match to protein family HMM PF01473 YP_001922391.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate YP_001922392.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source YP_001922394.1 identified by match to protein family HMM PF02302 YP_001922395.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_001922396.1 identified by match to protein family HMM PF00359 YP_001922398.1 identified by match to protein family HMM PF00455; match to protein family HMM PF01022; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001922399.1 catalyzes the removal of amino acids from the N termini of peptides YP_001922400.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001922401.1 identified by glimmer; putative YP_001922402.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_001922403.1 identified by glimmer; putative YP_001922404.1 identified by glimmer; putative YP_001922405.1 identified by glimmer; putative YP_001922406.1 identified by glimmer; putative YP_001922407.1 identified by match to protein family HMM PF00015 YP_001922408.1 identified by match to protein family HMM PF00005 YP_001922409.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001922410.1 identified by match to protein family HMM PF00497 YP_001922412.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_001922414.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_001922415.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_001922416.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_001922417.1 identified by glimmer; putative YP_001922419.1 identified by glimmer; putative YP_001922420.1 identified by match to protein family HMM PF01510 YP_001922421.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001922422.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001922423.1 identified by match to protein family HMM PF00092 YP_001922424.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001922426.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001922428.1 identified by match to protein family HMM PF05137 YP_001922429.1 identified by match to protein family HMM TIGR01175 YP_001922430.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001922431.1 identified by match to protein family HMM PF00482 YP_001922432.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157 YP_001922433.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_001922435.1 identified by glimmer; putative YP_001922436.1 identified by match to protein family HMM PF00015; match to protein family HMM TIGR01098 YP_001922437.1 identified by match to protein family HMM PF00403 YP_001922438.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_001922439.1 identified by match to protein family HMM PF02583 YP_001922440.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001922441.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_001922442.1 identified by match to protein family HMM PF00795 YP_001922443.1 identified by match to protein family HMM PF05031 YP_001922444.1 identified by glimmer; putative YP_001922445.1 identified by match to protein family HMM PF04304 YP_001922447.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001922448.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001922453.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001922457.1 identified by match to protein family HMM PF00941 YP_001922458.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_001922459.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_001922460.1 identified by match to protein family HMM PF00126 YP_001922461.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_001922463.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_001922464.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_001922465.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_001922466.1 identified by match to protein family HMM PF07876 YP_001922467.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_001922468.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_001922469.1 identified by match to protein family HMM PF03668 YP_001922470.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_001922471.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001922472.1 identified by match to protein family HMM PF00905 YP_001922473.1 identified by match to protein family HMM PF01098 YP_001922474.1 identified by match to protein family HMM PF00498 YP_001922475.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_001922476.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001922478.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_001922479.1 identified by match to protein family HMM PF02687 YP_001922480.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673 YP_001922481.1 identified by match to protein family HMM PF02588 YP_001922483.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001922484.1 identified by match to protein family HMM PF00456 YP_001922485.1 identified by match to protein family HMM PF02452 YP_001922488.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_001922489.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_001922491.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_001922492.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_001922493.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03446; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_001922494.1 identified by match to protein family HMM PF00132 YP_001922495.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_001922496.1 identified by match to protein family HMM PF08876 YP_001922497.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_001922498.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_001922499.1 identified by match to protein family HMM PF05175 YP_001922500.1 identified by match to protein family HMM PF00877 YP_001922501.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_001922502.1 identified by match to protein family HMM PF00639 YP_001922503.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_001922506.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_001922507.1 identified by match to protein family HMM PF06445 YP_001922508.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001922509.1 identified by match to protein family HMM PF05685 YP_001922510.1 identified by match to protein family HMM PF00583 YP_001922511.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_001922512.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_001922513.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_001922514.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_001922515.1 identified by match to protein family HMM PF01047 YP_001922518.1 identified by match to protein family HMM PF02517 YP_001922519.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_001922520.1 identified by match to protein family HMM PF00300 YP_001922521.1 identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744 YP_001922523.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001922525.1 identified by match to protein family HMM PF00884 YP_001922526.1 identified by match to protein family HMM PF00884 YP_001922527.1 identified by match to protein family HMM PF02667; match to protein family HMM PF03606; match to protein family HMM PF03806 YP_001922528.1 identified by match to protein family HMM PF04892 YP_001922531.1 identified by match to protein family HMM TIGR02092 YP_001922532.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_001922533.1 identified by match to protein family HMM PF00128 YP_001922534.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_001922535.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_001922536.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_001922537.1 identified by glimmer; putative YP_001922538.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_001922539.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_001922540.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001922541.1 identified by match to protein family HMM PF00583 YP_001922543.1 identified by glimmer; putative YP_001922544.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001922545.1 identified by match to protein family HMM PF02599 YP_001922546.1 identified by match to protein family HMM PF05976 YP_001922547.1 identified by match to protein family HMM PF00899 YP_001922548.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_001922549.1 identified by match to protein family HMM PF01473 YP_001922550.1 identified by match to protein family HMM PF07907 YP_001922551.1 identified by match to protein family HMM PF01336 YP_001922552.1 identified by match to protein family HMM PF01473 YP_001922553.1 identified by glimmer; putative YP_001922554.1 identified by glimmer; putative YP_001922555.1 identified by match to protein family HMM PF04892 YP_001922556.1 identified by match to protein family HMM PF01473 YP_001922557.1 identified by match to protein family HMM PF08011 YP_001922558.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714 YP_001922559.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_001922560.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_001922561.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_001922562.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_001922563.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_001922564.1 identified by match to protein family HMM PF00106 YP_001922565.1 identified by match to protein family HMM PF00535 YP_001922568.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943 YP_001922569.1 identified by match to protein family HMM PF04488 YP_001922570.1 identified by match to protein family HMM PF00535 YP_001922571.1 identified by match to protein family HMM PF00535 YP_001922572.1 identified by match to protein family HMM PF00132 YP_001922573.1 identified by match to protein family HMM PF00534 YP_001922574.1 identified by match to protein family HMM PF00483 YP_001922575.1 identified by match to protein family HMM PF02397 YP_001922576.1 identified by match to protein family HMM PF02811 YP_001922577.1 identified by match to protein family HMM TIGR01007 YP_001922578.1 identified by match to protein family HMM PF02706 YP_001922579.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_001922580.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_001922581.1 identified by match to protein family HMM PF06245 YP_001922582.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001922583.1 identified by match to protein family HMM PF00266 YP_001922586.1 identified by match to protein family HMM PF00005 YP_001922587.1 identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862 YP_001922589.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001922590.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_001922591.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_001922592.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_001922593.1 identified by match to protein family HMM PF00186 YP_001922595.1 identified by match to protein family HMM PF01569 YP_001922596.1 identified by match to protein family HMM PF00383 YP_001922597.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_001922598.1 identified by match to protein family HMM PF00294 YP_001922599.1 identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322 YP_001922600.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001922601.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR01996 YP_001922602.1 identified by glimmer; putative YP_001922603.1 identified by glimmer; putative YP_001922604.1 identified by glimmer; putative YP_001922605.1 identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262 YP_001922606.1 identified by match to protein family HMM PF00465 YP_001922607.1 identified by match to protein family HMM PF03437; match to protein family HMM TIGR00259 YP_001922608.1 identified by glimmer; putative YP_001922609.1 identified by match to protein family HMM PF01048 YP_001922610.1 identified by match to protein family HMM PF00294 YP_001922611.1 identified by match to protein family HMM PF00857 YP_001922612.1 identified by match to protein family HMM PF02653 YP_001922613.1 identified by match to protein family HMM PF02653 YP_001922614.1 identified by match to protein family HMM PF00005 YP_001922615.1 identified by match to protein family HMM PF02608 YP_001922616.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001922617.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001922618.1 identified by glimmer; putative YP_001922619.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001922620.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_001922621.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_001922622.1 identified by glimmer; putative YP_001922623.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001922624.1 identified by match to protein family HMM PF01636 YP_001922625.1 identified by match to protein family HMM PF07561 YP_001922627.1 identified by match to protein family HMM PF01497 YP_001922628.1 identified by match to protein family HMM PF00005 YP_001922629.1 identified by match to protein family HMM PF01032 YP_001922630.1 identified by match to protein family HMM PF01032 YP_001922631.1 identified by match to protein family HMM PF00165 YP_001922632.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815 YP_001922633.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001922634.1 identified by glimmer; putative YP_001922636.1 identified by match to protein family HMM PF01925 YP_001922637.1 identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906 YP_003264530.1 Gfo/Idh/MocA family YP_001922638.1 identified by match to protein family HMM PF01734 YP_001922639.1 identified by match to protein family HMM PF03618 YP_001922641.1 identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231 YP_001922642.1 identified by match to protein family HMM PF00691 YP_001922643.1 identified by match to protein family HMM PF01618 YP_001922644.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771 YP_001922645.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001922646.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001922647.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001922648.1 identified by match to protein family HMM PF02687 YP_001922649.1 identified by match to protein family HMM PF00005 YP_001922650.1 identified by match to protein family HMM PF01047 YP_001922651.1 identified by match to protein family HMM PF00085 YP_001922652.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001922653.1 identified by glimmer; putative YP_001922655.1 identified by match to protein family HMM PF01047; match to protein family HMM PF01978 YP_001922657.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001922658.1 identified by match to protein family HMM PF00456 YP_001922659.1 identified by match to protein family HMM PF04215 YP_001922660.1 identified by match to protein family HMM PF02302 YP_001922661.1 identified by match to protein family HMM PF00359 YP_001922662.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF02302; match to protein family HMM PF08279 YP_001922663.1 identified by match to protein family HMM PF00255 YP_001922664.1 identified by match to protein family HMM PF00128 YP_001922665.1 identified by match to protein family HMM PF00165 YP_001922666.1 identified by match to protein family HMM PF01384 YP_001922667.1 identified by match to protein family HMM PF01865 YP_001922669.1 identified by match to protein family HMM PF03009 YP_001922671.1 identified by match to protein family HMM PF00724 YP_001922672.1 identified by match to protein family HMM PF01047 YP_001922673.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001922676.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_001922677.1 identified by match to protein family HMM PF06555 YP_001922678.1 identified by match to protein family HMM PF02810 YP_001922679.1 identified by match to protein family HMM PF00753 YP_001922680.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001922682.1 identified by match to protein family HMM PF08761 YP_001922683.1 identified by match to protein family HMM PF04657 YP_001922684.1 identified by match to protein family HMM PF00753 YP_001922685.1 identified by match to protein family HMM PF00082 YP_001922686.1 identified by match to protein family HMM PF01551; match to protein family HMM PF07501 YP_001922687.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_001922688.1 acts to load the DnaB helicase onto the initiation site during DNA replication YP_001922690.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_001922691.1 identified by match to protein family HMM PF01643 YP_001922693.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001922694.1 identified by match to protein family HMM PF00390; match to protein family HMM PF01262; match to protein family HMM PF03949 YP_001922695.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_001922697.1 unwinds double stranded DNA YP_001922698.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02903 YP_001922699.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001922700.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_001922702.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001922703.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_001922704.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001922705.1 identified by match to protein family HMM PF06107 YP_001922706.1 identified by match to protein family HMM PF00924 YP_001922708.1 identified by match to protein family HMM PF01810 YP_001922709.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01053; match to protein family HMM TIGR01977 YP_001922710.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_001922712.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_001922713.1 identified by match to protein family HMM PF01656 YP_001922714.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_001922715.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001922716.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001922717.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001922718.1 identified by match to protein family HMM PF01424 YP_001922719.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_001922720.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_001922721.1 in Escherichia coli transcription of this gene is enhanced by polyamines